locus-tag class description KU224_00005 PF00308 Bacterial dnaA protein KU224_00005 PF08299 Bacterial dnaA protein helix-turn-helix KU224_00005 PF11638 DnaA N-terminal domain KU224_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KU224_00010 PF02767 DNA polymerase III beta subunit, central domain KU224_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KU224_00015 PF02463 RecF/RecN/SMC N terminal domain KU224_00020 PF00204 DNA gyrase B KU224_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KU224_00020 PF18053 DNA gyrase B subunit insert domain KU224_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_00020 PF01751 Toprim domain KU224_00030 PF09335 SNARE associated Golgi protein KU224_00035 PF12848 ABC transporter KU224_00035 PF00005 ABC transporter KU224_00055 PF01521 Iron-sulphur cluster biosynthesis KU224_00060 PF00561 alpha/beta hydrolase fold KU224_00065 PF03702 Anhydro-N-acetylmuramic acid kinase KU224_00070 PF00579 tRNA synthetases class I (W and Y) KU224_00130 PF01189 16S rRNA methyltransferase RsmB/F KU224_00130 PF01029 NusB family KU224_00135 PF02911 Formyl transferase, C-terminal domain KU224_00135 PF00551 Formyl transferase KU224_00140 PF00920 Dehydratase family KU224_00155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_00155 PF03466 LysR substrate binding domain KU224_00160 PF00860 Permease family KU224_00165 PF00311 Phosphoenolpyruvate carboxylase KU224_00170 PF00440 Bacterial regulatory proteins, tetR family KU224_00170 PF08361 MAATS-type transcriptional repressor, C-terminal region KU224_00175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU224_00180 PF00873 AcrB/AcrD/AcrF family KU224_00190 PF01556 DnaJ C terminal domain KU224_00190 PF00684 DnaJ central domain KU224_00190 PF00226 DnaJ domain KU224_00200 PF01113 Dihydrodipicolinate reductase, N-terminus KU224_00200 PF05173 Dihydrodipicolinate reductase, C-terminus KU224_00210 PF07690 Major Facilitator Superfamily KU224_00215 PF00248 Aldo/keto reductase family KU224_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_00220 PF03466 LysR substrate binding domain KU224_00235 PF00392 Bacterial regulatory proteins, gntR family KU224_00235 PF00155 Aminotransferase class I and II KU224_00240 PF08240 Alcohol dehydrogenase GroES-like domain KU224_00240 PF00107 Zinc-binding dehydrogenase KU224_00245 PF03352 Methyladenine glycosylase KU224_00260 PF10576 Iron-sulfur binding domain of endonuclease III KU224_00260 PF14815 NUDIX domain KU224_00260 PF00730 HhH-GPD superfamily base excision DNA repair protein KU224_00260 PF00633 Helix-hairpin-helix motif KU224_00275 PF07043 Protein of unknown function (DUF1328) KU224_00280 PF03692 Putative zinc- or iron-chelating domain KU224_00285 PF07995 Glucose / Sorbosone dehydrogenase KU224_00290 PF00004 ATPase family associated with various cellular activities (AAA) KU224_00290 PF16193 AAA C-terminal domain KU224_00290 PF12002 MgsA AAA+ ATPase C terminal KU224_00295 PF01226 Formate/nitrite transporter KU224_00305 PF01259 SAICAR synthetase KU224_00315 PF00701 Dihydrodipicolinate synthetase family KU224_00320 PF00857 Isochorismatase family KU224_00325 PF01758 Sodium Bile acid symporter family KU224_00330 PF01554 MatE KU224_00335 PF04463 Protein of unknown function (DUF523) KU224_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU224_00350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU224_00355 PF02798 Glutathione S-transferase, N-terminal domain KU224_00355 PF14497 Glutathione S-transferase, C-terminal domain KU224_00365 PF00324 Amino acid permease KU224_00375 PF07683 Cobalamin synthesis protein cobW C-terminal domain KU224_00375 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU224_00385 PF07702 UTRA domain KU224_00385 PF00392 Bacterial regulatory proteins, gntR family KU224_00390 PF05962 HutD KU224_00395 PF17391 Urocanase N-terminal domain KU224_00395 PF17392 Urocanase C-terminal domain KU224_00395 PF01175 Urocanase Rossmann-like domain KU224_00400 PF00221 Aromatic amino acid lyase KU224_00405 PF00324 Amino acid permease KU224_00410 PF01979 Amidohydrolase family KU224_00415 PF00491 Arginase family KU224_00430 PF01177 Asp/Glu/Hydantoin racemase KU224_00435 PF01380 SIS domain KU224_00440 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_00440 PF14602 Hexapeptide repeat of succinyl-transferase KU224_00440 PF12804 MobA-like NTP transferase domain KU224_00445 PF04608 Phosphatidylglycerophosphatase A KU224_00450 PF00586 AIR synthase related protein, N-terminal domain KU224_00450 PF02769 AIR synthase related protein, C-terminal domain KU224_00455 PF01029 NusB family KU224_00460 PF00885 6,7-dimethyl-8-ribityllumazine synthase KU224_00465 PF00925 GTP cyclohydrolase II KU224_00465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KU224_00490 PF02580 D-Tyr-tRNA(Tyr) deacylase KU224_00495 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KU224_00495 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KU224_00500 PF00581 Rhodanese-like domain KU224_00505 PF02666 Phosphatidylserine decarboxylase KU224_00510 PF03069 Acetamidase/Formamidase family KU224_00530 PF00512 His Kinase A (phospho-acceptor) domain KU224_00530 PF00989 PAS fold KU224_00530 PF11808 Phosphate regulon sensor protein PhoR KU224_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_00535 PF00072 Response regulator receiver domain KU224_00535 PF00486 Transcriptional regulatory protein, C terminal KU224_00545 PF00106 short chain dehydrogenase KU224_00550 PF01554 MatE KU224_00555 PF00155 Aminotransferase class I and II KU224_00560 PF04286 Protein of unknown function (DUF445) KU224_00575 PF04262 Glutamate-cysteine ligase KU224_00580 PF02600 Disulfide bond formation protein DsbB KU224_00585 PF04717 Type VI secretion system, phage-baseplate injector KU224_00585 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU224_00585 PF13296 Putative type VI secretion system Rhs element Vgr KU224_00590 PF01476 LysM domain KU224_00590 PF00877 NlpC/P60 family KU224_00605 PF05728 Uncharacterised protein family (UPF0227) KU224_00610 PF01751 Toprim domain KU224_00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_00610 PF00986 DNA gyrase B subunit, carboxyl terminus KU224_00610 PF00204 DNA gyrase B KU224_00615 PF00106 short chain dehydrogenase KU224_00620 PF04115 Ureidoglycolate lyase KU224_00625 PF03561 Allantoicase repeat KU224_00630 PF01494 FAD binding domain KU224_00640 PF00860 Permease family KU224_00645 PF00576 HIUase/Transthyretin family KU224_00675 PF02683 Cytochrome C biogenesis protein transmembrane region KU224_00675 PF11412 Disulphide bond corrector protein DsbC KU224_00680 PF00990 Diguanylate cyclase, GGDEF domain KU224_00680 PF07694 5TMR of 5TMR-LYT KU224_00685 PF07859 alpha/beta hydrolase fold KU224_00695 PF03960 ArsC family KU224_00700 PF03372 Endonuclease/Exonuclease/phosphatase family KU224_00705 PF00156 Phosphoribosyl transferase domain KU224_00710 PF00593 TonB dependent receptor KU224_00710 PF07715 TonB-dependent Receptor Plug Domain KU224_00720 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KU224_00720 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KU224_00725 PF03033 Glycosyltransferase family 28 N-terminal domain KU224_00725 PF04101 Glycosyltransferase family 28 C-terminal domain KU224_00730 PF08245 Mur ligase middle domain KU224_00730 PF02875 Mur ligase family, glutamate ligase domain KU224_00730 PF01225 Mur ligase family, catalytic domain KU224_00735 PF01820 D-ala D-ala ligase N-terminus KU224_00735 PF07478 D-ala D-ala ligase C-terminus KU224_00740 PF08478 POTRA domain, FtsQ-type KU224_00740 PF03799 Cell division protein FtsQ KU224_00745 PF02491 SHS2 domain inserted in FTSA KU224_00750 PF00091 Tubulin/FtsZ family, GTPase domain KU224_00750 PF12327 FtsZ family, C-terminal domain KU224_00755 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KU224_00765 PF01551 Peptidase family M23 KU224_00770 PF00456 Transketolase, thiamine diphosphate binding domain KU224_00770 PF17831 Pyruvate dehydrogenase E1 component middle domain KU224_00775 PF02817 e3 binding domain KU224_00775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU224_00775 PF00364 Biotin-requiring enzyme KU224_00785 PF01169 Uncharacterized protein family UPF0016 KU224_00790 PF00593 TonB dependent receptor KU224_00790 PF07715 TonB-dependent Receptor Plug Domain KU224_00795 PF00258 Flavodoxin KU224_00795 PF01613 Flavin reductase like domain KU224_00800 PF03692 Putative zinc- or iron-chelating domain KU224_00805 PF00478 IMP dehydrogenase / GMP reductase domain KU224_00805 PF00571 CBS domain KU224_00810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU224_00810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU224_00810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU224_00810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU224_00815 PF01243 Pyridoxamine 5'-phosphate oxidase KU224_00815 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KU224_00820 PF17768 RecJ OB domain KU224_00820 PF02272 DHHA1 domain KU224_00820 PF01368 DHH family KU224_00840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU224_00845 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KU224_00850 PF04452 RNA methyltransferase KU224_00855 PF00924 Mechanosensitive ion channel KU224_00865 PF13193 AMP-binding enzyme C-terminal domain KU224_00865 PF00501 AMP-binding enzyme KU224_00865 PF16177 Acetyl-coenzyme A synthetase N-terminus KU224_00870 PF00857 Isochorismatase family KU224_00875 PF01037 Lrp/AsnC ligand binding domain KU224_00880 PF00872 Transposase, Mutator family KU224_00885 PF00296 Luciferase-like monooxygenase KU224_00890 PF03358 NADPH-dependent FMN reductase KU224_00895 PF00072 Response regulator receiver domain KU224_00895 PF00196 Bacterial regulatory proteins, luxR family KU224_00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_00905 PF00672 HAMP domain KU224_00905 PF00072 Response regulator receiver domain KU224_00905 PF01627 Hpt domain KU224_00905 PF00512 His Kinase A (phospho-acceptor) domain KU224_00910 PF04341 Protein of unknown function, DUF485 KU224_00915 PF00474 Sodium:solute symporter family KU224_00925 PF02028 BCCT, betaine/carnitine/choline family transporter KU224_00935 PF00990 Diguanylate cyclase, GGDEF domain KU224_00945 PF00005 ABC transporter KU224_00945 PF17755 UvrA DNA-binding domain KU224_00945 PF17760 UvrA interaction domain KU224_00950 PF16925 Tetracyclin repressor-like, C-terminal domain KU224_00950 PF00440 Bacterial regulatory proteins, tetR family KU224_00955 PF08240 Alcohol dehydrogenase GroES-like domain KU224_00955 PF00107 Zinc-binding dehydrogenase KU224_00965 PF06942 GlpM protein KU224_00970 PF08543 Phosphomethylpyrimidine kinase KU224_00970 PF02581 Thiamine monophosphate synthase KU224_00970 PF03070 TENA/THI-4/PQQC family KU224_00980 PF07690 Major Facilitator Superfamily KU224_00985 PF00436 Single-strand binding protein family KU224_00995 PF03591 AzlC protein KU224_01005 PF00324 Amino acid permease KU224_01010 PF00392 Bacterial regulatory proteins, gntR family KU224_01010 PF00155 Aminotransferase class I and II KU224_01015 PF00202 Aminotransferase class-III KU224_01020 PF00171 Aldehyde dehydrogenase family KU224_01025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_01030 PF00857 Isochorismatase family KU224_01035 PF02678 Pirin KU224_01035 PF05726 Pirin C-terminal cupin domain KU224_01040 PF01593 Flavin containing amine oxidoreductase KU224_01060 PF07690 Major Facilitator Superfamily KU224_01065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_01065 PF03466 LysR substrate binding domain KU224_01085 PF00248 Aldo/keto reductase family KU224_01090 PF02311 AraC-like ligand binding domain KU224_01090 PF12833 Helix-turn-helix domain KU224_01120 PF01638 HxlR-like helix-turn-helix KU224_01125 PF02525 Flavodoxin-like fold KU224_01145 PF02705 K+ potassium transporter KU224_01170 PF00230 Major intrinsic protein KU224_01185 PF00977 Histidine biosynthesis protein KU224_01190 PF01636 Phosphotransferase enzyme family KU224_01205 PF03992 Antibiotic biosynthesis monooxygenase KU224_01220 PF00977 Histidine biosynthesis protein KU224_01235 PF00117 Glutamine amidotransferase class-I KU224_01240 PF00475 Imidazoleglycerol-phosphate dehydratase KU224_01260 PF00583 Acetyltransferase (GNAT) family KU224_01265 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KU224_01265 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KU224_01275 PF00672 HAMP domain KU224_01275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_01275 PF00512 His Kinase A (phospho-acceptor) domain KU224_01280 PF00486 Transcriptional regulatory protein, C terminal KU224_01280 PF00072 Response regulator receiver domain KU224_01285 PF00575 S1 RNA binding domain KU224_01285 PF17674 HHH domain KU224_01285 PF09371 Tex-like protein N-terminal domain KU224_01285 PF16921 Tex protein YqgF-like domain KU224_01290 PF01740 STAS domain KU224_01290 PF00916 Sulfate permease family KU224_01295 PF00106 short chain dehydrogenase KU224_01300 PF01053 Cys/Met metabolism PLP-dependent enzyme KU224_01305 PF00005 ABC transporter KU224_01305 PF12848 ABC transporter KU224_01330 PF04191 Phospholipid methyltransferase KU224_01350 PF00529 HlyD membrane-fusion protein of T1SS KU224_01350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU224_01355 PF00873 AcrB/AcrD/AcrF family KU224_01360 PF01545 Cation efflux family KU224_01390 PF00324 Amino acid permease KU224_01405 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU224_01420 PF01795 MraW methylase family KU224_01430 PF00905 Penicillin binding protein transpeptidase domain KU224_01430 PF03717 Penicillin-binding Protein dimerisation domain KU224_01435 PF08245 Mur ligase middle domain KU224_01435 PF02875 Mur ligase family, glutamate ligase domain KU224_01435 PF01225 Mur ligase family, catalytic domain KU224_01440 PF08245 Mur ligase middle domain KU224_01440 PF02875 Mur ligase family, glutamate ligase domain KU224_01440 PF01225 Mur ligase family, catalytic domain KU224_01445 PF00953 Glycosyl transferase family 4 KU224_01455 PF13847 Methyltransferase domain KU224_01460 PF00905 Penicillin binding protein transpeptidase domain KU224_01460 PF00912 Transglycosylase KU224_01460 PF17092 Penicillin-binding protein OB-like domain KU224_01465 PF11104 Type IV pilus assembly protein PilM; KU224_01470 PF05137 Fimbrial assembly protein (PilN) KU224_01475 PF04350 Pilus assembly protein, PilO KU224_01485 PF00263 Bacterial type II and III secretion system protein KU224_01485 PF03958 Bacterial type II/III secretion system short domain KU224_01485 PF07660 Secretin and TonB N terminus short domain KU224_01485 PF11741 AMIN domain KU224_01490 PF01202 Shikimate kinase KU224_01495 PF01761 3-dehydroquinate synthase KU224_01505 PF04898 Glutamate synthase central domain KU224_01505 PF01645 Conserved region in glutamate synthase KU224_01505 PF01493 GXGXG motif KU224_01505 PF00310 Glutamine amidotransferases class-II KU224_01510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KU224_01510 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_01520 PF04011 LemA family KU224_01525 PF04536 TPM domain KU224_01545 PF15864 Protein glycosylation ligase KU224_01545 PF04932 O-Antigen ligase KU224_01545 PF11846 Virulence factor membrane-bound polymerase, C-terminal KU224_01550 PF00210 Ferritin-like domain KU224_01555 PF04324 BFD-like [2Fe-2S] binding domain KU224_01560 PF01042 Endoribonuclease L-PSP KU224_01565 PF13291 ACT domain KU224_01565 PF02824 TGS domain KU224_01565 PF04607 Region found in RelA / SpoT proteins KU224_01575 PF01192 RNA polymerase Rpb6 KU224_01580 PF00625 Guanylate kinase KU224_01585 PF02401 LytB protein KU224_01625 PF00886 Ribosomal protein S16 KU224_01630 PF01782 RimM N-terminal domain KU224_01630 PF05239 PRC-barrel domain KU224_01635 PF01746 tRNA (Guanine-1)-methyltransferase KU224_01640 PF01245 Ribosomal protein L19 KU224_01645 PF00561 alpha/beta hydrolase fold KU224_01650 PF03280 Proteobacterial lipase chaperone protein KU224_01655 PF16198 tRNA pseudouridylate synthase B C-terminal domain KU224_01655 PF09157 Pseudouridine synthase II TruB, C-terminal KU224_01655 PF01509 TruB family pseudouridylate synthase (N terminal domain) KU224_01660 PF01925 Sulfite exporter TauE/SafE KU224_01670 PF00892 EamA-like transporter family KU224_01675 PF00892 EamA-like transporter family KU224_01680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU224_01680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU224_01685 PF02913 FAD linked oxidases, C-terminal domain KU224_01685 PF01565 FAD binding domain KU224_01695 PF03992 Antibiotic biosynthesis monooxygenase KU224_01700 PF02525 Flavodoxin-like fold KU224_01710 PF07690 Major Facilitator Superfamily KU224_01715 PF12805 FUSC-like inner membrane protein yccS KU224_01720 PF00080 Copper/zinc superoxide dismutase (SODC) KU224_01725 PF01594 AI-2E family transporter KU224_01730 PF13614 AAA domain KU224_01760 PF00324 Amino acid permease KU224_01765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KU224_01765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KU224_01770 PF00202 Aminotransferase class-III KU224_01775 PF04958 Arginine N-succinyltransferase beta subunit KU224_01780 PF00171 Aldehyde dehydrogenase family KU224_01785 PF04996 Succinylarginine dihydrolase KU224_01790 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KU224_01805 PF00082 Subtilase family KU224_01805 PF05922 Peptidase inhibitor I9 KU224_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_01820 PF03466 LysR substrate binding domain KU224_01825 PF00892 EamA-like transporter family KU224_01835 PF05746 DALR anticodon binding domain KU224_01835 PF02092 Glycyl-tRNA synthetase beta subunit KU224_01840 PF02091 Glycyl-tRNA synthetase alpha subunit KU224_01865 PF00571 CBS domain KU224_01870 PF04024 PspC domain KU224_01880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_01880 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU224_01880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_01880 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_01890 PF01488 Shikimate / quinate 5-dehydrogenase KU224_01890 PF08501 Shikimate dehydrogenase substrate binding domain KU224_01890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KU224_01895 PF01218 Coproporphyrinogen III oxidase KU224_01900 PF00925 GTP cyclohydrolase II KU224_01905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KU224_01905 PF02779 Transketolase, pyrimidine binding domain KU224_01905 PF02780 Transketolase, C-terminal domain KU224_01910 PF00459 Inositol monophosphatase family KU224_01915 PF00271 Helicase conserved C-terminal domain KU224_01915 PF03880 DbpA RNA binding domain KU224_01915 PF12343 Cold shock protein DEAD box A KU224_01915 PF00270 DEAD/DEAH box helicase KU224_01925 PF00005 ABC transporter KU224_01930 PF02405 Permease MlaE KU224_01940 PF05494 MlaC protein KU224_01950 PF01544 CorA-like Mg2+ transporter protein KU224_01955 PF03641 Possible lysine decarboxylase KU224_01960 PF00293 NUDIX domain KU224_01965 PF00156 Phosphoribosyl transferase domain KU224_01970 PF00270 DEAD/DEAH box helicase KU224_01970 PF00271 Helicase conserved C-terminal domain KU224_01970 PF17191 RecG wedge domain KU224_01985 PF01553 Acyltransferase KU224_01995 PF00375 Sodium:dicarboxylate symporter family KU224_02005 PF01926 50S ribosome-binding GTPase KU224_02010 PF02082 Transcriptional regulator KU224_02015 PF00970 Oxidoreductase FAD-binding domain KU224_02015 PF00042 Globin KU224_02015 PF00175 Oxidoreductase NAD-binding domain KU224_02020 PF05872 Bacterial protein of unknown function (DUF853) KU224_02025 PF01053 Cys/Met metabolism PLP-dependent enzyme KU224_02030 PF00117 Glutamine amidotransferase class-I KU224_02035 PF00338 Ribosomal protein S10p/S20e KU224_02040 PF00297 Ribosomal protein L3 KU224_02045 PF00573 Ribosomal protein L4/L1 family KU224_02050 PF00276 Ribosomal protein L23 KU224_02055 PF03947 Ribosomal Proteins L2, C-terminal domain KU224_02055 PF00181 Ribosomal Proteins L2, RNA binding domain KU224_02060 PF00203 Ribosomal protein S19 KU224_02065 PF00237 Ribosomal protein L22p/L17e KU224_02070 PF07650 KH domain KU224_02070 PF00189 Ribosomal protein S3, C-terminal domain KU224_02075 PF00252 Ribosomal protein L16p/L10e KU224_02080 PF00831 Ribosomal L29 protein KU224_02085 PF00366 Ribosomal protein S17 KU224_02090 PF00238 Ribosomal protein L14p/L23e KU224_02095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KU224_02095 PF00467 KOW motif KU224_02100 PF00281 Ribosomal protein L5 KU224_02100 PF00673 ribosomal L5P family C-terminus KU224_02105 PF00253 Ribosomal protein S14p/S29e KU224_02110 PF00410 Ribosomal protein S8 KU224_02115 PF00347 Ribosomal protein L6 KU224_02120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KU224_02125 PF00333 Ribosomal protein S5, N-terminal domain KU224_02125 PF03719 Ribosomal protein S5, C-terminal domain KU224_02130 PF00327 Ribosomal protein L30p/L7e KU224_02135 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KU224_02140 PF00344 SecY translocase KU224_02145 PF00444 Ribosomal protein L36 KU224_02150 PF00416 Ribosomal protein S13/S18 KU224_02155 PF00411 Ribosomal protein S11 KU224_02160 PF01479 S4 domain KU224_02160 PF00163 Ribosomal protein S4/S9 N-terminal domain KU224_02165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KU224_02165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KU224_02165 PF01000 RNA polymerase Rpb3/RpoA insert domain KU224_02170 PF01196 Ribosomal protein L17 KU224_02175 PF00743 Flavin-binding monooxygenase-like KU224_02180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_02180 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_02180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_02185 PF03937 Flavinator of succinate dehydrogenase KU224_02215 PF09526 Probable metal-binding protein (DUF2387) KU224_02220 PF01432 Peptidase family M3 KU224_02225 PF17876 Cold shock domain KU224_02225 PF08461 Ribonuclease R winged-helix domain KU224_02225 PF08206 Ribonuclease B OB domain KU224_02225 PF00773 RNB domain KU224_02225 PF00575 S1 RNA binding domain KU224_02270 PF01557 Fumarylacetoacetate (FAA) hydrolase family KU224_02275 PF12833 Helix-turn-helix domain KU224_02280 PF00892 EamA-like transporter family KU224_02285 PF03631 Virulence factor BrkB KU224_02290 PF03358 NADPH-dependent FMN reductase KU224_02315 PF02130 Uncharacterized protein family UPF0054 KU224_02320 PF02562 PhoH-like protein KU224_02325 PF01938 TRAM domain KU224_02325 PF00919 Uncharacterized protein family UPF0004 KU224_02325 PF04055 Radical SAM superfamily KU224_02330 PF01551 Peptidase family M23 KU224_02330 PF10145 Phage-related minor tail protein KU224_02330 PF01464 Transglycosylase SLT domain KU224_02340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KU224_02340 PF00056 lactate/malate dehydrogenase, NAD binding domain KU224_02360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KU224_02365 PF01066 CDP-alcohol phosphatidyltransferase KU224_02410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_02410 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_02410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_02415 PF17932 Tetracyclin repressor-like, C-terminal domain KU224_02415 PF00440 Bacterial regulatory proteins, tetR family KU224_02430 PF01039 Carboxyl transferase domain KU224_02435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_02435 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_02435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_02445 PF02785 Biotin carboxylase C-terminal domain KU224_02445 PF00289 Biotin carboxylase, N-terminal domain KU224_02445 PF00364 Biotin-requiring enzyme KU224_02445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU224_02455 PF04386 Stringent starvation protein B KU224_02460 PF00043 Glutathione S-transferase, C-terminal domain KU224_02460 PF13417 Glutathione S-transferase, N-terminal domain KU224_02465 PF00380 Ribosomal protein S9/S16 KU224_02470 PF00572 Ribosomal protein L13 KU224_02475 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KU224_02480 PF00398 Ribosomal RNA adenine dimethylase KU224_02485 PF00149 Calcineurin-like phosphoesterase KU224_02505 PF01926 50S ribosome-binding GTPase KU224_02505 PF13167 GTP-binding GTPase N-terminal KU224_02505 PF16360 GTP-binding GTPase Middle Region KU224_02515 PF13091 PLD-like domain KU224_02520 PF10518 TAT (twin-arginine translocation) pathway signal sequence KU224_02520 PF00149 Calcineurin-like phosphoesterase KU224_02525 PF00691 OmpA family KU224_02525 PF01389 OmpA-like transmembrane domain KU224_02530 PF17152 Periplasmic sensor domain KU224_02530 PF00990 Diguanylate cyclase, GGDEF domain KU224_02565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU224_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_02575 PF00753 Metallo-beta-lactamase superfamily KU224_02575 PF04273 Putative phosphatase (DUF442) KU224_02580 PF00561 alpha/beta hydrolase fold KU224_02585 PF00085 Thioredoxin KU224_02590 PF03061 Thioesterase superfamily KU224_02600 PF04461 Protein of unknown function (DUF520) KU224_02610 PF01266 FAD dependent oxidoreductase KU224_02610 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KU224_02620 PF03795 YCII-related domain KU224_02625 PF04279 Intracellular septation protein A KU224_02630 PF02811 PHP domain KU224_02635 PF01062 Bestrophin, RFP-TM, chloride channel KU224_02640 PF04002 RadC-like JAB domain KU224_02645 PF04127 DNA / pantothenate metabolism flavoprotein KU224_02645 PF02441 Flavoprotein KU224_02650 PF07549 SecD/SecF GG Motif KU224_02650 PF02355 Protein export membrane protein KU224_02655 PF02355 Protein export membrane protein KU224_02655 PF07549 SecD/SecF GG Motif KU224_02655 PF13721 SecD export protein N-terminal TM region KU224_02660 PF02699 Preprotein translocase subunit KU224_02665 PF01702 Queuine tRNA-ribosyltransferase KU224_02680 PF02547 Queuosine biosynthesis protein KU224_02690 PF00512 His Kinase A (phospho-acceptor) domain KU224_02690 PF07689 KaiB domain KU224_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_02695 PF08335 GlnD PII-uridylyltransferase KU224_02695 PF03710 Glutamate-ammonia ligase adenylyltransferase KU224_02700 PF01063 Amino-transferase class IV KU224_02715 PF01522 Polysaccharide deacetylase KU224_02720 PF00535 Glycosyl transferase family 2 KU224_02725 PF13439 Glycosyltransferase Family 4 KU224_02725 PF00534 Glycosyl transferases group 1 KU224_02750 PF17101 Stealth protein CR1, conserved region 1 KU224_02750 PF11380 Stealth protein CR2, conserved region 2 KU224_02750 PF17102 Stealth protein CR3, conserved region 3 KU224_02755 PF00152 tRNA synthetases class II (D, K and N) KU224_02755 PF01336 OB-fold nucleic acid binding domain KU224_02755 PF02938 GAD domain KU224_02765 PF07715 TonB-dependent Receptor Plug Domain KU224_02765 PF00593 TonB dependent receptor KU224_02785 PF06146 Phosphate-starvation-inducible E KU224_02790 PF00043 Glutathione S-transferase, C-terminal domain KU224_02790 PF02798 Glutathione S-transferase, N-terminal domain KU224_02795 PF03466 LysR substrate binding domain KU224_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_02800 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_02800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_02800 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU224_02800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_02805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_02805 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_02805 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU224_02805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_02815 PF00512 His Kinase A (phospho-acceptor) domain KU224_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_02815 PF00672 HAMP domain KU224_02820 PF00072 Response regulator receiver domain KU224_02820 PF00486 Transcriptional regulatory protein, C terminal KU224_02825 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KU224_02845 PF01923 Cobalamin adenosyltransferase KU224_02850 PF00593 TonB dependent receptor KU224_02850 PF07715 TonB-dependent Receptor Plug Domain KU224_02855 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KU224_02860 PF00291 Pyridoxal-phosphate dependent enzyme KU224_02885 PF00290 Tryptophan synthase alpha chain KU224_02890 PF01039 Carboxyl transferase domain KU224_02895 PF08245 Mur ligase middle domain KU224_02895 PF02875 Mur ligase family, glutamate ligase domain KU224_02910 PF00753 Metallo-beta-lactamase superfamily KU224_02915 PF10417 C-terminal domain of 1-Cys peroxiredoxin KU224_02915 PF00578 AhpC/TSA family KU224_02920 PF07516 SecA Wing and Scaffold domain KU224_02920 PF02810 SEC-C motif KU224_02920 PF07517 SecA DEAD-like domain KU224_02920 PF01043 SecA preprotein cross-linking domain KU224_02930 PF07690 Major Facilitator Superfamily KU224_02930 PF00083 Sugar (and other) transporter KU224_02935 PF03006 Haemolysin-III related KU224_02960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU224_02960 PF00378 Enoyl-CoA hydratase/isomerase KU224_02960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU224_02965 PF02803 Thiolase, C-terminal domain KU224_02965 PF00108 Thiolase, N-terminal domain KU224_02970 PF02311 AraC-like ligand binding domain KU224_02970 PF12833 Helix-turn-helix domain KU224_02975 PF02515 CoA-transferase family III KU224_02980 PF04966 Carbohydrate-selective porin, OprB family KU224_02985 PF01011 PQQ enzyme repeat KU224_02990 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU224_02990 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU224_03000 PF00893 Small Multidrug Resistance protein KU224_03010 PF02803 Thiolase, C-terminal domain KU224_03010 PF00108 Thiolase, N-terminal domain KU224_03020 PF13505 Outer membrane protein beta-barrel domain KU224_03020 PF00691 OmpA family KU224_03030 PF01139 tRNA-splicing ligase RtcB KU224_03035 PF00324 Amino acid permease KU224_03040 PF05175 Methyltransferase small domain KU224_03040 PF08468 Methyltransferase small domain N-terminal KU224_03045 PF00860 Permease family KU224_03050 PF03144 Elongation factor Tu domain 2 KU224_03050 PF00679 Elongation factor G C-terminus KU224_03050 PF00009 Elongation factor Tu GTP binding domain KU224_03055 PF01741 Large-conductance mechanosensitive channel, MscL KU224_03070 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KU224_03070 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KU224_03070 PF06827 Zinc finger found in FPG and IleRS KU224_03075 PF02245 Methylpurine-DNA glycosylase (MPG) KU224_03080 PF07715 TonB-dependent Receptor Plug Domain KU224_03080 PF00593 TonB dependent receptor KU224_03095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU224_03110 PF10411 Disulfide bond isomerase protein N-terminus KU224_03110 PF13098 Thioredoxin-like domain KU224_03115 PF01571 Aminomethyltransferase folate-binding domain KU224_03125 PF04343 Protein of unknown function, DUF488 KU224_03130 PF08274 PhnA Zinc-Ribbon KU224_03130 PF03831 PhnA domain KU224_03135 PF07411 Domain of unknown function (DUF1508) KU224_03140 PF03129 Anticodon binding domain KU224_03140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU224_03140 PF04073 Aminoacyl-tRNA editing domain KU224_03145 PF00873 AcrB/AcrD/AcrF family KU224_03160 PF00072 Response regulator receiver domain KU224_03165 PF00072 Response regulator receiver domain KU224_03170 PF01584 CheW-like domain KU224_03175 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KU224_03175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KU224_03180 PF01584 CheW-like domain KU224_03180 PF00072 Response regulator receiver domain KU224_03180 PF01627 Hpt domain KU224_03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_03190 PF01546 Peptidase family M20/M25/M40 KU224_03190 PF07687 Peptidase dimerisation domain KU224_03195 PF08085 Entericidin EcnA/B family KU224_03205 PF04304 Protein of unknown function (DUF454) KU224_03210 PF03734 L,D-transpeptidase catalytic domain KU224_03210 PF17969 L,D-transpeptidase C-terminal domain KU224_03250 PF00667 FAD binding domain KU224_03250 PF00258 Flavodoxin KU224_03250 PF00175 Oxidoreductase NAD-binding domain KU224_03260 PF12805 FUSC-like inner membrane protein yccS KU224_03265 PF07690 Major Facilitator Superfamily KU224_03270 PF00881 Nitroreductase family KU224_03285 PF01235 Sodium:alanine symporter family KU224_03290 PF01734 Patatin-like phospholipase KU224_03295 PF00291 Pyridoxal-phosphate dependent enzyme KU224_03295 PF13291 ACT domain KU224_03300 PF05992 SbmA/BacA-like family KU224_03340 PF02637 GatB domain KU224_03340 PF02934 GatB/GatE catalytic domain KU224_03345 PF01425 Amidase KU224_03350 PF02686 Glu-tRNAGln amidotransferase C subunit KU224_03360 PF04085 rod shape-determining protein MreC KU224_03365 PF04093 rod shape-determining protein MreD KU224_03370 PF02545 Maf-like protein KU224_03375 PF00575 S1 RNA binding domain KU224_03375 PF10150 Ribonuclease E/G family KU224_03385 PF06974 Protein of unknown function (DUF1298) KU224_03385 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KU224_03390 PF01507 Phosphoadenosine phosphosulfate reductase family KU224_03405 PF02525 Flavodoxin-like fold KU224_03425 PF02673 Bacitracin resistance protein BacA KU224_03430 PF06719 AraC-type transcriptional regulator N-terminus KU224_03430 PF12833 Helix-turn-helix domain KU224_03435 PF08990 Erythronolide synthase docking KU224_03435 PF09277 Erythronolide synthase, docking KU224_03435 PF00698 Acyl transferase domain KU224_03435 PF16197 Ketoacyl-synthetase C-terminal extension KU224_03435 PF02801 Beta-ketoacyl synthase, C-terminal domain KU224_03435 PF08659 KR domain KU224_03435 PF00550 Phosphopantetheine attachment site KU224_03435 PF14765 Polyketide synthase dehydratase KU224_03435 PF08240 Alcohol dehydrogenase GroES-like domain KU224_03435 PF00109 Beta-ketoacyl synthase, N-terminal domain KU224_03440 PF01965 DJ-1/PfpI family KU224_03450 PF00324 Amino acid permease KU224_03455 PF04303 PrpF protein KU224_03460 PF00348 Polyprenyl synthetase KU224_03465 PF04237 YjbR KU224_03470 PF01145 SPFH domain / Band 7 family KU224_03480 PF01734 Patatin-like phospholipase KU224_03500 PF00884 Sulfatase KU224_03500 PF08019 Phosphoethanolamine transferase EptA/EptB KU224_03505 PF00486 Transcriptional regulatory protein, C terminal KU224_03505 PF00072 Response regulator receiver domain KU224_03510 PF08521 Two-component sensor kinase N-terminal KU224_03510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_03510 PF00512 His Kinase A (phospho-acceptor) domain KU224_03520 PF00909 Ammonium Transporter Family KU224_03525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_03525 PF03466 LysR substrate binding domain KU224_03545 PF08264 Anticodon-binding domain of tRNA KU224_03545 PF10458 Valyl tRNA synthetase tRNA binding arm KU224_03545 PF00133 tRNA synthetases class I (I, L, M and V) KU224_03565 PF01906 Putative heavy-metal-binding KU224_03570 PF01906 Putative heavy-metal-binding KU224_03575 PF02321 Outer membrane efflux protein KU224_03580 PF00873 AcrB/AcrD/AcrF family KU224_03585 PF00529 HlyD membrane-fusion protein of T1SS KU224_03585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU224_03590 PF01569 PAP2 superfamily KU224_03600 PF00348 Polyprenyl synthetase KU224_03610 PF00829 Ribosomal prokaryotic L21 protein KU224_03615 PF01016 Ribosomal L27 protein KU224_03620 PF03548 Outer membrane lipoprotein carrier protein LolA KU224_03630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU224_03630 PF02403 Seryl-tRNA synthetase N-terminal domain KU224_03635 PF10414 Sirohaem synthase dimerisation region KU224_03635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KU224_03635 PF14824 Sirohaem biosynthesis protein central KU224_03640 PF00588 SpoU rRNA Methylase family KU224_03645 PF01638 HxlR-like helix-turn-helix KU224_03650 PF03358 NADPH-dependent FMN reductase KU224_03655 PF13520 Amino acid permease KU224_03660 PF00465 Iron-containing alcohol dehydrogenase KU224_03670 PF03099 Biotin/lipoate A/B protein ligase family KU224_03675 PF04359 Protein of unknown function (DUF493) KU224_03680 PF03979 Sigma-70 factor, region 1.1 KU224_03680 PF00140 Sigma-70 factor, region 1.2 KU224_03680 PF04542 Sigma-70 region 2 KU224_03680 PF04539 Sigma-70 region 3 KU224_03680 PF04545 Sigma-70, region 4 KU224_03680 PF04546 Sigma-70, non-essential region KU224_03700 PF00581 Rhodanese-like domain KU224_03700 PF17773 UPF0176 acylphosphatase like domain KU224_03710 PF00285 Citrate synthase, C-terminal domain KU224_03715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KU224_03720 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KU224_03725 PF00890 FAD binding domain KU224_03725 PF02910 Fumarate reductase flavoprotein C-term KU224_03730 PF13085 2Fe-2S iron-sulfur cluster binding domain KU224_03745 PF16078 2-oxoglutarate dehydrogenase N-terminus KU224_03745 PF00676 Dehydrogenase E1 component KU224_03745 PF16870 2-oxoglutarate dehydrogenase C-terminal KU224_03745 PF02779 Transketolase, pyrimidine binding domain KU224_03750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU224_03750 PF00364 Biotin-requiring enzyme KU224_03750 PF02817 e3 binding domain KU224_03755 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_03755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU224_03760 PF08442 ATP-grasp domain KU224_03760 PF00549 CoA-ligase KU224_03765 PF00549 CoA-ligase KU224_03765 PF02629 CoA binding domain KU224_03770 PF00579 tRNA synthetases class I (W and Y) KU224_03775 PF05661 Protein of unknown function (DUF808) KU224_03780 PF04228 Putative neutral zinc metallopeptidase KU224_03785 PF00999 Sodium/hydrogen exchanger family KU224_03820 PF09587 Bacterial capsule synthesis protein PGA_cap KU224_03830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU224_03835 PF00582 Universal stress protein family KU224_03840 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_03845 PF01272 Transcription elongation factor, GreA/GreB, C-term KU224_03845 PF03449 Transcription elongation factor, N-terminal KU224_03850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU224_03850 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KU224_03850 PF02142 MGS-like domain KU224_03855 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KU224_03855 PF00117 Glutamine amidotransferase class-I KU224_03870 PF01985 CRS1 / YhbY (CRM) domain KU224_03875 PF01728 FtsJ-like methyltransferase KU224_03880 PF17862 AAA+ lid domain KU224_03880 PF06480 FtsH Extracellular KU224_03880 PF01434 Peptidase family M41 KU224_03880 PF00004 ATPase family associated with various cellular activities (AAA) KU224_03885 PF00809 Pterin binding enzyme KU224_03905 PF09423 PhoD-like phosphatase KU224_03905 PF16655 PhoD-like phosphatase, N-terminal domain KU224_03920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KU224_03920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KU224_03935 PF00083 Sugar (and other) transporter KU224_03940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KU224_03940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KU224_03945 PF01266 FAD dependent oxidoreductase KU224_03945 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KU224_03950 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KU224_03950 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KU224_03955 PF00781 Diacylglycerol kinase catalytic domain KU224_03960 PF00149 Calcineurin-like phosphoesterase KU224_03970 PF00166 Chaperonin 10 Kd subunit KU224_03975 PF00118 TCP-1/cpn60 chaperonin family KU224_03980 PF01219 Prokaryotic diacylglycerol kinase KU224_03990 PF03009 Glycerophosphoryl diester phosphodiesterase family KU224_03995 PF00873 AcrB/AcrD/AcrF family KU224_04005 PF01435 Peptidase family M48 KU224_04010 PF01464 Transglycosylase SLT domain KU224_04015 PF01171 PP-loop family KU224_04025 PF01464 Transglycosylase SLT domain KU224_04025 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU224_04030 PF03449 Transcription elongation factor, N-terminal KU224_04030 PF01272 Transcription elongation factor, GreA/GreB, C-term KU224_04045 PF00975 Thioesterase domain KU224_04045 PF00668 Condensation domain KU224_04045 PF13193 AMP-binding enzyme C-terminal domain KU224_04045 PF00501 AMP-binding enzyme KU224_04045 PF00550 Phosphopantetheine attachment site KU224_04070 PF00881 Nitroreductase family KU224_04085 PF02595 Glycerate kinase family KU224_04090 PF00384 Molybdopterin oxidoreductase KU224_04095 PF02634 FdhD/NarQ family KU224_04100 PF06803 Protein of unknown function (DUF1232) KU224_04105 PF11890 Domain of unknown function (DUF3410) KU224_04105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU224_04105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU224_04110 PF00152 tRNA synthetases class II (D, K and N) KU224_04120 PF18073 Rubredoxin metal binding domain KU224_04125 PF00324 Amino acid permease KU224_04135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KU224_04135 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KU224_04140 PF01678 Diaminopimelate epimerase KU224_04145 PF01810 LysE type translocator KU224_04150 PF02899 Phage integrase, N-terminal SAM-like domain KU224_04150 PF00589 Phage integrase family KU224_04155 PF01012 Electron transfer flavoprotein domain KU224_04160 PF01012 Electron transfer flavoprotein domain KU224_04160 PF00766 Electron transfer flavoprotein FAD-binding domain KU224_04165 PF03989 DNA gyrase C-terminal domain, beta-propeller KU224_04165 PF00521 DNA gyrase/topoisomerase IV, subunit A KU224_04180 PF00535 Glycosyl transferase family 2 KU224_04200 PF13533 Biotin-lipoyl like KU224_04210 PF00266 Aminotransferase class-V KU224_04225 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KU224_04235 PF02687 FtsX-like permease family KU224_04235 PF12704 MacB-like periplasmic core domain KU224_04240 PF00005 ABC transporter KU224_04245 PF03772 Competence protein KU224_04245 PF13567 Domain of unknown function (DUF4131) KU224_04245 PF00753 Metallo-beta-lactamase superfamily KU224_04255 PF06965 Na+/H+ antiporter 1 KU224_04255 PF01343 Peptidase family S49 KU224_04260 PF12697 Alpha/beta hydrolase family KU224_04265 PF00551 Formyl transferase KU224_04270 PF00586 AIR synthase related protein, N-terminal domain KU224_04270 PF02769 AIR synthase related protein, C-terminal domain KU224_04275 PF01594 AI-2E family transporter KU224_04280 PF00308 Bacterial dnaA protein KU224_04280 PF08299 Bacterial dnaA protein helix-turn-helix KU224_04280 PF11638 DnaA N-terminal domain KU224_04310 PF08032 RNA 2'-O ribose methyltransferase substrate binding KU224_04310 PF00588 SpoU rRNA Methylase family KU224_04315 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KU224_04325 PF00691 OmpA family KU224_04330 PF07676 WD40-like Beta Propeller Repeat KU224_04330 PF04052 TolB amino-terminal domain KU224_04340 PF02472 Biopolymer transport protein ExbD/TolR KU224_04345 PF01618 MotA/TolQ/ExbB proton channel family KU224_04350 PF03061 Thioesterase superfamily KU224_04355 PF07687 Peptidase dimerisation domain KU224_04355 PF01546 Peptidase family M20/M25/M40 KU224_04360 PF17864 RuvB AAA lid domain KU224_04360 PF05496 Holliday junction DNA helicase RuvB P-loop domain KU224_04360 PF05491 RuvB C-terminal winged helix domain KU224_04365 PF07499 RuvA, C-terminal domain KU224_04365 PF01330 RuvA N terminal domain KU224_04370 PF01966 HD domain KU224_04375 PF02769 AIR synthase related protein, C-terminal domain KU224_04375 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KU224_04375 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KU224_04380 PF07690 Major Facilitator Superfamily KU224_04385 PF01784 NIF3 (NGG1p interacting factor 3) KU224_04390 PF00378 Enoyl-CoA hydratase/isomerase KU224_04395 PF01467 Cytidylyltransferase-like KU224_04395 PF00293 NUDIX domain KU224_04405 PF00578 AhpC/TSA family KU224_04420 PF06508 Queuosine biosynthesis protein QueC KU224_04430 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KU224_04430 PF14602 Hexapeptide repeat of succinyl-transferase KU224_04430 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_04440 PF03466 LysR substrate binding domain KU224_04440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_04445 PF12857 TOBE-like domain KU224_04445 PF00005 ABC transporter KU224_04450 PF00528 Binding-protein-dependent transport system inner membrane component KU224_04455 PF00528 Binding-protein-dependent transport system inner membrane component KU224_04470 PF01063 Amino-transferase class IV KU224_04475 PF02618 YceG-like family KU224_04480 PF02223 Thymidylate kinase KU224_04490 PF00890 FAD binding domain KU224_04490 PF02910 Fumarate reductase flavoprotein C-term KU224_04495 PF13180 PDZ domain KU224_04505 PF00679 Elongation factor G C-terminus KU224_04505 PF00009 Elongation factor Tu GTP binding domain KU224_04505 PF03144 Elongation factor Tu domain 2 KU224_04505 PF06421 GTP-binding protein LepA C-terminus KU224_04510 PF10502 Signal peptidase, peptidase S26 KU224_04520 PF14622 Ribonuclease-III-like KU224_04520 PF00035 Double-stranded RNA binding motif KU224_04525 PF01926 50S ribosome-binding GTPase KU224_04525 PF07650 KH domain KU224_04535 PF11967 Recombination protein O N terminal KU224_04535 PF02565 Recombination protein O C terminal KU224_04540 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KU224_04545 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KU224_04550 PF00106 short chain dehydrogenase KU224_04580 PF00155 Aminotransferase class I and II KU224_04590 PF00990 Diguanylate cyclase, GGDEF domain KU224_04590 PF17151 Periplasmic sensor domain KU224_04600 PF17757 UvrB interaction domain KU224_04600 PF12344 Ultra-violet resistance protein B KU224_04600 PF00271 Helicase conserved C-terminal domain KU224_04600 PF02151 UvrB/uvrC motif KU224_04600 PF04851 Type III restriction enzyme, res subunit KU224_04610 PF00892 EamA-like transporter family KU224_04615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KU224_04615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KU224_04630 PF01018 GTP1/OBG KU224_04630 PF01926 50S ribosome-binding GTPase KU224_04635 PF00696 Amino acid kinase family KU224_04635 PF01472 PUA domain KU224_04645 PF07759 Protein of unknown function (DUF1615) KU224_04650 PF01207 Dihydrouridine synthase (Dus) KU224_04655 PF03060 Nitronate monooxygenase KU224_04670 PF02350 UDP-N-acetylglucosamine 2-epimerase KU224_04700 PF03441 FAD binding domain of DNA photolyase KU224_04700 PF00875 DNA photolyase KU224_04705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU224_04710 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_04715 PF00768 D-alanyl-D-alanine carboxypeptidase KU224_04715 PF07943 Penicillin-binding protein 5, C-terminal domain KU224_04725 PF03971 Monomeric isocitrate dehydrogenase KU224_04730 PF00849 RNA pseudouridylate synthase KU224_04735 PF00180 Isocitrate/isopropylmalate dehydrogenase KU224_04755 PF06779 Uncharacterised MFS-type transporter YbfB KU224_04760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_04760 PF03466 LysR substrate binding domain KU224_04765 PF00375 Sodium:dicarboxylate symporter family KU224_04770 PF02567 Phenazine biosynthesis-like protein KU224_04775 PF05193 Peptidase M16 inactive domain KU224_04775 PF00675 Insulinase (Peptidase family M16) KU224_04800 PF02581 Thiamine monophosphate synthase KU224_04805 PF00202 Aminotransferase class-III KU224_04815 PF00849 RNA pseudouridylate synthase KU224_04820 PF12137 RNA polymerase recycling family C-terminal KU224_04820 PF18339 RapA N-terminal Tudor like domain 1 KU224_04820 PF00271 Helicase conserved C-terminal domain KU224_04820 PF00176 SNF2 family N-terminal domain KU224_04820 PF18337 RapA N-terminal Tudor like domain KU224_04830 PF00440 Bacterial regulatory proteins, tetR family KU224_04835 PF00111 2Fe-2S iron-sulfur cluster binding domain KU224_04835 PF00970 Oxidoreductase FAD-binding domain KU224_04835 PF00175 Oxidoreductase NAD-binding domain KU224_04840 PF00487 Fatty acid desaturase KU224_04850 PF00440 Bacterial regulatory proteins, tetR family KU224_04850 PF17754 MftR C-terminal domain KU224_04860 PF00202 Aminotransferase class-III KU224_04865 PF00282 Pyridoxal-dependent decarboxylase conserved domain KU224_04870 PF00171 Aldehyde dehydrogenase family KU224_04875 PF01037 Lrp/AsnC ligand binding domain KU224_04880 PF00205 Thiamine pyrophosphate enzyme, central domain KU224_04880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU224_04880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU224_04885 PF00324 Amino acid permease KU224_04890 PF12849 PBP superfamily domain KU224_04895 PF00528 Binding-protein-dependent transport system inner membrane component KU224_04900 PF00528 Binding-protein-dependent transport system inner membrane component KU224_04905 PF00005 ABC transporter KU224_04910 PF01343 Peptidase family S49 KU224_04910 PF08496 Peptidase family S49 N-terminal KU224_04920 PF00872 Transposase, Mutator family KU224_04930 PF00206 Lyase KU224_04930 PF08328 Adenylosuccinate lyase C-terminal KU224_04935 PF04356 Protein of unknown function (DUF489) KU224_04945 PF13344 Haloacid dehalogenase-like hydrolase KU224_04945 PF00293 NUDIX domain KU224_04950 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_04955 PF07943 Penicillin-binding protein 5, C-terminal domain KU224_04955 PF00768 D-alanyl-D-alanine carboxypeptidase KU224_04970 PF01975 Survival protein SurE KU224_04975 PF01476 LysM domain KU224_04975 PF01551 Peptidase family M23 KU224_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_04980 PF03466 LysR substrate binding domain KU224_04985 PF13654 AAA domain KU224_04985 PF05362 Lon protease (S16) C-terminal proteolytic domain KU224_04990 PF07690 Major Facilitator Superfamily KU224_04995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU224_05000 PF13593 SBF-like CPA transporter family (DUF4137) KU224_05005 PF01197 Ribosomal protein L31 KU224_05020 PF04055 Radical SAM superfamily KU224_05025 PF09285 Elongation factor P, C-terminal KU224_05025 PF08207 Elongation factor P (EF-P) KOW-like domain KU224_05025 PF01132 Elongation factor P (EF-P) OB domain KU224_05030 PF02554 Carbon starvation protein CstA KU224_05030 PF13722 5TM C-terminal transporter carbon starvation CstA KU224_05035 PF04328 Selenoprotein, putative KU224_05065 PF06018 CodY GAF-like domain KU224_05065 PF17853 GGDEF-like domain KU224_05065 PF13556 PucR C-terminal helix-turn-helix domain KU224_05080 PF00171 Aldehyde dehydrogenase family KU224_05085 PF00324 Amino acid permease KU224_05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_05090 PF03466 LysR substrate binding domain KU224_05095 PF02028 BCCT, betaine/carnitine/choline family transporter KU224_05100 PF02028 BCCT, betaine/carnitine/choline family transporter KU224_05105 PF00355 Rieske [2Fe-2S] domain KU224_05105 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU224_05110 PF00171 Aldehyde dehydrogenase family KU224_05115 PF18113 Rubredoxin binding C-terminal domain KU224_05115 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_05120 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KU224_05120 PF01266 FAD dependent oxidoreductase KU224_05140 PF00892 EamA-like transporter family KU224_05150 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system KU224_05155 PF00083 Sugar (and other) transporter KU224_05160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KU224_05160 PF13378 Enolase C-terminal domain-like KU224_05165 PF08240 Alcohol dehydrogenase GroES-like domain KU224_05165 PF00698 Acyl transferase domain KU224_05165 PF08990 Erythronolide synthase docking KU224_05165 PF09277 Erythronolide synthase, docking KU224_05165 PF00109 Beta-ketoacyl synthase, N-terminal domain KU224_05165 PF02801 Beta-ketoacyl synthase, C-terminal domain KU224_05165 PF08659 KR domain KU224_05165 PF00550 Phosphopantetheine attachment site KU224_05165 PF14765 Polyketide synthase dehydratase KU224_05165 PF16197 Ketoacyl-synthetase C-terminal extension KU224_05170 PF00440 Bacterial regulatory proteins, tetR family KU224_05190 PF17954 Quercetinase C-terminal cupin domain KU224_05190 PF02678 Pirin KU224_05200 PF08348 YheO-like PAS domain KU224_05200 PF13309 HTH domain KU224_05210 PF00668 Condensation domain KU224_05210 PF13193 AMP-binding enzyme C-terminal domain KU224_05210 PF00550 Phosphopantetheine attachment site KU224_05210 PF00501 AMP-binding enzyme KU224_05215 PF00550 Phosphopantetheine attachment site KU224_05215 PF00501 AMP-binding enzyme KU224_05215 PF00668 Condensation domain KU224_05215 PF00975 Thioesterase domain KU224_05215 PF13193 AMP-binding enzyme C-terminal domain KU224_05220 PF01032 FecCD transport family KU224_05225 PF01032 FecCD transport family KU224_05230 PF00005 ABC transporter KU224_05235 PF01497 Periplasmic binding protein KU224_05240 PF07715 TonB-dependent Receptor Plug Domain KU224_05240 PF00593 TonB dependent receptor KU224_05245 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KU224_05250 PF00501 AMP-binding enzyme KU224_05250 PF00550 Phosphopantetheine attachment site KU224_05250 PF00668 Condensation domain KU224_05255 PF13193 AMP-binding enzyme C-terminal domain KU224_05255 PF00501 AMP-binding enzyme KU224_05260 PF00857 Isochorismatase family KU224_05260 PF00550 Phosphopantetheine attachment site KU224_05265 PF00282 Pyridoxal-dependent decarboxylase conserved domain KU224_05275 PF00005 ABC transporter KU224_05280 PF00005 ABC transporter KU224_05285 PF00975 Thioesterase domain KU224_05295 PF00425 chorismate binding enzyme KU224_05305 PF01208 Uroporphyrinogen decarboxylase (URO-D) KU224_05310 PF05675 Protein of unknown function (DUF817) KU224_05325 PF00144 Beta-lactamase KU224_05335 PF01227 GTP cyclohydrolase I KU224_05340 PF00111 2Fe-2S iron-sulfur cluster binding domain KU224_05340 PF01799 [2Fe-2S] binding domain KU224_05345 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KU224_05345 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KU224_05360 PF00218 Indole-3-glycerol phosphate synthase KU224_05365 PF00591 Glycosyl transferase family, a/b domain KU224_05365 PF02885 Glycosyl transferase family, helical bundle domain KU224_05370 PF07715 TonB-dependent Receptor Plug Domain KU224_05370 PF00593 TonB dependent receptor KU224_05375 PF11838 ERAP1-like C-terminal domain KU224_05375 PF01433 Peptidase family M1 domain KU224_05380 PF00117 Glutamine amidotransferase class-I KU224_05735 PF13356 Arm DNA-binding domain KU224_05735 PF00589 Phage integrase family KU224_05745 PF00854 POT family KU224_05750 PF00120 Glutamine synthetase, catalytic domain KU224_05750 PF03951 Glutamine synthetase, beta-Grasp domain KU224_05755 PF04345 Chorismate lyase KU224_05760 PF01040 UbiA prenyltransferase family KU224_05795 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KU224_05795 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KU224_05800 PF01784 NIF3 (NGG1p interacting factor 3) KU224_05805 PF13180 PDZ domain KU224_05810 PF01743 Poly A polymerase head domain KU224_05810 PF12627 Probable RNA and SrmB- binding site of polymerase A KU224_05815 PF00390 Malic enzyme, N-terminal domain KU224_05815 PF03949 Malic enzyme, NAD binding domain KU224_05815 PF01515 Phosphate acetyl/butaryl transferase KU224_05820 PF00563 EAL domain KU224_05820 PF00990 Diguanylate cyclase, GGDEF domain KU224_05820 PF03707 Bacterial signalling protein N terminal repeat KU224_05825 PF04452 RNA methyltransferase KU224_05830 PF02219 Methylenetetrahydrofolate reductase KU224_05835 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KU224_05835 PF05221 S-adenosyl-L-homocysteine hydrolase KU224_05850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_05850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_05850 PF09317 Domain of unknown function (DUF1974) KU224_05855 PF04055 Radical SAM superfamily KU224_05860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU224_05860 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_05870 PF07690 Major Facilitator Superfamily KU224_05880 PF00557 Metallopeptidase family M24 KU224_05885 PF00318 Ribosomal protein S2 KU224_05890 PF00889 Elongation factor TS KU224_05900 PF12833 Helix-turn-helix domain KU224_05920 PF03330 Lytic transglycolase KU224_05920 PF05036 Sporulation related domain KU224_05925 PF13406 Transglycosylase SLT domain KU224_05930 PF01098 Cell cycle protein KU224_05940 PF14489 QueF-like protein KU224_05940 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KU224_05945 PF01061 ABC-2 type transporter KU224_05950 PF00005 ABC transporter KU224_05980 PF00464 Serine hydroxymethyltransferase KU224_05985 PF02321 Outer membrane efflux protein KU224_05990 PF00873 AcrB/AcrD/AcrF family KU224_05995 PF13533 Biotin-lipoyl like KU224_06000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_06000 PF03466 LysR substrate binding domain KU224_06005 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU224_06010 PF00528 Binding-protein-dependent transport system inner membrane component KU224_06015 PF00528 Binding-protein-dependent transport system inner membrane component KU224_06020 PF00005 ABC transporter KU224_06025 PF00893 Small Multidrug Resistance protein KU224_06030 PF00037 4Fe-4S binding domain KU224_06035 PF01136 Peptidase family U32 KU224_06035 PF16325 Peptidase family U32 C-terminal domain KU224_06040 PF00155 Aminotransferase class I and II KU224_06040 PF00392 Bacterial regulatory proteins, gntR family KU224_06045 PF02567 Phenazine biosynthesis-like protein KU224_06050 PF00970 Oxidoreductase FAD-binding domain KU224_06050 PF00175 Oxidoreductase NAD-binding domain KU224_06055 PF18389 TrmO C-terminal domain KU224_06055 PF01980 tRNA-methyltransferase O KU224_06065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KU224_06065 PF00437 Type II/IV secretion system protein KU224_06075 PF00072 Response regulator receiver domain KU224_06075 PF00486 Transcriptional regulatory protein, C terminal KU224_06080 PF08521 Two-component sensor kinase N-terminal KU224_06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_06080 PF00512 His Kinase A (phospho-acceptor) domain KU224_06090 PF00293 NUDIX domain KU224_06100 PF00912 Transglycosylase KU224_06100 PF14814 Bifunctional transglycosylase second domain KU224_06100 PF00905 Penicillin binding protein transpeptidase domain KU224_06105 PF01513 ATP-NAD kinase KU224_06110 PF07023 Protein of unknown function (DUF1315) KU224_06115 PF00591 Glycosyl transferase family, a/b domain KU224_06115 PF02885 Glycosyl transferase family, helical bundle domain KU224_06120 PF00375 Sodium:dicarboxylate symporter family KU224_06125 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_06125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_06125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_06130 PF00756 Putative esterase KU224_06135 PF00800 Prephenate dehydratase KU224_06135 PF01817 Chorismate mutase type II KU224_06135 PF01842 ACT domain KU224_06140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KU224_06150 PF01546 Peptidase family M20/M25/M40 KU224_06150 PF07687 Peptidase dimerisation domain KU224_06155 PF12706 Beta-lactamase superfamily domain KU224_06165 PF03883 Peroxide stress protein YaaA KU224_06175 PF05690 Thiazole biosynthesis protein ThiG KU224_06185 PF04241 Protein of unknown function (DUF423) KU224_06190 PF04545 Sigma-70, region 4 KU224_06190 PF04542 Sigma-70 region 2 KU224_06190 PF00140 Sigma-70 factor, region 1.2 KU224_06200 PF00313 'Cold-shock' DNA-binding domain KU224_06205 PF00270 DEAD/DEAH box helicase KU224_06205 PF00271 Helicase conserved C-terminal domain KU224_06215 PF00881 Nitroreductase family KU224_06220 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KU224_06220 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KU224_06240 PF01180 Dihydroorotate dehydrogenase KU224_06245 PF02674 Colicin V production protein KU224_06250 PF00156 Phosphoribosyl transferase domain KU224_06265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU224_06265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU224_06270 PF01435 Peptidase family M48 KU224_06275 PF09424 Yqey-like protein KU224_06280 PF01165 Ribosomal protein S21 KU224_06285 PF00814 Glycoprotease family KU224_06305 PF00069 Protein kinase domain KU224_06330 PF03466 LysR substrate binding domain KU224_06330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_06335 PF00202 Aminotransferase class-III KU224_06340 PF00171 Aldehyde dehydrogenase family KU224_06345 PF00324 Amino acid permease KU224_06375 PF04076 Bacterial OB fold (BOF) protein KU224_06400 PF00561 alpha/beta hydrolase fold KU224_06405 PF03616 Sodium/glutamate symporter KU224_06415 PF07729 FCD domain KU224_06415 PF00392 Bacterial regulatory proteins, gntR family KU224_06470 PF08946 Osmosensory transporter coiled coil KU224_06470 PF00083 Sugar (and other) transporter KU224_06490 PF00155 Aminotransferase class I and II KU224_06495 PF02080 TrkA-C domain KU224_06495 PF06826 Predicted Permease Membrane Region KU224_06505 PF04403 Paraquat-inducible protein A KU224_06510 PF02470 MlaD protein KU224_06525 PF07091 Ribosomal RNA methyltransferase (FmrO) KU224_06545 PF12848 ABC transporter KU224_06545 PF00005 ABC transporter KU224_06550 PF01636 Phosphotransferase enzyme family KU224_06560 PF03050 Transposase IS66 family KU224_06560 PF13817 IS66 C-terminal element KU224_06560 PF13007 Transposase C of IS166 homeodomain KU224_06560 PF13005 zinc-finger binding domain of transposase IS66 KU224_06585 PF13610 DDE domain KU224_06600 PF00375 Sodium:dicarboxylate symporter family KU224_06610 PF16123 Hydroxyacylglutathione hydrolase C-terminus KU224_06610 PF00753 Metallo-beta-lactamase superfamily KU224_06615 PF00528 Binding-protein-dependent transport system inner membrane component KU224_06620 PF00005 ABC transporter KU224_06620 PF09383 NIL domain KU224_06625 PF03180 NLPA lipoprotein KU224_06630 PF02844 Phosphoribosylglycinamide synthetase, N domain KU224_06630 PF02843 Phosphoribosylglycinamide synthetase, C domain KU224_06630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KU224_06635 PF01808 AICARFT/IMPCHase bienzyme KU224_06635 PF02142 MGS-like domain KU224_06640 PF02954 Bacterial regulatory protein, Fis family KU224_06660 PF01134 Glucose inhibited division protein A KU224_06660 PF13932 GidA associated domain KU224_06670 PF14403 Circularly permuted ATP-grasp type 2 KU224_06680 PF01841 Transglutaminase-like superfamily KU224_06680 PF08379 Bacterial transglutaminase-like N-terminal region KU224_06690 PF00842 Alanine racemase, C-terminal domain KU224_06690 PF01168 Alanine racemase, N-terminal domain KU224_06695 PF00772 DnaB-like helicase N terminal domain KU224_06695 PF03796 DnaB-like helicase C terminal domain KU224_06700 PF03948 Ribosomal protein L9, C-terminal domain KU224_06700 PF01281 Ribosomal protein L9, N-terminal domain KU224_06705 PF01084 Ribosomal protein S18 KU224_06710 PF01250 Ribosomal protein S6 KU224_06715 PF01040 UbiA prenyltransferase family KU224_06720 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KU224_06725 PF00510 Cytochrome c oxidase subunit III KU224_06730 PF00115 Cytochrome C and Quinol oxidase polypeptide I KU224_06735 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KU224_06735 PF06481 COX Aromatic Rich Motif KU224_06745 PF02896 PEP-utilising enzyme, TIM barrel domain KU224_06745 PF00391 PEP-utilising enzyme, mobile domain KU224_06745 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KU224_06750 PF03618 Kinase/pyrophosphorylase KU224_06760 PF14883 Hypothetical glycosyl hydrolase family 13 KU224_06760 PF01522 Polysaccharide deacetylase KU224_06765 PF00535 Glycosyl transferase family 2 KU224_06770 PF13994 PgaD-like protein KU224_06780 PF00296 Luciferase-like monooxygenase KU224_06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_06795 PF03466 LysR substrate binding domain KU224_06805 PF00472 RF-1 domain KU224_06805 PF03462 PCRF domain KU224_06810 PF13847 Methyltransferase domain KU224_06810 PF17827 PrmC N-terminal domain KU224_06815 PF00528 Binding-protein-dependent transport system inner membrane component KU224_06820 PF09084 NMT1/THI5 like KU224_06825 PF12833 Helix-turn-helix domain KU224_06830 PF00106 short chain dehydrogenase KU224_06835 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_06835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_06835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_06840 PF00501 AMP-binding enzyme KU224_06840 PF13193 AMP-binding enzyme C-terminal domain KU224_06845 PF01613 Flavin reductase like domain KU224_06850 PF00899 ThiF family KU224_06855 PF03109 ABC1 family KU224_06870 PF03814 Potassium-transporting ATPase A subunit KU224_06880 PF02669 K+-transporting ATPase, c chain KU224_06885 PF02702 Osmosensitive K+ channel His kinase sensor domain KU224_06885 PF13493 Domain of unknown function (DUF4118) KU224_06885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_06885 PF00512 His Kinase A (phospho-acceptor) domain KU224_06890 PF00072 Response regulator receiver domain KU224_06890 PF00486 Transcriptional regulatory protein, C terminal KU224_06895 PF00120 Glutamine synthetase, catalytic domain KU224_06905 PF03232 Ubiquinone biosynthesis protein COQ7 KU224_06910 PF07690 Major Facilitator Superfamily KU224_06915 PF01103 Surface antigen KU224_06915 PF07244 Surface antigen variable number repeat KU224_06915 PF17243 POTRA domain TamA domain 1 KU224_06930 PF00330 Aconitase family (aconitate hydratase) KU224_06930 PF06434 Aconitate hydratase 2 N-terminus KU224_06930 PF11791 Aconitate B N-terminal domain KU224_06940 PF00520 Ion transport protein KU224_06940 PF00027 Cyclic nucleotide-binding domain KU224_06945 PF07690 Major Facilitator Superfamily KU224_06960 PF03466 LysR substrate binding domain KU224_06960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_06965 PF04284 Protein of unknown function (DUF441) KU224_06975 PF01479 S4 domain KU224_06975 PF00849 RNA pseudouridylate synthase KU224_06990 PF01479 S4 domain KU224_06990 PF00849 RNA pseudouridylate synthase KU224_06995 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KU224_07000 PF08676 MutL C terminal dimerisation domain KU224_07000 PF01119 DNA mismatch repair protein, C-terminal domain KU224_07010 PF17209 Hfq protein KU224_07020 PF00881 Nitroreductase family KU224_07030 PF00149 Calcineurin-like phosphoesterase KU224_07035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KU224_07040 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KU224_07040 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU224_07045 PF00117 Glutamine amidotransferase class-I KU224_07045 PF00958 GMP synthase C terminal domain KU224_07045 PF02540 NAD synthase KU224_07050 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KU224_07055 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KU224_07060 PF13520 Amino acid permease KU224_07065 PF00171 Aldehyde dehydrogenase family KU224_07080 PF00465 Iron-containing alcohol dehydrogenase KU224_07085 PF05970 PIF1-like helicase KU224_07085 PF14493 Helix-turn-helix domain KU224_07095 PF06445 GyrI-like small molecule binding domain KU224_07100 PF02110 Hydroxyethylthiazole kinase family KU224_07115 PF01433 Peptidase family M1 domain KU224_07115 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KU224_07115 PF11940 Domain of unknown function (DUF3458) Ig-like fold KU224_07145 PF01817 Chorismate mutase type II KU224_07150 PF01037 Lrp/AsnC ligand binding domain KU224_07160 PF00440 Bacterial regulatory proteins, tetR family KU224_07165 PF00593 TonB dependent receptor KU224_07165 PF07715 TonB-dependent Receptor Plug Domain KU224_07170 PF00924 Mechanosensitive ion channel KU224_07205 PF00593 TonB dependent receptor KU224_07205 PF07715 TonB-dependent Receptor Plug Domain KU224_07225 PF00005 ABC transporter KU224_07225 PF12848 ABC transporter KU224_07230 PF00582 Universal stress protein family KU224_07255 PF00690 Cation transporter/ATPase, N-terminus KU224_07255 PF00689 Cation transporting ATPase, C-terminus KU224_07260 PF02308 MgtC family KU224_07265 PF03594 Benzoate membrane transport protein KU224_07270 PF01037 Lrp/AsnC ligand binding domain KU224_07275 PF01810 LysE type translocator KU224_07280 PF00923 Transaldolase/Fructose-6-phosphate aldolase KU224_07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_07285 PF03466 LysR substrate binding domain KU224_07295 PF02803 Thiolase, C-terminal domain KU224_07295 PF00108 Thiolase, N-terminal domain KU224_07305 PF01575 MaoC like domain KU224_07310 PF00144 Beta-lactamase KU224_07320 PF07690 Major Facilitator Superfamily KU224_07325 PF12170 DNA polymerase III tau subunit V interacting with alpha KU224_07325 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KU224_07325 PF12169 DNA polymerase III subunits gamma and tau domain III KU224_07330 PF05506 Domain of unknown function (DUF756) KU224_07330 PF04185 Phosphoesterase family KU224_07335 PF03061 Thioesterase superfamily KU224_07340 PF00465 Iron-containing alcohol dehydrogenase KU224_07350 PF01451 Low molecular weight phosphotyrosine protein phosphatase KU224_07355 PF01565 FAD binding domain KU224_07355 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KU224_07370 PF01645 Conserved region in glutamate synthase KU224_07440 PF12161 HsdM N-terminal domain KU224_07440 PF02384 N-6 DNA Methylase KU224_07470 PF01555 DNA methylase KU224_07660 PF01476 LysM domain KU224_07660 PF08525 Opacity-associated protein A N-terminal motif KU224_07660 PF01551 Peptidase family M23 KU224_07725 PF12832 MFS_1 like family KU224_07735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU224_07735 PF02785 Biotin carboxylase C-terminal domain KU224_07735 PF00289 Biotin carboxylase, N-terminal domain KU224_07740 PF00364 Biotin-requiring enzyme KU224_07745 PF01220 Dehydroquinase class II KU224_07750 PF13438 Domain of unknown function (DUF4113) KU224_07750 PF00817 impB/mucB/samB family KU224_07750 PF11799 impB/mucB/samB family C-terminal domain KU224_07760 PF00005 ABC transporter KU224_07765 PF00072 Response regulator receiver domain KU224_07765 PF00486 Transcriptional regulatory protein, C terminal KU224_07775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU224_07775 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_07775 PF18267 Rubredoxin NAD+ reductase C-terminal domain KU224_07775 PF13806 Rieske-like [2Fe-2S] domain KU224_07775 PF04324 BFD-like [2Fe-2S] binding domain KU224_07775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU224_07780 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_07780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU224_07780 PF18267 Rubredoxin NAD+ reductase C-terminal domain KU224_07780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU224_07780 PF04324 BFD-like [2Fe-2S] binding domain KU224_07785 PF04324 BFD-like [2Fe-2S] binding domain KU224_07785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU224_07785 PF00384 Molybdopterin oxidoreductase KU224_07785 PF01568 Molydopterin dinucleotide binding domain KU224_07790 PF12804 MobA-like NTP transferase domain KU224_07795 PF01568 Molydopterin dinucleotide binding domain KU224_07795 PF00384 Molybdopterin oxidoreductase KU224_07795 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU224_07800 PF04055 Radical SAM superfamily KU224_07800 PF06463 Molybdenum Cofactor Synthesis C KU224_07810 PF02391 MoaE protein KU224_07815 PF01967 MoaC family KU224_07815 PF00994 Probable molybdopterin binding domain KU224_07820 PF03454 MoeA C-terminal region (domain IV) KU224_07820 PF03453 MoeA N-terminal region (domain I and II) KU224_07820 PF00994 Probable molybdopterin binding domain KU224_07825 PF01638 HxlR-like helix-turn-helix KU224_07830 PF00155 Aminotransferase class I and II KU224_07830 PF00392 Bacterial regulatory proteins, gntR family KU224_07835 PF00892 EamA-like transporter family KU224_07855 PF02635 DsrE/DsrF-like family KU224_07860 PF16363 GDP-mannose 4,6 dehydratase KU224_07865 PF10415 Fumarase C C-terminus KU224_07865 PF00206 Lyase KU224_07885 PF01266 FAD dependent oxidoreductase KU224_07895 PF02542 YgbB family KU224_07905 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KU224_07905 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KU224_07910 PF00440 Bacterial regulatory proteins, tetR family KU224_07915 PF02954 Bacterial regulatory protein, Fis family KU224_07915 PF00072 Response regulator receiver domain KU224_07915 PF00158 Sigma-54 interaction domain KU224_07920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_07920 PF00512 His Kinase A (phospho-acceptor) domain KU224_07920 PF00989 PAS fold KU224_07925 PF04055 Radical SAM superfamily KU224_07925 PF18693 TRAM domain KU224_07925 PF00919 Uncharacterized protein family UPF0004 KU224_07930 PF00696 Amino acid kinase family KU224_07935 PF01765 Ribosome recycling factor KU224_07940 PF01255 Putative undecaprenyl diphosphate synthase KU224_07950 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KU224_07950 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KU224_07950 PF13288 DXP reductoisomerase C-terminal domain KU224_07955 PF13180 PDZ domain KU224_07955 PF17820 PDZ domain KU224_07955 PF02163 Peptidase family M50 KU224_07960 PF07244 Surface antigen variable number repeat KU224_07960 PF01103 Surface antigen KU224_07970 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_07970 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KU224_07975 PF07977 FabA-like domain KU224_07980 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KU224_07980 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_07995 PF02631 RecX family KU224_08000 PF00154 recA bacterial DNA recombination protein KU224_08005 PF01479 S4 domain KU224_08010 PF13419 Haloacid dehalogenase-like hydrolase KU224_08035 PF01037 Lrp/AsnC ligand binding domain KU224_08040 PF00266 Aminotransferase class-V KU224_08045 PF00324 Amino acid permease KU224_08055 PF05922 Peptidase inhibitor I9 KU224_08055 PF00082 Subtilase family KU224_08060 PF00916 Sulfate permease family KU224_08060 PF01740 STAS domain KU224_08065 PF02586 SOS response associated peptidase (SRAP) KU224_08070 PF07995 Glucose / Sorbosone dehydrogenase KU224_08080 PF00563 EAL domain KU224_08080 PF03707 Bacterial signalling protein N terminal repeat KU224_08080 PF00990 Diguanylate cyclase, GGDEF domain KU224_08100 PF02378 Phosphotransferase system, EIIC KU224_08100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KU224_08105 PF00294 pfkB family carbohydrate kinase KU224_08110 PF02896 PEP-utilising enzyme, TIM barrel domain KU224_08110 PF05524 PEP-utilising enzyme, N-terminal KU224_08110 PF00381 PTS HPr component phosphorylation site KU224_08110 PF00391 PEP-utilising enzyme, mobile domain KU224_08110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KU224_08135 PF05525 Branched-chain amino acid transport protein KU224_08140 PF00557 Metallopeptidase family M24 KU224_08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_08145 PF03466 LysR substrate binding domain KU224_08155 PF00462 Glutaredoxin KU224_08160 PF00202 Aminotransferase class-III KU224_08165 PF00478 IMP dehydrogenase / GMP reductase domain KU224_08165 PF00571 CBS domain KU224_08190 PF02881 SRP54-type protein, helical bundle domain KU224_08190 PF00448 SRP54-type protein, GTPase domain KU224_08200 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KU224_08215 PF08173 Membrane bound YbgT-like protein KU224_08220 PF02322 Cytochrome bd terminal oxidase subunit II KU224_08225 PF01654 Cytochrome bd terminal oxidase subunit I KU224_08235 PF07290 Protein of unknown function (DUF1449) KU224_08245 PF00294 pfkB family carbohydrate kinase KU224_08250 PF00593 TonB dependent receptor KU224_08250 PF07715 TonB-dependent Receptor Plug Domain KU224_08255 PF05193 Peptidase M16 inactive domain KU224_08255 PF08367 Peptidase M16C associated KU224_08255 PF00675 Insulinase (Peptidase family M16) KU224_08260 PF02253 Phospholipase A1 KU224_08265 PF02386 Cation transport protein KU224_08270 PF02080 TrkA-C domain KU224_08270 PF02254 TrkA-N domain KU224_08275 PF00291 Pyridoxal-phosphate dependent enzyme KU224_08275 PF00585 C-terminal regulatory domain of Threonine dehydratase KU224_08280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KU224_08295 PF02774 Semialdehyde dehydrogenase, dimerisation domain KU224_08295 PF01118 Semialdehyde dehydrogenase, NAD binding domain KU224_08305 PF02617 ATP-dependent Clp protease adaptor protein ClpS KU224_08310 PF00004 ATPase family associated with various cellular activities (AAA) KU224_08310 PF07724 AAA domain (Cdc48 subfamily) KU224_08310 PF17871 AAA lid domain KU224_08310 PF10431 C-terminal, D2-small domain, of ClpB protein KU224_08310 PF02861 Clp amino terminal domain, pathogenicity island component KU224_08315 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KU224_08320 PF00793 DAHP synthetase I family KU224_08335 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_08335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU224_08365 PF00117 Glutamine amidotransferase class-I KU224_08365 PF06418 CTP synthase N-terminus KU224_08370 PF00793 DAHP synthetase I family KU224_08375 PF00113 Enolase, C-terminal TIM barrel domain KU224_08375 PF03952 Enolase, N-terminal domain KU224_08380 PF04239 Protein of unknown function (DUF421) KU224_08385 PF04977 Septum formation initiator KU224_08390 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KU224_08395 PF01144 Coenzyme A transferase KU224_08400 PF01144 Coenzyme A transferase KU224_08405 PF00108 Thiolase, N-terminal domain KU224_08405 PF02803 Thiolase, C-terminal domain KU224_08410 PF00206 Lyase KU224_08410 PF10397 Adenylosuccinate lyase C-terminus KU224_08415 PF00561 alpha/beta hydrolase fold KU224_08420 PF07690 Major Facilitator Superfamily KU224_08425 PF02627 Carboxymuconolactone decarboxylase family KU224_08430 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KU224_08430 PF00775 Dioxygenase KU224_08435 PF00775 Dioxygenase KU224_08440 PF01487 Type I 3-dehydroquinase KU224_08445 PF05048 Periplasmic copper-binding protein (NosD) KU224_08450 PF04966 Carbohydrate-selective porin, OprB family KU224_08455 PF01011 PQQ enzyme repeat KU224_08455 PF13360 PQQ-like domain KU224_08465 PF04143 Sulphur transport KU224_08475 PF00753 Metallo-beta-lactamase superfamily KU224_08480 PF09339 IclR helix-turn-helix domain KU224_08480 PF01614 Bacterial transcriptional regulator KU224_08485 PF03466 LysR substrate binding domain KU224_08485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_08490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_08490 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_08490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_08505 PF00106 short chain dehydrogenase KU224_08515 PF07690 Major Facilitator Superfamily KU224_08525 PF01425 Amidase KU224_08530 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU224_08545 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU224_08545 PF00355 Rieske [2Fe-2S] domain KU224_08560 PF00111 2Fe-2S iron-sulfur cluster binding domain KU224_08560 PF00175 Oxidoreductase NAD-binding domain KU224_08565 PF01613 Flavin reductase like domain KU224_08570 PF02311 AraC-like ligand binding domain KU224_08570 PF12833 Helix-turn-helix domain KU224_08575 PF01179 Copper amine oxidase, enzyme domain KU224_08575 PF07833 Copper amine oxidase N-terminal domain KU224_08575 PF02727 Copper amine oxidase, N2 domain KU224_08575 PF02728 Copper amine oxidase, N3 domain KU224_08585 PF00171 Aldehyde dehydrogenase family KU224_08590 PF01804 Penicillin amidase KU224_08595 PF12146 Serine aminopeptidase, S33 KU224_08600 PF00108 Thiolase, N-terminal domain KU224_08600 PF02803 Thiolase, C-terminal domain KU224_08605 PF01144 Coenzyme A transferase KU224_08610 PF01144 Coenzyme A transferase KU224_08615 PF04444 Catechol dioxygenase N terminus KU224_08615 PF00775 Dioxygenase KU224_08620 PF02426 Muconolactone delta-isomerase KU224_08625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KU224_08625 PF13378 Enolase C-terminal domain-like KU224_08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_08630 PF03466 LysR substrate binding domain KU224_08640 PF07729 FCD domain KU224_08640 PF00392 Bacterial regulatory proteins, gntR family KU224_08645 PF00920 Dehydratase family KU224_08650 PF07690 Major Facilitator Superfamily KU224_08660 PF00171 Aldehyde dehydrogenase family KU224_08680 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_08680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_08680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_08690 PF02954 Bacterial regulatory protein, Fis family KU224_08690 PF06506 Propionate catabolism activator KU224_08690 PF00158 Sigma-54 interaction domain KU224_08695 PF13193 AMP-binding enzyme C-terminal domain KU224_08695 PF00501 AMP-binding enzyme KU224_08700 PF04341 Protein of unknown function, DUF485 KU224_08705 PF00474 Sodium:solute symporter family KU224_08710 PF08240 Alcohol dehydrogenase GroES-like domain KU224_08710 PF00107 Zinc-binding dehydrogenase KU224_08715 PF00171 Aldehyde dehydrogenase family KU224_08725 PF00561 alpha/beta hydrolase fold KU224_08730 PF00199 Catalase KU224_08730 PF06628 Catalase-related immune-responsive KU224_08745 PF07859 alpha/beta hydrolase fold KU224_08750 PF01047 MarR family KU224_08755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU224_08755 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_08760 PF00106 short chain dehydrogenase KU224_08765 PF01872 RibD C-terminal domain KU224_08770 PF09278 MerR, DNA binding KU224_08770 PF00376 MerR family regulatory protein KU224_08780 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_08790 PF12706 Beta-lactamase superfamily domain KU224_08795 PF08359 YsiA-like protein, C-terminal region KU224_08795 PF00440 Bacterial regulatory proteins, tetR family KU224_08805 PF00857 Isochorismatase family KU224_08810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_08810 PF03466 LysR substrate binding domain KU224_08815 PF07995 Glucose / Sorbosone dehydrogenase KU224_08820 PF02254 TrkA-N domain KU224_08820 PF00999 Sodium/hydrogen exchanger family KU224_08830 PF07687 Peptidase dimerisation domain KU224_08830 PF01546 Peptidase family M20/M25/M40 KU224_08840 PF08479 POTRA domain, ShlB-type KU224_08840 PF17287 POTRA domain KU224_08840 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KU224_08845 PF13018 Extended Signal Peptide of Type V secretion system KU224_08845 PF13332 Hemagglutinin repeat KU224_08845 PF05860 haemagglutination activity domain KU224_08845 PF04829 Pre-toxin domain with VENN motif KU224_08860 PF07690 Major Facilitator Superfamily KU224_08865 PF04909 Amidohydrolase KU224_08875 PF07702 UTRA domain KU224_08875 PF00392 Bacterial regulatory proteins, gntR family KU224_08880 PF08450 SMP-30/Gluconolactonase/LRE-like region KU224_08890 PF03466 LysR substrate binding domain KU224_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_08910 PF07690 Major Facilitator Superfamily KU224_08915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU224_08915 PF01842 ACT domain KU224_08915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU224_08920 PF03737 Aldolase/RraA KU224_08940 PF00529 HlyD membrane-fusion protein of T1SS KU224_08940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU224_08955 PF00171 Aldehyde dehydrogenase family KU224_08960 PF00920 Dehydratase family KU224_08970 PF03466 LysR substrate binding domain KU224_08970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_08975 PF01370 NAD dependent epimerase/dehydratase family KU224_08980 PF07690 Major Facilitator Superfamily KU224_08985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU224_08985 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU224_08990 PF12833 Helix-turn-helix domain KU224_08990 PF06719 AraC-type transcriptional regulator N-terminus KU224_09005 PF00107 Zinc-binding dehydrogenase KU224_09005 PF08240 Alcohol dehydrogenase GroES-like domain KU224_09015 PF01032 FecCD transport family KU224_09020 PF00005 ABC transporter KU224_09040 PF14572 Phosphoribosyl synthetase-associated domain KU224_09040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KU224_09045 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KU224_09115 PF00196 Bacterial regulatory proteins, luxR family KU224_09120 PF01425 Amidase KU224_09125 PF13533 Biotin-lipoyl like KU224_09130 PF07690 Major Facilitator Superfamily KU224_09155 PF01975 Survival protein SurE KU224_09165 PF13291 ACT domain KU224_09165 PF02824 TGS domain KU224_09165 PF04607 Region found in RelA / SpoT proteins KU224_09215 PF12146 Serine aminopeptidase, S33 KU224_09220 PF12833 Helix-turn-helix domain KU224_09220 PF02311 AraC-like ligand binding domain KU224_09230 PF16527 Two-component sensor protein CpxA, periplasmic domain KU224_09230 PF00672 HAMP domain KU224_09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_09230 PF00512 His Kinase A (phospho-acceptor) domain KU224_09235 PF00072 Response regulator receiver domain KU224_09235 PF00486 Transcriptional regulatory protein, C terminal KU224_09240 PF00529 HlyD membrane-fusion protein of T1SS KU224_09240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU224_09245 PF00873 AcrB/AcrD/AcrF family KU224_09250 PF02321 Outer membrane efflux protein KU224_09255 PF12146 Serine aminopeptidase, S33 KU224_09260 PF00743 Flavin-binding monooxygenase-like KU224_09265 PF01593 Flavin containing amine oxidoreductase KU224_09280 PF01266 FAD dependent oxidoreductase KU224_09380 PF16970 Type-1 fimbrial protein, A KU224_09390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KU224_09390 PF02753 Pili assembly chaperone PapD, C-terminal domain KU224_09395 PF00577 Outer membrane usher protein KU224_09395 PF13954 PapC N-terminal domain KU224_09395 PF13953 PapC C-terminal domain KU224_09400 PF00419 Fimbrial protein KU224_09410 PF00107 Zinc-binding dehydrogenase KU224_09410 PF08240 Alcohol dehydrogenase GroES-like domain KU224_09420 PF00199 Catalase KU224_09435 PF13091 PLD-like domain KU224_09455 PF01244 Membrane dipeptidase (Peptidase family M19) KU224_09460 PF13186 Iron-sulfur cluster-binding domain KU224_09460 PF04055 Radical SAM superfamily KU224_09465 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KU224_09470 PF03070 TENA/THI-4/PQQC family KU224_09475 PF12706 Beta-lactamase superfamily domain KU224_09480 PF08042 PqqA family KU224_09485 PF02503 Polyphosphate kinase middle domain KU224_09485 PF13090 Polyphosphate kinase C-terminal domain 2 KU224_09485 PF17941 Polyphosphate kinase C-terminal domain 1 KU224_09485 PF13089 Polyphosphate kinase N-terminal domain KU224_09490 PF00149 Calcineurin-like phosphoesterase KU224_09500 PF00550 Phosphopantetheine attachment site KU224_09500 PF00857 Isochorismatase family KU224_09505 PF00106 short chain dehydrogenase KU224_09510 PF00005 ABC transporter KU224_09510 PF03459 TOBE domain KU224_09515 PF00528 Binding-protein-dependent transport system inner membrane component KU224_09525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_09525 PF03459 TOBE domain KU224_09530 PF00355 Rieske [2Fe-2S] domain KU224_09530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU224_09535 PF00866 Ring hydroxylating beta subunit KU224_09540 PF00970 Oxidoreductase FAD-binding domain KU224_09540 PF00111 2Fe-2S iron-sulfur cluster binding domain KU224_09540 PF00175 Oxidoreductase NAD-binding domain KU224_09545 PF14525 AraC-binding-like domain KU224_09545 PF12833 Helix-turn-helix domain KU224_09555 PF01613 Flavin reductase like domain KU224_09570 PF01738 Dienelactone hydrolase family KU224_09580 PF12833 Helix-turn-helix domain KU224_09580 PF06719 AraC-type transcriptional regulator N-terminus KU224_09605 PF03466 LysR substrate binding domain KU224_09605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_09610 PF01144 Coenzyme A transferase KU224_09615 PF01144 Coenzyme A transferase KU224_09620 PF02667 Short chain fatty acid transporter KU224_09625 PF02803 Thiolase, C-terminal domain KU224_09625 PF00108 Thiolase, N-terminal domain KU224_09630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_09630 PF03466 LysR substrate binding domain KU224_09635 PF03466 LysR substrate binding domain KU224_09635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_09650 PF00206 Lyase KU224_09650 PF10415 Fumarase C C-terminus KU224_09655 PF00593 TonB dependent receptor KU224_09655 PF07715 TonB-dependent Receptor Plug Domain KU224_09660 PF00083 Sugar (and other) transporter KU224_09675 PF00005 ABC transporter KU224_09680 PF00528 Binding-protein-dependent transport system inner membrane component KU224_09685 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KU224_09700 PF07702 UTRA domain KU224_09700 PF00392 Bacterial regulatory proteins, gntR family KU224_09710 PF02525 Flavodoxin-like fold KU224_09715 PF01638 HxlR-like helix-turn-helix KU224_09720 PF06445 GyrI-like small molecule binding domain KU224_09720 PF12833 Helix-turn-helix domain KU224_09735 PF01925 Sulfite exporter TauE/SafE KU224_09740 PF04273 Putative phosphatase (DUF442) KU224_09740 PF00753 Metallo-beta-lactamase superfamily KU224_09745 PF00753 Metallo-beta-lactamase superfamily KU224_09745 PF04273 Putative phosphatase (DUF442) KU224_09750 PF00158 Sigma-54 interaction domain KU224_09750 PF00072 Response regulator receiver domain KU224_09750 PF02954 Bacterial regulatory protein, Fis family KU224_09755 PF01062 Bestrophin, RFP-TM, chloride channel KU224_09760 PF00107 Zinc-binding dehydrogenase KU224_09760 PF08240 Alcohol dehydrogenase GroES-like domain KU224_09765 PF00106 short chain dehydrogenase KU224_09770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU224_09770 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_09775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU224_09775 PF00364 Biotin-requiring enzyme KU224_09775 PF02817 e3 binding domain KU224_09780 PF02779 Transketolase, pyrimidine binding domain KU224_09780 PF02780 Transketolase, C-terminal domain KU224_09785 PF00676 Dehydrogenase E1 component KU224_09790 PF04055 Radical SAM superfamily KU224_09805 PF08448 PAS fold KU224_09805 PF00990 Diguanylate cyclase, GGDEF domain KU224_09810 PF01264 Chorismate synthase KU224_09815 PF05175 Methyltransferase small domain KU224_09820 PF00291 Pyridoxal-phosphate dependent enzyme KU224_09830 PF00004 ATPase family associated with various cellular activities (AAA) KU224_09830 PF17862 AAA+ lid domain KU224_09830 PF01434 Peptidase family M41 KU224_09840 PF05166 YcgL domain KU224_09860 PF01612 3'-5' exonuclease KU224_09860 PF00570 HRDC domain KU224_09865 PF02132 RecR protein KU224_09865 PF13662 Toprim domain KU224_09870 PF02575 YbaB/EbfC DNA-binding family KU224_09880 PF01053 Cys/Met metabolism PLP-dependent enzyme KU224_09885 PF00561 alpha/beta hydrolase fold KU224_09890 PF08241 Methyltransferase domain KU224_09920 PF01230 HIT domain KU224_09955 PF00005 ABC transporter KU224_09960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU224_09970 PF02684 Lipid-A-disaccharide synthetase KU224_09975 PF07715 TonB-dependent Receptor Plug Domain KU224_09975 PF00593 TonB dependent receptor KU224_09995 PF01925 Sulfite exporter TauE/SafE KU224_10000 PF00793 DAHP synthetase I family KU224_10005 PF02654 Cobalamin-5-phosphate synthase KU224_10020 PF02277 Phosphoribosyltransferase KU224_10025 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KU224_10035 PF13419 Haloacid dehalogenase-like hydrolase KU224_10060 PF00593 TonB dependent receptor KU224_10060 PF07715 TonB-dependent Receptor Plug Domain KU224_10075 PF06276 Ferric iron reductase FhuF-like transporter KU224_10075 PF04183 IucA / IucC family KU224_10080 PF06276 Ferric iron reductase FhuF-like transporter KU224_10080 PF04183 IucA / IucC family KU224_10085 PF07690 Major Facilitator Superfamily KU224_10090 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KU224_10095 PF06276 Ferric iron reductase FhuF-like transporter KU224_10095 PF04183 IucA / IucC family KU224_10100 PF04073 Aminoacyl-tRNA editing domain KU224_10110 PF03109 ABC1 family KU224_10115 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_10115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_10115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_10120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_10120 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_10120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_10125 PF00487 Fatty acid desaturase KU224_10130 PF12852 Cupin KU224_10130 PF12833 Helix-turn-helix domain KU224_10135 PF00639 PPIC-type PPIASE domain KU224_10135 PF09312 SurA N-terminal domain KU224_10140 PF00216 Bacterial DNA-binding protein KU224_10155 PF02082 Transcriptional regulator KU224_10160 PF00266 Aminotransferase class-V KU224_10165 PF01592 NifU-like N terminal domain KU224_10170 PF01521 Iron-sulphur cluster biosynthesis KU224_10175 PF00226 DnaJ domain KU224_10175 PF07743 HSCB C-terminal oligomerisation domain KU224_10180 PF00012 Hsp70 protein KU224_10185 PF00111 2Fe-2S iron-sulfur cluster binding domain KU224_10190 PF00211 Adenylate and Guanylate cyclase catalytic domain KU224_10200 PF02559 CarD-like/TRCF domain KU224_10200 PF00270 DEAD/DEAH box helicase KU224_10200 PF00271 Helicase conserved C-terminal domain KU224_10200 PF03461 TRCF domain KU224_10200 PF17757 UvrB interaction domain KU224_10220 PF03737 Aldolase/RraA KU224_10225 PF13460 NAD(P)H-binding KU224_10230 PF01649 Ribosomal protein S20 KU224_10240 PF00459 Inositol monophosphatase family KU224_10255 PF00005 ABC transporter KU224_10255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KU224_10260 PF00528 Binding-protein-dependent transport system inner membrane component KU224_10265 PF00528 Binding-protein-dependent transport system inner membrane component KU224_10270 PF01432 Peptidase family M3 KU224_10290 PF07715 TonB-dependent Receptor Plug Domain KU224_10290 PF00593 TonB dependent receptor KU224_10300 PF01618 MotA/TolQ/ExbB proton channel family KU224_10305 PF02472 Biopolymer transport protein ExbD/TolR KU224_10310 PF02472 Biopolymer transport protein ExbD/TolR KU224_10320 PF01274 Malate synthase KU224_10325 PF03969 AFG1-like ATPase KU224_10335 PF00743 Flavin-binding monooxygenase-like KU224_10345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KU224_10355 PF00216 Bacterial DNA-binding protein KU224_10360 PF00575 S1 RNA binding domain KU224_10365 PF02224 Cytidylate kinase KU224_10375 PF14437 MafB19-like deaminase KU224_10385 PF03167 Uracil DNA glycosylase superfamily KU224_10395 PF03934 Type II secretion system (T2SS), protein K KU224_10400 PF11612 Type II secretion system (T2SS), protein J KU224_10400 PF07963 Prokaryotic N-terminal methylation motif KU224_10405 PF07963 Prokaryotic N-terminal methylation motif KU224_10405 PF02501 Type II secretion system (T2SS), protein I KU224_10420 PF01026 TatD related DNase KU224_10430 PF09115 DNA polymerase III, delta subunit, C terminal KU224_10435 PF02348 Cytidylyltransferase KU224_10440 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KU224_10445 PF00664 ABC transporter transmembrane region KU224_10445 PF00005 ABC transporter KU224_10455 PF01618 MotA/TolQ/ExbB proton channel family KU224_10460 PF17762 HTH domain found in ParB protein KU224_10460 PF02195 ParB-like nuclease domain KU224_10465 PF13614 AAA domain KU224_10470 PF02527 rRNA small subunit methyltransferase G KU224_10475 PF00483 Nucleotidyl transferase KU224_10480 PF01636 Phosphotransferase enzyme family KU224_10485 PF03968 OstA-like protein KU224_10485 PF04453 LPS transport system D KU224_10490 PF00639 PPIC-type PPIASE domain KU224_10490 PF09312 SurA N-terminal domain KU224_10495 PF01116 Fructose-bisphosphate aldolase class-II KU224_10505 PF00162 Phosphoglycerate kinase KU224_10515 PF02545 Maf-like protein KU224_10520 PF08007 Cupin superfamily protein KU224_10540 PF00375 Sodium:dicarboxylate symporter family KU224_10545 PF06912 Protein of unknown function (DUF1275) KU224_10550 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KU224_10555 PF00005 ABC transporter KU224_10555 PF00664 ABC transporter transmembrane region KU224_10565 PF12833 Helix-turn-helix domain KU224_10565 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KU224_10570 PF01597 Glycine cleavage H-protein KU224_10575 PF02146 Sir2 family KU224_10580 PF00474 Sodium:solute symporter family KU224_10585 PF01037 Lrp/AsnC ligand binding domain KU224_10590 PF14850 DNA-binding domain of Proline dehydrogenase KU224_10590 PF00171 Aldehyde dehydrogenase family KU224_10590 PF01619 Proline dehydrogenase KU224_10590 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KU224_10595 PF04229 GrpB protein KU224_10600 PF05958 tRNA (Uracil-5-)-methyltransferase KU224_10610 PF09992 Phosphodiester glycosidase KU224_10620 PF04264 YceI-like domain KU224_10630 PF02779 Transketolase, pyrimidine binding domain KU224_10630 PF00456 Transketolase, thiamine diphosphate binding domain KU224_10630 PF02780 Transketolase, C-terminal domain KU224_10635 PF02772 S-adenosylmethionine synthetase, central domain KU224_10635 PF02773 S-adenosylmethionine synthetase, C-terminal domain KU224_10635 PF00438 S-adenosylmethionine synthetase, N-terminal domain KU224_10655 PF00905 Penicillin binding protein transpeptidase domain KU224_10670 PF02075 Crossover junction endodeoxyribonuclease RuvC KU224_10675 PF03853 YjeF-related protein N-terminus KU224_10675 PF01256 Carbohydrate kinase KU224_10680 PF08331 Domain of unknown function (DUF1730) KU224_10685 PF04055 Radical SAM superfamily KU224_10685 PF06968 Biotin and Thiamin Synthesis associated domain KU224_10700 PF16970 Type-1 fimbrial protein, A KU224_10705 PF02753 Pili assembly chaperone PapD, C-terminal domain KU224_10705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KU224_10710 PF13953 PapC C-terminal domain KU224_10710 PF13954 PapC N-terminal domain KU224_10710 PF00577 Outer membrane usher protein KU224_10730 PF00892 EamA-like transporter family KU224_10740 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU224_10750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_10750 PF03466 LysR substrate binding domain KU224_10770 PF00440 Bacterial regulatory proteins, tetR family KU224_10780 PF01709 Transcriptional regulator KU224_10785 PF01037 Lrp/AsnC ligand binding domain KU224_10795 PF00005 ABC transporter KU224_10800 PF00528 Binding-protein-dependent transport system inner membrane component KU224_10805 PF00528 Binding-protein-dependent transport system inner membrane component KU224_10820 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU224_10820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_10830 PF00296 Luciferase-like monooxygenase KU224_10835 PF03180 NLPA lipoprotein KU224_10840 PF03180 NLPA lipoprotein KU224_10845 PF00005 ABC transporter KU224_10845 PF09383 NIL domain KU224_10850 PF00528 Binding-protein-dependent transport system inner membrane component KU224_10855 PF01926 50S ribosome-binding GTPase KU224_10855 PF06071 Protein of unknown function (DUF933) KU224_10880 PF03591 AzlC protein KU224_10885 PF05437 Branched-chain amino acid transport protein (AzlD) KU224_10895 PF02222 ATP-grasp domain KU224_10900 PF01909 Nucleotidyltransferase domain KU224_10900 PF08335 GlnD PII-uridylyltransferase KU224_10900 PF01966 HD domain KU224_10905 PF00155 Aminotransferase class I and II KU224_10915 PF12852 Cupin KU224_10915 PF12833 Helix-turn-helix domain KU224_10925 PF01641 SelR domain KU224_10930 PF00155 Aminotransferase class I and II KU224_10935 PF00375 Sodium:dicarboxylate symporter family KU224_10940 PF17763 Glutaminase/Asparaginase C-terminal domain KU224_10940 PF00710 Asparaginase, N-terminal KU224_10945 PF01336 OB-fold nucleic acid binding domain KU224_10945 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KU224_10945 PF07733 Bacterial DNA polymerase III alpha NTPase domain KU224_10945 PF14579 Helix-hairpin-helix motif KU224_10945 PF02811 PHP domain KU224_10950 PF00588 SpoU rRNA Methylase family KU224_10955 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_10970 PF13192 Thioredoxin domain KU224_10970 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_10985 PF03466 LysR substrate binding domain KU224_10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_10990 PF01758 Sodium Bile acid symporter family KU224_10995 PF01022 Bacterial regulatory protein, arsR family KU224_11000 PF03960 ArsC family KU224_11010 PF13382 Adenine deaminase C-terminal domain KU224_11010 PF01979 Amidohydrolase family KU224_11020 PF03466 LysR substrate binding domain KU224_11020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11030 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU224_11035 PF01177 Asp/Glu/Hydantoin racemase KU224_11040 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KU224_11045 PF00528 Binding-protein-dependent transport system inner membrane component KU224_11050 PF00005 ABC transporter KU224_11055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KU224_11065 PF00083 Sugar (and other) transporter KU224_11070 PF00296 Luciferase-like monooxygenase KU224_11075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_11075 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_11075 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU224_11085 PF01654 Cytochrome bd terminal oxidase subunit I KU224_11090 PF02322 Cytochrome bd terminal oxidase subunit II KU224_11100 PF00392 Bacterial regulatory proteins, gntR family KU224_11100 PF00155 Aminotransferase class I and II KU224_11105 PF03466 LysR substrate binding domain KU224_11105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11120 PF00698 Acyl transferase domain KU224_11125 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KU224_11135 PF01039 Carboxyl transferase domain KU224_11140 PF06857 Malonate decarboxylase delta subunit (MdcD) KU224_11145 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KU224_11150 PF16957 Malonate decarboxylase, alpha subunit, transporter KU224_11155 PF07690 Major Facilitator Superfamily KU224_11170 PF00392 Bacterial regulatory proteins, gntR family KU224_11170 PF00155 Aminotransferase class I and II KU224_11175 PF04172 LrgB-like family KU224_11180 PF03788 LrgA family KU224_11185 PF03466 LysR substrate binding domain KU224_11185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11190 PF14834 Glutathione S-transferase, C-terminal domain KU224_11190 PF02798 Glutathione S-transferase, N-terminal domain KU224_11195 PF02798 Glutathione S-transferase, N-terminal domain KU224_11200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11200 PF03466 LysR substrate binding domain KU224_11210 PF00581 Rhodanese-like domain KU224_11215 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_11225 PF00266 Aminotransferase class-V KU224_11235 PF01810 LysE type translocator KU224_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11240 PF03466 LysR substrate binding domain KU224_11250 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU224_11255 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU224_11260 PF00005 ABC transporter KU224_11265 PF00528 Binding-protein-dependent transport system inner membrane component KU224_11270 PF00528 Binding-protein-dependent transport system inner membrane component KU224_11285 PF00072 Response regulator receiver domain KU224_11290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_11290 PF00512 His Kinase A (phospho-acceptor) domain KU224_11290 PF09308 LuxQ, periplasmic KU224_11290 PF00072 Response regulator receiver domain KU224_11300 PF01037 Lrp/AsnC ligand binding domain KU224_11300 PF13404 AsnC-type helix-turn-helix domain KU224_11310 PF00717 Peptidase S24-like KU224_11335 PF00199 Catalase KU224_11335 PF06628 Catalase-related immune-responsive KU224_11335 PF18011 C-terminal domain found in long catalases KU224_11345 PF00994 Probable molybdopterin binding domain KU224_11345 PF18146 Damage-inducible protein CinA KH domain KU224_11345 PF02464 Competence-damaged protein KU224_11380 PF03466 LysR substrate binding domain KU224_11380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11400 PF00501 AMP-binding enzyme KU224_11400 PF13193 AMP-binding enzyme C-terminal domain KU224_11405 PF00440 Bacterial regulatory proteins, tetR family KU224_11410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_11410 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_11410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_11415 PF01039 Carboxyl transferase domain KU224_11420 PF00378 Enoyl-CoA hydratase/isomerase KU224_11425 PF02785 Biotin carboxylase C-terminal domain KU224_11425 PF00289 Biotin carboxylase, N-terminal domain KU224_11425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU224_11425 PF18140 Propionyl-coenzyme A carboxylase BT domain KU224_11425 PF00364 Biotin-requiring enzyme KU224_11430 PF00682 HMGL-like KU224_11435 PF03466 LysR substrate binding domain KU224_11435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11450 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU224_11450 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_11450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_11450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_11460 PF07690 Major Facilitator Superfamily KU224_11470 PF01144 Coenzyme A transferase KU224_11475 PF01144 Coenzyme A transferase KU224_11480 PF07690 Major Facilitator Superfamily KU224_11485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_11485 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_11485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_11490 PF00378 Enoyl-CoA hydratase/isomerase KU224_11500 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU224_11500 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU224_11500 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KU224_11505 PF02803 Thiolase, C-terminal domain KU224_11505 PF00108 Thiolase, N-terminal domain KU224_11510 PF09339 IclR helix-turn-helix domain KU224_11515 PF07690 Major Facilitator Superfamily KU224_11520 PF03060 Nitronate monooxygenase KU224_11525 PF00378 Enoyl-CoA hydratase/isomerase KU224_11530 PF09339 IclR helix-turn-helix domain KU224_11535 PF02515 CoA-transferase family III KU224_11540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_11540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_11540 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_11545 PF07690 Major Facilitator Superfamily KU224_11550 PF13419 Haloacid dehalogenase-like hydrolase KU224_11555 PF00266 Aminotransferase class-V KU224_11560 PF01266 FAD dependent oxidoreductase KU224_11565 PF00528 Binding-protein-dependent transport system inner membrane component KU224_11570 PF00005 ABC transporter KU224_11570 PF08402 TOBE domain KU224_11580 PF00392 Bacterial regulatory proteins, gntR family KU224_11580 PF07702 UTRA domain KU224_11585 PF01494 FAD binding domain KU224_11590 PF09339 IclR helix-turn-helix domain KU224_11590 PF01614 Bacterial transcriptional regulator KU224_11595 PF02525 Flavodoxin-like fold KU224_11600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11600 PF03466 LysR substrate binding domain KU224_11605 PF02627 Carboxymuconolactone decarboxylase family KU224_11610 PF00171 Aldehyde dehydrogenase family KU224_11620 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU224_11630 PF00171 Aldehyde dehydrogenase family KU224_11635 PF00296 Luciferase-like monooxygenase KU224_11640 PF01613 Flavin reductase like domain KU224_11645 PF12697 Alpha/beta hydrolase family KU224_11665 PF01292 Prokaryotic cytochrome b561 KU224_11670 PF00199 Catalase KU224_11705 PF03061 Thioesterase superfamily KU224_11710 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_11715 PF07848 PaaX-like protein KU224_11715 PF08223 PaaX-like protein C-terminal domain KU224_11720 PF00501 AMP-binding enzyme KU224_11720 PF14535 AMP-binding enzyme C-terminal domain KU224_11725 PF02803 Thiolase, C-terminal domain KU224_11725 PF00108 Thiolase, N-terminal domain KU224_11730 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KU224_11730 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU224_11730 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU224_11735 PF00378 Enoyl-CoA hydratase/isomerase KU224_11740 PF00378 Enoyl-CoA hydratase/isomerase KU224_11745 PF00175 Oxidoreductase NAD-binding domain KU224_11745 PF00111 2Fe-2S iron-sulfur cluster binding domain KU224_11745 PF00970 Oxidoreductase FAD-binding domain KU224_11750 PF01883 Iron-sulfur cluster assembly protein KU224_11755 PF05138 Phenylacetic acid catabolic protein KU224_11760 PF06243 Phenylacetic acid degradation B KU224_11765 PF05138 Phenylacetic acid catabolic protein KU224_11770 PF01575 MaoC like domain KU224_11770 PF00171 Aldehyde dehydrogenase family KU224_11775 PF03315 Serine dehydratase beta chain KU224_11775 PF03313 Serine dehydratase alpha chain KU224_11780 PF13520 Amino acid permease KU224_11785 PF00171 Aldehyde dehydrogenase family KU224_11790 PF00083 Sugar (and other) transporter KU224_11800 PF04324 BFD-like [2Fe-2S] binding domain KU224_11800 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_11810 PF01266 FAD dependent oxidoreductase KU224_11815 PF05544 Proline racemase KU224_11820 PF00392 Bacterial regulatory proteins, gntR family KU224_11830 PF00701 Dihydrodipicolinate synthetase family KU224_11840 PF00376 MerR family regulatory protein KU224_11840 PF09278 MerR, DNA binding KU224_11855 PF02677 Epoxyqueuosine reductase QueH KU224_11870 PF07690 Major Facilitator Superfamily KU224_11875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KU224_11885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_11885 PF03466 LysR substrate binding domain KU224_11905 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KU224_11910 PF06812 ImpA, N-terminal, type VI secretion system KU224_11915 PF00004 ATPase family associated with various cellular activities (AAA) KU224_11915 PF07724 AAA domain (Cdc48 subfamily) KU224_11915 PF10431 C-terminal, D2-small domain, of ClpB protein KU224_11915 PF17871 AAA lid domain KU224_11925 PF00691 OmpA family KU224_11925 PF01389 OmpA-like transmembrane domain KU224_11935 PF06744 Type VI secretion protein IcmF C-terminal KU224_11935 PF06761 Intracellular multiplication and human macrophage-killing KU224_11935 PF14331 ImcF-related N-terminal domain KU224_11950 PF05947 Type VI secretion system, TssF KU224_11965 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KU224_11990 PF00005 ABC transporter KU224_11995 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU224_12000 PF01425 Amidase KU224_12005 PF08753 NikR C terminal nickel binding domain KU224_12005 PF01402 Ribbon-helix-helix protein, copG family KU224_12025 PF02525 Flavodoxin-like fold KU224_12030 PF00289 Biotin carboxylase, N-terminal domain KU224_12030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU224_12030 PF02785 Biotin carboxylase C-terminal domain KU224_12045 PF08240 Alcohol dehydrogenase GroES-like domain KU224_12045 PF13823 Alcohol dehydrogenase GroES-associated KU224_12045 PF00107 Zinc-binding dehydrogenase KU224_12055 PF00440 Bacterial regulatory proteins, tetR family KU224_12075 PF00654 Voltage gated chloride channel KU224_12080 PF00364 Biotin-requiring enzyme KU224_12080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU224_12080 PF02785 Biotin carboxylase C-terminal domain KU224_12080 PF00289 Biotin carboxylase, N-terminal domain KU224_12090 PF07286 Protein of unknown function (DUF1445) KU224_12095 PF03746 LamB/YcsF family KU224_12100 PF01566 Natural resistance-associated macrophage protein KU224_12105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_12105 PF03466 LysR substrate binding domain KU224_12120 PF03527 RHS protein KU224_12120 PF05593 RHS Repeat KU224_12125 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU224_12125 PF13296 Putative type VI secretion system Rhs element Vgr KU224_12125 PF04717 Type VI secretion system, phage-baseplate injector KU224_12135 PF13419 Haloacid dehalogenase-like hydrolase KU224_12155 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU224_12155 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU224_12175 PF07690 Major Facilitator Superfamily KU224_12185 PF03279 Bacterial lipid A biosynthesis acyltransferase KU224_12190 PF00563 EAL domain KU224_12190 PF00990 Diguanylate cyclase, GGDEF domain KU224_12190 PF03707 Bacterial signalling protein N terminal repeat KU224_12195 PF00892 EamA-like transporter family KU224_12200 PF01037 Lrp/AsnC ligand binding domain KU224_12205 PF01624 MutS domain I KU224_12205 PF05188 MutS domain II KU224_12205 PF05192 MutS domain III KU224_12205 PF00488 MutS domain V KU224_12205 PF05190 MutS family domain IV KU224_12215 PF00037 4Fe-4S binding domain KU224_12215 PF11953 Domain of unknown function (DUF3470) KU224_12225 PF01596 O-methyltransferase KU224_12235 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_12240 PF01205 Uncharacterized protein family UPF0029 KU224_12250 PF00664 ABC transporter transmembrane region KU224_12250 PF00005 ABC transporter KU224_12250 PF03412 Peptidase C39 family KU224_12255 PF02321 Outer membrane efflux protein KU224_12260 PF00005 ABC transporter KU224_12260 PF12399 Branched-chain amino acid ATP-binding cassette transporter KU224_12265 PF03968 OstA-like protein KU224_12280 PF00571 CBS domain KU224_12280 PF01380 SIS domain KU224_12285 PF01406 tRNA synthetases class I (C) catalytic domain KU224_12285 PF09190 DALR domain KU224_12310 PF01638 HxlR-like helix-turn-helix KU224_12315 PF07690 Major Facilitator Superfamily KU224_12340 PF03807 NADP oxidoreductase coenzyme F420-dependent KU224_12340 PF14748 Pyrroline-5-carboxylate reductase dimerisation KU224_12350 PF00313 'Cold-shock' DNA-binding domain KU224_12355 PF01810 LysE type translocator KU224_12385 PF02601 Exonuclease VII, large subunit KU224_12385 PF13742 OB-fold nucleic acid binding domain KU224_12420 PF09278 MerR, DNA binding KU224_12420 PF00376 MerR family regulatory protein KU224_12425 PF00403 Heavy-metal-associated domain KU224_12430 PF00403 Heavy-metal-associated domain KU224_12435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_12435 PF03466 LysR substrate binding domain KU224_12440 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU224_12440 PF00355 Rieske [2Fe-2S] domain KU224_12445 PF00866 Ring hydroxylating beta subunit KU224_12450 PF00970 Oxidoreductase FAD-binding domain KU224_12450 PF00111 2Fe-2S iron-sulfur cluster binding domain KU224_12450 PF00175 Oxidoreductase NAD-binding domain KU224_12455 PF00106 short chain dehydrogenase KU224_12460 PF03594 Benzoate membrane transport protein KU224_12465 PF07690 Major Facilitator Superfamily KU224_12475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KU224_12475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KU224_12480 PF11898 Domain of unknown function (DUF3418) KU224_12480 PF04408 Helicase associated domain (HA2) KU224_12480 PF00271 Helicase conserved C-terminal domain KU224_12480 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KU224_12480 PF00270 DEAD/DEAH box helicase KU224_12485 PF10417 C-terminal domain of 1-Cys peroxiredoxin KU224_12485 PF00578 AhpC/TSA family KU224_12505 PF13192 Thioredoxin domain KU224_12505 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_12515 PF02798 Glutathione S-transferase, N-terminal domain KU224_12515 PF00043 Glutathione S-transferase, C-terminal domain KU224_12525 PF02390 Putative methyltransferase KU224_12530 PF13417 Glutathione S-transferase, N-terminal domain KU224_12530 PF00043 Glutathione S-transferase, C-terminal domain KU224_12540 PF13488 Glycine zipper KU224_12540 PF00691 OmpA family KU224_12545 PF01979 Amidohydrolase family KU224_12550 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KU224_12550 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KU224_12560 PF10672 S-adenosylmethionine-dependent methyltransferase KU224_12560 PF02926 THUMP domain KU224_12560 PF01170 Putative RNA methylase family UPF0020 KU224_12575 PF10431 C-terminal, D2-small domain, of ClpB protein KU224_12575 PF02861 Clp amino terminal domain, pathogenicity island component KU224_12575 PF17871 AAA lid domain KU224_12575 PF07724 AAA domain (Cdc48 subfamily) KU224_12575 PF00004 ATPase family associated with various cellular activities (AAA) KU224_12590 PF02566 OsmC-like protein KU224_12600 PF00027 Cyclic nucleotide-binding domain KU224_12600 PF13545 Crp-like helix-turn-helix domain KU224_12610 PF00248 Aldo/keto reductase family KU224_12625 PF00709 Adenylosuccinate synthetase KU224_12630 PF13393 Histidyl-tRNA synthetase KU224_12635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KU224_12635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KU224_12640 PF01411 tRNA synthetases class II (A) KU224_12640 PF02272 DHHA1 domain KU224_12640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KU224_12645 PF00696 Amino acid kinase family KU224_12645 PF01842 ACT domain KU224_12645 PF13840 ACT domain KU224_12650 PF02599 Global regulator protein family KU224_12655 PF01351 Ribonuclease HII KU224_12665 PF01292 Prokaryotic cytochrome b561 KU224_12670 PF00962 Adenosine/AMP deaminase KU224_12675 PF00860 Permease family KU224_12685 PF00743 Flavin-binding monooxygenase-like KU224_12690 PF00106 short chain dehydrogenase KU224_12700 PF02678 Pirin KU224_12700 PF17954 Quercetinase C-terminal cupin domain KU224_12705 PF17932 Tetracyclin repressor-like, C-terminal domain KU224_12705 PF00440 Bacterial regulatory proteins, tetR family KU224_12710 PF13610 DDE domain KU224_12725 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_12725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU224_12730 PF00764 Arginosuccinate synthase KU224_12735 PF00563 EAL domain KU224_12735 PF01590 GAF domain KU224_12735 PF00990 Diguanylate cyclase, GGDEF domain KU224_12735 PF00360 Phytochrome region KU224_12740 PF01979 Amidohydrolase family KU224_12745 PF00929 Exonuclease KU224_12755 PF00593 TonB dependent receptor KU224_12755 PF07715 TonB-dependent Receptor Plug Domain KU224_12760 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_12760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU224_12765 PF00005 ABC transporter KU224_12765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KU224_12770 PF00528 Binding-protein-dependent transport system inner membrane component KU224_12770 PF12911 N-terminal TM domain of oligopeptide transport permease C KU224_12775 PF00528 Binding-protein-dependent transport system inner membrane component KU224_12780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KU224_12785 PF01476 LysM domain KU224_12785 PF01464 Transglycosylase SLT domain KU224_12785 PF01476 LysM domain KU224_12785 PF01464 Transglycosylase SLT domain KU224_12790 PF00929 Exonuclease KU224_12800 PF00293 NUDIX domain KU224_12800 PF09297 NADH pyrophosphatase zinc ribbon domain KU224_12810 PF04972 BON domain KU224_12815 PF02021 Uncharacterised protein family UPF0102 KU224_12820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KU224_12830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_12830 PF03466 LysR substrate binding domain KU224_12835 PF01810 LysE type translocator KU224_12845 PF13411 MerR HTH family regulatory protein KU224_12855 PF01494 FAD binding domain KU224_12860 PF01494 FAD binding domain KU224_12865 PF00557 Metallopeptidase family M24 KU224_12865 PF05195 Aminopeptidase P, N-terminal domain KU224_12905 PF00884 Sulfatase KU224_12905 PF08019 Phosphoethanolamine transferase EptA/EptB KU224_12950 PF01551 Peptidase family M23 KU224_12950 PF01476 LysM domain KU224_12950 PF08525 Opacity-associated protein A N-terminal motif KU224_13280 PF01812 5-formyltetrahydrofolate cyclo-ligase family KU224_13285 PF04355 SmpA / OmlA family KU224_13285 PF00691 OmpA family KU224_13290 PF03895 YadA-like membrane anchor domain KU224_13290 PF13018 Extended Signal Peptide of Type V secretion system KU224_13290 PF05658 Head domain of trimeric autotransporter adhesin KU224_13290 PF05662 Coiled stalk of trimeric autotransporter adhesin KU224_13295 PF00004 ATPase family associated with various cellular activities (AAA) KU224_13295 PF05362 Lon protease (S16) C-terminal proteolytic domain KU224_13295 PF02190 ATP-dependent protease La (LON) substrate-binding domain KU224_13300 PF02590 Predicted SPOUT methyltransferase KU224_13305 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KU224_13315 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KU224_13315 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KU224_13320 PF04060 Putative Fe-S cluster KU224_13325 PF00730 HhH-GPD superfamily base excision DNA repair protein KU224_13325 PF00633 Helix-hairpin-helix motif KU224_13325 PF10576 Iron-sulfur binding domain of endonuclease III KU224_13335 PF05191 Adenylate kinase, active site lid KU224_13350 PF03717 Penicillin-binding Protein dimerisation domain KU224_13350 PF00905 Penicillin binding protein transpeptidase domain KU224_13365 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU224_13370 PF01730 UreF KU224_13375 PF05194 UreE urease accessory protein, C-terminal domain KU224_13375 PF02814 UreE urease accessory protein, N-terminal domain KU224_13385 PF00699 Urease beta subunit KU224_13390 PF00547 Urease, gamma subunit KU224_13395 PF01774 UreD urease accessory protein KU224_13410 PF00463 Isocitrate lyase family KU224_13415 PF03466 LysR substrate binding domain KU224_13415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_13420 PF00571 CBS domain KU224_13420 PF03471 Transporter associated domain KU224_13420 PF01595 Cyclin M transmembrane N-terminal domain KU224_13425 PF03600 Citrate transporter KU224_13440 PF00009 Elongation factor Tu GTP binding domain KU224_13445 PF01507 Phosphoadenosine phosphosulfate reductase family KU224_13460 PF14052 Capsule assembly protein Wzi KU224_13465 PF00152 tRNA synthetases class II (D, K and N) KU224_13465 PF01336 OB-fold nucleic acid binding domain KU224_13480 PF00301 Rubredoxin KU224_13485 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_13485 PF18113 Rubredoxin binding C-terminal domain KU224_13490 PF00561 alpha/beta hydrolase fold KU224_13495 PF03466 LysR substrate binding domain KU224_13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_13505 PF13090 Polyphosphate kinase C-terminal domain 2 KU224_13505 PF02503 Polyphosphate kinase middle domain KU224_13505 PF17941 Polyphosphate kinase C-terminal domain 1 KU224_13505 PF13089 Polyphosphate kinase N-terminal domain KU224_13510 PF00912 Transglycosylase KU224_13515 PF01694 Rhomboid family KU224_13525 PF00005 ABC transporter KU224_13530 PF13472 GDSL-like Lipase/Acylhydrolase family KU224_13535 PF00484 Carbonic anhydrase KU224_13540 PF00561 alpha/beta hydrolase fold KU224_13550 PF07715 TonB-dependent Receptor Plug Domain KU224_13550 PF00593 TonB dependent receptor KU224_13555 PF01521 Iron-sulphur cluster biosynthesis KU224_13555 PF01106 NifU-like domain KU224_13565 PF00884 Sulfatase KU224_13570 PF03781 Sulfatase-modifying factor enzyme 1 KU224_13585 PF00291 Pyridoxal-phosphate dependent enzyme KU224_13590 PF01384 Phosphate transporter family KU224_13595 PF02310 B12 binding domain KU224_13595 PF00809 Pterin binding enzyme KU224_13595 PF02965 Vitamin B12 dependent methionine synthase, activation domain KU224_13595 PF02607 B12 binding domain KU224_13595 PF02574 Homocysteine S-methyltransferase KU224_13600 PF02779 Transketolase, pyrimidine binding domain KU224_13600 PF02780 Transketolase, C-terminal domain KU224_13605 PF00456 Transketolase, thiamine diphosphate binding domain KU224_13610 PF07690 Major Facilitator Superfamily KU224_13620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_13620 PF03466 LysR substrate binding domain KU224_13630 PF01263 Aldose 1-epimerase KU224_13635 PF07690 Major Facilitator Superfamily KU224_13640 PF12833 Helix-turn-helix domain KU224_13640 PF02311 AraC-like ligand binding domain KU224_13645 PF04960 Glutaminase KU224_13650 PF01327 Polypeptide deformylase KU224_13655 PF07690 Major Facilitator Superfamily KU224_13665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU224_13665 PF00205 Thiamine pyrophosphate enzyme, central domain KU224_13665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU224_13670 PF00171 Aldehyde dehydrogenase family KU224_13675 PF01958 Domain of unknown function DUF108 KU224_13675 PF03447 Homoserine dehydrogenase, NAD binding domain KU224_13685 PF12697 Alpha/beta hydrolase family KU224_13695 PF07690 Major Facilitator Superfamily KU224_13700 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_13700 PF14759 Reductase C-terminal KU224_13705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU224_13715 PF00355 Rieske [2Fe-2S] domain KU224_13725 PF00355 Rieske [2Fe-2S] domain KU224_13730 PF09339 IclR helix-turn-helix domain KU224_13730 PF01614 Bacterial transcriptional regulator KU224_13745 PF00378 Enoyl-CoA hydratase/isomerase KU224_13755 PF00535 Glycosyl transferase family 2 KU224_13760 PF14883 Hypothetical glycosyl hydrolase family 13 KU224_13760 PF01522 Polysaccharide deacetylase KU224_13765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU224_13770 PF07152 YaeQ protein KU224_13775 PF00375 Sodium:dicarboxylate symporter family KU224_13780 PF07683 Cobalamin synthesis protein cobW C-terminal domain KU224_13780 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU224_13790 PF03061 Thioesterase superfamily KU224_13800 PF02028 BCCT, betaine/carnitine/choline family transporter KU224_13805 PF02028 BCCT, betaine/carnitine/choline family transporter KU224_13810 PF13977 BetI-type transcriptional repressor, C-terminal KU224_13810 PF00440 Bacterial regulatory proteins, tetR family KU224_13815 PF00171 Aldehyde dehydrogenase family KU224_13820 PF05199 GMC oxidoreductase KU224_13820 PF00732 GMC oxidoreductase KU224_13825 PF06039 Malate:quinone oxidoreductase (Mqo) KU224_13835 PF02574 Homocysteine S-methyltransferase KU224_13840 PF13520 Amino acid permease KU224_13865 PF01126 Heme oxygenase KU224_13875 PF04575 Protein of unknown function (DUF560) KU224_13885 PF07715 TonB-dependent Receptor Plug Domain KU224_13885 PF00593 TonB dependent receptor KU224_13895 PF04542 Sigma-70 region 2 KU224_13895 PF08281 Sigma-70, region 4 KU224_13905 PF00701 Dihydrodipicolinate synthetase family KU224_13910 PF00083 Sugar (and other) transporter KU224_13930 PF01026 TatD related DNase KU224_13945 PF07693 KAP family P-loop domain KU224_13965 PF00436 Single-strand binding protein family KU224_14020 PF13356 Arm DNA-binding domain KU224_14020 PF00589 Phage integrase family KU224_14120 PF00712 DNA polymerase III beta subunit, N-terminal domain KU224_14120 PF02767 DNA polymerase III beta subunit, central domain KU224_14120 PF02768 DNA polymerase III beta subunit, C-terminal domain KU224_14160 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KU224_14330 PF00929 Exonuclease KU224_14405 PF07690 Major Facilitator Superfamily KU224_14410 PF13533 Biotin-lipoyl like KU224_14415 PF03061 Thioesterase superfamily KU224_14420 PF00490 Delta-aminolevulinic acid dehydratase KU224_14425 PF01266 FAD dependent oxidoreductase KU224_14430 PF08338 Domain of unknown function (DUF1731) KU224_14430 PF01370 NAD dependent epimerase/dehydratase family KU224_14450 PF00149 Calcineurin-like phosphoesterase KU224_14450 PF12320 Type 5 capsule protein repressor C-terminal domain KU224_14460 PF01168 Alanine racemase, N-terminal domain KU224_14465 PF00437 Type II/IV secretion system protein KU224_14470 PF00437 Type II/IV secretion system protein KU224_14475 PF01475 Ferric uptake regulator family KU224_14480 PF04355 SmpA / OmlA family KU224_14485 PF03658 RnfH family Ubiquitin KU224_14495 PF01814 Hemerythrin HHE cation binding domain KU224_14500 PF13230 Glutamine amidotransferases class-II KU224_14510 PF00696 Amino acid kinase family KU224_14515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU224_14515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU224_14515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU224_14515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU224_14520 PF00692 dUTPase KU224_14525 PF00580 UvrD/REP helicase N-terminal domain KU224_14525 PF13361 UvrD-like helicase C-terminal domain KU224_14530 PF13488 Glycine zipper KU224_14530 PF00691 OmpA family KU224_14535 PF01553 Acyltransferase KU224_14545 PF03775 Septum formation inhibitor MinC, C-terminal domain KU224_14550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KU224_14555 PF03776 Septum formation topological specificity factor MinE KU224_14575 PF01810 LysE type translocator KU224_14580 PF17854 FtsK alpha domain KU224_14580 PF09397 Ftsk gamma domain KU224_14580 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KU224_14580 PF01580 FtsK/SpoIIIE family KU224_14585 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU224_14590 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KU224_14595 PF04377 Arginine-tRNA-protein transferase, C terminus KU224_14595 PF04376 Arginine-tRNA-protein transferase, N terminus KU224_14600 PF00583 Acetyltransferase (GNAT) family KU224_14615 PF03144 Elongation factor Tu domain 2 KU224_14615 PF00009 Elongation factor Tu GTP binding domain KU224_14615 PF03143 Elongation factor Tu C-terminal domain KU224_14620 PF03144 Elongation factor Tu domain 2 KU224_14620 PF00679 Elongation factor G C-terminus KU224_14620 PF14492 Elongation Factor G, domain II KU224_14620 PF03764 Elongation factor G, domain IV KU224_14620 PF00009 Elongation factor Tu GTP binding domain KU224_14625 PF00177 Ribosomal protein S7p/S5e KU224_14630 PF00164 Ribosomal protein S12/S23 KU224_14640 PF02801 Beta-ketoacyl synthase, C-terminal domain KU224_14640 PF00109 Beta-ketoacyl synthase, N-terminal domain KU224_14645 PF03653 Uncharacterised protein family (UPF0093) KU224_14650 PF02678 Pirin KU224_14650 PF05726 Pirin C-terminal cupin domain KU224_14660 PF02540 NAD synthase KU224_14660 PF00795 Carbon-nitrogen hydrolase KU224_14675 PF00111 2Fe-2S iron-sulfur cluster binding domain KU224_14675 PF00175 Oxidoreductase NAD-binding domain KU224_14675 PF00970 Oxidoreductase FAD-binding domain KU224_14680 PF00171 Aldehyde dehydrogenase family KU224_14685 PF00355 Rieske [2Fe-2S] domain KU224_14685 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU224_14690 PF07859 alpha/beta hydrolase fold KU224_14695 PF02028 BCCT, betaine/carnitine/choline family transporter KU224_14700 PF00180 Isocitrate/isopropylmalate dehydrogenase KU224_14705 PF03466 LysR substrate binding domain KU224_14705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_14725 PF00037 4Fe-4S binding domain KU224_14730 PF01467 Cytidylyltransferase-like KU224_14735 PF01668 SmpB protein KU224_14740 PF03358 NADPH-dependent FMN reductase KU224_14745 PF02578 Multi-copper polyphenol oxidoreductase laccase KU224_14750 PF01479 S4 domain KU224_14750 PF00849 RNA pseudouridylate synthase KU224_14755 PF13525 Outer membrane lipoprotein KU224_14760 PF08278 DNA primase DnaG DnaB-binding KU224_14760 PF08275 DNA primase catalytic core, N-terminal domain KU224_14760 PF01807 CHC2 zinc finger KU224_14760 PF10410 DnaB-helicase binding domain of primase KU224_14765 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KU224_14765 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KU224_14765 PF01488 Shikimate / quinate 5-dehydrogenase KU224_14775 PF03550 Outer membrane lipoprotein LolB KU224_14780 PF08544 GHMP kinases C terminal KU224_14780 PF00288 GHMP kinases N terminal domain KU224_14805 PF14572 Phosphoribosyl synthetase-associated domain KU224_14805 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KU224_14810 PF01386 Ribosomal L25p family KU224_14815 PF01195 Peptidyl-tRNA hydrolase KU224_14820 PF02261 Aspartate decarboxylase KU224_14835 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KU224_14845 PF02581 Thiamine monophosphate synthase KU224_14845 PF08543 Phosphomethylpyrimidine kinase KU224_14845 PF03070 TENA/THI-4/PQQC family KU224_14850 PF01476 LysM domain KU224_14850 PF04972 BON domain KU224_14855 PF00550 Phosphopantetheine attachment site KU224_14865 PF00698 Acyl transferase domain KU224_14870 PF01783 Ribosomal L32p protein family KU224_14875 PF02620 Large ribosomal RNA subunit accumulation protein YceD KU224_14880 PF04315 Elongation factor P hydroxylase KU224_14885 PF01300 Telomere recombination KU224_14890 PF02616 Segregation and condensation protein ScpA KU224_14895 PF04079 Segregation and condensation complex subunit ScpB KU224_14900 PF00849 RNA pseudouridylate synthase KU224_14900 PF01479 S4 domain KU224_14915 PF00155 Aminotransferase class I and II KU224_14920 PF06968 Biotin and Thiamin Synthesis associated domain KU224_14920 PF00202 Aminotransferase class-III KU224_14920 PF04055 Radical SAM superfamily KU224_14925 PF08241 Methyltransferase domain KU224_14925 PF12697 Alpha/beta hydrolase family KU224_14930 PF02358 Trehalose-phosphatase KU224_14935 PF00982 Glycosyltransferase family 20 KU224_14940 PF07690 Major Facilitator Superfamily KU224_14945 PF00210 Ferritin-like domain KU224_14950 PF12826 Helix-hairpin-helix motif KU224_14950 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KU224_14950 PF01653 NAD-dependent DNA ligase adenylation domain KU224_14950 PF00533 BRCA1 C Terminus (BRCT) domain KU224_14950 PF03120 NAD-dependent DNA ligase OB-fold domain KU224_14960 PF06470 SMC proteins Flexible Hinge Domain KU224_14960 PF02463 RecF/RecN/SMC N terminal domain KU224_14970 PF01925 Sulfite exporter TauE/SafE KU224_14980 PF03309 Type III pantothenate kinase KU224_14985 PF00448 SRP54-type protein, GTPase domain KU224_14985 PF02881 SRP54-type protein, helical bundle domain KU224_14985 PF02978 Signal peptide binding domain KU224_14995 PF01207 Dihydrouridine synthase (Dus) KU224_15025 PF00692 dUTPase KU224_15040 PF01048 Phosphorylase superfamily KU224_15045 PF10609 NUBPL iron-transfer P-loop NTPase KU224_15055 PF01588 Putative tRNA binding domain KU224_15055 PF09334 tRNA synthetases class I (M) KU224_15080 PF13533 Biotin-lipoyl like KU224_15085 PF00291 Pyridoxal-phosphate dependent enzyme KU224_15100 PF05552 Conserved TM helix KU224_15115 PF00970 Oxidoreductase FAD-binding domain KU224_15115 PF00175 Oxidoreductase NAD-binding domain KU224_15120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_15120 PF03466 LysR substrate binding domain KU224_15125 PF00313 'Cold-shock' DNA-binding domain KU224_15135 PF00361 Proton-conducting membrane transporter KU224_15140 PF00361 Proton-conducting membrane transporter KU224_15145 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KU224_15145 PF00361 Proton-conducting membrane transporter KU224_15150 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KU224_15155 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KU224_15160 PF12838 4Fe-4S dicluster domain KU224_15165 PF00146 NADH dehydrogenase KU224_15170 PF00384 Molybdopterin oxidoreductase KU224_15170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU224_15170 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KU224_15175 PF10531 SLBB domain KU224_15175 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KU224_15175 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KU224_15185 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KU224_15185 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KU224_15190 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KU224_15195 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KU224_15200 PF17151 Periplasmic sensor domain KU224_15200 PF00990 Diguanylate cyclase, GGDEF domain KU224_15210 PF00672 HAMP domain KU224_15210 PF00512 His Kinase A (phospho-acceptor) domain KU224_15210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_15215 PF00486 Transcriptional regulatory protein, C terminal KU224_15215 PF00072 Response regulator receiver domain KU224_15225 PF03477 ATP cone domain KU224_15225 PF02867 Ribonucleotide reductase, barrel domain KU224_15225 PF00317 Ribonucleotide reductase, all-alpha domain KU224_15235 PF00268 Ribonucleotide reductase, small chain KU224_15245 PF13755 Sensor N-terminal transmembrane domain KU224_15245 PF13756 Stimulus-sensing domain KU224_15245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_15245 PF00672 HAMP domain KU224_15245 PF00512 His Kinase A (phospho-acceptor) domain KU224_15315 PF13360 PQQ-like domain KU224_15315 PF01011 PQQ enzyme repeat KU224_15340 PF02567 Phenazine biosynthesis-like protein KU224_15360 PF01613 Flavin reductase like domain KU224_15365 PF08267 Cobalamin-independent synthase, N-terminal domain KU224_15365 PF01717 Cobalamin-independent synthase, Catalytic domain KU224_15375 PF03466 LysR substrate binding domain KU224_15375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_15380 PF01810 LysE type translocator KU224_15390 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KU224_15390 PF12833 Helix-turn-helix domain KU224_15395 PF07687 Peptidase dimerisation domain KU224_15395 PF01546 Peptidase family M20/M25/M40 KU224_15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_15405 PF03466 LysR substrate binding domain KU224_15410 PF07690 Major Facilitator Superfamily KU224_15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_15420 PF03466 LysR substrate binding domain KU224_15425 PF14537 Cytochrome c3 KU224_15425 PF00890 FAD binding domain KU224_15435 PF02515 CoA-transferase family III KU224_15440 PF07690 Major Facilitator Superfamily KU224_15445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_15445 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_15445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_15450 PF03466 LysR substrate binding domain KU224_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_15455 PF08240 Alcohol dehydrogenase GroES-like domain KU224_15455 PF00107 Zinc-binding dehydrogenase KU224_15460 PF00962 Adenosine/AMP deaminase KU224_15485 PF02445 Quinolinate synthetase A protein KU224_15490 PF01960 ArgJ family KU224_15495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KU224_15495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU224_15500 PF00893 Small Multidrug Resistance protein KU224_15510 PF05275 Copper resistance protein B precursor (CopB) KU224_15515 PF07732 Multicopper oxidase KU224_15515 PF07731 Multicopper oxidase KU224_15515 PF00394 Multicopper oxidase KU224_15530 PF00834 Ribulose-phosphate 3 epimerase family KU224_15540 PF00756 Putative esterase KU224_15550 PF04445 Putative SAM-dependent methyltransferase KU224_15555 PF00814 Glycoprotease family KU224_15560 PF00132 Bacterial transferase hexapeptide (six repeats) KU224_15565 PF00293 NUDIX domain KU224_15610 PF04715 Anthranilate synthase component I, N terminal region KU224_15610 PF00425 chorismate binding enzyme KU224_15615 PF00155 Aminotransferase class I and II KU224_15620 PF00815 Histidinol dehydrogenase KU224_15625 PF01634 ATP phosphoribosyltransferase KU224_15630 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KU224_15635 PF01722 BolA-like protein KU224_15640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KU224_15645 PF04963 Sigma-54 factor, core binding domain KU224_15645 PF04552 Sigma-54, DNA binding domain KU224_15645 PF00309 Sigma-54 factor, Activator interacting domain (AID) KU224_15690 PF00795 Carbon-nitrogen hydrolase KU224_15700 PF01047 MarR family KU224_15705 PF02566 OsmC-like protein KU224_15710 PF00437 Type II/IV secretion system protein KU224_15750 PF00905 Penicillin binding protein transpeptidase domain KU224_15785 PF02899 Phage integrase, N-terminal SAM-like domain KU224_15785 PF00589 Phage integrase family KU224_15810 PF00665 Integrase core domain KU224_15825 PF00809 Pterin binding enzyme KU224_15830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU224_15830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU224_15830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU224_15830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU224_15840 PF00665 Integrase core domain KU224_15870 PF00582 Universal stress protein family KU224_15875 PF01740 STAS domain KU224_15875 PF00916 Sulfate permease family KU224_15890 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KU224_15890 PF01612 3'-5' exonuclease KU224_15890 PF00476 DNA polymerase family A KU224_15890 PF01367 5'-3' exonuclease, C-terminal SAM fold KU224_15895 PF02325 YGGT family KU224_15900 PF14748 Pyrroline-5-carboxylate reductase dimerisation KU224_15900 PF03807 NADP oxidoreductase coenzyme F420-dependent KU224_15905 PF11734 TilS substrate C-terminal domain KU224_15905 PF01171 PP-loop family KU224_15905 PF09179 TilS substrate binding domain KU224_15910 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KU224_15915 PF02541 Ppx/GppA phosphatase family KU224_15920 PF00085 Thioredoxin KU224_15925 PF07497 Rho termination factor, RNA-binding domain KU224_15925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU224_15925 PF07498 Rho termination factor, N-terminal domain KU224_15940 PF00216 Bacterial DNA-binding protein KU224_15945 PF03147 Ferredoxin-fold anticodon binding domain KU224_15945 PF03484 tRNA synthetase B5 domain KU224_15945 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KU224_15945 PF01588 Putative tRNA binding domain KU224_15945 PF03483 B3/4 domain KU224_15950 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KU224_15950 PF01409 tRNA synthetases class II core domain (F) KU224_15970 PF00453 Ribosomal protein L20 KU224_15975 PF01632 Ribosomal protein L35 KU224_15980 PF07690 Major Facilitator Superfamily KU224_15985 PF09335 SNARE associated Golgi protein KU224_15990 PF00043 Glutathione S-transferase, C-terminal domain KU224_15990 PF02798 Glutathione S-transferase, N-terminal domain KU224_15995 PF00707 Translation initiation factor IF-3, C-terminal domain KU224_15995 PF05198 Translation initiation factor IF-3, N-terminal domain KU224_16000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KU224_16000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU224_16000 PF02824 TGS domain KU224_16000 PF03129 Anticodon binding domain KU224_16005 PF00501 AMP-binding enzyme KU224_16005 PF13193 AMP-binding enzyme C-terminal domain KU224_16010 PF04751 Protein of unknown function (DUF615) KU224_16015 PF00381 PTS HPr component phosphorylation site KU224_16020 PF03668 P-loop ATPase protein family KU224_16025 PF02569 Pantoate-beta-alanine ligase KU224_16030 PF02548 Ketopantoate hydroxymethyltransferase KU224_16035 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KU224_16040 PF12627 Probable RNA and SrmB- binding site of polymerase A KU224_16040 PF12626 Polymerase A arginine-rich C-terminus KU224_16040 PF01743 Poly A polymerase head domain KU224_16050 PF03819 MazG nucleotide pyrophosphohydrolase domain KU224_16060 PF02824 TGS domain KU224_16060 PF13291 ACT domain KU224_16060 PF04607 Region found in RelA / SpoT proteins KU224_16065 PF05958 tRNA (Uracil-5-)-methyltransferase KU224_16075 PF00291 Pyridoxal-phosphate dependent enzyme KU224_16080 PF01627 Hpt domain KU224_16080 PF00072 Response regulator receiver domain KU224_16080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_16080 PF00672 HAMP domain KU224_16080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KU224_16080 PF00512 His Kinase A (phospho-acceptor) domain KU224_16085 PF00378 Enoyl-CoA hydratase/isomerase KU224_16090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU224_16090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU224_16095 PF01261 Xylose isomerase-like TIM barrel KU224_16105 PF00106 short chain dehydrogenase KU224_16110 PF02233 NAD(P) transhydrogenase beta subunit KU224_16115 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KU224_16120 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KU224_16120 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KU224_16125 PF00892 EamA-like transporter family KU224_16135 PF07690 Major Facilitator Superfamily KU224_16140 PF01207 Dihydrouridine synthase (Dus) KU224_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_16150 PF03466 LysR substrate binding domain KU224_16160 PF00899 ThiF family KU224_16170 PF00330 Aconitase family (aconitate hydratase) KU224_16170 PF00694 Aconitase C-terminal domain KU224_16175 PF01026 TatD related DNase KU224_16190 PF03144 Elongation factor Tu domain 2 KU224_16190 PF00009 Elongation factor Tu GTP binding domain KU224_16190 PF16658 Class II release factor RF3, C-terminal domain KU224_16210 PF03707 Bacterial signalling protein N terminal repeat KU224_16210 PF00990 Diguanylate cyclase, GGDEF domain KU224_16210 PF00563 EAL domain KU224_16215 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KU224_16215 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KU224_16220 PF10369 Small subunit of acetolactate synthase KU224_16225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU224_16225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU224_16225 PF00205 Thiamine pyrophosphate enzyme, central domain KU224_16235 PF08264 Anticodon-binding domain of tRNA KU224_16235 PF00133 tRNA synthetases class I (I, L, M and V) KU224_16235 PF13603 Leucyl-tRNA synthetase, Domain 2 KU224_16235 PF09334 tRNA synthetases class I (M) KU224_16250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU224_16255 PF00005 ABC transporter KU224_16255 PF02687 FtsX-like permease family KU224_16255 PF12704 MacB-like periplasmic core domain KU224_16260 PF02321 Outer membrane efflux protein KU224_16275 PF00929 Exonuclease KU224_16280 PF03193 RsgA GTPase KU224_16290 PF00462 Glutaredoxin KU224_16295 PF02556 Preprotein translocase subunit SecB KU224_16310 PF02801 Beta-ketoacyl synthase, C-terminal domain KU224_16310 PF00109 Beta-ketoacyl synthase, N-terminal domain KU224_16325 PF02801 Beta-ketoacyl synthase, C-terminal domain KU224_16325 PF00109 Beta-ketoacyl synthase, N-terminal domain KU224_16335 PF04820 Tryptophan halogenase KU224_16355 PF00221 Aromatic amino acid lyase KU224_16370 PF00501 AMP-binding enzyme KU224_16370 PF13193 AMP-binding enzyme C-terminal domain KU224_16380 PF00550 Phosphopantetheine attachment site KU224_16385 PF00550 Phosphopantetheine attachment site KU224_16400 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KU224_16400 PF01926 50S ribosome-binding GTPase KU224_16405 PF13360 PQQ-like domain KU224_16415 PF03129 Anticodon binding domain KU224_16415 PF13393 Histidyl-tRNA synthetase KU224_16420 PF04551 GcpE protein KU224_16425 PF13464 Domain of unknown function (DUF4115) KU224_16435 PF04055 Radical SAM superfamily KU224_16440 PF00334 Nucleoside diphosphate kinase KU224_16445 PF04384 Iron-sulphur cluster assembly KU224_16450 PF01569 PAP2 superfamily KU224_16455 PF00534 Glycosyl transferases group 1 KU224_16455 PF13439 Glycosyltransferase Family 4 KU224_16460 PF11818 C-terminal domain of tail specific protease (DUF3340) KU224_16460 PF00595 PDZ domain KU224_16460 PF03572 Peptidase family S41 KU224_16460 PF17804 Tail specific protease N-terminal domain KU224_16465 PF00933 Glycosyl hydrolase family 3 N terminal domain KU224_16475 PF00561 alpha/beta hydrolase fold KU224_16480 PF00171 Aldehyde dehydrogenase family KU224_16485 PF00171 Aldehyde dehydrogenase family KU224_16490 PF01202 Shikimate kinase KU224_16495 PF02447 GntP family permease KU224_16500 PF01081 KDPG and KHG aldolase KU224_16505 PF00920 Dehydratase family KU224_16515 PF00871 Acetokinase family KU224_16520 PF07085 DRTGG domain KU224_16520 PF01515 Phosphate acetyl/butaryl transferase KU224_16525 PF05681 Fumarate hydratase (Fumerase) KU224_16525 PF05683 Fumarase C-terminus KU224_16540 PF07724 AAA domain (Cdc48 subfamily) KU224_16540 PF10431 C-terminal, D2-small domain, of ClpB protein KU224_16540 PF06689 ClpX C4-type zinc finger KU224_16545 PF00574 Clp protease KU224_16550 PF05697 Bacterial trigger factor protein (TF) KU224_16550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU224_16550 PF05698 Bacterial trigger factor protein (TF) C-terminus KU224_16555 PF07715 TonB-dependent Receptor Plug Domain KU224_16555 PF00593 TonB dependent receptor KU224_16560 PF13640 2OG-Fe(II) oxygenase superfamily KU224_16560 PF18331 PKHD-type hydroxylase C-terminal domain KU224_16565 PF00682 HMGL-like KU224_16565 PF08502 LeuA allosteric (dimerisation) domain KU224_16570 PF00561 alpha/beta hydrolase fold KU224_16575 PF07021 Methionine biosynthesis protein MetW KU224_16575 PF00561 alpha/beta hydrolase fold KU224_16585 PF01725 Ham1 family KU224_16595 PF02416 mttA/Hcf106 family KU224_16600 PF02416 mttA/Hcf106 family KU224_16605 PF00902 Sec-independent protein translocase protein (TatC) KU224_16625 PF01790 Prolipoprotein diacylglyceryl transferase KU224_16640 PF00303 Thymidylate synthase KU224_16645 PF00186 Dihydrofolate reductase KU224_16655 PF01625 Peptide methionine sulfoxide reductase KU224_16665 PF01618 MotA/TolQ/ExbB proton channel family KU224_16675 PF01842 ACT domain KU224_16675 PF00551 Formyl transferase KU224_16685 PF00171 Aldehyde dehydrogenase family KU224_16690 PF00830 Ribosomal L28 family KU224_16695 PF00471 Ribosomal protein L33 KU224_16700 PF00999 Sodium/hydrogen exchanger family KU224_16700 PF02254 TrkA-N domain KU224_16720 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KU224_16725 PF00580 UvrD/REP helicase N-terminal domain KU224_16725 PF13361 UvrD-like helicase C-terminal domain KU224_16740 PF08272 Topoisomerase I zinc-ribbon-like KU224_16740 PF01131 DNA topoisomerase KU224_16740 PF01751 Toprim domain KU224_16740 PF01396 Topoisomerase DNA binding C4 zinc finger KU224_16750 PF01638 HxlR-like helix-turn-helix KU224_16755 PF08240 Alcohol dehydrogenase GroES-like domain KU224_16755 PF00107 Zinc-binding dehydrogenase KU224_16760 PF04102 SlyX KU224_16765 PF00005 ABC transporter KU224_16765 PF16326 ABC transporter C-terminal domain KU224_16765 PF12848 ABC transporter KU224_16770 PF01810 LysE type translocator KU224_16775 PF03279 Bacterial lipid A biosynthesis acyltransferase KU224_16785 PF00375 Sodium:dicarboxylate symporter family KU224_16795 PF01118 Semialdehyde dehydrogenase, NAD binding domain KU224_16795 PF02774 Semialdehyde dehydrogenase, dimerisation domain KU224_16815 PF01416 tRNA pseudouridine synthase KU224_16825 PF01176 Translation initiation factor 1A / IF-1 KU224_16840 PF00180 Isocitrate/isopropylmalate dehydrogenase KU224_16850 PF00694 Aconitase C-terminal domain KU224_16855 PF00330 Aconitase family (aconitate hydratase) KU224_16865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_16865 PF03466 LysR substrate binding domain KU224_16885 PF00293 NUDIX domain KU224_16890 PF02896 PEP-utilising enzyme, TIM barrel domain KU224_16890 PF05524 PEP-utilising enzyme, N-terminal KU224_16890 PF01590 GAF domain KU224_16890 PF00391 PEP-utilising enzyme, mobile domain KU224_16895 PF00141 Peroxidase KU224_16900 PF12706 Beta-lactamase superfamily domain KU224_16905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_16905 PF03466 LysR substrate binding domain KU224_16915 PF02798 Glutathione S-transferase, N-terminal domain KU224_16920 PF08279 HTH domain KU224_16920 PF13280 WYL domain KU224_16925 PF13419 Haloacid dehalogenase-like hydrolase KU224_16930 PF01479 S4 domain KU224_16930 PF00849 RNA pseudouridylate synthase KU224_16935 PF12111 Polyribonucleotide phosphorylase C terminal KU224_16935 PF00575 S1 RNA binding domain KU224_16935 PF10150 Ribonuclease E/G family KU224_16940 PF00501 AMP-binding enzyme KU224_16940 PF13193 AMP-binding enzyme C-terminal domain KU224_16955 PF03466 LysR substrate binding domain KU224_16955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU224_16960 PF00106 short chain dehydrogenase KU224_16965 PF06969 HemN C-terminal domain KU224_16965 PF04055 Radical SAM superfamily KU224_16975 PF01554 MatE KU224_16980 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_16980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_16980 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU224_16985 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU224_16985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_16990 PF03109 ABC1 family KU224_16995 PF01197 Ribosomal protein L31 KU224_17010 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KU224_17030 PF03884 DNA gyrase inhibitor YacG KU224_17035 PF00753 Metallo-beta-lactamase superfamily KU224_17040 PF00762 Ferrochelatase KU224_17050 PF01177 Asp/Glu/Hydantoin racemase KU224_17065 PF01206 Sulfurtransferase TusA KU224_17070 PF00571 CBS domain KU224_17070 PF03471 Transporter associated domain KU224_17075 PF00795 Carbon-nitrogen hydrolase KU224_17080 PF01588 Putative tRNA binding domain KU224_17090 PF07963 Prokaryotic N-terminal methylation motif KU224_17090 PF08334 Type II secretion system (T2SS), protein G KU224_17095 PF00482 Type II secretion system (T2SS), protein F KU224_17100 PF00271 Helicase conserved C-terminal domain KU224_17100 PF00270 DEAD/DEAH box helicase KU224_17100 PF17764 3′ DNA-binding domain (3′BD) KU224_17100 PF18074 Primosomal protein N C-terminal domain KU224_17100 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KU224_17105 PF00999 Sodium/hydrogen exchanger family KU224_17105 PF02254 TrkA-N domain KU224_17110 PF01430 Hsp33 protein KU224_17120 PF00226 DnaJ domain KU224_17120 PF01556 DnaJ C terminal domain KU224_17130 PF01544 CorA-like Mg2+ transporter protein KU224_17135 PF00575 S1 RNA binding domain KU224_17135 PF03725 3' exoribonuclease family, domain 2 KU224_17135 PF01138 3' exoribonuclease family, domain 1 KU224_17135 PF00013 KH domain KU224_17135 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KU224_17140 PF00312 Ribosomal protein S15 KU224_17145 PF00144 Beta-lactamase KU224_17150 PF13538 UvrD-like helicase C-terminal domain KU224_17155 PF12705 PD-(D/E)XK nuclease superfamily KU224_17155 PF13361 UvrD-like helicase C-terminal domain KU224_17155 PF00580 UvrD/REP helicase N-terminal domain KU224_17160 PF17946 RecC C-terminal domain KU224_17170 PF03976 Polyphosphate kinase 2 (PPK2) KU224_17180 PF01209 ubiE/COQ5 methyltransferase family KU224_17190 PF03109 ABC1 family KU224_17195 PF01494 FAD binding domain KU224_17200 PF01502 Phosphoribosyl-AMP cyclohydrolase KU224_17215 PF00361 Proton-conducting membrane transporter KU224_17215 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KU224_17215 PF13244 Domain of unknown function (DUF4040) KU224_17215 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KU224_17220 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KU224_17225 PF00361 Proton-conducting membrane transporter KU224_17230 PF01899 Na+/H+ ion antiporter subunit KU224_17235 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KU224_17240 PF03334 Na+/H+ antiporter subunit KU224_17245 PF02033 Ribosome-binding factor A KU224_17250 PF04760 Translation initiation factor IF-2, N-terminal region KU224_17250 PF00009 Elongation factor Tu GTP binding domain KU224_17250 PF11987 Translation-initiation factor 2 KU224_17250 PF08364 Bacterial translation initiation factor IF-2 associated region KU224_17255 PF13184 NusA-like KH domain KU224_17255 PF08529 NusA N-terminal domain KU224_17255 PF00575 S1 RNA binding domain KU224_17260 PF17384 RimP C-terminal SH3 domain KU224_17260 PF02576 RimP N-terminal domain KU224_17280 PF03840 Preprotein translocase SecG subunit KU224_17285 PF00121 Triosephosphate isomerase KU224_17290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KU224_17290 PF00437 Type II/IV secretion system protein KU224_17295 PF00482 Type II secretion system (T2SS), protein F KU224_17300 PF06750 Bacterial Peptidase A24 N-terminal domain KU224_17300 PF01478 Type IV leader peptidase family KU224_17305 PF01121 Dephospho-CoA kinase KU224_17315 PF00588 SpoU rRNA Methylase family KU224_17315 PF08032 RNA 2'-O ribose methyltransferase substrate binding KU224_17320 PF06865 Pyrimidine/purine nucleoside phosphorylase KU224_17330 PF02463 RecF/RecN/SMC N terminal domain KU224_17335 PF02622 Uncharacterized ACR, COG1678 KU224_17340 PF03652 Holliday junction resolvase KU224_17345 PF13533 Biotin-lipoyl like KU224_17370 PF02805 Metal binding domain of Ada KU224_17370 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU224_17370 PF12833 Helix-turn-helix domain KU224_17370 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KU224_17375 PF01066 CDP-alcohol phosphatidyltransferase KU224_17385 PF01541 GIY-YIG catalytic domain KU224_17385 PF02151 UvrB/uvrC motif KU224_17385 PF08459 UvrC Helix-hairpin-helix N-terminal KU224_17405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU224_17405 PF00378 Enoyl-CoA hydratase/isomerase KU224_17405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU224_17410 PF02803 Thiolase, C-terminal domain KU224_17410 PF00108 Thiolase, N-terminal domain KU224_17430 PF00376 MerR family regulatory protein KU224_17430 PF09278 MerR, DNA binding KU224_17440 PF01323 DSBA-like thioredoxin domain KU224_17455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_17455 PF00183 Hsp90 protein KU224_17470 PF03553 Na+/H+ antiporter family KU224_17470 PF13726 Na+-H+ antiporter family KU224_17475 PF00561 alpha/beta hydrolase fold KU224_17495 PF04997 RNA polymerase Rpb1, domain 1 KU224_17495 PF00623 RNA polymerase Rpb1, domain 2 KU224_17495 PF04983 RNA polymerase Rpb1, domain 3 KU224_17495 PF05000 RNA polymerase Rpb1, domain 4 KU224_17495 PF04998 RNA polymerase Rpb1, domain 5 KU224_17500 PF04563 RNA polymerase beta subunit KU224_17500 PF04565 RNA polymerase Rpb2, domain 3 KU224_17500 PF10385 RNA polymerase beta subunit external 1 domain KU224_17500 PF04560 RNA polymerase Rpb2, domain 7 KU224_17500 PF04561 RNA polymerase Rpb2, domain 2 KU224_17500 PF00562 RNA polymerase Rpb2, domain 6 KU224_17505 PF00542 Ribosomal protein L7/L12 C-terminal domain KU224_17505 PF16320 Ribosomal protein L7/L12 dimerisation domain KU224_17510 PF00466 Ribosomal protein L10 KU224_17515 PF00687 Ribosomal protein L1p/L10e family KU224_17520 PF00298 Ribosomal protein L11, RNA binding domain KU224_17520 PF03946 Ribosomal protein L11, N-terminal domain KU224_17525 PF00467 KOW motif KU224_17525 PF02357 Transcription termination factor nusG KU224_17530 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KU224_17540 PF00009 Elongation factor Tu GTP binding domain KU224_17540 PF03144 Elongation factor Tu domain 2 KU224_17540 PF03143 Elongation factor Tu C-terminal domain KU224_17565 PF00425 chorismate binding enzyme KU224_17565 PF04715 Anthranilate synthase component I, N terminal region KU224_17570 PF13419 Haloacid dehalogenase-like hydrolase KU224_17575 PF12401 Protein of unknown function (DUF2662) KU224_17575 PF00498 FHA domain KU224_17580 PF00263 Bacterial type II and III secretion system protein KU224_17580 PF03958 Bacterial type II/III secretion system short domain KU224_17595 PF00816 H-NS histone family KU224_17620 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KU224_17620 PF03900 Porphobilinogen deaminase, C-terminal domain KU224_17625 PF04397 LytTr DNA-binding domain KU224_17625 PF00072 Response regulator receiver domain KU224_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_17630 PF07694 5TMR of 5TMR-LYT KU224_17630 PF06580 Histidine kinase KU224_17635 PF00206 Lyase KU224_17635 PF14698 Argininosuccinate lyase C-terminal KU224_17640 PF04362 Bacterial Fe(2+) trafficking KU224_17645 PF01895 PhoU domain KU224_17650 PF02321 Outer membrane efflux protein KU224_17655 PF00892 EamA-like transporter family KU224_17670 PF13667 ThiC-associated domain KU224_17670 PF01964 Radical SAM ThiC family KU224_17675 PF00293 NUDIX domain KU224_17680 PF00149 Calcineurin-like phosphoesterase KU224_17685 PF01258 Prokaryotic dksA/traR C4-type zinc finger KU224_17690 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU224_17695 PF01098 Cell cycle protein KU224_17700 PF02875 Mur ligase family, glutamate ligase domain KU224_17700 PF08245 Mur ligase middle domain KU224_17710 PF02421 Ferrous iron transport protein B KU224_17710 PF07670 Nucleoside recognition KU224_17710 PF07664 Ferrous iron transport protein B C terminus KU224_17720 PF02899 Phage integrase, N-terminal SAM-like domain KU224_17720 PF00589 Phage integrase family KU224_17725 PF10411 Disulfide bond isomerase protein N-terminus KU224_17725 PF13098 Thioredoxin-like domain KU224_17730 PF03447 Homoserine dehydrogenase, NAD binding domain KU224_17730 PF01842 ACT domain KU224_17730 PF00742 Homoserine dehydrogenase KU224_17735 PF00291 Pyridoxal-phosphate dependent enzyme KU224_17740 PF00768 D-alanyl-D-alanine carboxypeptidase KU224_17745 PF00196 Bacterial regulatory proteins, luxR family KU224_17745 PF00072 Response regulator receiver domain KU224_17750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU224_17750 PF00512 His Kinase A (phospho-acceptor) domain KU224_17755 PF02954 Bacterial regulatory protein, Fis family KU224_17755 PF00072 Response regulator receiver domain KU224_17755 PF00158 Sigma-54 interaction domain KU224_17760 PF00595 PDZ domain KU224_17760 PF03572 Peptidase family S41 KU224_17765 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KU224_17765 PF01676 Metalloenzyme superfamily KU224_17770 PF03739 Lipopolysaccharide export system permease LptF/LptG KU224_17780 PF02789 Cytosol aminopeptidase family, N-terminal domain KU224_17780 PF00883 Cytosol aminopeptidase family, catalytic domain KU224_17800 PF00677 Lumazine binding domain KU224_17810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KU224_17810 PF01872 RibD C-terminal domain KU224_17815 PF03477 ATP cone domain KU224_17820 PF00909 Ammonium Transporter Family KU224_17825 PF00543 Nitrogen regulatory protein P-II KU224_17835 PF01078 Magnesium chelatase, subunit ChlI KU224_17835 PF13335 Magnesium chelatase, subunit ChlI C-terminal KU224_17845 PF01636 Phosphotransferase enzyme family KU224_17850 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase KU224_17870 PF02909 Tetracyclin repressor-like, C-terminal domain KU224_17870 PF00440 Bacterial regulatory proteins, tetR family KU224_17875 PF07690 Major Facilitator Superfamily KU224_17885 PF00916 Sulfate permease family KU224_17885 PF01740 STAS domain KU224_17890 PF00582 Universal stress protein family KU224_17910 PF00665 Integrase core domain KU224_17920 PF01078 Magnesium chelatase, subunit ChlI KU224_17920 PF13335 Magnesium chelatase, subunit ChlI C-terminal KU224_17935 PF00701 Dihydrodipicolinate synthetase family KU224_17945 PF03573 outer membrane porin, OprD family KU224_17950 PF00719 Inorganic pyrophosphatase KU224_17965 PF00501 AMP-binding enzyme KU224_17965 PF13193 AMP-binding enzyme C-terminal domain KU224_17970 PF00521 DNA gyrase/topoisomerase IV, subunit A KU224_17970 PF03989 DNA gyrase C-terminal domain, beta-propeller KU224_17975 PF07690 Major Facilitator Superfamily KU224_17980 PF03458 UPF0126 domain KU224_17985 PF02810 SEC-C motif KU224_17990 PF03471 Transporter associated domain KU224_17990 PF03741 Integral membrane protein TerC family KU224_17995 PF03641 Possible lysine decarboxylase KU224_18000 PF07690 Major Facilitator Superfamily KU224_18010 PF00817 impB/mucB/samB family KU224_18010 PF11798 IMS family HHH motif KU224_18010 PF11799 impB/mucB/samB family C-terminal domain KU224_18025 PF11842 Domain of unknown function (DUF3362) KU224_18025 PF04055 Radical SAM superfamily KU224_18025 PF08497 Radical SAM N-terminal KU224_18045 PF03358 NADPH-dependent FMN reductase KU224_18055 PF00291 Pyridoxal-phosphate dependent enzyme KU224_18090 PF00440 Bacterial regulatory proteins, tetR family KU224_18115 PF01327 Polypeptide deformylase KU224_18125 PF02481 DNA recombination-mediator protein A KU224_18125 PF17782 DprA winged helix domain KU224_18130 PF01300 Telomere recombination KU224_18135 PF00892 EamA-like transporter family KU224_18140 PF00440 Bacterial regulatory proteins, tetR family KU224_18145 PF07690 Major Facilitator Superfamily KU224_18155 PF00255 Glutathione peroxidase KU224_18165 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KU224_18170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU224_18170 PF02874 ATP synthase alpha/beta family, beta-barrel domain KU224_18175 PF00231 ATP synthase KU224_18180 PF02874 ATP synthase alpha/beta family, beta-barrel domain KU224_18180 PF00306 ATP synthase alpha/beta chain, C terminal domain KU224_18180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU224_18185 PF00213 ATP synthase delta (OSCP) subunit KU224_18190 PF00430 ATP synthase B/B' CF(0) KU224_18195 PF00137 ATP synthase subunit C KU224_18200 PF00119 ATP synthase A chain KU224_18220 PF00005 ABC transporter KU224_18225 PF00950 ABC 3 transport family KU224_18230 PF01810 LysE type translocator KU224_18235 PF04261 Dyp-type peroxidase family KU224_18245 PF00390 Malic enzyme, N-terminal domain KU224_18245 PF03949 Malic enzyme, NAD binding domain KU224_18250 PF00750 tRNA synthetases class I (R) KU224_18250 PF03485 Arginyl tRNA synthetase N terminal domain KU224_18250 PF05746 DALR anticodon binding domain KU224_18270 PF02678 Pirin KU224_18270 PF05726 Pirin C-terminal cupin domain KU224_18280 PF03551 Transcriptional regulator PadR-like family KU224_18285 PF13427 Domain of unknown function (DUF4111) KU224_18285 PF01909 Nucleotidyltransferase domain KU224_18290 PF00117 Glutamine amidotransferase class-I KU224_18290 PF00958 GMP synthase C terminal domain KU224_18290 PF02540 NAD synthase KU224_18295 PF04286 Protein of unknown function (DUF445) KU224_18300 PF07681 DoxX KU224_18305 PF09335 SNARE associated Golgi protein KU224_18320 PF13614 AAA domain KU224_18330 PF01722 BolA-like protein KU224_18345 PF01648 4'-phosphopantetheinyl transferase superfamily KU224_18350 PF12697 Alpha/beta hydrolase family KU224_18370 PF00109 Beta-ketoacyl synthase, N-terminal domain KU224_18370 PF02801 Beta-ketoacyl synthase, C-terminal domain KU224_18370 PF08242 Methyltransferase domain KU224_18370 PF00550 Phosphopantetheine attachment site KU224_18370 PF14765 Polyketide synthase dehydratase KU224_18370 PF00975 Thioesterase domain KU224_18370 PF16197 Ketoacyl-synthetase C-terminal extension KU224_18375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_18375 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_18375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_18380 PF00501 AMP-binding enzyme KU224_18385 PF00196 Bacterial regulatory proteins, luxR family KU224_18385 PF03472 Autoinducer binding domain KU224_18395 PF00765 Autoinducer synthase KU224_18400 PF00083 Sugar (and other) transporter KU224_18400 PF07690 Major Facilitator Superfamily KU224_18405 PF00378 Enoyl-CoA hydratase/isomerase KU224_18410 PF00378 Enoyl-CoA hydratase/isomerase KU224_18415 PF02770 Acyl-CoA dehydrogenase, middle domain KU224_18415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU224_18415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU224_18420 PF13193 AMP-binding enzyme C-terminal domain KU224_18420 PF00501 AMP-binding enzyme KU224_18425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU224_18425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU224_18430 PF00171 Aldehyde dehydrogenase family KU224_18440 PF00324 Amino acid permease KU224_18445 PF00324 Amino acid permease KU224_18450 PF01042 Endoribonuclease L-PSP KU224_18455 PF00842 Alanine racemase, C-terminal domain KU224_18455 PF01168 Alanine racemase, N-terminal domain KU224_18460 PF01266 FAD dependent oxidoreductase KU224_18465 PF01037 Lrp/AsnC ligand binding domain KU224_18475 PF07715 TonB-dependent Receptor Plug Domain KU224_18475 PF00593 TonB dependent receptor KU224_18490 PF00849 RNA pseudouridylate synthase KU224_18505 PF08361 MAATS-type transcriptional repressor, C-terminal region KU224_18505 PF00440 Bacterial regulatory proteins, tetR family KU224_18515 PF02801 Beta-ketoacyl synthase, C-terminal domain KU224_18515 PF00109 Beta-ketoacyl synthase, N-terminal domain KU224_18550 PF00330 Aconitase family (aconitate hydratase) KU224_18550 PF00694 Aconitase C-terminal domain KU224_18555 PF00285 Citrate synthase, C-terminal domain KU224_18565 PF00392 Bacterial regulatory proteins, gntR family KU224_18565 PF07729 FCD domain KU224_18575 PF00155 Aminotransferase class I and II KU224_18580 PF09330 D-lactate dehydrogenase, membrane binding KU224_18580 PF01565 FAD binding domain KU224_18585 PF01070 FMN-dependent dehydrogenase KU224_18590 PF00392 Bacterial regulatory proteins, gntR family KU224_18590 PF07729 FCD domain KU224_18595 PF02652 L-lactate permease KU224_18600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU224_18600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU224_18600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU224_18600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU224_18605 PF16363 GDP-mannose 4,6 dehydratase KU224_18610 PF00342 Phosphoglucose isomerase KU224_18615 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KU224_18615 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KU224_18615 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KU224_18620 PF00483 Nucleotidyl transferase KU224_18625 PF02397 Bacterial sugar transferase KU224_18630 PF00953 Glycosyl transferase family 4 KU224_18635 PF01370 NAD dependent epimerase/dehydratase family KU224_18640 PF13579 Glycosyl transferase 4-like domain KU224_18645 PF02350 UDP-N-acetylglucosamine 2-epimerase KU224_18650 PF01370 NAD dependent epimerase/dehydratase family KU224_18655 PF08485 Polysaccharide biosynthesis protein C-terminal KU224_18655 PF02719 Polysaccharide biosynthesis protein KU224_18680 PF01370 NAD dependent epimerase/dehydratase family KU224_18685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KU224_18685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KU224_18685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KU224_18690 PF02563 Polysaccharide biosynthesis/export protein KU224_18690 PF10531 SLBB domain KU224_18690 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KU224_18695 PF01451 Low molecular weight phosphotyrosine protein phosphatase KU224_18700 PF02706 Chain length determinant protein KU224_18700 PF13807 G-rich domain on putative tyrosine kinase KU224_18700 PF13614 AAA domain KU224_18705 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KU224_18705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU224_18710 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KU224_18710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU224_18715 PF03023 Lipid II flippase MurJ KU224_18720 PF01510 N-acetylmuramoyl-L-alanine amidase KU224_18725 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KU224_18725 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KU224_18735 PF04185 Phosphoesterase family KU224_18735 PF05506 Domain of unknown function (DUF756) KU224_18740 PF03725 3' exoribonuclease family, domain 2 KU224_18740 PF01138 3' exoribonuclease family, domain 1 KU224_18745 PF00487 Fatty acid desaturase KU224_18750 PF00175 Oxidoreductase NAD-binding domain KU224_18755 PF00440 Bacterial regulatory proteins, tetR family KU224_18760 PF08360 QacR-like protein, C-terminal region KU224_18760 PF00440 Bacterial regulatory proteins, tetR family KU224_18765 PF01323 DSBA-like thioredoxin domain KU224_18775 PF13419 Haloacid dehalogenase-like hydrolase KU224_18780 PF00106 short chain dehydrogenase KU224_18795 PF00583 Acetyltransferase (GNAT) family KU224_18795 PF00696 Amino acid kinase family KU224_18800 PF09084 NMT1/THI5 like KU224_18805 PF09084 NMT1/THI5 like KU224_18810 PF00296 Luciferase-like monooxygenase KU224_18815 PF00528 Binding-protein-dependent transport system inner membrane component KU224_18820 PF00005 ABC transporter KU224_18825 PF00440 Bacterial regulatory proteins, tetR family KU224_18825 PF08362 YcdC-like protein, C-terminal region KU224_18830 PF01048 Phosphorylase superfamily KU224_18840 PF06574 FAD synthetase KU224_18840 PF01687 Riboflavin kinase KU224_18845 PF06827 Zinc finger found in FPG and IleRS KU224_18845 PF00133 tRNA synthetases class I (I, L, M and V) KU224_18845 PF08264 Anticodon-binding domain of tRNA KU224_18850 PF01252 Signal peptidase (SPase) II KU224_18855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU224_18895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KU224_18900 PF07859 alpha/beta hydrolase fold KU224_18925 PF01025 GrpE KU224_18930 PF00012 Hsp70 protein KU224_18950 PF13406 Transglycosylase SLT domain KU224_18955 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KU224_18955 PF02222 ATP-grasp domain KU224_18960 PF00731 AIR carboxylase KU224_18970 PF02875 Mur ligase family, glutamate ligase domain KU224_18970 PF08245 Mur ligase middle domain KU224_18970 PF01225 Mur ligase family, catalytic domain KU224_18980 PF01569 PAP2 superfamily KU224_18985 PF03741 Integral membrane protein TerC family KU224_18995 PF03738 Glutathionylspermidine synthase preATP-grasp KU224_19000 PF00355 Rieske [2Fe-2S] domain KU224_19005 PF01979 Amidohydrolase family KU224_19010 PF00156 Phosphoribosyl transferase domain KU224_19020 PF13098 Thioredoxin-like domain KU224_19020 PF10411 Disulfide bond isomerase protein N-terminus KU224_19025 PF01545 Cation efflux family KU224_19025 PF16916 Dimerisation domain of Zinc Transporter KU224_19030 PF02583 Metal-sensitive transcriptional repressor KU224_19035 PF10396 GTP-binding protein TrmE N-terminus KU224_19035 PF12631 MnmE helical domain KU224_19035 PF01926 50S ribosome-binding GTPase KU224_19040 PF02096 60Kd inner membrane protein KU224_19040 PF14849 YidC periplasmic domain KU224_19045 PF01809 Putative membrane protein insertion efficiency factor KU224_19050 PF00825 Ribonuclease P KU224_19055 PF00468 Ribosomal protein L34 KU224_19110 PF00565 Staphylococcal nuclease homologue KU224_19115 PF00816 H-NS histone family KU224_19155 PF00665 Integrase core domain KU224_19185 PF00582 Universal stress protein family KU224_19190 PF00916 Sulfate permease family KU224_19190 PF01740 STAS domain KU224_19225 PF13614 AAA domain KU224_19230 PF17762 HTH domain found in ParB protein KU224_19230 PF02195 ParB-like nuclease domain KU224_19245 PF05816 Toxic anion resistance protein (TelA) KU224_19345 PF00226 DnaJ domain KU224_19345 PF01556 DnaJ C terminal domain KU224_19345 PF00684 DnaJ central domain KU224_19380 PF08751 TrwC relaxase KU224_19380 PF18340 DNA relaxase TraI 2B/2B-like domain KU224_19380 PF07057 DNA helicase TraI KU224_19380 PF18272 single-stranded DNA binding TraI N-terminal subdomain KU224_19420 PF02796 Helix-turn-helix domain of resolvase KU224_19420 PF00239 Resolvase, N terminal domain KU224_19435 PF01464 Transglycosylase SLT domain KU224_19470 PF10411 Disulfide bond isomerase protein N-terminus KU224_19470 PF13098 Thioredoxin-like domain KU224_19505 PF06834 TraU protein KU224_19515 PF06986 Type-1V conjugative transfer system mating pair stabilisation KU224_19530 PF06122 Conjugative relaxosome accessory transposon protein KU224_19550 PF00817 impB/mucB/samB family KU224_19550 PF13438 Domain of unknown function (DUF4113) KU224_19550 PF11799 impB/mucB/samB family C-terminal domain KU224_19620 PF07715 TonB-dependent Receptor Plug Domain KU224_19620 PF00593 TonB dependent receptor