locus-tag class description DU202_00001 PF12848 ABC transporter DU202_00001 PF00005 ABC transporter DU202_00002 PF09335 SNARE associated Golgi protein DU202_00004 PF01751 Toprim domain DU202_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_00004 PF18053 DNA gyrase B subunit insert domain DU202_00004 PF00986 DNA gyrase B subunit, carboxyl terminus DU202_00004 PF00204 DNA gyrase B DU202_00005 PF02463 RecF/RecN/SMC N terminal domain DU202_00006 PF02768 DNA polymerase III beta subunit, C-terminal domain DU202_00006 PF02767 DNA polymerase III beta subunit, central domain DU202_00006 PF00712 DNA polymerase III beta subunit, N-terminal domain DU202_00007 PF00308 Bacterial dnaA protein DU202_00007 PF08299 Bacterial dnaA protein helix-turn-helix DU202_00007 PF11638 DnaA N-terminal domain DU202_00008 PF00468 Ribosomal protein L34 DU202_00009 PF00825 Ribonuclease P DU202_00010 PF01809 Putative membrane protein insertion efficiency factor DU202_00011 PF14849 YidC periplasmic domain DU202_00011 PF02096 60Kd inner membrane protein DU202_00012 PF10396 GTP-binding protein TrmE N-terminus DU202_00012 PF01926 50S ribosome-binding GTPase DU202_00012 PF12631 MnmE helical domain DU202_00013 PF02583 Metal-sensitive transcriptional repressor DU202_00014 PF01545 Cation efflux family DU202_00014 PF16916 Dimerisation domain of Zinc Transporter DU202_00015 PF13098 Thioredoxin-like domain DU202_00015 PF10411 Disulfide bond isomerase protein N-terminus DU202_00017 PF00156 Phosphoribosyl transferase domain DU202_00019 PF01979 Amidohydrolase family DU202_00020 PF00355 Rieske [2Fe-2S] domain DU202_00021 PF03738 Glutathionylspermidine synthase preATP-grasp DU202_00023 PF03741 Integral membrane protein TerC family DU202_00024 PF01569 PAP2 superfamily DU202_00026 PF02875 Mur ligase family, glutamate ligase domain DU202_00026 PF08245 Mur ligase middle domain DU202_00026 PF01225 Mur ligase family, catalytic domain DU202_00028 PF00731 AIR carboxylase DU202_00029 PF02222 ATP-grasp domain DU202_00029 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DU202_00030 PF13406 Transglycosylase SLT domain DU202_00034 PF00012 Hsp70 protein DU202_00035 PF01025 GrpE DU202_00036 PF03466 LysR substrate binding domain DU202_00036 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00040 PF07859 alpha/beta hydrolase fold DU202_00041 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DU202_00049 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DU202_00050 PF01252 Signal peptidase (SPase) II DU202_00051 PF08264 Anticodon-binding domain of tRNA DU202_00051 PF00133 tRNA synthetases class I (I, L, M and V) DU202_00051 PF06827 Zinc finger found in FPG and IleRS DU202_00052 PF06574 FAD synthetase DU202_00052 PF01687 Riboflavin kinase DU202_00054 PF01048 Phosphorylase superfamily DU202_00055 PF00440 Bacterial regulatory proteins, tetR family DU202_00055 PF08362 YcdC-like protein, C-terminal region DU202_00056 PF00005 ABC transporter DU202_00057 PF00528 Binding-protein-dependent transport system inner membrane component DU202_00058 PF00296 Luciferase-like monooxygenase DU202_00059 PF09084 NMT1/THI5 like DU202_00060 PF09084 NMT1/THI5 like DU202_00061 PF00583 Acetyltransferase (GNAT) family DU202_00061 PF00696 Amino acid kinase family DU202_00064 PF00106 short chain dehydrogenase DU202_00065 PF13419 Haloacid dehalogenase-like hydrolase DU202_00067 PF01323 DSBA-like thioredoxin domain DU202_00068 PF00440 Bacterial regulatory proteins, tetR family DU202_00068 PF08360 QacR-like protein, C-terminal region DU202_00069 PF00440 Bacterial regulatory proteins, tetR family DU202_00070 PF00175 Oxidoreductase NAD-binding domain DU202_00071 PF00487 Fatty acid desaturase DU202_00072 PF03725 3' exoribonuclease family, domain 2 DU202_00072 PF01138 3' exoribonuclease family, domain 1 DU202_00073 PF05506 Domain of unknown function (DUF756) DU202_00073 PF04185 Phosphoesterase family DU202_00075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DU202_00075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DU202_00076 PF01510 N-acetylmuramoyl-L-alanine amidase DU202_00077 PF03023 Lipid II flippase MurJ DU202_00078 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DU202_00078 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DU202_00079 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DU202_00079 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DU202_00080 PF13614 AAA domain DU202_00080 PF13807 G-rich domain on putative tyrosine kinase DU202_00080 PF02706 Chain length determinant protein DU202_00081 PF01451 Low molecular weight phosphotyrosine protein phosphatase DU202_00082 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DU202_00082 PF10531 SLBB domain DU202_00082 PF02563 Polysaccharide biosynthesis/export protein DU202_00083 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DU202_00083 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DU202_00083 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DU202_00084 PF02719 Polysaccharide biosynthesis protein DU202_00085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DU202_00086 PF02348 Cytidylyltransferase DU202_00089 PF03102 NeuB family DU202_00089 PF08666 SAF domain DU202_00090 PF01943 Polysaccharide biosynthesis protein DU202_00091 PF07922 Glycosyltransferase family 52 DU202_00094 PF00535 Glycosyl transferase family 2 DU202_00095 PF02397 Bacterial sugar transferase DU202_00096 PF00483 Nucleotidyl transferase DU202_00097 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DU202_00097 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DU202_00097 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DU202_00098 PF00342 Phosphoglucose isomerase DU202_00099 PF16363 GDP-mannose 4,6 dehydratase DU202_00100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DU202_00100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DU202_00100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DU202_00100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DU202_00101 PF02652 L-lactate permease DU202_00102 PF07729 FCD domain DU202_00102 PF00392 Bacterial regulatory proteins, gntR family DU202_00103 PF01070 FMN-dependent dehydrogenase DU202_00104 PF09330 D-lactate dehydrogenase, membrane binding DU202_00104 PF01565 FAD binding domain DU202_00105 PF00155 Aminotransferase class I and II DU202_00106 PF00392 Bacterial regulatory proteins, gntR family DU202_00106 PF07729 FCD domain DU202_00108 PF00285 Citrate synthase, C-terminal domain DU202_00109 PF00330 Aconitase family (aconitate hydratase) DU202_00109 PF00694 Aconitase C-terminal domain DU202_00112 PF00293 NUDIX domain DU202_00118 PF02801 Beta-ketoacyl synthase, C-terminal domain DU202_00118 PF00109 Beta-ketoacyl synthase, N-terminal domain DU202_00121 PF00849 RNA pseudouridylate synthase DU202_00124 PF07715 TonB-dependent Receptor Plug Domain DU202_00124 PF00593 TonB dependent receptor DU202_00126 PF01037 Lrp/AsnC ligand binding domain DU202_00127 PF01266 FAD dependent oxidoreductase DU202_00128 PF01168 Alanine racemase, N-terminal domain DU202_00128 PF00842 Alanine racemase, C-terminal domain DU202_00129 PF01042 Endoribonuclease L-PSP DU202_00130 PF00324 Amino acid permease DU202_00131 PF00324 Amino acid permease DU202_00133 PF00171 Aldehyde dehydrogenase family DU202_00134 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DU202_00134 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DU202_00135 PF13193 AMP-binding enzyme C-terminal domain DU202_00135 PF00501 AMP-binding enzyme DU202_00136 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_00136 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_00136 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_00137 PF00378 Enoyl-CoA hydratase/isomerase DU202_00138 PF00378 Enoyl-CoA hydratase/isomerase DU202_00139 PF00083 Sugar (and other) transporter DU202_00139 PF07690 Major Facilitator Superfamily DU202_00140 PF00765 Autoinducer synthase DU202_00143 PF00196 Bacterial regulatory proteins, luxR family DU202_00143 PF03472 Autoinducer binding domain DU202_00145 PF03472 Autoinducer binding domain DU202_00145 PF00196 Bacterial regulatory proteins, luxR family DU202_00146 PF00501 AMP-binding enzyme DU202_00147 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_00147 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_00147 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_00148 PF02801 Beta-ketoacyl synthase, C-terminal domain DU202_00148 PF08659 KR domain DU202_00148 PF14765 Polyketide synthase dehydratase DU202_00148 PF00550 Phosphopantetheine attachment site DU202_00148 PF16197 Ketoacyl-synthetase C-terminal extension DU202_00148 PF00109 Beta-ketoacyl synthase, N-terminal domain DU202_00149 PF00501 AMP-binding enzyme DU202_00149 PF13193 AMP-binding enzyme C-terminal domain DU202_00149 PF00668 Condensation domain DU202_00149 PF00975 Thioesterase domain DU202_00149 PF00550 Phosphopantetheine attachment site DU202_00155 PF12697 Alpha/beta hydrolase family DU202_00156 PF01648 4'-phosphopantetheinyl transferase superfamily DU202_00159 PF01722 BolA-like protein DU202_00161 PF13614 AAA domain DU202_00164 PF09335 SNARE associated Golgi protein DU202_00165 PF07681 DoxX DU202_00166 PF04286 Protein of unknown function (DUF445) DU202_00167 PF02540 NAD synthase DU202_00167 PF00117 Glutamine amidotransferase class-I DU202_00167 PF00958 GMP synthase C terminal domain DU202_00168 PF01909 Nucleotidyltransferase domain DU202_00168 PF13427 Domain of unknown function (DUF4111) DU202_00169 PF03551 Transcriptional regulator PadR-like family DU202_00171 PF02678 Pirin DU202_00171 PF05726 Pirin C-terminal cupin domain DU202_00175 PF03485 Arginyl tRNA synthetase N terminal domain DU202_00175 PF00750 tRNA synthetases class I (R) DU202_00175 PF05746 DALR anticodon binding domain DU202_00176 PF00390 Malic enzyme, N-terminal domain DU202_00176 PF03949 Malic enzyme, NAD binding domain DU202_00178 PF04261 Dyp-type peroxidase family DU202_00179 PF01810 LysE type translocator DU202_00180 PF00950 ABC 3 transport family DU202_00181 PF00005 ABC transporter DU202_00185 PF00119 ATP synthase A chain DU202_00186 PF00137 ATP synthase subunit C DU202_00187 PF00430 ATP synthase B/B' CF(0) DU202_00188 PF00213 ATP synthase delta (OSCP) subunit DU202_00189 PF02874 ATP synthase alpha/beta family, beta-barrel domain DU202_00189 PF00306 ATP synthase alpha/beta chain, C terminal domain DU202_00189 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DU202_00190 PF00231 ATP synthase DU202_00191 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DU202_00191 PF02874 ATP synthase alpha/beta family, beta-barrel domain DU202_00192 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DU202_00194 PF00255 Glutathione peroxidase DU202_00196 PF07690 Major Facilitator Superfamily DU202_00197 PF00440 Bacterial regulatory proteins, tetR family DU202_00198 PF00892 EamA-like transporter family DU202_00199 PF01300 Telomere recombination DU202_00200 PF17782 DprA winged helix domain DU202_00200 PF02481 DNA recombination-mediator protein A DU202_00204 PF01327 Polypeptide deformylase DU202_00209 PF00440 Bacterial regulatory proteins, tetR family DU202_00216 PF00291 Pyridoxal-phosphate dependent enzyme DU202_00218 PF03358 NADPH-dependent FMN reductase DU202_00222 PF04055 Radical SAM superfamily DU202_00222 PF11842 Domain of unknown function (DUF3362) DU202_00222 PF08497 Radical SAM N-terminal DU202_00225 PF00817 impB/mucB/samB family DU202_00225 PF11798 IMS family HHH motif DU202_00225 PF11799 impB/mucB/samB family C-terminal domain DU202_00227 PF07690 Major Facilitator Superfamily DU202_00228 PF03641 Possible lysine decarboxylase DU202_00229 PF03471 Transporter associated domain DU202_00229 PF03741 Integral membrane protein TerC family DU202_00230 PF02810 SEC-C motif DU202_00231 PF03458 UPF0126 domain DU202_00232 PF07690 Major Facilitator Superfamily DU202_00233 PF03989 DNA gyrase C-terminal domain, beta-propeller DU202_00233 PF00521 DNA gyrase/topoisomerase IV, subunit A DU202_00234 PF00501 AMP-binding enzyme DU202_00234 PF13193 AMP-binding enzyme C-terminal domain DU202_00237 PF00719 Inorganic pyrophosphatase DU202_00238 PF03573 outer membrane porin, OprD family DU202_00241 PF00701 Dihydrodipicolinate synthetase family DU202_00243 PF00392 Bacterial regulatory proteins, gntR family DU202_00243 PF00155 Aminotransferase class I and II DU202_00244 PF01078 Magnesium chelatase, subunit ChlI DU202_00244 PF13335 Magnesium chelatase, subunit ChlI C-terminal DU202_00246 PF00665 Integrase core domain DU202_00250 PF00582 Universal stress protein family DU202_00251 PF00916 Sulfate permease family DU202_00251 PF01740 STAS domain DU202_00253 PF07690 Major Facilitator Superfamily DU202_00254 PF02909 Tetracyclin repressor-like, C-terminal domain DU202_00254 PF00440 Bacterial regulatory proteins, tetR family DU202_00258 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DU202_00259 PF01636 Phosphotransferase enzyme family DU202_00261 PF13335 Magnesium chelatase, subunit ChlI C-terminal DU202_00261 PF01078 Magnesium chelatase, subunit ChlI DU202_00263 PF00543 Nitrogen regulatory protein P-II DU202_00264 PF00909 Ammonium Transporter Family DU202_00265 PF03477 ATP cone domain DU202_00266 PF01872 RibD C-terminal domain DU202_00266 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DU202_00268 PF00677 Lumazine binding domain DU202_00272 PF00883 Cytosol aminopeptidase family, catalytic domain DU202_00272 PF02789 Cytosol aminopeptidase family, N-terminal domain DU202_00274 PF03739 Lipopolysaccharide export system permease LptF/LptG DU202_00275 PF01676 Metalloenzyme superfamily DU202_00275 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DU202_00276 PF03572 Peptidase family S41 DU202_00276 PF00595 PDZ domain DU202_00277 PF00158 Sigma-54 interaction domain DU202_00277 PF00072 Response regulator receiver domain DU202_00277 PF02954 Bacterial regulatory protein, Fis family DU202_00278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_00278 PF00512 His Kinase A (phospho-acceptor) domain DU202_00279 PF00196 Bacterial regulatory proteins, luxR family DU202_00279 PF00072 Response regulator receiver domain DU202_00280 PF00768 D-alanyl-D-alanine carboxypeptidase DU202_00281 PF00291 Pyridoxal-phosphate dependent enzyme DU202_00282 PF00742 Homoserine dehydrogenase DU202_00282 PF03447 Homoserine dehydrogenase, NAD binding domain DU202_00282 PF01842 ACT domain DU202_00283 PF13098 Thioredoxin-like domain DU202_00283 PF10411 Disulfide bond isomerase protein N-terminus DU202_00284 PF02899 Phage integrase, N-terminal SAM-like domain DU202_00284 PF00589 Phage integrase family DU202_00287 PF07664 Ferrous iron transport protein B C terminus DU202_00287 PF02421 Ferrous iron transport protein B DU202_00287 PF07670 Nucleoside recognition DU202_00289 PF08245 Mur ligase middle domain DU202_00289 PF02875 Mur ligase family, glutamate ligase domain DU202_00290 PF01098 Cell cycle protein DU202_00291 PF00749 tRNA synthetases class I (E and Q), catalytic domain DU202_00292 PF01258 Prokaryotic dksA/traR C4-type zinc finger DU202_00293 PF00149 Calcineurin-like phosphoesterase DU202_00294 PF00293 NUDIX domain DU202_00295 PF01964 Radical SAM ThiC family DU202_00295 PF13667 ThiC-associated domain DU202_00298 PF00892 EamA-like transporter family DU202_00299 PF02321 Outer membrane efflux protein DU202_00300 PF01895 PhoU domain DU202_00301 PF04362 Bacterial Fe(2+) trafficking DU202_00302 PF00206 Lyase DU202_00302 PF14698 Argininosuccinate lyase C-terminal DU202_00303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_00303 PF06580 Histidine kinase DU202_00303 PF07694 5TMR of 5TMR-LYT DU202_00304 PF00072 Response regulator receiver domain DU202_00304 PF04397 LytTr DNA-binding domain DU202_00305 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DU202_00305 PF03900 Porphobilinogen deaminase, C-terminal domain DU202_00310 PF00816 H-NS histone family DU202_00313 PF00263 Bacterial type II and III secretion system protein DU202_00313 PF03958 Bacterial type II/III secretion system short domain DU202_00314 PF00498 FHA domain DU202_00314 PF12401 Protein of unknown function (DUF2662) DU202_00315 PF13419 Haloacid dehalogenase-like hydrolase DU202_00316 PF04715 Anthranilate synthase component I, N terminal region DU202_00316 PF00425 chorismate binding enzyme DU202_00321 PF03144 Elongation factor Tu domain 2 DU202_00321 PF00009 Elongation factor Tu GTP binding domain DU202_00321 PF03143 Elongation factor Tu C-terminal domain DU202_00323 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DU202_00324 PF00467 KOW motif DU202_00324 PF02357 Transcription termination factor nusG DU202_00325 PF03946 Ribosomal protein L11, N-terminal domain DU202_00325 PF00298 Ribosomal protein L11, RNA binding domain DU202_00326 PF00687 Ribosomal protein L1p/L10e family DU202_00327 PF00466 Ribosomal protein L10 DU202_00328 PF00542 Ribosomal protein L7/L12 C-terminal domain DU202_00328 PF16320 Ribosomal protein L7/L12 dimerisation domain DU202_00329 PF04561 RNA polymerase Rpb2, domain 2 DU202_00329 PF04565 RNA polymerase Rpb2, domain 3 DU202_00329 PF10385 RNA polymerase beta subunit external 1 domain DU202_00329 PF00562 RNA polymerase Rpb2, domain 6 DU202_00329 PF04560 RNA polymerase Rpb2, domain 7 DU202_00329 PF04563 RNA polymerase beta subunit DU202_00330 PF05000 RNA polymerase Rpb1, domain 4 DU202_00330 PF00623 RNA polymerase Rpb1, domain 2 DU202_00330 PF04983 RNA polymerase Rpb1, domain 3 DU202_00330 PF04998 RNA polymerase Rpb1, domain 5 DU202_00330 PF04997 RNA polymerase Rpb1, domain 1 DU202_00334 PF00561 alpha/beta hydrolase fold DU202_00335 PF03553 Na+/H+ antiporter family DU202_00335 PF13726 Na+-H+ antiporter family DU202_00338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_00338 PF00183 Hsp90 protein DU202_00341 PF01323 DSBA-like thioredoxin domain DU202_00343 PF00376 MerR family regulatory protein DU202_00343 PF09278 MerR, DNA binding DU202_00347 PF02803 Thiolase, C-terminal domain DU202_00347 PF00108 Thiolase, N-terminal domain DU202_00348 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DU202_00348 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DU202_00348 PF00378 Enoyl-CoA hydratase/isomerase DU202_00353 PF01541 GIY-YIG catalytic domain DU202_00353 PF02151 UvrB/uvrC motif DU202_00353 PF08459 UvrC Helix-hairpin-helix N-terminal DU202_00355 PF01066 CDP-alcohol phosphatidyltransferase DU202_00356 PF12833 Helix-turn-helix domain DU202_00356 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DU202_00356 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DU202_00356 PF02805 Metal binding domain of Ada DU202_00361 PF13533 Biotin-lipoyl like DU202_00362 PF03652 Holliday junction resolvase DU202_00363 PF02622 Uncharacterized ACR, COG1678 DU202_00364 PF02463 RecF/RecN/SMC N terminal domain DU202_00366 PF06865 Pyrimidine/purine nucleoside phosphorylase DU202_00367 PF00588 SpoU rRNA Methylase family DU202_00367 PF08032 RNA 2'-O ribose methyltransferase substrate binding DU202_00369 PF01121 Dephospho-CoA kinase DU202_00370 PF01478 Type IV leader peptidase family DU202_00370 PF06750 Bacterial Peptidase A24 N-terminal domain DU202_00371 PF00482 Type II secretion system (T2SS), protein F DU202_00372 PF00437 Type II/IV secretion system protein DU202_00372 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DU202_00373 PF00121 Triosephosphate isomerase DU202_00374 PF03840 Preprotein translocase SecG subunit DU202_00378 PF17384 RimP C-terminal SH3 domain DU202_00378 PF02576 RimP N-terminal domain DU202_00379 PF13184 NusA-like KH domain DU202_00379 PF00575 S1 RNA binding domain DU202_00379 PF08529 NusA N-terminal domain DU202_00380 PF11987 Translation-initiation factor 2 DU202_00380 PF08364 Bacterial translation initiation factor IF-2 associated region DU202_00380 PF04760 Translation initiation factor IF-2, N-terminal region DU202_00380 PF00009 Elongation factor Tu GTP binding domain DU202_00381 PF02033 Ribosome-binding factor A DU202_00383 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DU202_00385 PF00361 Proton-conducting membrane transporter DU202_00386 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DU202_00387 PF13244 Domain of unknown function (DUF4040) DU202_00387 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DU202_00387 PF00361 Proton-conducting membrane transporter DU202_00387 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DU202_00390 PF01502 Phosphoribosyl-AMP cyclohydrolase DU202_00391 PF01494 FAD binding domain DU202_00392 PF03109 ABC1 family DU202_00394 PF01209 ubiE/COQ5 methyltransferase family DU202_00396 PF03976 Polyphosphate kinase 2 (PPK2) DU202_00398 PF17946 RecC C-terminal domain DU202_00399 PF12705 PD-(D/E)XK nuclease superfamily DU202_00399 PF00580 UvrD/REP helicase N-terminal domain DU202_00399 PF13361 UvrD-like helicase C-terminal domain DU202_00400 PF13538 UvrD-like helicase C-terminal domain DU202_00402 PF00312 Ribosomal protein S15 DU202_00403 PF00013 KH domain DU202_00403 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DU202_00403 PF01138 3' exoribonuclease family, domain 1 DU202_00403 PF03725 3' exoribonuclease family, domain 2 DU202_00403 PF00575 S1 RNA binding domain DU202_00404 PF01544 CorA-like Mg2+ transporter protein DU202_00406 PF01556 DnaJ C terminal domain DU202_00406 PF00226 DnaJ domain DU202_00408 PF01430 Hsp33 protein DU202_00409 PF02254 TrkA-N domain DU202_00409 PF00999 Sodium/hydrogen exchanger family DU202_00410 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DU202_00410 PF18074 Primosomal protein N C-terminal domain DU202_00410 PF17764 3′ DNA-binding domain (3′BD) DU202_00410 PF00271 Helicase conserved C-terminal domain DU202_00410 PF00270 DEAD/DEAH box helicase DU202_00411 PF00482 Type II secretion system (T2SS), protein F DU202_00412 PF07963 Prokaryotic N-terminal methylation motif DU202_00412 PF08334 Type II secretion system (T2SS), protein G DU202_00416 PF01588 Putative tRNA binding domain DU202_00417 PF00795 Carbon-nitrogen hydrolase DU202_00418 PF00571 CBS domain DU202_00418 PF03471 Transporter associated domain DU202_00419 PF01206 Sulfurtransferase TusA DU202_00422 PF01177 Asp/Glu/Hydantoin racemase DU202_00424 PF00762 Ferrochelatase DU202_00425 PF00753 Metallo-beta-lactamase superfamily DU202_00426 PF03884 DNA gyrase inhibitor YacG DU202_00430 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DU202_00432 PF01197 Ribosomal protein L31 DU202_00433 PF03109 ABC1 family DU202_00434 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DU202_00434 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_00435 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_00435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_00435 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DU202_00436 PF01554 MatE DU202_00439 PF01554 MatE DU202_00441 PF04055 Radical SAM superfamily DU202_00441 PF06969 HemN C-terminal domain DU202_00442 PF00106 short chain dehydrogenase DU202_00443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00443 PF03466 LysR substrate binding domain DU202_00446 PF00501 AMP-binding enzyme DU202_00446 PF13193 AMP-binding enzyme C-terminal domain DU202_00447 PF10150 Ribonuclease E/G family DU202_00447 PF12111 Polyribonucleotide phosphorylase C terminal DU202_00447 PF00575 S1 RNA binding domain DU202_00448 PF01479 S4 domain DU202_00448 PF00849 RNA pseudouridylate synthase DU202_00449 PF13419 Haloacid dehalogenase-like hydrolase DU202_00450 PF08279 HTH domain DU202_00450 PF13280 WYL domain DU202_00451 PF02798 Glutathione S-transferase, N-terminal domain DU202_00454 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00454 PF03466 LysR substrate binding domain DU202_00455 PF12706 Beta-lactamase superfamily domain DU202_00456 PF00141 Peroxidase DU202_00457 PF00391 PEP-utilising enzyme, mobile domain DU202_00457 PF02896 PEP-utilising enzyme, TIM barrel domain DU202_00457 PF01590 GAF domain DU202_00457 PF05524 PEP-utilising enzyme, N-terminal DU202_00458 PF00293 NUDIX domain DU202_00462 PF03466 LysR substrate binding domain DU202_00462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00464 PF00330 Aconitase family (aconitate hydratase) DU202_00465 PF00694 Aconitase C-terminal domain DU202_00467 PF00180 Isocitrate/isopropylmalate dehydrogenase DU202_00470 PF01176 Translation initiation factor 1A / IF-1 DU202_00472 PF01416 tRNA pseudouridine synthase DU202_00476 PF01118 Semialdehyde dehydrogenase, NAD binding domain DU202_00476 PF02774 Semialdehyde dehydrogenase, dimerisation domain DU202_00478 PF00375 Sodium:dicarboxylate symporter family DU202_00480 PF03279 Bacterial lipid A biosynthesis acyltransferase DU202_00481 PF01810 LysE type translocator DU202_00484 PF00107 Zinc-binding dehydrogenase DU202_00484 PF08240 Alcohol dehydrogenase GroES-like domain DU202_00485 PF01638 HxlR-like helix-turn-helix DU202_00487 PF01751 Toprim domain DU202_00487 PF01131 DNA topoisomerase DU202_00487 PF01396 Topoisomerase DNA binding C4 zinc finger DU202_00487 PF08272 Topoisomerase I zinc-ribbon-like DU202_00490 PF00580 UvrD/REP helicase N-terminal domain DU202_00490 PF13361 UvrD-like helicase C-terminal domain DU202_00491 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DU202_00495 PF02254 TrkA-N domain DU202_00495 PF00999 Sodium/hydrogen exchanger family DU202_00496 PF00471 Ribosomal protein L33 DU202_00497 PF00830 Ribosomal L28 family DU202_00498 PF00171 Aldehyde dehydrogenase family DU202_00500 PF01842 ACT domain DU202_00500 PF00551 Formyl transferase DU202_00502 PF01618 MotA/TolQ/ExbB proton channel family DU202_00504 PF01625 Peptide methionine sulfoxide reductase DU202_00506 PF00186 Dihydrofolate reductase DU202_00507 PF00303 Thymidylate synthase DU202_00510 PF01790 Prolipoprotein diacylglyceryl transferase DU202_00514 PF00902 Sec-independent protein translocase protein (TatC) DU202_00515 PF02416 mttA/Hcf106 family DU202_00516 PF02416 mttA/Hcf106 family DU202_00518 PF01725 Ham1 family DU202_00520 PF07021 Methionine biosynthesis protein MetW DU202_00520 PF00561 alpha/beta hydrolase fold DU202_00521 PF00561 alpha/beta hydrolase fold DU202_00522 PF00682 HMGL-like DU202_00522 PF08502 LeuA allosteric (dimerisation) domain DU202_00523 PF18331 PKHD-type hydroxylase C-terminal domain DU202_00523 PF13640 2OG-Fe(II) oxygenase superfamily DU202_00524 PF07715 TonB-dependent Receptor Plug Domain DU202_00524 PF00593 TonB dependent receptor DU202_00525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DU202_00525 PF05697 Bacterial trigger factor protein (TF) DU202_00525 PF05698 Bacterial trigger factor protein (TF) C-terminus DU202_00526 PF00574 Clp protease DU202_00527 PF10431 C-terminal, D2-small domain, of ClpB protein DU202_00527 PF07724 AAA domain (Cdc48 subfamily) DU202_00527 PF06689 ClpX C4-type zinc finger DU202_00530 PF05681 Fumarate hydratase (Fumerase) DU202_00530 PF05683 Fumarase C-terminus DU202_00531 PF01515 Phosphate acetyl/butaryl transferase DU202_00531 PF07085 DRTGG domain DU202_00532 PF00871 Acetokinase family DU202_00533 PF00920 Dehydratase family DU202_00534 PF01081 KDPG and KHG aldolase DU202_00535 PF02447 GntP family permease DU202_00536 PF01202 Shikimate kinase DU202_00537 PF00171 Aldehyde dehydrogenase family DU202_00538 PF00171 Aldehyde dehydrogenase family DU202_00539 PF00561 alpha/beta hydrolase fold DU202_00541 PF00933 Glycosyl hydrolase family 3 N terminal domain DU202_00542 PF03572 Peptidase family S41 DU202_00542 PF17804 Tail specific protease N-terminal domain DU202_00542 PF00595 PDZ domain DU202_00542 PF11818 C-terminal domain of tail specific protease (DUF3340) DU202_00543 PF00534 Glycosyl transferases group 1 DU202_00543 PF13439 Glycosyltransferase Family 4 DU202_00544 PF01569 PAP2 superfamily DU202_00545 PF04384 Iron-sulphur cluster assembly DU202_00546 PF00334 Nucleoside diphosphate kinase DU202_00547 PF04055 Radical SAM superfamily DU202_00549 PF13464 Domain of unknown function (DUF4115) DU202_00550 PF04551 GcpE protein DU202_00551 PF13393 Histidyl-tRNA synthetase DU202_00551 PF03129 Anticodon binding domain DU202_00553 PF13360 PQQ-like domain DU202_00554 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DU202_00554 PF01926 50S ribosome-binding GTPase DU202_00557 PF00550 Phosphopantetheine attachment site DU202_00558 PF00550 Phosphopantetheine attachment site DU202_00560 PF00501 AMP-binding enzyme DU202_00560 PF13193 AMP-binding enzyme C-terminal domain DU202_00563 PF00221 Aromatic amino acid lyase DU202_00567 PF04820 Tryptophan halogenase DU202_00569 PF02801 Beta-ketoacyl synthase, C-terminal domain DU202_00569 PF00109 Beta-ketoacyl synthase, N-terminal domain DU202_00572 PF02801 Beta-ketoacyl synthase, C-terminal domain DU202_00572 PF00109 Beta-ketoacyl synthase, N-terminal domain DU202_00575 PF02556 Preprotein translocase subunit SecB DU202_00576 PF00462 Glutaredoxin DU202_00578 PF03193 RsgA GTPase DU202_00579 PF00929 Exonuclease DU202_00582 PF02321 Outer membrane efflux protein DU202_00583 PF12704 MacB-like periplasmic core domain DU202_00583 PF02687 FtsX-like permease family DU202_00583 PF00005 ABC transporter DU202_00584 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DU202_00587 PF08264 Anticodon-binding domain of tRNA DU202_00587 PF00133 tRNA synthetases class I (I, L, M and V) DU202_00587 PF09334 tRNA synthetases class I (M) DU202_00587 PF13603 Leucyl-tRNA synthetase, Domain 2 DU202_00589 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DU202_00589 PF00205 Thiamine pyrophosphate enzyme, central domain DU202_00589 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DU202_00590 PF10369 Small subunit of acetolactate synthase DU202_00591 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DU202_00591 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DU202_00593 PF03707 Bacterial signalling protein N terminal repeat DU202_00593 PF00563 EAL domain DU202_00593 PF00990 Diguanylate cyclase, GGDEF domain DU202_00598 PF16658 Class II release factor RF3, C-terminal domain DU202_00598 PF03144 Elongation factor Tu domain 2 DU202_00598 PF00009 Elongation factor Tu GTP binding domain DU202_00601 PF01026 TatD related DNase DU202_00602 PF00330 Aconitase family (aconitate hydratase) DU202_00602 PF00694 Aconitase C-terminal domain DU202_00604 PF00899 ThiF family DU202_00605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00605 PF03466 LysR substrate binding domain DU202_00607 PF01207 Dihydrouridine synthase (Dus) DU202_00610 PF07690 Major Facilitator Superfamily DU202_00612 PF00892 EamA-like transporter family DU202_00613 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DU202_00613 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DU202_00614 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DU202_00615 PF02233 NAD(P) transhydrogenase beta subunit DU202_00616 PF00106 short chain dehydrogenase DU202_00618 PF01261 Xylose isomerase-like TIM barrel DU202_00619 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DU202_00619 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DU202_00620 PF00378 Enoyl-CoA hydratase/isomerase DU202_00621 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DU202_00621 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_00621 PF00512 His Kinase A (phospho-acceptor) domain DU202_00621 PF01627 Hpt domain DU202_00621 PF00672 HAMP domain DU202_00621 PF00072 Response regulator receiver domain DU202_00622 PF00291 Pyridoxal-phosphate dependent enzyme DU202_00624 PF05958 tRNA (Uracil-5-)-methyltransferase DU202_00625 PF02824 TGS domain DU202_00625 PF13291 ACT domain DU202_00625 PF04607 Region found in RelA / SpoT proteins DU202_00627 PF03819 MazG nucleotide pyrophosphohydrolase domain DU202_00629 PF12627 Probable RNA and SrmB- binding site of polymerase A DU202_00629 PF12626 Polymerase A arginine-rich C-terminus DU202_00629 PF01743 Poly A polymerase head domain DU202_00630 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DU202_00631 PF02548 Ketopantoate hydroxymethyltransferase DU202_00632 PF02569 Pantoate-beta-alanine ligase DU202_00633 PF03668 P-loop ATPase protein family DU202_00634 PF00381 PTS HPr component phosphorylation site DU202_00635 PF04751 Protein of unknown function (DUF615) DU202_00636 PF13193 AMP-binding enzyme C-terminal domain DU202_00636 PF00501 AMP-binding enzyme DU202_00637 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DU202_00637 PF03129 Anticodon binding domain DU202_00637 PF02824 TGS domain DU202_00637 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DU202_00638 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DU202_00638 PF03129 Anticodon binding domain DU202_00638 PF02824 TGS domain DU202_00638 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DU202_00639 PF00707 Translation initiation factor IF-3, C-terminal domain DU202_00639 PF05198 Translation initiation factor IF-3, N-terminal domain DU202_00640 PF02798 Glutathione S-transferase, N-terminal domain DU202_00640 PF00043 Glutathione S-transferase, C-terminal domain DU202_00641 PF09335 SNARE associated Golgi protein DU202_00642 PF07690 Major Facilitator Superfamily DU202_00643 PF01632 Ribosomal protein L35 DU202_00644 PF00453 Ribosomal protein L20 DU202_00648 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DU202_00648 PF01409 tRNA synthetases class II core domain (F) DU202_00649 PF03483 B3/4 domain DU202_00649 PF03147 Ferredoxin-fold anticodon binding domain DU202_00649 PF01588 Putative tRNA binding domain DU202_00649 PF03484 tRNA synthetase B5 domain DU202_00649 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DU202_00650 PF00216 Bacterial DNA-binding protein DU202_00652 PF07497 Rho termination factor, RNA-binding domain DU202_00652 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DU202_00652 PF07498 Rho termination factor, N-terminal domain DU202_00653 PF00085 Thioredoxin DU202_00654 PF02541 Ppx/GppA phosphatase family DU202_00655 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DU202_00656 PF01171 PP-loop family DU202_00656 PF09179 TilS substrate binding domain DU202_00656 PF11734 TilS substrate C-terminal domain DU202_00657 PF03807 NADP oxidoreductase coenzyme F420-dependent DU202_00657 PF14748 Pyrroline-5-carboxylate reductase dimerisation DU202_00658 PF02325 YGGT family DU202_00659 PF00476 DNA polymerase family A DU202_00659 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DU202_00659 PF01367 5'-3' exonuclease, C-terminal SAM fold DU202_00659 PF01612 3'-5' exonuclease DU202_00663 PF00437 Type II/IV secretion system protein DU202_00664 PF02566 OsmC-like protein DU202_00665 PF01047 MarR family DU202_00667 PF00795 Carbon-nitrogen hydrolase DU202_00676 PF04963 Sigma-54 factor, core binding domain DU202_00676 PF04552 Sigma-54, DNA binding domain DU202_00676 PF00309 Sigma-54 factor, Activator interacting domain (AID) DU202_00677 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DU202_00678 PF01722 BolA-like protein DU202_00679 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DU202_00680 PF01634 ATP phosphoribosyltransferase DU202_00681 PF00815 Histidinol dehydrogenase DU202_00682 PF00155 Aminotransferase class I and II DU202_00683 PF00425 chorismate binding enzyme DU202_00683 PF04715 Anthranilate synthase component I, N terminal region DU202_00692 PF00293 NUDIX domain DU202_00693 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_00694 PF00814 Glycoprotease family DU202_00695 PF04445 Putative SAM-dependent methyltransferase DU202_00700 PF00756 Putative esterase DU202_00702 PF00834 Ribulose-phosphate 3 epimerase family DU202_00707 PF07732 Multicopper oxidase DU202_00707 PF00394 Multicopper oxidase DU202_00707 PF07731 Multicopper oxidase DU202_00708 PF05275 Copper resistance protein B precursor (CopB) DU202_00710 PF00893 Small Multidrug Resistance protein DU202_00711 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DU202_00711 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DU202_00712 PF01960 ArgJ family DU202_00713 PF02445 Quinolinate synthetase A protein DU202_00718 PF00962 Adenosine/AMP deaminase DU202_00719 PF00107 Zinc-binding dehydrogenase DU202_00719 PF08240 Alcohol dehydrogenase GroES-like domain DU202_00720 PF03466 LysR substrate binding domain DU202_00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00721 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_00721 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_00721 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_00722 PF07690 Major Facilitator Superfamily DU202_00723 PF02515 CoA-transferase family III DU202_00725 PF00890 FAD binding domain DU202_00725 PF14537 Cytochrome c3 DU202_00726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00726 PF03466 LysR substrate binding domain DU202_00728 PF07690 Major Facilitator Superfamily DU202_00729 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00729 PF03466 LysR substrate binding domain DU202_00731 PF01546 Peptidase family M20/M25/M40 DU202_00731 PF07687 Peptidase dimerisation domain DU202_00732 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DU202_00732 PF12833 Helix-turn-helix domain DU202_00734 PF01810 LysE type translocator DU202_00735 PF03466 LysR substrate binding domain DU202_00735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00737 PF08267 Cobalamin-independent synthase, N-terminal domain DU202_00737 PF01717 Cobalamin-independent synthase, Catalytic domain DU202_00738 PF01613 Flavin reductase like domain DU202_00743 PF02567 Phenazine biosynthesis-like protein DU202_00748 PF01011 PQQ enzyme repeat DU202_00748 PF13360 PQQ-like domain DU202_00769 PF00672 HAMP domain DU202_00769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_00769 PF00512 His Kinase A (phospho-acceptor) domain DU202_00769 PF13755 Sensor N-terminal transmembrane domain DU202_00769 PF13756 Stimulus-sensing domain DU202_00772 PF00268 Ribonucleotide reductase, small chain DU202_00774 PF00317 Ribonucleotide reductase, all-alpha domain DU202_00774 PF02867 Ribonucleotide reductase, barrel domain DU202_00774 PF03477 ATP cone domain DU202_00775 PF00486 Transcriptional regulatory protein, C terminal DU202_00775 PF00072 Response regulator receiver domain DU202_00776 PF00672 HAMP domain DU202_00776 PF00512 His Kinase A (phospho-acceptor) domain DU202_00776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_00778 PF17151 Periplasmic sensor domain DU202_00778 PF00990 Diguanylate cyclase, GGDEF domain DU202_00779 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DU202_00780 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DU202_00781 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DU202_00781 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DU202_00783 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DU202_00783 PF10531 SLBB domain DU202_00783 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DU202_00784 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DU202_00784 PF00384 Molybdopterin oxidoreductase DU202_00784 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DU202_00785 PF00146 NADH dehydrogenase DU202_00786 PF12838 4Fe-4S dicluster domain DU202_00787 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DU202_00788 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DU202_00789 PF00361 Proton-conducting membrane transporter DU202_00789 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DU202_00790 PF00361 Proton-conducting membrane transporter DU202_00791 PF00361 Proton-conducting membrane transporter DU202_00793 PF00313 'Cold-shock' DNA-binding domain DU202_00794 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00794 PF03466 LysR substrate binding domain DU202_00795 PF00970 Oxidoreductase FAD-binding domain DU202_00795 PF00175 Oxidoreductase NAD-binding domain DU202_00798 PF05552 Conserved TM helix DU202_00801 PF00291 Pyridoxal-phosphate dependent enzyme DU202_00802 PF13533 Biotin-lipoyl like DU202_00807 PF01588 Putative tRNA binding domain DU202_00807 PF09334 tRNA synthetases class I (M) DU202_00809 PF10609 NUBPL iron-transfer P-loop NTPase DU202_00810 PF01048 Phosphorylase superfamily DU202_00813 PF00692 dUTPase DU202_00819 PF01207 Dihydrouridine synthase (Dus) DU202_00821 PF02978 Signal peptide binding domain DU202_00821 PF02881 SRP54-type protein, helical bundle domain DU202_00821 PF00448 SRP54-type protein, GTPase domain DU202_00822 PF03309 Type III pantothenate kinase DU202_00825 PF01925 Sulfite exporter TauE/SafE DU202_00827 PF02463 RecF/RecN/SMC N terminal domain DU202_00827 PF06470 SMC proteins Flexible Hinge Domain DU202_00829 PF00533 BRCA1 C Terminus (BRCT) domain DU202_00829 PF01653 NAD-dependent DNA ligase adenylation domain DU202_00829 PF03120 NAD-dependent DNA ligase OB-fold domain DU202_00829 PF12826 Helix-hairpin-helix motif DU202_00829 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DU202_00830 PF00210 Ferritin-like domain DU202_00831 PF07690 Major Facilitator Superfamily DU202_00832 PF00982 Glycosyltransferase family 20 DU202_00834 PF02358 Trehalose-phosphatase DU202_00835 PF12697 Alpha/beta hydrolase family DU202_00835 PF08241 Methyltransferase domain DU202_00836 PF06968 Biotin and Thiamin Synthesis associated domain DU202_00836 PF00202 Aminotransferase class-III DU202_00836 PF04055 Radical SAM superfamily DU202_00837 PF00155 Aminotransferase class I and II DU202_00840 PF01479 S4 domain DU202_00840 PF00849 RNA pseudouridylate synthase DU202_00841 PF04079 Segregation and condensation complex subunit ScpB DU202_00842 PF02616 Segregation and condensation protein ScpA DU202_00843 PF01300 Telomere recombination DU202_00844 PF04315 Elongation factor P hydroxylase DU202_00845 PF02620 Large ribosomal RNA subunit accumulation protein YceD DU202_00846 PF01783 Ribosomal L32p protein family DU202_00847 PF00698 Acyl transferase domain DU202_00849 PF00550 Phosphopantetheine attachment site DU202_00850 PF01476 LysM domain DU202_00850 PF04972 BON domain DU202_00851 PF02581 Thiamine monophosphate synthase DU202_00851 PF03070 TENA/THI-4/PQQC family DU202_00851 PF08543 Phosphomethylpyrimidine kinase DU202_00853 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DU202_00856 PF02261 Aspartate decarboxylase DU202_00857 PF01195 Peptidyl-tRNA hydrolase DU202_00858 PF01386 Ribosomal L25p family DU202_00859 PF14572 Phosphoribosyl synthetase-associated domain DU202_00859 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DU202_00864 PF03550 Outer membrane lipoprotein LolB DU202_00866 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DU202_00866 PF01488 Shikimate / quinate 5-dehydrogenase DU202_00866 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DU202_00867 PF01807 CHC2 zinc finger DU202_00867 PF08275 DNA primase catalytic core, N-terminal domain DU202_00867 PF08278 DNA primase DnaG DnaB-binding DU202_00867 PF10410 DnaB-helicase binding domain of primase DU202_00868 PF13525 Outer membrane lipoprotein DU202_00869 PF00849 RNA pseudouridylate synthase DU202_00869 PF01479 S4 domain DU202_00871 PF03358 NADPH-dependent FMN reductase DU202_00872 PF01668 SmpB protein DU202_00873 PF01467 Cytidylyltransferase-like DU202_00874 PF00037 4Fe-4S binding domain DU202_00877 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_00877 PF03466 LysR substrate binding domain DU202_00878 PF00180 Isocitrate/isopropylmalate dehydrogenase DU202_00879 PF02028 BCCT, betaine/carnitine/choline family transporter DU202_00881 PF07859 alpha/beta hydrolase fold DU202_00882 PF00355 Rieske [2Fe-2S] domain DU202_00882 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DU202_00883 PF00171 Aldehyde dehydrogenase family DU202_00884 PF00970 Oxidoreductase FAD-binding domain DU202_00884 PF00175 Oxidoreductase NAD-binding domain DU202_00884 PF00111 2Fe-2S iron-sulfur cluster binding domain DU202_00887 PF00795 Carbon-nitrogen hydrolase DU202_00887 PF02540 NAD synthase DU202_00889 PF02678 Pirin DU202_00889 PF05726 Pirin C-terminal cupin domain DU202_00891 PF00109 Beta-ketoacyl synthase, N-terminal domain DU202_00891 PF02801 Beta-ketoacyl synthase, C-terminal domain DU202_00893 PF00164 Ribosomal protein S12/S23 DU202_00894 PF00177 Ribosomal protein S7p/S5e DU202_00895 PF03144 Elongation factor Tu domain 2 DU202_00895 PF00679 Elongation factor G C-terminus DU202_00895 PF14492 Elongation Factor G, domain II DU202_00895 PF00009 Elongation factor Tu GTP binding domain DU202_00895 PF03764 Elongation factor G, domain IV DU202_00896 PF03143 Elongation factor Tu C-terminal domain DU202_00896 PF03144 Elongation factor Tu domain 2 DU202_00896 PF00009 Elongation factor Tu GTP binding domain DU202_00899 PF00583 Acetyltransferase (GNAT) family DU202_00900 PF04376 Arginine-tRNA-protein transferase, N terminus DU202_00900 PF04377 Arginine-tRNA-protein transferase, C terminus DU202_00901 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DU202_00902 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_00903 PF09397 Ftsk gamma domain DU202_00903 PF01580 FtsK/SpoIIIE family DU202_00903 PF17854 FtsK alpha domain DU202_00903 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DU202_00904 PF01810 LysE type translocator DU202_00908 PF03776 Septum formation topological specificity factor MinE DU202_00909 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DU202_00910 PF03775 Septum formation inhibitor MinC, C-terminal domain DU202_00912 PF01553 Acyltransferase DU202_00913 PF00691 OmpA family DU202_00913 PF13488 Glycine zipper DU202_00914 PF13361 UvrD-like helicase C-terminal domain DU202_00914 PF00580 UvrD/REP helicase N-terminal domain DU202_00915 PF00692 dUTPase DU202_00916 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DU202_00916 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DU202_00916 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DU202_00916 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DU202_00917 PF00696 Amino acid kinase family DU202_00919 PF13230 Glutamine amidotransferases class-II DU202_00921 PF13230 Glutamine amidotransferases class-II DU202_00922 PF01814 Hemerythrin HHE cation binding domain DU202_00924 PF03658 RnfH family Ubiquitin DU202_00925 PF04355 SmpA / OmlA family DU202_00926 PF01475 Ferric uptake regulator family DU202_00927 PF00437 Type II/IV secretion system protein DU202_00928 PF00437 Type II/IV secretion system protein DU202_00929 PF01168 Alanine racemase, N-terminal domain DU202_00931 PF00149 Calcineurin-like phosphoesterase DU202_00931 PF12320 Type 5 capsule protein repressor C-terminal domain DU202_00935 PF08338 Domain of unknown function (DUF1731) DU202_00935 PF01370 NAD dependent epimerase/dehydratase family DU202_00936 PF01266 FAD dependent oxidoreductase DU202_00937 PF00490 Delta-aminolevulinic acid dehydratase DU202_00938 PF03061 Thioesterase superfamily DU202_00939 PF13533 Biotin-lipoyl like DU202_00940 PF07690 Major Facilitator Superfamily DU202_00950 PF00929 Exonuclease DU202_00957 PF00717 Peptidase S24-like DU202_00957 PF01381 Helix-turn-helix DU202_00964 PF00145 C-5 cytosine-specific DNA methylase DU202_00965 PF01555 DNA methylase DU202_00971 PF01555 DNA methylase DU202_00973 PF01695 IstB-like ATP binding protein DU202_00981 PF00872 Transposase, Mutator family DU202_01018 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DU202_01026 PF02768 DNA polymerase III beta subunit, C-terminal domain DU202_01026 PF02767 DNA polymerase III beta subunit, central domain DU202_01026 PF00712 DNA polymerase III beta subunit, N-terminal domain DU202_01042 PF11799 impB/mucB/samB family C-terminal domain DU202_01042 PF11798 IMS family HHH motif DU202_01042 PF00817 impB/mucB/samB family DU202_01042 PF13438 Domain of unknown function (DUF4113) DU202_01043 PF00717 Peptidase S24-like DU202_01054 PF00083 Sugar (and other) transporter DU202_01055 PF00701 Dihydrodipicolinate synthetase family DU202_01060 PF13520 Amino acid permease DU202_01061 PF02574 Homocysteine S-methyltransferase DU202_01063 PF06039 Malate:quinone oxidoreductase (Mqo) DU202_01064 PF05199 GMC oxidoreductase DU202_01064 PF00732 GMC oxidoreductase DU202_01065 PF00171 Aldehyde dehydrogenase family DU202_01066 PF00440 Bacterial regulatory proteins, tetR family DU202_01066 PF13977 BetI-type transcriptional repressor, C-terminal DU202_01067 PF02028 BCCT, betaine/carnitine/choline family transporter DU202_01068 PF02028 BCCT, betaine/carnitine/choline family transporter DU202_01070 PF03061 Thioesterase superfamily DU202_01072 PF02492 CobW/HypB/UreG, nucleotide-binding domain DU202_01072 PF07683 Cobalamin synthesis protein cobW C-terminal domain DU202_01073 PF00375 Sodium:dicarboxylate symporter family DU202_01075 PF00375 Sodium:dicarboxylate symporter family DU202_01076 PF07152 YaeQ protein DU202_01077 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DU202_01078 PF14883 Hypothetical glycosyl hydrolase family 13 DU202_01078 PF01522 Polysaccharide deacetylase DU202_01079 PF00535 Glycosyl transferase family 2 DU202_01081 PF00378 Enoyl-CoA hydratase/isomerase DU202_01085 PF01614 Bacterial transcriptional regulator DU202_01085 PF09339 IclR helix-turn-helix domain DU202_01086 PF00355 Rieske [2Fe-2S] domain DU202_01088 PF00355 Rieske [2Fe-2S] domain DU202_01090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DU202_01091 PF14759 Reductase C-terminal DU202_01091 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_01092 PF07690 Major Facilitator Superfamily DU202_01094 PF12697 Alpha/beta hydrolase family DU202_01096 PF01958 Domain of unknown function DUF108 DU202_01096 PF03447 Homoserine dehydrogenase, NAD binding domain DU202_01097 PF00171 Aldehyde dehydrogenase family DU202_01098 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DU202_01098 PF00205 Thiamine pyrophosphate enzyme, central domain DU202_01098 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DU202_01100 PF07690 Major Facilitator Superfamily DU202_01101 PF01327 Polypeptide deformylase DU202_01102 PF04960 Glutaminase DU202_01103 PF02311 AraC-like ligand binding domain DU202_01103 PF12833 Helix-turn-helix domain DU202_01104 PF07690 Major Facilitator Superfamily DU202_01105 PF01263 Aldose 1-epimerase DU202_01107 PF03466 LysR substrate binding domain DU202_01107 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01109 PF07690 Major Facilitator Superfamily DU202_01110 PF00456 Transketolase, thiamine diphosphate binding domain DU202_01111 PF02779 Transketolase, pyrimidine binding domain DU202_01111 PF02780 Transketolase, C-terminal domain DU202_01112 PF02310 B12 binding domain DU202_01112 PF00809 Pterin binding enzyme DU202_01112 PF02574 Homocysteine S-methyltransferase DU202_01112 PF02607 B12 binding domain DU202_01112 PF02965 Vitamin B12 dependent methionine synthase, activation domain DU202_01113 PF01384 Phosphate transporter family DU202_01114 PF00291 Pyridoxal-phosphate dependent enzyme DU202_01117 PF03781 Sulfatase-modifying factor enzyme 1 DU202_01118 PF00884 Sulfatase DU202_01120 PF01106 NifU-like domain DU202_01120 PF01521 Iron-sulphur cluster biosynthesis DU202_01121 PF00593 TonB dependent receptor DU202_01121 PF07715 TonB-dependent Receptor Plug Domain DU202_01123 PF00561 alpha/beta hydrolase fold DU202_01125 PF00484 Carbonic anhydrase DU202_01126 PF13472 GDSL-like Lipase/Acylhydrolase family DU202_01127 PF00005 ABC transporter DU202_01129 PF01694 Rhomboid family DU202_01130 PF00912 Transglycosylase DU202_01131 PF13090 Polyphosphate kinase C-terminal domain 2 DU202_01131 PF02503 Polyphosphate kinase middle domain DU202_01131 PF13089 Polyphosphate kinase N-terminal domain DU202_01131 PF17941 Polyphosphate kinase C-terminal domain 1 DU202_01133 PF03466 LysR substrate binding domain DU202_01133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01134 PF00561 alpha/beta hydrolase fold DU202_01135 PF18113 Rubredoxin binding C-terminal domain DU202_01135 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_01136 PF00301 Rubredoxin DU202_01139 PF00152 tRNA synthetases class II (D, K and N) DU202_01139 PF01336 OB-fold nucleic acid binding domain DU202_01140 PF14052 Capsule assembly protein Wzi DU202_01142 PF01507 Phosphoadenosine phosphosulfate reductase family DU202_01143 PF00009 Elongation factor Tu GTP binding domain DU202_01146 PF03600 Citrate transporter DU202_01147 PF01595 Cyclin M transmembrane N-terminal domain DU202_01147 PF03471 Transporter associated domain DU202_01147 PF00571 CBS domain DU202_01148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01148 PF03466 LysR substrate binding domain DU202_01149 PF00463 Isocitrate lyase family DU202_01152 PF01774 UreD urease accessory protein DU202_01153 PF00547 Urease, gamma subunit DU202_01154 PF00699 Urease beta subunit DU202_01155 PF01979 Amidohydrolase family DU202_01155 PF00449 Urease alpha-subunit, N-terminal domain DU202_01156 PF01979 Amidohydrolase family DU202_01156 PF00449 Urease alpha-subunit, N-terminal domain DU202_01157 PF02814 UreE urease accessory protein, N-terminal domain DU202_01157 PF05194 UreE urease accessory protein, C-terminal domain DU202_01158 PF01730 UreF DU202_01159 PF02492 CobW/HypB/UreG, nucleotide-binding domain DU202_01162 PF00905 Penicillin binding protein transpeptidase domain DU202_01162 PF03717 Penicillin-binding Protein dimerisation domain DU202_01165 PF05191 Adenylate kinase, active site lid DU202_01166 PF00730 HhH-GPD superfamily base excision DNA repair protein DU202_01166 PF00633 Helix-hairpin-helix motif DU202_01166 PF10576 Iron-sulfur binding domain of endonuclease III DU202_01167 PF04060 Putative Fe-S cluster DU202_01168 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DU202_01168 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DU202_01170 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DU202_01171 PF02590 Predicted SPOUT methyltransferase DU202_01172 PF00004 ATPase family associated with various cellular activities (AAA) DU202_01172 PF05362 Lon protease (S16) C-terminal proteolytic domain DU202_01172 PF02190 ATP-dependent protease La (LON) substrate-binding domain DU202_01173 PF05662 Coiled stalk of trimeric autotransporter adhesin DU202_01173 PF13018 Extended Signal Peptide of Type V secretion system DU202_01173 PF03895 YadA-like membrane anchor domain DU202_01173 PF05658 Head domain of trimeric autotransporter adhesin DU202_01175 PF01812 5-formyltetrahydrofolate cyclo-ligase family DU202_01241 PF01476 LysM domain DU202_01241 PF01551 Peptidase family M23 DU202_01241 PF08525 Opacity-associated protein A N-terminal motif DU202_01252 PF00884 Sulfatase DU202_01252 PF08019 Phosphoethanolamine transferase EptA/EptB DU202_01259 PF05195 Aminopeptidase P, N-terminal domain DU202_01259 PF00557 Metallopeptidase family M24 DU202_01260 PF01494 FAD binding domain DU202_01261 PF01494 FAD binding domain DU202_01263 PF13411 MerR HTH family regulatory protein DU202_01265 PF01810 LysE type translocator DU202_01266 PF03466 LysR substrate binding domain DU202_01266 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01268 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DU202_01269 PF02021 Uncharacterised protein family UPF0102 DU202_01270 PF04972 BON domain DU202_01272 PF00293 NUDIX domain DU202_01272 PF09297 NADH pyrophosphatase zinc ribbon domain DU202_01274 PF00929 Exonuclease DU202_01275 PF01476 LysM domain DU202_01275 PF01476 LysM domain DU202_01275 PF01464 Transglycosylase SLT domain DU202_01275 PF01464 Transglycosylase SLT domain DU202_01276 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DU202_01277 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01278 PF12911 N-terminal TM domain of oligopeptide transport permease C DU202_01278 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01279 PF00005 ABC transporter DU202_01279 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DU202_01280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DU202_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_01281 PF00593 TonB dependent receptor DU202_01281 PF07715 TonB-dependent Receptor Plug Domain DU202_01283 PF00929 Exonuclease DU202_01284 PF01979 Amidohydrolase family DU202_01285 PF00360 Phytochrome region DU202_01285 PF00990 Diguanylate cyclase, GGDEF domain DU202_01285 PF01590 GAF domain DU202_01285 PF00563 EAL domain DU202_01286 PF00764 Arginosuccinate synthase DU202_01287 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_01287 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DU202_01289 PF00589 Phage integrase family DU202_01289 PF13356 Arm DNA-binding domain DU202_01293 PF00905 Penicillin binding protein transpeptidase domain DU202_01298 PF00583 Acetyltransferase (GNAT) family DU202_01314 PF05656 Protein of unknown function (DUF805) DU202_01319 PF02661 Fic/DOC family DU202_01321 PF02384 N-6 DNA Methylase DU202_01322 PF01420 Type I restriction modification DNA specificity domain DU202_01328 PF12419 SNF2 Helicase protein DU202_01328 PF00271 Helicase conserved C-terminal domain DU202_01328 PF00176 SNF2 family N-terminal domain DU202_01333 PF13610 DDE domain DU202_01334 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_01334 PF00403 Heavy-metal-associated domain DU202_01334 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DU202_01335 PF03203 MerC mercury resistance protein DU202_01337 PF09278 MerR, DNA binding DU202_01337 PF00376 MerR family regulatory protein DU202_01338 PF00665 Integrase core domain DU202_01339 PF01695 IstB-like ATP binding protein DU202_01341 PF00809 Pterin binding enzyme DU202_01342 PF00893 Small Multidrug Resistance protein DU202_01343 PF01909 Nucleotidyltransferase domain DU202_01343 PF13427 Domain of unknown function (DUF4111) DU202_01344 PF13610 DDE domain DU202_01345 PF13495 Phage integrase, N-terminal SAM-like domain DU202_01345 PF00589 Phage integrase family DU202_01346 PF00583 Acetyltransferase (GNAT) family DU202_01347 PF13427 Domain of unknown function (DUF4111) DU202_01347 PF01909 Nucleotidyltransferase domain DU202_01348 PF13610 DDE domain DU202_01349 PF13700 Domain of unknown function (DUF4158) DU202_01349 PF01526 Tn3 transposase DDE domain DU202_01350 PF13610 DDE domain DU202_01351 PF02909 Tetracyclin repressor-like, C-terminal domain DU202_01351 PF00440 Bacterial regulatory proteins, tetR family DU202_01353 PF02796 Helix-turn-helix domain of resolvase DU202_01353 PF00239 Resolvase, N terminal domain DU202_01354 PF13610 DDE domain DU202_01355 PF01292 Prokaryotic cytochrome b561 DU202_01357 PF01351 Ribonuclease HII DU202_01358 PF02599 Global regulator protein family DU202_01359 PF13840 ACT domain DU202_01359 PF01842 ACT domain DU202_01359 PF00696 Amino acid kinase family DU202_01360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DU202_01360 PF01411 tRNA synthetases class II (A) DU202_01360 PF02272 DHHA1 domain DU202_01361 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DU202_01361 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DU202_01362 PF13393 Histidyl-tRNA synthetase DU202_01363 PF00709 Adenylosuccinate synthetase DU202_01366 PF00248 Aldo/keto reductase family DU202_01367 PF00027 Cyclic nucleotide-binding domain DU202_01367 PF13545 Crp-like helix-turn-helix domain DU202_01368 PF02566 OsmC-like protein DU202_01371 PF00004 ATPase family associated with various cellular activities (AAA) DU202_01371 PF02861 Clp amino terminal domain, pathogenicity island component DU202_01371 PF07724 AAA domain (Cdc48 subfamily) DU202_01371 PF17871 AAA lid domain DU202_01371 PF10431 C-terminal, D2-small domain, of ClpB protein DU202_01374 PF01170 Putative RNA methylase family UPF0020 DU202_01374 PF02926 THUMP domain DU202_01374 PF10672 S-adenosylmethionine-dependent methyltransferase DU202_01376 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DU202_01376 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DU202_01377 PF01979 Amidohydrolase family DU202_01378 PF00691 OmpA family DU202_01378 PF13488 Glycine zipper DU202_01380 PF13417 Glutathione S-transferase, N-terminal domain DU202_01380 PF00043 Glutathione S-transferase, C-terminal domain DU202_01381 PF02390 Putative methyltransferase DU202_01383 PF02798 Glutathione S-transferase, N-terminal domain DU202_01383 PF00043 Glutathione S-transferase, C-terminal domain DU202_01385 PF13192 Thioredoxin domain DU202_01385 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_01389 PF00578 AhpC/TSA family DU202_01389 PF10417 C-terminal domain of 1-Cys peroxiredoxin DU202_01390 PF00270 DEAD/DEAH box helicase DU202_01390 PF11898 Domain of unknown function (DUF3418) DU202_01390 PF04408 Helicase associated domain (HA2) DU202_01390 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DU202_01390 PF00271 Helicase conserved C-terminal domain DU202_01391 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DU202_01391 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DU202_01393 PF07690 Major Facilitator Superfamily DU202_01394 PF03594 Benzoate membrane transport protein DU202_01395 PF00106 short chain dehydrogenase DU202_01396 PF00970 Oxidoreductase FAD-binding domain DU202_01396 PF00111 2Fe-2S iron-sulfur cluster binding domain DU202_01396 PF00175 Oxidoreductase NAD-binding domain DU202_01397 PF00866 Ring hydroxylating beta subunit DU202_01398 PF00355 Rieske [2Fe-2S] domain DU202_01398 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DU202_01399 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01399 PF03466 LysR substrate binding domain DU202_01400 PF00403 Heavy-metal-associated domain DU202_01401 PF00403 Heavy-metal-associated domain DU202_01402 PF00376 MerR family regulatory protein DU202_01402 PF09278 MerR, DNA binding DU202_01412 PF02601 Exonuclease VII, large subunit DU202_01412 PF13742 OB-fold nucleic acid binding domain DU202_01419 PF01810 LysE type translocator DU202_01420 PF00313 'Cold-shock' DNA-binding domain DU202_01422 PF14748 Pyrroline-5-carboxylate reductase dimerisation DU202_01422 PF03807 NADP oxidoreductase coenzyme F420-dependent DU202_01431 PF07690 Major Facilitator Superfamily DU202_01432 PF01638 HxlR-like helix-turn-helix DU202_01438 PF09190 DALR domain DU202_01438 PF01406 tRNA synthetases class I (C) catalytic domain DU202_01439 PF01380 SIS domain DU202_01439 PF00571 CBS domain DU202_01442 PF03968 OstA-like protein DU202_01443 PF12399 Branched-chain amino acid ATP-binding cassette transporter DU202_01443 PF00005 ABC transporter DU202_01444 PF02321 Outer membrane efflux protein DU202_01445 PF00005 ABC transporter DU202_01445 PF03412 Peptidase C39 family DU202_01445 PF00664 ABC transporter transmembrane region DU202_01447 PF01205 Uncharacterized protein family UPF0029 DU202_01448 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_01450 PF01596 O-methyltransferase DU202_01452 PF11953 Domain of unknown function (DUF3470) DU202_01452 PF00037 4Fe-4S binding domain DU202_01454 PF05188 MutS domain II DU202_01454 PF05192 MutS domain III DU202_01454 PF05190 MutS family domain IV DU202_01454 PF00488 MutS domain V DU202_01454 PF01624 MutS domain I DU202_01455 PF01037 Lrp/AsnC ligand binding domain DU202_01456 PF00892 EamA-like transporter family DU202_01457 PF00563 EAL domain DU202_01457 PF00990 Diguanylate cyclase, GGDEF domain DU202_01457 PF03707 Bacterial signalling protein N terminal repeat DU202_01458 PF03279 Bacterial lipid A biosynthesis acyltransferase DU202_01460 PF07690 Major Facilitator Superfamily DU202_01464 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DU202_01464 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DU202_01468 PF13419 Haloacid dehalogenase-like hydrolase DU202_01472 PF16671 Actin cross-linking domain DU202_01472 PF04717 Type VI secretion system, phage-baseplate injector DU202_01473 PF14220 Domain of unknown function (DUF4329) DU202_01473 PF05593 RHS Repeat DU202_01473 PF03527 RHS protein DU202_01476 PF03466 LysR substrate binding domain DU202_01476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01477 PF01566 Natural resistance-associated macrophage protein DU202_01478 PF03746 LamB/YcsF family DU202_01479 PF07286 Protein of unknown function (DUF1445) DU202_01481 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DU202_01481 PF00364 Biotin-requiring enzyme DU202_01481 PF00289 Biotin carboxylase, N-terminal domain DU202_01481 PF02785 Biotin carboxylase C-terminal domain DU202_01482 PF00654 Voltage gated chloride channel DU202_01487 PF00440 Bacterial regulatory proteins, tetR family DU202_01489 PF00107 Zinc-binding dehydrogenase DU202_01489 PF13823 Alcohol dehydrogenase GroES-associated DU202_01489 PF08240 Alcohol dehydrogenase GroES-like domain DU202_01492 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DU202_01492 PF02785 Biotin carboxylase C-terminal domain DU202_01492 PF00289 Biotin carboxylase, N-terminal domain DU202_01493 PF02525 Flavodoxin-like fold DU202_01494 PF01638 HxlR-like helix-turn-helix DU202_01498 PF08753 NikR C terminal nickel binding domain DU202_01498 PF01402 Ribbon-helix-helix protein, copG family DU202_01499 PF01425 Amidase DU202_01500 PF00497 Bacterial extracellular solute-binding proteins, family 3 DU202_01501 PF00005 ABC transporter DU202_01505 PF13817 IS66 C-terminal element DU202_01505 PF03050 Transposase IS66 family DU202_01505 PF13005 zinc-finger binding domain of transposase IS66 DU202_01505 PF13007 Transposase C of IS166 homeodomain DU202_01519 PF00691 OmpA family DU202_01519 PF01389 OmpA-like transmembrane domain DU202_01522 PF10431 C-terminal, D2-small domain, of ClpB protein DU202_01522 PF17871 AAA lid domain DU202_01522 PF00004 ATPase family associated with various cellular activities (AAA) DU202_01522 PF07724 AAA domain (Cdc48 subfamily) DU202_01528 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01528 PF03466 LysR substrate binding domain DU202_01530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DU202_01531 PF07690 Major Facilitator Superfamily DU202_01534 PF02677 Epoxyqueuosine reductase QueH DU202_01536 PF09278 MerR, DNA binding DU202_01536 PF00376 MerR family regulatory protein DU202_01539 PF00701 Dihydrodipicolinate synthetase family DU202_01541 PF00392 Bacterial regulatory proteins, gntR family DU202_01542 PF05544 Proline racemase DU202_01543 PF01266 FAD dependent oxidoreductase DU202_01545 PF04324 BFD-like [2Fe-2S] binding domain DU202_01545 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_01547 PF00083 Sugar (and other) transporter DU202_01548 PF00171 Aldehyde dehydrogenase family DU202_01549 PF13520 Amino acid permease DU202_01550 PF03315 Serine dehydratase beta chain DU202_01550 PF03313 Serine dehydratase alpha chain DU202_01551 PF00171 Aldehyde dehydrogenase family DU202_01551 PF01575 MaoC like domain DU202_01552 PF05138 Phenylacetic acid catabolic protein DU202_01553 PF06243 Phenylacetic acid degradation B DU202_01554 PF05138 Phenylacetic acid catabolic protein DU202_01555 PF01883 Iron-sulfur cluster assembly protein DU202_01556 PF00970 Oxidoreductase FAD-binding domain DU202_01556 PF00111 2Fe-2S iron-sulfur cluster binding domain DU202_01556 PF00175 Oxidoreductase NAD-binding domain DU202_01557 PF00378 Enoyl-CoA hydratase/isomerase DU202_01558 PF00378 Enoyl-CoA hydratase/isomerase DU202_01559 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DU202_01559 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DU202_01559 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DU202_01560 PF00108 Thiolase, N-terminal domain DU202_01560 PF02803 Thiolase, C-terminal domain DU202_01561 PF14535 AMP-binding enzyme C-terminal domain DU202_01561 PF00501 AMP-binding enzyme DU202_01562 PF07848 PaaX-like protein DU202_01562 PF08223 PaaX-like protein C-terminal domain DU202_01563 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_01564 PF03061 Thioesterase superfamily DU202_01571 PF00199 Catalase DU202_01572 PF01292 Prokaryotic cytochrome b561 DU202_01576 PF12697 Alpha/beta hydrolase family DU202_01577 PF01613 Flavin reductase like domain DU202_01578 PF00296 Luciferase-like monooxygenase DU202_01579 PF00171 Aldehyde dehydrogenase family DU202_01580 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DU202_01582 PF00171 Aldehyde dehydrogenase family DU202_01583 PF02627 Carboxymuconolactone decarboxylase family DU202_01584 PF03466 LysR substrate binding domain DU202_01584 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01585 PF02525 Flavodoxin-like fold DU202_01586 PF01614 Bacterial transcriptional regulator DU202_01586 PF09339 IclR helix-turn-helix domain DU202_01587 PF01494 FAD binding domain DU202_01588 PF07702 UTRA domain DU202_01588 PF00392 Bacterial regulatory proteins, gntR family DU202_01590 PF00005 ABC transporter DU202_01590 PF08402 TOBE domain DU202_01591 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01592 PF01266 FAD dependent oxidoreductase DU202_01593 PF00266 Aminotransferase class-V DU202_01594 PF13419 Haloacid dehalogenase-like hydrolase DU202_01598 PF07690 Major Facilitator Superfamily DU202_01599 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_01599 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_01599 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_01600 PF02515 CoA-transferase family III DU202_01601 PF09339 IclR helix-turn-helix domain DU202_01602 PF00378 Enoyl-CoA hydratase/isomerase DU202_01603 PF03060 Nitronate monooxygenase DU202_01604 PF07690 Major Facilitator Superfamily DU202_01605 PF09339 IclR helix-turn-helix domain DU202_01606 PF00108 Thiolase, N-terminal domain DU202_01606 PF02803 Thiolase, C-terminal domain DU202_01607 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DU202_01607 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DU202_01607 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DU202_01609 PF00378 Enoyl-CoA hydratase/isomerase DU202_01610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_01610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_01610 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_01611 PF07690 Major Facilitator Superfamily DU202_01612 PF01144 Coenzyme A transferase DU202_01613 PF01144 Coenzyme A transferase DU202_01615 PF07690 Major Facilitator Superfamily DU202_01617 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_01617 PF12806 Acetyl-CoA dehydrogenase C-terminal like DU202_01617 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_01617 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_01621 PF03466 LysR substrate binding domain DU202_01621 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01622 PF00682 HMGL-like DU202_01623 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DU202_01623 PF02785 Biotin carboxylase C-terminal domain DU202_01623 PF00289 Biotin carboxylase, N-terminal domain DU202_01623 PF00364 Biotin-requiring enzyme DU202_01624 PF00378 Enoyl-CoA hydratase/isomerase DU202_01625 PF01039 Carboxyl transferase domain DU202_01626 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_01626 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_01626 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_01627 PF00440 Bacterial regulatory proteins, tetR family DU202_01628 PF13193 AMP-binding enzyme C-terminal domain DU202_01628 PF00501 AMP-binding enzyme DU202_01632 PF03466 LysR substrate binding domain DU202_01632 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01642 PF00994 Probable molybdopterin binding domain DU202_01642 PF18146 Damage-inducible protein CinA KH domain DU202_01642 PF02464 Competence-damaged protein DU202_01645 PF18011 C-terminal domain found in long catalases DU202_01645 PF06628 Catalase-related immune-responsive DU202_01645 PF00199 Catalase DU202_01652 PF00717 Peptidase S24-like DU202_01654 PF01037 Lrp/AsnC ligand binding domain DU202_01654 PF13404 AsnC-type helix-turn-helix domain DU202_01658 PF00512 His Kinase A (phospho-acceptor) domain DU202_01658 PF09308 LuxQ, periplasmic DU202_01658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_01658 PF00072 Response regulator receiver domain DU202_01659 PF00072 Response regulator receiver domain DU202_01661 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01662 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01663 PF00005 ABC transporter DU202_01664 PF00497 Bacterial extracellular solute-binding proteins, family 3 DU202_01665 PF00497 Bacterial extracellular solute-binding proteins, family 3 DU202_01666 PF03466 LysR substrate binding domain DU202_01666 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01667 PF01810 LysE type translocator DU202_01668 PF00266 Aminotransferase class-V DU202_01670 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_01671 PF00581 Rhodanese-like domain DU202_01673 PF03466 LysR substrate binding domain DU202_01673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01674 PF02798 Glutathione S-transferase, N-terminal domain DU202_01675 PF14834 Glutathione S-transferase, C-terminal domain DU202_01675 PF02798 Glutathione S-transferase, N-terminal domain DU202_01676 PF03466 LysR substrate binding domain DU202_01676 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01677 PF03788 LrgA family DU202_01678 PF04172 LrgB-like family DU202_01679 PF00392 Bacterial regulatory proteins, gntR family DU202_01679 PF00155 Aminotransferase class I and II DU202_01682 PF07690 Major Facilitator Superfamily DU202_01683 PF16957 Malonate decarboxylase, alpha subunit, transporter DU202_01684 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DU202_01685 PF06857 Malonate decarboxylase delta subunit (MdcD) DU202_01686 PF01039 Carboxyl transferase domain DU202_01688 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DU202_01689 PF00698 Acyl transferase domain DU202_01692 PF03466 LysR substrate binding domain DU202_01692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01693 PF00155 Aminotransferase class I and II DU202_01693 PF00392 Bacterial regulatory proteins, gntR family DU202_01695 PF02322 Cytochrome bd terminal oxidase subunit II DU202_01696 PF01654 Cytochrome bd terminal oxidase subunit I DU202_01698 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DU202_01698 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_01698 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_01699 PF00296 Luciferase-like monooxygenase DU202_01701 PF00083 Sugar (and other) transporter DU202_01705 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DU202_01708 PF00005 ABC transporter DU202_01709 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01710 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DU202_01711 PF01177 Asp/Glu/Hydantoin racemase DU202_01712 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DU202_01714 PF03466 LysR substrate binding domain DU202_01714 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01716 PF01979 Amidohydrolase family DU202_01716 PF13382 Adenine deaminase C-terminal domain DU202_01720 PF03960 ArsC family DU202_01721 PF01022 Bacterial regulatory protein, arsR family DU202_01722 PF01758 Sodium Bile acid symporter family DU202_01723 PF03466 LysR substrate binding domain DU202_01723 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01726 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_01726 PF13192 Thioredoxin domain DU202_01729 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_01730 PF00588 SpoU rRNA Methylase family DU202_01731 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DU202_01731 PF02811 PHP domain DU202_01731 PF07733 Bacterial DNA polymerase III alpha NTPase domain DU202_01731 PF01336 OB-fold nucleic acid binding domain DU202_01731 PF14579 Helix-hairpin-helix motif DU202_01732 PF17763 Glutaminase/Asparaginase C-terminal domain DU202_01732 PF00710 Asparaginase, N-terminal DU202_01733 PF00375 Sodium:dicarboxylate symporter family DU202_01734 PF00155 Aminotransferase class I and II DU202_01735 PF01641 SelR domain DU202_01736 PF00255 Glutathione peroxidase DU202_01737 PF12833 Helix-turn-helix domain DU202_01737 PF12852 Cupin DU202_01739 PF00155 Aminotransferase class I and II DU202_01740 PF01909 Nucleotidyltransferase domain DU202_01740 PF01966 HD domain DU202_01740 PF08335 GlnD PII-uridylyltransferase DU202_01741 PF02222 ATP-grasp domain DU202_01744 PF05437 Branched-chain amino acid transport protein (AzlD) DU202_01745 PF03591 AzlC protein DU202_01750 PF01926 50S ribosome-binding GTPase DU202_01750 PF06071 Protein of unknown function (DUF933) DU202_01751 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01752 PF09383 NIL domain DU202_01752 PF00005 ABC transporter DU202_01753 PF03180 NLPA lipoprotein DU202_01754 PF03180 NLPA lipoprotein DU202_01755 PF00296 Luciferase-like monooxygenase DU202_01757 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DU202_01757 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_01761 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01762 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01763 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01764 PF00005 ABC transporter DU202_01766 PF01037 Lrp/AsnC ligand binding domain DU202_01767 PF01709 Transcriptional regulator DU202_01769 PF00440 Bacterial regulatory proteins, tetR family DU202_01778 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_01778 PF03466 LysR substrate binding domain DU202_01780 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DU202_01782 PF00892 EamA-like transporter family DU202_01786 PF00577 Outer membrane usher protein DU202_01786 PF13954 PapC N-terminal domain DU202_01786 PF13953 PapC C-terminal domain DU202_01788 PF02753 Pili assembly chaperone PapD, C-terminal domain DU202_01788 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DU202_01789 PF16970 Type-1 fimbrial protein, A DU202_01793 PF04055 Radical SAM superfamily DU202_01793 PF06968 Biotin and Thiamin Synthesis associated domain DU202_01794 PF08331 Domain of unknown function (DUF1730) DU202_01795 PF03853 YjeF-related protein N-terminus DU202_01795 PF01256 Carbohydrate kinase DU202_01796 PF02075 Crossover junction endodeoxyribonuclease RuvC DU202_01799 PF00905 Penicillin binding protein transpeptidase domain DU202_01803 PF00438 S-adenosylmethionine synthetase, N-terminal domain DU202_01803 PF02772 S-adenosylmethionine synthetase, central domain DU202_01803 PF02773 S-adenosylmethionine synthetase, C-terminal domain DU202_01804 PF02780 Transketolase, C-terminal domain DU202_01804 PF02779 Transketolase, pyrimidine binding domain DU202_01804 PF00456 Transketolase, thiamine diphosphate binding domain DU202_01806 PF04264 YceI-like domain DU202_01808 PF09992 Phosphodiester glycosidase DU202_01810 PF05958 tRNA (Uracil-5-)-methyltransferase DU202_01811 PF04229 GrpB protein DU202_01812 PF01619 Proline dehydrogenase DU202_01812 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DU202_01812 PF00171 Aldehyde dehydrogenase family DU202_01812 PF14850 DNA-binding domain of Proline dehydrogenase DU202_01813 PF01037 Lrp/AsnC ligand binding domain DU202_01814 PF00474 Sodium:solute symporter family DU202_01815 PF02146 Sir2 family DU202_01817 PF01597 Glycine cleavage H-protein DU202_01818 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DU202_01818 PF12833 Helix-turn-helix domain DU202_01820 PF00664 ABC transporter transmembrane region DU202_01820 PF00005 ABC transporter DU202_01821 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DU202_01822 PF06912 Protein of unknown function (DUF1275) DU202_01823 PF00375 Sodium:dicarboxylate symporter family DU202_01826 PF08007 Cupin superfamily protein DU202_01827 PF02545 Maf-like protein DU202_01829 PF00162 Phosphoglycerate kinase DU202_01831 PF01116 Fructose-bisphosphate aldolase class-II DU202_01832 PF09312 SurA N-terminal domain DU202_01832 PF00639 PPIC-type PPIASE domain DU202_01833 PF04453 LPS transport system D DU202_01833 PF03968 OstA-like protein DU202_01834 PF01636 Phosphotransferase enzyme family DU202_01835 PF00483 Nucleotidyl transferase DU202_01836 PF02527 rRNA small subunit methyltransferase G DU202_01837 PF13614 AAA domain DU202_01838 PF02195 ParB-like nuclease domain DU202_01838 PF17762 HTH domain found in ParB protein DU202_01839 PF01618 MotA/TolQ/ExbB proton channel family DU202_01841 PF00664 ABC transporter transmembrane region DU202_01841 PF00005 ABC transporter DU202_01842 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DU202_01843 PF02348 Cytidylyltransferase DU202_01844 PF09115 DNA polymerase III, delta subunit, C terminal DU202_01846 PF01026 TatD related DNase DU202_01849 PF07963 Prokaryotic N-terminal methylation motif DU202_01849 PF02501 Type II secretion system (T2SS), protein I DU202_01850 PF11612 Type II secretion system (T2SS), protein J DU202_01850 PF07963 Prokaryotic N-terminal methylation motif DU202_01851 PF03934 Type II secretion system (T2SS), protein K DU202_01853 PF03167 Uracil DNA glycosylase superfamily DU202_01855 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DU202_01857 PF02224 Cytidylate kinase DU202_01858 PF00575 S1 RNA binding domain DU202_01859 PF00216 Bacterial DNA-binding protein DU202_01861 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DU202_01864 PF00743 Flavin-binding monooxygenase-like DU202_01866 PF03969 AFG1-like ATPase DU202_01867 PF00589 Phage integrase family DU202_01867 PF02899 Phage integrase, N-terminal SAM-like domain DU202_01880 PF03796 DnaB-like helicase C terminal domain DU202_01880 PF00772 DnaB-like helicase N terminal domain DU202_01897 PF04860 Phage portal protein DU202_01909 PF01464 Transglycosylase SLT domain DU202_01909 PF10145 Phage-related minor tail protein DU202_01909 PF01551 Peptidase family M23 DU202_01922 PF01274 Malate synthase DU202_01924 PF02472 Biopolymer transport protein ExbD/TolR DU202_01925 PF02472 Biopolymer transport protein ExbD/TolR DU202_01926 PF01618 MotA/TolQ/ExbB proton channel family DU202_01929 PF00593 TonB dependent receptor DU202_01929 PF07715 TonB-dependent Receptor Plug Domain DU202_01933 PF01432 Peptidase family M3 DU202_01934 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01935 PF00528 Binding-protein-dependent transport system inner membrane component DU202_01936 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DU202_01936 PF00005 ABC transporter DU202_01939 PF00459 Inositol monophosphatase family DU202_01941 PF01649 Ribosomal protein S20 DU202_01942 PF13460 NAD(P)H-binding DU202_01943 PF03737 Aldolase/RraA DU202_01947 PF02559 CarD-like/TRCF domain DU202_01947 PF17757 UvrB interaction domain DU202_01947 PF03461 TRCF domain DU202_01947 PF00271 Helicase conserved C-terminal domain DU202_01947 PF00270 DEAD/DEAH box helicase DU202_01949 PF00211 Adenylate and Guanylate cyclase catalytic domain DU202_01950 PF00111 2Fe-2S iron-sulfur cluster binding domain DU202_01951 PF00012 Hsp70 protein DU202_01952 PF07743 HSCB C-terminal oligomerisation domain DU202_01952 PF00226 DnaJ domain DU202_01953 PF01521 Iron-sulphur cluster biosynthesis DU202_01954 PF01592 NifU-like N terminal domain DU202_01955 PF00266 Aminotransferase class-V DU202_01956 PF02082 Transcriptional regulator DU202_01959 PF00216 Bacterial DNA-binding protein DU202_01960 PF09312 SurA N-terminal domain DU202_01960 PF00639 PPIC-type PPIASE domain DU202_01961 PF12833 Helix-turn-helix domain DU202_01961 PF12852 Cupin DU202_01962 PF00487 Fatty acid desaturase DU202_01963 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_01963 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_01963 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_01964 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_01964 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_01964 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_01965 PF03109 ABC1 family DU202_01967 PF04073 Aminoacyl-tRNA editing domain DU202_01968 PF04183 IucA / IucC family DU202_01968 PF06276 Ferric iron reductase FhuF-like transporter DU202_01969 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DU202_01970 PF07690 Major Facilitator Superfamily DU202_01971 PF04183 IucA / IucC family DU202_01971 PF06276 Ferric iron reductase FhuF-like transporter DU202_01972 PF06276 Ferric iron reductase FhuF-like transporter DU202_01972 PF04183 IucA / IucC family DU202_01975 PF07715 TonB-dependent Receptor Plug Domain DU202_01975 PF00593 TonB dependent receptor DU202_01980 PF13419 Haloacid dehalogenase-like hydrolase DU202_01982 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DU202_01983 PF02277 Phosphoribosyltransferase DU202_01986 PF02654 Cobalamin-5-phosphate synthase DU202_01989 PF00793 DAHP synthetase I family DU202_01990 PF01925 Sulfite exporter TauE/SafE DU202_01994 PF07715 TonB-dependent Receptor Plug Domain DU202_01994 PF00593 TonB dependent receptor DU202_01995 PF02684 Lipid-A-disaccharide synthetase DU202_01997 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DU202_01998 PF00005 ABC transporter DU202_02005 PF01230 HIT domain DU202_02011 PF08241 Methyltransferase domain DU202_02012 PF00561 alpha/beta hydrolase fold DU202_02013 PF01053 Cys/Met metabolism PLP-dependent enzyme DU202_02015 PF02575 YbaB/EbfC DNA-binding family DU202_02016 PF02132 RecR protein DU202_02016 PF13662 Toprim domain DU202_02017 PF00570 HRDC domain DU202_02017 PF01612 3'-5' exonuclease DU202_02021 PF05166 YcgL domain DU202_02023 PF00004 ATPase family associated with various cellular activities (AAA) DU202_02023 PF01434 Peptidase family M41 DU202_02023 PF17862 AAA+ lid domain DU202_02025 PF00291 Pyridoxal-phosphate dependent enzyme DU202_02026 PF05175 Methyltransferase small domain DU202_02027 PF01264 Chorismate synthase DU202_02028 PF00990 Diguanylate cyclase, GGDEF domain DU202_02028 PF08448 PAS fold DU202_02031 PF04055 Radical SAM superfamily DU202_02032 PF00676 Dehydrogenase E1 component DU202_02033 PF02780 Transketolase, C-terminal domain DU202_02033 PF02779 Transketolase, pyrimidine binding domain DU202_02034 PF02817 e3 binding domain DU202_02034 PF00364 Biotin-requiring enzyme DU202_02034 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DU202_02035 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_02035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DU202_02036 PF00106 short chain dehydrogenase DU202_02037 PF00107 Zinc-binding dehydrogenase DU202_02037 PF08240 Alcohol dehydrogenase GroES-like domain DU202_02038 PF01062 Bestrophin, RFP-TM, chloride channel DU202_02039 PF00072 Response regulator receiver domain DU202_02039 PF00158 Sigma-54 interaction domain DU202_02039 PF02954 Bacterial regulatory protein, Fis family DU202_02040 PF04273 Putative phosphatase (DUF442) DU202_02040 PF00753 Metallo-beta-lactamase superfamily DU202_02041 PF04273 Putative phosphatase (DUF442) DU202_02041 PF00753 Metallo-beta-lactamase superfamily DU202_02042 PF01925 Sulfite exporter TauE/SafE DU202_02045 PF12833 Helix-turn-helix domain DU202_02045 PF06445 GyrI-like small molecule binding domain DU202_02046 PF01638 HxlR-like helix-turn-helix DU202_02047 PF02525 Flavodoxin-like fold DU202_02052 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DU202_02053 PF00528 Binding-protein-dependent transport system inner membrane component DU202_02054 PF00005 ABC transporter DU202_02057 PF00083 Sugar (and other) transporter DU202_02059 PF07715 TonB-dependent Receptor Plug Domain DU202_02059 PF00593 TonB dependent receptor DU202_02060 PF10415 Fumarase C C-terminus DU202_02060 PF00206 Lyase DU202_02063 PF03466 LysR substrate binding domain DU202_02063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02066 PF03466 LysR substrate binding domain DU202_02067 PF03466 LysR substrate binding domain DU202_02067 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02068 PF00108 Thiolase, N-terminal domain DU202_02068 PF02803 Thiolase, C-terminal domain DU202_02069 PF02667 Short chain fatty acid transporter DU202_02070 PF01144 Coenzyme A transferase DU202_02071 PF01144 Coenzyme A transferase DU202_02072 PF03466 LysR substrate binding domain DU202_02072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02076 PF06719 AraC-type transcriptional regulator N-terminus DU202_02076 PF12833 Helix-turn-helix domain DU202_02077 PF07690 Major Facilitator Superfamily DU202_02078 PF01738 Dienelactone hydrolase family DU202_02081 PF01613 Flavin reductase like domain DU202_02083 PF14525 AraC-binding-like domain DU202_02083 PF12833 Helix-turn-helix domain DU202_02084 PF00175 Oxidoreductase NAD-binding domain DU202_02084 PF00111 2Fe-2S iron-sulfur cluster binding domain DU202_02084 PF00970 Oxidoreductase FAD-binding domain DU202_02085 PF00866 Ring hydroxylating beta subunit DU202_02086 PF00355 Rieske [2Fe-2S] domain DU202_02086 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DU202_02087 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02087 PF03459 TOBE domain DU202_02089 PF00528 Binding-protein-dependent transport system inner membrane component DU202_02090 PF00005 ABC transporter DU202_02090 PF03459 TOBE domain DU202_02091 PF00106 short chain dehydrogenase DU202_02092 PF00857 Isochorismatase family DU202_02092 PF00550 Phosphopantetheine attachment site DU202_02094 PF00149 Calcineurin-like phosphoesterase DU202_02095 PF17941 Polyphosphate kinase C-terminal domain 1 DU202_02095 PF02503 Polyphosphate kinase middle domain DU202_02095 PF13089 Polyphosphate kinase N-terminal domain DU202_02095 PF13090 Polyphosphate kinase C-terminal domain 2 DU202_02096 PF12706 Beta-lactamase superfamily domain DU202_02097 PF03070 TENA/THI-4/PQQC family DU202_02098 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DU202_02099 PF04055 Radical SAM superfamily DU202_02099 PF13186 Iron-sulfur cluster-binding domain DU202_02100 PF01244 Membrane dipeptidase (Peptidase family M19) DU202_02104 PF13091 PLD-like domain DU202_02107 PF00199 Catalase DU202_02109 PF00107 Zinc-binding dehydrogenase DU202_02109 PF08240 Alcohol dehydrogenase GroES-like domain DU202_02111 PF00419 Fimbrial protein DU202_02112 PF13953 PapC C-terminal domain DU202_02112 PF13954 PapC N-terminal domain DU202_02112 PF00577 Outer membrane usher protein DU202_02113 PF02753 Pili assembly chaperone PapD, C-terminal domain DU202_02113 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DU202_02114 PF16970 Type-1 fimbrial protein, A DU202_02119 PF01266 FAD dependent oxidoreductase DU202_02122 PF01593 Flavin containing amine oxidoreductase DU202_02123 PF00743 Flavin-binding monooxygenase-like DU202_02124 PF12146 Serine aminopeptidase, S33 DU202_02125 PF12146 Serine aminopeptidase, S33 DU202_02126 PF02321 Outer membrane efflux protein DU202_02127 PF00873 AcrB/AcrD/AcrF family DU202_02128 PF00529 HlyD membrane-fusion protein of T1SS DU202_02128 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DU202_02129 PF00486 Transcriptional regulatory protein, C terminal DU202_02129 PF00072 Response regulator receiver domain DU202_02130 PF00512 His Kinase A (phospho-acceptor) domain DU202_02130 PF00672 HAMP domain DU202_02130 PF16527 Two-component sensor protein CpxA, periplasmic domain DU202_02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_02132 PF12833 Helix-turn-helix domain DU202_02132 PF02311 AraC-like ligand binding domain DU202_02133 PF12146 Serine aminopeptidase, S33 DU202_02140 PF13291 ACT domain DU202_02140 PF02824 TGS domain DU202_02140 PF04607 Region found in RelA / SpoT proteins DU202_02142 PF01975 Survival protein SurE DU202_02146 PF00583 Acetyltransferase (GNAT) family DU202_02153 PF07690 Major Facilitator Superfamily DU202_02154 PF13533 Biotin-lipoyl like DU202_02156 PF13533 Biotin-lipoyl like DU202_02157 PF01425 Amidase DU202_02175 PF10124 Mu-like prophage major head subunit gpT DU202_02178 PF05069 Phage virion morphogenesis family DU202_02179 PF04233 Phage Mu protein F like protein DU202_02180 PF06074 Protein of unknown function (DUF935) DU202_02183 PF03237 Terminase-like family DU202_02184 PF11985 Protein of unknown function (DUF3486) DU202_02202 PF00216 Bacterial DNA-binding protein DU202_02209 PF00196 Bacterial regulatory proteins, luxR family DU202_02227 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DU202_02228 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DU202_02228 PF14572 Phosphoribosyl synthetase-associated domain DU202_02232 PF00005 ABC transporter DU202_02236 PF00107 Zinc-binding dehydrogenase DU202_02236 PF08240 Alcohol dehydrogenase GroES-like domain DU202_02239 PF06719 AraC-type transcriptional regulator N-terminus DU202_02239 PF12833 Helix-turn-helix domain DU202_02240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DU202_02240 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DU202_02241 PF07690 Major Facilitator Superfamily DU202_02242 PF01370 NAD dependent epimerase/dehydratase family DU202_02243 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02243 PF03466 LysR substrate binding domain DU202_02245 PF00920 Dehydratase family DU202_02246 PF00171 Aldehyde dehydrogenase family DU202_02249 PF00529 HlyD membrane-fusion protein of T1SS DU202_02249 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DU202_02257 PF03737 Aldolase/RraA DU202_02258 PF01842 ACT domain DU202_02258 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DU202_02258 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DU202_02259 PF07690 Major Facilitator Superfamily DU202_02263 PF03466 LysR substrate binding domain DU202_02263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02265 PF08450 SMP-30/Gluconolactonase/LRE-like region DU202_02268 PF04909 Amidohydrolase DU202_02269 PF07690 Major Facilitator Superfamily DU202_02278 PF13332 Hemagglutinin repeat DU202_02278 PF05860 haemagglutination activity domain DU202_02278 PF13018 Extended Signal Peptide of Type V secretion system DU202_02278 PF04829 Pre-toxin domain with VENN motif DU202_02279 PF08479 POTRA domain, ShlB-type DU202_02279 PF17287 POTRA domain DU202_02279 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DU202_02281 PF07687 Peptidase dimerisation domain DU202_02281 PF01546 Peptidase family M20/M25/M40 DU202_02283 PF00999 Sodium/hydrogen exchanger family DU202_02283 PF02254 TrkA-N domain DU202_02284 PF07995 Glucose / Sorbosone dehydrogenase DU202_02285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02285 PF03466 LysR substrate binding domain DU202_02286 PF00857 Isochorismatase family DU202_02288 PF08359 YsiA-like protein, C-terminal region DU202_02288 PF00440 Bacterial regulatory proteins, tetR family DU202_02289 PF12706 Beta-lactamase superfamily domain DU202_02291 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_02293 PF00376 MerR family regulatory protein DU202_02293 PF09278 MerR, DNA binding DU202_02294 PF01872 RibD C-terminal domain DU202_02295 PF00106 short chain dehydrogenase DU202_02296 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_02296 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DU202_02299 PF01047 MarR family DU202_02300 PF07859 alpha/beta hydrolase fold DU202_02303 PF06628 Catalase-related immune-responsive DU202_02303 PF00199 Catalase DU202_02304 PF00561 alpha/beta hydrolase fold DU202_02306 PF00171 Aldehyde dehydrogenase family DU202_02307 PF00107 Zinc-binding dehydrogenase DU202_02307 PF08240 Alcohol dehydrogenase GroES-like domain DU202_02308 PF00474 Sodium:solute symporter family DU202_02309 PF04341 Protein of unknown function, DUF485 DU202_02310 PF13193 AMP-binding enzyme C-terminal domain DU202_02310 PF00501 AMP-binding enzyme DU202_02311 PF06506 Propionate catabolism activator DU202_02311 PF00158 Sigma-54 interaction domain DU202_02311 PF02954 Bacterial regulatory protein, Fis family DU202_02313 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_02313 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_02313 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_02317 PF00171 Aldehyde dehydrogenase family DU202_02319 PF07690 Major Facilitator Superfamily DU202_02320 PF00920 Dehydratase family DU202_02321 PF00392 Bacterial regulatory proteins, gntR family DU202_02321 PF07729 FCD domain DU202_02323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02323 PF03466 LysR substrate binding domain DU202_02324 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DU202_02324 PF13378 Enolase C-terminal domain-like DU202_02325 PF02426 Muconolactone delta-isomerase DU202_02326 PF04444 Catechol dioxygenase N terminus DU202_02326 PF00775 Dioxygenase DU202_02327 PF01144 Coenzyme A transferase DU202_02328 PF01144 Coenzyme A transferase DU202_02329 PF02803 Thiolase, C-terminal domain DU202_02329 PF00108 Thiolase, N-terminal domain DU202_02330 PF12146 Serine aminopeptidase, S33 DU202_02331 PF01804 Penicillin amidase DU202_02332 PF00171 Aldehyde dehydrogenase family DU202_02334 PF01179 Copper amine oxidase, enzyme domain DU202_02334 PF07833 Copper amine oxidase N-terminal domain DU202_02334 PF02727 Copper amine oxidase, N2 domain DU202_02334 PF02728 Copper amine oxidase, N3 domain DU202_02335 PF02311 AraC-like ligand binding domain DU202_02335 PF12833 Helix-turn-helix domain DU202_02336 PF01613 Flavin reductase like domain DU202_02337 PF00111 2Fe-2S iron-sulfur cluster binding domain DU202_02337 PF00175 Oxidoreductase NAD-binding domain DU202_02340 PF00355 Rieske [2Fe-2S] domain DU202_02340 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DU202_02343 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DU202_02344 PF01425 Amidase DU202_02346 PF07690 Major Facilitator Superfamily DU202_02348 PF00106 short chain dehydrogenase DU202_02351 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_02351 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_02351 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_02352 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02352 PF03466 LysR substrate binding domain DU202_02353 PF09339 IclR helix-turn-helix domain DU202_02353 PF01614 Bacterial transcriptional regulator DU202_02354 PF00753 Metallo-beta-lactamase superfamily DU202_02356 PF04143 Sulphur transport DU202_02358 PF13360 PQQ-like domain DU202_02358 PF01011 PQQ enzyme repeat DU202_02359 PF04966 Carbohydrate-selective porin, OprB family DU202_02360 PF05048 Periplasmic copper-binding protein (NosD) DU202_02361 PF01487 Type I 3-dehydroquinase DU202_02362 PF00775 Dioxygenase DU202_02363 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DU202_02363 PF00775 Dioxygenase DU202_02364 PF02627 Carboxymuconolactone decarboxylase family DU202_02365 PF07690 Major Facilitator Superfamily DU202_02366 PF00561 alpha/beta hydrolase fold DU202_02367 PF10397 Adenylosuccinate lyase C-terminus DU202_02367 PF00206 Lyase DU202_02368 PF00108 Thiolase, N-terminal domain DU202_02368 PF02803 Thiolase, C-terminal domain DU202_02369 PF01144 Coenzyme A transferase DU202_02370 PF01144 Coenzyme A transferase DU202_02371 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DU202_02372 PF04977 Septum formation initiator DU202_02373 PF04239 Protein of unknown function (DUF421) DU202_02374 PF00113 Enolase, C-terminal TIM barrel domain DU202_02374 PF03952 Enolase, N-terminal domain DU202_02375 PF00793 DAHP synthetase I family DU202_02376 PF06418 CTP synthase N-terminus DU202_02376 PF00117 Glutamine amidotransferase class-I DU202_02382 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_02382 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DU202_02385 PF00793 DAHP synthetase I family DU202_02386 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DU202_02387 PF10431 C-terminal, D2-small domain, of ClpB protein DU202_02387 PF17871 AAA lid domain DU202_02387 PF07724 AAA domain (Cdc48 subfamily) DU202_02387 PF00004 ATPase family associated with various cellular activities (AAA) DU202_02387 PF02861 Clp amino terminal domain, pathogenicity island component DU202_02388 PF02617 ATP-dependent Clp protease adaptor protein ClpS DU202_02390 PF01118 Semialdehyde dehydrogenase, NAD binding domain DU202_02390 PF02774 Semialdehyde dehydrogenase, dimerisation domain DU202_02393 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DU202_02394 PF00585 C-terminal regulatory domain of Threonine dehydratase DU202_02394 PF00291 Pyridoxal-phosphate dependent enzyme DU202_02395 PF02254 TrkA-N domain DU202_02395 PF02080 TrkA-C domain DU202_02396 PF02386 Cation transport protein DU202_02397 PF02253 Phospholipase A1 DU202_02398 PF08367 Peptidase M16C associated DU202_02398 PF00675 Insulinase (Peptidase family M16) DU202_02398 PF05193 Peptidase M16 inactive domain DU202_02399 PF07715 TonB-dependent Receptor Plug Domain DU202_02399 PF00593 TonB dependent receptor DU202_02400 PF00294 pfkB family carbohydrate kinase DU202_02402 PF07290 Protein of unknown function (DUF1449) DU202_02406 PF01654 Cytochrome bd terminal oxidase subunit I DU202_02407 PF02322 Cytochrome bd terminal oxidase subunit II DU202_02408 PF08173 Membrane bound YbgT-like protein DU202_02411 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DU202_02413 PF02881 SRP54-type protein, helical bundle domain DU202_02413 PF00448 SRP54-type protein, GTPase domain DU202_02418 PF00478 IMP dehydrogenase / GMP reductase domain DU202_02418 PF00571 CBS domain DU202_02419 PF00202 Aminotransferase class-III DU202_02420 PF00462 Glutaredoxin DU202_02422 PF03466 LysR substrate binding domain DU202_02422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02423 PF00557 Metallopeptidase family M24 DU202_02424 PF05525 Branched-chain amino acid transport protein DU202_02429 PF00381 PTS HPr component phosphorylation site DU202_02429 PF02896 PEP-utilising enzyme, TIM barrel domain DU202_02429 PF00391 PEP-utilising enzyme, mobile domain DU202_02429 PF05524 PEP-utilising enzyme, N-terminal DU202_02429 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DU202_02430 PF00294 pfkB family carbohydrate kinase DU202_02431 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DU202_02431 PF02378 Phosphotransferase system, EIIC DU202_02436 PF00563 EAL domain DU202_02436 PF00990 Diguanylate cyclase, GGDEF domain DU202_02436 PF03707 Bacterial signalling protein N terminal repeat DU202_02438 PF07995 Glucose / Sorbosone dehydrogenase DU202_02439 PF02586 SOS response associated peptidase (SRAP) DU202_02440 PF00916 Sulfate permease family DU202_02440 PF01740 STAS domain DU202_02441 PF05922 Peptidase inhibitor I9 DU202_02441 PF00082 Subtilase family DU202_02444 PF00324 Amino acid permease DU202_02445 PF00266 Aminotransferase class-V DU202_02446 PF01037 Lrp/AsnC ligand binding domain DU202_02451 PF13419 Haloacid dehalogenase-like hydrolase DU202_02452 PF01479 S4 domain DU202_02453 PF00154 recA bacterial DNA recombination protein DU202_02454 PF02631 RecX family DU202_02456 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DU202_02456 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_02457 PF07977 FabA-like domain DU202_02458 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DU202_02458 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_02460 PF01103 Surface antigen DU202_02460 PF07244 Surface antigen variable number repeat DU202_02461 PF02163 Peptidase family M50 DU202_02461 PF17820 PDZ domain DU202_02461 PF13180 PDZ domain DU202_02462 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DU202_02462 PF13288 DXP reductoisomerase C-terminal domain DU202_02462 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DU202_02464 PF01255 Putative undecaprenyl diphosphate synthase DU202_02465 PF01765 Ribosome recycling factor DU202_02466 PF00696 Amino acid kinase family DU202_02467 PF04055 Radical SAM superfamily DU202_02467 PF00919 Uncharacterized protein family UPF0004 DU202_02467 PF18693 TRAM domain DU202_02468 PF00989 PAS fold DU202_02468 PF00512 His Kinase A (phospho-acceptor) domain DU202_02468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_02469 PF00072 Response regulator receiver domain DU202_02469 PF00158 Sigma-54 interaction domain DU202_02469 PF02954 Bacterial regulatory protein, Fis family DU202_02470 PF00440 Bacterial regulatory proteins, tetR family DU202_02472 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DU202_02472 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DU202_02474 PF02542 YgbB family DU202_02476 PF01266 FAD dependent oxidoreductase DU202_02481 PF10415 Fumarase C C-terminus DU202_02481 PF00206 Lyase DU202_02482 PF16363 GDP-mannose 4,6 dehydratase DU202_02483 PF02635 DsrE/DsrF-like family DU202_02487 PF00892 EamA-like transporter family DU202_02488 PF00392 Bacterial regulatory proteins, gntR family DU202_02488 PF00155 Aminotransferase class I and II DU202_02489 PF01638 HxlR-like helix-turn-helix DU202_02490 PF00994 Probable molybdopterin binding domain DU202_02490 PF03453 MoeA N-terminal region (domain I and II) DU202_02490 PF03454 MoeA C-terminal region (domain IV) DU202_02491 PF01967 MoaC family DU202_02491 PF00994 Probable molybdopterin binding domain DU202_02492 PF02391 MoaE protein DU202_02494 PF04055 Radical SAM superfamily DU202_02494 PF06463 Molybdenum Cofactor Synthesis C DU202_02495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DU202_02495 PF00384 Molybdopterin oxidoreductase DU202_02495 PF01568 Molydopterin dinucleotide binding domain DU202_02496 PF12804 MobA-like NTP transferase domain DU202_02497 PF00384 Molybdopterin oxidoreductase DU202_02497 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DU202_02497 PF04324 BFD-like [2Fe-2S] binding domain DU202_02497 PF01568 Molydopterin dinucleotide binding domain DU202_02498 PF04324 BFD-like [2Fe-2S] binding domain DU202_02498 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DU202_02498 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_02498 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DU202_02498 PF18267 Rubredoxin NAD+ reductase C-terminal domain DU202_02499 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_02499 PF13806 Rieske-like [2Fe-2S] domain DU202_02499 PF18267 Rubredoxin NAD+ reductase C-terminal domain DU202_02499 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DU202_02499 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DU202_02499 PF04324 BFD-like [2Fe-2S] binding domain DU202_02501 PF00486 Transcriptional regulatory protein, C terminal DU202_02501 PF00072 Response regulator receiver domain DU202_02502 PF00005 ABC transporter DU202_02503 PF00817 impB/mucB/samB family DU202_02503 PF13438 Domain of unknown function (DUF4113) DU202_02503 PF11799 impB/mucB/samB family C-terminal domain DU202_02504 PF01220 Dehydroquinase class II DU202_02505 PF00364 Biotin-requiring enzyme DU202_02506 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DU202_02506 PF00289 Biotin carboxylase, N-terminal domain DU202_02506 PF02785 Biotin carboxylase C-terminal domain DU202_02508 PF12832 MFS_1 like family DU202_02510 PF00884 Sulfatase DU202_02510 PF08019 Phosphoethanolamine transferase EptA/EptB DU202_02530 PF01551 Peptidase family M23 DU202_02530 PF10145 Phage-related minor tail protein DU202_02530 PF01464 Transglycosylase SLT domain DU202_02533 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DU202_02591 PF01645 Conserved region in glutamate synthase DU202_02594 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DU202_02594 PF01565 FAD binding domain DU202_02595 PF01451 Low molecular weight phosphotyrosine protein phosphatase DU202_02597 PF00465 Iron-containing alcohol dehydrogenase DU202_02598 PF03061 Thioesterase superfamily DU202_02599 PF04185 Phosphoesterase family DU202_02599 PF05506 Domain of unknown function (DUF756) DU202_02601 PF12169 DNA polymerase III subunits gamma and tau domain III DU202_02601 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DU202_02601 PF12170 DNA polymerase III tau subunit V interacting with alpha DU202_02602 PF07690 Major Facilitator Superfamily DU202_02607 PF00108 Thiolase, N-terminal domain DU202_02607 PF02803 Thiolase, C-terminal domain DU202_02609 PF03466 LysR substrate binding domain DU202_02609 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02611 PF01810 LysE type translocator DU202_02612 PF01037 Lrp/AsnC ligand binding domain DU202_02613 PF03594 Benzoate membrane transport protein DU202_02614 PF02308 MgtC family DU202_02615 PF00689 Cation transporting ATPase, C-terminus DU202_02615 PF00690 Cation transporter/ATPase, N-terminus DU202_02620 PF00582 Universal stress protein family DU202_02621 PF12848 ABC transporter DU202_02621 PF00005 ABC transporter DU202_02625 PF07715 TonB-dependent Receptor Plug Domain DU202_02625 PF00593 TonB dependent receptor DU202_02632 PF00924 Mechanosensitive ion channel DU202_02633 PF00593 TonB dependent receptor DU202_02633 PF07715 TonB-dependent Receptor Plug Domain DU202_02634 PF00440 Bacterial regulatory proteins, tetR family DU202_02637 PF01037 Lrp/AsnC ligand binding domain DU202_02638 PF01817 Chorismate mutase type II DU202_02640 PF00106 short chain dehydrogenase DU202_02642 PF11940 Domain of unknown function (DUF3458) Ig-like fold DU202_02642 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DU202_02642 PF01433 Peptidase family M1 domain DU202_02645 PF02110 Hydroxyethylthiazole kinase family DU202_02646 PF06445 GyrI-like small molecule binding domain DU202_02648 PF14493 Helix-turn-helix domain DU202_02648 PF05970 PIF1-like helicase DU202_02649 PF00465 Iron-containing alcohol dehydrogenase DU202_02652 PF00171 Aldehyde dehydrogenase family DU202_02653 PF13520 Amino acid permease DU202_02654 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DU202_02655 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DU202_02656 PF00117 Glutamine amidotransferase class-I DU202_02656 PF02540 NAD synthase DU202_02656 PF00958 GMP synthase C terminal domain DU202_02657 PF00749 tRNA synthetases class I (E and Q), catalytic domain DU202_02657 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DU202_02658 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DU202_02659 PF00149 Calcineurin-like phosphoesterase DU202_02661 PF00881 Nitroreductase family DU202_02663 PF17209 Hfq protein DU202_02665 PF08676 MutL C terminal dimerisation domain DU202_02665 PF01119 DNA mismatch repair protein, C-terminal domain DU202_02666 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DU202_02667 PF01479 S4 domain DU202_02667 PF00849 RNA pseudouridylate synthase DU202_02670 PF01479 S4 domain DU202_02670 PF00849 RNA pseudouridylate synthase DU202_02672 PF04284 Protein of unknown function (DUF441) DU202_02673 PF03466 LysR substrate binding domain DU202_02673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02676 PF07690 Major Facilitator Superfamily DU202_02677 PF00520 Ion transport protein DU202_02677 PF00027 Cyclic nucleotide-binding domain DU202_02679 PF11791 Aconitate B N-terminal domain DU202_02679 PF06434 Aconitate hydratase 2 N-terminus DU202_02679 PF00330 Aconitase family (aconitate hydratase) DU202_02682 PF17243 POTRA domain TamA domain 1 DU202_02682 PF07244 Surface antigen variable number repeat DU202_02682 PF01103 Surface antigen DU202_02683 PF07690 Major Facilitator Superfamily DU202_02684 PF03232 Ubiquinone biosynthesis protein COQ7 DU202_02686 PF00120 Glutamine synthetase, catalytic domain DU202_02687 PF00072 Response regulator receiver domain DU202_02687 PF00486 Transcriptional regulatory protein, C terminal DU202_02688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_02688 PF13493 Domain of unknown function (DUF4118) DU202_02688 PF02702 Osmosensitive K+ channel His kinase sensor domain DU202_02688 PF00512 His Kinase A (phospho-acceptor) domain DU202_02689 PF02669 K+-transporting ATPase, c chain DU202_02691 PF03814 Potassium-transporting ATPase A subunit DU202_02694 PF03109 ABC1 family DU202_02695 PF00899 ThiF family DU202_02696 PF01613 Flavin reductase like domain DU202_02697 PF00501 AMP-binding enzyme DU202_02697 PF13193 AMP-binding enzyme C-terminal domain DU202_02698 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_02698 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_02698 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_02699 PF00106 short chain dehydrogenase DU202_02700 PF12833 Helix-turn-helix domain DU202_02701 PF09084 NMT1/THI5 like DU202_02702 PF00528 Binding-protein-dependent transport system inner membrane component DU202_02703 PF13847 Methyltransferase domain DU202_02703 PF17827 PrmC N-terminal domain DU202_02704 PF00472 RF-1 domain DU202_02704 PF03462 PCRF domain DU202_02706 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02706 PF03466 LysR substrate binding domain DU202_02709 PF00296 Luciferase-like monooxygenase DU202_02711 PF13994 PgaD-like protein DU202_02712 PF00535 Glycosyl transferase family 2 DU202_02713 PF14883 Hypothetical glycosyl hydrolase family 13 DU202_02713 PF01522 Polysaccharide deacetylase DU202_02717 PF03618 Kinase/pyrophosphorylase DU202_02718 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DU202_02718 PF02896 PEP-utilising enzyme, TIM barrel domain DU202_02718 PF00391 PEP-utilising enzyme, mobile domain DU202_02720 PF06481 COX Aromatic Rich Motif DU202_02720 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DU202_02721 PF00115 Cytochrome C and Quinol oxidase polypeptide I DU202_02722 PF00510 Cytochrome c oxidase subunit III DU202_02723 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DU202_02724 PF01040 UbiA prenyltransferase family DU202_02725 PF01250 Ribosomal protein S6 DU202_02726 PF01084 Ribosomal protein S18 DU202_02727 PF01281 Ribosomal protein L9, N-terminal domain DU202_02727 PF03948 Ribosomal protein L9, C-terminal domain DU202_02728 PF03796 DnaB-like helicase C terminal domain DU202_02728 PF00772 DnaB-like helicase N terminal domain DU202_02729 PF00842 Alanine racemase, C-terminal domain DU202_02729 PF01168 Alanine racemase, N-terminal domain DU202_02731 PF01841 Transglutaminase-like superfamily DU202_02731 PF08379 Bacterial transglutaminase-like N-terminal region DU202_02733 PF14403 Circularly permuted ATP-grasp type 2 DU202_02735 PF13932 GidA associated domain DU202_02735 PF01134 Glucose inhibited division protein A DU202_02739 PF02954 Bacterial regulatory protein, Fis family DU202_02740 PF02142 MGS-like domain DU202_02740 PF01808 AICARFT/IMPCHase bienzyme DU202_02741 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DU202_02741 PF02844 Phosphoribosylglycinamide synthetase, N domain DU202_02741 PF02843 Phosphoribosylglycinamide synthetase, C domain DU202_02742 PF03180 NLPA lipoprotein DU202_02743 PF09383 NIL domain DU202_02743 PF00005 ABC transporter DU202_02744 PF00528 Binding-protein-dependent transport system inner membrane component DU202_02745 PF16123 Hydroxyacylglutathione hydrolase C-terminus DU202_02745 PF00753 Metallo-beta-lactamase superfamily DU202_02747 PF00375 Sodium:dicarboxylate symporter family DU202_02750 PF13610 DDE domain DU202_02751 PF01051 Initiator Replication protein DU202_02755 PF13817 IS66 C-terminal element DU202_02755 PF13007 Transposase C of IS166 homeodomain DU202_02755 PF13005 zinc-finger binding domain of transposase IS66 DU202_02755 PF03050 Transposase IS66 family DU202_02757 PF01636 Phosphotransferase enzyme family DU202_02761 PF07091 Ribosomal RNA methyltransferase (FmrO) DU202_02762 PF13737 Transposase DDE domain DU202_02764 PF00809 Pterin binding enzyme DU202_02765 PF00893 Small Multidrug Resistance protein DU202_02766 PF13427 Domain of unknown function (DUF4111) DU202_02766 PF01909 Nucleotidyltransferase domain DU202_02767 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_02769 PF00589 Phage integrase family DU202_02769 PF13495 Phage integrase, N-terminal SAM-like domain DU202_02770 PF13610 DDE domain DU202_02771 PF01636 Phosphotransferase enzyme family DU202_02773 PF13610 DDE domain DU202_02775 PF07995 Glucose / Sorbosone dehydrogenase DU202_02776 PF00892 EamA-like transporter family DU202_02777 PF01177 Asp/Glu/Hydantoin racemase DU202_02779 PF02470 MlaD protein DU202_02780 PF04403 Paraquat-inducible protein A DU202_02782 PF02080 TrkA-C domain DU202_02782 PF06826 Predicted Permease Membrane Region DU202_02783 PF00155 Aminotransferase class I and II DU202_02786 PF00083 Sugar (and other) transporter DU202_02786 PF08946 Osmosensory transporter coiled coil DU202_02796 PF00324 Amino acid permease DU202_02797 PF00171 Aldehyde dehydrogenase family DU202_02798 PF00202 Aminotransferase class-III DU202_02799 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02799 PF03466 LysR substrate binding domain DU202_02804 PF00069 Protein kinase domain DU202_02810 PF00814 Glycoprotease family DU202_02811 PF01165 Ribosomal protein S21 DU202_02812 PF09424 Yqey-like protein DU202_02813 PF01435 Peptidase family M48 DU202_02814 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DU202_02814 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DU202_02817 PF00156 Phosphoribosyl transferase domain DU202_02818 PF02674 Colicin V production protein DU202_02819 PF01180 Dihydroorotate dehydrogenase DU202_02855 PF01695 IstB-like ATP binding protein DU202_02859 PF00717 Peptidase S24-like DU202_02871 PF00589 Phage integrase family DU202_02873 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DU202_02873 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DU202_02874 PF00881 Nitroreductase family DU202_02876 PF00271 Helicase conserved C-terminal domain DU202_02876 PF00270 DEAD/DEAH box helicase DU202_02877 PF00313 'Cold-shock' DNA-binding domain DU202_02879 PF00140 Sigma-70 factor, region 1.2 DU202_02879 PF04542 Sigma-70 region 2 DU202_02879 PF04545 Sigma-70, region 4 DU202_02880 PF04241 Protein of unknown function (DUF423) DU202_02882 PF05690 Thiazole biosynthesis protein ThiG DU202_02884 PF03883 Peroxide stress protein YaaA DU202_02886 PF12706 Beta-lactamase superfamily domain DU202_02887 PF01546 Peptidase family M20/M25/M40 DU202_02887 PF07687 Peptidase dimerisation domain DU202_02889 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DU202_02890 PF01817 Chorismate mutase type II DU202_02890 PF00800 Prephenate dehydratase DU202_02890 PF01842 ACT domain DU202_02891 PF00756 Putative esterase DU202_02892 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_02892 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_02892 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_02893 PF00375 Sodium:dicarboxylate symporter family DU202_02894 PF02885 Glycosyl transferase family, helical bundle domain DU202_02894 PF00591 Glycosyl transferase family, a/b domain DU202_02895 PF07023 Protein of unknown function (DUF1315) DU202_02896 PF01513 ATP-NAD kinase DU202_02897 PF14814 Bifunctional transglycosylase second domain DU202_02897 PF00912 Transglycosylase DU202_02897 PF00905 Penicillin binding protein transpeptidase domain DU202_02899 PF00293 NUDIX domain DU202_02901 PF08521 Two-component sensor kinase N-terminal DU202_02901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_02901 PF00512 His Kinase A (phospho-acceptor) domain DU202_02902 PF00072 Response regulator receiver domain DU202_02902 PF00486 Transcriptional regulatory protein, C terminal DU202_02904 PF00437 Type II/IV secretion system protein DU202_02906 PF01980 tRNA-methyltransferase O DU202_02906 PF18389 TrmO C-terminal domain DU202_02907 PF00970 Oxidoreductase FAD-binding domain DU202_02907 PF00175 Oxidoreductase NAD-binding domain DU202_02908 PF02567 Phenazine biosynthesis-like protein DU202_02909 PF00155 Aminotransferase class I and II DU202_02909 PF00392 Bacterial regulatory proteins, gntR family DU202_02911 PF00037 4Fe-4S binding domain DU202_02912 PF00893 Small Multidrug Resistance protein DU202_02913 PF00005 ABC transporter DU202_02914 PF00528 Binding-protein-dependent transport system inner membrane component DU202_02915 PF00528 Binding-protein-dependent transport system inner membrane component DU202_02916 PF00497 Bacterial extracellular solute-binding proteins, family 3 DU202_02917 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_02917 PF03466 LysR substrate binding domain DU202_02919 PF13533 Biotin-lipoyl like DU202_02920 PF00873 AcrB/AcrD/AcrF family DU202_02921 PF02321 Outer membrane efflux protein DU202_02922 PF00464 Serine hydroxymethyltransferase DU202_02928 PF00005 ABC transporter DU202_02929 PF01061 ABC-2 type transporter DU202_02930 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DU202_02930 PF14489 QueF-like protein DU202_02932 PF01098 Cell cycle protein DU202_02933 PF13406 Transglycosylase SLT domain DU202_02934 PF05036 Sporulation related domain DU202_02934 PF03330 Lytic transglycolase DU202_02938 PF12833 Helix-turn-helix domain DU202_02940 PF00889 Elongation factor TS DU202_02941 PF00318 Ribosomal protein S2 DU202_02942 PF00557 Metallopeptidase family M24 DU202_02944 PF07690 Major Facilitator Superfamily DU202_02947 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_02947 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DU202_02948 PF04055 Radical SAM superfamily DU202_02949 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_02949 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_02949 PF09317 Domain of unknown function (DUF1974) DU202_02952 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DU202_02952 PF05221 S-adenosyl-L-homocysteine hydrolase DU202_02953 PF02219 Methylenetetrahydrofolate reductase DU202_02954 PF04452 RNA methyltransferase DU202_02957 PF00563 EAL domain DU202_02957 PF03707 Bacterial signalling protein N terminal repeat DU202_02957 PF00990 Diguanylate cyclase, GGDEF domain DU202_02958 PF00390 Malic enzyme, N-terminal domain DU202_02958 PF01515 Phosphate acetyl/butaryl transferase DU202_02958 PF03949 Malic enzyme, NAD binding domain DU202_02959 PF01743 Poly A polymerase head domain DU202_02959 PF12627 Probable RNA and SrmB- binding site of polymerase A DU202_02960 PF13180 PDZ domain DU202_02961 PF01784 NIF3 (NGG1p interacting factor 3) DU202_02962 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DU202_02962 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DU202_02969 PF01040 UbiA prenyltransferase family DU202_02970 PF04345 Chorismate lyase DU202_02972 PF00854 POT family DU202_02974 PF00589 Phage integrase family DU202_02974 PF13356 Arm DNA-binding domain DU202_02986 PF01551 Peptidase family M23 DU202_02986 PF08525 Opacity-associated protein A N-terminal motif DU202_02986 PF01476 LysM domain DU202_03022 PF01695 IstB-like ATP binding protein DU202_03045 PF00117 Glutamine amidotransferase class-I DU202_03046 PF11838 ERAP1-like C-terminal domain DU202_03046 PF01433 Peptidase family M1 domain DU202_03049 PF07715 TonB-dependent Receptor Plug Domain DU202_03049 PF00593 TonB dependent receptor DU202_03050 PF00591 Glycosyl transferase family, a/b domain DU202_03050 PF02885 Glycosyl transferase family, helical bundle domain DU202_03051 PF00218 Indole-3-glycerol phosphate synthase DU202_03054 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DU202_03054 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DU202_03055 PF01799 [2Fe-2S] binding domain DU202_03055 PF00111 2Fe-2S iron-sulfur cluster binding domain DU202_03059 PF00144 Beta-lactamase DU202_03063 PF05675 Protein of unknown function (DUF817) DU202_03064 PF01208 Uroporphyrinogen decarboxylase (URO-D) DU202_03066 PF00425 chorismate binding enzyme DU202_03068 PF00975 Thioesterase domain DU202_03069 PF00664 ABC transporter transmembrane region DU202_03069 PF00005 ABC transporter DU202_03070 PF00664 ABC transporter transmembrane region DU202_03070 PF00005 ABC transporter DU202_03072 PF00282 Pyridoxal-dependent decarboxylase conserved domain DU202_03073 PF00550 Phosphopantetheine attachment site DU202_03073 PF00857 Isochorismatase family DU202_03074 PF13193 AMP-binding enzyme C-terminal domain DU202_03074 PF00501 AMP-binding enzyme DU202_03075 PF00550 Phosphopantetheine attachment site DU202_03075 PF00668 Condensation domain DU202_03075 PF00501 AMP-binding enzyme DU202_03076 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DU202_03077 PF07715 TonB-dependent Receptor Plug Domain DU202_03077 PF00593 TonB dependent receptor DU202_03078 PF01497 Periplasmic binding protein DU202_03079 PF00005 ABC transporter DU202_03080 PF01032 FecCD transport family DU202_03081 PF01032 FecCD transport family DU202_03083 PF00550 Phosphopantetheine attachment site DU202_03083 PF00668 Condensation domain DU202_03083 PF13193 AMP-binding enzyme C-terminal domain DU202_03083 PF00975 Thioesterase domain DU202_03083 PF00501 AMP-binding enzyme DU202_03084 PF13193 AMP-binding enzyme C-terminal domain DU202_03084 PF00668 Condensation domain DU202_03084 PF00550 Phosphopantetheine attachment site DU202_03084 PF00501 AMP-binding enzyme DU202_03086 PF08348 YheO-like PAS domain DU202_03086 PF13309 HTH domain DU202_03087 PF00291 Pyridoxal-phosphate dependent enzyme DU202_03088 PF00291 Pyridoxal-phosphate dependent enzyme DU202_03089 PF17954 Quercetinase C-terminal cupin domain DU202_03089 PF02678 Pirin DU202_03092 PF00440 Bacterial regulatory proteins, tetR family DU202_03093 PF02801 Beta-ketoacyl synthase, C-terminal domain DU202_03093 PF08659 KR domain DU202_03093 PF00550 Phosphopantetheine attachment site DU202_03093 PF14765 Polyketide synthase dehydratase DU202_03093 PF08240 Alcohol dehydrogenase GroES-like domain DU202_03093 PF08990 Erythronolide synthase docking DU202_03093 PF00698 Acyl transferase domain DU202_03093 PF00109 Beta-ketoacyl synthase, N-terminal domain DU202_03093 PF16197 Ketoacyl-synthetase C-terminal extension DU202_03093 PF09277 Erythronolide synthase, docking DU202_03094 PF13378 Enolase C-terminal domain-like DU202_03094 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DU202_03095 PF00083 Sugar (and other) transporter DU202_03096 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DU202_03098 PF00892 EamA-like transporter family DU202_03102 PF01266 FAD dependent oxidoreductase DU202_03102 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DU202_03103 PF18113 Rubredoxin binding C-terminal domain DU202_03103 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_03105 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DU202_03105 PF00355 Rieske [2Fe-2S] domain DU202_03106 PF02028 BCCT, betaine/carnitine/choline family transporter DU202_03108 PF02028 BCCT, betaine/carnitine/choline family transporter DU202_03109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03109 PF03466 LysR substrate binding domain DU202_03110 PF00324 Amino acid permease DU202_03111 PF00171 Aldehyde dehydrogenase family DU202_03114 PF13556 PucR C-terminal helix-turn-helix domain DU202_03114 PF17853 GGDEF-like domain DU202_03114 PF06018 CodY GAF-like domain DU202_03121 PF04328 Selenoprotein, putative DU202_03122 PF02554 Carbon starvation protein CstA DU202_03122 PF13722 5TM C-terminal transporter carbon starvation CstA DU202_03123 PF08207 Elongation factor P (EF-P) KOW-like domain DU202_03123 PF01132 Elongation factor P (EF-P) OB domain DU202_03123 PF09285 Elongation factor P, C-terminal DU202_03124 PF04055 Radical SAM superfamily DU202_03127 PF01197 Ribosomal protein L31 DU202_03128 PF13593 SBF-like CPA transporter family (DUF4137) DU202_03129 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DU202_03130 PF07690 Major Facilitator Superfamily DU202_03131 PF13654 AAA domain DU202_03131 PF05362 Lon protease (S16) C-terminal proteolytic domain DU202_03132 PF03466 LysR substrate binding domain DU202_03132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03133 PF01476 LysM domain DU202_03133 PF01551 Peptidase family M23 DU202_03134 PF01975 Survival protein SurE DU202_03137 PF00768 D-alanyl-D-alanine carboxypeptidase DU202_03137 PF07943 Penicillin-binding protein 5, C-terminal domain DU202_03138 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_03139 PF13344 Haloacid dehalogenase-like hydrolase DU202_03139 PF00293 NUDIX domain DU202_03141 PF04356 Protein of unknown function (DUF489) DU202_03142 PF00206 Lyase DU202_03142 PF08328 Adenylosuccinate lyase C-terminal DU202_03145 PF08496 Peptidase family S49 N-terminal DU202_03145 PF01343 Peptidase family S49 DU202_03146 PF00005 ABC transporter DU202_03147 PF00528 Binding-protein-dependent transport system inner membrane component DU202_03148 PF00528 Binding-protein-dependent transport system inner membrane component DU202_03149 PF12849 PBP superfamily domain DU202_03150 PF00324 Amino acid permease DU202_03151 PF00205 Thiamine pyrophosphate enzyme, central domain DU202_03151 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DU202_03151 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DU202_03152 PF01037 Lrp/AsnC ligand binding domain DU202_03153 PF00171 Aldehyde dehydrogenase family DU202_03154 PF00282 Pyridoxal-dependent decarboxylase conserved domain DU202_03155 PF00202 Aminotransferase class-III DU202_03157 PF17754 MftR C-terminal domain DU202_03157 PF00440 Bacterial regulatory proteins, tetR family DU202_03159 PF00487 Fatty acid desaturase DU202_03160 PF00970 Oxidoreductase FAD-binding domain DU202_03160 PF00111 2Fe-2S iron-sulfur cluster binding domain DU202_03160 PF00175 Oxidoreductase NAD-binding domain DU202_03161 PF00440 Bacterial regulatory proteins, tetR family DU202_03163 PF18339 RapA N-terminal Tudor like domain 1 DU202_03163 PF12137 RNA polymerase recycling family C-terminal DU202_03163 PF18337 RapA N-terminal Tudor like domain DU202_03163 PF00271 Helicase conserved C-terminal domain DU202_03163 PF00176 SNF2 family N-terminal domain DU202_03164 PF00849 RNA pseudouridylate synthase DU202_03166 PF00202 Aminotransferase class-III DU202_03167 PF02581 Thiamine monophosphate synthase DU202_03172 PF00675 Insulinase (Peptidase family M16) DU202_03172 PF05193 Peptidase M16 inactive domain DU202_03173 PF02567 Phenazine biosynthesis-like protein DU202_03175 PF03466 LysR substrate binding domain DU202_03175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03176 PF06779 Uncharacterised MFS-type transporter YbfB DU202_03179 PF00180 Isocitrate/isopropylmalate dehydrogenase DU202_03180 PF00849 RNA pseudouridylate synthase DU202_03181 PF03971 Monomeric isocitrate dehydrogenase DU202_03183 PF07943 Penicillin-binding protein 5, C-terminal domain DU202_03183 PF00768 D-alanyl-D-alanine carboxypeptidase DU202_03184 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_03185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DU202_03186 PF03441 FAD binding domain of DNA photolyase DU202_03186 PF00875 DNA photolyase DU202_03192 PF02350 UDP-N-acetylglucosamine 2-epimerase DU202_03195 PF03060 Nitronate monooxygenase DU202_03196 PF01207 Dihydrouridine synthase (Dus) DU202_03197 PF07759 Protein of unknown function (DUF1615) DU202_03199 PF00696 Amino acid kinase family DU202_03199 PF01472 PUA domain DU202_03200 PF01018 GTP1/OBG DU202_03200 PF01926 50S ribosome-binding GTPase DU202_03203 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DU202_03203 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DU202_03204 PF00892 EamA-like transporter family DU202_03206 PF17757 UvrB interaction domain DU202_03206 PF12344 Ultra-violet resistance protein B DU202_03206 PF02151 UvrB/uvrC motif DU202_03206 PF04851 Type III restriction enzyme, res subunit DU202_03206 PF00271 Helicase conserved C-terminal domain DU202_03208 PF17151 Periplasmic sensor domain DU202_03208 PF00990 Diguanylate cyclase, GGDEF domain DU202_03215 PF00106 short chain dehydrogenase DU202_03216 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DU202_03217 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DU202_03218 PF02565 Recombination protein O C terminal DU202_03218 PF11967 Recombination protein O N terminal DU202_03220 PF07650 KH domain DU202_03220 PF01926 50S ribosome-binding GTPase DU202_03221 PF00035 Double-stranded RNA binding motif DU202_03221 PF14622 Ribonuclease-III-like DU202_03223 PF10502 Signal peptidase, peptidase S26 DU202_03224 PF06421 GTP-binding protein LepA C-terminus DU202_03224 PF03144 Elongation factor Tu domain 2 DU202_03224 PF00009 Elongation factor Tu GTP binding domain DU202_03224 PF00679 Elongation factor G C-terminus DU202_03226 PF13180 PDZ domain DU202_03227 PF02910 Fumarate reductase flavoprotein C-term DU202_03227 PF00890 FAD binding domain DU202_03229 PF02223 Thymidylate kinase DU202_03230 PF02618 YceG-like family DU202_03231 PF01063 Amino-transferase class IV DU202_03234 PF00528 Binding-protein-dependent transport system inner membrane component DU202_03235 PF00528 Binding-protein-dependent transport system inner membrane component DU202_03236 PF00005 ABC transporter DU202_03236 PF12857 TOBE-like domain DU202_03237 PF03466 LysR substrate binding domain DU202_03237 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03239 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_03239 PF14602 Hexapeptide repeat of succinyl-transferase DU202_03239 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DU202_03241 PF06508 Queuosine biosynthesis protein QueC DU202_03244 PF00578 AhpC/TSA family DU202_03246 PF00293 NUDIX domain DU202_03246 PF01467 Cytidylyltransferase-like DU202_03247 PF00378 Enoyl-CoA hydratase/isomerase DU202_03248 PF01784 NIF3 (NGG1p interacting factor 3) DU202_03250 PF07690 Major Facilitator Superfamily DU202_03251 PF02769 AIR synthase related protein, C-terminal domain DU202_03251 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DU202_03251 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DU202_03252 PF01966 HD domain DU202_03253 PF07499 RuvA, C-terminal domain DU202_03253 PF01330 RuvA N terminal domain DU202_03254 PF05491 RuvB C-terminal winged helix domain DU202_03254 PF17864 RuvB AAA lid domain DU202_03254 PF05496 Holliday junction DNA helicase RuvB P-loop domain DU202_03255 PF07687 Peptidase dimerisation domain DU202_03255 PF01546 Peptidase family M20/M25/M40 DU202_03256 PF03061 Thioesterase superfamily DU202_03257 PF01618 MotA/TolQ/ExbB proton channel family DU202_03258 PF02472 Biopolymer transport protein ExbD/TolR DU202_03260 PF07676 WD40-like Beta Propeller Repeat DU202_03260 PF04052 TolB amino-terminal domain DU202_03261 PF00691 OmpA family DU202_03263 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DU202_03264 PF00588 SpoU rRNA Methylase family DU202_03264 PF08032 RNA 2'-O ribose methyltransferase substrate binding DU202_03270 PF11638 DnaA N-terminal domain DU202_03270 PF00308 Bacterial dnaA protein DU202_03270 PF08299 Bacterial dnaA protein helix-turn-helix DU202_03271 PF01594 AI-2E family transporter DU202_03272 PF02769 AIR synthase related protein, C-terminal domain DU202_03272 PF00586 AIR synthase related protein, N-terminal domain DU202_03273 PF00551 Formyl transferase DU202_03274 PF12697 Alpha/beta hydrolase family DU202_03275 PF06965 Na+/H+ antiporter 1 DU202_03275 PF01343 Peptidase family S49 DU202_03277 PF00753 Metallo-beta-lactamase superfamily DU202_03277 PF03772 Competence protein DU202_03277 PF13567 Domain of unknown function (DUF4131) DU202_03278 PF00005 ABC transporter DU202_03279 PF02687 FtsX-like permease family DU202_03279 PF12704 MacB-like periplasmic core domain DU202_03281 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DU202_03284 PF00266 Aminotransferase class-V DU202_03286 PF13533 Biotin-lipoyl like DU202_03290 PF00535 Glycosyl transferase family 2 DU202_03293 PF03989 DNA gyrase C-terminal domain, beta-propeller DU202_03293 PF00521 DNA gyrase/topoisomerase IV, subunit A DU202_03294 PF00766 Electron transfer flavoprotein FAD-binding domain DU202_03294 PF01012 Electron transfer flavoprotein domain DU202_03295 PF01012 Electron transfer flavoprotein domain DU202_03296 PF02899 Phage integrase, N-terminal SAM-like domain DU202_03296 PF00589 Phage integrase family DU202_03297 PF01810 LysE type translocator DU202_03298 PF01678 Diaminopimelate epimerase DU202_03299 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DU202_03299 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DU202_03301 PF00324 Amino acid permease DU202_03302 PF18073 Rubredoxin metal binding domain DU202_03304 PF00152 tRNA synthetases class II (D, K and N) DU202_03305 PF11890 Domain of unknown function (DUF3410) DU202_03305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DU202_03305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DU202_03306 PF06803 Protein of unknown function (DUF1232) DU202_03307 PF02634 FdhD/NarQ family DU202_03308 PF00384 Molybdopterin oxidoreductase DU202_03309 PF02595 Glycerate kinase family DU202_03312 PF00881 Nitroreductase family DU202_03318 PF01272 Transcription elongation factor, GreA/GreB, C-term DU202_03318 PF03449 Transcription elongation factor, N-terminal DU202_03319 PF01464 Transglycosylase SLT domain DU202_03319 PF00497 Bacterial extracellular solute-binding proteins, family 3 DU202_03321 PF01171 PP-loop family DU202_03322 PF01464 Transglycosylase SLT domain DU202_03323 PF01435 Peptidase family M48 DU202_03325 PF00873 AcrB/AcrD/AcrF family DU202_03326 PF03009 Glycerophosphoryl diester phosphodiesterase family DU202_03327 PF00753 Metallo-beta-lactamase superfamily DU202_03328 PF01219 Prokaryotic diacylglycerol kinase DU202_03329 PF00118 TCP-1/cpn60 chaperonin family DU202_03330 PF00166 Chaperonin 10 Kd subunit DU202_03335 PF00149 Calcineurin-like phosphoesterase DU202_03338 PF00781 Diacylglycerol kinase catalytic domain DU202_03339 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DU202_03339 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DU202_03340 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DU202_03340 PF01266 FAD dependent oxidoreductase DU202_03341 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DU202_03341 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DU202_03342 PF00083 Sugar (and other) transporter DU202_03345 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DU202_03345 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DU202_03348 PF09423 PhoD-like phosphatase DU202_03348 PF16655 PhoD-like phosphatase, N-terminal domain DU202_03352 PF00809 Pterin binding enzyme DU202_03353 PF00004 ATPase family associated with various cellular activities (AAA) DU202_03353 PF01434 Peptidase family M41 DU202_03353 PF17862 AAA+ lid domain DU202_03353 PF06480 FtsH Extracellular DU202_03354 PF01728 FtsJ-like methyltransferase DU202_03355 PF01985 CRS1 / YhbY (CRM) domain DU202_03358 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DU202_03358 PF00117 Glutamine amidotransferase class-I DU202_03359 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DU202_03359 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DU202_03359 PF02142 MGS-like domain DU202_03360 PF01272 Transcription elongation factor, GreA/GreB, C-term DU202_03360 PF03449 Transcription elongation factor, N-terminal DU202_03361 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_03362 PF00582 Universal stress protein family DU202_03363 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DU202_03365 PF09587 Bacterial capsule synthesis protein PGA_cap DU202_03370 PF00999 Sodium/hydrogen exchanger family DU202_03371 PF04228 Putative neutral zinc metallopeptidase DU202_03372 PF05661 Protein of unknown function (DUF808) DU202_03373 PF00579 tRNA synthetases class I (W and Y) DU202_03374 PF00549 CoA-ligase DU202_03374 PF02629 CoA binding domain DU202_03375 PF08442 ATP-grasp domain DU202_03375 PF00549 CoA-ligase DU202_03376 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_03376 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DU202_03377 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DU202_03377 PF02817 e3 binding domain DU202_03377 PF00364 Biotin-requiring enzyme DU202_03378 PF16870 2-oxoglutarate dehydrogenase C-terminal DU202_03378 PF02779 Transketolase, pyrimidine binding domain DU202_03378 PF00676 Dehydrogenase E1 component DU202_03378 PF16078 2-oxoglutarate dehydrogenase N-terminus DU202_03379 PF13085 2Fe-2S iron-sulfur cluster binding domain DU202_03380 PF00890 FAD binding domain DU202_03380 PF02910 Fumarate reductase flavoprotein C-term DU202_03381 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DU202_03382 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DU202_03383 PF00285 Citrate synthase, C-terminal domain DU202_03389 PF03979 Sigma-70 factor, region 1.1 DU202_03389 PF00140 Sigma-70 factor, region 1.2 DU202_03389 PF04542 Sigma-70 region 2 DU202_03389 PF04546 Sigma-70, non-essential region DU202_03389 PF04539 Sigma-70 region 3 DU202_03389 PF04545 Sigma-70, region 4 DU202_03390 PF04359 Protein of unknown function (DUF493) DU202_03391 PF03099 Biotin/lipoate A/B protein ligase family DU202_03393 PF00465 Iron-containing alcohol dehydrogenase DU202_03394 PF13520 Amino acid permease DU202_03395 PF03358 NADPH-dependent FMN reductase DU202_03396 PF01638 HxlR-like helix-turn-helix DU202_03397 PF00588 SpoU rRNA Methylase family DU202_03398 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DU202_03398 PF14824 Sirohaem biosynthesis protein central DU202_03398 PF10414 Sirohaem synthase dimerisation region DU202_03399 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DU202_03399 PF02403 Seryl-tRNA synthetase N-terminal domain DU202_03401 PF03548 Outer membrane lipoprotein carrier protein LolA DU202_03402 PF01016 Ribosomal L27 protein DU202_03403 PF00829 Ribosomal prokaryotic L21 protein DU202_03404 PF00348 Polyprenyl synthetase DU202_03411 PF00529 HlyD membrane-fusion protein of T1SS DU202_03411 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DU202_03412 PF00873 AcrB/AcrD/AcrF family DU202_03413 PF02321 Outer membrane efflux protein DU202_03414 PF01906 Putative heavy-metal-binding DU202_03415 PF01906 Putative heavy-metal-binding DU202_03419 PF08264 Anticodon-binding domain of tRNA DU202_03419 PF00133 tRNA synthetases class I (I, L, M and V) DU202_03419 PF10458 Valyl tRNA synthetase tRNA binding arm DU202_03423 PF03466 LysR substrate binding domain DU202_03423 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03424 PF00909 Ammonium Transporter Family DU202_03426 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_03426 PF00512 His Kinase A (phospho-acceptor) domain DU202_03426 PF08521 Two-component sensor kinase N-terminal DU202_03427 PF00486 Transcriptional regulatory protein, C terminal DU202_03427 PF00072 Response regulator receiver domain DU202_03428 PF08019 Phosphoethanolamine transferase EptA/EptB DU202_03428 PF00884 Sulfatase DU202_03432 PF01734 Patatin-like phospholipase DU202_03434 PF01145 SPFH domain / Band 7 family DU202_03435 PF04237 YjbR DU202_03436 PF00348 Polyprenyl synthetase DU202_03437 PF04303 PrpF protein DU202_03438 PF00324 Amino acid permease DU202_03440 PF01965 DJ-1/PfpI family DU202_03441 PF08990 Erythronolide synthase docking DU202_03441 PF00550 Phosphopantetheine attachment site DU202_03441 PF16197 Ketoacyl-synthetase C-terminal extension DU202_03441 PF14765 Polyketide synthase dehydratase DU202_03441 PF09277 Erythronolide synthase, docking DU202_03441 PF08659 KR domain DU202_03441 PF00109 Beta-ketoacyl synthase, N-terminal domain DU202_03441 PF02801 Beta-ketoacyl synthase, C-terminal domain DU202_03441 PF08240 Alcohol dehydrogenase GroES-like domain DU202_03441 PF00698 Acyl transferase domain DU202_03442 PF12833 Helix-turn-helix domain DU202_03442 PF06719 AraC-type transcriptional regulator N-terminus DU202_03445 PF02673 Bacitracin resistance protein BacA DU202_03451 PF02525 Flavodoxin-like fold DU202_03454 PF01507 Phosphoadenosine phosphosulfate reductase family DU202_03455 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DU202_03455 PF06974 Protein of unknown function (DUF1298) DU202_03457 PF10150 Ribonuclease E/G family DU202_03457 PF00575 S1 RNA binding domain DU202_03458 PF02545 Maf-like protein DU202_03459 PF04093 rod shape-determining protein MreD DU202_03460 PF04085 rod shape-determining protein MreC DU202_03462 PF02686 Glu-tRNAGln amidotransferase C subunit DU202_03463 PF01425 Amidase DU202_03464 PF02934 GatB/GatE catalytic domain DU202_03464 PF02637 GatB domain DU202_03472 PF05992 SbmA/BacA-like family DU202_03473 PF13291 ACT domain DU202_03473 PF00291 Pyridoxal-phosphate dependent enzyme DU202_03474 PF01734 Patatin-like phospholipase DU202_03475 PF01235 Sodium:alanine symporter family DU202_03477 PF00881 Nitroreductase family DU202_03478 PF07690 Major Facilitator Superfamily DU202_03479 PF12805 FUSC-like inner membrane protein yccS DU202_03481 PF00175 Oxidoreductase NAD-binding domain DU202_03481 PF00258 Flavodoxin DU202_03481 PF00667 FAD binding domain DU202_03489 PF17969 L,D-transpeptidase C-terminal domain DU202_03489 PF03734 L,D-transpeptidase catalytic domain DU202_03490 PF04304 Protein of unknown function (DUF454) DU202_03492 PF08085 Entericidin EcnA/B family DU202_03493 PF01546 Peptidase family M20/M25/M40 DU202_03493 PF07687 Peptidase dimerisation domain DU202_03495 PF00072 Response regulator receiver domain DU202_03495 PF01627 Hpt domain DU202_03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_03495 PF01584 CheW-like domain DU202_03496 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DU202_03496 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DU202_03497 PF01584 CheW-like domain DU202_03498 PF00072 Response regulator receiver domain DU202_03499 PF00072 Response regulator receiver domain DU202_03502 PF00873 AcrB/AcrD/AcrF family DU202_03503 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DU202_03503 PF03129 Anticodon binding domain DU202_03503 PF04073 Aminoacyl-tRNA editing domain DU202_03504 PF07411 Domain of unknown function (DUF1508) DU202_03505 PF08274 PhnA Zinc-Ribbon DU202_03505 PF03831 PhnA domain DU202_03506 PF04343 Protein of unknown function, DUF488 DU202_03508 PF01571 Aminomethyltransferase folate-binding domain DU202_03509 PF10411 Disulfide bond isomerase protein N-terminus DU202_03509 PF13098 Thioredoxin-like domain DU202_03511 PF03547 Membrane transport protein DU202_03512 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DU202_03513 PF07715 TonB-dependent Receptor Plug Domain DU202_03513 PF00593 TonB dependent receptor DU202_03514 PF02245 Methylpurine-DNA glycosylase (MPG) DU202_03515 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DU202_03515 PF06827 Zinc finger found in FPG and IleRS DU202_03515 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DU202_03518 PF01741 Large-conductance mechanosensitive channel, MscL DU202_03520 PF00860 Permease family DU202_03521 PF05175 Methyltransferase small domain DU202_03521 PF08468 Methyltransferase small domain N-terminal DU202_03522 PF00324 Amino acid permease DU202_03523 PF01139 tRNA-splicing ligase RtcB DU202_03525 PF00691 OmpA family DU202_03525 PF13505 Outer membrane protein beta-barrel domain DU202_03527 PF00108 Thiolase, N-terminal domain DU202_03527 PF02803 Thiolase, C-terminal domain DU202_03530 PF00893 Small Multidrug Resistance protein DU202_03532 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DU202_03532 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DU202_03533 PF01011 PQQ enzyme repeat DU202_03534 PF04966 Carbohydrate-selective porin, OprB family DU202_03535 PF02515 CoA-transferase family III DU202_03536 PF02311 AraC-like ligand binding domain DU202_03536 PF12833 Helix-turn-helix domain DU202_03537 PF00108 Thiolase, N-terminal domain DU202_03537 PF02803 Thiolase, C-terminal domain DU202_03538 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DU202_03538 PF00378 Enoyl-CoA hydratase/isomerase DU202_03538 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DU202_03544 PF03006 Haemolysin-III related DU202_03545 PF07690 Major Facilitator Superfamily DU202_03545 PF00083 Sugar (and other) transporter DU202_03547 PF02810 SEC-C motif DU202_03547 PF07517 SecA DEAD-like domain DU202_03547 PF01043 SecA preprotein cross-linking domain DU202_03547 PF07516 SecA Wing and Scaffold domain DU202_03548 PF00578 AhpC/TSA family DU202_03548 PF10417 C-terminal domain of 1-Cys peroxiredoxin DU202_03549 PF00753 Metallo-beta-lactamase superfamily DU202_03552 PF02875 Mur ligase family, glutamate ligase domain DU202_03552 PF08245 Mur ligase middle domain DU202_03553 PF01039 Carboxyl transferase domain DU202_03554 PF00290 Tryptophan synthase alpha chain DU202_03559 PF00291 Pyridoxal-phosphate dependent enzyme DU202_03560 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DU202_03561 PF00593 TonB dependent receptor DU202_03561 PF07715 TonB-dependent Receptor Plug Domain DU202_03562 PF01923 Cobalamin adenosyltransferase DU202_03566 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DU202_03567 PF00486 Transcriptional regulatory protein, C terminal DU202_03567 PF00072 Response regulator receiver domain DU202_03568 PF00512 His Kinase A (phospho-acceptor) domain DU202_03568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_03568 PF00672 HAMP domain DU202_03570 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_03570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_03570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_03570 PF12806 Acetyl-CoA dehydrogenase C-terminal like DU202_03571 PF12806 Acetyl-CoA dehydrogenase C-terminal like DU202_03571 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_03571 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_03571 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_03572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03572 PF03466 LysR substrate binding domain DU202_03573 PF00043 Glutathione S-transferase, C-terminal domain DU202_03573 PF02798 Glutathione S-transferase, N-terminal domain DU202_03574 PF06146 Phosphate-starvation-inducible E DU202_03578 PF07715 TonB-dependent Receptor Plug Domain DU202_03578 PF00593 TonB dependent receptor DU202_03581 PF00152 tRNA synthetases class II (D, K and N) DU202_03581 PF02938 GAD domain DU202_03581 PF01336 OB-fold nucleic acid binding domain DU202_03582 PF17102 Stealth protein CR3, conserved region 3 DU202_03582 PF17101 Stealth protein CR1, conserved region 1 DU202_03582 PF11380 Stealth protein CR2, conserved region 2 DU202_03587 PF13439 Glycosyltransferase Family 4 DU202_03587 PF00534 Glycosyl transferases group 1 DU202_03588 PF00535 Glycosyl transferase family 2 DU202_03593 PF01063 Amino-transferase class IV DU202_03594 PF08335 GlnD PII-uridylyltransferase DU202_03594 PF03710 Glutamate-ammonia ligase adenylyltransferase DU202_03595 PF00512 His Kinase A (phospho-acceptor) domain DU202_03595 PF07689 KaiB domain DU202_03595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_03603 PF02547 Queuosine biosynthesis protein DU202_03606 PF01702 Queuine tRNA-ribosyltransferase DU202_03607 PF02699 Preprotein translocase subunit DU202_03608 PF02355 Protein export membrane protein DU202_03608 PF13721 SecD export protein N-terminal TM region DU202_03608 PF07549 SecD/SecF GG Motif DU202_03609 PF02355 Protein export membrane protein DU202_03609 PF07549 SecD/SecF GG Motif DU202_03610 PF04127 DNA / pantothenate metabolism flavoprotein DU202_03610 PF02441 Flavoprotein DU202_03611 PF04002 RadC-like JAB domain DU202_03612 PF01062 Bestrophin, RFP-TM, chloride channel DU202_03613 PF02811 PHP domain DU202_03614 PF04279 Intracellular septation protein A DU202_03615 PF03795 YCII-related domain DU202_03617 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DU202_03617 PF01266 FAD dependent oxidoreductase DU202_03619 PF04461 Protein of unknown function (DUF520) DU202_03621 PF03061 Thioesterase superfamily DU202_03622 PF00085 Thioredoxin DU202_03623 PF00561 alpha/beta hydrolase fold DU202_03624 PF00753 Metallo-beta-lactamase superfamily DU202_03624 PF04273 Putative phosphatase (DUF442) DU202_03626 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_03626 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DU202_03633 PF17152 Periplasmic sensor domain DU202_03633 PF00990 Diguanylate cyclase, GGDEF domain DU202_03634 PF01389 OmpA-like transmembrane domain DU202_03634 PF00691 OmpA family DU202_03635 PF00149 Calcineurin-like phosphoesterase DU202_03635 PF10518 TAT (twin-arginine translocation) pathway signal sequence DU202_03636 PF13091 PLD-like domain DU202_03638 PF01926 50S ribosome-binding GTPase DU202_03638 PF13167 GTP-binding GTPase N-terminal DU202_03638 PF16360 GTP-binding GTPase Middle Region DU202_03642 PF00149 Calcineurin-like phosphoesterase DU202_03643 PF00398 Ribosomal RNA adenine dimethylase DU202_03644 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DU202_03645 PF00572 Ribosomal protein L13 DU202_03646 PF00380 Ribosomal protein S9/S16 DU202_03647 PF00043 Glutathione S-transferase, C-terminal domain DU202_03647 PF13417 Glutathione S-transferase, N-terminal domain DU202_03648 PF04386 Stringent starvation protein B DU202_03650 PF00289 Biotin carboxylase, N-terminal domain DU202_03650 PF02785 Biotin carboxylase C-terminal domain DU202_03650 PF00364 Biotin-requiring enzyme DU202_03650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DU202_03652 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_03652 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_03652 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_03653 PF01039 Carboxyl transferase domain DU202_03656 PF00440 Bacterial regulatory proteins, tetR family DU202_03656 PF17932 Tetracyclin repressor-like, C-terminal domain DU202_03657 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_03657 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_03657 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_03666 PF01066 CDP-alcohol phosphatidyltransferase DU202_03667 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DU202_03671 PF00056 lactate/malate dehydrogenase, NAD binding domain DU202_03671 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DU202_03673 PF01551 Peptidase family M23 DU202_03673 PF01464 Transglycosylase SLT domain DU202_03673 PF10145 Phage-related minor tail protein DU202_03674 PF01938 TRAM domain DU202_03674 PF00919 Uncharacterized protein family UPF0004 DU202_03674 PF04055 Radical SAM superfamily DU202_03675 PF02562 PhoH-like protein DU202_03676 PF02130 Uncharacterized protein family UPF0054 DU202_03681 PF03358 NADPH-dependent FMN reductase DU202_03682 PF03631 Virulence factor BrkB DU202_03683 PF00892 EamA-like transporter family DU202_03684 PF12833 Helix-turn-helix domain DU202_03685 PF01557 Fumarylacetoacetate (FAA) hydrolase family DU202_03694 PF08461 Ribonuclease R winged-helix domain DU202_03694 PF00773 RNB domain DU202_03694 PF08206 Ribonuclease B OB domain DU202_03694 PF00575 S1 RNA binding domain DU202_03694 PF17876 Cold shock domain DU202_03695 PF01432 Peptidase family M3 DU202_03696 PF09526 Probable metal-binding protein (DUF2387) DU202_03703 PF03937 Flavinator of succinate dehydrogenase DU202_03704 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_03704 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_03704 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_03705 PF00743 Flavin-binding monooxygenase-like DU202_03706 PF01196 Ribosomal protein L17 DU202_03707 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DU202_03707 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DU202_03707 PF01000 RNA polymerase Rpb3/RpoA insert domain DU202_03708 PF00163 Ribosomal protein S4/S9 N-terminal domain DU202_03708 PF01479 S4 domain DU202_03709 PF00411 Ribosomal protein S11 DU202_03710 PF00416 Ribosomal protein S13/S18 DU202_03711 PF00444 Ribosomal protein L36 DU202_03712 PF00344 SecY translocase DU202_03713 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DU202_03714 PF00327 Ribosomal protein L30p/L7e DU202_03715 PF00333 Ribosomal protein S5, N-terminal domain DU202_03715 PF03719 Ribosomal protein S5, C-terminal domain DU202_03716 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DU202_03717 PF00347 Ribosomal protein L6 DU202_03718 PF00410 Ribosomal protein S8 DU202_03719 PF00253 Ribosomal protein S14p/S29e DU202_03720 PF00281 Ribosomal protein L5 DU202_03720 PF00673 ribosomal L5P family C-terminus DU202_03721 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DU202_03721 PF00467 KOW motif DU202_03722 PF00238 Ribosomal protein L14p/L23e DU202_03723 PF00366 Ribosomal protein S17 DU202_03724 PF00831 Ribosomal L29 protein DU202_03725 PF00252 Ribosomal protein L16p/L10e DU202_03726 PF07650 KH domain DU202_03726 PF00189 Ribosomal protein S3, C-terminal domain DU202_03727 PF00237 Ribosomal protein L22p/L17e DU202_03728 PF00203 Ribosomal protein S19 DU202_03729 PF00181 Ribosomal Proteins L2, RNA binding domain DU202_03729 PF03947 Ribosomal Proteins L2, C-terminal domain DU202_03730 PF00276 Ribosomal protein L23 DU202_03731 PF00573 Ribosomal protein L4/L1 family DU202_03732 PF00297 Ribosomal protein L3 DU202_03733 PF00338 Ribosomal protein S10p/S20e DU202_03734 PF00117 Glutamine amidotransferase class-I DU202_03735 PF01053 Cys/Met metabolism PLP-dependent enzyme DU202_03736 PF05872 Bacterial protein of unknown function (DUF853) DU202_03737 PF00175 Oxidoreductase NAD-binding domain DU202_03737 PF00042 Globin DU202_03737 PF00970 Oxidoreductase FAD-binding domain DU202_03738 PF02082 Transcriptional regulator DU202_03739 PF01926 50S ribosome-binding GTPase DU202_03741 PF00375 Sodium:dicarboxylate symporter family DU202_03743 PF01553 Acyltransferase DU202_03746 PF17191 RecG wedge domain DU202_03746 PF00271 Helicase conserved C-terminal domain DU202_03746 PF00270 DEAD/DEAH box helicase DU202_03747 PF00156 Phosphoribosyl transferase domain DU202_03748 PF00293 NUDIX domain DU202_03749 PF03641 Possible lysine decarboxylase DU202_03750 PF01544 CorA-like Mg2+ transporter protein DU202_03752 PF05494 MlaC protein DU202_03754 PF02405 Permease MlaE DU202_03755 PF00005 ABC transporter DU202_03757 PF03880 DbpA RNA binding domain DU202_03757 PF00270 DEAD/DEAH box helicase DU202_03757 PF12343 Cold shock protein DEAD box A DU202_03757 PF00271 Helicase conserved C-terminal domain DU202_03758 PF00459 Inositol monophosphatase family DU202_03759 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DU202_03759 PF02780 Transketolase, C-terminal domain DU202_03759 PF02779 Transketolase, pyrimidine binding domain DU202_03760 PF00925 GTP cyclohydrolase II DU202_03761 PF01218 Coproporphyrinogen III oxidase DU202_03762 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DU202_03762 PF01488 Shikimate / quinate 5-dehydrogenase DU202_03762 PF08501 Shikimate dehydrogenase substrate binding domain DU202_03764 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DU202_03764 PF02770 Acyl-CoA dehydrogenase, middle domain DU202_03764 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DU202_03764 PF12806 Acetyl-CoA dehydrogenase C-terminal like DU202_03766 PF04024 PspC domain DU202_03767 PF00571 CBS domain DU202_03772 PF02091 Glycyl-tRNA synthetase alpha subunit DU202_03773 PF05746 DALR anticodon binding domain DU202_03773 PF02092 Glycyl-tRNA synthetase beta subunit DU202_03775 PF00892 EamA-like transporter family DU202_03776 PF03466 LysR substrate binding domain DU202_03776 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03782 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DU202_03783 PF04996 Succinylarginine dihydrolase DU202_03784 PF00171 Aldehyde dehydrogenase family DU202_03785 PF04958 Arginine N-succinyltransferase beta subunit DU202_03786 PF00202 Aminotransferase class-III DU202_03787 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DU202_03787 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DU202_03788 PF00324 Amino acid permease DU202_03795 PF01594 AI-2E family transporter DU202_03796 PF00080 Copper/zinc superoxide dismutase (SODC) DU202_03797 PF12805 FUSC-like inner membrane protein yccS DU202_03798 PF07690 Major Facilitator Superfamily DU202_03800 PF02525 Flavodoxin-like fold DU202_03801 PF03992 Antibiotic biosynthesis monooxygenase DU202_03803 PF02913 FAD linked oxidases, C-terminal domain DU202_03803 PF01565 FAD binding domain DU202_03804 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DU202_03804 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DU202_03805 PF00892 EamA-like transporter family DU202_03806 PF00892 EamA-like transporter family DU202_03808 PF01925 Sulfite exporter TauE/SafE DU202_03809 PF09157 Pseudouridine synthase II TruB, C-terminal DU202_03809 PF16198 tRNA pseudouridylate synthase B C-terminal domain DU202_03809 PF01509 TruB family pseudouridylate synthase (N terminal domain) DU202_03810 PF03280 Proteobacterial lipase chaperone protein DU202_03811 PF00561 alpha/beta hydrolase fold DU202_03812 PF01245 Ribosomal protein L19 DU202_03813 PF01746 tRNA (Guanine-1)-methyltransferase DU202_03814 PF05239 PRC-barrel domain DU202_03814 PF01782 RimM N-terminal domain DU202_03815 PF00886 Ribosomal protein S16 DU202_03824 PF02401 LytB protein DU202_03825 PF00625 Guanylate kinase DU202_03826 PF01192 RNA polymerase Rpb6 DU202_03827 PF13291 ACT domain DU202_03827 PF04607 Region found in RelA / SpoT proteins DU202_03827 PF02824 TGS domain DU202_03828 PF01042 Endoribonuclease L-PSP DU202_03829 PF04324 BFD-like [2Fe-2S] binding domain DU202_03830 PF00210 Ferritin-like domain DU202_03831 PF15864 Protein glycosylation ligase DU202_03831 PF11846 Virulence factor membrane-bound polymerase, C-terminal DU202_03831 PF04932 O-Antigen ligase DU202_03833 PF07963 Prokaryotic N-terminal methylation motif DU202_03833 PF00114 Pilin (bacterial filament) DU202_03835 PF04536 TPM domain DU202_03836 PF04011 LemA family DU202_03838 PF07992 Pyridine nucleotide-disulphide oxidoreductase DU202_03838 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DU202_03839 PF01493 GXGXG motif DU202_03839 PF01645 Conserved region in glutamate synthase DU202_03839 PF04898 Glutamate synthase central domain DU202_03839 PF00310 Glutamine amidotransferases class-II DU202_03841 PF01761 3-dehydroquinate synthase DU202_03842 PF01202 Shikimate kinase DU202_03843 PF07660 Secretin and TonB N terminus short domain DU202_03843 PF11741 AMIN domain DU202_03843 PF00263 Bacterial type II and III secretion system protein DU202_03843 PF03958 Bacterial type II/III secretion system short domain DU202_03848 PF00912 Transglycosylase DU202_03848 PF17092 Penicillin-binding protein OB-like domain DU202_03848 PF00905 Penicillin binding protein transpeptidase domain DU202_03849 PF13847 Methyltransferase domain DU202_03851 PF00953 Glycosyl transferase family 4 DU202_03852 PF02875 Mur ligase family, glutamate ligase domain DU202_03852 PF01225 Mur ligase family, catalytic domain DU202_03852 PF08245 Mur ligase middle domain DU202_03853 PF08245 Mur ligase middle domain DU202_03853 PF02875 Mur ligase family, glutamate ligase domain DU202_03853 PF01225 Mur ligase family, catalytic domain DU202_03854 PF03717 Penicillin-binding Protein dimerisation domain DU202_03854 PF00905 Penicillin binding protein transpeptidase domain DU202_03856 PF01795 MraW methylase family DU202_03859 PF00749 tRNA synthetases class I (E and Q), catalytic domain DU202_03862 PF00324 Amino acid permease DU202_03868 PF01545 Cation efflux family DU202_03869 PF00873 AcrB/AcrD/AcrF family DU202_03870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DU202_03870 PF00529 HlyD membrane-fusion protein of T1SS DU202_03875 PF00005 ABC transporter DU202_03875 PF12848 ABC transporter DU202_03876 PF01053 Cys/Met metabolism PLP-dependent enzyme DU202_03877 PF00106 short chain dehydrogenase DU202_03878 PF01740 STAS domain DU202_03878 PF00916 Sulfate permease family DU202_03879 PF09371 Tex-like protein N-terminal domain DU202_03879 PF17674 HHH domain DU202_03879 PF00575 S1 RNA binding domain DU202_03879 PF16921 Tex protein YqgF-like domain DU202_03880 PF00072 Response regulator receiver domain DU202_03880 PF00486 Transcriptional regulatory protein, C terminal DU202_03881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_03881 PF00512 His Kinase A (phospho-acceptor) domain DU202_03881 PF00672 HAMP domain DU202_03882 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DU202_03882 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DU202_03883 PF00583 Acetyltransferase (GNAT) family DU202_03887 PF00475 Imidazoleglycerol-phosphate dehydratase DU202_03888 PF00117 Glutamine amidotransferase class-I DU202_03891 PF00977 Histidine biosynthesis protein DU202_03896 PF01636 Phosphotransferase enzyme family DU202_03897 PF00977 Histidine biosynthesis protein DU202_03900 PF00230 Major intrinsic protein DU202_03905 PF02705 K+ potassium transporter DU202_03907 PF12833 Helix-turn-helix domain DU202_03911 PF02525 Flavodoxin-like fold DU202_03912 PF01638 HxlR-like helix-turn-helix DU202_03916 PF01638 HxlR-like helix-turn-helix DU202_03919 PF02311 AraC-like ligand binding domain DU202_03919 PF12833 Helix-turn-helix domain DU202_03923 PF00248 Aldo/keto reductase family DU202_03928 PF03466 LysR substrate binding domain DU202_03928 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03929 PF07690 Major Facilitator Superfamily DU202_03934 PF01593 Flavin containing amine oxidoreductase DU202_03935 PF05726 Pirin C-terminal cupin domain DU202_03935 PF02678 Pirin DU202_03936 PF00857 Isochorismatase family DU202_03937 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_03938 PF00171 Aldehyde dehydrogenase family DU202_03939 PF00202 Aminotransferase class-III DU202_03940 PF00392 Bacterial regulatory proteins, gntR family DU202_03940 PF00155 Aminotransferase class I and II DU202_03941 PF00324 Amino acid permease DU202_03943 PF03591 AzlC protein DU202_03945 PF00436 Single-strand binding protein family DU202_03946 PF07690 Major Facilitator Superfamily DU202_03948 PF08543 Phosphomethylpyrimidine kinase DU202_03948 PF03070 TENA/THI-4/PQQC family DU202_03948 PF02581 Thiamine monophosphate synthase DU202_03949 PF06942 GlpM protein DU202_03951 PF08240 Alcohol dehydrogenase GroES-like domain DU202_03951 PF00107 Zinc-binding dehydrogenase DU202_03952 PF00440 Bacterial regulatory proteins, tetR family DU202_03952 PF16925 Tetracyclin repressor-like, C-terminal domain DU202_03953 PF17755 UvrA DNA-binding domain DU202_03953 PF17760 UvrA interaction domain DU202_03953 PF00005 ABC transporter DU202_03954 PF17158 Membrane-associated sensor, integral membrane domain DU202_03954 PF00990 Diguanylate cyclase, GGDEF domain DU202_03956 PF02028 BCCT, betaine/carnitine/choline family transporter DU202_03958 PF00474 Sodium:solute symporter family DU202_03959 PF04341 Protein of unknown function, DUF485 DU202_03960 PF00672 HAMP domain DU202_03960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_03960 PF00512 His Kinase A (phospho-acceptor) domain DU202_03960 PF01627 Hpt domain DU202_03960 PF00072 Response regulator receiver domain DU202_03962 PF00196 Bacterial regulatory proteins, luxR family DU202_03962 PF00072 Response regulator receiver domain DU202_03963 PF03358 NADPH-dependent FMN reductase DU202_03964 PF00296 Luciferase-like monooxygenase DU202_03965 PF01037 Lrp/AsnC ligand binding domain DU202_03966 PF00857 Isochorismatase family DU202_03967 PF16177 Acetyl-coenzyme A synthetase N-terminus DU202_03967 PF00501 AMP-binding enzyme DU202_03967 PF13193 AMP-binding enzyme C-terminal domain DU202_03969 PF00924 Mechanosensitive ion channel DU202_03970 PF04452 RNA methyltransferase DU202_03971 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DU202_03972 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DU202_03975 PF03462 PCRF domain DU202_03975 PF00472 RF-1 domain DU202_03977 PF01368 DHH family DU202_03977 PF17768 RecJ OB domain DU202_03977 PF02272 DHHA1 domain DU202_03978 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DU202_03978 PF01243 Pyridoxamine 5'-phosphate oxidase DU202_03979 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DU202_03979 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DU202_03979 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DU202_03979 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DU202_03980 PF00478 IMP dehydrogenase / GMP reductase domain DU202_03980 PF00571 CBS domain DU202_03981 PF03692 Putative zinc- or iron-chelating domain DU202_03982 PF00258 Flavodoxin DU202_03982 PF01613 Flavin reductase like domain DU202_03983 PF07715 TonB-dependent Receptor Plug Domain DU202_03983 PF00593 TonB dependent receptor DU202_03986 PF01169 Uncharacterized protein family UPF0016 DU202_03988 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DU202_03988 PF02817 e3 binding domain DU202_03988 PF00364 Biotin-requiring enzyme DU202_03989 PF00456 Transketolase, thiamine diphosphate binding domain DU202_03989 PF17831 Pyruvate dehydrogenase E1 component middle domain DU202_03990 PF01551 Peptidase family M23 DU202_03992 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DU202_03993 PF00091 Tubulin/FtsZ family, GTPase domain DU202_03993 PF12327 FtsZ family, C-terminal domain DU202_03994 PF02491 SHS2 domain inserted in FTSA DU202_03995 PF08478 POTRA domain, FtsQ-type DU202_03995 PF03799 Cell division protein FtsQ DU202_03996 PF07478 D-ala D-ala ligase C-terminus DU202_03996 PF01820 D-ala D-ala ligase N-terminus DU202_03997 PF08245 Mur ligase middle domain DU202_03997 PF01225 Mur ligase family, catalytic domain DU202_03997 PF02875 Mur ligase family, glutamate ligase domain DU202_03998 PF04101 Glycosyltransferase family 28 C-terminal domain DU202_03998 PF03033 Glycosyltransferase family 28 N-terminal domain DU202_03999 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DU202_03999 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DU202_04002 PF07715 TonB-dependent Receptor Plug Domain DU202_04002 PF00593 TonB dependent receptor DU202_04003 PF00156 Phosphoribosyl transferase domain DU202_04004 PF03372 Endonuclease/Exonuclease/phosphatase family DU202_04005 PF03960 ArsC family DU202_04007 PF07859 alpha/beta hydrolase fold DU202_04009 PF07694 5TMR of 5TMR-LYT DU202_04009 PF00990 Diguanylate cyclase, GGDEF domain DU202_04010 PF02683 Cytochrome C biogenesis protein transmembrane region DU202_04010 PF11412 Disulphide bond corrector protein DsbC DU202_04016 PF00576 HIUase/Transthyretin family DU202_04017 PF00860 Permease family DU202_04019 PF01494 FAD binding domain DU202_04020 PF03561 Allantoicase repeat DU202_04021 PF04115 Ureidoglycolate lyase DU202_04022 PF00204 DNA gyrase B DU202_04022 PF01751 Toprim domain DU202_04022 PF00986 DNA gyrase B subunit, carboxyl terminus DU202_04022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_04023 PF05728 Uncharacterised protein family (UPF0227) DU202_04028 PF00182 Chitinase class I DU202_04029 PF04717 Type VI secretion system, phage-baseplate injector DU202_04030 PF02600 Disulfide bond formation protein DsbB DU202_04031 PF04262 Glutamate-cysteine ligase DU202_04034 PF04286 Protein of unknown function (DUF445) DU202_04035 PF00155 Aminotransferase class I and II DU202_04036 PF01554 MatE DU202_04037 PF00106 short chain dehydrogenase DU202_04039 PF00486 Transcriptional regulatory protein, C terminal DU202_04039 PF00072 Response regulator receiver domain DU202_04040 PF00512 His Kinase A (phospho-acceptor) domain DU202_04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DU202_04040 PF00989 PAS fold DU202_04040 PF11808 Phosphate regulon sensor protein PhoR DU202_04043 PF03069 Acetamidase/Formamidase family DU202_04044 PF02666 Phosphatidylserine decarboxylase DU202_04045 PF00581 Rhodanese-like domain DU202_04046 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DU202_04046 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DU202_04048 PF06628 Catalase-related immune-responsive DU202_04048 PF00199 Catalase DU202_04049 PF02580 D-Tyr-tRNA(Tyr) deacylase DU202_04054 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DU202_04054 PF00925 GTP cyclohydrolase II DU202_04055 PF00885 6,7-dimethyl-8-ribityllumazine synthase DU202_04056 PF01029 NusB family DU202_04057 PF02769 AIR synthase related protein, C-terminal domain DU202_04057 PF00586 AIR synthase related protein, N-terminal domain DU202_04058 PF04608 Phosphatidylglycerophosphatase A DU202_04059 PF00132 Bacterial transferase hexapeptide (six repeats) DU202_04059 PF14602 Hexapeptide repeat of succinyl-transferase DU202_04059 PF12804 MobA-like NTP transferase domain DU202_04060 PF01380 SIS domain DU202_04061 PF01177 Asp/Glu/Hydantoin racemase DU202_04062 PF13419 Haloacid dehalogenase-like hydrolase DU202_04064 PF00491 Arginase family DU202_04065 PF01979 Amidohydrolase family DU202_04066 PF00324 Amino acid permease DU202_04069 PF00324 Amino acid permease DU202_04070 PF00221 Aromatic amino acid lyase DU202_04071 PF17391 Urocanase N-terminal domain DU202_04071 PF17392 Urocanase C-terminal domain DU202_04071 PF01175 Urocanase Rossmann-like domain DU202_04072 PF05962 HutD DU202_04073 PF00392 Bacterial regulatory proteins, gntR family DU202_04073 PF07702 UTRA domain DU202_04075 PF02492 CobW/HypB/UreG, nucleotide-binding domain DU202_04075 PF07683 Cobalamin synthesis protein cobW C-terminal domain DU202_04077 PF00324 Amino acid permease DU202_04079 PF02798 Glutathione S-transferase, N-terminal domain DU202_04079 PF14497 Glutathione S-transferase, C-terminal domain DU202_04080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DU202_04082 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DU202_04083 PF04463 Protein of unknown function (DUF523) DU202_04084 PF01554 MatE DU202_04086 PF01758 Sodium Bile acid symporter family DU202_04087 PF00857 Isochorismatase family DU202_04088 PF00701 Dihydrodipicolinate synthetase family DU202_04090 PF01259 SAICAR synthetase DU202_04092 PF01226 Formate/nitrite transporter DU202_04093 PF16193 AAA C-terminal domain DU202_04093 PF12002 MgsA AAA+ ATPase C terminal DU202_04093 PF00004 ATPase family associated with various cellular activities (AAA) DU202_04094 PF07995 Glucose / Sorbosone dehydrogenase DU202_04095 PF03692 Putative zinc- or iron-chelating domain DU202_04096 PF07043 Protein of unknown function (DUF1328) DU202_04099 PF14815 NUDIX domain DU202_04099 PF00730 HhH-GPD superfamily base excision DNA repair protein DU202_04099 PF10576 Iron-sulfur binding domain of endonuclease III DU202_04099 PF00633 Helix-hairpin-helix motif DU202_04102 PF03352 Methyladenine glycosylase DU202_04103 PF08240 Alcohol dehydrogenase GroES-like domain DU202_04103 PF00107 Zinc-binding dehydrogenase DU202_04104 PF00155 Aminotransferase class I and II DU202_04104 PF00392 Bacterial regulatory proteins, gntR family DU202_04106 PF03466 LysR substrate binding domain DU202_04106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_04107 PF00248 Aldo/keto reductase family DU202_04108 PF07690 Major Facilitator Superfamily DU202_04110 PF01113 Dihydrodipicolinate reductase, N-terminus DU202_04110 PF05173 Dihydrodipicolinate reductase, C-terminus DU202_04112 PF00684 DnaJ central domain DU202_04112 PF01556 DnaJ C terminal domain DU202_04112 PF00226 DnaJ domain DU202_04114 PF00873 AcrB/AcrD/AcrF family DU202_04115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DU202_04116 PF00440 Bacterial regulatory proteins, tetR family DU202_04116 PF08361 MAATS-type transcriptional repressor, C-terminal region DU202_04117 PF00311 Phosphoenolpyruvate carboxylase DU202_04118 PF00860 Permease family DU202_04119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DU202_04119 PF03466 LysR substrate binding domain DU202_04122 PF00920 Dehydratase family DU202_04123 PF00551 Formyl transferase DU202_04123 PF02911 Formyl transferase, C-terminal domain DU202_04124 PF01029 NusB family DU202_04124 PF01189 16S rRNA methyltransferase RsmB/F DU202_04126 PF00209 Sodium:neurotransmitter symporter family DU202_04134 PF00579 tRNA synthetases class I (W and Y) DU202_04135 PF03702 Anhydro-N-acetylmuramic acid kinase DU202_04136 PF00561 alpha/beta hydrolase fold DU202_04137 PF01521 Iron-sulphur cluster biosynthesis