locus-tag class description KU228_00005 PF00308 Bacterial dnaA protein KU228_00005 PF08299 Bacterial dnaA protein helix-turn-helix KU228_00005 PF11638 DnaA N-terminal domain KU228_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KU228_00010 PF02767 DNA polymerase III beta subunit, central domain KU228_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KU228_00015 PF02463 RecF/RecN/SMC N terminal domain KU228_00020 PF00204 DNA gyrase B KU228_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KU228_00020 PF18053 DNA gyrase B subunit insert domain KU228_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_00020 PF01751 Toprim domain KU228_00030 PF09335 SNARE associated Golgi protein KU228_00035 PF00005 ABC transporter KU228_00035 PF12848 ABC transporter KU228_00055 PF01521 Iron-sulphur cluster biosynthesis KU228_00060 PF00561 alpha/beta hydrolase fold KU228_00065 PF03702 Anhydro-N-acetylmuramic acid kinase KU228_00070 PF00579 tRNA synthetases class I (W and Y) KU228_00110 PF00209 Sodium:neurotransmitter symporter family KU228_00120 PF01189 16S rRNA methyltransferase RsmB/F KU228_00120 PF01029 NusB family KU228_00125 PF02911 Formyl transferase, C-terminal domain KU228_00125 PF00551 Formyl transferase KU228_00130 PF00920 Dehydratase family KU228_00145 PF03466 LysR substrate binding domain KU228_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_00150 PF00860 Permease family KU228_00155 PF00311 Phosphoenolpyruvate carboxylase KU228_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region KU228_00160 PF00440 Bacterial regulatory proteins, tetR family KU228_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU228_00170 PF00873 AcrB/AcrD/AcrF family KU228_00180 PF00684 DnaJ central domain KU228_00180 PF01556 DnaJ C terminal domain KU228_00180 PF00226 DnaJ domain KU228_00190 PF05173 Dihydrodipicolinate reductase, C-terminus KU228_00190 PF01113 Dihydrodipicolinate reductase, N-terminus KU228_00200 PF07690 Major Facilitator Superfamily KU228_00205 PF00248 Aldo/keto reductase family KU228_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_00210 PF03466 LysR substrate binding domain KU228_00225 PF00392 Bacterial regulatory proteins, gntR family KU228_00225 PF00155 Aminotransferase class I and II KU228_00230 PF08240 Alcohol dehydrogenase GroES-like domain KU228_00230 PF00107 Zinc-binding dehydrogenase KU228_00235 PF03352 Methyladenine glycosylase KU228_00250 PF14815 NUDIX domain KU228_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein KU228_00250 PF00633 Helix-hairpin-helix motif KU228_00250 PF10576 Iron-sulfur binding domain of endonuclease III KU228_00265 PF07043 Protein of unknown function (DUF1328) KU228_00270 PF03692 Putative zinc- or iron-chelating domain KU228_00275 PF07995 Glucose / Sorbosone dehydrogenase KU228_00280 PF00004 ATPase family associated with various cellular activities (AAA) KU228_00280 PF16193 AAA C-terminal domain KU228_00280 PF12002 MgsA AAA+ ATPase C terminal KU228_00285 PF01226 Formate/nitrite transporter KU228_00295 PF01259 SAICAR synthetase KU228_00305 PF00701 Dihydrodipicolinate synthetase family KU228_00310 PF00857 Isochorismatase family KU228_00315 PF01758 Sodium Bile acid symporter family KU228_00320 PF01554 MatE KU228_00325 PF04463 Protein of unknown function (DUF523) KU228_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU228_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU228_00345 PF02798 Glutathione S-transferase, N-terminal domain KU228_00345 PF14497 Glutathione S-transferase, C-terminal domain KU228_00355 PF00324 Amino acid permease KU228_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain KU228_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU228_00375 PF00392 Bacterial regulatory proteins, gntR family KU228_00375 PF07702 UTRA domain KU228_00380 PF05962 HutD KU228_00385 PF17392 Urocanase C-terminal domain KU228_00385 PF01175 Urocanase Rossmann-like domain KU228_00385 PF17391 Urocanase N-terminal domain KU228_00390 PF00221 Aromatic amino acid lyase KU228_00395 PF00324 Amino acid permease KU228_00400 PF01979 Amidohydrolase family KU228_00405 PF00491 Arginase family KU228_00420 PF01177 Asp/Glu/Hydantoin racemase KU228_00425 PF01380 SIS domain KU228_00430 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_00430 PF14602 Hexapeptide repeat of succinyl-transferase KU228_00430 PF12804 MobA-like NTP transferase domain KU228_00435 PF04608 Phosphatidylglycerophosphatase A KU228_00440 PF02769 AIR synthase related protein, C-terminal domain KU228_00440 PF00586 AIR synthase related protein, N-terminal domain KU228_00445 PF01029 NusB family KU228_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase KU228_00455 PF00925 GTP cyclohydrolase II KU228_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KU228_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase KU228_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KU228_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KU228_00490 PF00581 Rhodanese-like domain KU228_00495 PF02666 Phosphatidylserine decarboxylase KU228_00500 PF03069 Acetamidase/Formamidase family KU228_00520 PF00989 PAS fold KU228_00520 PF11808 Phosphate regulon sensor protein PhoR KU228_00520 PF00512 His Kinase A (phospho-acceptor) domain KU228_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_00525 PF00072 Response regulator receiver domain KU228_00525 PF00486 Transcriptional regulatory protein, C terminal KU228_00535 PF00106 short chain dehydrogenase KU228_00540 PF01554 MatE KU228_00545 PF00155 Aminotransferase class I and II KU228_00550 PF04286 Protein of unknown function (DUF445) KU228_00565 PF04262 Glutamate-cysteine ligase KU228_00570 PF02600 Disulfide bond formation protein DsbB KU228_00575 PF04717 Type VI secretion system, phage-baseplate injector KU228_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU228_00575 PF13296 Putative type VI secretion system Rhs element Vgr KU228_00580 PF00877 NlpC/P60 family KU228_00580 PF01476 LysM domain KU228_00595 PF05728 Uncharacterised protein family (UPF0227) KU228_00600 PF01751 Toprim domain KU228_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_00600 PF00986 DNA gyrase B subunit, carboxyl terminus KU228_00600 PF00204 DNA gyrase B KU228_00605 PF00106 short chain dehydrogenase KU228_00610 PF04115 Ureidoglycolate lyase KU228_00615 PF03561 Allantoicase repeat KU228_00620 PF01494 FAD binding domain KU228_00630 PF00860 Permease family KU228_00635 PF00576 HIUase/Transthyretin family KU228_00665 PF02683 Cytochrome C biogenesis protein transmembrane region KU228_00665 PF11412 Disulphide bond corrector protein DsbC KU228_00670 PF00990 Diguanylate cyclase, GGDEF domain KU228_00670 PF07694 5TMR of 5TMR-LYT KU228_00675 PF07859 alpha/beta hydrolase fold KU228_00685 PF03960 ArsC family KU228_00690 PF03372 Endonuclease/Exonuclease/phosphatase family KU228_00695 PF00156 Phosphoribosyl transferase domain KU228_00700 PF00593 TonB dependent receptor KU228_00700 PF07715 TonB-dependent Receptor Plug Domain KU228_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KU228_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KU228_00715 PF03033 Glycosyltransferase family 28 N-terminal domain KU228_00715 PF04101 Glycosyltransferase family 28 C-terminal domain KU228_00720 PF08245 Mur ligase middle domain KU228_00720 PF02875 Mur ligase family, glutamate ligase domain KU228_00720 PF01225 Mur ligase family, catalytic domain KU228_00725 PF01820 D-ala D-ala ligase N-terminus KU228_00725 PF07478 D-ala D-ala ligase C-terminus KU228_00730 PF08478 POTRA domain, FtsQ-type KU228_00730 PF03799 Cell division protein FtsQ KU228_00735 PF02491 SHS2 domain inserted in FTSA KU228_00740 PF00091 Tubulin/FtsZ family, GTPase domain KU228_00740 PF12327 FtsZ family, C-terminal domain KU228_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KU228_00755 PF01551 Peptidase family M23 KU228_00760 PF00456 Transketolase, thiamine diphosphate binding domain KU228_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain KU228_00765 PF02817 e3 binding domain KU228_00765 PF00364 Biotin-requiring enzyme KU228_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU228_00775 PF01169 Uncharacterized protein family UPF0016 KU228_00780 PF00593 TonB dependent receptor KU228_00780 PF07715 TonB-dependent Receptor Plug Domain KU228_00785 PF00258 Flavodoxin KU228_00785 PF01613 Flavin reductase like domain KU228_00790 PF03692 Putative zinc- or iron-chelating domain KU228_00795 PF00571 CBS domain KU228_00795 PF00478 IMP dehydrogenase / GMP reductase domain KU228_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU228_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU228_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU228_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU228_00805 PF01243 Pyridoxamine 5'-phosphate oxidase KU228_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KU228_00810 PF17768 RecJ OB domain KU228_00810 PF02272 DHHA1 domain KU228_00810 PF01368 DHH family KU228_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU228_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KU228_00840 PF04452 RNA methyltransferase KU228_00845 PF00924 Mechanosensitive ion channel KU228_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus KU228_00855 PF00501 AMP-binding enzyme KU228_00855 PF13193 AMP-binding enzyme C-terminal domain KU228_00860 PF00857 Isochorismatase family KU228_00865 PF01037 Lrp/AsnC ligand binding domain KU228_00870 PF00872 Transposase, Mutator family KU228_00875 PF00296 Luciferase-like monooxygenase KU228_00880 PF03358 NADPH-dependent FMN reductase KU228_00885 PF00196 Bacterial regulatory proteins, luxR family KU228_00885 PF00072 Response regulator receiver domain KU228_00895 PF00072 Response regulator receiver domain KU228_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_00895 PF00512 His Kinase A (phospho-acceptor) domain KU228_00895 PF00672 HAMP domain KU228_00895 PF01627 Hpt domain KU228_00900 PF04341 Protein of unknown function, DUF485 KU228_00905 PF00474 Sodium:solute symporter family KU228_00915 PF02028 BCCT, betaine/carnitine/choline family transporter KU228_00925 PF00990 Diguanylate cyclase, GGDEF domain KU228_00935 PF00005 ABC transporter KU228_00935 PF17755 UvrA DNA-binding domain KU228_00935 PF17760 UvrA interaction domain KU228_00940 PF16925 Tetracyclin repressor-like, C-terminal domain KU228_00940 PF00440 Bacterial regulatory proteins, tetR family KU228_00945 PF08240 Alcohol dehydrogenase GroES-like domain KU228_00945 PF00107 Zinc-binding dehydrogenase KU228_00955 PF06942 GlpM protein KU228_00960 PF03070 TENA/THI-4/PQQC family KU228_00960 PF08543 Phosphomethylpyrimidine kinase KU228_00960 PF02581 Thiamine monophosphate synthase KU228_00970 PF07690 Major Facilitator Superfamily KU228_00975 PF00436 Single-strand binding protein family KU228_00985 PF03591 AzlC protein KU228_00995 PF00324 Amino acid permease KU228_01000 PF00392 Bacterial regulatory proteins, gntR family KU228_01000 PF00155 Aminotransferase class I and II KU228_01005 PF00202 Aminotransferase class-III KU228_01010 PF00171 Aldehyde dehydrogenase family KU228_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_01020 PF00857 Isochorismatase family KU228_01025 PF02678 Pirin KU228_01025 PF05726 Pirin C-terminal cupin domain KU228_01030 PF01593 Flavin containing amine oxidoreductase KU228_01050 PF07690 Major Facilitator Superfamily KU228_01055 PF03466 LysR substrate binding domain KU228_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_01075 PF00248 Aldo/keto reductase family KU228_01080 PF02311 AraC-like ligand binding domain KU228_01080 PF12833 Helix-turn-helix domain KU228_01110 PF01638 HxlR-like helix-turn-helix KU228_01115 PF02525 Flavodoxin-like fold KU228_01135 PF02705 K+ potassium transporter KU228_01160 PF00230 Major intrinsic protein KU228_01175 PF00977 Histidine biosynthesis protein KU228_01180 PF01636 Phosphotransferase enzyme family KU228_01195 PF03992 Antibiotic biosynthesis monooxygenase KU228_01210 PF00977 Histidine biosynthesis protein KU228_01225 PF00117 Glutamine amidotransferase class-I KU228_01230 PF00475 Imidazoleglycerol-phosphate dehydratase KU228_01250 PF00583 Acetyltransferase (GNAT) family KU228_01255 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KU228_01255 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KU228_01265 PF00512 His Kinase A (phospho-acceptor) domain KU228_01265 PF00672 HAMP domain KU228_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_01270 PF00072 Response regulator receiver domain KU228_01270 PF00486 Transcriptional regulatory protein, C terminal KU228_01275 PF17674 HHH domain KU228_01275 PF00575 S1 RNA binding domain KU228_01275 PF09371 Tex-like protein N-terminal domain KU228_01275 PF16921 Tex protein YqgF-like domain KU228_01280 PF01740 STAS domain KU228_01280 PF00916 Sulfate permease family KU228_01285 PF00106 short chain dehydrogenase KU228_01290 PF01053 Cys/Met metabolism PLP-dependent enzyme KU228_01295 PF12848 ABC transporter KU228_01295 PF00005 ABC transporter KU228_01320 PF04191 Phospholipid methyltransferase KU228_01340 PF00529 HlyD membrane-fusion protein of T1SS KU228_01340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU228_01345 PF00873 AcrB/AcrD/AcrF family KU228_01350 PF01545 Cation efflux family KU228_01380 PF00324 Amino acid permease KU228_01395 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU228_01410 PF01795 MraW methylase family KU228_01420 PF03717 Penicillin-binding Protein dimerisation domain KU228_01420 PF00905 Penicillin binding protein transpeptidase domain KU228_01425 PF01225 Mur ligase family, catalytic domain KU228_01425 PF02875 Mur ligase family, glutamate ligase domain KU228_01425 PF08245 Mur ligase middle domain KU228_01430 PF01225 Mur ligase family, catalytic domain KU228_01430 PF08245 Mur ligase middle domain KU228_01430 PF02875 Mur ligase family, glutamate ligase domain KU228_01435 PF00953 Glycosyl transferase family 4 KU228_01445 PF13847 Methyltransferase domain KU228_01450 PF17092 Penicillin-binding protein OB-like domain KU228_01450 PF00912 Transglycosylase KU228_01450 PF00905 Penicillin binding protein transpeptidase domain KU228_01455 PF11104 Type IV pilus assembly protein PilM; KU228_01460 PF05137 Fimbrial assembly protein (PilN) KU228_01465 PF04350 Pilus assembly protein, PilO KU228_01475 PF00263 Bacterial type II and III secretion system protein KU228_01475 PF11741 AMIN domain KU228_01475 PF07660 Secretin and TonB N terminus short domain KU228_01475 PF03958 Bacterial type II/III secretion system short domain KU228_01480 PF01202 Shikimate kinase KU228_01485 PF01761 3-dehydroquinate synthase KU228_01495 PF00310 Glutamine amidotransferases class-II KU228_01495 PF04898 Glutamate synthase central domain KU228_01495 PF01645 Conserved region in glutamate synthase KU228_01495 PF01493 GXGXG motif KU228_01500 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KU228_01500 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_01510 PF04011 LemA family KU228_01515 PF04536 TPM domain KU228_01535 PF11846 Virulence factor membrane-bound polymerase, C-terminal KU228_01535 PF04932 O-Antigen ligase KU228_01535 PF15864 Protein glycosylation ligase KU228_01540 PF00210 Ferritin-like domain KU228_01545 PF04324 BFD-like [2Fe-2S] binding domain KU228_01550 PF01042 Endoribonuclease L-PSP KU228_01555 PF02824 TGS domain KU228_01555 PF04607 Region found in RelA / SpoT proteins KU228_01555 PF13291 ACT domain KU228_01565 PF01192 RNA polymerase Rpb6 KU228_01570 PF00625 Guanylate kinase KU228_01575 PF02401 LytB protein KU228_01615 PF00886 Ribosomal protein S16 KU228_01620 PF01782 RimM N-terminal domain KU228_01620 PF05239 PRC-barrel domain KU228_01625 PF01746 tRNA (Guanine-1)-methyltransferase KU228_01630 PF01245 Ribosomal protein L19 KU228_01635 PF00561 alpha/beta hydrolase fold KU228_01640 PF03280 Proteobacterial lipase chaperone protein KU228_01645 PF01509 TruB family pseudouridylate synthase (N terminal domain) KU228_01645 PF16198 tRNA pseudouridylate synthase B C-terminal domain KU228_01645 PF09157 Pseudouridine synthase II TruB, C-terminal KU228_01650 PF01925 Sulfite exporter TauE/SafE KU228_01660 PF00892 EamA-like transporter family KU228_01665 PF00892 EamA-like transporter family KU228_01670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU228_01670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU228_01675 PF02913 FAD linked oxidases, C-terminal domain KU228_01675 PF01565 FAD binding domain KU228_01685 PF03992 Antibiotic biosynthesis monooxygenase KU228_01690 PF02525 Flavodoxin-like fold KU228_01700 PF07690 Major Facilitator Superfamily KU228_01705 PF12805 FUSC-like inner membrane protein yccS KU228_01710 PF00080 Copper/zinc superoxide dismutase (SODC) KU228_01715 PF01594 AI-2E family transporter KU228_01720 PF13614 AAA domain KU228_01750 PF00324 Amino acid permease KU228_01755 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KU228_01755 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KU228_01760 PF00202 Aminotransferase class-III KU228_01765 PF04958 Arginine N-succinyltransferase beta subunit KU228_01770 PF00171 Aldehyde dehydrogenase family KU228_01775 PF04996 Succinylarginine dihydrolase KU228_01780 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KU228_01795 PF05922 Peptidase inhibitor I9 KU228_01795 PF00082 Subtilase family KU228_01810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_01810 PF03466 LysR substrate binding domain KU228_01815 PF00892 EamA-like transporter family KU228_01825 PF05746 DALR anticodon binding domain KU228_01825 PF02092 Glycyl-tRNA synthetase beta subunit KU228_01830 PF02091 Glycyl-tRNA synthetase alpha subunit KU228_01855 PF00571 CBS domain KU228_01860 PF04024 PspC domain KU228_01870 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU228_01870 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_01870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_01870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_01880 PF08501 Shikimate dehydrogenase substrate binding domain KU228_01880 PF01488 Shikimate / quinate 5-dehydrogenase KU228_01880 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KU228_01885 PF01218 Coproporphyrinogen III oxidase KU228_01890 PF00925 GTP cyclohydrolase II KU228_01895 PF02779 Transketolase, pyrimidine binding domain KU228_01895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KU228_01895 PF02780 Transketolase, C-terminal domain KU228_01900 PF00459 Inositol monophosphatase family KU228_01905 PF00271 Helicase conserved C-terminal domain KU228_01905 PF12343 Cold shock protein DEAD box A KU228_01905 PF03880 DbpA RNA binding domain KU228_01905 PF00270 DEAD/DEAH box helicase KU228_01915 PF00005 ABC transporter KU228_01920 PF02405 Permease MlaE KU228_01930 PF05494 MlaC protein KU228_01940 PF01544 CorA-like Mg2+ transporter protein KU228_01945 PF03641 Possible lysine decarboxylase KU228_01950 PF00293 NUDIX domain KU228_01955 PF00156 Phosphoribosyl transferase domain KU228_01960 PF00270 DEAD/DEAH box helicase KU228_01960 PF00271 Helicase conserved C-terminal domain KU228_01960 PF17191 RecG wedge domain KU228_01975 PF01553 Acyltransferase KU228_01985 PF00375 Sodium:dicarboxylate symporter family KU228_01995 PF01926 50S ribosome-binding GTPase KU228_02000 PF02082 Transcriptional regulator KU228_02005 PF00042 Globin KU228_02005 PF00970 Oxidoreductase FAD-binding domain KU228_02005 PF00175 Oxidoreductase NAD-binding domain KU228_02010 PF05872 Bacterial protein of unknown function (DUF853) KU228_02015 PF01053 Cys/Met metabolism PLP-dependent enzyme KU228_02020 PF00117 Glutamine amidotransferase class-I KU228_02025 PF00338 Ribosomal protein S10p/S20e KU228_02030 PF00297 Ribosomal protein L3 KU228_02035 PF00573 Ribosomal protein L4/L1 family KU228_02040 PF00276 Ribosomal protein L23 KU228_02045 PF03947 Ribosomal Proteins L2, C-terminal domain KU228_02045 PF00181 Ribosomal Proteins L2, RNA binding domain KU228_02050 PF00203 Ribosomal protein S19 KU228_02055 PF00237 Ribosomal protein L22p/L17e KU228_02060 PF07650 KH domain KU228_02060 PF00189 Ribosomal protein S3, C-terminal domain KU228_02065 PF00252 Ribosomal protein L16p/L10e KU228_02070 PF00831 Ribosomal L29 protein KU228_02075 PF00366 Ribosomal protein S17 KU228_02080 PF00238 Ribosomal protein L14p/L23e KU228_02085 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KU228_02085 PF00467 KOW motif KU228_02090 PF00281 Ribosomal protein L5 KU228_02090 PF00673 ribosomal L5P family C-terminus KU228_02095 PF00253 Ribosomal protein S14p/S29e KU228_02100 PF00410 Ribosomal protein S8 KU228_02105 PF00347 Ribosomal protein L6 KU228_02110 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KU228_02115 PF03719 Ribosomal protein S5, C-terminal domain KU228_02115 PF00333 Ribosomal protein S5, N-terminal domain KU228_02120 PF00327 Ribosomal protein L30p/L7e KU228_02125 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KU228_02130 PF00344 SecY translocase KU228_02135 PF00444 Ribosomal protein L36 KU228_02140 PF00416 Ribosomal protein S13/S18 KU228_02145 PF00411 Ribosomal protein S11 KU228_02150 PF00163 Ribosomal protein S4/S9 N-terminal domain KU228_02150 PF01479 S4 domain KU228_02155 PF01000 RNA polymerase Rpb3/RpoA insert domain KU228_02155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KU228_02155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KU228_02160 PF01196 Ribosomal protein L17 KU228_02165 PF00743 Flavin-binding monooxygenase-like KU228_02170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_02170 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_02170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_02175 PF03937 Flavinator of succinate dehydrogenase KU228_02205 PF09526 Probable metal-binding protein (DUF2387) KU228_02210 PF01432 Peptidase family M3 KU228_02215 PF08206 Ribonuclease B OB domain KU228_02215 PF00773 RNB domain KU228_02215 PF17876 Cold shock domain KU228_02215 PF00575 S1 RNA binding domain KU228_02215 PF08461 Ribonuclease R winged-helix domain KU228_02260 PF01557 Fumarylacetoacetate (FAA) hydrolase family KU228_02265 PF12833 Helix-turn-helix domain KU228_02270 PF00892 EamA-like transporter family KU228_02275 PF03631 Virulence factor BrkB KU228_02280 PF03358 NADPH-dependent FMN reductase KU228_02305 PF02130 Uncharacterized protein family UPF0054 KU228_02310 PF02562 PhoH-like protein KU228_02315 PF01938 TRAM domain KU228_02315 PF04055 Radical SAM superfamily KU228_02315 PF00919 Uncharacterized protein family UPF0004 KU228_02320 PF10145 Phage-related minor tail protein KU228_02320 PF01551 Peptidase family M23 KU228_02320 PF01464 Transglycosylase SLT domain KU228_02330 PF00056 lactate/malate dehydrogenase, NAD binding domain KU228_02330 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KU228_02350 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KU228_02355 PF01066 CDP-alcohol phosphatidyltransferase KU228_02400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_02400 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_02400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_02405 PF17932 Tetracyclin repressor-like, C-terminal domain KU228_02405 PF00440 Bacterial regulatory proteins, tetR family KU228_02420 PF01039 Carboxyl transferase domain KU228_02425 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_02425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_02425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_02435 PF02785 Biotin carboxylase C-terminal domain KU228_02435 PF00364 Biotin-requiring enzyme KU228_02435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU228_02435 PF00289 Biotin carboxylase, N-terminal domain KU228_02445 PF04386 Stringent starvation protein B KU228_02450 PF00043 Glutathione S-transferase, C-terminal domain KU228_02450 PF13417 Glutathione S-transferase, N-terminal domain KU228_02455 PF00380 Ribosomal protein S9/S16 KU228_02460 PF00572 Ribosomal protein L13 KU228_02465 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KU228_02470 PF00398 Ribosomal RNA adenine dimethylase KU228_02475 PF00149 Calcineurin-like phosphoesterase KU228_02495 PF13167 GTP-binding GTPase N-terminal KU228_02495 PF01926 50S ribosome-binding GTPase KU228_02495 PF16360 GTP-binding GTPase Middle Region KU228_02505 PF13091 PLD-like domain KU228_02510 PF10518 TAT (twin-arginine translocation) pathway signal sequence KU228_02510 PF00149 Calcineurin-like phosphoesterase KU228_02515 PF01389 OmpA-like transmembrane domain KU228_02515 PF00691 OmpA family KU228_02520 PF17152 Periplasmic sensor domain KU228_02520 PF00990 Diguanylate cyclase, GGDEF domain KU228_02555 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_02555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU228_02565 PF04273 Putative phosphatase (DUF442) KU228_02565 PF00753 Metallo-beta-lactamase superfamily KU228_02570 PF00561 alpha/beta hydrolase fold KU228_02575 PF00085 Thioredoxin KU228_02580 PF03061 Thioesterase superfamily KU228_02590 PF04461 Protein of unknown function (DUF520) KU228_02600 PF01266 FAD dependent oxidoreductase KU228_02600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KU228_02610 PF03795 YCII-related domain KU228_02615 PF04279 Intracellular septation protein A KU228_02620 PF02811 PHP domain KU228_02625 PF01062 Bestrophin, RFP-TM, chloride channel KU228_02630 PF04002 RadC-like JAB domain KU228_02635 PF02441 Flavoprotein KU228_02635 PF04127 DNA / pantothenate metabolism flavoprotein KU228_02640 PF07549 SecD/SecF GG Motif KU228_02640 PF02355 Protein export membrane protein KU228_02645 PF07549 SecD/SecF GG Motif KU228_02645 PF13721 SecD export protein N-terminal TM region KU228_02645 PF02355 Protein export membrane protein KU228_02650 PF02699 Preprotein translocase subunit KU228_02655 PF01702 Queuine tRNA-ribosyltransferase KU228_02670 PF02547 Queuosine biosynthesis protein KU228_02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_02680 PF07689 KaiB domain KU228_02680 PF00512 His Kinase A (phospho-acceptor) domain KU228_02685 PF03710 Glutamate-ammonia ligase adenylyltransferase KU228_02685 PF08335 GlnD PII-uridylyltransferase KU228_02690 PF01063 Amino-transferase class IV KU228_02705 PF01522 Polysaccharide deacetylase KU228_02710 PF00535 Glycosyl transferase family 2 KU228_02715 PF13439 Glycosyltransferase Family 4 KU228_02715 PF00534 Glycosyl transferases group 1 KU228_02740 PF17101 Stealth protein CR1, conserved region 1 KU228_02740 PF11380 Stealth protein CR2, conserved region 2 KU228_02740 PF17102 Stealth protein CR3, conserved region 3 KU228_02745 PF02938 GAD domain KU228_02745 PF00152 tRNA synthetases class II (D, K and N) KU228_02745 PF01336 OB-fold nucleic acid binding domain KU228_02755 PF07715 TonB-dependent Receptor Plug Domain KU228_02755 PF00593 TonB dependent receptor KU228_02775 PF06146 Phosphate-starvation-inducible E KU228_02780 PF02798 Glutathione S-transferase, N-terminal domain KU228_02780 PF00043 Glutathione S-transferase, C-terminal domain KU228_02785 PF03466 LysR substrate binding domain KU228_02785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_02790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_02790 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU228_02790 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_02790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_02795 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_02795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_02795 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU228_02795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_02805 PF00512 His Kinase A (phospho-acceptor) domain KU228_02805 PF00672 HAMP domain KU228_02810 PF00072 Response regulator receiver domain KU228_02810 PF00486 Transcriptional regulatory protein, C terminal KU228_02815 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KU228_02835 PF01923 Cobalamin adenosyltransferase KU228_02840 PF07715 TonB-dependent Receptor Plug Domain KU228_02840 PF00593 TonB dependent receptor KU228_02845 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KU228_02850 PF00291 Pyridoxal-phosphate dependent enzyme KU228_02875 PF00290 Tryptophan synthase alpha chain KU228_02880 PF01039 Carboxyl transferase domain KU228_02885 PF02875 Mur ligase family, glutamate ligase domain KU228_02885 PF08245 Mur ligase middle domain KU228_02900 PF00753 Metallo-beta-lactamase superfamily KU228_02905 PF00578 AhpC/TSA family KU228_02905 PF10417 C-terminal domain of 1-Cys peroxiredoxin KU228_02910 PF07516 SecA Wing and Scaffold domain KU228_02910 PF01043 SecA preprotein cross-linking domain KU228_02910 PF07517 SecA DEAD-like domain KU228_02910 PF02810 SEC-C motif KU228_02920 PF00083 Sugar (and other) transporter KU228_02920 PF07690 Major Facilitator Superfamily KU228_02925 PF03006 Haemolysin-III related KU228_02950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU228_02950 PF00378 Enoyl-CoA hydratase/isomerase KU228_02950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU228_02955 PF00108 Thiolase, N-terminal domain KU228_02955 PF02803 Thiolase, C-terminal domain KU228_02960 PF02311 AraC-like ligand binding domain KU228_02960 PF12833 Helix-turn-helix domain KU228_02965 PF02515 CoA-transferase family III KU228_02970 PF04966 Carbohydrate-selective porin, OprB family KU228_02975 PF01011 PQQ enzyme repeat KU228_02980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU228_02980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU228_02990 PF00893 Small Multidrug Resistance protein KU228_03000 PF00108 Thiolase, N-terminal domain KU228_03000 PF02803 Thiolase, C-terminal domain KU228_03010 PF00691 OmpA family KU228_03010 PF13505 Outer membrane protein beta-barrel domain KU228_03020 PF01139 tRNA-splicing ligase RtcB KU228_03025 PF00324 Amino acid permease KU228_03030 PF05175 Methyltransferase small domain KU228_03030 PF08468 Methyltransferase small domain N-terminal KU228_03035 PF00860 Permease family KU228_03040 PF00679 Elongation factor G C-terminus KU228_03040 PF00009 Elongation factor Tu GTP binding domain KU228_03040 PF03144 Elongation factor Tu domain 2 KU228_03045 PF01741 Large-conductance mechanosensitive channel, MscL KU228_03060 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KU228_03060 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KU228_03060 PF06827 Zinc finger found in FPG and IleRS KU228_03065 PF02245 Methylpurine-DNA glycosylase (MPG) KU228_03070 PF00593 TonB dependent receptor KU228_03070 PF07715 TonB-dependent Receptor Plug Domain KU228_03085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU228_03100 PF13098 Thioredoxin-like domain KU228_03100 PF10411 Disulfide bond isomerase protein N-terminus KU228_03105 PF01571 Aminomethyltransferase folate-binding domain KU228_03115 PF04343 Protein of unknown function, DUF488 KU228_03120 PF03831 PhnA domain KU228_03120 PF08274 PhnA Zinc-Ribbon KU228_03125 PF07411 Domain of unknown function (DUF1508) KU228_03130 PF03129 Anticodon binding domain KU228_03130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU228_03130 PF04073 Aminoacyl-tRNA editing domain KU228_03135 PF00873 AcrB/AcrD/AcrF family KU228_03150 PF00072 Response regulator receiver domain KU228_03155 PF00072 Response regulator receiver domain KU228_03160 PF01584 CheW-like domain KU228_03165 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KU228_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KU228_03170 PF01584 CheW-like domain KU228_03170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_03170 PF01627 Hpt domain KU228_03170 PF00072 Response regulator receiver domain KU228_03180 PF01546 Peptidase family M20/M25/M40 KU228_03180 PF07687 Peptidase dimerisation domain KU228_03185 PF08085 Entericidin EcnA/B family KU228_03195 PF04304 Protein of unknown function (DUF454) KU228_03200 PF17969 L,D-transpeptidase C-terminal domain KU228_03200 PF03734 L,D-transpeptidase catalytic domain KU228_03240 PF00667 FAD binding domain KU228_03240 PF00175 Oxidoreductase NAD-binding domain KU228_03240 PF00258 Flavodoxin KU228_03250 PF12805 FUSC-like inner membrane protein yccS KU228_03255 PF07690 Major Facilitator Superfamily KU228_03260 PF00881 Nitroreductase family KU228_03275 PF01235 Sodium:alanine symporter family KU228_03280 PF01734 Patatin-like phospholipase KU228_03285 PF00291 Pyridoxal-phosphate dependent enzyme KU228_03285 PF13291 ACT domain KU228_03290 PF05992 SbmA/BacA-like family KU228_03330 PF02934 GatB/GatE catalytic domain KU228_03330 PF02637 GatB domain KU228_03335 PF01425 Amidase KU228_03340 PF02686 Glu-tRNAGln amidotransferase C subunit KU228_03350 PF04085 rod shape-determining protein MreC KU228_03355 PF04093 rod shape-determining protein MreD KU228_03360 PF02545 Maf-like protein KU228_03365 PF10150 Ribonuclease E/G family KU228_03365 PF00575 S1 RNA binding domain KU228_03375 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KU228_03375 PF06974 Protein of unknown function (DUF1298) KU228_03380 PF01507 Phosphoadenosine phosphosulfate reductase family KU228_03395 PF02525 Flavodoxin-like fold KU228_03415 PF02673 Bacitracin resistance protein BacA KU228_03420 PF06719 AraC-type transcriptional regulator N-terminus KU228_03420 PF12833 Helix-turn-helix domain KU228_03425 PF08659 KR domain KU228_03425 PF00550 Phosphopantetheine attachment site KU228_03425 PF14765 Polyketide synthase dehydratase KU228_03425 PF00109 Beta-ketoacyl synthase, N-terminal domain KU228_03425 PF02801 Beta-ketoacyl synthase, C-terminal domain KU228_03425 PF08990 Erythronolide synthase docking KU228_03425 PF00698 Acyl transferase domain KU228_03425 PF08240 Alcohol dehydrogenase GroES-like domain KU228_03425 PF09277 Erythronolide synthase, docking KU228_03425 PF16197 Ketoacyl-synthetase C-terminal extension KU228_03430 PF01965 DJ-1/PfpI family KU228_03440 PF00324 Amino acid permease KU228_03445 PF04303 PrpF protein KU228_03450 PF00348 Polyprenyl synthetase KU228_03455 PF04237 YjbR KU228_03460 PF01145 SPFH domain / Band 7 family KU228_03470 PF01734 Patatin-like phospholipase KU228_03490 PF08019 Phosphoethanolamine transferase EptA/EptB KU228_03490 PF00884 Sulfatase KU228_03495 PF00072 Response regulator receiver domain KU228_03495 PF00486 Transcriptional regulatory protein, C terminal KU228_03500 PF08521 Two-component sensor kinase N-terminal KU228_03500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_03500 PF00512 His Kinase A (phospho-acceptor) domain KU228_03510 PF00909 Ammonium Transporter Family KU228_03515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_03515 PF03466 LysR substrate binding domain KU228_03535 PF08264 Anticodon-binding domain of tRNA KU228_03535 PF00133 tRNA synthetases class I (I, L, M and V) KU228_03535 PF10458 Valyl tRNA synthetase tRNA binding arm KU228_03555 PF01906 Putative heavy-metal-binding KU228_03560 PF01906 Putative heavy-metal-binding KU228_03565 PF02321 Outer membrane efflux protein KU228_03570 PF00873 AcrB/AcrD/AcrF family KU228_03575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU228_03575 PF00529 HlyD membrane-fusion protein of T1SS KU228_03580 PF01569 PAP2 superfamily KU228_03590 PF00348 Polyprenyl synthetase KU228_03600 PF00829 Ribosomal prokaryotic L21 protein KU228_03605 PF01016 Ribosomal L27 protein KU228_03610 PF03548 Outer membrane lipoprotein carrier protein LolA KU228_03620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU228_03620 PF02403 Seryl-tRNA synthetase N-terminal domain KU228_03625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KU228_03625 PF14824 Sirohaem biosynthesis protein central KU228_03625 PF10414 Sirohaem synthase dimerisation region KU228_03630 PF00588 SpoU rRNA Methylase family KU228_03635 PF01638 HxlR-like helix-turn-helix KU228_03640 PF03358 NADPH-dependent FMN reductase KU228_03645 PF13520 Amino acid permease KU228_03650 PF00465 Iron-containing alcohol dehydrogenase KU228_03660 PF03099 Biotin/lipoate A/B protein ligase family KU228_03665 PF04359 Protein of unknown function (DUF493) KU228_03670 PF00140 Sigma-70 factor, region 1.2 KU228_03670 PF04545 Sigma-70, region 4 KU228_03670 PF04542 Sigma-70 region 2 KU228_03670 PF04539 Sigma-70 region 3 KU228_03670 PF03979 Sigma-70 factor, region 1.1 KU228_03670 PF04546 Sigma-70, non-essential region KU228_03690 PF00581 Rhodanese-like domain KU228_03690 PF17773 UPF0176 acylphosphatase like domain KU228_03700 PF00285 Citrate synthase, C-terminal domain KU228_03705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KU228_03710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KU228_03715 PF00890 FAD binding domain KU228_03715 PF02910 Fumarate reductase flavoprotein C-term KU228_03720 PF13085 2Fe-2S iron-sulfur cluster binding domain KU228_03735 PF02779 Transketolase, pyrimidine binding domain KU228_03735 PF16870 2-oxoglutarate dehydrogenase C-terminal KU228_03735 PF16078 2-oxoglutarate dehydrogenase N-terminus KU228_03735 PF00676 Dehydrogenase E1 component KU228_03740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU228_03740 PF00364 Biotin-requiring enzyme KU228_03740 PF02817 e3 binding domain KU228_03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_03745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU228_03750 PF08442 ATP-grasp domain KU228_03750 PF00549 CoA-ligase KU228_03755 PF02629 CoA binding domain KU228_03755 PF00549 CoA-ligase KU228_03760 PF00579 tRNA synthetases class I (W and Y) KU228_03765 PF05661 Protein of unknown function (DUF808) KU228_03770 PF04228 Putative neutral zinc metallopeptidase KU228_03775 PF00999 Sodium/hydrogen exchanger family KU228_03810 PF09587 Bacterial capsule synthesis protein PGA_cap KU228_03820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU228_03825 PF00582 Universal stress protein family KU228_03830 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_03835 PF01272 Transcription elongation factor, GreA/GreB, C-term KU228_03835 PF03449 Transcription elongation factor, N-terminal KU228_03840 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KU228_03840 PF02142 MGS-like domain KU228_03840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU228_03845 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KU228_03845 PF00117 Glutamine amidotransferase class-I KU228_03860 PF01985 CRS1 / YhbY (CRM) domain KU228_03865 PF01728 FtsJ-like methyltransferase KU228_03870 PF00004 ATPase family associated with various cellular activities (AAA) KU228_03870 PF17862 AAA+ lid domain KU228_03870 PF06480 FtsH Extracellular KU228_03870 PF01434 Peptidase family M41 KU228_03875 PF00809 Pterin binding enzyme KU228_03895 PF16655 PhoD-like phosphatase, N-terminal domain KU228_03895 PF09423 PhoD-like phosphatase KU228_03910 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KU228_03910 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KU228_03925 PF00083 Sugar (and other) transporter KU228_03930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KU228_03930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KU228_03935 PF01266 FAD dependent oxidoreductase KU228_03935 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KU228_03940 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KU228_03940 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KU228_03945 PF00781 Diacylglycerol kinase catalytic domain KU228_03950 PF00149 Calcineurin-like phosphoesterase KU228_03960 PF00166 Chaperonin 10 Kd subunit KU228_03965 PF00118 TCP-1/cpn60 chaperonin family KU228_03970 PF01219 Prokaryotic diacylglycerol kinase KU228_03980 PF03009 Glycerophosphoryl diester phosphodiesterase family KU228_03985 PF00873 AcrB/AcrD/AcrF family KU228_03995 PF01435 Peptidase family M48 KU228_04000 PF01464 Transglycosylase SLT domain KU228_04005 PF01171 PP-loop family KU228_04015 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU228_04015 PF01464 Transglycosylase SLT domain KU228_04020 PF01272 Transcription elongation factor, GreA/GreB, C-term KU228_04020 PF03449 Transcription elongation factor, N-terminal KU228_04035 PF00550 Phosphopantetheine attachment site KU228_04035 PF00668 Condensation domain KU228_04035 PF00975 Thioesterase domain KU228_04035 PF13193 AMP-binding enzyme C-terminal domain KU228_04035 PF00501 AMP-binding enzyme KU228_04060 PF00881 Nitroreductase family KU228_04075 PF02595 Glycerate kinase family KU228_04080 PF00384 Molybdopterin oxidoreductase KU228_04085 PF02634 FdhD/NarQ family KU228_04090 PF06803 Protein of unknown function (DUF1232) KU228_04095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU228_04095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU228_04095 PF11890 Domain of unknown function (DUF3410) KU228_04100 PF00152 tRNA synthetases class II (D, K and N) KU228_04110 PF18073 Rubredoxin metal binding domain KU228_04115 PF00324 Amino acid permease KU228_04125 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KU228_04125 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KU228_04130 PF01678 Diaminopimelate epimerase KU228_04135 PF01810 LysE type translocator KU228_04140 PF02899 Phage integrase, N-terminal SAM-like domain KU228_04140 PF00589 Phage integrase family KU228_04145 PF01012 Electron transfer flavoprotein domain KU228_04150 PF01012 Electron transfer flavoprotein domain KU228_04150 PF00766 Electron transfer flavoprotein FAD-binding domain KU228_04155 PF03989 DNA gyrase C-terminal domain, beta-propeller KU228_04155 PF00521 DNA gyrase/topoisomerase IV, subunit A KU228_04170 PF00535 Glycosyl transferase family 2 KU228_04190 PF13533 Biotin-lipoyl like KU228_04200 PF00266 Aminotransferase class-V KU228_04215 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KU228_04225 PF12704 MacB-like periplasmic core domain KU228_04225 PF02687 FtsX-like permease family KU228_04230 PF00005 ABC transporter KU228_04235 PF03772 Competence protein KU228_04235 PF13567 Domain of unknown function (DUF4131) KU228_04235 PF00753 Metallo-beta-lactamase superfamily KU228_04245 PF06965 Na+/H+ antiporter 1 KU228_04245 PF01343 Peptidase family S49 KU228_04250 PF12697 Alpha/beta hydrolase family KU228_04255 PF00551 Formyl transferase KU228_04260 PF00586 AIR synthase related protein, N-terminal domain KU228_04260 PF02769 AIR synthase related protein, C-terminal domain KU228_04265 PF01594 AI-2E family transporter KU228_04270 PF08299 Bacterial dnaA protein helix-turn-helix KU228_04270 PF00308 Bacterial dnaA protein KU228_04270 PF11638 DnaA N-terminal domain KU228_04300 PF00588 SpoU rRNA Methylase family KU228_04300 PF08032 RNA 2'-O ribose methyltransferase substrate binding KU228_04305 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KU228_04315 PF00691 OmpA family KU228_04320 PF07676 WD40-like Beta Propeller Repeat KU228_04320 PF04052 TolB amino-terminal domain KU228_04330 PF02472 Biopolymer transport protein ExbD/TolR KU228_04335 PF01618 MotA/TolQ/ExbB proton channel family KU228_04340 PF03061 Thioesterase superfamily KU228_04345 PF07687 Peptidase dimerisation domain KU228_04345 PF01546 Peptidase family M20/M25/M40 KU228_04350 PF05496 Holliday junction DNA helicase RuvB P-loop domain KU228_04350 PF05491 RuvB C-terminal winged helix domain KU228_04350 PF17864 RuvB AAA lid domain KU228_04355 PF01330 RuvA N terminal domain KU228_04355 PF07499 RuvA, C-terminal domain KU228_04360 PF01966 HD domain KU228_04365 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KU228_04365 PF02769 AIR synthase related protein, C-terminal domain KU228_04365 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KU228_04370 PF07690 Major Facilitator Superfamily KU228_04375 PF01784 NIF3 (NGG1p interacting factor 3) KU228_04380 PF00378 Enoyl-CoA hydratase/isomerase KU228_04385 PF00293 NUDIX domain KU228_04385 PF01467 Cytidylyltransferase-like KU228_04395 PF00578 AhpC/TSA family KU228_04410 PF06508 Queuosine biosynthesis protein QueC KU228_04420 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KU228_04420 PF14602 Hexapeptide repeat of succinyl-transferase KU228_04420 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_04430 PF03466 LysR substrate binding domain KU228_04430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_04435 PF12857 TOBE-like domain KU228_04435 PF00005 ABC transporter KU228_04440 PF00528 Binding-protein-dependent transport system inner membrane component KU228_04445 PF00528 Binding-protein-dependent transport system inner membrane component KU228_04460 PF01063 Amino-transferase class IV KU228_04465 PF02618 YceG-like family KU228_04470 PF02223 Thymidylate kinase KU228_04480 PF00890 FAD binding domain KU228_04480 PF02910 Fumarate reductase flavoprotein C-term KU228_04485 PF13180 PDZ domain KU228_04495 PF00679 Elongation factor G C-terminus KU228_04495 PF00009 Elongation factor Tu GTP binding domain KU228_04495 PF03144 Elongation factor Tu domain 2 KU228_04495 PF06421 GTP-binding protein LepA C-terminus KU228_04500 PF10502 Signal peptidase, peptidase S26 KU228_04510 PF14622 Ribonuclease-III-like KU228_04510 PF00035 Double-stranded RNA binding motif KU228_04515 PF01926 50S ribosome-binding GTPase KU228_04515 PF07650 KH domain KU228_04525 PF02565 Recombination protein O C terminal KU228_04525 PF11967 Recombination protein O N terminal KU228_04530 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KU228_04535 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KU228_04540 PF00106 short chain dehydrogenase KU228_04570 PF00155 Aminotransferase class I and II KU228_04580 PF00990 Diguanylate cyclase, GGDEF domain KU228_04580 PF17151 Periplasmic sensor domain KU228_04590 PF00271 Helicase conserved C-terminal domain KU228_04590 PF04851 Type III restriction enzyme, res subunit KU228_04590 PF02151 UvrB/uvrC motif KU228_04590 PF12344 Ultra-violet resistance protein B KU228_04590 PF17757 UvrB interaction domain KU228_04600 PF00892 EamA-like transporter family KU228_04605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KU228_04605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KU228_04620 PF01926 50S ribosome-binding GTPase KU228_04620 PF01018 GTP1/OBG KU228_04625 PF00696 Amino acid kinase family KU228_04625 PF01472 PUA domain KU228_04635 PF07759 Protein of unknown function (DUF1615) KU228_04640 PF01207 Dihydrouridine synthase (Dus) KU228_04645 PF03060 Nitronate monooxygenase KU228_04660 PF02350 UDP-N-acetylglucosamine 2-epimerase KU228_04690 PF00875 DNA photolyase KU228_04690 PF03441 FAD binding domain of DNA photolyase KU228_04695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU228_04700 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_04705 PF07943 Penicillin-binding protein 5, C-terminal domain KU228_04705 PF00768 D-alanyl-D-alanine carboxypeptidase KU228_04715 PF03971 Monomeric isocitrate dehydrogenase KU228_04720 PF00849 RNA pseudouridylate synthase KU228_04725 PF00180 Isocitrate/isopropylmalate dehydrogenase KU228_04745 PF06779 Uncharacterised MFS-type transporter YbfB KU228_04750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_04750 PF03466 LysR substrate binding domain KU228_04755 PF00375 Sodium:dicarboxylate symporter family KU228_04760 PF02567 Phenazine biosynthesis-like protein KU228_04765 PF00675 Insulinase (Peptidase family M16) KU228_04765 PF05193 Peptidase M16 inactive domain KU228_04790 PF02581 Thiamine monophosphate synthase KU228_04795 PF00202 Aminotransferase class-III KU228_04805 PF00849 RNA pseudouridylate synthase KU228_04810 PF12137 RNA polymerase recycling family C-terminal KU228_04810 PF18337 RapA N-terminal Tudor like domain KU228_04810 PF00176 SNF2 family N-terminal domain KU228_04810 PF00271 Helicase conserved C-terminal domain KU228_04810 PF18339 RapA N-terminal Tudor like domain 1 KU228_04820 PF00440 Bacterial regulatory proteins, tetR family KU228_04825 PF00175 Oxidoreductase NAD-binding domain KU228_04825 PF00111 2Fe-2S iron-sulfur cluster binding domain KU228_04825 PF00970 Oxidoreductase FAD-binding domain KU228_04830 PF00487 Fatty acid desaturase KU228_04840 PF17754 MftR C-terminal domain KU228_04840 PF00440 Bacterial regulatory proteins, tetR family KU228_04850 PF00202 Aminotransferase class-III KU228_04855 PF00282 Pyridoxal-dependent decarboxylase conserved domain KU228_04860 PF00171 Aldehyde dehydrogenase family KU228_04865 PF01037 Lrp/AsnC ligand binding domain KU228_04870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU228_04870 PF00205 Thiamine pyrophosphate enzyme, central domain KU228_04870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU228_04875 PF00324 Amino acid permease KU228_04880 PF12849 PBP superfamily domain KU228_04885 PF00528 Binding-protein-dependent transport system inner membrane component KU228_04890 PF00528 Binding-protein-dependent transport system inner membrane component KU228_04895 PF00005 ABC transporter KU228_04900 PF01343 Peptidase family S49 KU228_04900 PF08496 Peptidase family S49 N-terminal KU228_04910 PF00872 Transposase, Mutator family KU228_04920 PF08328 Adenylosuccinate lyase C-terminal KU228_04920 PF00206 Lyase KU228_04925 PF04356 Protein of unknown function (DUF489) KU228_04935 PF13344 Haloacid dehalogenase-like hydrolase KU228_04935 PF00293 NUDIX domain KU228_04940 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_04945 PF07943 Penicillin-binding protein 5, C-terminal domain KU228_04945 PF00768 D-alanyl-D-alanine carboxypeptidase KU228_04960 PF01975 Survival protein SurE KU228_04965 PF01476 LysM domain KU228_04965 PF01551 Peptidase family M23 KU228_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_04970 PF03466 LysR substrate binding domain KU228_04975 PF13654 AAA domain KU228_04975 PF05362 Lon protease (S16) C-terminal proteolytic domain KU228_04980 PF07690 Major Facilitator Superfamily KU228_04985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU228_04990 PF13593 SBF-like CPA transporter family (DUF4137) KU228_04995 PF01197 Ribosomal protein L31 KU228_05010 PF04055 Radical SAM superfamily KU228_05015 PF01132 Elongation factor P (EF-P) OB domain KU228_05015 PF08207 Elongation factor P (EF-P) KOW-like domain KU228_05015 PF09285 Elongation factor P, C-terminal KU228_05020 PF02554 Carbon starvation protein CstA KU228_05020 PF13722 5TM C-terminal transporter carbon starvation CstA KU228_05025 PF04328 Selenoprotein, putative KU228_05055 PF13556 PucR C-terminal helix-turn-helix domain KU228_05055 PF17853 GGDEF-like domain KU228_05055 PF06018 CodY GAF-like domain KU228_05070 PF00171 Aldehyde dehydrogenase family KU228_05075 PF00324 Amino acid permease KU228_05080 PF03466 LysR substrate binding domain KU228_05080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_05085 PF02028 BCCT, betaine/carnitine/choline family transporter KU228_05090 PF02028 BCCT, betaine/carnitine/choline family transporter KU228_05095 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU228_05095 PF00355 Rieske [2Fe-2S] domain KU228_05100 PF00171 Aldehyde dehydrogenase family KU228_05105 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_05105 PF18113 Rubredoxin binding C-terminal domain KU228_05110 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KU228_05110 PF01266 FAD dependent oxidoreductase KU228_05130 PF00892 EamA-like transporter family KU228_05140 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system KU228_05145 PF00083 Sugar (and other) transporter KU228_05150 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KU228_05150 PF13378 Enolase C-terminal domain-like KU228_05155 PF00698 Acyl transferase domain KU228_05155 PF08240 Alcohol dehydrogenase GroES-like domain KU228_05155 PF00550 Phosphopantetheine attachment site KU228_05155 PF08659 KR domain KU228_05155 PF02801 Beta-ketoacyl synthase, C-terminal domain KU228_05155 PF16197 Ketoacyl-synthetase C-terminal extension KU228_05155 PF09277 Erythronolide synthase, docking KU228_05155 PF08990 Erythronolide synthase docking KU228_05155 PF14765 Polyketide synthase dehydratase KU228_05155 PF00109 Beta-ketoacyl synthase, N-terminal domain KU228_05160 PF00440 Bacterial regulatory proteins, tetR family KU228_05180 PF02678 Pirin KU228_05180 PF17954 Quercetinase C-terminal cupin domain KU228_05190 PF13309 HTH domain KU228_05190 PF08348 YheO-like PAS domain KU228_05200 PF00501 AMP-binding enzyme KU228_05200 PF13193 AMP-binding enzyme C-terminal domain KU228_05200 PF00668 Condensation domain KU228_05200 PF00550 Phosphopantetheine attachment site KU228_05205 PF00501 AMP-binding enzyme KU228_05205 PF13193 AMP-binding enzyme C-terminal domain KU228_05205 PF00975 Thioesterase domain KU228_05205 PF00550 Phosphopantetheine attachment site KU228_05205 PF00668 Condensation domain KU228_05210 PF01032 FecCD transport family KU228_05215 PF01032 FecCD transport family KU228_05220 PF00005 ABC transporter KU228_05225 PF01497 Periplasmic binding protein KU228_05230 PF00593 TonB dependent receptor KU228_05230 PF07715 TonB-dependent Receptor Plug Domain KU228_05235 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KU228_05240 PF00550 Phosphopantetheine attachment site KU228_05240 PF00668 Condensation domain KU228_05240 PF00501 AMP-binding enzyme KU228_05245 PF13193 AMP-binding enzyme C-terminal domain KU228_05245 PF00501 AMP-binding enzyme KU228_05250 PF00857 Isochorismatase family KU228_05250 PF00550 Phosphopantetheine attachment site KU228_05255 PF00282 Pyridoxal-dependent decarboxylase conserved domain KU228_05265 PF00005 ABC transporter KU228_05270 PF00005 ABC transporter KU228_05275 PF00975 Thioesterase domain KU228_05285 PF00425 chorismate binding enzyme KU228_05295 PF01208 Uroporphyrinogen decarboxylase (URO-D) KU228_05300 PF05675 Protein of unknown function (DUF817) KU228_05315 PF00144 Beta-lactamase KU228_05325 PF01227 GTP cyclohydrolase I KU228_05330 PF01799 [2Fe-2S] binding domain KU228_05330 PF00111 2Fe-2S iron-sulfur cluster binding domain KU228_05335 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KU228_05335 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KU228_05350 PF00218 Indole-3-glycerol phosphate synthase KU228_05355 PF02885 Glycosyl transferase family, helical bundle domain KU228_05355 PF00591 Glycosyl transferase family, a/b domain KU228_05360 PF07715 TonB-dependent Receptor Plug Domain KU228_05360 PF00593 TonB dependent receptor KU228_05365 PF11838 ERAP1-like C-terminal domain KU228_05365 PF01433 Peptidase family M1 domain KU228_05370 PF00117 Glutamine amidotransferase class-I KU228_05380 PF00854 POT family KU228_05385 PF00120 Glutamine synthetase, catalytic domain KU228_05385 PF03951 Glutamine synthetase, beta-Grasp domain KU228_05390 PF04345 Chorismate lyase KU228_05395 PF01040 UbiA prenyltransferase family KU228_05430 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KU228_05430 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KU228_05435 PF01784 NIF3 (NGG1p interacting factor 3) KU228_05440 PF13180 PDZ domain KU228_05445 PF01743 Poly A polymerase head domain KU228_05445 PF12627 Probable RNA and SrmB- binding site of polymerase A KU228_05450 PF03949 Malic enzyme, NAD binding domain KU228_05450 PF00390 Malic enzyme, N-terminal domain KU228_05450 PF01515 Phosphate acetyl/butaryl transferase KU228_05455 PF00563 EAL domain KU228_05455 PF00990 Diguanylate cyclase, GGDEF domain KU228_05455 PF03707 Bacterial signalling protein N terminal repeat KU228_05460 PF04452 RNA methyltransferase KU228_05465 PF02219 Methylenetetrahydrofolate reductase KU228_05470 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KU228_05470 PF05221 S-adenosyl-L-homocysteine hydrolase KU228_05485 PF09317 Domain of unknown function (DUF1974) KU228_05485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_05485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_05490 PF04055 Radical SAM superfamily KU228_05495 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_05495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU228_05505 PF07690 Major Facilitator Superfamily KU228_05515 PF00557 Metallopeptidase family M24 KU228_05520 PF00318 Ribosomal protein S2 KU228_05525 PF00889 Elongation factor TS KU228_05535 PF12833 Helix-turn-helix domain KU228_05555 PF03330 Lytic transglycolase KU228_05555 PF05036 Sporulation related domain KU228_05560 PF13406 Transglycosylase SLT domain KU228_05565 PF01098 Cell cycle protein KU228_05575 PF14489 QueF-like protein KU228_05575 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KU228_05580 PF01061 ABC-2 type transporter KU228_05585 PF00005 ABC transporter KU228_05615 PF00464 Serine hydroxymethyltransferase KU228_05620 PF02321 Outer membrane efflux protein KU228_05625 PF00873 AcrB/AcrD/AcrF family KU228_05630 PF13533 Biotin-lipoyl like KU228_05635 PF03466 LysR substrate binding domain KU228_05635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_05640 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU228_05645 PF00528 Binding-protein-dependent transport system inner membrane component KU228_05650 PF00528 Binding-protein-dependent transport system inner membrane component KU228_05655 PF00005 ABC transporter KU228_05660 PF00893 Small Multidrug Resistance protein KU228_05665 PF00037 4Fe-4S binding domain KU228_05670 PF01136 Peptidase family U32 KU228_05670 PF16325 Peptidase family U32 C-terminal domain KU228_05675 PF00392 Bacterial regulatory proteins, gntR family KU228_05675 PF00155 Aminotransferase class I and II KU228_05680 PF02567 Phenazine biosynthesis-like protein KU228_05685 PF00970 Oxidoreductase FAD-binding domain KU228_05685 PF00175 Oxidoreductase NAD-binding domain KU228_05690 PF18389 TrmO C-terminal domain KU228_05690 PF01980 tRNA-methyltransferase O KU228_05700 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KU228_05700 PF00437 Type II/IV secretion system protein KU228_05710 PF00486 Transcriptional regulatory protein, C terminal KU228_05710 PF00072 Response regulator receiver domain KU228_05715 PF00512 His Kinase A (phospho-acceptor) domain KU228_05715 PF08521 Two-component sensor kinase N-terminal KU228_05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_05725 PF00293 NUDIX domain KU228_05735 PF14814 Bifunctional transglycosylase second domain KU228_05735 PF00905 Penicillin binding protein transpeptidase domain KU228_05735 PF00912 Transglycosylase KU228_05740 PF01513 ATP-NAD kinase KU228_05745 PF07023 Protein of unknown function (DUF1315) KU228_05750 PF02885 Glycosyl transferase family, helical bundle domain KU228_05750 PF00591 Glycosyl transferase family, a/b domain KU228_05755 PF00375 Sodium:dicarboxylate symporter family KU228_05760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_05760 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_05760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_05765 PF00756 Putative esterase KU228_05770 PF01842 ACT domain KU228_05770 PF00800 Prephenate dehydratase KU228_05770 PF01817 Chorismate mutase type II KU228_05775 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KU228_05785 PF01546 Peptidase family M20/M25/M40 KU228_05785 PF07687 Peptidase dimerisation domain KU228_05790 PF12706 Beta-lactamase superfamily domain KU228_05800 PF03883 Peroxide stress protein YaaA KU228_05810 PF05690 Thiazole biosynthesis protein ThiG KU228_05820 PF04241 Protein of unknown function (DUF423) KU228_05825 PF04545 Sigma-70, region 4 KU228_05825 PF00140 Sigma-70 factor, region 1.2 KU228_05825 PF04542 Sigma-70 region 2 KU228_05835 PF00313 'Cold-shock' DNA-binding domain KU228_05840 PF00270 DEAD/DEAH box helicase KU228_05840 PF00271 Helicase conserved C-terminal domain KU228_05850 PF00881 Nitroreductase family KU228_05855 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KU228_05855 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KU228_05865 PF00589 Phage integrase family KU228_06190 PF01180 Dihydroorotate dehydrogenase KU228_06195 PF02674 Colicin V production protein KU228_06200 PF00156 Phosphoribosyl transferase domain KU228_06215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU228_06215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU228_06220 PF01435 Peptidase family M48 KU228_06225 PF09424 Yqey-like protein KU228_06230 PF01165 Ribosomal protein S21 KU228_06235 PF00814 Glycoprotease family KU228_06255 PF00069 Protein kinase domain KU228_06280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_06280 PF03466 LysR substrate binding domain KU228_06285 PF00202 Aminotransferase class-III KU228_06290 PF00171 Aldehyde dehydrogenase family KU228_06295 PF00324 Amino acid permease KU228_06325 PF04076 Bacterial OB fold (BOF) protein KU228_06340 PF13610 DDE domain KU228_06355 PF00375 Sodium:dicarboxylate symporter family KU228_06365 PF16123 Hydroxyacylglutathione hydrolase C-terminus KU228_06365 PF00753 Metallo-beta-lactamase superfamily KU228_06370 PF00528 Binding-protein-dependent transport system inner membrane component KU228_06375 PF09383 NIL domain KU228_06375 PF00005 ABC transporter KU228_06380 PF03180 NLPA lipoprotein KU228_06385 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KU228_06385 PF02843 Phosphoribosylglycinamide synthetase, C domain KU228_06385 PF02844 Phosphoribosylglycinamide synthetase, N domain KU228_06390 PF01808 AICARFT/IMPCHase bienzyme KU228_06390 PF02142 MGS-like domain KU228_06395 PF02954 Bacterial regulatory protein, Fis family KU228_06415 PF01134 Glucose inhibited division protein A KU228_06415 PF13932 GidA associated domain KU228_06425 PF14403 Circularly permuted ATP-grasp type 2 KU228_06435 PF08379 Bacterial transglutaminase-like N-terminal region KU228_06435 PF01841 Transglutaminase-like superfamily KU228_06445 PF01168 Alanine racemase, N-terminal domain KU228_06445 PF00842 Alanine racemase, C-terminal domain KU228_06450 PF00772 DnaB-like helicase N terminal domain KU228_06450 PF03796 DnaB-like helicase C terminal domain KU228_06455 PF01281 Ribosomal protein L9, N-terminal domain KU228_06455 PF03948 Ribosomal protein L9, C-terminal domain KU228_06460 PF01084 Ribosomal protein S18 KU228_06465 PF01250 Ribosomal protein S6 KU228_06470 PF01040 UbiA prenyltransferase family KU228_06475 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KU228_06480 PF00510 Cytochrome c oxidase subunit III KU228_06485 PF00115 Cytochrome C and Quinol oxidase polypeptide I KU228_06490 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KU228_06490 PF06481 COX Aromatic Rich Motif KU228_06500 PF00391 PEP-utilising enzyme, mobile domain KU228_06500 PF02896 PEP-utilising enzyme, TIM barrel domain KU228_06500 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KU228_06505 PF03618 Kinase/pyrophosphorylase KU228_06515 PF14883 Hypothetical glycosyl hydrolase family 13 KU228_06515 PF01522 Polysaccharide deacetylase KU228_06520 PF00535 Glycosyl transferase family 2 KU228_06525 PF13994 PgaD-like protein KU228_06535 PF00296 Luciferase-like monooxygenase KU228_06550 PF03466 LysR substrate binding domain KU228_06550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_06560 PF00472 RF-1 domain KU228_06560 PF03462 PCRF domain KU228_06565 PF17827 PrmC N-terminal domain KU228_06565 PF13847 Methyltransferase domain KU228_06570 PF00528 Binding-protein-dependent transport system inner membrane component KU228_06575 PF09084 NMT1/THI5 like KU228_06580 PF12833 Helix-turn-helix domain KU228_06585 PF00106 short chain dehydrogenase KU228_06590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_06590 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_06590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_06595 PF00501 AMP-binding enzyme KU228_06595 PF13193 AMP-binding enzyme C-terminal domain KU228_06600 PF01613 Flavin reductase like domain KU228_06605 PF00899 ThiF family KU228_06610 PF03109 ABC1 family KU228_06625 PF03814 Potassium-transporting ATPase A subunit KU228_06635 PF02669 K+-transporting ATPase, c chain KU228_06640 PF13493 Domain of unknown function (DUF4118) KU228_06640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_06640 PF00512 His Kinase A (phospho-acceptor) domain KU228_06640 PF02702 Osmosensitive K+ channel His kinase sensor domain KU228_06645 PF00072 Response regulator receiver domain KU228_06645 PF00486 Transcriptional regulatory protein, C terminal KU228_06650 PF00120 Glutamine synthetase, catalytic domain KU228_06660 PF03232 Ubiquinone biosynthesis protein COQ7 KU228_06665 PF07690 Major Facilitator Superfamily KU228_06670 PF17243 POTRA domain TamA domain 1 KU228_06670 PF01103 Surface antigen KU228_06670 PF07244 Surface antigen variable number repeat KU228_06685 PF00330 Aconitase family (aconitate hydratase) KU228_06685 PF06434 Aconitate hydratase 2 N-terminus KU228_06685 PF11791 Aconitate B N-terminal domain KU228_06695 PF00520 Ion transport protein KU228_06695 PF00027 Cyclic nucleotide-binding domain KU228_06700 PF07690 Major Facilitator Superfamily KU228_06715 PF03466 LysR substrate binding domain KU228_06715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_06720 PF04284 Protein of unknown function (DUF441) KU228_06730 PF01479 S4 domain KU228_06730 PF00849 RNA pseudouridylate synthase KU228_06745 PF01479 S4 domain KU228_06745 PF00849 RNA pseudouridylate synthase KU228_06750 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KU228_06755 PF08676 MutL C terminal dimerisation domain KU228_06755 PF01119 DNA mismatch repair protein, C-terminal domain KU228_06765 PF17209 Hfq protein KU228_06775 PF00881 Nitroreductase family KU228_06785 PF00149 Calcineurin-like phosphoesterase KU228_06790 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KU228_06795 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU228_06795 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KU228_06800 PF00117 Glutamine amidotransferase class-I KU228_06800 PF00958 GMP synthase C terminal domain KU228_06800 PF02540 NAD synthase KU228_06805 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KU228_06810 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KU228_06815 PF13520 Amino acid permease KU228_06820 PF00171 Aldehyde dehydrogenase family KU228_06835 PF00465 Iron-containing alcohol dehydrogenase KU228_06840 PF05970 PIF1-like helicase KU228_06840 PF14493 Helix-turn-helix domain KU228_06850 PF06445 GyrI-like small molecule binding domain KU228_06855 PF02110 Hydroxyethylthiazole kinase family KU228_06870 PF11940 Domain of unknown function (DUF3458) Ig-like fold KU228_06870 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KU228_06870 PF01433 Peptidase family M1 domain KU228_06900 PF01817 Chorismate mutase type II KU228_06905 PF01037 Lrp/AsnC ligand binding domain KU228_06915 PF00440 Bacterial regulatory proteins, tetR family KU228_06920 PF07715 TonB-dependent Receptor Plug Domain KU228_06920 PF00593 TonB dependent receptor KU228_06925 PF00924 Mechanosensitive ion channel KU228_06960 PF07715 TonB-dependent Receptor Plug Domain KU228_06960 PF00593 TonB dependent receptor KU228_06980 PF12848 ABC transporter KU228_06980 PF00005 ABC transporter KU228_06985 PF00582 Universal stress protein family KU228_07010 PF00690 Cation transporter/ATPase, N-terminus KU228_07010 PF00689 Cation transporting ATPase, C-terminus KU228_07015 PF02308 MgtC family KU228_07020 PF03594 Benzoate membrane transport protein KU228_07025 PF01037 Lrp/AsnC ligand binding domain KU228_07030 PF01810 LysE type translocator KU228_07035 PF00923 Transaldolase/Fructose-6-phosphate aldolase KU228_07040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_07040 PF03466 LysR substrate binding domain KU228_07050 PF02803 Thiolase, C-terminal domain KU228_07050 PF00108 Thiolase, N-terminal domain KU228_07060 PF01575 MaoC like domain KU228_07065 PF00144 Beta-lactamase KU228_07075 PF07690 Major Facilitator Superfamily KU228_07080 PF12169 DNA polymerase III subunits gamma and tau domain III KU228_07080 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KU228_07080 PF12170 DNA polymerase III tau subunit V interacting with alpha KU228_07085 PF04185 Phosphoesterase family KU228_07085 PF05506 Domain of unknown function (DUF756) KU228_07090 PF03061 Thioesterase superfamily KU228_07095 PF00465 Iron-containing alcohol dehydrogenase KU228_07105 PF01451 Low molecular weight phosphotyrosine protein phosphatase KU228_07110 PF01565 FAD binding domain KU228_07110 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KU228_07125 PF01645 Conserved region in glutamate synthase KU228_07195 PF12161 HsdM N-terminal domain KU228_07195 PF02384 N-6 DNA Methylase KU228_07225 PF01555 DNA methylase KU228_07410 PF01476 LysM domain KU228_07410 PF08525 Opacity-associated protein A N-terminal motif KU228_07410 PF01551 Peptidase family M23 KU228_07475 PF12832 MFS_1 like family KU228_07485 PF02785 Biotin carboxylase C-terminal domain KU228_07485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU228_07485 PF00289 Biotin carboxylase, N-terminal domain KU228_07490 PF00364 Biotin-requiring enzyme KU228_07495 PF01220 Dehydroquinase class II KU228_07500 PF13438 Domain of unknown function (DUF4113) KU228_07500 PF11799 impB/mucB/samB family C-terminal domain KU228_07500 PF00817 impB/mucB/samB family KU228_07510 PF00005 ABC transporter KU228_07515 PF00486 Transcriptional regulatory protein, C terminal KU228_07515 PF00072 Response regulator receiver domain KU228_07525 PF13806 Rieske-like [2Fe-2S] domain KU228_07525 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU228_07525 PF18267 Rubredoxin NAD+ reductase C-terminal domain KU228_07525 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU228_07525 PF04324 BFD-like [2Fe-2S] binding domain KU228_07525 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_07530 PF04324 BFD-like [2Fe-2S] binding domain KU228_07530 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU228_07530 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_07530 PF18267 Rubredoxin NAD+ reductase C-terminal domain KU228_07530 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU228_07535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU228_07535 PF01568 Molydopterin dinucleotide binding domain KU228_07535 PF00384 Molybdopterin oxidoreductase KU228_07535 PF04324 BFD-like [2Fe-2S] binding domain KU228_07540 PF12804 MobA-like NTP transferase domain KU228_07545 PF00384 Molybdopterin oxidoreductase KU228_07545 PF01568 Molydopterin dinucleotide binding domain KU228_07545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU228_07550 PF06463 Molybdenum Cofactor Synthesis C KU228_07550 PF04055 Radical SAM superfamily KU228_07560 PF02391 MoaE protein KU228_07565 PF00994 Probable molybdopterin binding domain KU228_07565 PF01967 MoaC family KU228_07570 PF03454 MoeA C-terminal region (domain IV) KU228_07570 PF03453 MoeA N-terminal region (domain I and II) KU228_07570 PF00994 Probable molybdopterin binding domain KU228_07575 PF01638 HxlR-like helix-turn-helix KU228_07580 PF00155 Aminotransferase class I and II KU228_07580 PF00392 Bacterial regulatory proteins, gntR family KU228_07585 PF00892 EamA-like transporter family KU228_07605 PF02635 DsrE/DsrF-like family KU228_07610 PF16363 GDP-mannose 4,6 dehydratase KU228_07615 PF10415 Fumarase C C-terminus KU228_07615 PF00206 Lyase KU228_07635 PF01266 FAD dependent oxidoreductase KU228_07645 PF02542 YgbB family KU228_07655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KU228_07655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KU228_07660 PF00440 Bacterial regulatory proteins, tetR family KU228_07665 PF00158 Sigma-54 interaction domain KU228_07665 PF00072 Response regulator receiver domain KU228_07665 PF02954 Bacterial regulatory protein, Fis family KU228_07670 PF00512 His Kinase A (phospho-acceptor) domain KU228_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_07670 PF00989 PAS fold KU228_07680 PF04055 Radical SAM superfamily KU228_07680 PF18693 TRAM domain KU228_07680 PF00919 Uncharacterized protein family UPF0004 KU228_07685 PF00696 Amino acid kinase family KU228_07690 PF01765 Ribosome recycling factor KU228_07695 PF01255 Putative undecaprenyl diphosphate synthase KU228_07705 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KU228_07705 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KU228_07705 PF13288 DXP reductoisomerase C-terminal domain KU228_07710 PF13180 PDZ domain KU228_07710 PF17820 PDZ domain KU228_07710 PF02163 Peptidase family M50 KU228_07715 PF07244 Surface antigen variable number repeat KU228_07715 PF01103 Surface antigen KU228_07725 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KU228_07725 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_07730 PF07977 FabA-like domain KU228_07735 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_07735 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KU228_07750 PF02631 RecX family KU228_07755 PF00154 recA bacterial DNA recombination protein KU228_07760 PF01479 S4 domain KU228_07765 PF13419 Haloacid dehalogenase-like hydrolase KU228_07790 PF01037 Lrp/AsnC ligand binding domain KU228_07795 PF00266 Aminotransferase class-V KU228_07800 PF00324 Amino acid permease KU228_07810 PF05922 Peptidase inhibitor I9 KU228_07810 PF00082 Subtilase family KU228_07815 PF00916 Sulfate permease family KU228_07815 PF01740 STAS domain KU228_07820 PF02586 SOS response associated peptidase (SRAP) KU228_07825 PF07995 Glucose / Sorbosone dehydrogenase KU228_07835 PF03707 Bacterial signalling protein N terminal repeat KU228_07835 PF00990 Diguanylate cyclase, GGDEF domain KU228_07835 PF00563 EAL domain KU228_07855 PF02378 Phosphotransferase system, EIIC KU228_07855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KU228_07860 PF00294 pfkB family carbohydrate kinase KU228_07865 PF00391 PEP-utilising enzyme, mobile domain KU228_07865 PF05524 PEP-utilising enzyme, N-terminal KU228_07865 PF02896 PEP-utilising enzyme, TIM barrel domain KU228_07865 PF00381 PTS HPr component phosphorylation site KU228_07865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KU228_07890 PF05525 Branched-chain amino acid transport protein KU228_07895 PF00557 Metallopeptidase family M24 KU228_07900 PF03466 LysR substrate binding domain KU228_07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_07910 PF00462 Glutaredoxin KU228_07915 PF00202 Aminotransferase class-III KU228_07920 PF00478 IMP dehydrogenase / GMP reductase domain KU228_07920 PF00571 CBS domain KU228_07945 PF02881 SRP54-type protein, helical bundle domain KU228_07945 PF00448 SRP54-type protein, GTPase domain KU228_07955 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KU228_07970 PF08173 Membrane bound YbgT-like protein KU228_07975 PF02322 Cytochrome bd terminal oxidase subunit II KU228_07980 PF01654 Cytochrome bd terminal oxidase subunit I KU228_07990 PF07290 Protein of unknown function (DUF1449) KU228_08000 PF00294 pfkB family carbohydrate kinase KU228_08005 PF07715 TonB-dependent Receptor Plug Domain KU228_08005 PF00593 TonB dependent receptor KU228_08010 PF08367 Peptidase M16C associated KU228_08010 PF00675 Insulinase (Peptidase family M16) KU228_08010 PF05193 Peptidase M16 inactive domain KU228_08015 PF02253 Phospholipase A1 KU228_08020 PF02386 Cation transport protein KU228_08025 PF02254 TrkA-N domain KU228_08025 PF02080 TrkA-C domain KU228_08030 PF00585 C-terminal regulatory domain of Threonine dehydratase KU228_08030 PF00291 Pyridoxal-phosphate dependent enzyme KU228_08035 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KU228_08050 PF01118 Semialdehyde dehydrogenase, NAD binding domain KU228_08050 PF02774 Semialdehyde dehydrogenase, dimerisation domain KU228_08060 PF02617 ATP-dependent Clp protease adaptor protein ClpS KU228_08065 PF17871 AAA lid domain KU228_08065 PF02861 Clp amino terminal domain, pathogenicity island component KU228_08065 PF07724 AAA domain (Cdc48 subfamily) KU228_08065 PF00004 ATPase family associated with various cellular activities (AAA) KU228_08065 PF10431 C-terminal, D2-small domain, of ClpB protein KU228_08070 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KU228_08075 PF00793 DAHP synthetase I family KU228_08090 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_08090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU228_08120 PF00117 Glutamine amidotransferase class-I KU228_08120 PF06418 CTP synthase N-terminus KU228_08125 PF00793 DAHP synthetase I family KU228_08130 PF03952 Enolase, N-terminal domain KU228_08130 PF00113 Enolase, C-terminal TIM barrel domain KU228_08135 PF04239 Protein of unknown function (DUF421) KU228_08140 PF04977 Septum formation initiator KU228_08145 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KU228_08150 PF01144 Coenzyme A transferase KU228_08155 PF01144 Coenzyme A transferase KU228_08160 PF00108 Thiolase, N-terminal domain KU228_08160 PF02803 Thiolase, C-terminal domain KU228_08165 PF10397 Adenylosuccinate lyase C-terminus KU228_08165 PF00206 Lyase KU228_08170 PF00561 alpha/beta hydrolase fold KU228_08175 PF07690 Major Facilitator Superfamily KU228_08180 PF02627 Carboxymuconolactone decarboxylase family KU228_08185 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KU228_08185 PF00775 Dioxygenase KU228_08190 PF00775 Dioxygenase KU228_08195 PF01487 Type I 3-dehydroquinase KU228_08200 PF05048 Periplasmic copper-binding protein (NosD) KU228_08205 PF04966 Carbohydrate-selective porin, OprB family KU228_08210 PF01011 PQQ enzyme repeat KU228_08210 PF13360 PQQ-like domain KU228_08220 PF04143 Sulphur transport KU228_08230 PF00753 Metallo-beta-lactamase superfamily KU228_08235 PF09339 IclR helix-turn-helix domain KU228_08235 PF01614 Bacterial transcriptional regulator KU228_08240 PF03466 LysR substrate binding domain KU228_08240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_08245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_08245 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_08245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_08260 PF00106 short chain dehydrogenase KU228_08270 PF07690 Major Facilitator Superfamily KU228_08280 PF01425 Amidase KU228_08285 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU228_08300 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU228_08300 PF00355 Rieske [2Fe-2S] domain KU228_08315 PF00175 Oxidoreductase NAD-binding domain KU228_08315 PF00111 2Fe-2S iron-sulfur cluster binding domain KU228_08320 PF01613 Flavin reductase like domain KU228_08325 PF12833 Helix-turn-helix domain KU228_08325 PF02311 AraC-like ligand binding domain KU228_08330 PF02728 Copper amine oxidase, N3 domain KU228_08330 PF01179 Copper amine oxidase, enzyme domain KU228_08330 PF07833 Copper amine oxidase N-terminal domain KU228_08330 PF02727 Copper amine oxidase, N2 domain KU228_08340 PF00171 Aldehyde dehydrogenase family KU228_08345 PF01804 Penicillin amidase KU228_08350 PF12146 Serine aminopeptidase, S33 KU228_08355 PF00108 Thiolase, N-terminal domain KU228_08355 PF02803 Thiolase, C-terminal domain KU228_08360 PF01144 Coenzyme A transferase KU228_08365 PF01144 Coenzyme A transferase KU228_08370 PF04444 Catechol dioxygenase N terminus KU228_08370 PF00775 Dioxygenase KU228_08375 PF02426 Muconolactone delta-isomerase KU228_08380 PF13378 Enolase C-terminal domain-like KU228_08380 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KU228_08385 PF03466 LysR substrate binding domain KU228_08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_08395 PF07729 FCD domain KU228_08395 PF00392 Bacterial regulatory proteins, gntR family KU228_08400 PF00920 Dehydratase family KU228_08405 PF07690 Major Facilitator Superfamily KU228_08415 PF00171 Aldehyde dehydrogenase family KU228_08435 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_08435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_08435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_08445 PF02954 Bacterial regulatory protein, Fis family KU228_08445 PF06506 Propionate catabolism activator KU228_08445 PF00158 Sigma-54 interaction domain KU228_08450 PF00501 AMP-binding enzyme KU228_08450 PF13193 AMP-binding enzyme C-terminal domain KU228_08455 PF04341 Protein of unknown function, DUF485 KU228_08460 PF00474 Sodium:solute symporter family KU228_08465 PF08240 Alcohol dehydrogenase GroES-like domain KU228_08465 PF00107 Zinc-binding dehydrogenase KU228_08470 PF00171 Aldehyde dehydrogenase family KU228_08480 PF00561 alpha/beta hydrolase fold KU228_08485 PF00199 Catalase KU228_08485 PF06628 Catalase-related immune-responsive KU228_08500 PF07859 alpha/beta hydrolase fold KU228_08505 PF01047 MarR family KU228_08510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU228_08510 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_08515 PF00106 short chain dehydrogenase KU228_08520 PF01872 RibD C-terminal domain KU228_08525 PF00376 MerR family regulatory protein KU228_08525 PF09278 MerR, DNA binding KU228_08535 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_08545 PF12706 Beta-lactamase superfamily domain KU228_08550 PF00440 Bacterial regulatory proteins, tetR family KU228_08550 PF08359 YsiA-like protein, C-terminal region KU228_08560 PF00857 Isochorismatase family KU228_08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_08565 PF03466 LysR substrate binding domain KU228_08570 PF07995 Glucose / Sorbosone dehydrogenase KU228_08575 PF02254 TrkA-N domain KU228_08575 PF00999 Sodium/hydrogen exchanger family KU228_08585 PF07687 Peptidase dimerisation domain KU228_08585 PF01546 Peptidase family M20/M25/M40 KU228_08595 PF08479 POTRA domain, ShlB-type KU228_08595 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KU228_08595 PF17287 POTRA domain KU228_08600 PF13332 Hemagglutinin repeat KU228_08600 PF13018 Extended Signal Peptide of Type V secretion system KU228_08600 PF04829 Pre-toxin domain with VENN motif KU228_08600 PF05860 haemagglutination activity domain KU228_08615 PF07690 Major Facilitator Superfamily KU228_08620 PF04909 Amidohydrolase KU228_08630 PF00392 Bacterial regulatory proteins, gntR family KU228_08630 PF07702 UTRA domain KU228_08635 PF08450 SMP-30/Gluconolactonase/LRE-like region KU228_08645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_08645 PF03466 LysR substrate binding domain KU228_08665 PF07690 Major Facilitator Superfamily KU228_08670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU228_08670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU228_08670 PF01842 ACT domain KU228_08675 PF03737 Aldolase/RraA KU228_08700 PF00486 Transcriptional regulatory protein, C terminal KU228_08700 PF00072 Response regulator receiver domain KU228_08705 PF00529 HlyD membrane-fusion protein of T1SS KU228_08705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU228_08710 PF00873 AcrB/AcrD/AcrF family KU228_08715 PF02321 Outer membrane efflux protein KU228_08720 PF12146 Serine aminopeptidase, S33 KU228_08725 PF00743 Flavin-binding monooxygenase-like KU228_08730 PF01593 Flavin containing amine oxidoreductase KU228_08745 PF01266 FAD dependent oxidoreductase KU228_08765 PF16970 Type-1 fimbrial protein, A KU228_08775 PF02753 Pili assembly chaperone PapD, C-terminal domain KU228_08775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KU228_08780 PF13953 PapC C-terminal domain KU228_08780 PF13954 PapC N-terminal domain KU228_08780 PF00577 Outer membrane usher protein KU228_08785 PF00419 Fimbrial protein KU228_08795 PF08240 Alcohol dehydrogenase GroES-like domain KU228_08795 PF00107 Zinc-binding dehydrogenase KU228_08805 PF00199 Catalase KU228_08820 PF13091 PLD-like domain KU228_08840 PF01244 Membrane dipeptidase (Peptidase family M19) KU228_08845 PF13186 Iron-sulfur cluster-binding domain KU228_08845 PF04055 Radical SAM superfamily KU228_08850 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KU228_08855 PF03070 TENA/THI-4/PQQC family KU228_08860 PF12706 Beta-lactamase superfamily domain KU228_08865 PF08042 PqqA family KU228_08870 PF02503 Polyphosphate kinase middle domain KU228_08870 PF13090 Polyphosphate kinase C-terminal domain 2 KU228_08870 PF17941 Polyphosphate kinase C-terminal domain 1 KU228_08870 PF13089 Polyphosphate kinase N-terminal domain KU228_08875 PF00149 Calcineurin-like phosphoesterase KU228_08890 PF00550 Phosphopantetheine attachment site KU228_08890 PF00857 Isochorismatase family KU228_08895 PF00106 short chain dehydrogenase KU228_08900 PF00005 ABC transporter KU228_08900 PF03459 TOBE domain KU228_08905 PF00528 Binding-protein-dependent transport system inner membrane component KU228_08915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_08915 PF03459 TOBE domain KU228_08920 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU228_08920 PF00355 Rieske [2Fe-2S] domain KU228_08925 PF00866 Ring hydroxylating beta subunit KU228_08945 PF12833 Helix-turn-helix domain KU228_08945 PF14525 AraC-binding-like domain KU228_08955 PF01613 Flavin reductase like domain KU228_08970 PF01738 Dienelactone hydrolase family KU228_08980 PF12833 Helix-turn-helix domain KU228_08980 PF06719 AraC-type transcriptional regulator N-terminus KU228_09005 PF03466 LysR substrate binding domain KU228_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_09010 PF01144 Coenzyme A transferase KU228_09015 PF01144 Coenzyme A transferase KU228_09020 PF02667 Short chain fatty acid transporter KU228_09025 PF02803 Thiolase, C-terminal domain KU228_09025 PF00108 Thiolase, N-terminal domain KU228_09030 PF03466 LysR substrate binding domain KU228_09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_09035 PF03466 LysR substrate binding domain KU228_09035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_09050 PF00206 Lyase KU228_09050 PF10415 Fumarase C C-terminus KU228_09055 PF00593 TonB dependent receptor KU228_09055 PF07715 TonB-dependent Receptor Plug Domain KU228_09060 PF00083 Sugar (and other) transporter KU228_09075 PF00005 ABC transporter KU228_09080 PF00528 Binding-protein-dependent transport system inner membrane component KU228_09085 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KU228_09100 PF00392 Bacterial regulatory proteins, gntR family KU228_09100 PF07702 UTRA domain KU228_09110 PF02525 Flavodoxin-like fold KU228_09115 PF01638 HxlR-like helix-turn-helix KU228_09120 PF06445 GyrI-like small molecule binding domain KU228_09120 PF12833 Helix-turn-helix domain KU228_09135 PF01925 Sulfite exporter TauE/SafE KU228_09140 PF04273 Putative phosphatase (DUF442) KU228_09140 PF00753 Metallo-beta-lactamase superfamily KU228_09145 PF00753 Metallo-beta-lactamase superfamily KU228_09145 PF04273 Putative phosphatase (DUF442) KU228_09150 PF00158 Sigma-54 interaction domain KU228_09150 PF00072 Response regulator receiver domain KU228_09150 PF02954 Bacterial regulatory protein, Fis family KU228_09155 PF01062 Bestrophin, RFP-TM, chloride channel KU228_09160 PF00107 Zinc-binding dehydrogenase KU228_09160 PF08240 Alcohol dehydrogenase GroES-like domain KU228_09165 PF00106 short chain dehydrogenase KU228_09170 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_09170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU228_09175 PF02817 e3 binding domain KU228_09175 PF00364 Biotin-requiring enzyme KU228_09175 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU228_09180 PF02780 Transketolase, C-terminal domain KU228_09180 PF02779 Transketolase, pyrimidine binding domain KU228_09185 PF00676 Dehydrogenase E1 component KU228_09190 PF04055 Radical SAM superfamily KU228_09205 PF00990 Diguanylate cyclase, GGDEF domain KU228_09205 PF08448 PAS fold KU228_09210 PF01264 Chorismate synthase KU228_09215 PF05175 Methyltransferase small domain KU228_09220 PF00291 Pyridoxal-phosphate dependent enzyme KU228_09230 PF00004 ATPase family associated with various cellular activities (AAA) KU228_09230 PF17862 AAA+ lid domain KU228_09230 PF01434 Peptidase family M41 KU228_09240 PF05166 YcgL domain KU228_09260 PF01612 3'-5' exonuclease KU228_09260 PF00570 HRDC domain KU228_09265 PF02132 RecR protein KU228_09265 PF13662 Toprim domain KU228_09270 PF02575 YbaB/EbfC DNA-binding family KU228_09280 PF01053 Cys/Met metabolism PLP-dependent enzyme KU228_09285 PF00561 alpha/beta hydrolase fold KU228_09290 PF08241 Methyltransferase domain KU228_09320 PF01230 HIT domain KU228_09355 PF00005 ABC transporter KU228_09360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU228_09370 PF02684 Lipid-A-disaccharide synthetase KU228_09375 PF00593 TonB dependent receptor KU228_09375 PF07715 TonB-dependent Receptor Plug Domain KU228_09395 PF01925 Sulfite exporter TauE/SafE KU228_09400 PF00793 DAHP synthetase I family KU228_09405 PF02654 Cobalamin-5-phosphate synthase KU228_09420 PF02277 Phosphoribosyltransferase KU228_09425 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KU228_09435 PF13419 Haloacid dehalogenase-like hydrolase KU228_09460 PF00593 TonB dependent receptor KU228_09460 PF07715 TonB-dependent Receptor Plug Domain KU228_09475 PF06276 Ferric iron reductase FhuF-like transporter KU228_09475 PF04183 IucA / IucC family KU228_09480 PF06276 Ferric iron reductase FhuF-like transporter KU228_09480 PF04183 IucA / IucC family KU228_09485 PF07690 Major Facilitator Superfamily KU228_09490 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KU228_09495 PF06276 Ferric iron reductase FhuF-like transporter KU228_09495 PF04183 IucA / IucC family KU228_09500 PF04073 Aminoacyl-tRNA editing domain KU228_09510 PF03109 ABC1 family KU228_09515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_09515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_09515 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_09520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_09520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_09520 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_09525 PF00487 Fatty acid desaturase KU228_09530 PF12852 Cupin KU228_09530 PF12833 Helix-turn-helix domain KU228_09535 PF09312 SurA N-terminal domain KU228_09535 PF00639 PPIC-type PPIASE domain KU228_09540 PF00216 Bacterial DNA-binding protein KU228_09555 PF02082 Transcriptional regulator KU228_09560 PF00266 Aminotransferase class-V KU228_09565 PF01592 NifU-like N terminal domain KU228_09570 PF01521 Iron-sulphur cluster biosynthesis KU228_09575 PF00226 DnaJ domain KU228_09575 PF07743 HSCB C-terminal oligomerisation domain KU228_09580 PF00012 Hsp70 protein KU228_09585 PF00111 2Fe-2S iron-sulfur cluster binding domain KU228_09590 PF00211 Adenylate and Guanylate cyclase catalytic domain KU228_09600 PF00271 Helicase conserved C-terminal domain KU228_09600 PF03461 TRCF domain KU228_09600 PF17757 UvrB interaction domain KU228_09600 PF02559 CarD-like/TRCF domain KU228_09600 PF00270 DEAD/DEAH box helicase KU228_09620 PF03737 Aldolase/RraA KU228_09625 PF13460 NAD(P)H-binding KU228_09630 PF01649 Ribosomal protein S20 KU228_09640 PF00459 Inositol monophosphatase family KU228_09655 PF00005 ABC transporter KU228_09655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KU228_09660 PF00528 Binding-protein-dependent transport system inner membrane component KU228_09665 PF00528 Binding-protein-dependent transport system inner membrane component KU228_09670 PF01432 Peptidase family M3 KU228_09690 PF07715 TonB-dependent Receptor Plug Domain KU228_09690 PF00593 TonB dependent receptor KU228_09700 PF01618 MotA/TolQ/ExbB proton channel family KU228_09705 PF02472 Biopolymer transport protein ExbD/TolR KU228_09710 PF02472 Biopolymer transport protein ExbD/TolR KU228_09720 PF01274 Malate synthase KU228_09725 PF03969 AFG1-like ATPase KU228_09735 PF00743 Flavin-binding monooxygenase-like KU228_09745 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KU228_09755 PF00216 Bacterial DNA-binding protein KU228_09760 PF00575 S1 RNA binding domain KU228_09765 PF02224 Cytidylate kinase KU228_09775 PF14437 MafB19-like deaminase KU228_09785 PF03167 Uracil DNA glycosylase superfamily KU228_09795 PF03934 Type II secretion system (T2SS), protein K KU228_09800 PF07963 Prokaryotic N-terminal methylation motif KU228_09800 PF11612 Type II secretion system (T2SS), protein J KU228_09805 PF07963 Prokaryotic N-terminal methylation motif KU228_09805 PF02501 Type II secretion system (T2SS), protein I KU228_09820 PF01026 TatD related DNase KU228_09830 PF09115 DNA polymerase III, delta subunit, C terminal KU228_09835 PF02348 Cytidylyltransferase KU228_09840 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KU228_09845 PF00005 ABC transporter KU228_09845 PF00664 ABC transporter transmembrane region KU228_09855 PF01618 MotA/TolQ/ExbB proton channel family KU228_09860 PF17762 HTH domain found in ParB protein KU228_09860 PF02195 ParB-like nuclease domain KU228_09865 PF13614 AAA domain KU228_09870 PF02527 rRNA small subunit methyltransferase G KU228_09875 PF00483 Nucleotidyl transferase KU228_09880 PF01636 Phosphotransferase enzyme family KU228_09885 PF04453 LPS transport system D KU228_09885 PF03968 OstA-like protein KU228_09890 PF00639 PPIC-type PPIASE domain KU228_09890 PF09312 SurA N-terminal domain KU228_09895 PF01116 Fructose-bisphosphate aldolase class-II KU228_09905 PF00162 Phosphoglycerate kinase KU228_09915 PF02545 Maf-like protein KU228_09920 PF08007 Cupin superfamily protein KU228_09940 PF00375 Sodium:dicarboxylate symporter family KU228_09945 PF06912 Protein of unknown function (DUF1275) KU228_09950 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KU228_09955 PF00664 ABC transporter transmembrane region KU228_09955 PF00005 ABC transporter KU228_09965 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KU228_09965 PF12833 Helix-turn-helix domain KU228_09970 PF01597 Glycine cleavage H-protein KU228_09975 PF02146 Sir2 family KU228_09980 PF00474 Sodium:solute symporter family KU228_09985 PF01037 Lrp/AsnC ligand binding domain KU228_09990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KU228_09990 PF01619 Proline dehydrogenase KU228_09990 PF14850 DNA-binding domain of Proline dehydrogenase KU228_09990 PF00171 Aldehyde dehydrogenase family KU228_09995 PF04229 GrpB protein KU228_10000 PF05958 tRNA (Uracil-5-)-methyltransferase KU228_10010 PF09992 Phosphodiester glycosidase KU228_10020 PF04264 YceI-like domain KU228_10030 PF02779 Transketolase, pyrimidine binding domain KU228_10030 PF02780 Transketolase, C-terminal domain KU228_10030 PF00456 Transketolase, thiamine diphosphate binding domain KU228_10035 PF00438 S-adenosylmethionine synthetase, N-terminal domain KU228_10035 PF02772 S-adenosylmethionine synthetase, central domain KU228_10035 PF02773 S-adenosylmethionine synthetase, C-terminal domain KU228_10055 PF00905 Penicillin binding protein transpeptidase domain KU228_10070 PF02075 Crossover junction endodeoxyribonuclease RuvC KU228_10075 PF01256 Carbohydrate kinase KU228_10075 PF03853 YjeF-related protein N-terminus KU228_10080 PF08331 Domain of unknown function (DUF1730) KU228_10085 PF06968 Biotin and Thiamin Synthesis associated domain KU228_10085 PF04055 Radical SAM superfamily KU228_10100 PF16970 Type-1 fimbrial protein, A KU228_10105 PF02753 Pili assembly chaperone PapD, C-terminal domain KU228_10105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KU228_10110 PF00577 Outer membrane usher protein KU228_10110 PF13953 PapC C-terminal domain KU228_10110 PF13954 PapC N-terminal domain KU228_10130 PF00892 EamA-like transporter family KU228_10140 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU228_10150 PF03466 LysR substrate binding domain KU228_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10170 PF00440 Bacterial regulatory proteins, tetR family KU228_10180 PF01709 Transcriptional regulator KU228_10185 PF01037 Lrp/AsnC ligand binding domain KU228_10195 PF00005 ABC transporter KU228_10200 PF00528 Binding-protein-dependent transport system inner membrane component KU228_10205 PF00528 Binding-protein-dependent transport system inner membrane component KU228_10220 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU228_10220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_10230 PF00296 Luciferase-like monooxygenase KU228_10235 PF03180 NLPA lipoprotein KU228_10240 PF03180 NLPA lipoprotein KU228_10245 PF09383 NIL domain KU228_10245 PF00005 ABC transporter KU228_10250 PF00528 Binding-protein-dependent transport system inner membrane component KU228_10255 PF06071 Protein of unknown function (DUF933) KU228_10255 PF01926 50S ribosome-binding GTPase KU228_10280 PF03591 AzlC protein KU228_10285 PF05437 Branched-chain amino acid transport protein (AzlD) KU228_10295 PF02222 ATP-grasp domain KU228_10300 PF08335 GlnD PII-uridylyltransferase KU228_10300 PF01966 HD domain KU228_10300 PF01909 Nucleotidyltransferase domain KU228_10305 PF00155 Aminotransferase class I and II KU228_10315 PF12833 Helix-turn-helix domain KU228_10315 PF12852 Cupin KU228_10320 PF00255 Glutathione peroxidase KU228_10325 PF01641 SelR domain KU228_10330 PF00155 Aminotransferase class I and II KU228_10335 PF00375 Sodium:dicarboxylate symporter family KU228_10340 PF00710 Asparaginase, N-terminal KU228_10340 PF17763 Glutaminase/Asparaginase C-terminal domain KU228_10345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KU228_10345 PF14579 Helix-hairpin-helix motif KU228_10345 PF02811 PHP domain KU228_10345 PF01336 OB-fold nucleic acid binding domain KU228_10345 PF07733 Bacterial DNA polymerase III alpha NTPase domain KU228_10350 PF00588 SpoU rRNA Methylase family KU228_10355 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_10370 PF13192 Thioredoxin domain KU228_10370 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_10385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10385 PF03466 LysR substrate binding domain KU228_10390 PF01758 Sodium Bile acid symporter family KU228_10395 PF01022 Bacterial regulatory protein, arsR family KU228_10400 PF03960 ArsC family KU228_10410 PF13382 Adenine deaminase C-terminal domain KU228_10410 PF01979 Amidohydrolase family KU228_10420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10420 PF03466 LysR substrate binding domain KU228_10430 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU228_10435 PF01177 Asp/Glu/Hydantoin racemase KU228_10440 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KU228_10445 PF00528 Binding-protein-dependent transport system inner membrane component KU228_10450 PF00005 ABC transporter KU228_10455 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KU228_10465 PF00083 Sugar (and other) transporter KU228_10470 PF00296 Luciferase-like monooxygenase KU228_10475 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU228_10475 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_10475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_10490 PF01654 Cytochrome bd terminal oxidase subunit I KU228_10495 PF02322 Cytochrome bd terminal oxidase subunit II KU228_10505 PF00392 Bacterial regulatory proteins, gntR family KU228_10505 PF00155 Aminotransferase class I and II KU228_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10510 PF03466 LysR substrate binding domain KU228_10525 PF00698 Acyl transferase domain KU228_10530 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KU228_10540 PF01039 Carboxyl transferase domain KU228_10545 PF06857 Malonate decarboxylase delta subunit (MdcD) KU228_10550 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KU228_10555 PF16957 Malonate decarboxylase, alpha subunit, transporter KU228_10560 PF07690 Major Facilitator Superfamily KU228_10575 PF00155 Aminotransferase class I and II KU228_10575 PF00392 Bacterial regulatory proteins, gntR family KU228_10580 PF04172 LrgB-like family KU228_10585 PF03788 LrgA family KU228_10590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10590 PF03466 LysR substrate binding domain KU228_10595 PF14834 Glutathione S-transferase, C-terminal domain KU228_10595 PF02798 Glutathione S-transferase, N-terminal domain KU228_10600 PF02798 Glutathione S-transferase, N-terminal domain KU228_10605 PF03466 LysR substrate binding domain KU228_10605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10615 PF00581 Rhodanese-like domain KU228_10620 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_10630 PF00266 Aminotransferase class-V KU228_10640 PF01810 LysE type translocator KU228_10645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10645 PF03466 LysR substrate binding domain KU228_10655 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU228_10660 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU228_10665 PF00005 ABC transporter KU228_10670 PF00528 Binding-protein-dependent transport system inner membrane component KU228_10675 PF00528 Binding-protein-dependent transport system inner membrane component KU228_10690 PF00072 Response regulator receiver domain KU228_10695 PF09308 LuxQ, periplasmic KU228_10695 PF00512 His Kinase A (phospho-acceptor) domain KU228_10695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_10695 PF00072 Response regulator receiver domain KU228_10705 PF13404 AsnC-type helix-turn-helix domain KU228_10705 PF01037 Lrp/AsnC ligand binding domain KU228_10715 PF00717 Peptidase S24-like KU228_10740 PF00199 Catalase KU228_10740 PF06628 Catalase-related immune-responsive KU228_10740 PF18011 C-terminal domain found in long catalases KU228_10750 PF02464 Competence-damaged protein KU228_10750 PF00994 Probable molybdopterin binding domain KU228_10750 PF18146 Damage-inducible protein CinA KH domain KU228_10785 PF03466 LysR substrate binding domain KU228_10785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10805 PF00501 AMP-binding enzyme KU228_10805 PF13193 AMP-binding enzyme C-terminal domain KU228_10810 PF00440 Bacterial regulatory proteins, tetR family KU228_10815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_10815 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_10815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_10820 PF01039 Carboxyl transferase domain KU228_10825 PF00378 Enoyl-CoA hydratase/isomerase KU228_10830 PF02785 Biotin carboxylase C-terminal domain KU228_10830 PF00289 Biotin carboxylase, N-terminal domain KU228_10830 PF00364 Biotin-requiring enzyme KU228_10830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU228_10830 PF18140 Propionyl-coenzyme A carboxylase BT domain KU228_10835 PF00682 HMGL-like KU228_10840 PF03466 LysR substrate binding domain KU228_10840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_10855 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_10855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_10855 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU228_10855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_10865 PF07690 Major Facilitator Superfamily KU228_10875 PF01144 Coenzyme A transferase KU228_10880 PF01144 Coenzyme A transferase KU228_10885 PF07690 Major Facilitator Superfamily KU228_10890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_10890 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_10890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_10895 PF00378 Enoyl-CoA hydratase/isomerase KU228_10905 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU228_10905 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KU228_10905 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU228_10910 PF02803 Thiolase, C-terminal domain KU228_10910 PF00108 Thiolase, N-terminal domain KU228_10915 PF09339 IclR helix-turn-helix domain KU228_10920 PF07690 Major Facilitator Superfamily KU228_10925 PF03060 Nitronate monooxygenase KU228_10930 PF00378 Enoyl-CoA hydratase/isomerase KU228_10935 PF09339 IclR helix-turn-helix domain KU228_10940 PF02515 CoA-transferase family III KU228_10945 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_10945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_10945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_10950 PF07690 Major Facilitator Superfamily KU228_10955 PF13419 Haloacid dehalogenase-like hydrolase KU228_10960 PF00266 Aminotransferase class-V KU228_10965 PF01266 FAD dependent oxidoreductase KU228_10970 PF00528 Binding-protein-dependent transport system inner membrane component KU228_10975 PF00005 ABC transporter KU228_10975 PF08402 TOBE domain KU228_10985 PF00392 Bacterial regulatory proteins, gntR family KU228_10985 PF07702 UTRA domain KU228_10990 PF01494 FAD binding domain KU228_10995 PF01614 Bacterial transcriptional regulator KU228_10995 PF09339 IclR helix-turn-helix domain KU228_11000 PF02525 Flavodoxin-like fold KU228_11005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_11005 PF03466 LysR substrate binding domain KU228_11010 PF02627 Carboxymuconolactone decarboxylase family KU228_11015 PF00171 Aldehyde dehydrogenase family KU228_11025 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU228_11035 PF00171 Aldehyde dehydrogenase family KU228_11040 PF00296 Luciferase-like monooxygenase KU228_11045 PF01613 Flavin reductase like domain KU228_11050 PF12697 Alpha/beta hydrolase family KU228_11070 PF01292 Prokaryotic cytochrome b561 KU228_11075 PF00199 Catalase KU228_11110 PF03061 Thioesterase superfamily KU228_11115 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_11120 PF08223 PaaX-like protein C-terminal domain KU228_11120 PF07848 PaaX-like protein KU228_11125 PF00501 AMP-binding enzyme KU228_11125 PF14535 AMP-binding enzyme C-terminal domain KU228_11130 PF02803 Thiolase, C-terminal domain KU228_11130 PF00108 Thiolase, N-terminal domain KU228_11135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU228_11135 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KU228_11135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU228_11140 PF00378 Enoyl-CoA hydratase/isomerase KU228_11145 PF00378 Enoyl-CoA hydratase/isomerase KU228_11150 PF00970 Oxidoreductase FAD-binding domain KU228_11150 PF00111 2Fe-2S iron-sulfur cluster binding domain KU228_11150 PF00175 Oxidoreductase NAD-binding domain KU228_11155 PF01883 Iron-sulfur cluster assembly protein KU228_11160 PF05138 Phenylacetic acid catabolic protein KU228_11165 PF06243 Phenylacetic acid degradation B KU228_11170 PF05138 Phenylacetic acid catabolic protein KU228_11175 PF00171 Aldehyde dehydrogenase family KU228_11175 PF01575 MaoC like domain KU228_11180 PF03313 Serine dehydratase alpha chain KU228_11180 PF03315 Serine dehydratase beta chain KU228_11185 PF13520 Amino acid permease KU228_11190 PF00171 Aldehyde dehydrogenase family KU228_11195 PF00083 Sugar (and other) transporter KU228_11205 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_11205 PF04324 BFD-like [2Fe-2S] binding domain KU228_11215 PF01266 FAD dependent oxidoreductase KU228_11220 PF05544 Proline racemase KU228_11225 PF00392 Bacterial regulatory proteins, gntR family KU228_11235 PF00701 Dihydrodipicolinate synthetase family KU228_11245 PF00376 MerR family regulatory protein KU228_11245 PF09278 MerR, DNA binding KU228_11260 PF02677 Epoxyqueuosine reductase QueH KU228_11275 PF07690 Major Facilitator Superfamily KU228_11280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KU228_11290 PF03466 LysR substrate binding domain KU228_11290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_11310 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KU228_11315 PF06812 ImpA, N-terminal, type VI secretion system KU228_11320 PF00004 ATPase family associated with various cellular activities (AAA) KU228_11320 PF07724 AAA domain (Cdc48 subfamily) KU228_11320 PF17871 AAA lid domain KU228_11320 PF10431 C-terminal, D2-small domain, of ClpB protein KU228_11330 PF00691 OmpA family KU228_11330 PF01389 OmpA-like transmembrane domain KU228_11340 PF06761 Intracellular multiplication and human macrophage-killing KU228_11340 PF06744 Type VI secretion protein IcmF C-terminal KU228_11340 PF14331 ImcF-related N-terminal domain KU228_11355 PF05947 Type VI secretion system, TssF KU228_11370 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KU228_11395 PF00005 ABC transporter KU228_11400 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU228_11405 PF01425 Amidase KU228_11410 PF01402 Ribbon-helix-helix protein, copG family KU228_11410 PF08753 NikR C terminal nickel binding domain KU228_11430 PF02525 Flavodoxin-like fold KU228_11435 PF02785 Biotin carboxylase C-terminal domain KU228_11435 PF00289 Biotin carboxylase, N-terminal domain KU228_11435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU228_11450 PF08240 Alcohol dehydrogenase GroES-like domain KU228_11450 PF13823 Alcohol dehydrogenase GroES-associated KU228_11450 PF00107 Zinc-binding dehydrogenase KU228_11460 PF00440 Bacterial regulatory proteins, tetR family KU228_11480 PF00654 Voltage gated chloride channel KU228_11485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU228_11485 PF00289 Biotin carboxylase, N-terminal domain KU228_11485 PF00364 Biotin-requiring enzyme KU228_11485 PF02785 Biotin carboxylase C-terminal domain KU228_11495 PF07286 Protein of unknown function (DUF1445) KU228_11500 PF03746 LamB/YcsF family KU228_11505 PF01566 Natural resistance-associated macrophage protein KU228_11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_11510 PF03466 LysR substrate binding domain KU228_11525 PF03527 RHS protein KU228_11525 PF05593 RHS Repeat KU228_11530 PF13296 Putative type VI secretion system Rhs element Vgr KU228_11530 PF04717 Type VI secretion system, phage-baseplate injector KU228_11530 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU228_11540 PF13419 Haloacid dehalogenase-like hydrolase KU228_11560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU228_11560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU228_11580 PF07690 Major Facilitator Superfamily KU228_11590 PF03279 Bacterial lipid A biosynthesis acyltransferase KU228_11595 PF00563 EAL domain KU228_11595 PF00990 Diguanylate cyclase, GGDEF domain KU228_11595 PF03707 Bacterial signalling protein N terminal repeat KU228_11600 PF00892 EamA-like transporter family KU228_11605 PF01037 Lrp/AsnC ligand binding domain KU228_11610 PF01624 MutS domain I KU228_11610 PF05192 MutS domain III KU228_11610 PF05190 MutS family domain IV KU228_11610 PF00488 MutS domain V KU228_11610 PF05188 MutS domain II KU228_11620 PF00037 4Fe-4S binding domain KU228_11620 PF11953 Domain of unknown function (DUF3470) KU228_11630 PF01596 O-methyltransferase KU228_11640 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_11645 PF01205 Uncharacterized protein family UPF0029 KU228_11655 PF03412 Peptidase C39 family KU228_11655 PF00664 ABC transporter transmembrane region KU228_11655 PF00005 ABC transporter KU228_11660 PF02321 Outer membrane efflux protein KU228_11665 PF00005 ABC transporter KU228_11665 PF12399 Branched-chain amino acid ATP-binding cassette transporter KU228_11670 PF03968 OstA-like protein KU228_11685 PF01380 SIS domain KU228_11685 PF00571 CBS domain KU228_11690 PF01406 tRNA synthetases class I (C) catalytic domain KU228_11690 PF09190 DALR domain KU228_11715 PF01638 HxlR-like helix-turn-helix KU228_11720 PF07690 Major Facilitator Superfamily KU228_11745 PF03807 NADP oxidoreductase coenzyme F420-dependent KU228_11745 PF14748 Pyrroline-5-carboxylate reductase dimerisation KU228_11755 PF00313 'Cold-shock' DNA-binding domain KU228_11760 PF01810 LysE type translocator KU228_11790 PF02601 Exonuclease VII, large subunit KU228_11790 PF13742 OB-fold nucleic acid binding domain KU228_11825 PF09278 MerR, DNA binding KU228_11825 PF00376 MerR family regulatory protein KU228_11830 PF00403 Heavy-metal-associated domain KU228_11835 PF00403 Heavy-metal-associated domain KU228_11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_11840 PF03466 LysR substrate binding domain KU228_11845 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU228_11845 PF00355 Rieske [2Fe-2S] domain KU228_11850 PF00866 Ring hydroxylating beta subunit KU228_11855 PF00111 2Fe-2S iron-sulfur cluster binding domain KU228_11855 PF00175 Oxidoreductase NAD-binding domain KU228_11855 PF00970 Oxidoreductase FAD-binding domain KU228_11860 PF00106 short chain dehydrogenase KU228_11865 PF03594 Benzoate membrane transport protein KU228_11870 PF07690 Major Facilitator Superfamily KU228_11880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KU228_11880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KU228_11885 PF00270 DEAD/DEAH box helicase KU228_11885 PF11898 Domain of unknown function (DUF3418) KU228_11885 PF04408 Helicase associated domain (HA2) KU228_11885 PF00271 Helicase conserved C-terminal domain KU228_11885 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KU228_11890 PF10417 C-terminal domain of 1-Cys peroxiredoxin KU228_11890 PF00578 AhpC/TSA family KU228_11910 PF13192 Thioredoxin domain KU228_11910 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_11920 PF00043 Glutathione S-transferase, C-terminal domain KU228_11920 PF02798 Glutathione S-transferase, N-terminal domain KU228_11930 PF02390 Putative methyltransferase KU228_11935 PF00043 Glutathione S-transferase, C-terminal domain KU228_11935 PF13417 Glutathione S-transferase, N-terminal domain KU228_11945 PF13488 Glycine zipper KU228_11945 PF00691 OmpA family KU228_11950 PF01979 Amidohydrolase family KU228_11955 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KU228_11955 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KU228_11965 PF01170 Putative RNA methylase family UPF0020 KU228_11965 PF10672 S-adenosylmethionine-dependent methyltransferase KU228_11965 PF02926 THUMP domain KU228_11980 PF00004 ATPase family associated with various cellular activities (AAA) KU228_11980 PF07724 AAA domain (Cdc48 subfamily) KU228_11980 PF17871 AAA lid domain KU228_11980 PF02861 Clp amino terminal domain, pathogenicity island component KU228_11980 PF10431 C-terminal, D2-small domain, of ClpB protein KU228_11995 PF02566 OsmC-like protein KU228_12005 PF00027 Cyclic nucleotide-binding domain KU228_12005 PF13545 Crp-like helix-turn-helix domain KU228_12015 PF00248 Aldo/keto reductase family KU228_12030 PF00709 Adenylosuccinate synthetase KU228_12035 PF13393 Histidyl-tRNA synthetase KU228_12040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KU228_12040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KU228_12045 PF02272 DHHA1 domain KU228_12045 PF01411 tRNA synthetases class II (A) KU228_12045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KU228_12050 PF00696 Amino acid kinase family KU228_12050 PF13840 ACT domain KU228_12050 PF01842 ACT domain KU228_12055 PF02599 Global regulator protein family KU228_12060 PF01351 Ribonuclease HII KU228_12070 PF01292 Prokaryotic cytochrome b561 KU228_12075 PF00962 Adenosine/AMP deaminase KU228_12080 PF00860 Permease family KU228_12090 PF00743 Flavin-binding monooxygenase-like KU228_12095 PF00106 short chain dehydrogenase KU228_12105 PF02678 Pirin KU228_12105 PF17954 Quercetinase C-terminal cupin domain KU228_12110 PF17932 Tetracyclin repressor-like, C-terminal domain KU228_12110 PF00440 Bacterial regulatory proteins, tetR family KU228_12115 PF13610 DDE domain KU228_12120 PF01636 Phosphotransferase enzyme family KU228_12130 PF13610 DDE domain KU228_12135 PF00239 Resolvase, N terminal domain KU228_12135 PF02796 Helix-turn-helix domain of resolvase KU228_12145 PF13610 DDE domain KU228_12155 PF00239 Resolvase, N terminal domain KU228_12155 PF02796 Helix-turn-helix domain of resolvase KU228_12160 PF13610 DDE domain KU228_12175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU228_12175 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_12180 PF00764 Arginosuccinate synthase KU228_12185 PF00563 EAL domain KU228_12185 PF00360 Phytochrome region KU228_12185 PF00990 Diguanylate cyclase, GGDEF domain KU228_12185 PF01590 GAF domain KU228_12190 PF01979 Amidohydrolase family KU228_12195 PF00929 Exonuclease KU228_12205 PF00593 TonB dependent receptor KU228_12205 PF07715 TonB-dependent Receptor Plug Domain KU228_12210 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_12210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU228_12215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KU228_12215 PF00005 ABC transporter KU228_12220 PF00528 Binding-protein-dependent transport system inner membrane component KU228_12220 PF12911 N-terminal TM domain of oligopeptide transport permease C KU228_12225 PF00528 Binding-protein-dependent transport system inner membrane component KU228_12230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KU228_12235 PF01464 Transglycosylase SLT domain KU228_12235 PF01476 LysM domain KU228_12235 PF01464 Transglycosylase SLT domain KU228_12235 PF01476 LysM domain KU228_12240 PF00929 Exonuclease KU228_12250 PF00293 NUDIX domain KU228_12250 PF09297 NADH pyrophosphatase zinc ribbon domain KU228_12260 PF04972 BON domain KU228_12265 PF02021 Uncharacterised protein family UPF0102 KU228_12270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KU228_12280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_12280 PF03466 LysR substrate binding domain KU228_12285 PF01810 LysE type translocator KU228_12295 PF13411 MerR HTH family regulatory protein KU228_12305 PF01494 FAD binding domain KU228_12310 PF01494 FAD binding domain KU228_12315 PF05195 Aminopeptidase P, N-terminal domain KU228_12315 PF00557 Metallopeptidase family M24 KU228_12355 PF08019 Phosphoethanolamine transferase EptA/EptB KU228_12355 PF00884 Sulfatase KU228_12400 PF08525 Opacity-associated protein A N-terminal motif KU228_12400 PF01551 Peptidase family M23 KU228_12400 PF01476 LysM domain KU228_12730 PF01812 5-formyltetrahydrofolate cyclo-ligase family KU228_12735 PF00691 OmpA family KU228_12735 PF04355 SmpA / OmlA family KU228_12740 PF05662 Coiled stalk of trimeric autotransporter adhesin KU228_12740 PF03895 YadA-like membrane anchor domain KU228_12740 PF13018 Extended Signal Peptide of Type V secretion system KU228_12740 PF05658 Head domain of trimeric autotransporter adhesin KU228_12745 PF02190 ATP-dependent protease La (LON) substrate-binding domain KU228_12745 PF05362 Lon protease (S16) C-terminal proteolytic domain KU228_12745 PF00004 ATPase family associated with various cellular activities (AAA) KU228_12750 PF02590 Predicted SPOUT methyltransferase KU228_12755 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KU228_12765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KU228_12765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KU228_12770 PF04060 Putative Fe-S cluster KU228_12775 PF00730 HhH-GPD superfamily base excision DNA repair protein KU228_12775 PF00633 Helix-hairpin-helix motif KU228_12775 PF10576 Iron-sulfur binding domain of endonuclease III KU228_12785 PF05191 Adenylate kinase, active site lid KU228_12800 PF03717 Penicillin-binding Protein dimerisation domain KU228_12800 PF00905 Penicillin binding protein transpeptidase domain KU228_12815 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU228_12820 PF01730 UreF KU228_12825 PF05194 UreE urease accessory protein, C-terminal domain KU228_12825 PF02814 UreE urease accessory protein, N-terminal domain KU228_12835 PF00547 Urease, gamma subunit KU228_12840 PF01774 UreD urease accessory protein KU228_12855 PF00463 Isocitrate lyase family KU228_12860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_12860 PF03466 LysR substrate binding domain KU228_12865 PF00571 CBS domain KU228_12865 PF01595 Cyclin M transmembrane N-terminal domain KU228_12865 PF03471 Transporter associated domain KU228_12870 PF03600 Citrate transporter KU228_12885 PF00009 Elongation factor Tu GTP binding domain KU228_12890 PF01507 Phosphoadenosine phosphosulfate reductase family KU228_12905 PF14052 Capsule assembly protein Wzi KU228_12910 PF01336 OB-fold nucleic acid binding domain KU228_12910 PF00152 tRNA synthetases class II (D, K and N) KU228_12925 PF00301 Rubredoxin KU228_12930 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_12930 PF18113 Rubredoxin binding C-terminal domain KU228_12935 PF00561 alpha/beta hydrolase fold KU228_12940 PF03466 LysR substrate binding domain KU228_12940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_12950 PF13090 Polyphosphate kinase C-terminal domain 2 KU228_12950 PF02503 Polyphosphate kinase middle domain KU228_12950 PF17941 Polyphosphate kinase C-terminal domain 1 KU228_12950 PF13089 Polyphosphate kinase N-terminal domain KU228_12955 PF00912 Transglycosylase KU228_12960 PF01694 Rhomboid family KU228_12970 PF00005 ABC transporter KU228_12975 PF13472 GDSL-like Lipase/Acylhydrolase family KU228_12980 PF00484 Carbonic anhydrase KU228_12985 PF00561 alpha/beta hydrolase fold KU228_12995 PF07715 TonB-dependent Receptor Plug Domain KU228_12995 PF00593 TonB dependent receptor KU228_13000 PF01521 Iron-sulphur cluster biosynthesis KU228_13000 PF01106 NifU-like domain KU228_13010 PF00884 Sulfatase KU228_13015 PF03781 Sulfatase-modifying factor enzyme 1 KU228_13030 PF00291 Pyridoxal-phosphate dependent enzyme KU228_13035 PF01384 Phosphate transporter family KU228_13040 PF00809 Pterin binding enzyme KU228_13040 PF02310 B12 binding domain KU228_13040 PF02607 B12 binding domain KU228_13040 PF02965 Vitamin B12 dependent methionine synthase, activation domain KU228_13040 PF02574 Homocysteine S-methyltransferase KU228_13045 PF02779 Transketolase, pyrimidine binding domain KU228_13045 PF02780 Transketolase, C-terminal domain KU228_13050 PF00456 Transketolase, thiamine diphosphate binding domain KU228_13055 PF07690 Major Facilitator Superfamily KU228_13065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_13065 PF03466 LysR substrate binding domain KU228_13075 PF01263 Aldose 1-epimerase KU228_13080 PF07690 Major Facilitator Superfamily KU228_13085 PF12833 Helix-turn-helix domain KU228_13085 PF02311 AraC-like ligand binding domain KU228_13090 PF04960 Glutaminase KU228_13095 PF01327 Polypeptide deformylase KU228_13100 PF07690 Major Facilitator Superfamily KU228_13110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU228_13110 PF00205 Thiamine pyrophosphate enzyme, central domain KU228_13110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU228_13115 PF00171 Aldehyde dehydrogenase family KU228_13120 PF03447 Homoserine dehydrogenase, NAD binding domain KU228_13120 PF01958 Domain of unknown function DUF108 KU228_13130 PF12697 Alpha/beta hydrolase family KU228_13140 PF07690 Major Facilitator Superfamily KU228_13145 PF14759 Reductase C-terminal KU228_13145 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_13150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU228_13160 PF00355 Rieske [2Fe-2S] domain KU228_13170 PF00355 Rieske [2Fe-2S] domain KU228_13175 PF01614 Bacterial transcriptional regulator KU228_13175 PF09339 IclR helix-turn-helix domain KU228_13190 PF00378 Enoyl-CoA hydratase/isomerase KU228_13200 PF00535 Glycosyl transferase family 2 KU228_13205 PF14883 Hypothetical glycosyl hydrolase family 13 KU228_13205 PF01522 Polysaccharide deacetylase KU228_13210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU228_13215 PF07152 YaeQ protein KU228_13220 PF00375 Sodium:dicarboxylate symporter family KU228_13225 PF07683 Cobalamin synthesis protein cobW C-terminal domain KU228_13225 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU228_13235 PF03061 Thioesterase superfamily KU228_13245 PF02028 BCCT, betaine/carnitine/choline family transporter KU228_13250 PF02028 BCCT, betaine/carnitine/choline family transporter KU228_13255 PF13977 BetI-type transcriptional repressor, C-terminal KU228_13255 PF00440 Bacterial regulatory proteins, tetR family KU228_13260 PF00171 Aldehyde dehydrogenase family KU228_13265 PF00732 GMC oxidoreductase KU228_13265 PF05199 GMC oxidoreductase KU228_13270 PF06039 Malate:quinone oxidoreductase (Mqo) KU228_13280 PF02574 Homocysteine S-methyltransferase KU228_13285 PF13520 Amino acid permease KU228_13310 PF01126 Heme oxygenase KU228_13320 PF04575 Protein of unknown function (DUF560) KU228_13330 PF00593 TonB dependent receptor KU228_13330 PF07715 TonB-dependent Receptor Plug Domain KU228_13340 PF04542 Sigma-70 region 2 KU228_13340 PF08281 Sigma-70, region 4 KU228_13350 PF00701 Dihydrodipicolinate synthetase family KU228_13355 PF00083 Sugar (and other) transporter KU228_13375 PF01026 TatD related DNase KU228_13390 PF07693 KAP family P-loop domain KU228_13410 PF00436 Single-strand binding protein family KU228_13465 PF13356 Arm DNA-binding domain KU228_13465 PF00589 Phage integrase family KU228_13565 PF02768 DNA polymerase III beta subunit, C-terminal domain KU228_13565 PF02767 DNA polymerase III beta subunit, central domain KU228_13565 PF00712 DNA polymerase III beta subunit, N-terminal domain KU228_13605 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KU228_13800 PF01695 IstB-like ATP binding protein KU228_13810 PF00145 C-5 cytosine-specific DNA methylase KU228_13890 PF00929 Exonuclease KU228_13965 PF07690 Major Facilitator Superfamily KU228_13970 PF13533 Biotin-lipoyl like KU228_13975 PF03061 Thioesterase superfamily KU228_13980 PF00490 Delta-aminolevulinic acid dehydratase KU228_13985 PF01266 FAD dependent oxidoreductase KU228_13990 PF08338 Domain of unknown function (DUF1731) KU228_13990 PF01370 NAD dependent epimerase/dehydratase family KU228_14010 PF00149 Calcineurin-like phosphoesterase KU228_14010 PF12320 Type 5 capsule protein repressor C-terminal domain KU228_14020 PF01168 Alanine racemase, N-terminal domain KU228_14025 PF00437 Type II/IV secretion system protein KU228_14030 PF00437 Type II/IV secretion system protein KU228_14035 PF01475 Ferric uptake regulator family KU228_14040 PF04355 SmpA / OmlA family KU228_14045 PF03658 RnfH family Ubiquitin KU228_14055 PF01814 Hemerythrin HHE cation binding domain KU228_14060 PF13230 Glutamine amidotransferases class-II KU228_14070 PF00696 Amino acid kinase family KU228_14075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU228_14075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU228_14075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU228_14075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU228_14080 PF00692 dUTPase KU228_14085 PF00580 UvrD/REP helicase N-terminal domain KU228_14085 PF13361 UvrD-like helicase C-terminal domain KU228_14090 PF00691 OmpA family KU228_14090 PF13488 Glycine zipper KU228_14095 PF01553 Acyltransferase KU228_14105 PF03775 Septum formation inhibitor MinC, C-terminal domain KU228_14110 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KU228_14115 PF03776 Septum formation topological specificity factor MinE KU228_14135 PF01810 LysE type translocator KU228_14140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KU228_14140 PF17854 FtsK alpha domain KU228_14140 PF09397 Ftsk gamma domain KU228_14140 PF01580 FtsK/SpoIIIE family KU228_14145 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU228_14150 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KU228_14155 PF04377 Arginine-tRNA-protein transferase, C terminus KU228_14155 PF04376 Arginine-tRNA-protein transferase, N terminus KU228_14160 PF00583 Acetyltransferase (GNAT) family KU228_14175 PF00009 Elongation factor Tu GTP binding domain KU228_14175 PF03144 Elongation factor Tu domain 2 KU228_14175 PF03143 Elongation factor Tu C-terminal domain KU228_14180 PF03144 Elongation factor Tu domain 2 KU228_14180 PF03764 Elongation factor G, domain IV KU228_14180 PF00679 Elongation factor G C-terminus KU228_14180 PF00009 Elongation factor Tu GTP binding domain KU228_14180 PF14492 Elongation Factor G, domain II KU228_14185 PF00177 Ribosomal protein S7p/S5e KU228_14190 PF00164 Ribosomal protein S12/S23 KU228_14200 PF00109 Beta-ketoacyl synthase, N-terminal domain KU228_14200 PF02801 Beta-ketoacyl synthase, C-terminal domain KU228_14205 PF03653 Uncharacterised protein family (UPF0093) KU228_14210 PF02678 Pirin KU228_14210 PF05726 Pirin C-terminal cupin domain KU228_14220 PF00795 Carbon-nitrogen hydrolase KU228_14220 PF02540 NAD synthase KU228_14235 PF00970 Oxidoreductase FAD-binding domain KU228_14235 PF00111 2Fe-2S iron-sulfur cluster binding domain KU228_14235 PF00175 Oxidoreductase NAD-binding domain KU228_14240 PF00171 Aldehyde dehydrogenase family KU228_14245 PF00355 Rieske [2Fe-2S] domain KU228_14245 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU228_14250 PF07859 alpha/beta hydrolase fold KU228_14255 PF02028 BCCT, betaine/carnitine/choline family transporter KU228_14260 PF00180 Isocitrate/isopropylmalate dehydrogenase KU228_14265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_14265 PF03466 LysR substrate binding domain KU228_14285 PF00037 4Fe-4S binding domain KU228_14290 PF01467 Cytidylyltransferase-like KU228_14295 PF01668 SmpB protein KU228_14300 PF03358 NADPH-dependent FMN reductase KU228_14305 PF02578 Multi-copper polyphenol oxidoreductase laccase KU228_14310 PF01479 S4 domain KU228_14310 PF00849 RNA pseudouridylate synthase KU228_14315 PF13525 Outer membrane lipoprotein KU228_14320 PF10410 DnaB-helicase binding domain of primase KU228_14320 PF08275 DNA primase catalytic core, N-terminal domain KU228_14320 PF01807 CHC2 zinc finger KU228_14320 PF08278 DNA primase DnaG DnaB-binding KU228_14325 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KU228_14325 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KU228_14325 PF01488 Shikimate / quinate 5-dehydrogenase KU228_14335 PF03550 Outer membrane lipoprotein LolB KU228_14340 PF00288 GHMP kinases N terminal domain KU228_14340 PF08544 GHMP kinases C terminal KU228_14365 PF14572 Phosphoribosyl synthetase-associated domain KU228_14365 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KU228_14370 PF01386 Ribosomal L25p family KU228_14375 PF01195 Peptidyl-tRNA hydrolase KU228_14380 PF02261 Aspartate decarboxylase KU228_14395 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KU228_14405 PF02581 Thiamine monophosphate synthase KU228_14405 PF08543 Phosphomethylpyrimidine kinase KU228_14405 PF03070 TENA/THI-4/PQQC family KU228_14410 PF01476 LysM domain KU228_14410 PF04972 BON domain KU228_14415 PF00550 Phosphopantetheine attachment site KU228_14425 PF00698 Acyl transferase domain KU228_14430 PF01783 Ribosomal L32p protein family KU228_14435 PF02620 Large ribosomal RNA subunit accumulation protein YceD KU228_14440 PF04315 Elongation factor P hydroxylase KU228_14445 PF01300 Telomere recombination KU228_14450 PF02616 Segregation and condensation protein ScpA KU228_14455 PF04079 Segregation and condensation complex subunit ScpB KU228_14460 PF00849 RNA pseudouridylate synthase KU228_14460 PF01479 S4 domain KU228_14475 PF00155 Aminotransferase class I and II KU228_14480 PF04055 Radical SAM superfamily KU228_14480 PF06968 Biotin and Thiamin Synthesis associated domain KU228_14480 PF00202 Aminotransferase class-III KU228_14485 PF12697 Alpha/beta hydrolase family KU228_14485 PF08241 Methyltransferase domain KU228_14490 PF02358 Trehalose-phosphatase KU228_14495 PF00982 Glycosyltransferase family 20 KU228_14500 PF07690 Major Facilitator Superfamily KU228_14505 PF00210 Ferritin-like domain KU228_14510 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KU228_14510 PF12826 Helix-hairpin-helix motif KU228_14510 PF01653 NAD-dependent DNA ligase adenylation domain KU228_14510 PF03120 NAD-dependent DNA ligase OB-fold domain KU228_14510 PF00533 BRCA1 C Terminus (BRCT) domain KU228_14520 PF02463 RecF/RecN/SMC N terminal domain KU228_14520 PF06470 SMC proteins Flexible Hinge Domain KU228_14530 PF01925 Sulfite exporter TauE/SafE KU228_14540 PF03309 Type III pantothenate kinase KU228_14545 PF00448 SRP54-type protein, GTPase domain KU228_14545 PF02881 SRP54-type protein, helical bundle domain KU228_14545 PF02978 Signal peptide binding domain KU228_14555 PF01207 Dihydrouridine synthase (Dus) KU228_14585 PF00692 dUTPase KU228_14600 PF01048 Phosphorylase superfamily KU228_14605 PF10609 NUBPL iron-transfer P-loop NTPase KU228_14615 PF09334 tRNA synthetases class I (M) KU228_14615 PF01588 Putative tRNA binding domain KU228_14640 PF13533 Biotin-lipoyl like KU228_14645 PF00291 Pyridoxal-phosphate dependent enzyme KU228_14660 PF05552 Conserved TM helix KU228_14675 PF00970 Oxidoreductase FAD-binding domain KU228_14675 PF00175 Oxidoreductase NAD-binding domain KU228_14680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_14680 PF03466 LysR substrate binding domain KU228_14685 PF00313 'Cold-shock' DNA-binding domain KU228_14695 PF00361 Proton-conducting membrane transporter KU228_14700 PF00361 Proton-conducting membrane transporter KU228_14705 PF00361 Proton-conducting membrane transporter KU228_14705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KU228_14710 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KU228_14715 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KU228_14720 PF12838 4Fe-4S dicluster domain KU228_14725 PF00146 NADH dehydrogenase KU228_14730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU228_14730 PF00384 Molybdopterin oxidoreductase KU228_14730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KU228_14735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KU228_14735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KU228_14735 PF10531 SLBB domain KU228_14745 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KU228_14745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KU228_14750 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KU228_14755 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KU228_14760 PF17151 Periplasmic sensor domain KU228_14760 PF00990 Diguanylate cyclase, GGDEF domain KU228_14770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_14770 PF00512 His Kinase A (phospho-acceptor) domain KU228_14770 PF00672 HAMP domain KU228_14775 PF00072 Response regulator receiver domain KU228_14775 PF00486 Transcriptional regulatory protein, C terminal KU228_14785 PF02867 Ribonucleotide reductase, barrel domain KU228_14785 PF03477 ATP cone domain KU228_14785 PF00317 Ribonucleotide reductase, all-alpha domain KU228_14795 PF00268 Ribonucleotide reductase, small chain KU228_14805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_14805 PF00512 His Kinase A (phospho-acceptor) domain KU228_14805 PF13755 Sensor N-terminal transmembrane domain KU228_14805 PF13756 Stimulus-sensing domain KU228_14805 PF00672 HAMP domain KU228_14875 PF13360 PQQ-like domain KU228_14875 PF01011 PQQ enzyme repeat KU228_14900 PF02567 Phenazine biosynthesis-like protein KU228_14920 PF01613 Flavin reductase like domain KU228_14925 PF01717 Cobalamin-independent synthase, Catalytic domain KU228_14925 PF08267 Cobalamin-independent synthase, N-terminal domain KU228_14935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_14935 PF03466 LysR substrate binding domain KU228_14940 PF01810 LysE type translocator KU228_14950 PF12833 Helix-turn-helix domain KU228_14950 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KU228_14955 PF07687 Peptidase dimerisation domain KU228_14955 PF01546 Peptidase family M20/M25/M40 KU228_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_14965 PF03466 LysR substrate binding domain KU228_14970 PF07690 Major Facilitator Superfamily KU228_14980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_14980 PF03466 LysR substrate binding domain KU228_14985 PF14537 Cytochrome c3 KU228_14985 PF00890 FAD binding domain KU228_14995 PF02515 CoA-transferase family III KU228_15000 PF07690 Major Facilitator Superfamily KU228_15005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_15005 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_15005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_15010 PF03466 LysR substrate binding domain KU228_15010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_15015 PF08240 Alcohol dehydrogenase GroES-like domain KU228_15015 PF00107 Zinc-binding dehydrogenase KU228_15020 PF00962 Adenosine/AMP deaminase KU228_15045 PF02445 Quinolinate synthetase A protein KU228_15050 PF01960 ArgJ family KU228_15055 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU228_15055 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KU228_15060 PF00893 Small Multidrug Resistance protein KU228_15070 PF05275 Copper resistance protein B precursor (CopB) KU228_15075 PF00394 Multicopper oxidase KU228_15075 PF07731 Multicopper oxidase KU228_15075 PF07732 Multicopper oxidase KU228_15090 PF00834 Ribulose-phosphate 3 epimerase family KU228_15100 PF00756 Putative esterase KU228_15110 PF04445 Putative SAM-dependent methyltransferase KU228_15115 PF00814 Glycoprotease family KU228_15120 PF00132 Bacterial transferase hexapeptide (six repeats) KU228_15125 PF00293 NUDIX domain KU228_15170 PF00425 chorismate binding enzyme KU228_15170 PF04715 Anthranilate synthase component I, N terminal region KU228_15175 PF00155 Aminotransferase class I and II KU228_15180 PF00815 Histidinol dehydrogenase KU228_15185 PF01634 ATP phosphoribosyltransferase KU228_15190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KU228_15195 PF01722 BolA-like protein KU228_15200 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KU228_15205 PF04552 Sigma-54, DNA binding domain KU228_15205 PF04963 Sigma-54 factor, core binding domain KU228_15205 PF00309 Sigma-54 factor, Activator interacting domain (AID) KU228_15250 PF00795 Carbon-nitrogen hydrolase KU228_15260 PF01047 MarR family KU228_15265 PF02566 OsmC-like protein KU228_15270 PF00437 Type II/IV secretion system protein KU228_15300 PF00476 DNA polymerase family A KU228_15300 PF01612 3'-5' exonuclease KU228_15300 PF01367 5'-3' exonuclease, C-terminal SAM fold KU228_15300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KU228_15305 PF02325 YGGT family KU228_15310 PF14748 Pyrroline-5-carboxylate reductase dimerisation KU228_15310 PF03807 NADP oxidoreductase coenzyme F420-dependent KU228_15315 PF09179 TilS substrate binding domain KU228_15315 PF11734 TilS substrate C-terminal domain KU228_15315 PF01171 PP-loop family KU228_15320 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KU228_15325 PF02541 Ppx/GppA phosphatase family KU228_15330 PF00085 Thioredoxin KU228_15335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU228_15335 PF07498 Rho termination factor, N-terminal domain KU228_15335 PF07497 Rho termination factor, RNA-binding domain KU228_15350 PF00216 Bacterial DNA-binding protein KU228_15355 PF03483 B3/4 domain KU228_15355 PF01588 Putative tRNA binding domain KU228_15355 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KU228_15355 PF03147 Ferredoxin-fold anticodon binding domain KU228_15355 PF03484 tRNA synthetase B5 domain KU228_15360 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KU228_15360 PF01409 tRNA synthetases class II core domain (F) KU228_15380 PF00453 Ribosomal protein L20 KU228_15385 PF01632 Ribosomal protein L35 KU228_15390 PF07690 Major Facilitator Superfamily KU228_15395 PF09335 SNARE associated Golgi protein KU228_15400 PF00043 Glutathione S-transferase, C-terminal domain KU228_15400 PF02798 Glutathione S-transferase, N-terminal domain KU228_15405 PF00707 Translation initiation factor IF-3, C-terminal domain KU228_15405 PF05198 Translation initiation factor IF-3, N-terminal domain KU228_15410 PF03129 Anticodon binding domain KU228_15410 PF02824 TGS domain KU228_15410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU228_15410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KU228_15415 PF00501 AMP-binding enzyme KU228_15415 PF13193 AMP-binding enzyme C-terminal domain KU228_15420 PF04751 Protein of unknown function (DUF615) KU228_15425 PF00381 PTS HPr component phosphorylation site KU228_15430 PF03668 P-loop ATPase protein family KU228_15435 PF02569 Pantoate-beta-alanine ligase KU228_15440 PF02548 Ketopantoate hydroxymethyltransferase KU228_15445 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KU228_15450 PF01743 Poly A polymerase head domain KU228_15450 PF12626 Polymerase A arginine-rich C-terminus KU228_15450 PF12627 Probable RNA and SrmB- binding site of polymerase A KU228_15460 PF03819 MazG nucleotide pyrophosphohydrolase domain KU228_15470 PF02824 TGS domain KU228_15470 PF13291 ACT domain KU228_15470 PF04607 Region found in RelA / SpoT proteins KU228_15475 PF05958 tRNA (Uracil-5-)-methyltransferase KU228_15485 PF00291 Pyridoxal-phosphate dependent enzyme KU228_15490 PF00072 Response regulator receiver domain KU228_15490 PF01627 Hpt domain KU228_15490 PF00512 His Kinase A (phospho-acceptor) domain KU228_15490 PF00672 HAMP domain KU228_15490 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KU228_15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_15495 PF00378 Enoyl-CoA hydratase/isomerase KU228_15500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU228_15500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU228_15505 PF01261 Xylose isomerase-like TIM barrel KU228_15515 PF00106 short chain dehydrogenase KU228_15520 PF02233 NAD(P) transhydrogenase beta subunit KU228_15525 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KU228_15530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KU228_15530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KU228_15535 PF00892 EamA-like transporter family KU228_15545 PF07690 Major Facilitator Superfamily KU228_15550 PF01207 Dihydrouridine synthase (Dus) KU228_15560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_15560 PF03466 LysR substrate binding domain KU228_15570 PF00899 ThiF family KU228_15580 PF00694 Aconitase C-terminal domain KU228_15580 PF00330 Aconitase family (aconitate hydratase) KU228_15585 PF01026 TatD related DNase KU228_15600 PF03144 Elongation factor Tu domain 2 KU228_15600 PF16658 Class II release factor RF3, C-terminal domain KU228_15600 PF00009 Elongation factor Tu GTP binding domain KU228_15620 PF03707 Bacterial signalling protein N terminal repeat KU228_15620 PF00990 Diguanylate cyclase, GGDEF domain KU228_15620 PF00563 EAL domain KU228_15625 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KU228_15625 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KU228_15630 PF10369 Small subunit of acetolactate synthase KU228_15635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU228_15635 PF00205 Thiamine pyrophosphate enzyme, central domain KU228_15635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU228_15645 PF09334 tRNA synthetases class I (M) KU228_15645 PF08264 Anticodon-binding domain of tRNA KU228_15645 PF00133 tRNA synthetases class I (I, L, M and V) KU228_15645 PF13603 Leucyl-tRNA synthetase, Domain 2 KU228_15660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU228_15665 PF02687 FtsX-like permease family KU228_15665 PF12704 MacB-like periplasmic core domain KU228_15665 PF00005 ABC transporter KU228_15670 PF02321 Outer membrane efflux protein KU228_15685 PF00929 Exonuclease KU228_15690 PF03193 RsgA GTPase KU228_15700 PF00462 Glutaredoxin KU228_15705 PF02556 Preprotein translocase subunit SecB KU228_15720 PF00109 Beta-ketoacyl synthase, N-terminal domain KU228_15720 PF02801 Beta-ketoacyl synthase, C-terminal domain KU228_15735 PF00109 Beta-ketoacyl synthase, N-terminal domain KU228_15735 PF02801 Beta-ketoacyl synthase, C-terminal domain KU228_15745 PF04820 Tryptophan halogenase KU228_15765 PF00221 Aromatic amino acid lyase KU228_15780 PF00501 AMP-binding enzyme KU228_15780 PF13193 AMP-binding enzyme C-terminal domain KU228_15790 PF00550 Phosphopantetheine attachment site KU228_15795 PF00550 Phosphopantetheine attachment site KU228_15810 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KU228_15810 PF01926 50S ribosome-binding GTPase KU228_15815 PF13360 PQQ-like domain KU228_15825 PF13393 Histidyl-tRNA synthetase KU228_15825 PF03129 Anticodon binding domain KU228_15830 PF04551 GcpE protein KU228_15835 PF13464 Domain of unknown function (DUF4115) KU228_15845 PF04055 Radical SAM superfamily KU228_15850 PF00334 Nucleoside diphosphate kinase KU228_15855 PF04384 Iron-sulphur cluster assembly KU228_15860 PF01569 PAP2 superfamily KU228_15865 PF00534 Glycosyl transferases group 1 KU228_15865 PF13439 Glycosyltransferase Family 4 KU228_15870 PF03572 Peptidase family S41 KU228_15870 PF00595 PDZ domain KU228_15870 PF11818 C-terminal domain of tail specific protease (DUF3340) KU228_15870 PF17804 Tail specific protease N-terminal domain KU228_15875 PF00933 Glycosyl hydrolase family 3 N terminal domain KU228_15885 PF00561 alpha/beta hydrolase fold KU228_15890 PF00171 Aldehyde dehydrogenase family KU228_15895 PF00171 Aldehyde dehydrogenase family KU228_15900 PF01202 Shikimate kinase KU228_15905 PF02447 GntP family permease KU228_15910 PF01081 KDPG and KHG aldolase KU228_15915 PF00920 Dehydratase family KU228_15925 PF00871 Acetokinase family KU228_15930 PF01515 Phosphate acetyl/butaryl transferase KU228_15930 PF07085 DRTGG domain KU228_15935 PF05683 Fumarase C-terminus KU228_15935 PF05681 Fumarate hydratase (Fumerase) KU228_15950 PF10431 C-terminal, D2-small domain, of ClpB protein KU228_15950 PF07724 AAA domain (Cdc48 subfamily) KU228_15950 PF06689 ClpX C4-type zinc finger KU228_15955 PF00574 Clp protease KU228_15960 PF05697 Bacterial trigger factor protein (TF) KU228_15960 PF05698 Bacterial trigger factor protein (TF) C-terminus KU228_15960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU228_15965 PF07715 TonB-dependent Receptor Plug Domain KU228_15965 PF00593 TonB dependent receptor KU228_15970 PF13640 2OG-Fe(II) oxygenase superfamily KU228_15970 PF18331 PKHD-type hydroxylase C-terminal domain KU228_15975 PF00682 HMGL-like KU228_15975 PF08502 LeuA allosteric (dimerisation) domain KU228_15980 PF00561 alpha/beta hydrolase fold KU228_15985 PF00561 alpha/beta hydrolase fold KU228_15985 PF07021 Methionine biosynthesis protein MetW KU228_15995 PF01725 Ham1 family KU228_16005 PF02416 mttA/Hcf106 family KU228_16010 PF02416 mttA/Hcf106 family KU228_16015 PF00902 Sec-independent protein translocase protein (TatC) KU228_16035 PF01790 Prolipoprotein diacylglyceryl transferase KU228_16050 PF00303 Thymidylate synthase KU228_16055 PF00186 Dihydrofolate reductase KU228_16065 PF01625 Peptide methionine sulfoxide reductase KU228_16075 PF01618 MotA/TolQ/ExbB proton channel family KU228_16085 PF00551 Formyl transferase KU228_16085 PF01842 ACT domain KU228_16095 PF00171 Aldehyde dehydrogenase family KU228_16100 PF00830 Ribosomal L28 family KU228_16105 PF00471 Ribosomal protein L33 KU228_16110 PF00999 Sodium/hydrogen exchanger family KU228_16110 PF02254 TrkA-N domain KU228_16130 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KU228_16135 PF00580 UvrD/REP helicase N-terminal domain KU228_16135 PF13361 UvrD-like helicase C-terminal domain KU228_16150 PF01751 Toprim domain KU228_16150 PF01396 Topoisomerase DNA binding C4 zinc finger KU228_16150 PF01131 DNA topoisomerase KU228_16150 PF08272 Topoisomerase I zinc-ribbon-like KU228_16160 PF01638 HxlR-like helix-turn-helix KU228_16165 PF00107 Zinc-binding dehydrogenase KU228_16165 PF08240 Alcohol dehydrogenase GroES-like domain KU228_16170 PF04102 SlyX KU228_16175 PF00005 ABC transporter KU228_16175 PF16326 ABC transporter C-terminal domain KU228_16175 PF12848 ABC transporter KU228_16180 PF01810 LysE type translocator KU228_16185 PF03279 Bacterial lipid A biosynthesis acyltransferase KU228_16195 PF00375 Sodium:dicarboxylate symporter family KU228_16205 PF01118 Semialdehyde dehydrogenase, NAD binding domain KU228_16205 PF02774 Semialdehyde dehydrogenase, dimerisation domain KU228_16225 PF01416 tRNA pseudouridine synthase KU228_16235 PF01176 Translation initiation factor 1A / IF-1 KU228_16250 PF00180 Isocitrate/isopropylmalate dehydrogenase KU228_16260 PF00694 Aconitase C-terminal domain KU228_16265 PF00330 Aconitase family (aconitate hydratase) KU228_16275 PF03466 LysR substrate binding domain KU228_16275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_16295 PF00293 NUDIX domain KU228_16300 PF02896 PEP-utilising enzyme, TIM barrel domain KU228_16300 PF01590 GAF domain KU228_16300 PF00391 PEP-utilising enzyme, mobile domain KU228_16300 PF05524 PEP-utilising enzyme, N-terminal KU228_16305 PF00141 Peroxidase KU228_16310 PF12706 Beta-lactamase superfamily domain KU228_16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_16315 PF03466 LysR substrate binding domain KU228_16325 PF02798 Glutathione S-transferase, N-terminal domain KU228_16330 PF08279 HTH domain KU228_16330 PF13280 WYL domain KU228_16335 PF13419 Haloacid dehalogenase-like hydrolase KU228_16340 PF01479 S4 domain KU228_16340 PF00849 RNA pseudouridylate synthase KU228_16345 PF12111 Polyribonucleotide phosphorylase C terminal KU228_16345 PF10150 Ribonuclease E/G family KU228_16345 PF00575 S1 RNA binding domain KU228_16350 PF00501 AMP-binding enzyme KU228_16350 PF13193 AMP-binding enzyme C-terminal domain KU228_16365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU228_16365 PF03466 LysR substrate binding domain KU228_16370 PF00106 short chain dehydrogenase KU228_16375 PF06969 HemN C-terminal domain KU228_16375 PF04055 Radical SAM superfamily KU228_16385 PF01554 MatE KU228_16390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_16390 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_16390 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU228_16395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_16395 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU228_16400 PF03109 ABC1 family KU228_16405 PF01197 Ribosomal protein L31 KU228_16420 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KU228_16440 PF03884 DNA gyrase inhibitor YacG KU228_16445 PF00753 Metallo-beta-lactamase superfamily KU228_16450 PF00762 Ferrochelatase KU228_16460 PF01177 Asp/Glu/Hydantoin racemase KU228_16475 PF01206 Sulfurtransferase TusA KU228_16480 PF03471 Transporter associated domain KU228_16480 PF00571 CBS domain KU228_16485 PF00795 Carbon-nitrogen hydrolase KU228_16490 PF01588 Putative tRNA binding domain KU228_16500 PF07963 Prokaryotic N-terminal methylation motif KU228_16500 PF08334 Type II secretion system (T2SS), protein G KU228_16505 PF00482 Type II secretion system (T2SS), protein F KU228_16510 PF17764 3′ DNA-binding domain (3′BD) KU228_16510 PF00271 Helicase conserved C-terminal domain KU228_16510 PF00270 DEAD/DEAH box helicase KU228_16510 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KU228_16510 PF18074 Primosomal protein N C-terminal domain KU228_16515 PF00999 Sodium/hydrogen exchanger family KU228_16515 PF02254 TrkA-N domain KU228_16520 PF01430 Hsp33 protein KU228_16530 PF01556 DnaJ C terminal domain KU228_16530 PF00226 DnaJ domain KU228_16540 PF01544 CorA-like Mg2+ transporter protein KU228_16545 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KU228_16545 PF00575 S1 RNA binding domain KU228_16545 PF00013 KH domain KU228_16545 PF03725 3' exoribonuclease family, domain 2 KU228_16545 PF01138 3' exoribonuclease family, domain 1 KU228_16550 PF00312 Ribosomal protein S15 KU228_16555 PF00144 Beta-lactamase KU228_16560 PF13538 UvrD-like helicase C-terminal domain KU228_16565 PF12705 PD-(D/E)XK nuclease superfamily KU228_16565 PF00580 UvrD/REP helicase N-terminal domain KU228_16565 PF13361 UvrD-like helicase C-terminal domain KU228_16570 PF17946 RecC C-terminal domain KU228_16580 PF03976 Polyphosphate kinase 2 (PPK2) KU228_16590 PF01209 ubiE/COQ5 methyltransferase family KU228_16600 PF03109 ABC1 family KU228_16605 PF01494 FAD binding domain KU228_16610 PF01502 Phosphoribosyl-AMP cyclohydrolase KU228_16625 PF13244 Domain of unknown function (DUF4040) KU228_16625 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KU228_16625 PF00361 Proton-conducting membrane transporter KU228_16625 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KU228_16630 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KU228_16635 PF00361 Proton-conducting membrane transporter KU228_16640 PF01899 Na+/H+ ion antiporter subunit KU228_16645 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KU228_16650 PF03334 Na+/H+ antiporter subunit KU228_16655 PF02033 Ribosome-binding factor A KU228_16660 PF00009 Elongation factor Tu GTP binding domain KU228_16660 PF11987 Translation-initiation factor 2 KU228_16660 PF08364 Bacterial translation initiation factor IF-2 associated region KU228_16660 PF04760 Translation initiation factor IF-2, N-terminal region KU228_16665 PF13184 NusA-like KH domain KU228_16665 PF08529 NusA N-terminal domain KU228_16665 PF00575 S1 RNA binding domain KU228_16670 PF02576 RimP N-terminal domain KU228_16670 PF17384 RimP C-terminal SH3 domain KU228_16690 PF03840 Preprotein translocase SecG subunit KU228_16695 PF00121 Triosephosphate isomerase KU228_16700 PF00437 Type II/IV secretion system protein KU228_16700 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KU228_16705 PF00482 Type II secretion system (T2SS), protein F KU228_16710 PF06750 Bacterial Peptidase A24 N-terminal domain KU228_16710 PF01478 Type IV leader peptidase family KU228_16715 PF01121 Dephospho-CoA kinase KU228_16725 PF08032 RNA 2'-O ribose methyltransferase substrate binding KU228_16725 PF00588 SpoU rRNA Methylase family KU228_16730 PF06865 Pyrimidine/purine nucleoside phosphorylase KU228_16740 PF02463 RecF/RecN/SMC N terminal domain KU228_16745 PF02622 Uncharacterized ACR, COG1678 KU228_16750 PF03652 Holliday junction resolvase KU228_16755 PF13533 Biotin-lipoyl like KU228_16780 PF02805 Metal binding domain of Ada KU228_16780 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU228_16780 PF12833 Helix-turn-helix domain KU228_16780 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KU228_16785 PF01066 CDP-alcohol phosphatidyltransferase KU228_16795 PF08459 UvrC Helix-hairpin-helix N-terminal KU228_16795 PF01541 GIY-YIG catalytic domain KU228_16795 PF02151 UvrB/uvrC motif KU228_16815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU228_16815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU228_16815 PF00378 Enoyl-CoA hydratase/isomerase KU228_16820 PF02803 Thiolase, C-terminal domain KU228_16820 PF00108 Thiolase, N-terminal domain KU228_16840 PF00376 MerR family regulatory protein KU228_16840 PF09278 MerR, DNA binding KU228_16850 PF01323 DSBA-like thioredoxin domain KU228_16865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_16865 PF00183 Hsp90 protein KU228_16880 PF03553 Na+/H+ antiporter family KU228_16880 PF13726 Na+-H+ antiporter family KU228_16885 PF00561 alpha/beta hydrolase fold KU228_16905 PF04997 RNA polymerase Rpb1, domain 1 KU228_16905 PF00623 RNA polymerase Rpb1, domain 2 KU228_16905 PF04998 RNA polymerase Rpb1, domain 5 KU228_16905 PF04983 RNA polymerase Rpb1, domain 3 KU228_16905 PF05000 RNA polymerase Rpb1, domain 4 KU228_16910 PF04561 RNA polymerase Rpb2, domain 2 KU228_16910 PF04565 RNA polymerase Rpb2, domain 3 KU228_16910 PF10385 RNA polymerase beta subunit external 1 domain KU228_16910 PF00562 RNA polymerase Rpb2, domain 6 KU228_16910 PF04560 RNA polymerase Rpb2, domain 7 KU228_16910 PF04563 RNA polymerase beta subunit KU228_16915 PF00542 Ribosomal protein L7/L12 C-terminal domain KU228_16915 PF16320 Ribosomal protein L7/L12 dimerisation domain KU228_16920 PF00466 Ribosomal protein L10 KU228_16925 PF00687 Ribosomal protein L1p/L10e family KU228_16930 PF00298 Ribosomal protein L11, RNA binding domain KU228_16930 PF03946 Ribosomal protein L11, N-terminal domain KU228_16935 PF02357 Transcription termination factor nusG KU228_16935 PF00467 KOW motif KU228_16940 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KU228_16950 PF03143 Elongation factor Tu C-terminal domain KU228_16950 PF03144 Elongation factor Tu domain 2 KU228_16950 PF00009 Elongation factor Tu GTP binding domain KU228_16975 PF00425 chorismate binding enzyme KU228_16975 PF04715 Anthranilate synthase component I, N terminal region KU228_16980 PF13419 Haloacid dehalogenase-like hydrolase KU228_16985 PF12401 Protein of unknown function (DUF2662) KU228_16985 PF00498 FHA domain KU228_16990 PF00263 Bacterial type II and III secretion system protein KU228_16990 PF03958 Bacterial type II/III secretion system short domain KU228_17005 PF00816 H-NS histone family KU228_17030 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KU228_17030 PF03900 Porphobilinogen deaminase, C-terminal domain KU228_17035 PF04397 LytTr DNA-binding domain KU228_17035 PF00072 Response regulator receiver domain KU228_17040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_17040 PF07694 5TMR of 5TMR-LYT KU228_17040 PF06580 Histidine kinase KU228_17045 PF14698 Argininosuccinate lyase C-terminal KU228_17045 PF00206 Lyase KU228_17050 PF04362 Bacterial Fe(2+) trafficking KU228_17055 PF01895 PhoU domain KU228_17060 PF02321 Outer membrane efflux protein KU228_17065 PF00892 EamA-like transporter family KU228_17080 PF13667 ThiC-associated domain KU228_17080 PF01964 Radical SAM ThiC family KU228_17085 PF00293 NUDIX domain KU228_17090 PF00149 Calcineurin-like phosphoesterase KU228_17095 PF01258 Prokaryotic dksA/traR C4-type zinc finger KU228_17100 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU228_17105 PF01098 Cell cycle protein KU228_17110 PF02875 Mur ligase family, glutamate ligase domain KU228_17110 PF08245 Mur ligase middle domain KU228_17120 PF07664 Ferrous iron transport protein B C terminus KU228_17120 PF07670 Nucleoside recognition KU228_17120 PF02421 Ferrous iron transport protein B KU228_17130 PF02899 Phage integrase, N-terminal SAM-like domain KU228_17130 PF00589 Phage integrase family KU228_17135 PF10411 Disulfide bond isomerase protein N-terminus KU228_17135 PF13098 Thioredoxin-like domain KU228_17140 PF01842 ACT domain KU228_17140 PF00742 Homoserine dehydrogenase KU228_17140 PF03447 Homoserine dehydrogenase, NAD binding domain KU228_17145 PF00291 Pyridoxal-phosphate dependent enzyme KU228_17150 PF00768 D-alanyl-D-alanine carboxypeptidase KU228_17155 PF00196 Bacterial regulatory proteins, luxR family KU228_17155 PF00072 Response regulator receiver domain KU228_17160 PF00512 His Kinase A (phospho-acceptor) domain KU228_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU228_17165 PF00072 Response regulator receiver domain KU228_17165 PF00158 Sigma-54 interaction domain KU228_17165 PF02954 Bacterial regulatory protein, Fis family KU228_17170 PF03572 Peptidase family S41 KU228_17170 PF00595 PDZ domain KU228_17175 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KU228_17175 PF01676 Metalloenzyme superfamily KU228_17180 PF03739 Lipopolysaccharide export system permease LptF/LptG KU228_17190 PF00883 Cytosol aminopeptidase family, catalytic domain KU228_17190 PF02789 Cytosol aminopeptidase family, N-terminal domain KU228_17210 PF00677 Lumazine binding domain KU228_17220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KU228_17220 PF01872 RibD C-terminal domain KU228_17225 PF03477 ATP cone domain KU228_17230 PF00909 Ammonium Transporter Family KU228_17235 PF00543 Nitrogen regulatory protein P-II KU228_17245 PF13335 Magnesium chelatase, subunit ChlI C-terminal KU228_17245 PF01078 Magnesium chelatase, subunit ChlI KU228_17255 PF01636 Phosphotransferase enzyme family KU228_17260 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase KU228_17280 PF02909 Tetracyclin repressor-like, C-terminal domain KU228_17280 PF00440 Bacterial regulatory proteins, tetR family KU228_17285 PF07690 Major Facilitator Superfamily KU228_17300 PF00905 Penicillin binding protein transpeptidase domain KU228_17325 PF00916 Sulfate permease family KU228_17325 PF01740 STAS domain KU228_17330 PF00582 Universal stress protein family KU228_17360 PF00665 Integrase core domain KU228_17370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU228_17370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU228_17370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU228_17370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU228_17375 PF00809 Pterin binding enzyme KU228_17390 PF00665 Integrase core domain KU228_17415 PF02899 Phage integrase, N-terminal SAM-like domain KU228_17415 PF00589 Phage integrase family KU228_17450 PF00905 Penicillin binding protein transpeptidase domain KU228_17475 PF01740 STAS domain KU228_17475 PF00916 Sulfate permease family KU228_17480 PF00582 Universal stress protein family KU228_17500 PF00665 Integrase core domain KU228_17510 PF13335 Magnesium chelatase, subunit ChlI C-terminal KU228_17510 PF01078 Magnesium chelatase, subunit ChlI KU228_17525 PF00701 Dihydrodipicolinate synthetase family KU228_17535 PF03573 outer membrane porin, OprD family KU228_17540 PF00719 Inorganic pyrophosphatase KU228_17555 PF00501 AMP-binding enzyme KU228_17555 PF13193 AMP-binding enzyme C-terminal domain KU228_17560 PF03989 DNA gyrase C-terminal domain, beta-propeller KU228_17560 PF00521 DNA gyrase/topoisomerase IV, subunit A KU228_17565 PF07690 Major Facilitator Superfamily KU228_17570 PF03458 UPF0126 domain KU228_17575 PF02810 SEC-C motif KU228_17580 PF03471 Transporter associated domain KU228_17580 PF03741 Integral membrane protein TerC family KU228_17585 PF03641 Possible lysine decarboxylase KU228_17590 PF07690 Major Facilitator Superfamily KU228_17600 PF00817 impB/mucB/samB family KU228_17600 PF11799 impB/mucB/samB family C-terminal domain KU228_17600 PF11798 IMS family HHH motif KU228_17615 PF11842 Domain of unknown function (DUF3362) KU228_17615 PF04055 Radical SAM superfamily KU228_17615 PF08497 Radical SAM N-terminal KU228_17635 PF03358 NADPH-dependent FMN reductase KU228_17645 PF00291 Pyridoxal-phosphate dependent enzyme KU228_17680 PF00440 Bacterial regulatory proteins, tetR family KU228_17705 PF01327 Polypeptide deformylase KU228_17715 PF02481 DNA recombination-mediator protein A KU228_17715 PF17782 DprA winged helix domain KU228_17720 PF01300 Telomere recombination KU228_17725 PF00892 EamA-like transporter family KU228_17730 PF00440 Bacterial regulatory proteins, tetR family KU228_17735 PF07690 Major Facilitator Superfamily KU228_17745 PF00255 Glutathione peroxidase KU228_17755 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KU228_17760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU228_17760 PF02874 ATP synthase alpha/beta family, beta-barrel domain KU228_17765 PF00231 ATP synthase KU228_17770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU228_17770 PF00306 ATP synthase alpha/beta chain, C terminal domain KU228_17770 PF02874 ATP synthase alpha/beta family, beta-barrel domain KU228_17775 PF00213 ATP synthase delta (OSCP) subunit KU228_17780 PF00430 ATP synthase B/B' CF(0) KU228_17785 PF00137 ATP synthase subunit C KU228_17790 PF00119 ATP synthase A chain KU228_17810 PF00005 ABC transporter KU228_17815 PF00950 ABC 3 transport family KU228_17820 PF01810 LysE type translocator KU228_17825 PF04261 Dyp-type peroxidase family KU228_17835 PF00390 Malic enzyme, N-terminal domain KU228_17835 PF03949 Malic enzyme, NAD binding domain KU228_17840 PF03485 Arginyl tRNA synthetase N terminal domain KU228_17840 PF05746 DALR anticodon binding domain KU228_17840 PF00750 tRNA synthetases class I (R) KU228_17860 PF02678 Pirin KU228_17860 PF05726 Pirin C-terminal cupin domain KU228_17870 PF03551 Transcriptional regulator PadR-like family KU228_17875 PF01909 Nucleotidyltransferase domain KU228_17875 PF13427 Domain of unknown function (DUF4111) KU228_17880 PF00117 Glutamine amidotransferase class-I KU228_17880 PF00958 GMP synthase C terminal domain KU228_17880 PF02540 NAD synthase KU228_17885 PF04286 Protein of unknown function (DUF445) KU228_17890 PF07681 DoxX KU228_17895 PF09335 SNARE associated Golgi protein KU228_17910 PF13614 AAA domain KU228_17920 PF01722 BolA-like protein KU228_17935 PF01648 4'-phosphopantetheinyl transferase superfamily KU228_17940 PF12697 Alpha/beta hydrolase family KU228_17960 PF16197 Ketoacyl-synthetase C-terminal extension KU228_17960 PF00109 Beta-ketoacyl synthase, N-terminal domain KU228_17960 PF02801 Beta-ketoacyl synthase, C-terminal domain KU228_17960 PF08242 Methyltransferase domain KU228_17960 PF00550 Phosphopantetheine attachment site KU228_17960 PF14765 Polyketide synthase dehydratase KU228_17960 PF00975 Thioesterase domain KU228_17965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_17965 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_17965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_17970 PF00501 AMP-binding enzyme KU228_17975 PF00196 Bacterial regulatory proteins, luxR family KU228_17975 PF03472 Autoinducer binding domain KU228_17985 PF00765 Autoinducer synthase KU228_17990 PF07690 Major Facilitator Superfamily KU228_17990 PF00083 Sugar (and other) transporter KU228_17995 PF00378 Enoyl-CoA hydratase/isomerase KU228_18000 PF00378 Enoyl-CoA hydratase/isomerase KU228_18005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU228_18005 PF02770 Acyl-CoA dehydrogenase, middle domain KU228_18005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU228_18010 PF13193 AMP-binding enzyme C-terminal domain KU228_18010 PF00501 AMP-binding enzyme KU228_18015 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU228_18015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU228_18020 PF00171 Aldehyde dehydrogenase family KU228_18030 PF00324 Amino acid permease KU228_18035 PF00324 Amino acid permease KU228_18040 PF01042 Endoribonuclease L-PSP KU228_18045 PF00842 Alanine racemase, C-terminal domain KU228_18045 PF01168 Alanine racemase, N-terminal domain KU228_18050 PF01266 FAD dependent oxidoreductase KU228_18055 PF01037 Lrp/AsnC ligand binding domain KU228_18065 PF00593 TonB dependent receptor KU228_18065 PF07715 TonB-dependent Receptor Plug Domain KU228_18080 PF00849 RNA pseudouridylate synthase KU228_18095 PF00440 Bacterial regulatory proteins, tetR family KU228_18095 PF08361 MAATS-type transcriptional repressor, C-terminal region KU228_18105 PF00109 Beta-ketoacyl synthase, N-terminal domain KU228_18105 PF02801 Beta-ketoacyl synthase, C-terminal domain KU228_18140 PF00694 Aconitase C-terminal domain KU228_18140 PF00330 Aconitase family (aconitate hydratase) KU228_18145 PF00285 Citrate synthase, C-terminal domain KU228_18155 PF00392 Bacterial regulatory proteins, gntR family KU228_18155 PF07729 FCD domain KU228_18165 PF00155 Aminotransferase class I and II KU228_18170 PF01565 FAD binding domain KU228_18170 PF09330 D-lactate dehydrogenase, membrane binding KU228_18175 PF01070 FMN-dependent dehydrogenase KU228_18180 PF07729 FCD domain KU228_18180 PF00392 Bacterial regulatory proteins, gntR family KU228_18185 PF02652 L-lactate permease KU228_18190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU228_18190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU228_18190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU228_18190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU228_18195 PF16363 GDP-mannose 4,6 dehydratase KU228_18200 PF00342 Phosphoglucose isomerase KU228_18205 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KU228_18205 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KU228_18205 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KU228_18210 PF00483 Nucleotidyl transferase KU228_18215 PF02397 Bacterial sugar transferase KU228_18220 PF00535 Glycosyl transferase family 2 KU228_18250 PF08666 SAF domain KU228_18250 PF03102 NeuB family KU228_18265 PF02348 Cytidylyltransferase KU228_18270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KU228_18275 PF02719 Polysaccharide biosynthesis protein KU228_18280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KU228_18280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KU228_18280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KU228_18285 PF02563 Polysaccharide biosynthesis/export protein KU228_18285 PF10531 SLBB domain KU228_18285 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KU228_18290 PF01451 Low molecular weight phosphotyrosine protein phosphatase KU228_18295 PF02706 Chain length determinant protein KU228_18295 PF13807 G-rich domain on putative tyrosine kinase KU228_18295 PF13614 AAA domain KU228_18300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KU228_18300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU228_18305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU228_18305 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KU228_18310 PF03023 Lipid II flippase MurJ KU228_18315 PF01510 N-acetylmuramoyl-L-alanine amidase KU228_18320 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KU228_18320 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KU228_18335 PF01138 3' exoribonuclease family, domain 1 KU228_18335 PF03725 3' exoribonuclease family, domain 2 KU228_18340 PF00487 Fatty acid desaturase KU228_18345 PF00175 Oxidoreductase NAD-binding domain KU228_18350 PF00440 Bacterial regulatory proteins, tetR family KU228_18355 PF08360 QacR-like protein, C-terminal region KU228_18355 PF00440 Bacterial regulatory proteins, tetR family KU228_18360 PF01323 DSBA-like thioredoxin domain KU228_18370 PF13419 Haloacid dehalogenase-like hydrolase KU228_18375 PF00106 short chain dehydrogenase KU228_18390 PF00583 Acetyltransferase (GNAT) family KU228_18390 PF00696 Amino acid kinase family KU228_18395 PF09084 NMT1/THI5 like KU228_18400 PF09084 NMT1/THI5 like KU228_18405 PF00296 Luciferase-like monooxygenase KU228_18410 PF00528 Binding-protein-dependent transport system inner membrane component KU228_18415 PF00005 ABC transporter KU228_18420 PF00440 Bacterial regulatory proteins, tetR family KU228_18420 PF08362 YcdC-like protein, C-terminal region KU228_18425 PF01048 Phosphorylase superfamily KU228_18435 PF01687 Riboflavin kinase KU228_18435 PF06574 FAD synthetase KU228_18440 PF00133 tRNA synthetases class I (I, L, M and V) KU228_18440 PF06827 Zinc finger found in FPG and IleRS KU228_18440 PF08264 Anticodon-binding domain of tRNA KU228_18445 PF01252 Signal peptidase (SPase) II KU228_18450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU228_18490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KU228_18495 PF07859 alpha/beta hydrolase fold KU228_18520 PF01025 GrpE KU228_18525 PF00012 Hsp70 protein KU228_18545 PF13406 Transglycosylase SLT domain KU228_18550 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KU228_18550 PF02222 ATP-grasp domain KU228_18555 PF00731 AIR carboxylase KU228_18565 PF08245 Mur ligase middle domain KU228_18565 PF02875 Mur ligase family, glutamate ligase domain KU228_18565 PF01225 Mur ligase family, catalytic domain KU228_18575 PF01569 PAP2 superfamily KU228_18580 PF03741 Integral membrane protein TerC family KU228_18590 PF03738 Glutathionylspermidine synthase preATP-grasp KU228_18595 PF00355 Rieske [2Fe-2S] domain KU228_18600 PF01979 Amidohydrolase family KU228_18605 PF00156 Phosphoribosyl transferase domain KU228_18615 PF13098 Thioredoxin-like domain KU228_18615 PF10411 Disulfide bond isomerase protein N-terminus KU228_18620 PF01545 Cation efflux family KU228_18620 PF16916 Dimerisation domain of Zinc Transporter KU228_18625 PF02583 Metal-sensitive transcriptional repressor KU228_18630 PF01926 50S ribosome-binding GTPase KU228_18630 PF10396 GTP-binding protein TrmE N-terminus KU228_18630 PF12631 MnmE helical domain KU228_18635 PF02096 60Kd inner membrane protein KU228_18635 PF14849 YidC periplasmic domain KU228_18640 PF01809 Putative membrane protein insertion efficiency factor KU228_18645 PF00825 Ribonuclease P KU228_18650 PF00468 Ribosomal protein L34 KU228_18705 PF00565 Staphylococcal nuclease homologue KU228_18710 PF00816 H-NS histone family KU228_18770 PF13614 AAA domain KU228_18775 PF17762 HTH domain found in ParB protein KU228_18775 PF02195 ParB-like nuclease domain KU228_18790 PF05816 Toxic anion resistance protein (TelA) KU228_18920 PF18340 DNA relaxase TraI 2B/2B-like domain KU228_18920 PF18272 single-stranded DNA binding TraI N-terminal subdomain KU228_18920 PF07057 DNA helicase TraI KU228_18920 PF08751 TrwC relaxase KU228_18955 PF00239 Resolvase, N terminal domain KU228_18955 PF02796 Helix-turn-helix domain of resolvase KU228_18970 PF01464 Transglycosylase SLT domain KU228_19005 PF10411 Disulfide bond isomerase protein N-terminus KU228_19005 PF13098 Thioredoxin-like domain KU228_19040 PF06834 TraU protein KU228_19050 PF06986 Type-1V conjugative transfer system mating pair stabilisation KU228_19065 PF06122 Conjugative relaxosome accessory transposon protein KU228_19085 PF13438 Domain of unknown function (DUF4113) KU228_19085 PF11799 impB/mucB/samB family C-terminal domain KU228_19085 PF00817 impB/mucB/samB family KU228_19135 PF00593 TonB dependent receptor KU228_19135 PF07715 TonB-dependent Receptor Plug Domain