locus-tag class description KU058_00005 PF00308 Bacterial dnaA protein KU058_00005 PF08299 Bacterial dnaA protein helix-turn-helix KU058_00005 PF11638 DnaA N-terminal domain KU058_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KU058_00010 PF02767 DNA polymerase III beta subunit, central domain KU058_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KU058_00015 PF02463 RecF/RecN/SMC N terminal domain KU058_00020 PF00204 DNA gyrase B KU058_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KU058_00020 PF18053 DNA gyrase B subunit insert domain KU058_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_00020 PF01751 Toprim domain KU058_00030 PF09335 SNARE associated Golgi protein KU058_00035 PF00005 ABC transporter KU058_00035 PF12848 ABC transporter KU058_00055 PF01521 Iron-sulphur cluster biosynthesis KU058_00060 PF00561 alpha/beta hydrolase fold KU058_00065 PF03702 Anhydro-N-acetylmuramic acid kinase KU058_00070 PF00579 tRNA synthetases class I (W and Y) KU058_00110 PF00209 Sodium:neurotransmitter symporter family KU058_00120 PF01189 16S rRNA methyltransferase RsmB/F KU058_00120 PF01029 NusB family KU058_00125 PF02911 Formyl transferase, C-terminal domain KU058_00125 PF00551 Formyl transferase KU058_00130 PF00920 Dehydratase family KU058_00145 PF03466 LysR substrate binding domain KU058_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_00150 PF00860 Permease family KU058_00155 PF00311 Phosphoenolpyruvate carboxylase KU058_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region KU058_00160 PF00440 Bacterial regulatory proteins, tetR family KU058_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU058_00170 PF00873 AcrB/AcrD/AcrF family KU058_00180 PF01556 DnaJ C terminal domain KU058_00180 PF00226 DnaJ domain KU058_00180 PF00684 DnaJ central domain KU058_00190 PF01113 Dihydrodipicolinate reductase, N-terminus KU058_00190 PF05173 Dihydrodipicolinate reductase, C-terminus KU058_00200 PF07690 Major Facilitator Superfamily KU058_00205 PF00248 Aldo/keto reductase family KU058_00210 PF03466 LysR substrate binding domain KU058_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_00225 PF00155 Aminotransferase class I and II KU058_00225 PF00392 Bacterial regulatory proteins, gntR family KU058_00230 PF00107 Zinc-binding dehydrogenase KU058_00230 PF08240 Alcohol dehydrogenase GroES-like domain KU058_00235 PF03352 Methyladenine glycosylase KU058_00250 PF00633 Helix-hairpin-helix motif KU058_00250 PF10576 Iron-sulfur binding domain of endonuclease III KU058_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein KU058_00250 PF14815 NUDIX domain KU058_00265 PF07043 Protein of unknown function (DUF1328) KU058_00270 PF03692 Putative zinc- or iron-chelating domain KU058_00275 PF07995 Glucose / Sorbosone dehydrogenase KU058_00280 PF16193 AAA C-terminal domain KU058_00280 PF00004 ATPase family associated with various cellular activities (AAA) KU058_00280 PF12002 MgsA AAA+ ATPase C terminal KU058_00285 PF01226 Formate/nitrite transporter KU058_00295 PF01259 SAICAR synthetase KU058_00305 PF00701 Dihydrodipicolinate synthetase family KU058_00310 PF00857 Isochorismatase family KU058_00315 PF01758 Sodium Bile acid symporter family KU058_00320 PF01554 MatE KU058_00325 PF04463 Protein of unknown function (DUF523) KU058_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU058_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU058_00345 PF02798 Glutathione S-transferase, N-terminal domain KU058_00345 PF14497 Glutathione S-transferase, C-terminal domain KU058_00355 PF00324 Amino acid permease KU058_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU058_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain KU058_00375 PF00392 Bacterial regulatory proteins, gntR family KU058_00375 PF07702 UTRA domain KU058_00380 PF05962 HutD KU058_00385 PF01175 Urocanase Rossmann-like domain KU058_00385 PF17392 Urocanase C-terminal domain KU058_00385 PF17391 Urocanase N-terminal domain KU058_00390 PF00221 Aromatic amino acid lyase KU058_00395 PF00324 Amino acid permease KU058_00400 PF01979 Amidohydrolase family KU058_00405 PF00491 Arginase family KU058_00420 PF01177 Asp/Glu/Hydantoin racemase KU058_00425 PF01380 SIS domain KU058_00430 PF14602 Hexapeptide repeat of succinyl-transferase KU058_00430 PF12804 MobA-like NTP transferase domain KU058_00430 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_00435 PF04608 Phosphatidylglycerophosphatase A KU058_00440 PF00586 AIR synthase related protein, N-terminal domain KU058_00440 PF02769 AIR synthase related protein, C-terminal domain KU058_00445 PF01029 NusB family KU058_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase KU058_00455 PF00925 GTP cyclohydrolase II KU058_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KU058_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase KU058_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KU058_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KU058_00490 PF00581 Rhodanese-like domain KU058_00495 PF02666 Phosphatidylserine decarboxylase KU058_00500 PF03069 Acetamidase/Formamidase family KU058_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_00520 PF00512 His Kinase A (phospho-acceptor) domain KU058_00520 PF11808 Phosphate regulon sensor protein PhoR KU058_00520 PF00989 PAS fold KU058_00525 PF00072 Response regulator receiver domain KU058_00525 PF00486 Transcriptional regulatory protein, C terminal KU058_00535 PF00106 short chain dehydrogenase KU058_00540 PF01554 MatE KU058_00545 PF00155 Aminotransferase class I and II KU058_00550 PF04286 Protein of unknown function (DUF445) KU058_00565 PF04262 Glutamate-cysteine ligase KU058_00570 PF02600 Disulfide bond formation protein DsbB KU058_00575 PF04717 Type VI secretion system, phage-baseplate injector KU058_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU058_00575 PF13296 Putative type VI secretion system Rhs element Vgr KU058_00580 PF00877 NlpC/P60 family KU058_00580 PF01476 LysM domain KU058_00595 PF05728 Uncharacterised protein family (UPF0227) KU058_00600 PF00204 DNA gyrase B KU058_00600 PF01751 Toprim domain KU058_00600 PF00986 DNA gyrase B subunit, carboxyl terminus KU058_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_00605 PF00106 short chain dehydrogenase KU058_00610 PF04115 Ureidoglycolate lyase KU058_00615 PF03561 Allantoicase repeat KU058_00620 PF01494 FAD binding domain KU058_00630 PF00860 Permease family KU058_00635 PF00576 HIUase/Transthyretin family KU058_00665 PF02683 Cytochrome C biogenesis protein transmembrane region KU058_00665 PF11412 Disulphide bond corrector protein DsbC KU058_00670 PF00990 Diguanylate cyclase, GGDEF domain KU058_00670 PF07694 5TMR of 5TMR-LYT KU058_00675 PF07859 alpha/beta hydrolase fold KU058_00685 PF03960 ArsC family KU058_00690 PF03372 Endonuclease/Exonuclease/phosphatase family KU058_00695 PF00156 Phosphoribosyl transferase domain KU058_00700 PF00593 TonB dependent receptor KU058_00700 PF07715 TonB-dependent Receptor Plug Domain KU058_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KU058_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KU058_00715 PF04101 Glycosyltransferase family 28 C-terminal domain KU058_00715 PF03033 Glycosyltransferase family 28 N-terminal domain KU058_00720 PF08245 Mur ligase middle domain KU058_00720 PF02875 Mur ligase family, glutamate ligase domain KU058_00720 PF01225 Mur ligase family, catalytic domain KU058_00725 PF01820 D-ala D-ala ligase N-terminus KU058_00725 PF07478 D-ala D-ala ligase C-terminus KU058_00730 PF08478 POTRA domain, FtsQ-type KU058_00730 PF03799 Cell division protein FtsQ KU058_00735 PF02491 SHS2 domain inserted in FTSA KU058_00740 PF12327 FtsZ family, C-terminal domain KU058_00740 PF00091 Tubulin/FtsZ family, GTPase domain KU058_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KU058_00755 PF01551 Peptidase family M23 KU058_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain KU058_00760 PF00456 Transketolase, thiamine diphosphate binding domain KU058_00765 PF02817 e3 binding domain KU058_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU058_00765 PF00364 Biotin-requiring enzyme KU058_00775 PF01169 Uncharacterized protein family UPF0016 KU058_00780 PF00593 TonB dependent receptor KU058_00780 PF07715 TonB-dependent Receptor Plug Domain KU058_00785 PF00258 Flavodoxin KU058_00785 PF01613 Flavin reductase like domain KU058_00790 PF03692 Putative zinc- or iron-chelating domain KU058_00795 PF00478 IMP dehydrogenase / GMP reductase domain KU058_00795 PF00571 CBS domain KU058_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU058_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU058_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU058_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU058_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KU058_00805 PF01243 Pyridoxamine 5'-phosphate oxidase KU058_00810 PF02272 DHHA1 domain KU058_00810 PF01368 DHH family KU058_00810 PF17768 RecJ OB domain KU058_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU058_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KU058_00840 PF04452 RNA methyltransferase KU058_00845 PF00924 Mechanosensitive ion channel KU058_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus KU058_00855 PF13193 AMP-binding enzyme C-terminal domain KU058_00855 PF00501 AMP-binding enzyme KU058_00860 PF00857 Isochorismatase family KU058_00865 PF01037 Lrp/AsnC ligand binding domain KU058_00870 PF00872 Transposase, Mutator family KU058_00875 PF00296 Luciferase-like monooxygenase KU058_00880 PF03358 NADPH-dependent FMN reductase KU058_00885 PF00072 Response regulator receiver domain KU058_00885 PF00196 Bacterial regulatory proteins, luxR family KU058_00895 PF00072 Response regulator receiver domain KU058_00895 PF01627 Hpt domain KU058_00895 PF00512 His Kinase A (phospho-acceptor) domain KU058_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_00895 PF00672 HAMP domain KU058_00900 PF04341 Protein of unknown function, DUF485 KU058_00905 PF00474 Sodium:solute symporter family KU058_00915 PF02028 BCCT, betaine/carnitine/choline family transporter KU058_00925 PF00990 Diguanylate cyclase, GGDEF domain KU058_00935 PF17760 UvrA interaction domain KU058_00935 PF17755 UvrA DNA-binding domain KU058_00935 PF00005 ABC transporter KU058_00940 PF00440 Bacterial regulatory proteins, tetR family KU058_00940 PF16925 Tetracyclin repressor-like, C-terminal domain KU058_00945 PF08240 Alcohol dehydrogenase GroES-like domain KU058_00945 PF00107 Zinc-binding dehydrogenase KU058_00955 PF06942 GlpM protein KU058_00960 PF02581 Thiamine monophosphate synthase KU058_00960 PF08543 Phosphomethylpyrimidine kinase KU058_00960 PF03070 TENA/THI-4/PQQC family KU058_00970 PF07690 Major Facilitator Superfamily KU058_00975 PF00436 Single-strand binding protein family KU058_00985 PF03591 AzlC protein KU058_00995 PF00324 Amino acid permease KU058_01000 PF00155 Aminotransferase class I and II KU058_01000 PF00392 Bacterial regulatory proteins, gntR family KU058_01005 PF00202 Aminotransferase class-III KU058_01010 PF00171 Aldehyde dehydrogenase family KU058_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_01020 PF00857 Isochorismatase family KU058_01025 PF02678 Pirin KU058_01025 PF05726 Pirin C-terminal cupin domain KU058_01030 PF01593 Flavin containing amine oxidoreductase KU058_01050 PF07690 Major Facilitator Superfamily KU058_01055 PF03466 LysR substrate binding domain KU058_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_01075 PF00248 Aldo/keto reductase family KU058_01080 PF02311 AraC-like ligand binding domain KU058_01080 PF12833 Helix-turn-helix domain KU058_01110 PF01638 HxlR-like helix-turn-helix KU058_01115 PF02525 Flavodoxin-like fold KU058_01135 PF02705 K+ potassium transporter KU058_01160 PF00230 Major intrinsic protein KU058_01175 PF00977 Histidine biosynthesis protein KU058_01180 PF01636 Phosphotransferase enzyme family KU058_01195 PF03992 Antibiotic biosynthesis monooxygenase KU058_01210 PF00977 Histidine biosynthesis protein KU058_01225 PF00117 Glutamine amidotransferase class-I KU058_01230 PF00475 Imidazoleglycerol-phosphate dehydratase KU058_01250 PF00583 Acetyltransferase (GNAT) family KU058_01255 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KU058_01255 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KU058_01265 PF00512 His Kinase A (phospho-acceptor) domain KU058_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_01265 PF00672 HAMP domain KU058_01270 PF00486 Transcriptional regulatory protein, C terminal KU058_01270 PF00072 Response regulator receiver domain KU058_01275 PF09371 Tex-like protein N-terminal domain KU058_01275 PF16921 Tex protein YqgF-like domain KU058_01275 PF00575 S1 RNA binding domain KU058_01275 PF17674 HHH domain KU058_01280 PF01740 STAS domain KU058_01280 PF00916 Sulfate permease family KU058_01285 PF00106 short chain dehydrogenase KU058_01290 PF01053 Cys/Met metabolism PLP-dependent enzyme KU058_01295 PF00005 ABC transporter KU058_01295 PF12848 ABC transporter KU058_01320 PF04191 Phospholipid methyltransferase KU058_01340 PF00529 HlyD membrane-fusion protein of T1SS KU058_01340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU058_01345 PF00873 AcrB/AcrD/AcrF family KU058_01350 PF01545 Cation efflux family KU058_01380 PF00324 Amino acid permease KU058_01395 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU058_01410 PF01795 MraW methylase family KU058_01420 PF03717 Penicillin-binding Protein dimerisation domain KU058_01420 PF00905 Penicillin binding protein transpeptidase domain KU058_01425 PF02875 Mur ligase family, glutamate ligase domain KU058_01425 PF08245 Mur ligase middle domain KU058_01425 PF01225 Mur ligase family, catalytic domain KU058_01430 PF02875 Mur ligase family, glutamate ligase domain KU058_01430 PF01225 Mur ligase family, catalytic domain KU058_01430 PF08245 Mur ligase middle domain KU058_01435 PF00953 Glycosyl transferase family 4 KU058_01445 PF13847 Methyltransferase domain KU058_01450 PF00905 Penicillin binding protein transpeptidase domain KU058_01450 PF00912 Transglycosylase KU058_01450 PF17092 Penicillin-binding protein OB-like domain KU058_01455 PF11104 Type IV pilus assembly protein PilM; KU058_01460 PF05137 Fimbrial assembly protein (PilN) KU058_01465 PF04350 Pilus assembly protein, PilO KU058_01475 PF03958 Bacterial type II/III secretion system short domain KU058_01475 PF00263 Bacterial type II and III secretion system protein KU058_01475 PF11741 AMIN domain KU058_01475 PF07660 Secretin and TonB N terminus short domain KU058_01480 PF01202 Shikimate kinase KU058_01485 PF01761 3-dehydroquinate synthase KU058_01495 PF01645 Conserved region in glutamate synthase KU058_01495 PF00310 Glutamine amidotransferases class-II KU058_01495 PF01493 GXGXG motif KU058_01495 PF04898 Glutamate synthase central domain KU058_01500 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KU058_01500 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_01510 PF04011 LemA family KU058_01515 PF04536 TPM domain KU058_01525 PF07963 Prokaryotic N-terminal methylation motif KU058_01525 PF00114 Pilin (bacterial filament) KU058_01535 PF15864 Protein glycosylation ligase KU058_01535 PF11846 Virulence factor membrane-bound polymerase, C-terminal KU058_01535 PF04932 O-Antigen ligase KU058_01545 PF00210 Ferritin-like domain KU058_01550 PF04324 BFD-like [2Fe-2S] binding domain KU058_01555 PF01042 Endoribonuclease L-PSP KU058_01560 PF04607 Region found in RelA / SpoT proteins KU058_01560 PF02824 TGS domain KU058_01560 PF13291 ACT domain KU058_01570 PF01192 RNA polymerase Rpb6 KU058_01575 PF00625 Guanylate kinase KU058_01580 PF02401 LytB protein KU058_01620 PF00886 Ribosomal protein S16 KU058_01625 PF05239 PRC-barrel domain KU058_01625 PF01782 RimM N-terminal domain KU058_01630 PF01746 tRNA (Guanine-1)-methyltransferase KU058_01635 PF01245 Ribosomal protein L19 KU058_01640 PF00561 alpha/beta hydrolase fold KU058_01645 PF03280 Proteobacterial lipase chaperone protein KU058_01650 PF09157 Pseudouridine synthase II TruB, C-terminal KU058_01650 PF16198 tRNA pseudouridylate synthase B C-terminal domain KU058_01650 PF01509 TruB family pseudouridylate synthase (N terminal domain) KU058_01655 PF01925 Sulfite exporter TauE/SafE KU058_01665 PF00892 EamA-like transporter family KU058_01670 PF00892 EamA-like transporter family KU058_01675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU058_01675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU058_01680 PF02913 FAD linked oxidases, C-terminal domain KU058_01680 PF01565 FAD binding domain KU058_01690 PF03992 Antibiotic biosynthesis monooxygenase KU058_01695 PF02525 Flavodoxin-like fold KU058_01705 PF07690 Major Facilitator Superfamily KU058_01710 PF12805 FUSC-like inner membrane protein yccS KU058_01715 PF00080 Copper/zinc superoxide dismutase (SODC) KU058_01720 PF01594 AI-2E family transporter KU058_01725 PF13614 AAA domain KU058_01755 PF00324 Amino acid permease KU058_01760 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KU058_01760 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KU058_01765 PF00202 Aminotransferase class-III KU058_01770 PF04958 Arginine N-succinyltransferase beta subunit KU058_01775 PF00171 Aldehyde dehydrogenase family KU058_01780 PF04996 Succinylarginine dihydrolase KU058_01785 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KU058_01800 PF05922 Peptidase inhibitor I9 KU058_01800 PF00082 Subtilase family KU058_01815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_01815 PF03466 LysR substrate binding domain KU058_01820 PF00892 EamA-like transporter family KU058_01830 PF05746 DALR anticodon binding domain KU058_01830 PF02092 Glycyl-tRNA synthetase beta subunit KU058_01835 PF02091 Glycyl-tRNA synthetase alpha subunit KU058_01860 PF00571 CBS domain KU058_01865 PF04024 PspC domain KU058_01875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_01875 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU058_01875 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_01875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_01885 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KU058_01885 PF08501 Shikimate dehydrogenase substrate binding domain KU058_01885 PF01488 Shikimate / quinate 5-dehydrogenase KU058_01890 PF01218 Coproporphyrinogen III oxidase KU058_01895 PF00925 GTP cyclohydrolase II KU058_01900 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KU058_01900 PF02779 Transketolase, pyrimidine binding domain KU058_01900 PF02780 Transketolase, C-terminal domain KU058_01905 PF00459 Inositol monophosphatase family KU058_01910 PF00271 Helicase conserved C-terminal domain KU058_01910 PF12343 Cold shock protein DEAD box A KU058_01910 PF03880 DbpA RNA binding domain KU058_01910 PF00270 DEAD/DEAH box helicase KU058_01920 PF00005 ABC transporter KU058_01925 PF02405 Permease MlaE KU058_01935 PF05494 MlaC protein KU058_01945 PF01544 CorA-like Mg2+ transporter protein KU058_01950 PF03641 Possible lysine decarboxylase KU058_01955 PF00293 NUDIX domain KU058_01960 PF00156 Phosphoribosyl transferase domain KU058_01965 PF00270 DEAD/DEAH box helicase KU058_01965 PF00271 Helicase conserved C-terminal domain KU058_01965 PF17191 RecG wedge domain KU058_01980 PF01553 Acyltransferase KU058_01990 PF00375 Sodium:dicarboxylate symporter family KU058_02000 PF01926 50S ribosome-binding GTPase KU058_02005 PF02082 Transcriptional regulator KU058_02010 PF00042 Globin KU058_02010 PF00970 Oxidoreductase FAD-binding domain KU058_02010 PF00175 Oxidoreductase NAD-binding domain KU058_02015 PF05872 Bacterial protein of unknown function (DUF853) KU058_02020 PF01053 Cys/Met metabolism PLP-dependent enzyme KU058_02025 PF00117 Glutamine amidotransferase class-I KU058_02030 PF00338 Ribosomal protein S10p/S20e KU058_02035 PF00297 Ribosomal protein L3 KU058_02040 PF00573 Ribosomal protein L4/L1 family KU058_02045 PF00276 Ribosomal protein L23 KU058_02050 PF03947 Ribosomal Proteins L2, C-terminal domain KU058_02050 PF00181 Ribosomal Proteins L2, RNA binding domain KU058_02055 PF00203 Ribosomal protein S19 KU058_02060 PF00237 Ribosomal protein L22p/L17e KU058_02065 PF00189 Ribosomal protein S3, C-terminal domain KU058_02065 PF07650 KH domain KU058_02070 PF00252 Ribosomal protein L16p/L10e KU058_02075 PF00831 Ribosomal L29 protein KU058_02080 PF00366 Ribosomal protein S17 KU058_02085 PF00238 Ribosomal protein L14p/L23e KU058_02090 PF00467 KOW motif KU058_02090 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KU058_02095 PF00281 Ribosomal protein L5 KU058_02095 PF00673 ribosomal L5P family C-terminus KU058_02100 PF00253 Ribosomal protein S14p/S29e KU058_02105 PF00410 Ribosomal protein S8 KU058_02110 PF00347 Ribosomal protein L6 KU058_02115 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KU058_02120 PF00333 Ribosomal protein S5, N-terminal domain KU058_02120 PF03719 Ribosomal protein S5, C-terminal domain KU058_02125 PF00327 Ribosomal protein L30p/L7e KU058_02130 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KU058_02135 PF00344 SecY translocase KU058_02140 PF00444 Ribosomal protein L36 KU058_02145 PF00416 Ribosomal protein S13/S18 KU058_02150 PF00411 Ribosomal protein S11 KU058_02155 PF00163 Ribosomal protein S4/S9 N-terminal domain KU058_02155 PF01479 S4 domain KU058_02160 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KU058_02160 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KU058_02160 PF01000 RNA polymerase Rpb3/RpoA insert domain KU058_02165 PF01196 Ribosomal protein L17 KU058_02170 PF00743 Flavin-binding monooxygenase-like KU058_02175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_02175 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_02175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_02180 PF03937 Flavinator of succinate dehydrogenase KU058_02210 PF09526 Probable metal-binding protein (DUF2387) KU058_02215 PF01432 Peptidase family M3 KU058_02220 PF17876 Cold shock domain KU058_02220 PF08461 Ribonuclease R winged-helix domain KU058_02220 PF08206 Ribonuclease B OB domain KU058_02220 PF00773 RNB domain KU058_02220 PF00575 S1 RNA binding domain KU058_02265 PF01557 Fumarylacetoacetate (FAA) hydrolase family KU058_02270 PF12833 Helix-turn-helix domain KU058_02275 PF00892 EamA-like transporter family KU058_02280 PF03631 Virulence factor BrkB KU058_02285 PF03358 NADPH-dependent FMN reductase KU058_02310 PF02130 Uncharacterized protein family UPF0054 KU058_02315 PF02562 PhoH-like protein KU058_02320 PF01938 TRAM domain KU058_02320 PF00919 Uncharacterized protein family UPF0004 KU058_02320 PF04055 Radical SAM superfamily KU058_02325 PF10145 Phage-related minor tail protein KU058_02325 PF01464 Transglycosylase SLT domain KU058_02325 PF01551 Peptidase family M23 KU058_02335 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KU058_02335 PF00056 lactate/malate dehydrogenase, NAD binding domain KU058_02355 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KU058_02360 PF01066 CDP-alcohol phosphatidyltransferase KU058_02405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_02405 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_02405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_02410 PF00440 Bacterial regulatory proteins, tetR family KU058_02410 PF17932 Tetracyclin repressor-like, C-terminal domain KU058_02425 PF01039 Carboxyl transferase domain KU058_02430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_02430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_02430 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_02440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU058_02440 PF00364 Biotin-requiring enzyme KU058_02440 PF00289 Biotin carboxylase, N-terminal domain KU058_02440 PF02785 Biotin carboxylase C-terminal domain KU058_02450 PF04386 Stringent starvation protein B KU058_02455 PF00043 Glutathione S-transferase, C-terminal domain KU058_02455 PF13417 Glutathione S-transferase, N-terminal domain KU058_02460 PF00380 Ribosomal protein S9/S16 KU058_02465 PF00572 Ribosomal protein L13 KU058_02470 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KU058_02475 PF00398 Ribosomal RNA adenine dimethylase KU058_02480 PF00149 Calcineurin-like phosphoesterase KU058_02500 PF16360 GTP-binding GTPase Middle Region KU058_02500 PF13167 GTP-binding GTPase N-terminal KU058_02500 PF01926 50S ribosome-binding GTPase KU058_02510 PF13091 PLD-like domain KU058_02515 PF00149 Calcineurin-like phosphoesterase KU058_02515 PF10518 TAT (twin-arginine translocation) pathway signal sequence KU058_02520 PF00691 OmpA family KU058_02520 PF01389 OmpA-like transmembrane domain KU058_02525 PF17152 Periplasmic sensor domain KU058_02525 PF00990 Diguanylate cyclase, GGDEF domain KU058_02560 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_02560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU058_02570 PF04273 Putative phosphatase (DUF442) KU058_02570 PF00753 Metallo-beta-lactamase superfamily KU058_02575 PF00561 alpha/beta hydrolase fold KU058_02580 PF00085 Thioredoxin KU058_02585 PF03061 Thioesterase superfamily KU058_02595 PF04461 Protein of unknown function (DUF520) KU058_02605 PF01266 FAD dependent oxidoreductase KU058_02605 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KU058_02615 PF03795 YCII-related domain KU058_02620 PF04279 Intracellular septation protein A KU058_02625 PF02811 PHP domain KU058_02630 PF01062 Bestrophin, RFP-TM, chloride channel KU058_02635 PF04002 RadC-like JAB domain KU058_02640 PF02441 Flavoprotein KU058_02640 PF04127 DNA / pantothenate metabolism flavoprotein KU058_02645 PF07549 SecD/SecF GG Motif KU058_02645 PF02355 Protein export membrane protein KU058_02650 PF02355 Protein export membrane protein KU058_02650 PF13721 SecD export protein N-terminal TM region KU058_02650 PF07549 SecD/SecF GG Motif KU058_02655 PF02699 Preprotein translocase subunit KU058_02660 PF01702 Queuine tRNA-ribosyltransferase KU058_02675 PF02547 Queuosine biosynthesis protein KU058_02685 PF07689 KaiB domain KU058_02685 PF00512 His Kinase A (phospho-acceptor) domain KU058_02685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_02690 PF03710 Glutamate-ammonia ligase adenylyltransferase KU058_02690 PF08335 GlnD PII-uridylyltransferase KU058_02695 PF01063 Amino-transferase class IV KU058_02710 PF01522 Polysaccharide deacetylase KU058_02715 PF00535 Glycosyl transferase family 2 KU058_02720 PF13439 Glycosyltransferase Family 4 KU058_02720 PF00534 Glycosyl transferases group 1 KU058_02745 PF17101 Stealth protein CR1, conserved region 1 KU058_02745 PF11380 Stealth protein CR2, conserved region 2 KU058_02745 PF17102 Stealth protein CR3, conserved region 3 KU058_02750 PF02938 GAD domain KU058_02750 PF01336 OB-fold nucleic acid binding domain KU058_02750 PF00152 tRNA synthetases class II (D, K and N) KU058_02760 PF07715 TonB-dependent Receptor Plug Domain KU058_02760 PF00593 TonB dependent receptor KU058_02780 PF06146 Phosphate-starvation-inducible E KU058_02785 PF02798 Glutathione S-transferase, N-terminal domain KU058_02785 PF00043 Glutathione S-transferase, C-terminal domain KU058_02790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_02790 PF03466 LysR substrate binding domain KU058_02795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_02795 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_02795 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU058_02795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_02800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_02800 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_02800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_02800 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU058_02810 PF00512 His Kinase A (phospho-acceptor) domain KU058_02810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_02810 PF00672 HAMP domain KU058_02815 PF00072 Response regulator receiver domain KU058_02815 PF00486 Transcriptional regulatory protein, C terminal KU058_02820 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KU058_02840 PF01923 Cobalamin adenosyltransferase KU058_02845 PF00593 TonB dependent receptor KU058_02845 PF07715 TonB-dependent Receptor Plug Domain KU058_02850 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KU058_02855 PF00291 Pyridoxal-phosphate dependent enzyme KU058_02880 PF00290 Tryptophan synthase alpha chain KU058_02885 PF01039 Carboxyl transferase domain KU058_02890 PF08245 Mur ligase middle domain KU058_02890 PF02875 Mur ligase family, glutamate ligase domain KU058_02905 PF00753 Metallo-beta-lactamase superfamily KU058_02910 PF10417 C-terminal domain of 1-Cys peroxiredoxin KU058_02910 PF00578 AhpC/TSA family KU058_02915 PF02810 SEC-C motif KU058_02915 PF01043 SecA preprotein cross-linking domain KU058_02915 PF07516 SecA Wing and Scaffold domain KU058_02915 PF07517 SecA DEAD-like domain KU058_02925 PF07690 Major Facilitator Superfamily KU058_02925 PF00083 Sugar (and other) transporter KU058_02930 PF03006 Haemolysin-III related KU058_02955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU058_02955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU058_02955 PF00378 Enoyl-CoA hydratase/isomerase KU058_02960 PF02803 Thiolase, C-terminal domain KU058_02960 PF00108 Thiolase, N-terminal domain KU058_02965 PF02311 AraC-like ligand binding domain KU058_02965 PF12833 Helix-turn-helix domain KU058_02970 PF02515 CoA-transferase family III KU058_02975 PF04966 Carbohydrate-selective porin, OprB family KU058_02980 PF01011 PQQ enzyme repeat KU058_02985 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU058_02985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU058_02995 PF00893 Small Multidrug Resistance protein KU058_03005 PF00108 Thiolase, N-terminal domain KU058_03005 PF02803 Thiolase, C-terminal domain KU058_03015 PF13505 Outer membrane protein beta-barrel domain KU058_03015 PF00691 OmpA family KU058_03025 PF01139 tRNA-splicing ligase RtcB KU058_03030 PF00324 Amino acid permease KU058_03035 PF08468 Methyltransferase small domain N-terminal KU058_03035 PF05175 Methyltransferase small domain KU058_03040 PF00860 Permease family KU058_03045 PF03144 Elongation factor Tu domain 2 KU058_03045 PF00009 Elongation factor Tu GTP binding domain KU058_03045 PF00679 Elongation factor G C-terminus KU058_03050 PF01741 Large-conductance mechanosensitive channel, MscL KU058_03065 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KU058_03065 PF06827 Zinc finger found in FPG and IleRS KU058_03065 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KU058_03070 PF02245 Methylpurine-DNA glycosylase (MPG) KU058_03075 PF07715 TonB-dependent Receptor Plug Domain KU058_03075 PF00593 TonB dependent receptor KU058_03090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU058_03105 PF13098 Thioredoxin-like domain KU058_03105 PF10411 Disulfide bond isomerase protein N-terminus KU058_03110 PF01571 Aminomethyltransferase folate-binding domain KU058_03120 PF04343 Protein of unknown function, DUF488 KU058_03125 PF03831 PhnA domain KU058_03125 PF08274 PhnA Zinc-Ribbon KU058_03130 PF07411 Domain of unknown function (DUF1508) KU058_03135 PF03129 Anticodon binding domain KU058_03135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU058_03135 PF04073 Aminoacyl-tRNA editing domain KU058_03140 PF00873 AcrB/AcrD/AcrF family KU058_03155 PF00072 Response regulator receiver domain KU058_03160 PF00072 Response regulator receiver domain KU058_03165 PF01584 CheW-like domain KU058_03170 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KU058_03170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KU058_03175 PF01584 CheW-like domain KU058_03175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_03175 PF01627 Hpt domain KU058_03175 PF00072 Response regulator receiver domain KU058_03185 PF07687 Peptidase dimerisation domain KU058_03185 PF01546 Peptidase family M20/M25/M40 KU058_03190 PF08085 Entericidin EcnA/B family KU058_03200 PF04304 Protein of unknown function (DUF454) KU058_03205 PF17969 L,D-transpeptidase C-terminal domain KU058_03205 PF03734 L,D-transpeptidase catalytic domain KU058_03245 PF00175 Oxidoreductase NAD-binding domain KU058_03245 PF00667 FAD binding domain KU058_03245 PF00258 Flavodoxin KU058_03255 PF12805 FUSC-like inner membrane protein yccS KU058_03260 PF07690 Major Facilitator Superfamily KU058_03265 PF00881 Nitroreductase family KU058_03280 PF01235 Sodium:alanine symporter family KU058_03285 PF01734 Patatin-like phospholipase KU058_03290 PF13291 ACT domain KU058_03290 PF00291 Pyridoxal-phosphate dependent enzyme KU058_03295 PF05992 SbmA/BacA-like family KU058_03325 PF02934 GatB/GatE catalytic domain KU058_03325 PF02637 GatB domain KU058_03330 PF01425 Amidase KU058_03335 PF02686 Glu-tRNAGln amidotransferase C subunit KU058_03345 PF04085 rod shape-determining protein MreC KU058_03350 PF04093 rod shape-determining protein MreD KU058_03355 PF02545 Maf-like protein KU058_03360 PF00575 S1 RNA binding domain KU058_03360 PF10150 Ribonuclease E/G family KU058_03370 PF06974 Protein of unknown function (DUF1298) KU058_03370 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KU058_03375 PF01507 Phosphoadenosine phosphosulfate reductase family KU058_03390 PF02525 Flavodoxin-like fold KU058_03410 PF02673 Bacitracin resistance protein BacA KU058_03415 PF06719 AraC-type transcriptional regulator N-terminus KU058_03415 PF12833 Helix-turn-helix domain KU058_03420 PF00698 Acyl transferase domain KU058_03420 PF08240 Alcohol dehydrogenase GroES-like domain KU058_03420 PF08990 Erythronolide synthase docking KU058_03420 PF09277 Erythronolide synthase, docking KU058_03420 PF16197 Ketoacyl-synthetase C-terminal extension KU058_03420 PF02801 Beta-ketoacyl synthase, C-terminal domain KU058_03420 PF00550 Phosphopantetheine attachment site KU058_03420 PF08659 KR domain KU058_03420 PF00109 Beta-ketoacyl synthase, N-terminal domain KU058_03420 PF14765 Polyketide synthase dehydratase KU058_03425 PF01965 DJ-1/PfpI family KU058_03435 PF00324 Amino acid permease KU058_03440 PF04303 PrpF protein KU058_03445 PF00348 Polyprenyl synthetase KU058_03450 PF04237 YjbR KU058_03455 PF01145 SPFH domain / Band 7 family KU058_03465 PF01734 Patatin-like phospholipase KU058_03485 PF08019 Phosphoethanolamine transferase EptA/EptB KU058_03485 PF00884 Sulfatase KU058_03490 PF00072 Response regulator receiver domain KU058_03490 PF00486 Transcriptional regulatory protein, C terminal KU058_03495 PF08521 Two-component sensor kinase N-terminal KU058_03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_03495 PF00512 His Kinase A (phospho-acceptor) domain KU058_03505 PF00909 Ammonium Transporter Family KU058_03510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_03510 PF03466 LysR substrate binding domain KU058_03530 PF00133 tRNA synthetases class I (I, L, M and V) KU058_03530 PF10458 Valyl tRNA synthetase tRNA binding arm KU058_03530 PF08264 Anticodon-binding domain of tRNA KU058_03550 PF01906 Putative heavy-metal-binding KU058_03555 PF01906 Putative heavy-metal-binding KU058_03560 PF02321 Outer membrane efflux protein KU058_03565 PF00873 AcrB/AcrD/AcrF family KU058_03570 PF00529 HlyD membrane-fusion protein of T1SS KU058_03570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU058_03575 PF01569 PAP2 superfamily KU058_03585 PF00348 Polyprenyl synthetase KU058_03595 PF00829 Ribosomal prokaryotic L21 protein KU058_03600 PF01016 Ribosomal L27 protein KU058_03605 PF03548 Outer membrane lipoprotein carrier protein LolA KU058_03615 PF02403 Seryl-tRNA synthetase N-terminal domain KU058_03615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU058_03620 PF14824 Sirohaem biosynthesis protein central KU058_03620 PF10414 Sirohaem synthase dimerisation region KU058_03620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KU058_03625 PF00588 SpoU rRNA Methylase family KU058_03630 PF01638 HxlR-like helix-turn-helix KU058_03635 PF03358 NADPH-dependent FMN reductase KU058_03640 PF13520 Amino acid permease KU058_03645 PF00465 Iron-containing alcohol dehydrogenase KU058_03655 PF03099 Biotin/lipoate A/B protein ligase family KU058_03660 PF04359 Protein of unknown function (DUF493) KU058_03665 PF04545 Sigma-70, region 4 KU058_03665 PF04546 Sigma-70, non-essential region KU058_03665 PF03979 Sigma-70 factor, region 1.1 KU058_03665 PF00140 Sigma-70 factor, region 1.2 KU058_03665 PF04539 Sigma-70 region 3 KU058_03665 PF04542 Sigma-70 region 2 KU058_03685 PF00581 Rhodanese-like domain KU058_03685 PF17773 UPF0176 acylphosphatase like domain KU058_03695 PF00285 Citrate synthase, C-terminal domain KU058_03700 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KU058_03705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KU058_03710 PF00890 FAD binding domain KU058_03710 PF02910 Fumarate reductase flavoprotein C-term KU058_03715 PF13085 2Fe-2S iron-sulfur cluster binding domain KU058_03730 PF16078 2-oxoglutarate dehydrogenase N-terminus KU058_03730 PF00676 Dehydrogenase E1 component KU058_03730 PF16870 2-oxoglutarate dehydrogenase C-terminal KU058_03730 PF02779 Transketolase, pyrimidine binding domain KU058_03735 PF02817 e3 binding domain KU058_03735 PF00364 Biotin-requiring enzyme KU058_03735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU058_03740 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_03740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU058_03745 PF08442 ATP-grasp domain KU058_03745 PF00549 CoA-ligase KU058_03750 PF02629 CoA binding domain KU058_03750 PF00549 CoA-ligase KU058_03755 PF00579 tRNA synthetases class I (W and Y) KU058_03760 PF05661 Protein of unknown function (DUF808) KU058_03765 PF04228 Putative neutral zinc metallopeptidase KU058_03770 PF00999 Sodium/hydrogen exchanger family KU058_03800 PF09587 Bacterial capsule synthesis protein PGA_cap KU058_03810 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU058_03815 PF00582 Universal stress protein family KU058_03820 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_03825 PF01272 Transcription elongation factor, GreA/GreB, C-term KU058_03825 PF03449 Transcription elongation factor, N-terminal KU058_03830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU058_03830 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KU058_03830 PF02142 MGS-like domain KU058_03835 PF00117 Glutamine amidotransferase class-I KU058_03835 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KU058_03850 PF01985 CRS1 / YhbY (CRM) domain KU058_03855 PF01728 FtsJ-like methyltransferase KU058_03860 PF06480 FtsH Extracellular KU058_03860 PF17862 AAA+ lid domain KU058_03860 PF00004 ATPase family associated with various cellular activities (AAA) KU058_03860 PF01434 Peptidase family M41 KU058_03865 PF00809 Pterin binding enzyme KU058_03885 PF16655 PhoD-like phosphatase, N-terminal domain KU058_03885 PF09423 PhoD-like phosphatase KU058_03900 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KU058_03900 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KU058_03915 PF00083 Sugar (and other) transporter KU058_03920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KU058_03920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KU058_03925 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KU058_03925 PF01266 FAD dependent oxidoreductase KU058_03930 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KU058_03930 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KU058_03935 PF00781 Diacylglycerol kinase catalytic domain KU058_03940 PF00149 Calcineurin-like phosphoesterase KU058_03950 PF00166 Chaperonin 10 Kd subunit KU058_03955 PF00118 TCP-1/cpn60 chaperonin family KU058_03960 PF01219 Prokaryotic diacylglycerol kinase KU058_03970 PF03009 Glycerophosphoryl diester phosphodiesterase family KU058_03975 PF00873 AcrB/AcrD/AcrF family KU058_03985 PF01435 Peptidase family M48 KU058_03990 PF01464 Transglycosylase SLT domain KU058_03995 PF01171 PP-loop family KU058_04005 PF01464 Transglycosylase SLT domain KU058_04005 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU058_04010 PF03449 Transcription elongation factor, N-terminal KU058_04010 PF01272 Transcription elongation factor, GreA/GreB, C-term KU058_04025 PF13193 AMP-binding enzyme C-terminal domain KU058_04025 PF00975 Thioesterase domain KU058_04025 PF00668 Condensation domain KU058_04025 PF00550 Phosphopantetheine attachment site KU058_04025 PF00501 AMP-binding enzyme KU058_04050 PF00881 Nitroreductase family KU058_04065 PF02595 Glycerate kinase family KU058_04070 PF00384 Molybdopterin oxidoreductase KU058_04075 PF02634 FdhD/NarQ family KU058_04080 PF06803 Protein of unknown function (DUF1232) KU058_04085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU058_04085 PF11890 Domain of unknown function (DUF3410) KU058_04085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU058_04090 PF00152 tRNA synthetases class II (D, K and N) KU058_04100 PF18073 Rubredoxin metal binding domain KU058_04105 PF00324 Amino acid permease KU058_04115 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KU058_04115 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KU058_04120 PF01678 Diaminopimelate epimerase KU058_04125 PF01810 LysE type translocator KU058_04130 PF02899 Phage integrase, N-terminal SAM-like domain KU058_04130 PF00589 Phage integrase family KU058_04135 PF01012 Electron transfer flavoprotein domain KU058_04140 PF01012 Electron transfer flavoprotein domain KU058_04140 PF00766 Electron transfer flavoprotein FAD-binding domain KU058_04145 PF00521 DNA gyrase/topoisomerase IV, subunit A KU058_04145 PF03989 DNA gyrase C-terminal domain, beta-propeller KU058_04160 PF00535 Glycosyl transferase family 2 KU058_04180 PF13533 Biotin-lipoyl like KU058_04190 PF00266 Aminotransferase class-V KU058_04205 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KU058_04215 PF12704 MacB-like periplasmic core domain KU058_04215 PF02687 FtsX-like permease family KU058_04220 PF00005 ABC transporter KU058_04225 PF00753 Metallo-beta-lactamase superfamily KU058_04225 PF13567 Domain of unknown function (DUF4131) KU058_04225 PF03772 Competence protein KU058_04235 PF01343 Peptidase family S49 KU058_04235 PF06965 Na+/H+ antiporter 1 KU058_04240 PF12697 Alpha/beta hydrolase family KU058_04245 PF00551 Formyl transferase KU058_04250 PF02769 AIR synthase related protein, C-terminal domain KU058_04250 PF00586 AIR synthase related protein, N-terminal domain KU058_04255 PF01594 AI-2E family transporter KU058_04260 PF11638 DnaA N-terminal domain KU058_04260 PF00308 Bacterial dnaA protein KU058_04260 PF08299 Bacterial dnaA protein helix-turn-helix KU058_04290 PF00588 SpoU rRNA Methylase family KU058_04290 PF08032 RNA 2'-O ribose methyltransferase substrate binding KU058_04295 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KU058_04305 PF00691 OmpA family KU058_04310 PF04052 TolB amino-terminal domain KU058_04310 PF07676 WD40-like Beta Propeller Repeat KU058_04320 PF02472 Biopolymer transport protein ExbD/TolR KU058_04325 PF01618 MotA/TolQ/ExbB proton channel family KU058_04330 PF03061 Thioesterase superfamily KU058_04335 PF01546 Peptidase family M20/M25/M40 KU058_04335 PF07687 Peptidase dimerisation domain KU058_04340 PF05491 RuvB C-terminal winged helix domain KU058_04340 PF05496 Holliday junction DNA helicase RuvB P-loop domain KU058_04340 PF17864 RuvB AAA lid domain KU058_04345 PF07499 RuvA, C-terminal domain KU058_04345 PF01330 RuvA N terminal domain KU058_04350 PF01966 HD domain KU058_04355 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KU058_04355 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KU058_04355 PF02769 AIR synthase related protein, C-terminal domain KU058_04360 PF07690 Major Facilitator Superfamily KU058_04365 PF01784 NIF3 (NGG1p interacting factor 3) KU058_04370 PF00378 Enoyl-CoA hydratase/isomerase KU058_04375 PF00293 NUDIX domain KU058_04375 PF01467 Cytidylyltransferase-like KU058_04385 PF00578 AhpC/TSA family KU058_04400 PF06508 Queuosine biosynthesis protein QueC KU058_04410 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_04410 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KU058_04410 PF14602 Hexapeptide repeat of succinyl-transferase KU058_04420 PF03466 LysR substrate binding domain KU058_04420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_04425 PF12857 TOBE-like domain KU058_04425 PF00005 ABC transporter KU058_04430 PF00528 Binding-protein-dependent transport system inner membrane component KU058_04435 PF00528 Binding-protein-dependent transport system inner membrane component KU058_04450 PF01063 Amino-transferase class IV KU058_04455 PF02618 YceG-like family KU058_04460 PF02223 Thymidylate kinase KU058_04470 PF00890 FAD binding domain KU058_04470 PF02910 Fumarate reductase flavoprotein C-term KU058_04475 PF13180 PDZ domain KU058_04485 PF06421 GTP-binding protein LepA C-terminus KU058_04485 PF03144 Elongation factor Tu domain 2 KU058_04485 PF00679 Elongation factor G C-terminus KU058_04485 PF00009 Elongation factor Tu GTP binding domain KU058_04490 PF10502 Signal peptidase, peptidase S26 KU058_04500 PF00035 Double-stranded RNA binding motif KU058_04500 PF14622 Ribonuclease-III-like KU058_04505 PF07650 KH domain KU058_04505 PF01926 50S ribosome-binding GTPase KU058_04515 PF02565 Recombination protein O C terminal KU058_04515 PF11967 Recombination protein O N terminal KU058_04520 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KU058_04525 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KU058_04530 PF00106 short chain dehydrogenase KU058_04560 PF00155 Aminotransferase class I and II KU058_04570 PF17151 Periplasmic sensor domain KU058_04570 PF00990 Diguanylate cyclase, GGDEF domain KU058_04580 PF17757 UvrB interaction domain KU058_04580 PF02151 UvrB/uvrC motif KU058_04580 PF04851 Type III restriction enzyme, res subunit KU058_04580 PF00271 Helicase conserved C-terminal domain KU058_04580 PF12344 Ultra-violet resistance protein B KU058_04590 PF00892 EamA-like transporter family KU058_04595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KU058_04595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KU058_04610 PF01018 GTP1/OBG KU058_04610 PF01926 50S ribosome-binding GTPase KU058_04615 PF00696 Amino acid kinase family KU058_04615 PF01472 PUA domain KU058_04625 PF07759 Protein of unknown function (DUF1615) KU058_04630 PF01207 Dihydrouridine synthase (Dus) KU058_04635 PF03060 Nitronate monooxygenase KU058_04650 PF02350 UDP-N-acetylglucosamine 2-epimerase KU058_04680 PF00875 DNA photolyase KU058_04680 PF03441 FAD binding domain of DNA photolyase KU058_04685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU058_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_04695 PF07943 Penicillin-binding protein 5, C-terminal domain KU058_04695 PF00768 D-alanyl-D-alanine carboxypeptidase KU058_04705 PF03971 Monomeric isocitrate dehydrogenase KU058_04710 PF00849 RNA pseudouridylate synthase KU058_04715 PF00180 Isocitrate/isopropylmalate dehydrogenase KU058_04735 PF06779 Uncharacterised MFS-type transporter YbfB KU058_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_04740 PF03466 LysR substrate binding domain KU058_04745 PF00375 Sodium:dicarboxylate symporter family KU058_04750 PF02567 Phenazine biosynthesis-like protein KU058_04755 PF00675 Insulinase (Peptidase family M16) KU058_04755 PF05193 Peptidase M16 inactive domain KU058_04780 PF02581 Thiamine monophosphate synthase KU058_04785 PF00202 Aminotransferase class-III KU058_04795 PF00849 RNA pseudouridylate synthase KU058_04800 PF00271 Helicase conserved C-terminal domain KU058_04800 PF18337 RapA N-terminal Tudor like domain KU058_04800 PF18339 RapA N-terminal Tudor like domain 1 KU058_04800 PF00176 SNF2 family N-terminal domain KU058_04800 PF12137 RNA polymerase recycling family C-terminal KU058_04810 PF00440 Bacterial regulatory proteins, tetR family KU058_04815 PF00970 Oxidoreductase FAD-binding domain KU058_04815 PF00111 2Fe-2S iron-sulfur cluster binding domain KU058_04815 PF00175 Oxidoreductase NAD-binding domain KU058_04820 PF00487 Fatty acid desaturase KU058_04830 PF17754 MftR C-terminal domain KU058_04830 PF00440 Bacterial regulatory proteins, tetR family KU058_04840 PF00202 Aminotransferase class-III KU058_04845 PF00282 Pyridoxal-dependent decarboxylase conserved domain KU058_04850 PF00171 Aldehyde dehydrogenase family KU058_04855 PF01037 Lrp/AsnC ligand binding domain KU058_04860 PF00205 Thiamine pyrophosphate enzyme, central domain KU058_04860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU058_04860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU058_04865 PF00324 Amino acid permease KU058_04870 PF12849 PBP superfamily domain KU058_04875 PF00528 Binding-protein-dependent transport system inner membrane component KU058_04880 PF00528 Binding-protein-dependent transport system inner membrane component KU058_04885 PF00005 ABC transporter KU058_04890 PF01343 Peptidase family S49 KU058_04890 PF08496 Peptidase family S49 N-terminal KU058_04905 PF08328 Adenylosuccinate lyase C-terminal KU058_04905 PF00206 Lyase KU058_04910 PF04356 Protein of unknown function (DUF489) KU058_04920 PF13344 Haloacid dehalogenase-like hydrolase KU058_04920 PF00293 NUDIX domain KU058_04925 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_04930 PF07943 Penicillin-binding protein 5, C-terminal domain KU058_04930 PF00768 D-alanyl-D-alanine carboxypeptidase KU058_04945 PF01975 Survival protein SurE KU058_04950 PF01476 LysM domain KU058_04950 PF01551 Peptidase family M23 KU058_04955 PF03466 LysR substrate binding domain KU058_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_04960 PF13654 AAA domain KU058_04960 PF05362 Lon protease (S16) C-terminal proteolytic domain KU058_04965 PF07690 Major Facilitator Superfamily KU058_04970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU058_04975 PF13593 SBF-like CPA transporter family (DUF4137) KU058_04980 PF01197 Ribosomal protein L31 KU058_04995 PF04055 Radical SAM superfamily KU058_05000 PF01132 Elongation factor P (EF-P) OB domain KU058_05000 PF08207 Elongation factor P (EF-P) KOW-like domain KU058_05000 PF09285 Elongation factor P, C-terminal KU058_05005 PF02554 Carbon starvation protein CstA KU058_05005 PF13722 5TM C-terminal transporter carbon starvation CstA KU058_05010 PF04328 Selenoprotein, putative KU058_05020 PF00589 Phage integrase family KU058_05110 PF03354 Phage Terminase KU058_05115 PF04860 Phage portal protein KU058_05235 PF11798 IMS family HHH motif KU058_05235 PF11799 impB/mucB/samB family C-terminal domain KU058_05235 PF00817 impB/mucB/samB family KU058_05235 PF13438 Domain of unknown function (DUF4113) KU058_05265 PF13556 PucR C-terminal helix-turn-helix domain KU058_05265 PF17853 GGDEF-like domain KU058_05265 PF06018 CodY GAF-like domain KU058_05280 PF00171 Aldehyde dehydrogenase family KU058_05285 PF00324 Amino acid permease KU058_05290 PF03466 LysR substrate binding domain KU058_05290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_05295 PF02028 BCCT, betaine/carnitine/choline family transporter KU058_05300 PF02028 BCCT, betaine/carnitine/choline family transporter KU058_05305 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU058_05305 PF00355 Rieske [2Fe-2S] domain KU058_05310 PF00171 Aldehyde dehydrogenase family KU058_05315 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_05315 PF18113 Rubredoxin binding C-terminal domain KU058_05320 PF01266 FAD dependent oxidoreductase KU058_05320 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KU058_05340 PF00892 EamA-like transporter family KU058_05350 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system KU058_05355 PF00083 Sugar (and other) transporter KU058_05360 PF13378 Enolase C-terminal domain-like KU058_05360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KU058_05365 PF14765 Polyketide synthase dehydratase KU058_05365 PF00550 Phosphopantetheine attachment site KU058_05365 PF08659 KR domain KU058_05365 PF02801 Beta-ketoacyl synthase, C-terminal domain KU058_05365 PF00109 Beta-ketoacyl synthase, N-terminal domain KU058_05365 PF16197 Ketoacyl-synthetase C-terminal extension KU058_05365 PF08990 Erythronolide synthase docking KU058_05365 PF08240 Alcohol dehydrogenase GroES-like domain KU058_05365 PF00698 Acyl transferase domain KU058_05365 PF09277 Erythronolide synthase, docking KU058_05370 PF00440 Bacterial regulatory proteins, tetR family KU058_05390 PF17954 Quercetinase C-terminal cupin domain KU058_05390 PF02678 Pirin KU058_05400 PF13309 HTH domain KU058_05400 PF08348 YheO-like PAS domain KU058_05410 PF00550 Phosphopantetheine attachment site KU058_05410 PF00668 Condensation domain KU058_05410 PF00501 AMP-binding enzyme KU058_05410 PF13193 AMP-binding enzyme C-terminal domain KU058_05415 PF00550 Phosphopantetheine attachment site KU058_05415 PF13193 AMP-binding enzyme C-terminal domain KU058_05415 PF00975 Thioesterase domain KU058_05415 PF00668 Condensation domain KU058_05415 PF00501 AMP-binding enzyme KU058_05420 PF01032 FecCD transport family KU058_05425 PF01032 FecCD transport family KU058_05430 PF00005 ABC transporter KU058_05435 PF01497 Periplasmic binding protein KU058_05440 PF00593 TonB dependent receptor KU058_05440 PF07715 TonB-dependent Receptor Plug Domain KU058_05445 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KU058_05450 PF00550 Phosphopantetheine attachment site KU058_05450 PF00501 AMP-binding enzyme KU058_05450 PF00668 Condensation domain KU058_05455 PF00501 AMP-binding enzyme KU058_05455 PF13193 AMP-binding enzyme C-terminal domain KU058_05460 PF00550 Phosphopantetheine attachment site KU058_05460 PF00857 Isochorismatase family KU058_05465 PF00282 Pyridoxal-dependent decarboxylase conserved domain KU058_05475 PF00005 ABC transporter KU058_05480 PF00005 ABC transporter KU058_05485 PF00975 Thioesterase domain KU058_05495 PF00425 chorismate binding enzyme KU058_05505 PF01208 Uroporphyrinogen decarboxylase (URO-D) KU058_05510 PF05675 Protein of unknown function (DUF817) KU058_05525 PF00144 Beta-lactamase KU058_05535 PF01227 GTP cyclohydrolase I KU058_05540 PF00111 2Fe-2S iron-sulfur cluster binding domain KU058_05540 PF01799 [2Fe-2S] binding domain KU058_05545 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KU058_05545 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KU058_05560 PF00218 Indole-3-glycerol phosphate synthase KU058_05565 PF02885 Glycosyl transferase family, helical bundle domain KU058_05565 PF00591 Glycosyl transferase family, a/b domain KU058_05570 PF07715 TonB-dependent Receptor Plug Domain KU058_05570 PF00593 TonB dependent receptor KU058_05575 PF11838 ERAP1-like C-terminal domain KU058_05575 PF01433 Peptidase family M1 domain KU058_05580 PF00117 Glutamine amidotransferase class-I KU058_05940 PF00589 Phage integrase family KU058_05940 PF13356 Arm DNA-binding domain KU058_05950 PF00854 POT family KU058_05955 PF00120 Glutamine synthetase, catalytic domain KU058_05955 PF03951 Glutamine synthetase, beta-Grasp domain KU058_05960 PF04345 Chorismate lyase KU058_05965 PF01040 UbiA prenyltransferase family KU058_06000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KU058_06000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KU058_06005 PF01784 NIF3 (NGG1p interacting factor 3) KU058_06010 PF13180 PDZ domain KU058_06015 PF01743 Poly A polymerase head domain KU058_06015 PF12627 Probable RNA and SrmB- binding site of polymerase A KU058_06020 PF00390 Malic enzyme, N-terminal domain KU058_06020 PF03949 Malic enzyme, NAD binding domain KU058_06020 PF01515 Phosphate acetyl/butaryl transferase KU058_06025 PF00990 Diguanylate cyclase, GGDEF domain KU058_06025 PF03707 Bacterial signalling protein N terminal repeat KU058_06025 PF00563 EAL domain KU058_06030 PF04452 RNA methyltransferase KU058_06035 PF02219 Methylenetetrahydrofolate reductase KU058_06040 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KU058_06040 PF05221 S-adenosyl-L-homocysteine hydrolase KU058_06055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_06055 PF09317 Domain of unknown function (DUF1974) KU058_06055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_06060 PF04055 Radical SAM superfamily KU058_06065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU058_06065 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_06075 PF07690 Major Facilitator Superfamily KU058_06085 PF00557 Metallopeptidase family M24 KU058_06090 PF00318 Ribosomal protein S2 KU058_06095 PF00889 Elongation factor TS KU058_06105 PF12833 Helix-turn-helix domain KU058_06125 PF05036 Sporulation related domain KU058_06125 PF03330 Lytic transglycolase KU058_06130 PF13406 Transglycosylase SLT domain KU058_06135 PF01098 Cell cycle protein KU058_06145 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KU058_06145 PF14489 QueF-like protein KU058_06150 PF01061 ABC-2 type transporter KU058_06155 PF00005 ABC transporter KU058_06185 PF00464 Serine hydroxymethyltransferase KU058_06190 PF02321 Outer membrane efflux protein KU058_06195 PF00873 AcrB/AcrD/AcrF family KU058_06200 PF13533 Biotin-lipoyl like KU058_06205 PF03466 LysR substrate binding domain KU058_06205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_06210 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU058_06215 PF00528 Binding-protein-dependent transport system inner membrane component KU058_06220 PF00528 Binding-protein-dependent transport system inner membrane component KU058_06225 PF00005 ABC transporter KU058_06230 PF00893 Small Multidrug Resistance protein KU058_06235 PF00037 4Fe-4S binding domain KU058_06240 PF01136 Peptidase family U32 KU058_06240 PF16325 Peptidase family U32 C-terminal domain KU058_06245 PF00155 Aminotransferase class I and II KU058_06245 PF00392 Bacterial regulatory proteins, gntR family KU058_06250 PF02567 Phenazine biosynthesis-like protein KU058_06255 PF00175 Oxidoreductase NAD-binding domain KU058_06255 PF00970 Oxidoreductase FAD-binding domain KU058_06260 PF18389 TrmO C-terminal domain KU058_06260 PF01980 tRNA-methyltransferase O KU058_06270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KU058_06270 PF00437 Type II/IV secretion system protein KU058_06280 PF00486 Transcriptional regulatory protein, C terminal KU058_06280 PF00072 Response regulator receiver domain KU058_06285 PF00512 His Kinase A (phospho-acceptor) domain KU058_06285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_06285 PF08521 Two-component sensor kinase N-terminal KU058_06295 PF00293 NUDIX domain KU058_06305 PF14814 Bifunctional transglycosylase second domain KU058_06305 PF00912 Transglycosylase KU058_06305 PF00905 Penicillin binding protein transpeptidase domain KU058_06310 PF01513 ATP-NAD kinase KU058_06315 PF07023 Protein of unknown function (DUF1315) KU058_06320 PF02885 Glycosyl transferase family, helical bundle domain KU058_06320 PF00591 Glycosyl transferase family, a/b domain KU058_06325 PF00375 Sodium:dicarboxylate symporter family KU058_06330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_06330 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_06330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_06335 PF00756 Putative esterase KU058_06340 PF00800 Prephenate dehydratase KU058_06340 PF01817 Chorismate mutase type II KU058_06340 PF01842 ACT domain KU058_06345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KU058_06355 PF07687 Peptidase dimerisation domain KU058_06355 PF01546 Peptidase family M20/M25/M40 KU058_06360 PF12706 Beta-lactamase superfamily domain KU058_06370 PF03883 Peroxide stress protein YaaA KU058_06380 PF05690 Thiazole biosynthesis protein ThiG KU058_06390 PF04241 Protein of unknown function (DUF423) KU058_06395 PF04542 Sigma-70 region 2 KU058_06395 PF04545 Sigma-70, region 4 KU058_06395 PF00140 Sigma-70 factor, region 1.2 KU058_06405 PF00313 'Cold-shock' DNA-binding domain KU058_06410 PF00271 Helicase conserved C-terminal domain KU058_06410 PF00270 DEAD/DEAH box helicase KU058_06420 PF00881 Nitroreductase family KU058_06425 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KU058_06425 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KU058_06435 PF00589 Phage integrase family KU058_06530 PF01555 DNA methylase KU058_06760 PF01180 Dihydroorotate dehydrogenase KU058_06765 PF02674 Colicin V production protein KU058_06770 PF00156 Phosphoribosyl transferase domain KU058_06785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU058_06785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU058_06790 PF01435 Peptidase family M48 KU058_06795 PF09424 Yqey-like protein KU058_06800 PF01165 Ribosomal protein S21 KU058_06805 PF00814 Glycoprotease family KU058_06825 PF00069 Protein kinase domain KU058_06850 PF03466 LysR substrate binding domain KU058_06850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_06855 PF00202 Aminotransferase class-III KU058_06860 PF00171 Aldehyde dehydrogenase family KU058_06865 PF00324 Amino acid permease KU058_06895 PF04076 Bacterial OB fold (BOF) protein KU058_06920 PF00561 alpha/beta hydrolase fold KU058_06925 PF03616 Sodium/glutamate symporter KU058_06935 PF00392 Bacterial regulatory proteins, gntR family KU058_06935 PF07729 FCD domain KU058_06985 PF08946 Osmosensory transporter coiled coil KU058_06985 PF00083 Sugar (and other) transporter KU058_07005 PF00155 Aminotransferase class I and II KU058_07010 PF06826 Predicted Permease Membrane Region KU058_07010 PF02080 TrkA-C domain KU058_07020 PF04403 Paraquat-inducible protein A KU058_07025 PF02470 MlaD protein KU058_07035 PF13610 DDE domain KU058_07050 PF00440 Bacterial regulatory proteins, tetR family KU058_07050 PF17932 Tetracyclin repressor-like, C-terminal domain KU058_07055 PF02678 Pirin KU058_07055 PF17954 Quercetinase C-terminal cupin domain KU058_07065 PF00106 short chain dehydrogenase KU058_07070 PF00743 Flavin-binding monooxygenase-like KU058_07080 PF00860 Permease family KU058_07085 PF00962 Adenosine/AMP deaminase KU058_07090 PF01292 Prokaryotic cytochrome b561 KU058_07100 PF01351 Ribonuclease HII KU058_07105 PF02599 Global regulator protein family KU058_07110 PF00696 Amino acid kinase family KU058_07110 PF01842 ACT domain KU058_07110 PF13840 ACT domain KU058_07150 PF00929 Exonuclease KU058_07225 PF00145 C-5 cytosine-specific DNA methylase KU058_07235 PF01695 IstB-like ATP binding protein KU058_07480 PF00712 DNA polymerase III beta subunit, N-terminal domain KU058_07480 PF02767 DNA polymerase III beta subunit, central domain KU058_07480 PF02768 DNA polymerase III beta subunit, C-terminal domain KU058_07560 PF13411 MerR HTH family regulatory protein KU058_07575 PF07664 Ferrous iron transport protein B C terminus KU058_07575 PF02421 Ferrous iron transport protein B KU058_07575 PF07670 Nucleoside recognition KU058_07580 PF11798 IMS family HHH motif KU058_07580 PF11799 impB/mucB/samB family C-terminal domain KU058_07580 PF00817 impB/mucB/samB family KU058_07580 PF13438 Domain of unknown function (DUF4113) KU058_07585 PF00717 Peptidase S24-like KU058_07605 PF00589 Phage integrase family KU058_07605 PF13356 Arm DNA-binding domain KU058_07610 PF02272 DHHA1 domain KU058_07610 PF01411 tRNA synthetases class II (A) KU058_07610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KU058_07615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KU058_07615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KU058_07620 PF13393 Histidyl-tRNA synthetase KU058_07625 PF00709 Adenylosuccinate synthetase KU058_07640 PF00248 Aldo/keto reductase family KU058_07650 PF13545 Crp-like helix-turn-helix domain KU058_07650 PF00027 Cyclic nucleotide-binding domain KU058_07660 PF02566 OsmC-like protein KU058_07675 PF00004 ATPase family associated with various cellular activities (AAA) KU058_07675 PF07724 AAA domain (Cdc48 subfamily) KU058_07675 PF02861 Clp amino terminal domain, pathogenicity island component KU058_07675 PF10431 C-terminal, D2-small domain, of ClpB protein KU058_07675 PF17871 AAA lid domain KU058_07690 PF01170 Putative RNA methylase family UPF0020 KU058_07690 PF10672 S-adenosylmethionine-dependent methyltransferase KU058_07690 PF02926 THUMP domain KU058_07700 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KU058_07700 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KU058_07705 PF01979 Amidohydrolase family KU058_07710 PF00691 OmpA family KU058_07710 PF13488 Glycine zipper KU058_07720 PF13417 Glutathione S-transferase, N-terminal domain KU058_07720 PF00043 Glutathione S-transferase, C-terminal domain KU058_07725 PF02390 Putative methyltransferase KU058_07730 PF13737 Transposase DDE domain KU058_07740 PF00043 Glutathione S-transferase, C-terminal domain KU058_07740 PF02798 Glutathione S-transferase, N-terminal domain KU058_07750 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_07750 PF13192 Thioredoxin domain KU058_07770 PF10417 C-terminal domain of 1-Cys peroxiredoxin KU058_07770 PF00578 AhpC/TSA family KU058_07775 PF11898 Domain of unknown function (DUF3418) KU058_07775 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KU058_07775 PF00271 Helicase conserved C-terminal domain KU058_07775 PF04408 Helicase associated domain (HA2) KU058_07775 PF00270 DEAD/DEAH box helicase KU058_07780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KU058_07780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KU058_07790 PF07690 Major Facilitator Superfamily KU058_07795 PF03594 Benzoate membrane transport protein KU058_07800 PF00106 short chain dehydrogenase KU058_07805 PF00175 Oxidoreductase NAD-binding domain KU058_07805 PF00111 2Fe-2S iron-sulfur cluster binding domain KU058_07805 PF00970 Oxidoreductase FAD-binding domain KU058_07810 PF00866 Ring hydroxylating beta subunit KU058_07815 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU058_07815 PF00355 Rieske [2Fe-2S] domain KU058_07820 PF03466 LysR substrate binding domain KU058_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_07830 PF00403 Heavy-metal-associated domain KU058_07835 PF09278 MerR, DNA binding KU058_07835 PF00376 MerR family regulatory protein KU058_07870 PF02601 Exonuclease VII, large subunit KU058_07870 PF13742 OB-fold nucleic acid binding domain KU058_07900 PF01810 LysE type translocator KU058_07905 PF00313 'Cold-shock' DNA-binding domain KU058_07915 PF14748 Pyrroline-5-carboxylate reductase dimerisation KU058_07915 PF03807 NADP oxidoreductase coenzyme F420-dependent KU058_07940 PF07690 Major Facilitator Superfamily KU058_07945 PF01638 HxlR-like helix-turn-helix KU058_07970 PF09190 DALR domain KU058_07970 PF01406 tRNA synthetases class I (C) catalytic domain KU058_07975 PF01380 SIS domain KU058_07975 PF00571 CBS domain KU058_07990 PF03968 OstA-like protein KU058_07995 PF00005 ABC transporter KU058_07995 PF12399 Branched-chain amino acid ATP-binding cassette transporter KU058_08000 PF02321 Outer membrane efflux protein KU058_08005 PF03412 Peptidase C39 family KU058_08005 PF00664 ABC transporter transmembrane region KU058_08005 PF00005 ABC transporter KU058_08015 PF01205 Uncharacterized protein family UPF0029 KU058_08020 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_08030 PF01596 O-methyltransferase KU058_08040 PF11953 Domain of unknown function (DUF3470) KU058_08040 PF00037 4Fe-4S binding domain KU058_08050 PF00488 MutS domain V KU058_08050 PF05190 MutS family domain IV KU058_08050 PF05192 MutS domain III KU058_08050 PF05188 MutS domain II KU058_08050 PF01624 MutS domain I KU058_08055 PF01037 Lrp/AsnC ligand binding domain KU058_08060 PF00892 EamA-like transporter family KU058_08065 PF00990 Diguanylate cyclase, GGDEF domain KU058_08065 PF03707 Bacterial signalling protein N terminal repeat KU058_08065 PF00563 EAL domain KU058_08070 PF03279 Bacterial lipid A biosynthesis acyltransferase KU058_08080 PF07690 Major Facilitator Superfamily KU058_08100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU058_08100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU058_08120 PF13419 Haloacid dehalogenase-like hydrolase KU058_08130 PF13296 Putative type VI secretion system Rhs element Vgr KU058_08130 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU058_08130 PF04717 Type VI secretion system, phage-baseplate injector KU058_08135 PF03527 RHS protein KU058_08135 PF05593 RHS Repeat KU058_08150 PF03466 LysR substrate binding domain KU058_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_08155 PF01566 Natural resistance-associated macrophage protein KU058_08160 PF03746 LamB/YcsF family KU058_08165 PF07286 Protein of unknown function (DUF1445) KU058_08175 PF00289 Biotin carboxylase, N-terminal domain KU058_08175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU058_08175 PF02785 Biotin carboxylase C-terminal domain KU058_08175 PF00364 Biotin-requiring enzyme KU058_08180 PF00654 Voltage gated chloride channel KU058_08200 PF00440 Bacterial regulatory proteins, tetR family KU058_08210 PF00107 Zinc-binding dehydrogenase KU058_08210 PF13823 Alcohol dehydrogenase GroES-associated KU058_08210 PF08240 Alcohol dehydrogenase GroES-like domain KU058_08225 PF02785 Biotin carboxylase C-terminal domain KU058_08225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU058_08225 PF00289 Biotin carboxylase, N-terminal domain KU058_08230 PF02525 Flavodoxin-like fold KU058_08250 PF08753 NikR C terminal nickel binding domain KU058_08250 PF01402 Ribbon-helix-helix protein, copG family KU058_08255 PF01425 Amidase KU058_08260 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU058_08265 PF00005 ABC transporter KU058_08290 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KU058_08305 PF05947 Type VI secretion system, TssF KU058_08320 PF06761 Intracellular multiplication and human macrophage-killing KU058_08320 PF14331 ImcF-related N-terminal domain KU058_08320 PF06744 Type VI secretion protein IcmF C-terminal KU058_08330 PF00691 OmpA family KU058_08330 PF01389 OmpA-like transmembrane domain KU058_08340 PF00004 ATPase family associated with various cellular activities (AAA) KU058_08340 PF07724 AAA domain (Cdc48 subfamily) KU058_08340 PF10431 C-terminal, D2-small domain, of ClpB protein KU058_08340 PF17871 AAA lid domain KU058_08345 PF06812 ImpA, N-terminal, type VI secretion system KU058_08350 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KU058_08370 PF03466 LysR substrate binding domain KU058_08370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_08380 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KU058_08385 PF07690 Major Facilitator Superfamily KU058_08400 PF02677 Epoxyqueuosine reductase QueH KU058_08415 PF00376 MerR family regulatory protein KU058_08415 PF09278 MerR, DNA binding KU058_08425 PF00701 Dihydrodipicolinate synthetase family KU058_08435 PF00392 Bacterial regulatory proteins, gntR family KU058_08440 PF05544 Proline racemase KU058_08445 PF01266 FAD dependent oxidoreductase KU058_08455 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_08455 PF04324 BFD-like [2Fe-2S] binding domain KU058_08465 PF00083 Sugar (and other) transporter KU058_08470 PF00171 Aldehyde dehydrogenase family KU058_08475 PF13520 Amino acid permease KU058_08480 PF03313 Serine dehydratase alpha chain KU058_08480 PF03315 Serine dehydratase beta chain KU058_08485 PF00171 Aldehyde dehydrogenase family KU058_08485 PF01575 MaoC like domain KU058_08490 PF05138 Phenylacetic acid catabolic protein KU058_08495 PF06243 Phenylacetic acid degradation B KU058_08500 PF05138 Phenylacetic acid catabolic protein KU058_08505 PF01883 Iron-sulfur cluster assembly protein KU058_08510 PF00175 Oxidoreductase NAD-binding domain KU058_08510 PF00970 Oxidoreductase FAD-binding domain KU058_08510 PF00111 2Fe-2S iron-sulfur cluster binding domain KU058_08515 PF00378 Enoyl-CoA hydratase/isomerase KU058_08520 PF00378 Enoyl-CoA hydratase/isomerase KU058_08525 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KU058_08525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU058_08525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU058_08530 PF02803 Thiolase, C-terminal domain KU058_08530 PF00108 Thiolase, N-terminal domain KU058_08535 PF00501 AMP-binding enzyme KU058_08535 PF14535 AMP-binding enzyme C-terminal domain KU058_08540 PF07848 PaaX-like protein KU058_08540 PF08223 PaaX-like protein C-terminal domain KU058_08545 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_08550 PF03061 Thioesterase superfamily KU058_08585 PF00199 Catalase KU058_08590 PF01292 Prokaryotic cytochrome b561 KU058_08610 PF12697 Alpha/beta hydrolase family KU058_08615 PF01613 Flavin reductase like domain KU058_08620 PF00296 Luciferase-like monooxygenase KU058_08625 PF00171 Aldehyde dehydrogenase family KU058_08635 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU058_08645 PF00171 Aldehyde dehydrogenase family KU058_08650 PF02627 Carboxymuconolactone decarboxylase family KU058_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_08655 PF03466 LysR substrate binding domain KU058_08660 PF02525 Flavodoxin-like fold KU058_08665 PF09339 IclR helix-turn-helix domain KU058_08665 PF01614 Bacterial transcriptional regulator KU058_08670 PF01494 FAD binding domain KU058_08675 PF00392 Bacterial regulatory proteins, gntR family KU058_08675 PF07702 UTRA domain KU058_08685 PF08402 TOBE domain KU058_08685 PF00005 ABC transporter KU058_08710 PF00266 Aminotransferase class-V KU058_08715 PF13419 Haloacid dehalogenase-like hydrolase KU058_08720 PF07690 Major Facilitator Superfamily KU058_08725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_08725 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_08725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_08730 PF02515 CoA-transferase family III KU058_08735 PF09339 IclR helix-turn-helix domain KU058_08740 PF00378 Enoyl-CoA hydratase/isomerase KU058_08745 PF03060 Nitronate monooxygenase KU058_08750 PF07690 Major Facilitator Superfamily KU058_08755 PF09339 IclR helix-turn-helix domain KU058_08760 PF00108 Thiolase, N-terminal domain KU058_08760 PF02803 Thiolase, C-terminal domain KU058_08765 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KU058_08765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU058_08765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU058_08775 PF00378 Enoyl-CoA hydratase/isomerase KU058_08780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_08780 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_08780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_08785 PF07690 Major Facilitator Superfamily KU058_08790 PF01144 Coenzyme A transferase KU058_08795 PF01144 Coenzyme A transferase KU058_08805 PF07690 Major Facilitator Superfamily KU058_08815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_08815 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU058_08815 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_08815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_08830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_08830 PF03466 LysR substrate binding domain KU058_08835 PF00682 HMGL-like KU058_08840 PF02785 Biotin carboxylase C-terminal domain KU058_08840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU058_08840 PF00364 Biotin-requiring enzyme KU058_08840 PF00289 Biotin carboxylase, N-terminal domain KU058_08840 PF18140 Propionyl-coenzyme A carboxylase BT domain KU058_08845 PF00378 Enoyl-CoA hydratase/isomerase KU058_08850 PF01039 Carboxyl transferase domain KU058_08855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_08855 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_08855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_08860 PF00440 Bacterial regulatory proteins, tetR family KU058_08865 PF13193 AMP-binding enzyme C-terminal domain KU058_08865 PF00501 AMP-binding enzyme KU058_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_08890 PF03466 LysR substrate binding domain KU058_08925 PF02464 Competence-damaged protein KU058_08925 PF00994 Probable molybdopterin binding domain KU058_08925 PF18146 Damage-inducible protein CinA KH domain KU058_08935 PF00199 Catalase KU058_08935 PF18011 C-terminal domain found in long catalases KU058_08935 PF06628 Catalase-related immune-responsive KU058_08960 PF00717 Peptidase S24-like KU058_08970 PF13404 AsnC-type helix-turn-helix domain KU058_08970 PF01037 Lrp/AsnC ligand binding domain KU058_08980 PF00512 His Kinase A (phospho-acceptor) domain KU058_08980 PF09308 LuxQ, periplasmic KU058_08980 PF00072 Response regulator receiver domain KU058_08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_08985 PF00072 Response regulator receiver domain KU058_09000 PF00528 Binding-protein-dependent transport system inner membrane component KU058_09005 PF00528 Binding-protein-dependent transport system inner membrane component KU058_09010 PF00005 ABC transporter KU058_09015 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU058_09020 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU058_09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_09030 PF03466 LysR substrate binding domain KU058_09035 PF01810 LysE type translocator KU058_09045 PF00266 Aminotransferase class-V KU058_09055 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_09060 PF00581 Rhodanese-like domain KU058_09070 PF03466 LysR substrate binding domain KU058_09070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_09075 PF02798 Glutathione S-transferase, N-terminal domain KU058_09080 PF02798 Glutathione S-transferase, N-terminal domain KU058_09080 PF14834 Glutathione S-transferase, C-terminal domain KU058_09085 PF03466 LysR substrate binding domain KU058_09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_09090 PF03788 LrgA family KU058_09095 PF04172 LrgB-like family KU058_09100 PF00155 Aminotransferase class I and II KU058_09100 PF00392 Bacterial regulatory proteins, gntR family KU058_09115 PF07690 Major Facilitator Superfamily KU058_09120 PF16957 Malonate decarboxylase, alpha subunit, transporter KU058_09125 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KU058_09130 PF06857 Malonate decarboxylase delta subunit (MdcD) KU058_09135 PF01039 Carboxyl transferase domain KU058_09145 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KU058_09150 PF00698 Acyl transferase domain KU058_09165 PF03466 LysR substrate binding domain KU058_09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_09170 PF00155 Aminotransferase class I and II KU058_09170 PF00392 Bacterial regulatory proteins, gntR family KU058_09180 PF02322 Cytochrome bd terminal oxidase subunit II KU058_09185 PF01654 Cytochrome bd terminal oxidase subunit I KU058_09195 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU058_09195 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_09195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_09200 PF00296 Luciferase-like monooxygenase KU058_09205 PF00083 Sugar (and other) transporter KU058_09215 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KU058_09220 PF00005 ABC transporter KU058_09225 PF00528 Binding-protein-dependent transport system inner membrane component KU058_09230 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KU058_09235 PF01177 Asp/Glu/Hydantoin racemase KU058_09240 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU058_09250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_09250 PF03466 LysR substrate binding domain KU058_09260 PF13382 Adenine deaminase C-terminal domain KU058_09260 PF01979 Amidohydrolase family KU058_09270 PF03960 ArsC family KU058_09275 PF01022 Bacterial regulatory protein, arsR family KU058_09280 PF01758 Sodium Bile acid symporter family KU058_09285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_09285 PF03466 LysR substrate binding domain KU058_09300 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_09300 PF13192 Thioredoxin domain KU058_09315 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_09320 PF00588 SpoU rRNA Methylase family KU058_09325 PF14579 Helix-hairpin-helix motif KU058_09325 PF02811 PHP domain KU058_09325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KU058_09325 PF07733 Bacterial DNA polymerase III alpha NTPase domain KU058_09325 PF01336 OB-fold nucleic acid binding domain KU058_09330 PF00710 Asparaginase, N-terminal KU058_09330 PF17763 Glutaminase/Asparaginase C-terminal domain KU058_09335 PF00375 Sodium:dicarboxylate symporter family KU058_09340 PF00155 Aminotransferase class I and II KU058_09345 PF01641 SelR domain KU058_09350 PF00255 Glutathione peroxidase KU058_09355 PF12852 Cupin KU058_09355 PF12833 Helix-turn-helix domain KU058_09365 PF00155 Aminotransferase class I and II KU058_09370 PF08335 GlnD PII-uridylyltransferase KU058_09370 PF01966 HD domain KU058_09370 PF01909 Nucleotidyltransferase domain KU058_09375 PF02222 ATP-grasp domain KU058_09385 PF05437 Branched-chain amino acid transport protein (AzlD) KU058_09390 PF03591 AzlC protein KU058_09415 PF06071 Protein of unknown function (DUF933) KU058_09415 PF01926 50S ribosome-binding GTPase KU058_09420 PF00528 Binding-protein-dependent transport system inner membrane component KU058_09425 PF00005 ABC transporter KU058_09425 PF09383 NIL domain KU058_09430 PF03180 NLPA lipoprotein KU058_09435 PF03180 NLPA lipoprotein KU058_09440 PF00296 Luciferase-like monooxygenase KU058_09450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_09450 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU058_09465 PF00528 Binding-protein-dependent transport system inner membrane component KU058_09470 PF00528 Binding-protein-dependent transport system inner membrane component KU058_09475 PF00005 ABC transporter KU058_09490 PF01037 Lrp/AsnC ligand binding domain KU058_09495 PF01709 Transcriptional regulator KU058_09505 PF00440 Bacterial regulatory proteins, tetR family KU058_09525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_09525 PF03466 LysR substrate binding domain KU058_09535 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU058_09545 PF00892 EamA-like transporter family KU058_09565 PF13953 PapC C-terminal domain KU058_09565 PF13954 PapC N-terminal domain KU058_09565 PF00577 Outer membrane usher protein KU058_09570 PF02753 Pili assembly chaperone PapD, C-terminal domain KU058_09570 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KU058_09575 PF16970 Type-1 fimbrial protein, A KU058_09590 PF06968 Biotin and Thiamin Synthesis associated domain KU058_09590 PF04055 Radical SAM superfamily KU058_09595 PF08331 Domain of unknown function (DUF1730) KU058_09600 PF03853 YjeF-related protein N-terminus KU058_09600 PF01256 Carbohydrate kinase KU058_09605 PF02075 Crossover junction endodeoxyribonuclease RuvC KU058_09620 PF00905 Penicillin binding protein transpeptidase domain KU058_09640 PF02772 S-adenosylmethionine synthetase, central domain KU058_09640 PF02773 S-adenosylmethionine synthetase, C-terminal domain KU058_09640 PF00438 S-adenosylmethionine synthetase, N-terminal domain KU058_09645 PF02779 Transketolase, pyrimidine binding domain KU058_09645 PF02780 Transketolase, C-terminal domain KU058_09645 PF00456 Transketolase, thiamine diphosphate binding domain KU058_09655 PF04264 YceI-like domain KU058_09665 PF09992 Phosphodiester glycosidase KU058_09675 PF05958 tRNA (Uracil-5-)-methyltransferase KU058_09680 PF04229 GrpB protein KU058_09685 PF00171 Aldehyde dehydrogenase family KU058_09685 PF01619 Proline dehydrogenase KU058_09685 PF14850 DNA-binding domain of Proline dehydrogenase KU058_09685 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KU058_09690 PF01037 Lrp/AsnC ligand binding domain KU058_09695 PF00474 Sodium:solute symporter family KU058_09700 PF02146 Sir2 family KU058_09705 PF01597 Glycine cleavage H-protein KU058_09710 PF12833 Helix-turn-helix domain KU058_09710 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KU058_09720 PF00664 ABC transporter transmembrane region KU058_09720 PF00005 ABC transporter KU058_09725 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KU058_09730 PF06912 Protein of unknown function (DUF1275) KU058_09735 PF00375 Sodium:dicarboxylate symporter family KU058_09750 PF08007 Cupin superfamily protein KU058_09755 PF02545 Maf-like protein KU058_09765 PF00162 Phosphoglycerate kinase KU058_09775 PF01116 Fructose-bisphosphate aldolase class-II KU058_09780 PF09312 SurA N-terminal domain KU058_09780 PF00639 PPIC-type PPIASE domain KU058_09785 PF04453 LPS transport system D KU058_09785 PF03968 OstA-like protein KU058_09790 PF01636 Phosphotransferase enzyme family KU058_09795 PF00483 Nucleotidyl transferase KU058_09800 PF02527 rRNA small subunit methyltransferase G KU058_09805 PF13614 AAA domain KU058_09810 PF17762 HTH domain found in ParB protein KU058_09810 PF02195 ParB-like nuclease domain KU058_09815 PF01618 MotA/TolQ/ExbB proton channel family KU058_09825 PF00664 ABC transporter transmembrane region KU058_09825 PF00005 ABC transporter KU058_09830 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KU058_09835 PF02348 Cytidylyltransferase KU058_09840 PF09115 DNA polymerase III, delta subunit, C terminal KU058_09850 PF01026 TatD related DNase KU058_09865 PF07963 Prokaryotic N-terminal methylation motif KU058_09865 PF02501 Type II secretion system (T2SS), protein I KU058_09870 PF07963 Prokaryotic N-terminal methylation motif KU058_09870 PF11612 Type II secretion system (T2SS), protein J KU058_09875 PF03934 Type II secretion system (T2SS), protein K KU058_09885 PF03167 Uracil DNA glycosylase superfamily KU058_09895 PF14437 MafB19-like deaminase KU058_09905 PF02224 Cytidylate kinase KU058_09910 PF00575 S1 RNA binding domain KU058_09915 PF00216 Bacterial DNA-binding protein KU058_09925 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KU058_09935 PF00743 Flavin-binding monooxygenase-like KU058_09945 PF03969 AFG1-like ATPase KU058_09950 PF01274 Malate synthase KU058_09960 PF02472 Biopolymer transport protein ExbD/TolR KU058_09965 PF02472 Biopolymer transport protein ExbD/TolR KU058_09970 PF01618 MotA/TolQ/ExbB proton channel family KU058_09980 PF07715 TonB-dependent Receptor Plug Domain KU058_09980 PF00593 TonB dependent receptor KU058_10000 PF01432 Peptidase family M3 KU058_10005 PF00528 Binding-protein-dependent transport system inner membrane component KU058_10010 PF00528 Binding-protein-dependent transport system inner membrane component KU058_10015 PF00005 ABC transporter KU058_10015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KU058_10030 PF00459 Inositol monophosphatase family KU058_10040 PF01649 Ribosomal protein S20 KU058_10045 PF13460 NAD(P)H-binding KU058_10050 PF03737 Aldolase/RraA KU058_10080 PF02559 CarD-like/TRCF domain KU058_10080 PF00271 Helicase conserved C-terminal domain KU058_10080 PF03461 TRCF domain KU058_10080 PF17757 UvrB interaction domain KU058_10080 PF00270 DEAD/DEAH box helicase KU058_10090 PF00211 Adenylate and Guanylate cyclase catalytic domain KU058_10095 PF00111 2Fe-2S iron-sulfur cluster binding domain KU058_10100 PF00012 Hsp70 protein KU058_10105 PF00226 DnaJ domain KU058_10105 PF07743 HSCB C-terminal oligomerisation domain KU058_10110 PF01521 Iron-sulphur cluster biosynthesis KU058_10115 PF01592 NifU-like N terminal domain KU058_10120 PF00266 Aminotransferase class-V KU058_10125 PF02082 Transcriptional regulator KU058_10140 PF00216 Bacterial DNA-binding protein KU058_10145 PF00639 PPIC-type PPIASE domain KU058_10145 PF09312 SurA N-terminal domain KU058_10150 PF12833 Helix-turn-helix domain KU058_10150 PF12852 Cupin KU058_10155 PF00487 Fatty acid desaturase KU058_10160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_10160 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_10160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_10165 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_10165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_10165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_10170 PF03109 ABC1 family KU058_10180 PF04073 Aminoacyl-tRNA editing domain KU058_10185 PF06276 Ferric iron reductase FhuF-like transporter KU058_10185 PF04183 IucA / IucC family KU058_10190 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KU058_10195 PF07690 Major Facilitator Superfamily KU058_10200 PF04183 IucA / IucC family KU058_10200 PF06276 Ferric iron reductase FhuF-like transporter KU058_10205 PF04183 IucA / IucC family KU058_10205 PF06276 Ferric iron reductase FhuF-like transporter KU058_10220 PF00593 TonB dependent receptor KU058_10220 PF07715 TonB-dependent Receptor Plug Domain KU058_10245 PF13419 Haloacid dehalogenase-like hydrolase KU058_10255 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KU058_10260 PF02277 Phosphoribosyltransferase KU058_10275 PF02654 Cobalamin-5-phosphate synthase KU058_10280 PF00793 DAHP synthetase I family KU058_10285 PF01925 Sulfite exporter TauE/SafE KU058_10305 PF07715 TonB-dependent Receptor Plug Domain KU058_10305 PF00593 TonB dependent receptor KU058_10310 PF02684 Lipid-A-disaccharide synthetase KU058_10320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU058_10325 PF00005 ABC transporter KU058_10360 PF01230 HIT domain KU058_10390 PF08241 Methyltransferase domain KU058_10395 PF00561 alpha/beta hydrolase fold KU058_10400 PF01053 Cys/Met metabolism PLP-dependent enzyme KU058_10410 PF02575 YbaB/EbfC DNA-binding family KU058_10415 PF02132 RecR protein KU058_10415 PF13662 Toprim domain KU058_10420 PF00570 HRDC domain KU058_10420 PF01612 3'-5' exonuclease KU058_10440 PF05166 YcgL domain KU058_10450 PF00004 ATPase family associated with various cellular activities (AAA) KU058_10450 PF01434 Peptidase family M41 KU058_10450 PF17862 AAA+ lid domain KU058_10460 PF00291 Pyridoxal-phosphate dependent enzyme KU058_10465 PF05175 Methyltransferase small domain KU058_10470 PF01264 Chorismate synthase KU058_10475 PF08448 PAS fold KU058_10475 PF00990 Diguanylate cyclase, GGDEF domain KU058_10490 PF04055 Radical SAM superfamily KU058_10495 PF00676 Dehydrogenase E1 component KU058_10500 PF02779 Transketolase, pyrimidine binding domain KU058_10500 PF02780 Transketolase, C-terminal domain KU058_10505 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU058_10505 PF00364 Biotin-requiring enzyme KU058_10505 PF02817 e3 binding domain KU058_10510 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_10510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU058_10515 PF00106 short chain dehydrogenase KU058_10520 PF08240 Alcohol dehydrogenase GroES-like domain KU058_10520 PF00107 Zinc-binding dehydrogenase KU058_10525 PF01062 Bestrophin, RFP-TM, chloride channel KU058_10530 PF00158 Sigma-54 interaction domain KU058_10530 PF02954 Bacterial regulatory protein, Fis family KU058_10530 PF00072 Response regulator receiver domain KU058_10535 PF04273 Putative phosphatase (DUF442) KU058_10535 PF00753 Metallo-beta-lactamase superfamily KU058_10540 PF00753 Metallo-beta-lactamase superfamily KU058_10540 PF04273 Putative phosphatase (DUF442) KU058_10545 PF01925 Sulfite exporter TauE/SafE KU058_10560 PF06445 GyrI-like small molecule binding domain KU058_10560 PF12833 Helix-turn-helix domain KU058_10565 PF01638 HxlR-like helix-turn-helix KU058_10570 PF02525 Flavodoxin-like fold KU058_10580 PF00392 Bacterial regulatory proteins, gntR family KU058_10580 PF07702 UTRA domain KU058_10595 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KU058_10600 PF00528 Binding-protein-dependent transport system inner membrane component KU058_10605 PF00005 ABC transporter KU058_10620 PF00083 Sugar (and other) transporter KU058_10625 PF07715 TonB-dependent Receptor Plug Domain KU058_10625 PF00593 TonB dependent receptor KU058_10630 PF10415 Fumarase C C-terminus KU058_10630 PF00206 Lyase KU058_10645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_10645 PF03466 LysR substrate binding domain KU058_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_10650 PF03466 LysR substrate binding domain KU058_10655 PF00108 Thiolase, N-terminal domain KU058_10655 PF02803 Thiolase, C-terminal domain KU058_10660 PF02667 Short chain fatty acid transporter KU058_10665 PF01144 Coenzyme A transferase KU058_10670 PF01144 Coenzyme A transferase KU058_10675 PF03466 LysR substrate binding domain KU058_10675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_10700 PF12833 Helix-turn-helix domain KU058_10700 PF06719 AraC-type transcriptional regulator N-terminus KU058_10705 PF07690 Major Facilitator Superfamily KU058_10710 PF01738 Dienelactone hydrolase family KU058_10725 PF01613 Flavin reductase like domain KU058_10735 PF14525 AraC-binding-like domain KU058_10735 PF12833 Helix-turn-helix domain KU058_10740 PF00175 Oxidoreductase NAD-binding domain KU058_10740 PF00111 2Fe-2S iron-sulfur cluster binding domain KU058_10740 PF00970 Oxidoreductase FAD-binding domain KU058_10745 PF00866 Ring hydroxylating beta subunit KU058_10750 PF00355 Rieske [2Fe-2S] domain KU058_10750 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU058_10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_10755 PF03459 TOBE domain KU058_10765 PF00528 Binding-protein-dependent transport system inner membrane component KU058_10770 PF00005 ABC transporter KU058_10770 PF03459 TOBE domain KU058_10860 PF10124 Mu-like prophage major head subunit gpT KU058_10875 PF05069 Phage virion morphogenesis family KU058_10880 PF04233 Phage Mu protein F like protein KU058_10885 PF06074 Protein of unknown function (DUF935) KU058_10900 PF03237 Terminase-like family KU058_10905 PF11985 Protein of unknown function (DUF3486) KU058_10935 PF10502 Signal peptidase, peptidase S26 KU058_10965 PF01471 Putative peptidoglycan binding domain KU058_10965 PF13401 AAA domain KU058_10995 PF00216 Bacterial DNA-binding protein KU058_11035 PF00106 short chain dehydrogenase KU058_11040 PF00857 Isochorismatase family KU058_11040 PF00550 Phosphopantetheine attachment site KU058_11050 PF00149 Calcineurin-like phosphoesterase KU058_11055 PF02503 Polyphosphate kinase middle domain KU058_11055 PF13090 Polyphosphate kinase C-terminal domain 2 KU058_11055 PF17941 Polyphosphate kinase C-terminal domain 1 KU058_11055 PF13089 Polyphosphate kinase N-terminal domain KU058_11060 PF08042 PqqA family KU058_11065 PF12706 Beta-lactamase superfamily domain KU058_11070 PF03070 TENA/THI-4/PQQC family KU058_11075 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KU058_11080 PF04055 Radical SAM superfamily KU058_11080 PF13186 Iron-sulfur cluster-binding domain KU058_11085 PF01244 Membrane dipeptidase (Peptidase family M19) KU058_11100 PF13091 PLD-like domain KU058_11115 PF00199 Catalase KU058_11125 PF00107 Zinc-binding dehydrogenase KU058_11125 PF08240 Alcohol dehydrogenase GroES-like domain KU058_11135 PF00419 Fimbrial protein KU058_11140 PF13953 PapC C-terminal domain KU058_11140 PF13954 PapC N-terminal domain KU058_11140 PF00577 Outer membrane usher protein KU058_11145 PF02753 Pili assembly chaperone PapD, C-terminal domain KU058_11145 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KU058_11155 PF16970 Type-1 fimbrial protein, A KU058_11275 PF01266 FAD dependent oxidoreductase KU058_11290 PF01593 Flavin containing amine oxidoreductase KU058_11295 PF00743 Flavin-binding monooxygenase-like KU058_11300 PF12146 Serine aminopeptidase, S33 KU058_11305 PF02321 Outer membrane efflux protein KU058_11310 PF00873 AcrB/AcrD/AcrF family KU058_11315 PF00529 HlyD membrane-fusion protein of T1SS KU058_11315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU058_11320 PF00072 Response regulator receiver domain KU058_11320 PF00486 Transcriptional regulatory protein, C terminal KU058_11325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_11325 PF00512 His Kinase A (phospho-acceptor) domain KU058_11325 PF16527 Two-component sensor protein CpxA, periplasmic domain KU058_11325 PF00672 HAMP domain KU058_11340 PF12833 Helix-turn-helix domain KU058_11340 PF02311 AraC-like ligand binding domain KU058_11345 PF12146 Serine aminopeptidase, S33 KU058_11395 PF04607 Region found in RelA / SpoT proteins KU058_11395 PF13291 ACT domain KU058_11395 PF02824 TGS domain KU058_11405 PF01975 Survival protein SurE KU058_11430 PF07690 Major Facilitator Superfamily KU058_11435 PF13533 Biotin-lipoyl like KU058_11440 PF01425 Amidase KU058_11445 PF00196 Bacterial regulatory proteins, luxR family KU058_11515 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KU058_11520 PF14572 Phosphoribosyl synthetase-associated domain KU058_11520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KU058_11540 PF00005 ABC transporter KU058_11545 PF01032 FecCD transport family KU058_11555 PF00107 Zinc-binding dehydrogenase KU058_11555 PF08240 Alcohol dehydrogenase GroES-like domain KU058_11570 PF06719 AraC-type transcriptional regulator N-terminus KU058_11570 PF12833 Helix-turn-helix domain KU058_11575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU058_11575 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU058_11580 PF07690 Major Facilitator Superfamily KU058_11585 PF01370 NAD dependent epimerase/dehydratase family KU058_11590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_11590 PF03466 LysR substrate binding domain KU058_11600 PF00920 Dehydratase family KU058_11605 PF00171 Aldehyde dehydrogenase family KU058_11620 PF00529 HlyD membrane-fusion protein of T1SS KU058_11620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU058_11640 PF03737 Aldolase/RraA KU058_11645 PF01842 ACT domain KU058_11645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU058_11645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU058_11650 PF07690 Major Facilitator Superfamily KU058_11670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_11670 PF03466 LysR substrate binding domain KU058_11680 PF08450 SMP-30/Gluconolactonase/LRE-like region KU058_11685 PF07702 UTRA domain KU058_11685 PF00392 Bacterial regulatory proteins, gntR family KU058_11695 PF04909 Amidohydrolase KU058_11700 PF07690 Major Facilitator Superfamily KU058_11715 PF13332 Hemagglutinin repeat KU058_11715 PF05860 haemagglutination activity domain KU058_11715 PF04829 Pre-toxin domain with VENN motif KU058_11715 PF13018 Extended Signal Peptide of Type V secretion system KU058_11720 PF08479 POTRA domain, ShlB-type KU058_11720 PF17287 POTRA domain KU058_11720 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KU058_11730 PF07687 Peptidase dimerisation domain KU058_11730 PF01546 Peptidase family M20/M25/M40 KU058_11740 PF00999 Sodium/hydrogen exchanger family KU058_11740 PF02254 TrkA-N domain KU058_11745 PF07995 Glucose / Sorbosone dehydrogenase KU058_11750 PF03466 LysR substrate binding domain KU058_11750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_11755 PF00857 Isochorismatase family KU058_11765 PF00440 Bacterial regulatory proteins, tetR family KU058_11765 PF08359 YsiA-like protein, C-terminal region KU058_11770 PF12706 Beta-lactamase superfamily domain KU058_11780 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_11790 PF09278 MerR, DNA binding KU058_11790 PF00376 MerR family regulatory protein KU058_11795 PF01872 RibD C-terminal domain KU058_11800 PF00106 short chain dehydrogenase KU058_11805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU058_11805 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_11810 PF01047 MarR family KU058_11815 PF07859 alpha/beta hydrolase fold KU058_11830 PF00199 Catalase KU058_11830 PF06628 Catalase-related immune-responsive KU058_11835 PF00561 alpha/beta hydrolase fold KU058_11845 PF00171 Aldehyde dehydrogenase family KU058_11865 PF00474 Sodium:solute symporter family KU058_11870 PF04341 Protein of unknown function, DUF485 KU058_11875 PF13193 AMP-binding enzyme C-terminal domain KU058_11875 PF00501 AMP-binding enzyme KU058_11880 PF00158 Sigma-54 interaction domain KU058_11880 PF06506 Propionate catabolism activator KU058_11880 PF02954 Bacterial regulatory protein, Fis family KU058_11890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_11890 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_11890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_11910 PF00171 Aldehyde dehydrogenase family KU058_11920 PF07690 Major Facilitator Superfamily KU058_11925 PF00920 Dehydratase family KU058_11930 PF07729 FCD domain KU058_11930 PF00392 Bacterial regulatory proteins, gntR family KU058_11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_11940 PF03466 LysR substrate binding domain KU058_11945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KU058_11945 PF13378 Enolase C-terminal domain-like KU058_11950 PF02426 Muconolactone delta-isomerase KU058_11955 PF04444 Catechol dioxygenase N terminus KU058_11955 PF00775 Dioxygenase KU058_11960 PF01144 Coenzyme A transferase KU058_11965 PF01144 Coenzyme A transferase KU058_11970 PF02803 Thiolase, C-terminal domain KU058_11970 PF00108 Thiolase, N-terminal domain KU058_11975 PF12146 Serine aminopeptidase, S33 KU058_11980 PF01804 Penicillin amidase KU058_11985 PF00171 Aldehyde dehydrogenase family KU058_11995 PF01179 Copper amine oxidase, enzyme domain KU058_11995 PF07833 Copper amine oxidase N-terminal domain KU058_11995 PF02727 Copper amine oxidase, N2 domain KU058_11995 PF02728 Copper amine oxidase, N3 domain KU058_12000 PF02311 AraC-like ligand binding domain KU058_12000 PF12833 Helix-turn-helix domain KU058_12005 PF01613 Flavin reductase like domain KU058_12010 PF00175 Oxidoreductase NAD-binding domain KU058_12010 PF00111 2Fe-2S iron-sulfur cluster binding domain KU058_12025 PF00355 Rieske [2Fe-2S] domain KU058_12025 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU058_12040 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU058_12045 PF01425 Amidase KU058_12055 PF07690 Major Facilitator Superfamily KU058_12065 PF00106 short chain dehydrogenase KU058_12080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_12080 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_12080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_12085 PF03466 LysR substrate binding domain KU058_12090 PF09339 IclR helix-turn-helix domain KU058_12090 PF01614 Bacterial transcriptional regulator KU058_12095 PF00753 Metallo-beta-lactamase superfamily KU058_12105 PF04143 Sulphur transport KU058_12115 PF13360 PQQ-like domain KU058_12115 PF01011 PQQ enzyme repeat KU058_12120 PF04966 Carbohydrate-selective porin, OprB family KU058_12125 PF05048 Periplasmic copper-binding protein (NosD) KU058_12130 PF01487 Type I 3-dehydroquinase KU058_12135 PF00775 Dioxygenase KU058_12140 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KU058_12140 PF00775 Dioxygenase KU058_12145 PF02627 Carboxymuconolactone decarboxylase family KU058_12150 PF07690 Major Facilitator Superfamily KU058_12155 PF00561 alpha/beta hydrolase fold KU058_12160 PF10397 Adenylosuccinate lyase C-terminus KU058_12160 PF00206 Lyase KU058_12165 PF02803 Thiolase, C-terminal domain KU058_12165 PF00108 Thiolase, N-terminal domain KU058_12170 PF01144 Coenzyme A transferase KU058_12175 PF01144 Coenzyme A transferase KU058_12180 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KU058_12185 PF04977 Septum formation initiator KU058_12190 PF04239 Protein of unknown function (DUF421) KU058_12195 PF03952 Enolase, N-terminal domain KU058_12195 PF00113 Enolase, C-terminal TIM barrel domain KU058_12200 PF00793 DAHP synthetase I family KU058_12205 PF06418 CTP synthase N-terminus KU058_12205 PF00117 Glutamine amidotransferase class-I KU058_12235 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_12235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU058_12250 PF00793 DAHP synthetase I family KU058_12255 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KU058_12260 PF00004 ATPase family associated with various cellular activities (AAA) KU058_12260 PF07724 AAA domain (Cdc48 subfamily) KU058_12260 PF10431 C-terminal, D2-small domain, of ClpB protein KU058_12260 PF17871 AAA lid domain KU058_12260 PF02861 Clp amino terminal domain, pathogenicity island component KU058_12265 PF02617 ATP-dependent Clp protease adaptor protein ClpS KU058_12275 PF01118 Semialdehyde dehydrogenase, NAD binding domain KU058_12275 PF02774 Semialdehyde dehydrogenase, dimerisation domain KU058_12290 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KU058_12295 PF00291 Pyridoxal-phosphate dependent enzyme KU058_12295 PF00585 C-terminal regulatory domain of Threonine dehydratase KU058_12300 PF02080 TrkA-C domain KU058_12300 PF02254 TrkA-N domain KU058_12305 PF02386 Cation transport protein KU058_12310 PF02253 Phospholipase A1 KU058_12315 PF08367 Peptidase M16C associated KU058_12315 PF05193 Peptidase M16 inactive domain KU058_12315 PF00675 Insulinase (Peptidase family M16) KU058_12320 PF07715 TonB-dependent Receptor Plug Domain KU058_12320 PF00593 TonB dependent receptor KU058_12325 PF00294 pfkB family carbohydrate kinase KU058_12335 PF07290 Protein of unknown function (DUF1449) KU058_12350 PF01654 Cytochrome bd terminal oxidase subunit I KU058_12355 PF02322 Cytochrome bd terminal oxidase subunit II KU058_12360 PF08173 Membrane bound YbgT-like protein KU058_12375 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KU058_12385 PF00448 SRP54-type protein, GTPase domain KU058_12385 PF02881 SRP54-type protein, helical bundle domain KU058_12410 PF00478 IMP dehydrogenase / GMP reductase domain KU058_12410 PF00571 CBS domain KU058_12415 PF00202 Aminotransferase class-III KU058_12420 PF00462 Glutaredoxin KU058_12430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_12430 PF03466 LysR substrate binding domain KU058_12435 PF00557 Metallopeptidase family M24 KU058_12440 PF05525 Branched-chain amino acid transport protein KU058_12465 PF00391 PEP-utilising enzyme, mobile domain KU058_12465 PF02896 PEP-utilising enzyme, TIM barrel domain KU058_12465 PF00381 PTS HPr component phosphorylation site KU058_12465 PF05524 PEP-utilising enzyme, N-terminal KU058_12465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KU058_12470 PF00294 pfkB family carbohydrate kinase KU058_12475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KU058_12475 PF02378 Phosphotransferase system, EIIC KU058_12495 PF00563 EAL domain KU058_12495 PF00990 Diguanylate cyclase, GGDEF domain KU058_12495 PF03707 Bacterial signalling protein N terminal repeat KU058_12505 PF07995 Glucose / Sorbosone dehydrogenase KU058_12510 PF02586 SOS response associated peptidase (SRAP) KU058_12515 PF01740 STAS domain KU058_12515 PF00916 Sulfate permease family KU058_12520 PF00082 Subtilase family KU058_12520 PF05922 Peptidase inhibitor I9 KU058_12530 PF00324 Amino acid permease KU058_12535 PF00266 Aminotransferase class-V KU058_12540 PF01037 Lrp/AsnC ligand binding domain KU058_12565 PF13419 Haloacid dehalogenase-like hydrolase KU058_12570 PF01479 S4 domain KU058_12575 PF00154 recA bacterial DNA recombination protein KU058_12580 PF02631 RecX family KU058_12595 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_12595 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KU058_12600 PF07977 FabA-like domain KU058_12605 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_12605 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KU058_12615 PF07244 Surface antigen variable number repeat KU058_12615 PF01103 Surface antigen KU058_12620 PF17820 PDZ domain KU058_12620 PF13180 PDZ domain KU058_12620 PF02163 Peptidase family M50 KU058_12625 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KU058_12625 PF13288 DXP reductoisomerase C-terminal domain KU058_12625 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KU058_12635 PF01255 Putative undecaprenyl diphosphate synthase KU058_12640 PF01765 Ribosome recycling factor KU058_12645 PF00696 Amino acid kinase family KU058_12650 PF04055 Radical SAM superfamily KU058_12650 PF00919 Uncharacterized protein family UPF0004 KU058_12650 PF18693 TRAM domain KU058_12655 PF00989 PAS fold KU058_12655 PF00512 His Kinase A (phospho-acceptor) domain KU058_12655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_12660 PF00072 Response regulator receiver domain KU058_12660 PF00158 Sigma-54 interaction domain KU058_12660 PF02954 Bacterial regulatory protein, Fis family KU058_12680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KU058_12680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KU058_12690 PF02542 YgbB family KU058_12700 PF01266 FAD dependent oxidoreductase KU058_12720 PF10415 Fumarase C C-terminus KU058_12720 PF00206 Lyase KU058_12725 PF16363 GDP-mannose 4,6 dehydratase KU058_12730 PF02635 DsrE/DsrF-like family KU058_12750 PF00892 EamA-like transporter family KU058_12755 PF00392 Bacterial regulatory proteins, gntR family KU058_12755 PF00155 Aminotransferase class I and II KU058_12760 PF01638 HxlR-like helix-turn-helix KU058_12765 PF03453 MoeA N-terminal region (domain I and II) KU058_12765 PF00994 Probable molybdopterin binding domain KU058_12765 PF03454 MoeA C-terminal region (domain IV) KU058_12770 PF00994 Probable molybdopterin binding domain KU058_12770 PF01967 MoaC family KU058_12775 PF02391 MoaE protein KU058_12785 PF06463 Molybdenum Cofactor Synthesis C KU058_12785 PF04055 Radical SAM superfamily KU058_12790 PF01568 Molydopterin dinucleotide binding domain KU058_12790 PF00384 Molybdopterin oxidoreductase KU058_12790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU058_12795 PF12804 MobA-like NTP transferase domain KU058_12800 PF00384 Molybdopterin oxidoreductase KU058_12800 PF01568 Molydopterin dinucleotide binding domain KU058_12800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU058_12800 PF04324 BFD-like [2Fe-2S] binding domain KU058_12805 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU058_12805 PF18267 Rubredoxin NAD+ reductase C-terminal domain KU058_12805 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU058_12805 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_12805 PF04324 BFD-like [2Fe-2S] binding domain KU058_12810 PF13806 Rieske-like [2Fe-2S] domain KU058_12810 PF04324 BFD-like [2Fe-2S] binding domain KU058_12810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU058_12810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU058_12810 PF18267 Rubredoxin NAD+ reductase C-terminal domain KU058_12810 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_12820 PF00486 Transcriptional regulatory protein, C terminal KU058_12820 PF00072 Response regulator receiver domain KU058_12825 PF00005 ABC transporter KU058_12835 PF13438 Domain of unknown function (DUF4113) KU058_12835 PF00817 impB/mucB/samB family KU058_12835 PF11799 impB/mucB/samB family C-terminal domain KU058_12840 PF01220 Dehydroquinase class II KU058_12845 PF00364 Biotin-requiring enzyme KU058_12850 PF02785 Biotin carboxylase C-terminal domain KU058_12850 PF00289 Biotin carboxylase, N-terminal domain KU058_12850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU058_12860 PF12832 MFS_1 like family KU058_12930 PF01551 Peptidase family M23 KU058_12930 PF10145 Phage-related minor tail protein KU058_12930 PF01464 Transglycosylase SLT domain KU058_12950 PF03869 Arc-like DNA binding domain KU058_13160 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT KU058_13165 PF01726 LexA DNA binding domain KU058_13165 PF00717 Peptidase S24-like KU058_13235 PF01645 Conserved region in glutamate synthase KU058_13250 PF01565 FAD binding domain KU058_13250 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KU058_13255 PF01451 Low molecular weight phosphotyrosine protein phosphatase KU058_13265 PF00465 Iron-containing alcohol dehydrogenase KU058_13270 PF03061 Thioesterase superfamily KU058_13275 PF05506 Domain of unknown function (DUF756) KU058_13275 PF04185 Phosphoesterase family KU058_13280 PF12169 DNA polymerase III subunits gamma and tau domain III KU058_13280 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KU058_13280 PF12170 DNA polymerase III tau subunit V interacting with alpha KU058_13285 PF07690 Major Facilitator Superfamily KU058_13295 PF00144 Beta-lactamase KU058_13300 PF01575 MaoC like domain KU058_13310 PF02803 Thiolase, C-terminal domain KU058_13310 PF00108 Thiolase, N-terminal domain KU058_13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_13320 PF03466 LysR substrate binding domain KU058_13325 PF00923 Transaldolase/Fructose-6-phosphate aldolase KU058_13330 PF01810 LysE type translocator KU058_13335 PF01037 Lrp/AsnC ligand binding domain KU058_13340 PF03594 Benzoate membrane transport protein KU058_13345 PF02308 MgtC family KU058_13350 PF00689 Cation transporting ATPase, C-terminus KU058_13350 PF00690 Cation transporter/ATPase, N-terminus KU058_13375 PF00582 Universal stress protein family KU058_13380 PF00005 ABC transporter KU058_13380 PF12848 ABC transporter KU058_13400 PF07715 TonB-dependent Receptor Plug Domain KU058_13400 PF00593 TonB dependent receptor KU058_13435 PF00924 Mechanosensitive ion channel KU058_13440 PF07715 TonB-dependent Receptor Plug Domain KU058_13440 PF00593 TonB dependent receptor KU058_13445 PF00440 Bacterial regulatory proteins, tetR family KU058_13455 PF01037 Lrp/AsnC ligand binding domain KU058_13460 PF01817 Chorismate mutase type II KU058_13470 PF00106 short chain dehydrogenase KU058_13480 PF01433 Peptidase family M1 domain KU058_13480 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KU058_13480 PF11940 Domain of unknown function (DUF3458) Ig-like fold KU058_13495 PF02110 Hydroxyethylthiazole kinase family KU058_13500 PF06445 GyrI-like small molecule binding domain KU058_13510 PF05970 PIF1-like helicase KU058_13510 PF14493 Helix-turn-helix domain KU058_13515 PF00465 Iron-containing alcohol dehydrogenase KU058_13530 PF00171 Aldehyde dehydrogenase family KU058_13535 PF13520 Amino acid permease KU058_13540 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KU058_13545 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KU058_13550 PF00958 GMP synthase C terminal domain KU058_13550 PF02540 NAD synthase KU058_13550 PF00117 Glutamine amidotransferase class-I KU058_13555 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU058_13555 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KU058_13560 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KU058_13565 PF00149 Calcineurin-like phosphoesterase KU058_13575 PF00881 Nitroreductase family KU058_13585 PF17209 Hfq protein KU058_13595 PF01119 DNA mismatch repair protein, C-terminal domain KU058_13595 PF08676 MutL C terminal dimerisation domain KU058_13600 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KU058_13605 PF00849 RNA pseudouridylate synthase KU058_13605 PF01479 S4 domain KU058_13620 PF01479 S4 domain KU058_13620 PF00849 RNA pseudouridylate synthase KU058_13630 PF04284 Protein of unknown function (DUF441) KU058_13635 PF03466 LysR substrate binding domain KU058_13635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_13650 PF07690 Major Facilitator Superfamily KU058_13655 PF00520 Ion transport protein KU058_13655 PF00027 Cyclic nucleotide-binding domain KU058_13665 PF06434 Aconitate hydratase 2 N-terminus KU058_13665 PF11791 Aconitate B N-terminal domain KU058_13665 PF00330 Aconitase family (aconitate hydratase) KU058_13680 PF17243 POTRA domain TamA domain 1 KU058_13680 PF01103 Surface antigen KU058_13680 PF07244 Surface antigen variable number repeat KU058_13685 PF07690 Major Facilitator Superfamily KU058_13690 PF03232 Ubiquinone biosynthesis protein COQ7 KU058_13700 PF00120 Glutamine synthetase, catalytic domain KU058_13705 PF00486 Transcriptional regulatory protein, C terminal KU058_13705 PF00072 Response regulator receiver domain KU058_13710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_13710 PF00512 His Kinase A (phospho-acceptor) domain KU058_13710 PF13493 Domain of unknown function (DUF4118) KU058_13710 PF02702 Osmosensitive K+ channel His kinase sensor domain KU058_13715 PF02669 K+-transporting ATPase, c chain KU058_13725 PF03814 Potassium-transporting ATPase A subunit KU058_13740 PF03109 ABC1 family KU058_13745 PF00899 ThiF family KU058_13750 PF01613 Flavin reductase like domain KU058_13755 PF00501 AMP-binding enzyme KU058_13755 PF13193 AMP-binding enzyme C-terminal domain KU058_13760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_13760 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_13760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_13765 PF00106 short chain dehydrogenase KU058_13770 PF12833 Helix-turn-helix domain KU058_13775 PF09084 NMT1/THI5 like KU058_13780 PF00528 Binding-protein-dependent transport system inner membrane component KU058_13785 PF13847 Methyltransferase domain KU058_13785 PF17827 PrmC N-terminal domain KU058_13790 PF03462 PCRF domain KU058_13790 PF00472 RF-1 domain KU058_13800 PF03466 LysR substrate binding domain KU058_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_13815 PF00296 Luciferase-like monooxygenase KU058_13825 PF13994 PgaD-like protein KU058_13830 PF00535 Glycosyl transferase family 2 KU058_13835 PF14883 Hypothetical glycosyl hydrolase family 13 KU058_13835 PF01522 Polysaccharide deacetylase KU058_13845 PF03618 Kinase/pyrophosphorylase KU058_13850 PF02896 PEP-utilising enzyme, TIM barrel domain KU058_13850 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KU058_13850 PF00391 PEP-utilising enzyme, mobile domain KU058_13860 PF06481 COX Aromatic Rich Motif KU058_13860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KU058_13865 PF00115 Cytochrome C and Quinol oxidase polypeptide I KU058_13870 PF00510 Cytochrome c oxidase subunit III KU058_13875 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KU058_13880 PF01040 UbiA prenyltransferase family KU058_13885 PF01250 Ribosomal protein S6 KU058_13890 PF01084 Ribosomal protein S18 KU058_13895 PF03948 Ribosomal protein L9, C-terminal domain KU058_13895 PF01281 Ribosomal protein L9, N-terminal domain KU058_13900 PF00772 DnaB-like helicase N terminal domain KU058_13900 PF03796 DnaB-like helicase C terminal domain KU058_13905 PF01168 Alanine racemase, N-terminal domain KU058_13905 PF00842 Alanine racemase, C-terminal domain KU058_13915 PF08379 Bacterial transglutaminase-like N-terminal region KU058_13915 PF01841 Transglutaminase-like superfamily KU058_13925 PF14403 Circularly permuted ATP-grasp type 2 KU058_13935 PF01134 Glucose inhibited division protein A KU058_13935 PF13932 GidA associated domain KU058_13955 PF02954 Bacterial regulatory protein, Fis family KU058_13960 PF02142 MGS-like domain KU058_13960 PF01808 AICARFT/IMPCHase bienzyme KU058_13965 PF02844 Phosphoribosylglycinamide synthetase, N domain KU058_13965 PF02843 Phosphoribosylglycinamide synthetase, C domain KU058_13965 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KU058_13970 PF03180 NLPA lipoprotein KU058_13975 PF09383 NIL domain KU058_13975 PF00005 ABC transporter KU058_13980 PF00528 Binding-protein-dependent transport system inner membrane component KU058_13985 PF16123 Hydroxyacylglutathione hydrolase C-terminus KU058_13985 PF00753 Metallo-beta-lactamase superfamily KU058_13995 PF00375 Sodium:dicarboxylate symporter family KU058_14000 PF13610 DDE domain KU058_14010 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU058_14010 PF04717 Type VI secretion system, phage-baseplate injector KU058_14010 PF13296 Putative type VI secretion system Rhs element Vgr KU058_14030 PF03180 NLPA lipoprotein KU058_14035 PF05987 Bacterial protein of unknown function (DUF898) KU058_14050 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_14050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU058_14055 PF00764 Arginosuccinate synthase KU058_14060 PF00563 EAL domain KU058_14060 PF01590 GAF domain KU058_14060 PF00990 Diguanylate cyclase, GGDEF domain KU058_14060 PF00360 Phytochrome region KU058_14065 PF01979 Amidohydrolase family KU058_14070 PF00929 Exonuclease KU058_14080 PF07715 TonB-dependent Receptor Plug Domain KU058_14080 PF00593 TonB dependent receptor KU058_14085 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_14085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU058_14090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KU058_14090 PF00005 ABC transporter KU058_14095 PF12911 N-terminal TM domain of oligopeptide transport permease C KU058_14095 PF00528 Binding-protein-dependent transport system inner membrane component KU058_14100 PF00528 Binding-protein-dependent transport system inner membrane component KU058_14105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KU058_14110 PF01476 LysM domain KU058_14110 PF01476 LysM domain KU058_14110 PF01464 Transglycosylase SLT domain KU058_14110 PF01464 Transglycosylase SLT domain KU058_14115 PF00929 Exonuclease KU058_14125 PF09297 NADH pyrophosphatase zinc ribbon domain KU058_14125 PF00293 NUDIX domain KU058_14135 PF04972 BON domain KU058_14140 PF02021 Uncharacterised protein family UPF0102 KU058_14145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KU058_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_14155 PF03466 LysR substrate binding domain KU058_14160 PF01810 LysE type translocator KU058_14170 PF13411 MerR HTH family regulatory protein KU058_14180 PF01494 FAD binding domain KU058_14185 PF01494 FAD binding domain KU058_14190 PF00557 Metallopeptidase family M24 KU058_14190 PF05195 Aminopeptidase P, N-terminal domain KU058_14275 PF01464 Transglycosylase SLT domain KU058_14275 PF01551 Peptidase family M23 KU058_14275 PF10145 Phage-related minor tail protein KU058_14335 PF04860 Phage portal protein KU058_14430 PF00772 DnaB-like helicase N terminal domain KU058_14430 PF03796 DnaB-like helicase C terminal domain KU058_14445 PF01726 LexA DNA binding domain KU058_14445 PF00717 Peptidase S24-like KU058_14500 PF08019 Phosphoethanolamine transferase EptA/EptB KU058_14500 PF00884 Sulfatase KU058_14545 PF08525 Opacity-associated protein A N-terminal motif KU058_14545 PF01551 Peptidase family M23 KU058_14545 PF01476 LysM domain KU058_14870 PF01812 5-formyltetrahydrofolate cyclo-ligase family KU058_14875 PF00691 OmpA family KU058_14875 PF04355 SmpA / OmlA family KU058_14880 PF05658 Head domain of trimeric autotransporter adhesin KU058_14880 PF03895 YadA-like membrane anchor domain KU058_14880 PF05662 Coiled stalk of trimeric autotransporter adhesin KU058_14880 PF13018 Extended Signal Peptide of Type V secretion system KU058_14885 PF00004 ATPase family associated with various cellular activities (AAA) KU058_14885 PF05362 Lon protease (S16) C-terminal proteolytic domain KU058_14885 PF02190 ATP-dependent protease La (LON) substrate-binding domain KU058_14890 PF02590 Predicted SPOUT methyltransferase KU058_14895 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KU058_14905 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KU058_14905 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KU058_14910 PF04060 Putative Fe-S cluster KU058_14915 PF10576 Iron-sulfur binding domain of endonuclease III KU058_14915 PF00633 Helix-hairpin-helix motif KU058_14915 PF00730 HhH-GPD superfamily base excision DNA repair protein KU058_14925 PF05191 Adenylate kinase, active site lid KU058_14940 PF03717 Penicillin-binding Protein dimerisation domain KU058_14940 PF00905 Penicillin binding protein transpeptidase domain KU058_14955 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU058_14960 PF01730 UreF KU058_14965 PF02814 UreE urease accessory protein, N-terminal domain KU058_14965 PF05194 UreE urease accessory protein, C-terminal domain KU058_14975 PF00547 Urease, gamma subunit KU058_14980 PF01774 UreD urease accessory protein KU058_14995 PF00463 Isocitrate lyase family KU058_15000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_15000 PF03466 LysR substrate binding domain KU058_15005 PF00571 CBS domain KU058_15005 PF03471 Transporter associated domain KU058_15005 PF01595 Cyclin M transmembrane N-terminal domain KU058_15010 PF03600 Citrate transporter KU058_15025 PF00009 Elongation factor Tu GTP binding domain KU058_15030 PF01507 Phosphoadenosine phosphosulfate reductase family KU058_15040 PF14052 Capsule assembly protein Wzi KU058_15045 PF00152 tRNA synthetases class II (D, K and N) KU058_15045 PF01336 OB-fold nucleic acid binding domain KU058_15060 PF00301 Rubredoxin KU058_15065 PF18113 Rubredoxin binding C-terminal domain KU058_15065 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_15070 PF00561 alpha/beta hydrolase fold KU058_15075 PF03466 LysR substrate binding domain KU058_15075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_15085 PF02503 Polyphosphate kinase middle domain KU058_15085 PF17941 Polyphosphate kinase C-terminal domain 1 KU058_15085 PF13090 Polyphosphate kinase C-terminal domain 2 KU058_15085 PF13089 Polyphosphate kinase N-terminal domain KU058_15090 PF00912 Transglycosylase KU058_15095 PF01694 Rhomboid family KU058_15105 PF00005 ABC transporter KU058_15110 PF13472 GDSL-like Lipase/Acylhydrolase family KU058_15115 PF00484 Carbonic anhydrase KU058_15120 PF00561 alpha/beta hydrolase fold KU058_15130 PF07715 TonB-dependent Receptor Plug Domain KU058_15130 PF00593 TonB dependent receptor KU058_15135 PF01521 Iron-sulphur cluster biosynthesis KU058_15135 PF01106 NifU-like domain KU058_15145 PF00884 Sulfatase KU058_15150 PF03781 Sulfatase-modifying factor enzyme 1 KU058_15165 PF00291 Pyridoxal-phosphate dependent enzyme KU058_15170 PF01384 Phosphate transporter family KU058_15175 PF02310 B12 binding domain KU058_15175 PF02607 B12 binding domain KU058_15175 PF02965 Vitamin B12 dependent methionine synthase, activation domain KU058_15175 PF00809 Pterin binding enzyme KU058_15175 PF02574 Homocysteine S-methyltransferase KU058_15180 PF02779 Transketolase, pyrimidine binding domain KU058_15180 PF02780 Transketolase, C-terminal domain KU058_15185 PF00456 Transketolase, thiamine diphosphate binding domain KU058_15190 PF07690 Major Facilitator Superfamily KU058_15200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_15200 PF03466 LysR substrate binding domain KU058_15210 PF01263 Aldose 1-epimerase KU058_15215 PF07690 Major Facilitator Superfamily KU058_15220 PF12833 Helix-turn-helix domain KU058_15220 PF02311 AraC-like ligand binding domain KU058_15225 PF04960 Glutaminase KU058_15230 PF01327 Polypeptide deformylase KU058_15235 PF07690 Major Facilitator Superfamily KU058_15245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU058_15245 PF00205 Thiamine pyrophosphate enzyme, central domain KU058_15245 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU058_15250 PF00171 Aldehyde dehydrogenase family KU058_15255 PF03447 Homoserine dehydrogenase, NAD binding domain KU058_15255 PF01958 Domain of unknown function DUF108 KU058_15265 PF12697 Alpha/beta hydrolase family KU058_15275 PF07690 Major Facilitator Superfamily KU058_15280 PF14759 Reductase C-terminal KU058_15280 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_15285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU058_15295 PF00355 Rieske [2Fe-2S] domain KU058_15305 PF00355 Rieske [2Fe-2S] domain KU058_15310 PF09339 IclR helix-turn-helix domain KU058_15310 PF01614 Bacterial transcriptional regulator KU058_15325 PF00378 Enoyl-CoA hydratase/isomerase KU058_15335 PF00535 Glycosyl transferase family 2 KU058_15340 PF14883 Hypothetical glycosyl hydrolase family 13 KU058_15340 PF01522 Polysaccharide deacetylase KU058_15345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU058_15350 PF07152 YaeQ protein KU058_15355 PF00375 Sodium:dicarboxylate symporter family KU058_15360 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU058_15360 PF07683 Cobalamin synthesis protein cobW C-terminal domain KU058_15370 PF03061 Thioesterase superfamily KU058_15380 PF02028 BCCT, betaine/carnitine/choline family transporter KU058_15385 PF02028 BCCT, betaine/carnitine/choline family transporter KU058_15390 PF13977 BetI-type transcriptional repressor, C-terminal KU058_15390 PF00440 Bacterial regulatory proteins, tetR family KU058_15395 PF00171 Aldehyde dehydrogenase family KU058_15400 PF00732 GMC oxidoreductase KU058_15400 PF05199 GMC oxidoreductase KU058_15405 PF06039 Malate:quinone oxidoreductase (Mqo) KU058_15415 PF02574 Homocysteine S-methyltransferase KU058_15420 PF13520 Amino acid permease KU058_15445 PF01126 Heme oxygenase KU058_15455 PF04575 Protein of unknown function (DUF560) KU058_15465 PF07715 TonB-dependent Receptor Plug Domain KU058_15465 PF00593 TonB dependent receptor KU058_15475 PF08281 Sigma-70, region 4 KU058_15475 PF04542 Sigma-70 region 2 KU058_15485 PF00701 Dihydrodipicolinate synthetase family KU058_15490 PF00083 Sugar (and other) transporter KU058_15510 PF01026 TatD related DNase KU058_15525 PF07693 KAP family P-loop domain KU058_15545 PF00436 Single-strand binding protein family KU058_15600 PF13356 Arm DNA-binding domain KU058_15600 PF00589 Phage integrase family KU058_15640 PF10544 T5orf172 domain KU058_15645 PF13614 AAA domain KU058_15665 PF00905 Penicillin binding protein transpeptidase domain KU058_15750 PF02767 DNA polymerase III beta subunit, central domain KU058_15750 PF00712 DNA polymerase III beta subunit, N-terminal domain KU058_15750 PF02768 DNA polymerase III beta subunit, C-terminal domain KU058_15790 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KU058_15940 PF07007 Lysozyme inhibitor LprI KU058_15985 PF01695 IstB-like ATP binding protein KU058_15995 PF00145 C-5 cytosine-specific DNA methylase KU058_16040 PF01381 Helix-turn-helix KU058_16040 PF00717 Peptidase S24-like KU058_16075 PF00929 Exonuclease KU058_16150 PF07690 Major Facilitator Superfamily KU058_16155 PF13533 Biotin-lipoyl like KU058_16160 PF03061 Thioesterase superfamily KU058_16165 PF00490 Delta-aminolevulinic acid dehydratase KU058_16170 PF01266 FAD dependent oxidoreductase KU058_16175 PF08338 Domain of unknown function (DUF1731) KU058_16175 PF01370 NAD dependent epimerase/dehydratase family KU058_16195 PF00149 Calcineurin-like phosphoesterase KU058_16195 PF12320 Type 5 capsule protein repressor C-terminal domain KU058_16205 PF01168 Alanine racemase, N-terminal domain KU058_16210 PF00437 Type II/IV secretion system protein KU058_16215 PF00437 Type II/IV secretion system protein KU058_16220 PF01475 Ferric uptake regulator family KU058_16225 PF04355 SmpA / OmlA family KU058_16230 PF03658 RnfH family Ubiquitin KU058_16240 PF01814 Hemerythrin HHE cation binding domain KU058_16245 PF13230 Glutamine amidotransferases class-II KU058_16255 PF00696 Amino acid kinase family KU058_16260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU058_16260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU058_16260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU058_16260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU058_16265 PF00692 dUTPase KU058_16270 PF00580 UvrD/REP helicase N-terminal domain KU058_16270 PF13361 UvrD-like helicase C-terminal domain KU058_16275 PF00691 OmpA family KU058_16275 PF13488 Glycine zipper KU058_16280 PF01553 Acyltransferase KU058_16290 PF03775 Septum formation inhibitor MinC, C-terminal domain KU058_16295 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KU058_16300 PF03776 Septum formation topological specificity factor MinE KU058_16320 PF01810 LysE type translocator KU058_16325 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KU058_16325 PF17854 FtsK alpha domain KU058_16325 PF09397 Ftsk gamma domain KU058_16325 PF01580 FtsK/SpoIIIE family KU058_16330 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU058_16335 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KU058_16340 PF04377 Arginine-tRNA-protein transferase, C terminus KU058_16340 PF04376 Arginine-tRNA-protein transferase, N terminus KU058_16345 PF00583 Acetyltransferase (GNAT) family KU058_16360 PF03143 Elongation factor Tu C-terminal domain KU058_16360 PF00009 Elongation factor Tu GTP binding domain KU058_16360 PF03144 Elongation factor Tu domain 2 KU058_16365 PF00679 Elongation factor G C-terminus KU058_16365 PF14492 Elongation Factor G, domain II KU058_16365 PF00009 Elongation factor Tu GTP binding domain KU058_16365 PF03144 Elongation factor Tu domain 2 KU058_16365 PF03764 Elongation factor G, domain IV KU058_16370 PF00177 Ribosomal protein S7p/S5e KU058_16375 PF00164 Ribosomal protein S12/S23 KU058_16385 PF02801 Beta-ketoacyl synthase, C-terminal domain KU058_16385 PF00109 Beta-ketoacyl synthase, N-terminal domain KU058_16390 PF03653 Uncharacterised protein family (UPF0093) KU058_16395 PF05726 Pirin C-terminal cupin domain KU058_16395 PF02678 Pirin KU058_16405 PF00795 Carbon-nitrogen hydrolase KU058_16405 PF02540 NAD synthase KU058_16420 PF00175 Oxidoreductase NAD-binding domain KU058_16420 PF00111 2Fe-2S iron-sulfur cluster binding domain KU058_16420 PF00970 Oxidoreductase FAD-binding domain KU058_16425 PF00171 Aldehyde dehydrogenase family KU058_16430 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU058_16430 PF00355 Rieske [2Fe-2S] domain KU058_16435 PF07859 alpha/beta hydrolase fold KU058_16440 PF02028 BCCT, betaine/carnitine/choline family transporter KU058_16445 PF00180 Isocitrate/isopropylmalate dehydrogenase KU058_16450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_16450 PF03466 LysR substrate binding domain KU058_16470 PF00037 4Fe-4S binding domain KU058_16475 PF01467 Cytidylyltransferase-like KU058_16480 PF01668 SmpB protein KU058_16485 PF03358 NADPH-dependent FMN reductase KU058_16490 PF02578 Multi-copper polyphenol oxidoreductase laccase KU058_16495 PF01479 S4 domain KU058_16495 PF00849 RNA pseudouridylate synthase KU058_16500 PF13525 Outer membrane lipoprotein KU058_16505 PF08278 DNA primase DnaG DnaB-binding KU058_16505 PF08275 DNA primase catalytic core, N-terminal domain KU058_16505 PF01807 CHC2 zinc finger KU058_16505 PF10410 DnaB-helicase binding domain of primase KU058_16510 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KU058_16510 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KU058_16510 PF01488 Shikimate / quinate 5-dehydrogenase KU058_16520 PF03550 Outer membrane lipoprotein LolB KU058_16525 PF08544 GHMP kinases C terminal KU058_16525 PF00288 GHMP kinases N terminal domain KU058_16550 PF14572 Phosphoribosyl synthetase-associated domain KU058_16550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KU058_16555 PF01386 Ribosomal L25p family KU058_16560 PF01195 Peptidyl-tRNA hydrolase KU058_16565 PF02261 Aspartate decarboxylase KU058_16580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KU058_16590 PF08543 Phosphomethylpyrimidine kinase KU058_16590 PF02581 Thiamine monophosphate synthase KU058_16590 PF03070 TENA/THI-4/PQQC family KU058_16595 PF04972 BON domain KU058_16595 PF01476 LysM domain KU058_16600 PF00550 Phosphopantetheine attachment site KU058_16610 PF00698 Acyl transferase domain KU058_16615 PF01783 Ribosomal L32p protein family KU058_16620 PF02620 Large ribosomal RNA subunit accumulation protein YceD KU058_16625 PF04315 Elongation factor P hydroxylase KU058_16630 PF01300 Telomere recombination KU058_16635 PF02616 Segregation and condensation protein ScpA KU058_16640 PF04079 Segregation and condensation complex subunit ScpB KU058_16645 PF00849 RNA pseudouridylate synthase KU058_16645 PF01479 S4 domain KU058_16660 PF00155 Aminotransferase class I and II KU058_16665 PF04055 Radical SAM superfamily KU058_16665 PF06968 Biotin and Thiamin Synthesis associated domain KU058_16665 PF00202 Aminotransferase class-III KU058_16670 PF08241 Methyltransferase domain KU058_16670 PF12697 Alpha/beta hydrolase family KU058_16675 PF02358 Trehalose-phosphatase KU058_16680 PF00982 Glycosyltransferase family 20 KU058_16685 PF07690 Major Facilitator Superfamily KU058_16690 PF00210 Ferritin-like domain KU058_16695 PF00533 BRCA1 C Terminus (BRCT) domain KU058_16695 PF01653 NAD-dependent DNA ligase adenylation domain KU058_16695 PF03120 NAD-dependent DNA ligase OB-fold domain KU058_16695 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KU058_16695 PF12826 Helix-hairpin-helix motif KU058_16705 PF06470 SMC proteins Flexible Hinge Domain KU058_16705 PF02463 RecF/RecN/SMC N terminal domain KU058_16715 PF01925 Sulfite exporter TauE/SafE KU058_16725 PF03309 Type III pantothenate kinase KU058_16730 PF02978 Signal peptide binding domain KU058_16730 PF02881 SRP54-type protein, helical bundle domain KU058_16730 PF00448 SRP54-type protein, GTPase domain KU058_16740 PF01207 Dihydrouridine synthase (Dus) KU058_16770 PF00692 dUTPase KU058_16785 PF01048 Phosphorylase superfamily KU058_16790 PF10609 NUBPL iron-transfer P-loop NTPase KU058_16800 PF09334 tRNA synthetases class I (M) KU058_16800 PF01588 Putative tRNA binding domain KU058_16825 PF13533 Biotin-lipoyl like KU058_16830 PF00291 Pyridoxal-phosphate dependent enzyme KU058_16845 PF05552 Conserved TM helix KU058_16860 PF00970 Oxidoreductase FAD-binding domain KU058_16860 PF00175 Oxidoreductase NAD-binding domain KU058_16865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_16865 PF03466 LysR substrate binding domain KU058_16870 PF00313 'Cold-shock' DNA-binding domain KU058_16880 PF00361 Proton-conducting membrane transporter KU058_16885 PF00361 Proton-conducting membrane transporter KU058_16890 PF00361 Proton-conducting membrane transporter KU058_16890 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KU058_16895 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KU058_16900 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KU058_16905 PF12838 4Fe-4S dicluster domain KU058_16910 PF00146 NADH dehydrogenase KU058_16915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU058_16915 PF00384 Molybdopterin oxidoreductase KU058_16915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KU058_16920 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KU058_16920 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KU058_16920 PF10531 SLBB domain KU058_16930 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KU058_16930 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KU058_16935 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KU058_16940 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KU058_16945 PF17151 Periplasmic sensor domain KU058_16945 PF00990 Diguanylate cyclase, GGDEF domain KU058_16955 PF00672 HAMP domain KU058_16955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_16955 PF00512 His Kinase A (phospho-acceptor) domain KU058_16960 PF00072 Response regulator receiver domain KU058_16960 PF00486 Transcriptional regulatory protein, C terminal KU058_16970 PF03477 ATP cone domain KU058_16970 PF02867 Ribonucleotide reductase, barrel domain KU058_16970 PF00317 Ribonucleotide reductase, all-alpha domain KU058_16980 PF00268 Ribonucleotide reductase, small chain KU058_16990 PF13737 Transposase DDE domain KU058_17015 PF02567 Phenazine biosynthesis-like protein KU058_17035 PF01613 Flavin reductase like domain KU058_17040 PF08267 Cobalamin-independent synthase, N-terminal domain KU058_17040 PF01717 Cobalamin-independent synthase, Catalytic domain KU058_17050 PF03466 LysR substrate binding domain KU058_17050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_17055 PF01810 LysE type translocator KU058_17065 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KU058_17065 PF12833 Helix-turn-helix domain KU058_17070 PF07687 Peptidase dimerisation domain KU058_17070 PF01546 Peptidase family M20/M25/M40 KU058_17080 PF03466 LysR substrate binding domain KU058_17080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_17085 PF07690 Major Facilitator Superfamily KU058_17095 PF03466 LysR substrate binding domain KU058_17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_17100 PF14537 Cytochrome c3 KU058_17100 PF00890 FAD binding domain KU058_17110 PF02515 CoA-transferase family III KU058_17115 PF07690 Major Facilitator Superfamily KU058_17120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_17120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_17120 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_17125 PF03466 LysR substrate binding domain KU058_17125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_17130 PF00107 Zinc-binding dehydrogenase KU058_17130 PF08240 Alcohol dehydrogenase GroES-like domain KU058_17135 PF00962 Adenosine/AMP deaminase KU058_17160 PF02445 Quinolinate synthetase A protein KU058_17165 PF01960 ArgJ family KU058_17170 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KU058_17170 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU058_17175 PF00893 Small Multidrug Resistance protein KU058_17185 PF05275 Copper resistance protein B precursor (CopB) KU058_17190 PF00394 Multicopper oxidase KU058_17190 PF07731 Multicopper oxidase KU058_17190 PF07732 Multicopper oxidase KU058_17205 PF00834 Ribulose-phosphate 3 epimerase family KU058_17215 PF00756 Putative esterase KU058_17225 PF04445 Putative SAM-dependent methyltransferase KU058_17230 PF00814 Glycoprotease family KU058_17235 PF00132 Bacterial transferase hexapeptide (six repeats) KU058_17240 PF00293 NUDIX domain KU058_17280 PF04715 Anthranilate synthase component I, N terminal region KU058_17280 PF00425 chorismate binding enzyme KU058_17285 PF00155 Aminotransferase class I and II KU058_17290 PF00815 Histidinol dehydrogenase KU058_17295 PF01634 ATP phosphoribosyltransferase KU058_17300 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KU058_17305 PF01722 BolA-like protein KU058_17310 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KU058_17315 PF04552 Sigma-54, DNA binding domain KU058_17315 PF04963 Sigma-54 factor, core binding domain KU058_17315 PF00309 Sigma-54 factor, Activator interacting domain (AID) KU058_17360 PF00795 Carbon-nitrogen hydrolase KU058_17370 PF01047 MarR family KU058_17375 PF02566 OsmC-like protein KU058_17380 PF00437 Type II/IV secretion system protein KU058_17400 PF01367 5'-3' exonuclease, C-terminal SAM fold KU058_17400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KU058_17400 PF00476 DNA polymerase family A KU058_17400 PF01612 3'-5' exonuclease KU058_17405 PF02325 YGGT family KU058_17410 PF14748 Pyrroline-5-carboxylate reductase dimerisation KU058_17410 PF03807 NADP oxidoreductase coenzyme F420-dependent KU058_17415 PF01171 PP-loop family KU058_17415 PF09179 TilS substrate binding domain KU058_17415 PF11734 TilS substrate C-terminal domain KU058_17420 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KU058_17425 PF02541 Ppx/GppA phosphatase family KU058_17430 PF00085 Thioredoxin KU058_17435 PF07498 Rho termination factor, N-terminal domain KU058_17435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU058_17435 PF07497 Rho termination factor, RNA-binding domain KU058_17450 PF00216 Bacterial DNA-binding protein KU058_17455 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KU058_17455 PF01588 Putative tRNA binding domain KU058_17455 PF03147 Ferredoxin-fold anticodon binding domain KU058_17455 PF03483 B3/4 domain KU058_17455 PF03484 tRNA synthetase B5 domain KU058_17460 PF01409 tRNA synthetases class II core domain (F) KU058_17460 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KU058_17480 PF00453 Ribosomal protein L20 KU058_17485 PF01632 Ribosomal protein L35 KU058_17490 PF07690 Major Facilitator Superfamily KU058_17495 PF09335 SNARE associated Golgi protein KU058_17500 PF00043 Glutathione S-transferase, C-terminal domain KU058_17500 PF02798 Glutathione S-transferase, N-terminal domain KU058_17505 PF00707 Translation initiation factor IF-3, C-terminal domain KU058_17505 PF05198 Translation initiation factor IF-3, N-terminal domain KU058_17510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KU058_17510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU058_17510 PF02824 TGS domain KU058_17510 PF03129 Anticodon binding domain KU058_17515 PF00501 AMP-binding enzyme KU058_17515 PF13193 AMP-binding enzyme C-terminal domain KU058_17520 PF04751 Protein of unknown function (DUF615) KU058_17525 PF00381 PTS HPr component phosphorylation site KU058_17530 PF03668 P-loop ATPase protein family KU058_17535 PF02569 Pantoate-beta-alanine ligase KU058_17540 PF02548 Ketopantoate hydroxymethyltransferase KU058_17545 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KU058_17550 PF12627 Probable RNA and SrmB- binding site of polymerase A KU058_17550 PF12626 Polymerase A arginine-rich C-terminus KU058_17550 PF01743 Poly A polymerase head domain KU058_17560 PF03819 MazG nucleotide pyrophosphohydrolase domain KU058_17570 PF04607 Region found in RelA / SpoT proteins KU058_17570 PF13291 ACT domain KU058_17570 PF02824 TGS domain KU058_17575 PF05958 tRNA (Uracil-5-)-methyltransferase KU058_17585 PF00291 Pyridoxal-phosphate dependent enzyme KU058_17590 PF00072 Response regulator receiver domain KU058_17590 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KU058_17590 PF01627 Hpt domain KU058_17590 PF00512 His Kinase A (phospho-acceptor) domain KU058_17590 PF00672 HAMP domain KU058_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_17595 PF00378 Enoyl-CoA hydratase/isomerase KU058_17600 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU058_17600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU058_17605 PF01261 Xylose isomerase-like TIM barrel KU058_17615 PF00106 short chain dehydrogenase KU058_17620 PF02233 NAD(P) transhydrogenase beta subunit KU058_17625 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KU058_17630 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KU058_17630 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KU058_17635 PF00892 EamA-like transporter family KU058_17645 PF07690 Major Facilitator Superfamily KU058_17650 PF01207 Dihydrouridine synthase (Dus) KU058_17660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_17660 PF03466 LysR substrate binding domain KU058_17670 PF00899 ThiF family KU058_17680 PF00330 Aconitase family (aconitate hydratase) KU058_17680 PF00694 Aconitase C-terminal domain KU058_17685 PF01026 TatD related DNase KU058_17700 PF16658 Class II release factor RF3, C-terminal domain KU058_17700 PF00009 Elongation factor Tu GTP binding domain KU058_17700 PF03144 Elongation factor Tu domain 2 KU058_17720 PF03707 Bacterial signalling protein N terminal repeat KU058_17720 PF00990 Diguanylate cyclase, GGDEF domain KU058_17720 PF00563 EAL domain KU058_17725 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KU058_17725 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KU058_17730 PF10369 Small subunit of acetolactate synthase KU058_17735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU058_17735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU058_17735 PF00205 Thiamine pyrophosphate enzyme, central domain KU058_17745 PF08264 Anticodon-binding domain of tRNA KU058_17745 PF00133 tRNA synthetases class I (I, L, M and V) KU058_17745 PF13603 Leucyl-tRNA synthetase, Domain 2 KU058_17745 PF09334 tRNA synthetases class I (M) KU058_17760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU058_17765 PF00005 ABC transporter KU058_17765 PF02687 FtsX-like permease family KU058_17765 PF12704 MacB-like periplasmic core domain KU058_17770 PF02321 Outer membrane efflux protein KU058_17785 PF00929 Exonuclease KU058_17790 PF03193 RsgA GTPase KU058_17800 PF00462 Glutaredoxin KU058_17805 PF02556 Preprotein translocase subunit SecB KU058_17820 PF00109 Beta-ketoacyl synthase, N-terminal domain KU058_17820 PF02801 Beta-ketoacyl synthase, C-terminal domain KU058_17835 PF00109 Beta-ketoacyl synthase, N-terminal domain KU058_17835 PF02801 Beta-ketoacyl synthase, C-terminal domain KU058_17845 PF04820 Tryptophan halogenase KU058_17865 PF00221 Aromatic amino acid lyase KU058_17880 PF13193 AMP-binding enzyme C-terminal domain KU058_17880 PF00501 AMP-binding enzyme KU058_17890 PF00550 Phosphopantetheine attachment site KU058_17895 PF00550 Phosphopantetheine attachment site KU058_17910 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KU058_17910 PF01926 50S ribosome-binding GTPase KU058_17915 PF13360 PQQ-like domain KU058_17925 PF03129 Anticodon binding domain KU058_17925 PF13393 Histidyl-tRNA synthetase KU058_17930 PF04551 GcpE protein KU058_17935 PF13464 Domain of unknown function (DUF4115) KU058_17945 PF04055 Radical SAM superfamily KU058_17950 PF00334 Nucleoside diphosphate kinase KU058_17955 PF04384 Iron-sulphur cluster assembly KU058_17960 PF01569 PAP2 superfamily KU058_17965 PF00534 Glycosyl transferases group 1 KU058_17965 PF13439 Glycosyltransferase Family 4 KU058_17970 PF11818 C-terminal domain of tail specific protease (DUF3340) KU058_17970 PF00595 PDZ domain KU058_17970 PF03572 Peptidase family S41 KU058_17970 PF17804 Tail specific protease N-terminal domain KU058_17975 PF00933 Glycosyl hydrolase family 3 N terminal domain KU058_17985 PF00561 alpha/beta hydrolase fold KU058_17990 PF00171 Aldehyde dehydrogenase family KU058_17995 PF00171 Aldehyde dehydrogenase family KU058_18000 PF01202 Shikimate kinase KU058_18005 PF02447 GntP family permease KU058_18010 PF01081 KDPG and KHG aldolase KU058_18015 PF00920 Dehydratase family KU058_18020 PF00871 Acetokinase family KU058_18025 PF07085 DRTGG domain KU058_18025 PF01515 Phosphate acetyl/butaryl transferase KU058_18030 PF05681 Fumarate hydratase (Fumerase) KU058_18030 PF05683 Fumarase C-terminus KU058_18045 PF06689 ClpX C4-type zinc finger KU058_18045 PF07724 AAA domain (Cdc48 subfamily) KU058_18045 PF10431 C-terminal, D2-small domain, of ClpB protein KU058_18050 PF00574 Clp protease KU058_18055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU058_18055 PF05698 Bacterial trigger factor protein (TF) C-terminus KU058_18055 PF05697 Bacterial trigger factor protein (TF) KU058_18060 PF07715 TonB-dependent Receptor Plug Domain KU058_18060 PF00593 TonB dependent receptor KU058_18065 PF13640 2OG-Fe(II) oxygenase superfamily KU058_18065 PF18331 PKHD-type hydroxylase C-terminal domain KU058_18070 PF00682 HMGL-like KU058_18070 PF08502 LeuA allosteric (dimerisation) domain KU058_18075 PF00561 alpha/beta hydrolase fold KU058_18080 PF07021 Methionine biosynthesis protein MetW KU058_18080 PF00561 alpha/beta hydrolase fold KU058_18090 PF01725 Ham1 family KU058_18100 PF02416 mttA/Hcf106 family KU058_18105 PF02416 mttA/Hcf106 family KU058_18110 PF00902 Sec-independent protein translocase protein (TatC) KU058_18130 PF01790 Prolipoprotein diacylglyceryl transferase KU058_18145 PF00303 Thymidylate synthase KU058_18150 PF00186 Dihydrofolate reductase KU058_18160 PF01625 Peptide methionine sulfoxide reductase KU058_18170 PF01618 MotA/TolQ/ExbB proton channel family KU058_18180 PF01842 ACT domain KU058_18180 PF00551 Formyl transferase KU058_18190 PF00171 Aldehyde dehydrogenase family KU058_18195 PF00830 Ribosomal L28 family KU058_18200 PF00471 Ribosomal protein L33 KU058_18205 PF00999 Sodium/hydrogen exchanger family KU058_18205 PF02254 TrkA-N domain KU058_18225 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KU058_18230 PF00580 UvrD/REP helicase N-terminal domain KU058_18230 PF13361 UvrD-like helicase C-terminal domain KU058_18245 PF08272 Topoisomerase I zinc-ribbon-like KU058_18245 PF01131 DNA topoisomerase KU058_18245 PF01751 Toprim domain KU058_18245 PF01396 Topoisomerase DNA binding C4 zinc finger KU058_18255 PF01638 HxlR-like helix-turn-helix KU058_18260 PF08240 Alcohol dehydrogenase GroES-like domain KU058_18260 PF00107 Zinc-binding dehydrogenase KU058_18265 PF04102 SlyX KU058_18270 PF16326 ABC transporter C-terminal domain KU058_18270 PF12848 ABC transporter KU058_18270 PF00005 ABC transporter KU058_18275 PF01810 LysE type translocator KU058_18280 PF03279 Bacterial lipid A biosynthesis acyltransferase KU058_18290 PF00375 Sodium:dicarboxylate symporter family KU058_18300 PF02774 Semialdehyde dehydrogenase, dimerisation domain KU058_18300 PF01118 Semialdehyde dehydrogenase, NAD binding domain KU058_18320 PF01416 tRNA pseudouridine synthase KU058_18330 PF01176 Translation initiation factor 1A / IF-1 KU058_18345 PF00180 Isocitrate/isopropylmalate dehydrogenase KU058_18355 PF00694 Aconitase C-terminal domain KU058_18360 PF00330 Aconitase family (aconitate hydratase) KU058_18370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_18370 PF03466 LysR substrate binding domain KU058_18390 PF00293 NUDIX domain KU058_18395 PF01590 GAF domain KU058_18395 PF02896 PEP-utilising enzyme, TIM barrel domain KU058_18395 PF00391 PEP-utilising enzyme, mobile domain KU058_18395 PF05524 PEP-utilising enzyme, N-terminal KU058_18400 PF00141 Peroxidase KU058_18405 PF12706 Beta-lactamase superfamily domain KU058_18410 PF03466 LysR substrate binding domain KU058_18410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_18420 PF02798 Glutathione S-transferase, N-terminal domain KU058_18425 PF08279 HTH domain KU058_18425 PF13280 WYL domain KU058_18430 PF13419 Haloacid dehalogenase-like hydrolase KU058_18435 PF00849 RNA pseudouridylate synthase KU058_18435 PF01479 S4 domain KU058_18440 PF12111 Polyribonucleotide phosphorylase C terminal KU058_18440 PF10150 Ribonuclease E/G family KU058_18440 PF00575 S1 RNA binding domain KU058_18445 PF00501 AMP-binding enzyme KU058_18445 PF13193 AMP-binding enzyme C-terminal domain KU058_18460 PF03466 LysR substrate binding domain KU058_18460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU058_18465 PF00106 short chain dehydrogenase KU058_18470 PF04055 Radical SAM superfamily KU058_18470 PF06969 HemN C-terminal domain KU058_18480 PF01554 MatE KU058_18485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_18485 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_18485 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU058_18490 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU058_18490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_18495 PF03109 ABC1 family KU058_18500 PF01197 Ribosomal protein L31 KU058_18515 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KU058_18535 PF03884 DNA gyrase inhibitor YacG KU058_18540 PF00753 Metallo-beta-lactamase superfamily KU058_18545 PF00762 Ferrochelatase KU058_18555 PF01177 Asp/Glu/Hydantoin racemase KU058_18570 PF01206 Sulfurtransferase TusA KU058_18575 PF00571 CBS domain KU058_18575 PF03471 Transporter associated domain KU058_18580 PF00795 Carbon-nitrogen hydrolase KU058_18585 PF01588 Putative tRNA binding domain KU058_18595 PF07963 Prokaryotic N-terminal methylation motif KU058_18595 PF08334 Type II secretion system (T2SS), protein G KU058_18600 PF00482 Type II secretion system (T2SS), protein F KU058_18605 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KU058_18605 PF17764 3′ DNA-binding domain (3′BD) KU058_18605 PF18074 Primosomal protein N C-terminal domain KU058_18605 PF00270 DEAD/DEAH box helicase KU058_18605 PF00271 Helicase conserved C-terminal domain KU058_18610 PF00999 Sodium/hydrogen exchanger family KU058_18610 PF02254 TrkA-N domain KU058_18615 PF01430 Hsp33 protein KU058_18625 PF00226 DnaJ domain KU058_18625 PF01556 DnaJ C terminal domain KU058_18635 PF01544 CorA-like Mg2+ transporter protein KU058_18640 PF03725 3' exoribonuclease family, domain 2 KU058_18640 PF00575 S1 RNA binding domain KU058_18640 PF01138 3' exoribonuclease family, domain 1 KU058_18640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KU058_18640 PF00013 KH domain KU058_18645 PF00312 Ribosomal protein S15 KU058_18650 PF00144 Beta-lactamase KU058_18655 PF13538 UvrD-like helicase C-terminal domain KU058_18660 PF12705 PD-(D/E)XK nuclease superfamily KU058_18660 PF00580 UvrD/REP helicase N-terminal domain KU058_18660 PF13361 UvrD-like helicase C-terminal domain KU058_18665 PF17946 RecC C-terminal domain KU058_18675 PF03976 Polyphosphate kinase 2 (PPK2) KU058_18685 PF01209 ubiE/COQ5 methyltransferase family KU058_18695 PF03109 ABC1 family KU058_18700 PF01494 FAD binding domain KU058_18705 PF01502 Phosphoribosyl-AMP cyclohydrolase KU058_18720 PF13244 Domain of unknown function (DUF4040) KU058_18720 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KU058_18720 PF00361 Proton-conducting membrane transporter KU058_18720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KU058_18725 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KU058_18730 PF00361 Proton-conducting membrane transporter KU058_18735 PF01899 Na+/H+ ion antiporter subunit KU058_18740 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KU058_18745 PF03334 Na+/H+ antiporter subunit KU058_18750 PF02033 Ribosome-binding factor A KU058_18755 PF00009 Elongation factor Tu GTP binding domain KU058_18755 PF11987 Translation-initiation factor 2 KU058_18755 PF08364 Bacterial translation initiation factor IF-2 associated region KU058_18755 PF04760 Translation initiation factor IF-2, N-terminal region KU058_18760 PF13184 NusA-like KH domain KU058_18760 PF08529 NusA N-terminal domain KU058_18760 PF00575 S1 RNA binding domain KU058_18765 PF02576 RimP N-terminal domain KU058_18765 PF17384 RimP C-terminal SH3 domain KU058_18785 PF03840 Preprotein translocase SecG subunit KU058_18790 PF00121 Triosephosphate isomerase KU058_18795 PF13737 Transposase DDE domain KU058_18805 PF01478 Type IV leader peptidase family KU058_18805 PF06750 Bacterial Peptidase A24 N-terminal domain KU058_18810 PF01121 Dephospho-CoA kinase KU058_18820 PF00588 SpoU rRNA Methylase family KU058_18820 PF08032 RNA 2'-O ribose methyltransferase substrate binding KU058_18825 PF06865 Pyrimidine/purine nucleoside phosphorylase KU058_18835 PF02463 RecF/RecN/SMC N terminal domain KU058_18840 PF02622 Uncharacterized ACR, COG1678 KU058_18845 PF03652 Holliday junction resolvase KU058_18850 PF13533 Biotin-lipoyl like KU058_18875 PF02805 Metal binding domain of Ada KU058_18875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU058_18875 PF12833 Helix-turn-helix domain KU058_18875 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KU058_18880 PF01066 CDP-alcohol phosphatidyltransferase KU058_18890 PF08459 UvrC Helix-hairpin-helix N-terminal KU058_18890 PF01541 GIY-YIG catalytic domain KU058_18890 PF02151 UvrB/uvrC motif KU058_18910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU058_18910 PF00378 Enoyl-CoA hydratase/isomerase KU058_18910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU058_18915 PF02803 Thiolase, C-terminal domain KU058_18915 PF00108 Thiolase, N-terminal domain KU058_18935 PF00376 MerR family regulatory protein KU058_18935 PF09278 MerR, DNA binding KU058_18945 PF01323 DSBA-like thioredoxin domain KU058_18960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_18960 PF00183 Hsp90 protein KU058_18975 PF13726 Na+-H+ antiporter family KU058_18975 PF03553 Na+/H+ antiporter family KU058_18980 PF00561 alpha/beta hydrolase fold KU058_19000 PF04983 RNA polymerase Rpb1, domain 3 KU058_19000 PF05000 RNA polymerase Rpb1, domain 4 KU058_19000 PF04998 RNA polymerase Rpb1, domain 5 KU058_19000 PF04997 RNA polymerase Rpb1, domain 1 KU058_19000 PF00623 RNA polymerase Rpb1, domain 2 KU058_19005 PF04560 RNA polymerase Rpb2, domain 7 KU058_19005 PF04563 RNA polymerase beta subunit KU058_19005 PF04561 RNA polymerase Rpb2, domain 2 KU058_19005 PF04565 RNA polymerase Rpb2, domain 3 KU058_19005 PF10385 RNA polymerase beta subunit external 1 domain KU058_19005 PF00562 RNA polymerase Rpb2, domain 6 KU058_19010 PF00542 Ribosomal protein L7/L12 C-terminal domain KU058_19010 PF16320 Ribosomal protein L7/L12 dimerisation domain KU058_19015 PF00466 Ribosomal protein L10 KU058_19020 PF00687 Ribosomal protein L1p/L10e family KU058_19025 PF03946 Ribosomal protein L11, N-terminal domain KU058_19025 PF00298 Ribosomal protein L11, RNA binding domain KU058_19030 PF02357 Transcription termination factor nusG KU058_19030 PF00467 KOW motif KU058_19035 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KU058_19045 PF03144 Elongation factor Tu domain 2 KU058_19045 PF00009 Elongation factor Tu GTP binding domain KU058_19045 PF03143 Elongation factor Tu C-terminal domain KU058_19070 PF04715 Anthranilate synthase component I, N terminal region KU058_19070 PF00425 chorismate binding enzyme KU058_19075 PF13419 Haloacid dehalogenase-like hydrolase KU058_19080 PF12401 Protein of unknown function (DUF2662) KU058_19080 PF00498 FHA domain KU058_19085 PF00263 Bacterial type II and III secretion system protein KU058_19085 PF03958 Bacterial type II/III secretion system short domain KU058_19100 PF00816 H-NS histone family KU058_19125 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KU058_19125 PF03900 Porphobilinogen deaminase, C-terminal domain KU058_19130 PF00072 Response regulator receiver domain KU058_19130 PF04397 LytTr DNA-binding domain KU058_19135 PF07694 5TMR of 5TMR-LYT KU058_19135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_19135 PF06580 Histidine kinase KU058_19140 PF14698 Argininosuccinate lyase C-terminal KU058_19140 PF00206 Lyase KU058_19145 PF04362 Bacterial Fe(2+) trafficking KU058_19150 PF01895 PhoU domain KU058_19155 PF02321 Outer membrane efflux protein KU058_19160 PF00892 EamA-like transporter family KU058_19175 PF01964 Radical SAM ThiC family KU058_19175 PF13667 ThiC-associated domain KU058_19180 PF00293 NUDIX domain KU058_19185 PF00149 Calcineurin-like phosphoesterase KU058_19190 PF01258 Prokaryotic dksA/traR C4-type zinc finger KU058_19195 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU058_19200 PF01098 Cell cycle protein KU058_19205 PF02875 Mur ligase family, glutamate ligase domain KU058_19205 PF08245 Mur ligase middle domain KU058_19215 PF07670 Nucleoside recognition KU058_19215 PF02421 Ferrous iron transport protein B KU058_19215 PF07664 Ferrous iron transport protein B C terminus KU058_19225 PF02899 Phage integrase, N-terminal SAM-like domain KU058_19225 PF00589 Phage integrase family KU058_19230 PF10411 Disulfide bond isomerase protein N-terminus KU058_19230 PF13098 Thioredoxin-like domain KU058_19235 PF01842 ACT domain KU058_19235 PF00742 Homoserine dehydrogenase KU058_19235 PF03447 Homoserine dehydrogenase, NAD binding domain KU058_19240 PF00291 Pyridoxal-phosphate dependent enzyme KU058_19245 PF00768 D-alanyl-D-alanine carboxypeptidase KU058_19250 PF00196 Bacterial regulatory proteins, luxR family KU058_19250 PF00072 Response regulator receiver domain KU058_19255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU058_19255 PF00512 His Kinase A (phospho-acceptor) domain KU058_19260 PF02954 Bacterial regulatory protein, Fis family KU058_19260 PF00072 Response regulator receiver domain KU058_19260 PF00158 Sigma-54 interaction domain KU058_19265 PF03572 Peptidase family S41 KU058_19265 PF00595 PDZ domain KU058_19270 PF01676 Metalloenzyme superfamily KU058_19270 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KU058_19275 PF03739 Lipopolysaccharide export system permease LptF/LptG KU058_19285 PF00883 Cytosol aminopeptidase family, catalytic domain KU058_19285 PF02789 Cytosol aminopeptidase family, N-terminal domain KU058_19305 PF00677 Lumazine binding domain KU058_19315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KU058_19315 PF01872 RibD C-terminal domain KU058_19320 PF03477 ATP cone domain KU058_19325 PF00909 Ammonium Transporter Family KU058_19330 PF00543 Nitrogen regulatory protein P-II KU058_19340 PF01078 Magnesium chelatase, subunit ChlI KU058_19340 PF13335 Magnesium chelatase, subunit ChlI C-terminal KU058_19350 PF01740 STAS domain KU058_19350 PF00916 Sulfate permease family KU058_19355 PF00582 Universal stress protein family KU058_19385 PF00665 Integrase core domain KU058_19395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU058_19395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU058_19395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU058_19395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU058_19400 PF00809 Pterin binding enzyme KU058_19415 PF00665 Integrase core domain KU058_19440 PF02899 Phage integrase, N-terminal SAM-like domain KU058_19440 PF00589 Phage integrase family KU058_19475 PF00582 Universal stress protein family KU058_19495 PF00665 Integrase core domain KU058_19505 PF01078 Magnesium chelatase, subunit ChlI KU058_19505 PF13335 Magnesium chelatase, subunit ChlI C-terminal KU058_19510 PF00392 Bacterial regulatory proteins, gntR family KU058_19510 PF00155 Aminotransferase class I and II KU058_19520 PF00701 Dihydrodipicolinate synthetase family KU058_19530 PF03573 outer membrane porin, OprD family KU058_19535 PF00719 Inorganic pyrophosphatase KU058_19550 PF13193 AMP-binding enzyme C-terminal domain KU058_19550 PF00501 AMP-binding enzyme KU058_19555 PF03989 DNA gyrase C-terminal domain, beta-propeller KU058_19555 PF00521 DNA gyrase/topoisomerase IV, subunit A KU058_19560 PF07690 Major Facilitator Superfamily KU058_19565 PF03458 UPF0126 domain KU058_19570 PF02810 SEC-C motif KU058_19575 PF03471 Transporter associated domain KU058_19575 PF03741 Integral membrane protein TerC family KU058_19580 PF03641 Possible lysine decarboxylase KU058_19585 PF07690 Major Facilitator Superfamily KU058_19595 PF00817 impB/mucB/samB family KU058_19595 PF11799 impB/mucB/samB family C-terminal domain KU058_19595 PF11798 IMS family HHH motif KU058_19610 PF08497 Radical SAM N-terminal KU058_19610 PF04055 Radical SAM superfamily KU058_19610 PF11842 Domain of unknown function (DUF3362) KU058_19630 PF03358 NADPH-dependent FMN reductase KU058_19640 PF00291 Pyridoxal-phosphate dependent enzyme KU058_19675 PF00440 Bacterial regulatory proteins, tetR family KU058_19700 PF01327 Polypeptide deformylase KU058_19710 PF02481 DNA recombination-mediator protein A KU058_19710 PF17782 DprA winged helix domain KU058_19715 PF01300 Telomere recombination KU058_19720 PF00892 EamA-like transporter family KU058_19725 PF00440 Bacterial regulatory proteins, tetR family KU058_19730 PF07690 Major Facilitator Superfamily KU058_19740 PF00255 Glutathione peroxidase KU058_19750 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KU058_19755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU058_19755 PF02874 ATP synthase alpha/beta family, beta-barrel domain KU058_19760 PF00231 ATP synthase KU058_19765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU058_19765 PF00306 ATP synthase alpha/beta chain, C terminal domain KU058_19765 PF02874 ATP synthase alpha/beta family, beta-barrel domain KU058_19770 PF00213 ATP synthase delta (OSCP) subunit KU058_19775 PF00430 ATP synthase B/B' CF(0) KU058_19780 PF00137 ATP synthase subunit C KU058_19785 PF00119 ATP synthase A chain KU058_19805 PF00005 ABC transporter KU058_19810 PF00950 ABC 3 transport family KU058_19815 PF01810 LysE type translocator KU058_19820 PF04261 Dyp-type peroxidase family KU058_19830 PF03949 Malic enzyme, NAD binding domain KU058_19830 PF00390 Malic enzyme, N-terminal domain KU058_19835 PF03485 Arginyl tRNA synthetase N terminal domain KU058_19835 PF05746 DALR anticodon binding domain KU058_19835 PF00750 tRNA synthetases class I (R) KU058_19855 PF05726 Pirin C-terminal cupin domain KU058_19855 PF02678 Pirin KU058_19865 PF03551 Transcriptional regulator PadR-like family KU058_19870 PF13427 Domain of unknown function (DUF4111) KU058_19870 PF01909 Nucleotidyltransferase domain KU058_19875 PF00117 Glutamine amidotransferase class-I KU058_19875 PF00958 GMP synthase C terminal domain KU058_19875 PF02540 NAD synthase KU058_19880 PF04286 Protein of unknown function (DUF445) KU058_19885 PF07681 DoxX KU058_19890 PF09335 SNARE associated Golgi protein KU058_19905 PF13614 AAA domain KU058_19915 PF01722 BolA-like protein KU058_19930 PF01648 4'-phosphopantetheinyl transferase superfamily KU058_19935 PF12697 Alpha/beta hydrolase family KU058_19955 PF16197 Ketoacyl-synthetase C-terminal extension KU058_19955 PF00109 Beta-ketoacyl synthase, N-terminal domain KU058_19955 PF02801 Beta-ketoacyl synthase, C-terminal domain KU058_19955 PF08242 Methyltransferase domain KU058_19955 PF00550 Phosphopantetheine attachment site KU058_19955 PF14765 Polyketide synthase dehydratase KU058_19955 PF00975 Thioesterase domain KU058_19960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_19960 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_19960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_19965 PF00501 AMP-binding enzyme KU058_19970 PF03472 Autoinducer binding domain KU058_19970 PF00196 Bacterial regulatory proteins, luxR family KU058_19980 PF00765 Autoinducer synthase KU058_19985 PF00083 Sugar (and other) transporter KU058_19985 PF07690 Major Facilitator Superfamily KU058_19990 PF00378 Enoyl-CoA hydratase/isomerase KU058_19995 PF00378 Enoyl-CoA hydratase/isomerase KU058_20000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU058_20000 PF02770 Acyl-CoA dehydrogenase, middle domain KU058_20000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU058_20005 PF00501 AMP-binding enzyme KU058_20005 PF13193 AMP-binding enzyme C-terminal domain KU058_20010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU058_20010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU058_20015 PF00171 Aldehyde dehydrogenase family KU058_20025 PF00324 Amino acid permease KU058_20030 PF00324 Amino acid permease KU058_20035 PF01042 Endoribonuclease L-PSP KU058_20040 PF00842 Alanine racemase, C-terminal domain KU058_20040 PF01168 Alanine racemase, N-terminal domain KU058_20045 PF01266 FAD dependent oxidoreductase KU058_20050 PF01037 Lrp/AsnC ligand binding domain KU058_20060 PF07715 TonB-dependent Receptor Plug Domain KU058_20060 PF00593 TonB dependent receptor KU058_20075 PF00849 RNA pseudouridylate synthase KU058_20090 PF00440 Bacterial regulatory proteins, tetR family KU058_20090 PF08361 MAATS-type transcriptional repressor, C-terminal region KU058_20100 PF00109 Beta-ketoacyl synthase, N-terminal domain KU058_20100 PF02801 Beta-ketoacyl synthase, C-terminal domain KU058_20135 PF00694 Aconitase C-terminal domain KU058_20135 PF00330 Aconitase family (aconitate hydratase) KU058_20140 PF00285 Citrate synthase, C-terminal domain KU058_20150 PF00392 Bacterial regulatory proteins, gntR family KU058_20150 PF07729 FCD domain KU058_20160 PF00155 Aminotransferase class I and II KU058_20165 PF09330 D-lactate dehydrogenase, membrane binding KU058_20165 PF01565 FAD binding domain KU058_20170 PF01070 FMN-dependent dehydrogenase KU058_20175 PF07729 FCD domain KU058_20175 PF00392 Bacterial regulatory proteins, gntR family KU058_20180 PF02652 L-lactate permease KU058_20185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU058_20185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU058_20185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU058_20185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU058_20190 PF16363 GDP-mannose 4,6 dehydratase KU058_20195 PF00342 Phosphoglucose isomerase KU058_20200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KU058_20200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KU058_20200 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KU058_20205 PF00483 Nucleotidyl transferase KU058_20210 PF02397 Bacterial sugar transferase KU058_20230 PF07922 Glycosyltransferase family 52 KU058_20235 PF01943 Polysaccharide biosynthesis protein KU058_20240 PF02348 Cytidylyltransferase KU058_20245 PF00483 Nucleotidyl transferase KU058_20255 PF03102 NeuB family KU058_20255 PF08666 SAF domain KU058_20260 PF02350 UDP-N-acetylglucosamine 2-epimerase KU058_20265 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KU058_20270 PF02719 Polysaccharide biosynthesis protein KU058_20275 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KU058_20275 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KU058_20275 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KU058_20280 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KU058_20280 PF10531 SLBB domain KU058_20280 PF02563 Polysaccharide biosynthesis/export protein KU058_20285 PF01451 Low molecular weight phosphotyrosine protein phosphatase KU058_20290 PF02706 Chain length determinant protein KU058_20290 PF13807 G-rich domain on putative tyrosine kinase KU058_20290 PF13614 AAA domain KU058_20295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KU058_20295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU058_20300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KU058_20300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU058_20305 PF03023 Lipid II flippase MurJ KU058_20310 PF01510 N-acetylmuramoyl-L-alanine amidase KU058_20315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KU058_20315 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KU058_20330 PF01138 3' exoribonuclease family, domain 1 KU058_20330 PF03725 3' exoribonuclease family, domain 2 KU058_20335 PF00487 Fatty acid desaturase KU058_20340 PF00175 Oxidoreductase NAD-binding domain KU058_20345 PF00440 Bacterial regulatory proteins, tetR family KU058_20350 PF08360 QacR-like protein, C-terminal region KU058_20350 PF00440 Bacterial regulatory proteins, tetR family KU058_20355 PF01323 DSBA-like thioredoxin domain KU058_20365 PF13419 Haloacid dehalogenase-like hydrolase KU058_20370 PF00106 short chain dehydrogenase KU058_20385 PF00583 Acetyltransferase (GNAT) family KU058_20385 PF00696 Amino acid kinase family KU058_20390 PF09084 NMT1/THI5 like KU058_20395 PF09084 NMT1/THI5 like KU058_20400 PF00296 Luciferase-like monooxygenase KU058_20405 PF00528 Binding-protein-dependent transport system inner membrane component KU058_20410 PF00005 ABC transporter KU058_20415 PF08362 YcdC-like protein, C-terminal region KU058_20415 PF00440 Bacterial regulatory proteins, tetR family KU058_20420 PF01048 Phosphorylase superfamily KU058_20430 PF06574 FAD synthetase KU058_20430 PF01687 Riboflavin kinase KU058_20435 PF06827 Zinc finger found in FPG and IleRS KU058_20435 PF08264 Anticodon-binding domain of tRNA KU058_20435 PF00133 tRNA synthetases class I (I, L, M and V) KU058_20440 PF01252 Signal peptidase (SPase) II KU058_20445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU058_20485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KU058_20490 PF07859 alpha/beta hydrolase fold KU058_20515 PF01025 GrpE KU058_20520 PF00012 Hsp70 protein KU058_20540 PF13406 Transglycosylase SLT domain KU058_20545 PF02222 ATP-grasp domain KU058_20545 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KU058_20550 PF00731 AIR carboxylase KU058_20560 PF01225 Mur ligase family, catalytic domain KU058_20560 PF02875 Mur ligase family, glutamate ligase domain KU058_20560 PF08245 Mur ligase middle domain KU058_20570 PF01569 PAP2 superfamily KU058_20575 PF03741 Integral membrane protein TerC family KU058_20585 PF03738 Glutathionylspermidine synthase preATP-grasp KU058_20590 PF00355 Rieske [2Fe-2S] domain KU058_20595 PF01979 Amidohydrolase family KU058_20600 PF00156 Phosphoribosyl transferase domain KU058_20610 PF13098 Thioredoxin-like domain KU058_20610 PF10411 Disulfide bond isomerase protein N-terminus KU058_20615 PF01545 Cation efflux family KU058_20615 PF16916 Dimerisation domain of Zinc Transporter KU058_20620 PF02583 Metal-sensitive transcriptional repressor KU058_20625 PF10396 GTP-binding protein TrmE N-terminus KU058_20625 PF01926 50S ribosome-binding GTPase KU058_20625 PF12631 MnmE helical domain KU058_20630 PF02096 60Kd inner membrane protein KU058_20630 PF14849 YidC periplasmic domain KU058_20635 PF01809 Putative membrane protein insertion efficiency factor KU058_20640 PF00825 Ribonuclease P KU058_20645 PF00468 Ribosomal protein L34 KU058_20650 PF01051 Initiator Replication protein KU058_20665 PF05973 Phage derived protein Gp49-like (DUF891) KU058_20685 PF07715 TonB-dependent Receptor Plug Domain KU058_20685 PF00593 TonB dependent receptor KU058_20710 PF03389 MobA/MobL family