locus-tag class description E4K03_00005 PF17764 3′ DNA-binding domain (3′BD) E4K03_00005 PF00270 DEAD/DEAH box helicase E4K03_00005 PF18074 Primosomal protein N C-terminal domain E4K03_00005 PF00271 Helicase conserved C-terminal domain E4K03_00005 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E4K03_00010 PF00999 Sodium/hydrogen exchanger family E4K03_00010 PF02254 TrkA-N domain E4K03_00015 PF01430 Hsp33 protein E4K03_00025 PF01556 DnaJ C terminal domain E4K03_00025 PF00226 DnaJ domain E4K03_00035 PF01544 CorA-like Mg2+ transporter protein E4K03_00040 PF03725 3' exoribonuclease family, domain 2 E4K03_00040 PF01138 3' exoribonuclease family, domain 1 E4K03_00040 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E4K03_00040 PF00013 KH domain E4K03_00040 PF00575 S1 RNA binding domain E4K03_00045 PF00312 Ribosomal protein S15 E4K03_00055 PF13538 UvrD-like helicase C-terminal domain E4K03_00060 PF12705 PD-(D/E)XK nuclease superfamily E4K03_00060 PF13361 UvrD-like helicase C-terminal domain E4K03_00060 PF00580 UvrD/REP helicase N-terminal domain E4K03_00065 PF17946 RecC C-terminal domain E4K03_00075 PF03976 Polyphosphate kinase 2 (PPK2) E4K03_00085 PF01209 ubiE/COQ5 methyltransferase family E4K03_00095 PF03109 ABC1 family E4K03_00100 PF01494 FAD binding domain E4K03_00105 PF01502 Phosphoribosyl-AMP cyclohydrolase E4K03_00120 PF00361 Proton-conducting membrane transporter E4K03_00120 PF13244 Domain of unknown function (DUF4040) E4K03_00120 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter E4K03_00120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E4K03_00125 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E4K03_00130 PF00361 Proton-conducting membrane transporter E4K03_00140 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) E4K03_00150 PF02033 Ribosome-binding factor A E4K03_00155 PF00009 Elongation factor Tu GTP binding domain E4K03_00155 PF11987 Translation-initiation factor 2 E4K03_00155 PF08364 Bacterial translation initiation factor IF-2 associated region E4K03_00155 PF04760 Translation initiation factor IF-2, N-terminal region E4K03_00160 PF13184 NusA-like KH domain E4K03_00160 PF00575 S1 RNA binding domain E4K03_00160 PF08529 NusA N-terminal domain E4K03_00165 PF02576 RimP N-terminal domain E4K03_00165 PF17384 RimP C-terminal SH3 domain E4K03_00185 PF03840 Preprotein translocase SecG subunit E4K03_00190 PF00121 Triosephosphate isomerase E4K03_00200 PF00482 Type II secretion system (T2SS), protein F E4K03_00205 PF06750 Bacterial Peptidase A24 N-terminal domain E4K03_00205 PF01478 Type IV leader peptidase family E4K03_00210 PF01121 Dephospho-CoA kinase E4K03_00220 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4K03_00220 PF00588 SpoU rRNA Methylase family E4K03_00225 PF06865 Pyrimidine/purine nucleoside phosphorylase E4K03_00235 PF02463 RecF/RecN/SMC N terminal domain E4K03_00240 PF02622 Uncharacterized ACR, COG1678 E4K03_00245 PF03652 Holliday junction resolvase E4K03_00250 PF13533 Biotin-lipoyl like E4K03_00275 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4K03_00275 PF12833 Helix-turn-helix domain E4K03_00275 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E4K03_00275 PF02805 Metal binding domain of Ada E4K03_00280 PF01066 CDP-alcohol phosphatidyltransferase E4K03_00290 PF01541 GIY-YIG catalytic domain E4K03_00290 PF02151 UvrB/uvrC motif E4K03_00290 PF08459 UvrC Helix-hairpin-helix N-terminal E4K03_00305 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4K03_00305 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4K03_00305 PF00378 Enoyl-CoA hydratase/isomerase E4K03_00310 PF00108 Thiolase, N-terminal domain E4K03_00310 PF02803 Thiolase, C-terminal domain E4K03_00325 PF09278 MerR, DNA binding E4K03_00325 PF00376 MerR family regulatory protein E4K03_00335 PF01323 DSBA-like thioredoxin domain E4K03_00350 PF00183 Hsp90 protein E4K03_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_00365 PF03553 Na+/H+ antiporter family E4K03_00365 PF13726 Na+-H+ antiporter family E4K03_00390 PF04998 RNA polymerase Rpb1, domain 5 E4K03_00390 PF05000 RNA polymerase Rpb1, domain 4 E4K03_00390 PF04997 RNA polymerase Rpb1, domain 1 E4K03_00390 PF00623 RNA polymerase Rpb1, domain 2 E4K03_00390 PF04983 RNA polymerase Rpb1, domain 3 E4K03_00395 PF04565 RNA polymerase Rpb2, domain 3 E4K03_00395 PF04563 RNA polymerase beta subunit E4K03_00395 PF04561 RNA polymerase Rpb2, domain 2 E4K03_00395 PF04560 RNA polymerase Rpb2, domain 7 E4K03_00395 PF00562 RNA polymerase Rpb2, domain 6 E4K03_00395 PF10385 RNA polymerase beta subunit external 1 domain E4K03_00400 PF16320 Ribosomal protein L7/L12 dimerisation domain E4K03_00400 PF00542 Ribosomal protein L7/L12 C-terminal domain E4K03_00405 PF00466 Ribosomal protein L10 E4K03_00410 PF00687 Ribosomal protein L1p/L10e family E4K03_00415 PF03946 Ribosomal protein L11, N-terminal domain E4K03_00415 PF00298 Ribosomal protein L11, RNA binding domain E4K03_00420 PF02357 Transcription termination factor nusG E4K03_00420 PF00467 KOW motif E4K03_00425 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E4K03_00435 PF03143 Elongation factor Tu C-terminal domain E4K03_00435 PF03144 Elongation factor Tu domain 2 E4K03_00435 PF00009 Elongation factor Tu GTP binding domain E4K03_00460 PF00425 chorismate binding enzyme E4K03_00460 PF04715 Anthranilate synthase component I, N terminal region E4K03_00465 PF13419 Haloacid dehalogenase-like hydrolase E4K03_00470 PF00498 FHA domain E4K03_00470 PF12401 Protein of unknown function (DUF2662) E4K03_00475 PF00263 Bacterial type II and III secretion system protein E4K03_00475 PF03958 Bacterial type II/III secretion system short domain E4K03_00490 PF00816 H-NS histone family E4K03_00515 PF03900 Porphobilinogen deaminase, C-terminal domain E4K03_00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E4K03_00520 PF00072 Response regulator receiver domain E4K03_00520 PF04397 LytTr DNA-binding domain E4K03_00525 PF07694 5TMR of 5TMR-LYT E4K03_00525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_00525 PF06580 Histidine kinase E4K03_00530 PF00206 Lyase E4K03_00530 PF14698 Argininosuccinate lyase C-terminal E4K03_00535 PF04362 Bacterial Fe(2+) trafficking E4K03_00540 PF01895 PhoU domain E4K03_00545 PF02321 Outer membrane efflux protein E4K03_00550 PF00892 EamA-like transporter family E4K03_00565 PF13667 ThiC-associated domain E4K03_00565 PF01964 Radical SAM ThiC family E4K03_00570 PF00293 NUDIX domain E4K03_00575 PF00149 Calcineurin-like phosphoesterase E4K03_00580 PF01258 Prokaryotic dksA/traR C4-type zinc finger E4K03_00585 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4K03_00590 PF01098 Cell cycle protein E4K03_00595 PF02875 Mur ligase family, glutamate ligase domain E4K03_00595 PF08245 Mur ligase middle domain E4K03_00605 PF07670 Nucleoside recognition E4K03_00605 PF02421 Ferrous iron transport protein B E4K03_00605 PF07664 Ferrous iron transport protein B C terminus E4K03_00615 PF02899 Phage integrase, N-terminal SAM-like domain E4K03_00615 PF00589 Phage integrase family E4K03_00620 PF13098 Thioredoxin-like domain E4K03_00620 PF10411 Disulfide bond isomerase protein N-terminus E4K03_00625 PF03447 Homoserine dehydrogenase, NAD binding domain E4K03_00625 PF01842 ACT domain E4K03_00625 PF00742 Homoserine dehydrogenase E4K03_00630 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_00635 PF00768 D-alanyl-D-alanine carboxypeptidase E4K03_00640 PF00196 Bacterial regulatory proteins, luxR family E4K03_00640 PF00072 Response regulator receiver domain E4K03_00645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_00645 PF00512 His Kinase A (phospho-acceptor) domain E4K03_00650 PF00158 Sigma-54 interaction domain E4K03_00650 PF00072 Response regulator receiver domain E4K03_00650 PF02954 Bacterial regulatory protein, Fis family E4K03_00655 PF00595 PDZ domain E4K03_00655 PF03572 Peptidase family S41 E4K03_00660 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E4K03_00660 PF01676 Metalloenzyme superfamily E4K03_00665 PF03739 Lipopolysaccharide export system permease LptF/LptG E4K03_00675 PF00883 Cytosol aminopeptidase family, catalytic domain E4K03_00675 PF02789 Cytosol aminopeptidase family, N-terminal domain E4K03_00705 PF00677 Lumazine binding domain E4K03_00715 PF01872 RibD C-terminal domain E4K03_00715 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E4K03_00720 PF03477 ATP cone domain E4K03_00725 PF00909 Ammonium Transporter Family E4K03_00730 PF00543 Nitrogen regulatory protein P-II E4K03_00740 PF13335 Magnesium chelatase, subunit ChlI C-terminal E4K03_00740 PF01078 Magnesium chelatase, subunit ChlI E4K03_00775 PF00899 ThiF family E4K03_00775 PF14461 Prokaryotic E2 family B E4K03_00795 PF01545 Cation efflux family E4K03_00795 PF16916 Dimerisation domain of Zinc Transporter E4K03_00800 PF01022 Bacterial regulatory protein, arsR family E4K03_00805 PF00403 Heavy-metal-associated domain E4K03_00810 PF00376 MerR family regulatory protein E4K03_00810 PF09278 MerR, DNA binding E4K03_00820 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_00885 PF13737 Transposase DDE domain E4K03_00900 PF13411 MerR HTH family regulatory protein E4K03_00915 PF07670 Nucleoside recognition E4K03_00915 PF02421 Ferrous iron transport protein B E4K03_00915 PF07664 Ferrous iron transport protein B C terminus E4K03_00935 PF00155 Aminotransferase class I and II E4K03_00935 PF00392 Bacterial regulatory proteins, gntR family E4K03_00940 PF00596 Class II Aldolase and Adducin N-terminal domain E4K03_00945 PF00701 Dihydrodipicolinate synthetase family E4K03_00960 PF03573 outer membrane porin, OprD family E4K03_00965 PF00719 Inorganic pyrophosphatase E4K03_00980 PF13193 AMP-binding enzyme C-terminal domain E4K03_00980 PF00501 AMP-binding enzyme E4K03_00985 PF03989 DNA gyrase C-terminal domain, beta-propeller E4K03_00985 PF00521 DNA gyrase/topoisomerase IV, subunit A E4K03_00990 PF07690 Major Facilitator Superfamily E4K03_00995 PF03458 UPF0126 domain E4K03_01000 PF02810 SEC-C motif E4K03_01005 PF03741 Integral membrane protein TerC family E4K03_01005 PF03471 Transporter associated domain E4K03_01010 PF03641 Possible lysine decarboxylase E4K03_01015 PF07690 Major Facilitator Superfamily E4K03_01025 PF00817 impB/mucB/samB family E4K03_01025 PF11799 impB/mucB/samB family C-terminal domain E4K03_01025 PF11798 IMS family HHH motif E4K03_01040 PF04055 Radical SAM superfamily E4K03_01040 PF08497 Radical SAM N-terminal E4K03_01040 PF11842 Domain of unknown function (DUF3362) E4K03_01050 PF13737 Transposase DDE domain E4K03_01060 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_01095 PF00440 Bacterial regulatory proteins, tetR family E4K03_01120 PF01327 Polypeptide deformylase E4K03_01130 PF02481 DNA recombination-mediator protein A E4K03_01130 PF17782 DprA winged helix domain E4K03_01135 PF01300 Telomere recombination E4K03_01140 PF00892 EamA-like transporter family E4K03_01145 PF00440 Bacterial regulatory proteins, tetR family E4K03_01150 PF07690 Major Facilitator Superfamily E4K03_01160 PF00255 Glutathione peroxidase E4K03_01170 PF11008 Protein of unknown function (DUF2846) E4K03_01175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E4K03_01180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4K03_01180 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4K03_01185 PF00231 ATP synthase E4K03_01190 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4K03_01190 PF00306 ATP synthase alpha/beta chain, C terminal domain E4K03_01190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4K03_01195 PF00213 ATP synthase delta (OSCP) subunit E4K03_01200 PF00430 ATP synthase B/B' CF(0) E4K03_01205 PF00137 ATP synthase subunit C E4K03_01210 PF00119 ATP synthase A chain E4K03_01230 PF00005 ABC transporter E4K03_01235 PF00950 ABC 3 transport family E4K03_01240 PF01810 LysE type translocator E4K03_01245 PF04261 Dyp-type peroxidase family E4K03_01250 PF00390 Malic enzyme, N-terminal domain E4K03_01250 PF03949 Malic enzyme, NAD binding domain E4K03_01255 PF13737 Transposase DDE domain E4K03_01260 PF00750 tRNA synthetases class I (R) E4K03_01260 PF05746 DALR anticodon binding domain E4K03_01260 PF03485 Arginyl tRNA synthetase N terminal domain E4K03_01280 PF02678 Pirin E4K03_01280 PF05726 Pirin C-terminal cupin domain E4K03_01290 PF03551 Transcriptional regulator PadR-like family E4K03_01295 PF01909 Nucleotidyltransferase domain E4K03_01295 PF13427 Domain of unknown function (DUF4111) E4K03_01300 PF00958 GMP synthase C terminal domain E4K03_01300 PF02540 NAD synthase E4K03_01300 PF00117 Glutamine amidotransferase class-I E4K03_01305 PF04286 Protein of unknown function (DUF445) E4K03_01310 PF07681 DoxX E4K03_01315 PF09335 SNARE associated Golgi protein E4K03_01330 PF13614 AAA domain E4K03_01340 PF01722 BolA-like protein E4K03_01355 PF13737 Transposase DDE domain E4K03_01360 PF13737 Transposase DDE domain E4K03_01370 PF00765 Autoinducer synthase E4K03_01375 PF07690 Major Facilitator Superfamily E4K03_01375 PF00083 Sugar (and other) transporter E4K03_01380 PF00378 Enoyl-CoA hydratase/isomerase E4K03_01385 PF00378 Enoyl-CoA hydratase/isomerase E4K03_01390 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_01390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_01390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_01395 PF00501 AMP-binding enzyme E4K03_01395 PF13193 AMP-binding enzyme C-terminal domain E4K03_01400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4K03_01400 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4K03_01405 PF00171 Aldehyde dehydrogenase family E4K03_01415 PF00324 Amino acid permease E4K03_01420 PF00324 Amino acid permease E4K03_01425 PF01042 Endoribonuclease L-PSP E4K03_01430 PF01168 Alanine racemase, N-terminal domain E4K03_01430 PF00842 Alanine racemase, C-terminal domain E4K03_01435 PF01266 FAD dependent oxidoreductase E4K03_01440 PF01037 Lrp/AsnC ligand binding domain E4K03_01455 PF13737 Transposase DDE domain E4K03_01475 PF00849 RNA pseudouridylate synthase E4K03_01485 PF13737 Transposase DDE domain E4K03_01500 PF13737 Transposase DDE domain E4K03_01535 PF00330 Aconitase family (aconitate hydratase) E4K03_01535 PF00694 Aconitase C-terminal domain E4K03_01540 PF00285 Citrate synthase, C-terminal domain E4K03_01550 PF07729 FCD domain E4K03_01550 PF00392 Bacterial regulatory proteins, gntR family E4K03_01560 PF00155 Aminotransferase class I and II E4K03_01565 PF01565 FAD binding domain E4K03_01565 PF09330 D-lactate dehydrogenase, membrane binding E4K03_01570 PF01070 FMN-dependent dehydrogenase E4K03_01575 PF07729 FCD domain E4K03_01575 PF00392 Bacterial regulatory proteins, gntR family E4K03_01580 PF02652 L-lactate permease E4K03_01585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4K03_01585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4K03_01585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4K03_01585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4K03_01590 PF16363 GDP-mannose 4,6 dehydratase E4K03_01595 PF00342 Phosphoglucose isomerase E4K03_01600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E4K03_01600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E4K03_01600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E4K03_01605 PF00483 Nucleotidyl transferase E4K03_01610 PF02397 Bacterial sugar transferase E4K03_01615 PF00953 Glycosyl transferase family 4 E4K03_01620 PF01370 NAD dependent epimerase/dehydratase family E4K03_01625 PF13579 Glycosyl transferase 4-like domain E4K03_01630 PF02350 UDP-N-acetylglucosamine 2-epimerase E4K03_01635 PF01370 NAD dependent epimerase/dehydratase family E4K03_01640 PF08485 Polysaccharide biosynthesis protein C-terminal E4K03_01640 PF02719 Polysaccharide biosynthesis protein E4K03_01655 PF07922 Glycosyltransferase family 52 E4K03_01660 PF01943 Polysaccharide biosynthesis protein E4K03_01665 PF02348 Cytidylyltransferase E4K03_01670 PF00483 Nucleotidyl transferase E4K03_01680 PF08666 SAF domain E4K03_01680 PF03102 NeuB family E4K03_01685 PF02350 UDP-N-acetylglucosamine 2-epimerase E4K03_01690 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4K03_01695 PF02719 Polysaccharide biosynthesis protein E4K03_01700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E4K03_01700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E4K03_01700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E4K03_01705 PF18412 Outer-membrane lipoprotein Wza C-terminal domain E4K03_01705 PF10531 SLBB domain E4K03_01705 PF02563 Polysaccharide biosynthesis/export protein E4K03_01710 PF01451 Low molecular weight phosphotyrosine protein phosphatase E4K03_01715 PF02706 Chain length determinant protein E4K03_01715 PF13807 G-rich domain on putative tyrosine kinase E4K03_01715 PF13614 AAA domain E4K03_01720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4K03_01720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4K03_01725 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4K03_01725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4K03_01730 PF03023 Lipid II flippase MurJ E4K03_01735 PF01510 N-acetylmuramoyl-L-alanine amidase E4K03_01740 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E4K03_01740 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E4K03_01750 PF04185 Phosphoesterase family E4K03_01750 PF05506 Domain of unknown function (DUF756) E4K03_01755 PF03725 3' exoribonuclease family, domain 2 E4K03_01755 PF01138 3' exoribonuclease family, domain 1 E4K03_01760 PF00487 Fatty acid desaturase E4K03_01765 PF00175 Oxidoreductase NAD-binding domain E4K03_01770 PF00440 Bacterial regulatory proteins, tetR family E4K03_01775 PF08360 QacR-like protein, C-terminal region E4K03_01775 PF00440 Bacterial regulatory proteins, tetR family E4K03_01780 PF01323 DSBA-like thioredoxin domain E4K03_01790 PF13419 Haloacid dehalogenase-like hydrolase E4K03_01795 PF00106 short chain dehydrogenase E4K03_01810 PF00583 Acetyltransferase (GNAT) family E4K03_01810 PF00696 Amino acid kinase family E4K03_01815 PF09084 NMT1/THI5 like E4K03_01820 PF09084 NMT1/THI5 like E4K03_01825 PF00296 Luciferase-like monooxygenase E4K03_01830 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_01835 PF00005 ABC transporter E4K03_01840 PF08362 YcdC-like protein, C-terminal region E4K03_01840 PF00440 Bacterial regulatory proteins, tetR family E4K03_01845 PF01048 Phosphorylase superfamily E4K03_01860 PF01687 Riboflavin kinase E4K03_01860 PF06574 FAD synthetase E4K03_01865 PF08264 Anticodon-binding domain of tRNA E4K03_01865 PF00133 tRNA synthetases class I (I, L, M and V) E4K03_01865 PF06827 Zinc finger found in FPG and IleRS E4K03_01870 PF01252 Signal peptidase (SPase) II E4K03_01875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4K03_01915 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E4K03_01920 PF07859 alpha/beta hydrolase fold E4K03_01945 PF01025 GrpE E4K03_01950 PF00012 Hsp70 protein E4K03_01980 PF13406 Transglycosylase SLT domain E4K03_01985 PF02222 ATP-grasp domain E4K03_01985 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E4K03_01990 PF00731 AIR carboxylase E4K03_02005 PF08245 Mur ligase middle domain E4K03_02005 PF02875 Mur ligase family, glutamate ligase domain E4K03_02005 PF01225 Mur ligase family, catalytic domain E4K03_02015 PF00872 Transposase, Mutator family E4K03_02020 PF01569 PAP2 superfamily E4K03_02025 PF03741 Integral membrane protein TerC family E4K03_02035 PF03738 Glutathionylspermidine synthase preATP-grasp E4K03_02040 PF00355 Rieske [2Fe-2S] domain E4K03_02045 PF01979 Amidohydrolase family E4K03_02050 PF00156 Phosphoribosyl transferase domain E4K03_02060 PF10411 Disulfide bond isomerase protein N-terminus E4K03_02060 PF13098 Thioredoxin-like domain E4K03_02065 PF01545 Cation efflux family E4K03_02065 PF16916 Dimerisation domain of Zinc Transporter E4K03_02070 PF02583 Metal-sensitive transcriptional repressor E4K03_02075 PF12631 MnmE helical domain E4K03_02075 PF10396 GTP-binding protein TrmE N-terminus E4K03_02075 PF01926 50S ribosome-binding GTPase E4K03_02080 PF14849 YidC periplasmic domain E4K03_02080 PF02096 60Kd inner membrane protein E4K03_02085 PF01809 Putative membrane protein insertion efficiency factor E4K03_02090 PF00825 Ribonuclease P E4K03_02095 PF00468 Ribosomal protein L34 E4K03_02100 PF00308 Bacterial dnaA protein E4K03_02100 PF08299 Bacterial dnaA protein helix-turn-helix E4K03_02100 PF11638 DnaA N-terminal domain E4K03_02105 PF00712 DNA polymerase III beta subunit, N-terminal domain E4K03_02105 PF02767 DNA polymerase III beta subunit, central domain E4K03_02105 PF02768 DNA polymerase III beta subunit, C-terminal domain E4K03_02110 PF02463 RecF/RecN/SMC N terminal domain E4K03_02115 PF18053 DNA gyrase B subunit insert domain E4K03_02115 PF00986 DNA gyrase B subunit, carboxyl terminus E4K03_02115 PF00204 DNA gyrase B E4K03_02115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_02115 PF01751 Toprim domain E4K03_02125 PF09335 SNARE associated Golgi protein E4K03_02130 PF00005 ABC transporter E4K03_02130 PF12848 ABC transporter E4K03_02150 PF01521 Iron-sulphur cluster biosynthesis E4K03_02155 PF00561 alpha/beta hydrolase fold E4K03_02160 PF03702 Anhydro-N-acetylmuramic acid kinase E4K03_02165 PF00579 tRNA synthetases class I (W and Y) E4K03_02215 PF00209 Sodium:neurotransmitter symporter family E4K03_02225 PF01029 NusB family E4K03_02225 PF01189 16S rRNA methyltransferase RsmB/F E4K03_02230 PF02911 Formyl transferase, C-terminal domain E4K03_02230 PF00551 Formyl transferase E4K03_02235 PF00920 Dehydratase family E4K03_02250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_02250 PF03466 LysR substrate binding domain E4K03_02255 PF00860 Permease family E4K03_02260 PF00311 Phosphoenolpyruvate carboxylase E4K03_02265 PF00440 Bacterial regulatory proteins, tetR family E4K03_02265 PF08361 MAATS-type transcriptional repressor, C-terminal region E4K03_02285 PF00873 AcrB/AcrD/AcrF family E4K03_02295 PF00226 DnaJ domain E4K03_02295 PF00684 DnaJ central domain E4K03_02295 PF01556 DnaJ C terminal domain E4K03_02305 PF05173 Dihydrodipicolinate reductase, C-terminus E4K03_02305 PF01113 Dihydrodipicolinate reductase, N-terminus E4K03_02315 PF07690 Major Facilitator Superfamily E4K03_02320 PF00248 Aldo/keto reductase family E4K03_02325 PF03466 LysR substrate binding domain E4K03_02325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_02340 PF00155 Aminotransferase class I and II E4K03_02340 PF00392 Bacterial regulatory proteins, gntR family E4K03_02345 PF00107 Zinc-binding dehydrogenase E4K03_02345 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_02350 PF03352 Methyladenine glycosylase E4K03_02365 PF14815 NUDIX domain E4K03_02365 PF10576 Iron-sulfur binding domain of endonuclease III E4K03_02365 PF00730 HhH-GPD superfamily base excision DNA repair protein E4K03_02365 PF00633 Helix-hairpin-helix motif E4K03_02380 PF07043 Protein of unknown function (DUF1328) E4K03_02385 PF03692 Putative zinc- or iron-chelating domain E4K03_02390 PF07995 Glucose / Sorbosone dehydrogenase E4K03_02395 PF16193 AAA C-terminal domain E4K03_02395 PF12002 MgsA AAA+ ATPase C terminal E4K03_02395 PF00004 ATPase family associated with various cellular activities (AAA) E4K03_02400 PF01226 Formate/nitrite transporter E4K03_02410 PF01259 SAICAR synthetase E4K03_02420 PF00701 Dihydrodipicolinate synthetase family E4K03_02440 PF01758 Sodium Bile acid symporter family E4K03_02445 PF01554 MatE E4K03_02450 PF04463 Protein of unknown function (DUF523) E4K03_02455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4K03_02465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4K03_02470 PF02798 Glutathione S-transferase, N-terminal domain E4K03_02470 PF14497 Glutathione S-transferase, C-terminal domain E4K03_02480 PF00324 Amino acid permease E4K03_02490 PF07683 Cobalamin synthesis protein cobW C-terminal domain E4K03_02490 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4K03_02500 PF07702 UTRA domain E4K03_02500 PF00392 Bacterial regulatory proteins, gntR family E4K03_02505 PF05962 HutD E4K03_02510 PF17391 Urocanase N-terminal domain E4K03_02510 PF17392 Urocanase C-terminal domain E4K03_02510 PF01175 Urocanase Rossmann-like domain E4K03_02515 PF00221 Aromatic amino acid lyase E4K03_02520 PF00324 Amino acid permease E4K03_02525 PF01979 Amidohydrolase family E4K03_02530 PF00491 Arginase family E4K03_02540 PF13419 Haloacid dehalogenase-like hydrolase E4K03_02545 PF01177 Asp/Glu/Hydantoin racemase E4K03_02550 PF01380 SIS domain E4K03_02555 PF14602 Hexapeptide repeat of succinyl-transferase E4K03_02555 PF12804 MobA-like NTP transferase domain E4K03_02555 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_02560 PF04608 Phosphatidylglycerophosphatase A E4K03_02565 PF02769 AIR synthase related protein, C-terminal domain E4K03_02565 PF00586 AIR synthase related protein, N-terminal domain E4K03_02570 PF01029 NusB family E4K03_02575 PF00885 6,7-dimethyl-8-ribityllumazine synthase E4K03_02580 PF00925 GTP cyclohydrolase II E4K03_02580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E4K03_02610 PF02580 D-Tyr-tRNA(Tyr) deacylase E4K03_02615 PF06628 Catalase-related immune-responsive E4K03_02615 PF00199 Catalase E4K03_02625 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E4K03_02625 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E4K03_02630 PF00581 Rhodanese-like domain E4K03_02635 PF02666 Phosphatidylserine decarboxylase E4K03_02640 PF03069 Acetamidase/Formamidase family E4K03_02655 PF00512 His Kinase A (phospho-acceptor) domain E4K03_02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_02655 PF11808 Phosphate regulon sensor protein PhoR E4K03_02655 PF00989 PAS fold E4K03_02660 PF00072 Response regulator receiver domain E4K03_02660 PF00486 Transcriptional regulatory protein, C terminal E4K03_02670 PF00106 short chain dehydrogenase E4K03_02675 PF01554 MatE E4K03_02680 PF00155 Aminotransferase class I and II E4K03_02685 PF04286 Protein of unknown function (DUF445) E4K03_02700 PF04262 Glutamate-cysteine ligase E4K03_02705 PF02600 Disulfide bond formation protein DsbB E4K03_02735 PF05728 Uncharacterised protein family (UPF0227) E4K03_02740 PF00204 DNA gyrase B E4K03_02740 PF01751 Toprim domain E4K03_02740 PF00986 DNA gyrase B subunit, carboxyl terminus E4K03_02740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_02745 PF04115 Ureidoglycolate lyase E4K03_02750 PF03561 Allantoicase repeat E4K03_02755 PF01494 FAD binding domain E4K03_02765 PF00860 Permease family E4K03_02770 PF00576 HIUase/Transthyretin family E4K03_02800 PF02683 Cytochrome C biogenesis protein transmembrane region E4K03_02800 PF11412 Disulphide bond corrector protein DsbC E4K03_02805 PF07694 5TMR of 5TMR-LYT E4K03_02805 PF00990 Diguanylate cyclase, GGDEF domain E4K03_02810 PF07859 alpha/beta hydrolase fold E4K03_02820 PF03960 ArsC family E4K03_02825 PF03372 Endonuclease/Exonuclease/phosphatase family E4K03_02830 PF00156 Phosphoribosyl transferase domain E4K03_02850 PF00593 TonB dependent receptor E4K03_02850 PF07715 TonB-dependent Receptor Plug Domain E4K03_02860 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E4K03_02860 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E4K03_02865 PF03033 Glycosyltransferase family 28 N-terminal domain E4K03_02865 PF04101 Glycosyltransferase family 28 C-terminal domain E4K03_02870 PF01225 Mur ligase family, catalytic domain E4K03_02870 PF08245 Mur ligase middle domain E4K03_02870 PF02875 Mur ligase family, glutamate ligase domain E4K03_02875 PF07478 D-ala D-ala ligase C-terminus E4K03_02875 PF01820 D-ala D-ala ligase N-terminus E4K03_02880 PF08478 POTRA domain, FtsQ-type E4K03_02880 PF03799 Cell division protein FtsQ E4K03_02885 PF02491 SHS2 domain inserted in FTSA E4K03_02890 PF12327 FtsZ family, C-terminal domain E4K03_02890 PF00091 Tubulin/FtsZ family, GTPase domain E4K03_02895 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E4K03_02905 PF01551 Peptidase family M23 E4K03_02910 PF17831 Pyruvate dehydrogenase E1 component middle domain E4K03_02910 PF00456 Transketolase, thiamine diphosphate binding domain E4K03_02915 PF00364 Biotin-requiring enzyme E4K03_02915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4K03_02915 PF02817 e3 binding domain E4K03_02925 PF01169 Uncharacterized protein family UPF0016 E4K03_02930 PF07715 TonB-dependent Receptor Plug Domain E4K03_02930 PF00593 TonB dependent receptor E4K03_02935 PF01613 Flavin reductase like domain E4K03_02935 PF00258 Flavodoxin E4K03_02940 PF03692 Putative zinc- or iron-chelating domain E4K03_02945 PF00571 CBS domain E4K03_02945 PF00478 IMP dehydrogenase / GMP reductase domain E4K03_02950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4K03_02950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4K03_02950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4K03_02950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4K03_02955 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E4K03_02955 PF01243 Pyridoxamine 5'-phosphate oxidase E4K03_02960 PF17768 RecJ OB domain E4K03_02960 PF02272 DHHA1 domain E4K03_02960 PF01368 DHH family E4K03_02980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4K03_02985 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E4K03_02990 PF04452 RNA methyltransferase E4K03_02995 PF00924 Mechanosensitive ion channel E4K03_03005 PF00501 AMP-binding enzyme E4K03_03005 PF13193 AMP-binding enzyme C-terminal domain E4K03_03005 PF16177 Acetyl-coenzyme A synthetase N-terminus E4K03_03010 PF00857 Isochorismatase family E4K03_03020 PF00296 Luciferase-like monooxygenase E4K03_03025 PF03358 NADPH-dependent FMN reductase E4K03_03030 PF00196 Bacterial regulatory proteins, luxR family E4K03_03030 PF00072 Response regulator receiver domain E4K03_03040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_03040 PF00672 HAMP domain E4K03_03040 PF00512 His Kinase A (phospho-acceptor) domain E4K03_03040 PF01627 Hpt domain E4K03_03040 PF00072 Response regulator receiver domain E4K03_03045 PF04341 Protein of unknown function, DUF485 E4K03_03050 PF00474 Sodium:solute symporter family E4K03_03060 PF02028 BCCT, betaine/carnitine/choline family transporter E4K03_03070 PF17158 Membrane-associated sensor, integral membrane domain E4K03_03070 PF00990 Diguanylate cyclase, GGDEF domain E4K03_03075 PF17755 UvrA DNA-binding domain E4K03_03075 PF17760 UvrA interaction domain E4K03_03075 PF00005 ABC transporter E4K03_03080 PF16925 Tetracyclin repressor-like, C-terminal domain E4K03_03080 PF00440 Bacterial regulatory proteins, tetR family E4K03_03085 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_03085 PF00107 Zinc-binding dehydrogenase E4K03_03095 PF06942 GlpM protein E4K03_03100 PF08543 Phosphomethylpyrimidine kinase E4K03_03100 PF02581 Thiamine monophosphate synthase E4K03_03100 PF03070 TENA/THI-4/PQQC family E4K03_03110 PF07690 Major Facilitator Superfamily E4K03_03115 PF00436 Single-strand binding protein family E4K03_03125 PF03591 AzlC protein E4K03_03135 PF00324 Amino acid permease E4K03_03140 PF00392 Bacterial regulatory proteins, gntR family E4K03_03140 PF00155 Aminotransferase class I and II E4K03_03145 PF00202 Aminotransferase class-III E4K03_03150 PF00171 Aldehyde dehydrogenase family E4K03_03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_03160 PF00857 Isochorismatase family E4K03_03165 PF05726 Pirin C-terminal cupin domain E4K03_03165 PF02678 Pirin E4K03_03170 PF01593 Flavin containing amine oxidoreductase E4K03_03195 PF02463 RecF/RecN/SMC N terminal domain E4K03_03400 PF03796 DnaB-like helicase C terminal domain E4K03_03400 PF00772 DnaB-like helicase N terminal domain E4K03_03435 PF00589 Phage integrase family E4K03_03435 PF13356 Arm DNA-binding domain E4K03_03445 PF02705 K+ potassium transporter E4K03_03470 PF00230 Major intrinsic protein E4K03_03485 PF00977 Histidine biosynthesis protein E4K03_03490 PF01636 Phosphotransferase enzyme family E4K03_03505 PF03992 Antibiotic biosynthesis monooxygenase E4K03_03525 PF00005 ABC transporter E4K03_03525 PF00664 ABC transporter transmembrane region E4K03_03530 PF00977 Histidine biosynthesis protein E4K03_03545 PF00117 Glutamine amidotransferase class-I E4K03_03550 PF00475 Imidazoleglycerol-phosphate dehydratase E4K03_03570 PF00583 Acetyltransferase (GNAT) family E4K03_03575 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain E4K03_03575 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain E4K03_03585 PF00512 His Kinase A (phospho-acceptor) domain E4K03_03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_03585 PF00672 HAMP domain E4K03_03590 PF00486 Transcriptional regulatory protein, C terminal E4K03_03590 PF00072 Response regulator receiver domain E4K03_03600 PF17674 HHH domain E4K03_03600 PF00575 S1 RNA binding domain E4K03_03600 PF09371 Tex-like protein N-terminal domain E4K03_03600 PF16921 Tex protein YqgF-like domain E4K03_03605 PF00916 Sulfate permease family E4K03_03605 PF01740 STAS domain E4K03_03610 PF00106 short chain dehydrogenase E4K03_03615 PF01053 Cys/Met metabolism PLP-dependent enzyme E4K03_03620 PF12848 ABC transporter E4K03_03620 PF00005 ABC transporter E4K03_03685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4K03_03685 PF00529 HlyD membrane-fusion protein of T1SS E4K03_03690 PF00873 AcrB/AcrD/AcrF family E4K03_03695 PF01545 Cation efflux family E4K03_03725 PF00324 Amino acid permease E4K03_03740 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4K03_03755 PF01795 MraW methylase family E4K03_03765 PF03717 Penicillin-binding Protein dimerisation domain E4K03_03765 PF00905 Penicillin binding protein transpeptidase domain E4K03_03770 PF01225 Mur ligase family, catalytic domain E4K03_03770 PF02875 Mur ligase family, glutamate ligase domain E4K03_03770 PF08245 Mur ligase middle domain E4K03_03775 PF08245 Mur ligase middle domain E4K03_03775 PF02875 Mur ligase family, glutamate ligase domain E4K03_03775 PF01225 Mur ligase family, catalytic domain E4K03_03780 PF00953 Glycosyl transferase family 4 E4K03_03790 PF13847 Methyltransferase domain E4K03_03795 PF00912 Transglycosylase E4K03_03795 PF17092 Penicillin-binding protein OB-like domain E4K03_03795 PF00905 Penicillin binding protein transpeptidase domain E4K03_03835 PF01202 Shikimate kinase E4K03_03840 PF01761 3-dehydroquinate synthase E4K03_03850 PF00310 Glutamine amidotransferases class-II E4K03_03850 PF01645 Conserved region in glutamate synthase E4K03_03850 PF04898 Glutamate synthase central domain E4K03_03850 PF01493 GXGXG motif E4K03_03855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E4K03_03855 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_03865 PF04011 LemA family E4K03_03870 PF04536 TPM domain E4K03_03880 PF07963 Prokaryotic N-terminal methylation motif E4K03_03880 PF00114 Pilin (bacterial filament) E4K03_03885 PF01850 PIN domain E4K03_03895 PF04932 O-Antigen ligase E4K03_03895 PF11846 Virulence factor membrane-bound polymerase, C-terminal E4K03_03895 PF15864 Protein glycosylation ligase E4K03_03900 PF00210 Ferritin-like domain E4K03_03905 PF04324 BFD-like [2Fe-2S] binding domain E4K03_03910 PF01042 Endoribonuclease L-PSP E4K03_03915 PF13291 ACT domain E4K03_03915 PF04607 Region found in RelA / SpoT proteins E4K03_03915 PF02824 TGS domain E4K03_03925 PF01192 RNA polymerase Rpb6 E4K03_03930 PF00625 Guanylate kinase E4K03_03935 PF02401 LytB protein E4K03_03975 PF00886 Ribosomal protein S16 E4K03_03980 PF05239 PRC-barrel domain E4K03_03980 PF01782 RimM N-terminal domain E4K03_03985 PF01746 tRNA (Guanine-1)-methyltransferase E4K03_03990 PF01245 Ribosomal protein L19 E4K03_03995 PF00561 alpha/beta hydrolase fold E4K03_04000 PF03280 Proteobacterial lipase chaperone protein E4K03_04005 PF01509 TruB family pseudouridylate synthase (N terminal domain) E4K03_04005 PF09157 Pseudouridine synthase II TruB, C-terminal E4K03_04005 PF16198 tRNA pseudouridylate synthase B C-terminal domain E4K03_04010 PF01925 Sulfite exporter TauE/SafE E4K03_04020 PF00892 EamA-like transporter family E4K03_04025 PF00892 EamA-like transporter family E4K03_04030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4K03_04030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4K03_04035 PF02913 FAD linked oxidases, C-terminal domain E4K03_04035 PF01565 FAD binding domain E4K03_04045 PF03992 Antibiotic biosynthesis monooxygenase E4K03_04050 PF02525 Flavodoxin-like fold E4K03_04060 PF07690 Major Facilitator Superfamily E4K03_04065 PF12805 FUSC-like inner membrane protein yccS E4K03_04070 PF00080 Copper/zinc superoxide dismutase (SODC) E4K03_04075 PF01594 AI-2E family transporter E4K03_04080 PF13614 AAA domain E4K03_04100 PF08241 Methyltransferase domain E4K03_04110 PF00324 Amino acid permease E4K03_04115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E4K03_04115 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E4K03_04120 PF00202 Aminotransferase class-III E4K03_04125 PF04958 Arginine N-succinyltransferase beta subunit E4K03_04130 PF00171 Aldehyde dehydrogenase family E4K03_04135 PF04996 Succinylarginine dihydrolase E4K03_04140 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family E4K03_04190 PF02092 Glycyl-tRNA synthetase beta subunit E4K03_04190 PF05746 DALR anticodon binding domain E4K03_04195 PF02091 Glycyl-tRNA synthetase alpha subunit E4K03_04215 PF00571 CBS domain E4K03_04220 PF04024 PspC domain E4K03_04230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_04230 PF12806 Acetyl-CoA dehydrogenase C-terminal like E4K03_04230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_04230 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_04240 PF08501 Shikimate dehydrogenase substrate binding domain E4K03_04240 PF01488 Shikimate / quinate 5-dehydrogenase E4K03_04240 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E4K03_04245 PF01218 Coproporphyrinogen III oxidase E4K03_04250 PF00925 GTP cyclohydrolase II E4K03_04255 PF02780 Transketolase, C-terminal domain E4K03_04255 PF02779 Transketolase, pyrimidine binding domain E4K03_04255 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E4K03_04260 PF00459 Inositol monophosphatase family E4K03_04265 PF03880 DbpA RNA binding domain E4K03_04265 PF00270 DEAD/DEAH box helicase E4K03_04265 PF00271 Helicase conserved C-terminal domain E4K03_04265 PF12343 Cold shock protein DEAD box A E4K03_04275 PF00005 ABC transporter E4K03_04280 PF02405 Permease MlaE E4K03_04290 PF05494 MlaC protein E4K03_04300 PF01544 CorA-like Mg2+ transporter protein E4K03_04305 PF03641 Possible lysine decarboxylase E4K03_04310 PF00293 NUDIX domain E4K03_04315 PF00156 Phosphoribosyl transferase domain E4K03_04320 PF00270 DEAD/DEAH box helicase E4K03_04320 PF00271 Helicase conserved C-terminal domain E4K03_04320 PF17191 RecG wedge domain E4K03_04335 PF01553 Acyltransferase E4K03_04345 PF00375 Sodium:dicarboxylate symporter family E4K03_04355 PF01926 50S ribosome-binding GTPase E4K03_04360 PF02082 Transcriptional regulator E4K03_04365 PF00970 Oxidoreductase FAD-binding domain E4K03_04365 PF00175 Oxidoreductase NAD-binding domain E4K03_04365 PF00042 Globin E4K03_04375 PF05872 Bacterial protein of unknown function (DUF853) E4K03_04380 PF01053 Cys/Met metabolism PLP-dependent enzyme E4K03_04385 PF00117 Glutamine amidotransferase class-I E4K03_04390 PF00338 Ribosomal protein S10p/S20e E4K03_04395 PF00297 Ribosomal protein L3 E4K03_04400 PF00573 Ribosomal protein L4/L1 family E4K03_04405 PF00276 Ribosomal protein L23 E4K03_04410 PF00181 Ribosomal Proteins L2, RNA binding domain E4K03_04410 PF03947 Ribosomal Proteins L2, C-terminal domain E4K03_04415 PF00203 Ribosomal protein S19 E4K03_04420 PF00237 Ribosomal protein L22p/L17e E4K03_04425 PF07650 KH domain E4K03_04425 PF00189 Ribosomal protein S3, C-terminal domain E4K03_04430 PF00252 Ribosomal protein L16p/L10e E4K03_04435 PF00831 Ribosomal L29 protein E4K03_04440 PF00366 Ribosomal protein S17 E4K03_04445 PF00238 Ribosomal protein L14p/L23e E4K03_04450 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E4K03_04450 PF00467 KOW motif E4K03_04455 PF00673 ribosomal L5P family C-terminus E4K03_04455 PF00281 Ribosomal protein L5 E4K03_04460 PF00253 Ribosomal protein S14p/S29e E4K03_04465 PF00410 Ribosomal protein S8 E4K03_04470 PF00347 Ribosomal protein L6 E4K03_04475 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E4K03_04480 PF00333 Ribosomal protein S5, N-terminal domain E4K03_04480 PF03719 Ribosomal protein S5, C-terminal domain E4K03_04485 PF00327 Ribosomal protein L30p/L7e E4K03_04490 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E4K03_04495 PF00344 SecY translocase E4K03_04500 PF00444 Ribosomal protein L36 E4K03_04505 PF00416 Ribosomal protein S13/S18 E4K03_04510 PF00411 Ribosomal protein S11 E4K03_04515 PF00163 Ribosomal protein S4/S9 N-terminal domain E4K03_04515 PF01479 S4 domain E4K03_04520 PF01000 RNA polymerase Rpb3/RpoA insert domain E4K03_04520 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E4K03_04520 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E4K03_04525 PF01196 Ribosomal protein L17 E4K03_04530 PF00743 Flavin-binding monooxygenase-like E4K03_04535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_04535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_04535 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_04540 PF03937 Flavinator of succinate dehydrogenase E4K03_04570 PF09526 Probable metal-binding protein (DUF2387) E4K03_04575 PF01432 Peptidase family M3 E4K03_04580 PF00575 S1 RNA binding domain E4K03_04580 PF08461 Ribonuclease R winged-helix domain E4K03_04580 PF08206 Ribonuclease B OB domain E4K03_04580 PF17876 Cold shock domain E4K03_04580 PF00773 RNB domain E4K03_04625 PF01557 Fumarylacetoacetate (FAA) hydrolase family E4K03_04630 PF12833 Helix-turn-helix domain E4K03_04635 PF00892 EamA-like transporter family E4K03_04640 PF03631 Virulence factor BrkB E4K03_04645 PF03358 NADPH-dependent FMN reductase E4K03_04670 PF02130 Uncharacterized protein family UPF0054 E4K03_04675 PF02562 PhoH-like protein E4K03_04680 PF00919 Uncharacterized protein family UPF0004 E4K03_04680 PF04055 Radical SAM superfamily E4K03_04680 PF01938 TRAM domain E4K03_04685 PF01551 Peptidase family M23 E4K03_04685 PF10145 Phage-related minor tail protein E4K03_04685 PF01464 Transglycosylase SLT domain E4K03_04695 PF00056 lactate/malate dehydrogenase, NAD binding domain E4K03_04695 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E4K03_04715 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E4K03_04720 PF01066 CDP-alcohol phosphatidyltransferase E4K03_04765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_04765 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_04765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_04770 PF00440 Bacterial regulatory proteins, tetR family E4K03_04770 PF17932 Tetracyclin repressor-like, C-terminal domain E4K03_04785 PF01039 Carboxyl transferase domain E4K03_04790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_04790 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_04790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_04800 PF00289 Biotin carboxylase, N-terminal domain E4K03_04800 PF00364 Biotin-requiring enzyme E4K03_04800 PF02785 Biotin carboxylase C-terminal domain E4K03_04800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K03_04810 PF04386 Stringent starvation protein B E4K03_04815 PF00043 Glutathione S-transferase, C-terminal domain E4K03_04815 PF13417 Glutathione S-transferase, N-terminal domain E4K03_04820 PF00380 Ribosomal protein S9/S16 E4K03_04825 PF00572 Ribosomal protein L13 E4K03_04830 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E4K03_04835 PF00398 Ribosomal RNA adenine dimethylase E4K03_04840 PF00149 Calcineurin-like phosphoesterase E4K03_04870 PF01926 50S ribosome-binding GTPase E4K03_04870 PF13167 GTP-binding GTPase N-terminal E4K03_04870 PF16360 GTP-binding GTPase Middle Region E4K03_04880 PF13091 PLD-like domain E4K03_04885 PF00149 Calcineurin-like phosphoesterase E4K03_04885 PF10518 TAT (twin-arginine translocation) pathway signal sequence E4K03_04890 PF00691 OmpA family E4K03_04890 PF01389 OmpA-like transmembrane domain E4K03_04895 PF17152 Periplasmic sensor domain E4K03_04895 PF00990 Diguanylate cyclase, GGDEF domain E4K03_04930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4K03_04930 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_04940 PF00753 Metallo-beta-lactamase superfamily E4K03_04940 PF04273 Putative phosphatase (DUF442) E4K03_04950 PF00085 Thioredoxin E4K03_04955 PF03061 Thioesterase superfamily E4K03_04965 PF04461 Protein of unknown function (DUF520) E4K03_04975 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E4K03_04975 PF01266 FAD dependent oxidoreductase E4K03_04985 PF03795 YCII-related domain E4K03_04990 PF04279 Intracellular septation protein A E4K03_04995 PF02811 PHP domain E4K03_05000 PF01062 Bestrophin, RFP-TM, chloride channel E4K03_05005 PF04002 RadC-like JAB domain E4K03_05010 PF02441 Flavoprotein E4K03_05010 PF04127 DNA / pantothenate metabolism flavoprotein E4K03_05020 PF07549 SecD/SecF GG Motif E4K03_05020 PF02355 Protein export membrane protein E4K03_05025 PF07549 SecD/SecF GG Motif E4K03_05025 PF13721 SecD export protein N-terminal TM region E4K03_05025 PF02355 Protein export membrane protein E4K03_05030 PF02699 Preprotein translocase subunit E4K03_05035 PF01702 Queuine tRNA-ribosyltransferase E4K03_05055 PF02547 Queuosine biosynthesis protein E4K03_05065 PF00512 His Kinase A (phospho-acceptor) domain E4K03_05065 PF07689 KaiB domain E4K03_05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_05070 PF08335 GlnD PII-uridylyltransferase E4K03_05070 PF03710 Glutamate-ammonia ligase adenylyltransferase E4K03_05075 PF01063 Amino-transferase class IV E4K03_05085 PF01522 Polysaccharide deacetylase E4K03_05090 PF13439 Glycosyltransferase Family 4 E4K03_05090 PF00534 Glycosyl transferases group 1 E4K03_05100 PF16363 GDP-mannose 4,6 dehydratase E4K03_05105 PF04321 RmlD substrate binding domain E4K03_05110 PF00483 Nucleotidyl transferase E4K03_05115 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase E4K03_05120 PF00535 Glycosyl transferase family 2 E4K03_05135 PF00152 tRNA synthetases class II (D, K and N) E4K03_05135 PF01336 OB-fold nucleic acid binding domain E4K03_05135 PF02938 GAD domain E4K03_05145 PF07715 TonB-dependent Receptor Plug Domain E4K03_05145 PF00593 TonB dependent receptor E4K03_05165 PF06146 Phosphate-starvation-inducible E E4K03_05170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_05170 PF12806 Acetyl-CoA dehydrogenase C-terminal like E4K03_05170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_05170 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_05175 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_05175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_05175 PF12806 Acetyl-CoA dehydrogenase C-terminal like E4K03_05175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_05185 PF00512 His Kinase A (phospho-acceptor) domain E4K03_05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_05185 PF00672 HAMP domain E4K03_05190 PF00072 Response regulator receiver domain E4K03_05190 PF00486 Transcriptional regulatory protein, C terminal E4K03_05195 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E4K03_05215 PF01923 Cobalamin adenosyltransferase E4K03_05220 PF07715 TonB-dependent Receptor Plug Domain E4K03_05220 PF00593 TonB dependent receptor E4K03_05225 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E4K03_05230 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_05255 PF00290 Tryptophan synthase alpha chain E4K03_05260 PF01039 Carboxyl transferase domain E4K03_05265 PF02875 Mur ligase family, glutamate ligase domain E4K03_05265 PF08245 Mur ligase middle domain E4K03_05280 PF00753 Metallo-beta-lactamase superfamily E4K03_05285 PF00578 AhpC/TSA family E4K03_05285 PF10417 C-terminal domain of 1-Cys peroxiredoxin E4K03_05290 PF02810 SEC-C motif E4K03_05290 PF07517 SecA DEAD-like domain E4K03_05290 PF01043 SecA preprotein cross-linking domain E4K03_05290 PF07516 SecA Wing and Scaffold domain E4K03_05305 PF03006 Haemolysin-III related E4K03_05330 PF00378 Enoyl-CoA hydratase/isomerase E4K03_05330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4K03_05330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4K03_05335 PF00108 Thiolase, N-terminal domain E4K03_05335 PF02803 Thiolase, C-terminal domain E4K03_05340 PF02311 AraC-like ligand binding domain E4K03_05340 PF12833 Helix-turn-helix domain E4K03_05345 PF02515 CoA-transferase family III E4K03_05350 PF04966 Carbohydrate-selective porin, OprB family E4K03_05355 PF01011 PQQ enzyme repeat E4K03_05360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4K03_05360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4K03_05370 PF00893 Small Multidrug Resistance protein E4K03_05380 PF00108 Thiolase, N-terminal domain E4K03_05380 PF02803 Thiolase, C-terminal domain E4K03_05390 PF13505 Outer membrane protein beta-barrel domain E4K03_05390 PF00691 OmpA family E4K03_05395 PF01139 tRNA-splicing ligase RtcB E4K03_05400 PF00324 Amino acid permease E4K03_05405 PF05175 Methyltransferase small domain E4K03_05405 PF08468 Methyltransferase small domain N-terminal E4K03_05410 PF00860 Permease family E4K03_05420 PF01741 Large-conductance mechanosensitive channel, MscL E4K03_05435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E4K03_05435 PF06827 Zinc finger found in FPG and IleRS E4K03_05435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E4K03_05440 PF02245 Methylpurine-DNA glycosylase (MPG) E4K03_05445 PF00593 TonB dependent receptor E4K03_05445 PF07715 TonB-dependent Receptor Plug Domain E4K03_05450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4K03_05455 PF03547 Membrane transport protein E4K03_05465 PF10411 Disulfide bond isomerase protein N-terminus E4K03_05465 PF13098 Thioredoxin-like domain E4K03_05470 PF01571 Aminomethyltransferase folate-binding domain E4K03_05480 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4K03_05480 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4K03_05485 PF00860 Permease family E4K03_05490 PF01613 Flavin reductase like domain E4K03_05495 PF01042 Endoribonuclease L-PSP E4K03_05500 PF00857 Isochorismatase family E4K03_05505 PF00296 Luciferase-like monooxygenase E4K03_05510 PF00881 Nitroreductase family E4K03_05515 PF12697 Alpha/beta hydrolase family E4K03_05520 PF04343 Protein of unknown function, DUF488 E4K03_05525 PF03831 PhnA domain E4K03_05525 PF08274 PhnA Zinc-Ribbon E4K03_05530 PF07411 Domain of unknown function (DUF1508) E4K03_05535 PF03129 Anticodon binding domain E4K03_05535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4K03_05535 PF04073 Aminoacyl-tRNA editing domain E4K03_05540 PF00873 AcrB/AcrD/AcrF family E4K03_05555 PF00072 Response regulator receiver domain E4K03_05560 PF00072 Response regulator receiver domain E4K03_05565 PF01584 CheW-like domain E4K03_05570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4K03_05570 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E4K03_05585 PF01546 Peptidase family M20/M25/M40 E4K03_05585 PF07687 Peptidase dimerisation domain E4K03_05590 PF08085 Entericidin EcnA/B family E4K03_05600 PF04304 Protein of unknown function (DUF454) E4K03_05605 PF03734 L,D-transpeptidase catalytic domain E4K03_05605 PF17969 L,D-transpeptidase C-terminal domain E4K03_05645 PF00175 Oxidoreductase NAD-binding domain E4K03_05645 PF00258 Flavodoxin E4K03_05645 PF00667 FAD binding domain E4K03_05655 PF12805 FUSC-like inner membrane protein yccS E4K03_05660 PF07690 Major Facilitator Superfamily E4K03_05665 PF00881 Nitroreductase family E4K03_05680 PF01235 Sodium:alanine symporter family E4K03_05685 PF01734 Patatin-like phospholipase E4K03_05690 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_05690 PF13291 ACT domain E4K03_05695 PF05992 SbmA/BacA-like family E4K03_05700 PF13737 Transposase DDE domain E4K03_05705 PF05649 Peptidase family M13 E4K03_05705 PF01431 Peptidase family M13 E4K03_05730 PF02934 GatB/GatE catalytic domain E4K03_05730 PF02637 GatB domain E4K03_05735 PF01425 Amidase E4K03_05740 PF02686 Glu-tRNAGln amidotransferase C subunit E4K03_05750 PF04085 rod shape-determining protein MreC E4K03_05755 PF04093 rod shape-determining protein MreD E4K03_05760 PF02545 Maf-like protein E4K03_05765 PF10150 Ribonuclease E/G family E4K03_05765 PF00575 S1 RNA binding domain E4K03_05775 PF06974 Protein of unknown function (DUF1298) E4K03_05775 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain E4K03_05780 PF01507 Phosphoadenosine phosphosulfate reductase family E4K03_05795 PF02525 Flavodoxin-like fold E4K03_05815 PF02673 Bacitracin resistance protein BacA E4K03_05820 PF12833 Helix-turn-helix domain E4K03_05820 PF06719 AraC-type transcriptional regulator N-terminus E4K03_05825 PF08659 KR domain E4K03_05825 PF02801 Beta-ketoacyl synthase, C-terminal domain E4K03_05825 PF00109 Beta-ketoacyl synthase, N-terminal domain E4K03_05825 PF16197 Ketoacyl-synthetase C-terminal extension E4K03_05825 PF09277 Erythronolide synthase, docking E4K03_05825 PF08990 Erythronolide synthase docking E4K03_05825 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_05825 PF00698 Acyl transferase domain E4K03_05825 PF14765 Polyketide synthase dehydratase E4K03_05825 PF00550 Phosphopantetheine attachment site E4K03_05830 PF01965 DJ-1/PfpI family E4K03_05840 PF00324 Amino acid permease E4K03_05845 PF04303 PrpF protein E4K03_05850 PF00348 Polyprenyl synthetase E4K03_05855 PF04237 YjbR E4K03_05860 PF01145 SPFH domain / Band 7 family E4K03_05870 PF01734 Patatin-like phospholipase E4K03_05890 PF08019 Phosphoethanolamine transferase EptA/EptB E4K03_05890 PF00884 Sulfatase E4K03_05895 PF00072 Response regulator receiver domain E4K03_05895 PF00486 Transcriptional regulatory protein, C terminal E4K03_05900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_05900 PF08521 Two-component sensor kinase N-terminal E4K03_05900 PF00512 His Kinase A (phospho-acceptor) domain E4K03_05910 PF00909 Ammonium Transporter Family E4K03_05925 PF00133 tRNA synthetases class I (I, L, M and V) E4K03_05925 PF08264 Anticodon-binding domain of tRNA E4K03_05925 PF10458 Valyl tRNA synthetase tRNA binding arm E4K03_05945 PF01906 Putative heavy-metal-binding E4K03_05950 PF01906 Putative heavy-metal-binding E4K03_05955 PF02321 Outer membrane efflux protein E4K03_05960 PF00873 AcrB/AcrD/AcrF family E4K03_05965 PF00529 HlyD membrane-fusion protein of T1SS E4K03_05965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4K03_05970 PF01569 PAP2 superfamily E4K03_05980 PF00348 Polyprenyl synthetase E4K03_05990 PF00829 Ribosomal prokaryotic L21 protein E4K03_05995 PF01016 Ribosomal L27 protein E4K03_06000 PF03548 Outer membrane lipoprotein carrier protein LolA E4K03_06010 PF02403 Seryl-tRNA synthetase N-terminal domain E4K03_06010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4K03_06015 PF10414 Sirohaem synthase dimerisation region E4K03_06015 PF14824 Sirohaem biosynthesis protein central E4K03_06015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4K03_06020 PF00588 SpoU rRNA Methylase family E4K03_06025 PF01638 HxlR-like helix-turn-helix E4K03_06030 PF03358 NADPH-dependent FMN reductase E4K03_06035 PF13520 Amino acid permease E4K03_06040 PF00465 Iron-containing alcohol dehydrogenase E4K03_06050 PF03099 Biotin/lipoate A/B protein ligase family E4K03_06055 PF04359 Protein of unknown function (DUF493) E4K03_06060 PF04546 Sigma-70, non-essential region E4K03_06060 PF03979 Sigma-70 factor, region 1.1 E4K03_06060 PF00140 Sigma-70 factor, region 1.2 E4K03_06060 PF04539 Sigma-70 region 3 E4K03_06060 PF04545 Sigma-70, region 4 E4K03_06060 PF04542 Sigma-70 region 2 E4K03_06085 PF00285 Citrate synthase, C-terminal domain E4K03_06090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E4K03_06095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E4K03_06100 PF02910 Fumarate reductase flavoprotein C-term E4K03_06100 PF00890 FAD binding domain E4K03_06105 PF13085 2Fe-2S iron-sulfur cluster binding domain E4K03_06120 PF00676 Dehydrogenase E1 component E4K03_06120 PF16078 2-oxoglutarate dehydrogenase N-terminus E4K03_06120 PF02779 Transketolase, pyrimidine binding domain E4K03_06120 PF16870 2-oxoglutarate dehydrogenase C-terminal E4K03_06125 PF02817 e3 binding domain E4K03_06125 PF00364 Biotin-requiring enzyme E4K03_06125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4K03_06130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4K03_06130 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_06135 PF00549 CoA-ligase E4K03_06135 PF08442 ATP-grasp domain E4K03_06140 PF00549 CoA-ligase E4K03_06140 PF02629 CoA binding domain E4K03_06145 PF00579 tRNA synthetases class I (W and Y) E4K03_06150 PF05661 Protein of unknown function (DUF808) E4K03_06155 PF04228 Putative neutral zinc metallopeptidase E4K03_06160 PF00999 Sodium/hydrogen exchanger family E4K03_06245 PF09587 Bacterial capsule synthesis protein PGA_cap E4K03_06255 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4K03_06260 PF00582 Universal stress protein family E4K03_06265 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_06270 PF01042 Endoribonuclease L-PSP E4K03_06275 PF00440 Bacterial regulatory proteins, tetR family E4K03_06280 PF01272 Transcription elongation factor, GreA/GreB, C-term E4K03_06280 PF03449 Transcription elongation factor, N-terminal E4K03_06285 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E4K03_06285 PF02142 MGS-like domain E4K03_06285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K03_06290 PF00117 Glutamine amidotransferase class-I E4K03_06290 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E4K03_06305 PF01985 CRS1 / YhbY (CRM) domain E4K03_06310 PF01728 FtsJ-like methyltransferase E4K03_06315 PF06480 FtsH Extracellular E4K03_06315 PF00004 ATPase family associated with various cellular activities (AAA) E4K03_06315 PF17862 AAA+ lid domain E4K03_06315 PF01434 Peptidase family M41 E4K03_06320 PF00809 Pterin binding enzyme E4K03_06340 PF09423 PhoD-like phosphatase E4K03_06340 PF16655 PhoD-like phosphatase, N-terminal domain E4K03_06355 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E4K03_06355 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E4K03_06370 PF00083 Sugar (and other) transporter E4K03_06375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4K03_06375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4K03_06380 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E4K03_06380 PF01266 FAD dependent oxidoreductase E4K03_06385 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain E4K03_06385 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain E4K03_06390 PF00781 Diacylglycerol kinase catalytic domain E4K03_06395 PF00149 Calcineurin-like phosphoesterase E4K03_06400 PF00166 Chaperonin 10 Kd subunit E4K03_06405 PF00118 TCP-1/cpn60 chaperonin family E4K03_06410 PF01219 Prokaryotic diacylglycerol kinase E4K03_06415 PF00753 Metallo-beta-lactamase superfamily E4K03_06420 PF03009 Glycerophosphoryl diester phosphodiesterase family E4K03_06425 PF00873 AcrB/AcrD/AcrF family E4K03_06435 PF01435 Peptidase family M48 E4K03_06440 PF01464 Transglycosylase SLT domain E4K03_06450 PF01171 PP-loop family E4K03_06460 PF01464 Transglycosylase SLT domain E4K03_06460 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4K03_06465 PF03449 Transcription elongation factor, N-terminal E4K03_06465 PF01272 Transcription elongation factor, GreA/GreB, C-term E4K03_06480 PF00668 Condensation domain E4K03_06480 PF13193 AMP-binding enzyme C-terminal domain E4K03_06480 PF00550 Phosphopantetheine attachment site E4K03_06480 PF00501 AMP-binding enzyme E4K03_06480 PF00975 Thioesterase domain E4K03_06510 PF09857 Putative toxin of bacterial toxin-antitoxin pair E4K03_06530 PF00881 Nitroreductase family E4K03_06545 PF02595 Glycerate kinase family E4K03_06550 PF00384 Molybdopterin oxidoreductase E4K03_06555 PF02634 FdhD/NarQ family E4K03_06560 PF06803 Protein of unknown function (DUF1232) E4K03_06565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4K03_06565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4K03_06565 PF11890 Domain of unknown function (DUF3410) E4K03_06570 PF00152 tRNA synthetases class II (D, K and N) E4K03_06580 PF18073 Rubredoxin metal binding domain E4K03_06585 PF00324 Amino acid permease E4K03_06595 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4K03_06595 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E4K03_06600 PF01678 Diaminopimelate epimerase E4K03_06605 PF01810 LysE type translocator E4K03_06610 PF02899 Phage integrase, N-terminal SAM-like domain E4K03_06610 PF00589 Phage integrase family E4K03_06615 PF01012 Electron transfer flavoprotein domain E4K03_06620 PF00766 Electron transfer flavoprotein FAD-binding domain E4K03_06620 PF01012 Electron transfer flavoprotein domain E4K03_06625 PF00521 DNA gyrase/topoisomerase IV, subunit A E4K03_06625 PF03989 DNA gyrase C-terminal domain, beta-propeller E4K03_06640 PF00535 Glycosyl transferase family 2 E4K03_06660 PF13533 Biotin-lipoyl like E4K03_06670 PF00266 Aminotransferase class-V E4K03_06680 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E4K03_06690 PF02687 FtsX-like permease family E4K03_06690 PF12704 MacB-like periplasmic core domain E4K03_06695 PF00005 ABC transporter E4K03_06700 PF03772 Competence protein E4K03_06700 PF13567 Domain of unknown function (DUF4131) E4K03_06700 PF00753 Metallo-beta-lactamase superfamily E4K03_06710 PF06965 Na+/H+ antiporter 1 E4K03_06710 PF01343 Peptidase family S49 E4K03_06715 PF12697 Alpha/beta hydrolase family E4K03_06720 PF00551 Formyl transferase E4K03_06725 PF00586 AIR synthase related protein, N-terminal domain E4K03_06725 PF02769 AIR synthase related protein, C-terminal domain E4K03_06730 PF01594 AI-2E family transporter E4K03_06735 PF08299 Bacterial dnaA protein helix-turn-helix E4K03_06735 PF11638 DnaA N-terminal domain E4K03_06735 PF00308 Bacterial dnaA protein E4K03_06765 PF00588 SpoU rRNA Methylase family E4K03_06765 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4K03_06770 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain E4K03_06780 PF00691 OmpA family E4K03_06785 PF04052 TolB amino-terminal domain E4K03_06785 PF07676 WD40-like Beta Propeller Repeat E4K03_06795 PF02472 Biopolymer transport protein ExbD/TolR E4K03_06800 PF01618 MotA/TolQ/ExbB proton channel family E4K03_06805 PF03061 Thioesterase superfamily E4K03_06810 PF07687 Peptidase dimerisation domain E4K03_06810 PF01546 Peptidase family M20/M25/M40 E4K03_06815 PF05496 Holliday junction DNA helicase RuvB P-loop domain E4K03_06815 PF05491 RuvB C-terminal winged helix domain E4K03_06815 PF17864 RuvB AAA lid domain E4K03_06820 PF07499 RuvA, C-terminal domain E4K03_06820 PF01330 RuvA N terminal domain E4K03_06825 PF01966 HD domain E4K03_06830 PF02769 AIR synthase related protein, C-terminal domain E4K03_06830 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E4K03_06830 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal E4K03_06835 PF07690 Major Facilitator Superfamily E4K03_06840 PF01784 NIF3 (NGG1p interacting factor 3) E4K03_06845 PF00378 Enoyl-CoA hydratase/isomerase E4K03_06850 PF00293 NUDIX domain E4K03_06850 PF01467 Cytidylyltransferase-like E4K03_06860 PF00578 AhpC/TSA family E4K03_06875 PF06508 Queuosine biosynthesis protein QueC E4K03_06885 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_06885 PF14602 Hexapeptide repeat of succinyl-transferase E4K03_06885 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E4K03_06905 PF03466 LysR substrate binding domain E4K03_06905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_06910 PF00005 ABC transporter E4K03_06910 PF12857 TOBE-like domain E4K03_06915 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_06920 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_06935 PF01063 Amino-transferase class IV E4K03_06940 PF02618 YceG-like family E4K03_06945 PF02223 Thymidylate kinase E4K03_06955 PF00890 FAD binding domain E4K03_06955 PF02910 Fumarate reductase flavoprotein C-term E4K03_06960 PF13180 PDZ domain E4K03_06970 PF06421 GTP-binding protein LepA C-terminus E4K03_06970 PF00679 Elongation factor G C-terminus E4K03_06970 PF00009 Elongation factor Tu GTP binding domain E4K03_06970 PF03144 Elongation factor Tu domain 2 E4K03_06975 PF10502 Signal peptidase, peptidase S26 E4K03_06985 PF00035 Double-stranded RNA binding motif E4K03_06985 PF14622 Ribonuclease-III-like E4K03_06990 PF07650 KH domain E4K03_06990 PF01926 50S ribosome-binding GTPase E4K03_07000 PF11967 Recombination protein O N terminal E4K03_07000 PF02565 Recombination protein O C terminal E4K03_07005 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E4K03_07010 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) E4K03_07015 PF00106 short chain dehydrogenase E4K03_07055 PF17151 Periplasmic sensor domain E4K03_07055 PF00990 Diguanylate cyclase, GGDEF domain E4K03_07065 PF17757 UvrB interaction domain E4K03_07065 PF02151 UvrB/uvrC motif E4K03_07065 PF00271 Helicase conserved C-terminal domain E4K03_07065 PF12344 Ultra-violet resistance protein B E4K03_07065 PF04851 Type III restriction enzyme, res subunit E4K03_07075 PF00892 EamA-like transporter family E4K03_07080 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4K03_07080 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4K03_07095 PF01018 GTP1/OBG E4K03_07095 PF01926 50S ribosome-binding GTPase E4K03_07100 PF00696 Amino acid kinase family E4K03_07100 PF01472 PUA domain E4K03_07110 PF07759 Protein of unknown function (DUF1615) E4K03_07115 PF01207 Dihydrouridine synthase (Dus) E4K03_07120 PF03060 Nitronate monooxygenase E4K03_07135 PF02350 UDP-N-acetylglucosamine 2-epimerase E4K03_07165 PF00875 DNA photolyase E4K03_07165 PF03441 FAD binding domain of DNA photolyase E4K03_07170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4K03_07175 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_07180 PF07943 Penicillin-binding protein 5, C-terminal domain E4K03_07180 PF00768 D-alanyl-D-alanine carboxypeptidase E4K03_07190 PF03971 Monomeric isocitrate dehydrogenase E4K03_07195 PF00849 RNA pseudouridylate synthase E4K03_07200 PF00180 Isocitrate/isopropylmalate dehydrogenase E4K03_07220 PF06779 Uncharacterised MFS-type transporter YbfB E4K03_07225 PF03466 LysR substrate binding domain E4K03_07225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_07235 PF02567 Phenazine biosynthesis-like protein E4K03_07240 PF05193 Peptidase M16 inactive domain E4K03_07240 PF00675 Insulinase (Peptidase family M16) E4K03_07265 PF02581 Thiamine monophosphate synthase E4K03_07270 PF00202 Aminotransferase class-III E4K03_07280 PF00849 RNA pseudouridylate synthase E4K03_07285 PF00271 Helicase conserved C-terminal domain E4K03_07285 PF18339 RapA N-terminal Tudor like domain 1 E4K03_07285 PF12137 RNA polymerase recycling family C-terminal E4K03_07285 PF00176 SNF2 family N-terminal domain E4K03_07285 PF18337 RapA N-terminal Tudor like domain E4K03_07295 PF00440 Bacterial regulatory proteins, tetR family E4K03_07300 PF00175 Oxidoreductase NAD-binding domain E4K03_07300 PF00970 Oxidoreductase FAD-binding domain E4K03_07300 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_07305 PF00487 Fatty acid desaturase E4K03_07310 PF02525 Flavodoxin-like fold E4K03_07325 PF00202 Aminotransferase class-III E4K03_07330 PF00282 Pyridoxal-dependent decarboxylase conserved domain E4K03_07335 PF00171 Aldehyde dehydrogenase family E4K03_07340 PF01037 Lrp/AsnC ligand binding domain E4K03_07345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4K03_07345 PF00205 Thiamine pyrophosphate enzyme, central domain E4K03_07345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4K03_07350 PF00324 Amino acid permease E4K03_07355 PF12849 PBP superfamily domain E4K03_07360 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_07365 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_07370 PF00005 ABC transporter E4K03_07375 PF08496 Peptidase family S49 N-terminal E4K03_07375 PF01343 Peptidase family S49 E4K03_07390 PF00206 Lyase E4K03_07390 PF08328 Adenylosuccinate lyase C-terminal E4K03_07395 PF04356 Protein of unknown function (DUF489) E4K03_07405 PF00293 NUDIX domain E4K03_07405 PF13344 Haloacid dehalogenase-like hydrolase E4K03_07410 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_07415 PF07943 Penicillin-binding protein 5, C-terminal domain E4K03_07415 PF00768 D-alanyl-D-alanine carboxypeptidase E4K03_07430 PF01975 Survival protein SurE E4K03_07435 PF01551 Peptidase family M23 E4K03_07435 PF01476 LysM domain E4K03_07440 PF03466 LysR substrate binding domain E4K03_07440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_07445 PF05362 Lon protease (S16) C-terminal proteolytic domain E4K03_07445 PF13654 AAA domain E4K03_07450 PF07690 Major Facilitator Superfamily E4K03_07455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4K03_07460 PF13593 SBF-like CPA transporter family (DUF4137) E4K03_07465 PF01197 Ribosomal protein L31 E4K03_07470 PF12792 CSS motif domain associated with EAL E4K03_07470 PF00563 EAL domain E4K03_07480 PF04055 Radical SAM superfamily E4K03_07485 PF01132 Elongation factor P (EF-P) OB domain E4K03_07485 PF09285 Elongation factor P, C-terminal E4K03_07485 PF08207 Elongation factor P (EF-P) KOW-like domain E4K03_07490 PF13722 5TM C-terminal transporter carbon starvation CstA E4K03_07490 PF02554 Carbon starvation protein CstA E4K03_07495 PF04328 Selenoprotein, putative E4K03_07515 PF00872 Transposase, Mutator family E4K03_07540 PF02678 Pirin E4K03_07540 PF17954 Quercetinase C-terminal cupin domain E4K03_07545 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_07550 PF13309 HTH domain E4K03_07550 PF08348 YheO-like PAS domain E4K03_07560 PF00501 AMP-binding enzyme E4K03_07560 PF13193 AMP-binding enzyme C-terminal domain E4K03_07560 PF00668 Condensation domain E4K03_07565 PF00975 Thioesterase domain E4K03_07565 PF13193 AMP-binding enzyme C-terminal domain E4K03_07565 PF00550 Phosphopantetheine attachment site E4K03_07565 PF00501 AMP-binding enzyme E4K03_07565 PF00668 Condensation domain E4K03_07570 PF01032 FecCD transport family E4K03_07575 PF01032 FecCD transport family E4K03_07580 PF00005 ABC transporter E4K03_07585 PF01497 Periplasmic binding protein E4K03_07590 PF07715 TonB-dependent Receptor Plug Domain E4K03_07590 PF00593 TonB dependent receptor E4K03_07595 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) E4K03_07600 PF00550 Phosphopantetheine attachment site E4K03_07600 PF00501 AMP-binding enzyme E4K03_07600 PF00668 Condensation domain E4K03_07605 PF13193 AMP-binding enzyme C-terminal domain E4K03_07605 PF00501 AMP-binding enzyme E4K03_07610 PF00550 Phosphopantetheine attachment site E4K03_07610 PF00857 Isochorismatase family E4K03_07615 PF00282 Pyridoxal-dependent decarboxylase conserved domain E4K03_07625 PF00005 ABC transporter E4K03_07625 PF00664 ABC transporter transmembrane region E4K03_07630 PF00664 ABC transporter transmembrane region E4K03_07630 PF00005 ABC transporter E4K03_07635 PF00975 Thioesterase domain E4K03_07645 PF00425 chorismate binding enzyme E4K03_07655 PF01208 Uroporphyrinogen decarboxylase (URO-D) E4K03_07660 PF05675 Protein of unknown function (DUF817) E4K03_07675 PF00144 Beta-lactamase E4K03_07685 PF01799 [2Fe-2S] binding domain E4K03_07685 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_07690 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain E4K03_07690 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase E4K03_07705 PF00218 Indole-3-glycerol phosphate synthase E4K03_07710 PF00591 Glycosyl transferase family, a/b domain E4K03_07710 PF02885 Glycosyl transferase family, helical bundle domain E4K03_07715 PF07715 TonB-dependent Receptor Plug Domain E4K03_07715 PF00593 TonB dependent receptor E4K03_07720 PF01433 Peptidase family M1 domain E4K03_07720 PF11838 ERAP1-like C-terminal domain E4K03_07725 PF00117 Glutamine amidotransferase class-I E4K03_07740 PF13539 D-alanyl-D-alanine carboxypeptidase E4K03_07755 PF00854 POT family E4K03_07765 PF04345 Chorismate lyase E4K03_07770 PF01040 UbiA prenyltransferase family E4K03_07805 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E4K03_07805 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E4K03_07810 PF01784 NIF3 (NGG1p interacting factor 3) E4K03_07815 PF13180 PDZ domain E4K03_07820 PF01743 Poly A polymerase head domain E4K03_07820 PF12627 Probable RNA and SrmB- binding site of polymerase A E4K03_07825 PF00390 Malic enzyme, N-terminal domain E4K03_07825 PF01515 Phosphate acetyl/butaryl transferase E4K03_07825 PF03949 Malic enzyme, NAD binding domain E4K03_07830 PF00990 Diguanylate cyclase, GGDEF domain E4K03_07830 PF00563 EAL domain E4K03_07830 PF03707 Bacterial signalling protein N terminal repeat E4K03_07840 PF04452 RNA methyltransferase E4K03_07845 PF02219 Methylenetetrahydrofolate reductase E4K03_07850 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain E4K03_07850 PF05221 S-adenosyl-L-homocysteine hydrolase E4K03_07865 PF09317 Domain of unknown function (DUF1974) E4K03_07865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_07865 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_07865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_07870 PF04055 Radical SAM superfamily E4K03_07875 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_07875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4K03_07885 PF07690 Major Facilitator Superfamily E4K03_07895 PF00557 Metallopeptidase family M24 E4K03_07900 PF00318 Ribosomal protein S2 E4K03_07905 PF00889 Elongation factor TS E4K03_07915 PF12833 Helix-turn-helix domain E4K03_07935 PF03330 Lytic transglycolase E4K03_07935 PF05036 Sporulation related domain E4K03_07940 PF13406 Transglycosylase SLT domain E4K03_07945 PF01098 Cell cycle protein E4K03_07955 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term E4K03_07955 PF14489 QueF-like protein E4K03_07960 PF01061 ABC-2 type transporter E4K03_07965 PF00005 ABC transporter E4K03_07995 PF00464 Serine hydroxymethyltransferase E4K03_08000 PF02321 Outer membrane efflux protein E4K03_08005 PF00873 AcrB/AcrD/AcrF family E4K03_08010 PF13533 Biotin-lipoyl like E4K03_08015 PF03466 LysR substrate binding domain E4K03_08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_08020 PF00893 Small Multidrug Resistance protein E4K03_08025 PF00037 4Fe-4S binding domain E4K03_08035 PF00392 Bacterial regulatory proteins, gntR family E4K03_08035 PF00155 Aminotransferase class I and II E4K03_08040 PF02567 Phenazine biosynthesis-like protein E4K03_08045 PF00970 Oxidoreductase FAD-binding domain E4K03_08045 PF00175 Oxidoreductase NAD-binding domain E4K03_08050 PF18389 TrmO C-terminal domain E4K03_08050 PF01980 tRNA-methyltransferase O E4K03_08060 PF00437 Type II/IV secretion system protein E4K03_08070 PF00486 Transcriptional regulatory protein, C terminal E4K03_08070 PF00072 Response regulator receiver domain E4K03_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_08075 PF08521 Two-component sensor kinase N-terminal E4K03_08075 PF00512 His Kinase A (phospho-acceptor) domain E4K03_08085 PF00293 NUDIX domain E4K03_08095 PF00912 Transglycosylase E4K03_08095 PF00905 Penicillin binding protein transpeptidase domain E4K03_08095 PF14814 Bifunctional transglycosylase second domain E4K03_08100 PF01513 ATP-NAD kinase E4K03_08105 PF07023 Protein of unknown function (DUF1315) E4K03_08110 PF02885 Glycosyl transferase family, helical bundle domain E4K03_08110 PF00591 Glycosyl transferase family, a/b domain E4K03_08120 PF00375 Sodium:dicarboxylate symporter family E4K03_08125 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_08125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_08125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_08135 PF01817 Chorismate mutase type II E4K03_08135 PF00800 Prephenate dehydratase E4K03_08135 PF01842 ACT domain E4K03_08140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4K03_08150 PF07687 Peptidase dimerisation domain E4K03_08150 PF01546 Peptidase family M20/M25/M40 E4K03_08155 PF00753 Metallo-beta-lactamase superfamily E4K03_08165 PF03883 Peroxide stress protein YaaA E4K03_08175 PF05690 Thiazole biosynthesis protein ThiG E4K03_08185 PF04241 Protein of unknown function (DUF423) E4K03_08190 PF04545 Sigma-70, region 4 E4K03_08190 PF00140 Sigma-70 factor, region 1.2 E4K03_08190 PF04542 Sigma-70 region 2 E4K03_08200 PF00313 'Cold-shock' DNA-binding domain E4K03_08205 PF00270 DEAD/DEAH box helicase E4K03_08205 PF00271 Helicase conserved C-terminal domain E4K03_08215 PF00881 Nitroreductase family E4K03_08220 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E4K03_08220 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E4K03_08240 PF01180 Dihydroorotate dehydrogenase E4K03_08245 PF02674 Colicin V production protein E4K03_08250 PF00156 Phosphoribosyl transferase domain E4K03_08265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4K03_08265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4K03_08270 PF01435 Peptidase family M48 E4K03_08275 PF09424 Yqey-like protein E4K03_08280 PF01165 Ribosomal protein S21 E4K03_08285 PF00814 Glycoprotease family E4K03_08305 PF00069 Protein kinase domain E4K03_08330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_08330 PF03466 LysR substrate binding domain E4K03_08335 PF00202 Aminotransferase class-III E4K03_08340 PF00171 Aldehyde dehydrogenase family E4K03_08345 PF00324 Amino acid permease E4K03_08375 PF04076 Bacterial OB fold (BOF) protein E4K03_08395 PF13737 Transposase DDE domain E4K03_08415 PF00561 alpha/beta hydrolase fold E4K03_08420 PF03616 Sodium/glutamate symporter E4K03_08430 PF07729 FCD domain E4K03_08430 PF00392 Bacterial regulatory proteins, gntR family E4K03_08480 PF00083 Sugar (and other) transporter E4K03_08480 PF08946 Osmosensory transporter coiled coil E4K03_08505 PF04403 Paraquat-inducible protein A E4K03_08510 PF02470 MlaD protein E4K03_08525 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_08525 PF00085 Thioredoxin E4K03_08530 PF01177 Asp/Glu/Hydantoin racemase E4K03_08535 PF00892 EamA-like transporter family E4K03_08540 PF07995 Glucose / Sorbosone dehydrogenase E4K03_08560 PF00375 Sodium:dicarboxylate symporter family E4K03_08570 PF00753 Metallo-beta-lactamase superfamily E4K03_08570 PF16123 Hydroxyacylglutathione hydrolase C-terminus E4K03_08575 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_08580 PF09383 NIL domain E4K03_08580 PF00005 ABC transporter E4K03_08585 PF03180 NLPA lipoprotein E4K03_08590 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E4K03_08590 PF02843 Phosphoribosylglycinamide synthetase, C domain E4K03_08590 PF02844 Phosphoribosylglycinamide synthetase, N domain E4K03_08595 PF02142 MGS-like domain E4K03_08595 PF01808 AICARFT/IMPCHase bienzyme E4K03_08600 PF02954 Bacterial regulatory protein, Fis family E4K03_08620 PF13932 GidA associated domain E4K03_08620 PF01134 Glucose inhibited division protein A E4K03_08640 PF01841 Transglutaminase-like superfamily E4K03_08640 PF08379 Bacterial transglutaminase-like N-terminal region E4K03_08650 PF00842 Alanine racemase, C-terminal domain E4K03_08650 PF01168 Alanine racemase, N-terminal domain E4K03_08655 PF00772 DnaB-like helicase N terminal domain E4K03_08655 PF03796 DnaB-like helicase C terminal domain E4K03_08660 PF01281 Ribosomal protein L9, N-terminal domain E4K03_08660 PF03948 Ribosomal protein L9, C-terminal domain E4K03_08665 PF01084 Ribosomal protein S18 E4K03_08670 PF01250 Ribosomal protein S6 E4K03_08675 PF01040 UbiA prenyltransferase family E4K03_08680 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E4K03_08685 PF00510 Cytochrome c oxidase subunit III E4K03_08690 PF00115 Cytochrome C and Quinol oxidase polypeptide I E4K03_08695 PF06481 COX Aromatic Rich Motif E4K03_08695 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E4K03_08705 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E4K03_08705 PF02896 PEP-utilising enzyme, TIM barrel domain E4K03_08705 PF00391 PEP-utilising enzyme, mobile domain E4K03_08710 PF03618 Kinase/pyrophosphorylase E4K03_08720 PF01522 Polysaccharide deacetylase E4K03_08720 PF14883 Hypothetical glycosyl hydrolase family 13 E4K03_08725 PF00535 Glycosyl transferase family 2 E4K03_08730 PF13994 PgaD-like protein E4K03_08740 PF00296 Luciferase-like monooxygenase E4K03_08760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_08760 PF03466 LysR substrate binding domain E4K03_08770 PF00472 RF-1 domain E4K03_08770 PF03462 PCRF domain E4K03_08775 PF17827 PrmC N-terminal domain E4K03_08775 PF13847 Methyltransferase domain E4K03_08780 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_08785 PF09084 NMT1/THI5 like E4K03_08790 PF12833 Helix-turn-helix domain E4K03_08795 PF00106 short chain dehydrogenase E4K03_08800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_08800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_08800 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_08805 PF00501 AMP-binding enzyme E4K03_08805 PF13193 AMP-binding enzyme C-terminal domain E4K03_08810 PF01613 Flavin reductase like domain E4K03_08815 PF00899 ThiF family E4K03_08820 PF03109 ABC1 family E4K03_08835 PF03814 Potassium-transporting ATPase A subunit E4K03_08845 PF02669 K+-transporting ATPase, c chain E4K03_08850 PF02702 Osmosensitive K+ channel His kinase sensor domain E4K03_08850 PF00512 His Kinase A (phospho-acceptor) domain E4K03_08850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_08850 PF13493 Domain of unknown function (DUF4118) E4K03_08855 PF00486 Transcriptional regulatory protein, C terminal E4K03_08855 PF00072 Response regulator receiver domain E4K03_08860 PF00120 Glutamine synthetase, catalytic domain E4K03_08870 PF03232 Ubiquinone biosynthesis protein COQ7 E4K03_08875 PF07690 Major Facilitator Superfamily E4K03_08880 PF01103 Surface antigen E4K03_08880 PF07244 Surface antigen variable number repeat E4K03_08880 PF17243 POTRA domain TamA domain 1 E4K03_08900 PF06434 Aconitate hydratase 2 N-terminus E4K03_08900 PF11791 Aconitate B N-terminal domain E4K03_08900 PF00330 Aconitase family (aconitate hydratase) E4K03_08910 PF00520 Ion transport protein E4K03_08910 PF00027 Cyclic nucleotide-binding domain E4K03_08915 PF07690 Major Facilitator Superfamily E4K03_08930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_08930 PF03466 LysR substrate binding domain E4K03_08935 PF04284 Protein of unknown function (DUF441) E4K03_08945 PF00849 RNA pseudouridylate synthase E4K03_08945 PF01479 S4 domain E4K03_08960 PF00849 RNA pseudouridylate synthase E4K03_08960 PF01479 S4 domain E4K03_08965 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E4K03_08970 PF08676 MutL C terminal dimerisation domain E4K03_08970 PF01119 DNA mismatch repair protein, C-terminal domain E4K03_08980 PF17209 Hfq protein E4K03_08990 PF00881 Nitroreductase family E4K03_09000 PF00149 Calcineurin-like phosphoesterase E4K03_09005 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E4K03_09010 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E4K03_09010 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4K03_09015 PF00117 Glutamine amidotransferase class-I E4K03_09015 PF00958 GMP synthase C terminal domain E4K03_09015 PF02540 NAD synthase E4K03_09020 PF05985 Ethanolamine ammonia-lyase light chain (EutC) E4K03_09025 PF06751 Ethanolamine ammonia lyase large subunit (EutB) E4K03_09030 PF13520 Amino acid permease E4K03_09035 PF00171 Aldehyde dehydrogenase family E4K03_09050 PF00465 Iron-containing alcohol dehydrogenase E4K03_09055 PF14493 Helix-turn-helix domain E4K03_09055 PF05970 PIF1-like helicase E4K03_09065 PF12833 Helix-turn-helix domain E4K03_09065 PF06445 GyrI-like small molecule binding domain E4K03_09070 PF02110 Hydroxyethylthiazole kinase family E4K03_09085 PF11940 Domain of unknown function (DUF3458) Ig-like fold E4K03_09085 PF17432 Domain of unknown function (DUF3458_C) ARM repeats E4K03_09085 PF01433 Peptidase family M1 domain E4K03_09095 PF13737 Transposase DDE domain E4K03_09110 PF13954 PapC N-terminal domain E4K03_09110 PF13953 PapC C-terminal domain E4K03_09110 PF00577 Outer membrane usher protein E4K03_09135 PF01817 Chorismate mutase type II E4K03_09140 PF01037 Lrp/AsnC ligand binding domain E4K03_09155 PF00440 Bacterial regulatory proteins, tetR family E4K03_09160 PF00593 TonB dependent receptor E4K03_09160 PF07715 TonB-dependent Receptor Plug Domain E4K03_09165 PF00924 Mechanosensitive ion channel E4K03_09195 PF07715 TonB-dependent Receptor Plug Domain E4K03_09195 PF00593 TonB dependent receptor E4K03_09230 PF00582 Universal stress protein family E4K03_09245 PF00689 Cation transporting ATPase, C-terminus E4K03_09245 PF00690 Cation transporter/ATPase, N-terminus E4K03_09250 PF02308 MgtC family E4K03_09255 PF03594 Benzoate membrane transport protein E4K03_09260 PF01037 Lrp/AsnC ligand binding domain E4K03_09265 PF01810 LysE type translocator E4K03_09275 PF03466 LysR substrate binding domain E4K03_09275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_09285 PF00108 Thiolase, N-terminal domain E4K03_09285 PF02803 Thiolase, C-terminal domain E4K03_09310 PF07690 Major Facilitator Superfamily E4K03_09315 PF12169 DNA polymerase III subunits gamma and tau domain III E4K03_09315 PF12170 DNA polymerase III tau subunit V interacting with alpha E4K03_09315 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E4K03_09320 PF04185 Phosphoesterase family E4K03_09320 PF05506 Domain of unknown function (DUF756) E4K03_09325 PF03061 Thioesterase superfamily E4K03_09330 PF00465 Iron-containing alcohol dehydrogenase E4K03_09340 PF01451 Low molecular weight phosphotyrosine protein phosphatase E4K03_09345 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E4K03_09345 PF01565 FAD binding domain E4K03_09360 PF01645 Conserved region in glutamate synthase E4K03_09460 PF00145 C-5 cytosine-specific DNA methylase E4K03_09510 PF13737 Transposase DDE domain E4K03_09640 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system E4K03_09725 PF08019 Phosphoethanolamine transferase EptA/EptB E4K03_09725 PF00884 Sulfatase E4K03_09730 PF12832 MFS_1 like family E4K03_09740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K03_09740 PF00289 Biotin carboxylase, N-terminal domain E4K03_09740 PF02785 Biotin carboxylase C-terminal domain E4K03_09745 PF00364 Biotin-requiring enzyme E4K03_09750 PF01220 Dehydroquinase class II E4K03_09755 PF11799 impB/mucB/samB family C-terminal domain E4K03_09755 PF00817 impB/mucB/samB family E4K03_09755 PF13438 Domain of unknown function (DUF4113) E4K03_09765 PF00005 ABC transporter E4K03_09770 PF00072 Response regulator receiver domain E4K03_09770 PF00486 Transcriptional regulatory protein, C terminal E4K03_09780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4K03_09780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4K03_09780 PF18267 Rubredoxin NAD+ reductase C-terminal domain E4K03_09780 PF04324 BFD-like [2Fe-2S] binding domain E4K03_09780 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_09780 PF13806 Rieske-like [2Fe-2S] domain E4K03_09785 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4K03_09785 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_09785 PF04324 BFD-like [2Fe-2S] binding domain E4K03_09785 PF18267 Rubredoxin NAD+ reductase C-terminal domain E4K03_09785 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4K03_09790 PF04324 BFD-like [2Fe-2S] binding domain E4K03_09790 PF01568 Molydopterin dinucleotide binding domain E4K03_09790 PF00384 Molybdopterin oxidoreductase E4K03_09790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4K03_09795 PF12804 MobA-like NTP transferase domain E4K03_09800 PF01568 Molydopterin dinucleotide binding domain E4K03_09800 PF00384 Molybdopterin oxidoreductase E4K03_09800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4K03_09805 PF06463 Molybdenum Cofactor Synthesis C E4K03_09805 PF04055 Radical SAM superfamily E4K03_09815 PF02391 MoaE protein E4K03_09820 PF01967 MoaC family E4K03_09820 PF00994 Probable molybdopterin binding domain E4K03_09825 PF03453 MoeA N-terminal region (domain I and II) E4K03_09825 PF03454 MoeA C-terminal region (domain IV) E4K03_09825 PF00994 Probable molybdopterin binding domain E4K03_09830 PF01638 HxlR-like helix-turn-helix E4K03_09835 PF00155 Aminotransferase class I and II E4K03_09835 PF00392 Bacterial regulatory proteins, gntR family E4K03_09840 PF00892 EamA-like transporter family E4K03_09860 PF02635 DsrE/DsrF-like family E4K03_09865 PF16363 GDP-mannose 4,6 dehydratase E4K03_09870 PF00206 Lyase E4K03_09870 PF10415 Fumarase C C-terminus E4K03_09895 PF01266 FAD dependent oxidoreductase E4K03_09905 PF02542 YgbB family E4K03_09915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4K03_09915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4K03_09920 PF00440 Bacterial regulatory proteins, tetR family E4K03_09925 PF00158 Sigma-54 interaction domain E4K03_09925 PF02954 Bacterial regulatory protein, Fis family E4K03_09925 PF00072 Response regulator receiver domain E4K03_09930 PF00989 PAS fold E4K03_09930 PF00512 His Kinase A (phospho-acceptor) domain E4K03_09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_09940 PF04055 Radical SAM superfamily E4K03_09940 PF18693 TRAM domain E4K03_09940 PF00919 Uncharacterized protein family UPF0004 E4K03_09945 PF00696 Amino acid kinase family E4K03_09950 PF01765 Ribosome recycling factor E4K03_09955 PF01255 Putative undecaprenyl diphosphate synthase E4K03_09965 PF13288 DXP reductoisomerase C-terminal domain E4K03_09965 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E4K03_09965 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E4K03_09970 PF02163 Peptidase family M50 E4K03_09970 PF17820 PDZ domain E4K03_09970 PF13180 PDZ domain E4K03_09975 PF01103 Surface antigen E4K03_09975 PF07244 Surface antigen variable number repeat E4K03_09985 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_09985 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E4K03_09990 PF07977 FabA-like domain E4K03_09995 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E4K03_09995 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_10010 PF02631 RecX family E4K03_10015 PF00154 recA bacterial DNA recombination protein E4K03_10020 PF01479 S4 domain E4K03_10025 PF13419 Haloacid dehalogenase-like hydrolase E4K03_10035 PF13737 Transposase DDE domain E4K03_10055 PF01037 Lrp/AsnC ligand binding domain E4K03_10060 PF00266 Aminotransferase class-V E4K03_10065 PF00324 Amino acid permease E4K03_10075 PF00082 Subtilase family E4K03_10075 PF05922 Peptidase inhibitor I9 E4K03_10080 PF00916 Sulfate permease family E4K03_10080 PF01740 STAS domain E4K03_10085 PF02586 SOS response associated peptidase (SRAP) E4K03_10095 PF07995 Glucose / Sorbosone dehydrogenase E4K03_10105 PF00563 EAL domain E4K03_10105 PF00990 Diguanylate cyclase, GGDEF domain E4K03_10105 PF03707 Bacterial signalling protein N terminal repeat E4K03_10125 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4K03_10125 PF02378 Phosphotransferase system, EIIC E4K03_10130 PF00294 pfkB family carbohydrate kinase E4K03_10160 PF05525 Branched-chain amino acid transport protein E4K03_10165 PF00557 Metallopeptidase family M24 E4K03_10170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_10170 PF03466 LysR substrate binding domain E4K03_10180 PF00462 Glutaredoxin E4K03_10185 PF00202 Aminotransferase class-III E4K03_10190 PF00478 IMP dehydrogenase / GMP reductase domain E4K03_10190 PF00571 CBS domain E4K03_10220 PF02881 SRP54-type protein, helical bundle domain E4K03_10220 PF00448 SRP54-type protein, GTPase domain E4K03_10230 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) E4K03_10245 PF08173 Membrane bound YbgT-like protein E4K03_10250 PF02322 Cytochrome bd terminal oxidase subunit II E4K03_10255 PF01654 Cytochrome bd terminal oxidase subunit I E4K03_10265 PF07290 Protein of unknown function (DUF1449) E4K03_10275 PF00294 pfkB family carbohydrate kinase E4K03_10280 PF07715 TonB-dependent Receptor Plug Domain E4K03_10280 PF00593 TonB dependent receptor E4K03_10285 PF00675 Insulinase (Peptidase family M16) E4K03_10285 PF08367 Peptidase M16C associated E4K03_10285 PF05193 Peptidase M16 inactive domain E4K03_10290 PF02253 Phospholipase A1 E4K03_10295 PF02386 Cation transport protein E4K03_10300 PF02254 TrkA-N domain E4K03_10300 PF02080 TrkA-C domain E4K03_10305 PF00585 C-terminal regulatory domain of Threonine dehydratase E4K03_10305 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_10310 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E4K03_10335 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4K03_10335 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4K03_10345 PF02617 ATP-dependent Clp protease adaptor protein ClpS E4K03_10350 PF02861 Clp amino terminal domain, pathogenicity island component E4K03_10350 PF17871 AAA lid domain E4K03_10350 PF07724 AAA domain (Cdc48 subfamily) E4K03_10350 PF10431 C-terminal, D2-small domain, of ClpB protein E4K03_10350 PF00004 ATPase family associated with various cellular activities (AAA) E4K03_10355 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E4K03_10360 PF00793 DAHP synthetase I family E4K03_10375 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_10375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4K03_10405 PF06418 CTP synthase N-terminus E4K03_10405 PF00117 Glutamine amidotransferase class-I E4K03_10410 PF00793 DAHP synthetase I family E4K03_10415 PF00113 Enolase, C-terminal TIM barrel domain E4K03_10415 PF03952 Enolase, N-terminal domain E4K03_10420 PF04239 Protein of unknown function (DUF421) E4K03_10425 PF04977 Septum formation initiator E4K03_10430 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E4K03_10435 PF01144 Coenzyme A transferase E4K03_10440 PF01144 Coenzyme A transferase E4K03_10445 PF00108 Thiolase, N-terminal domain E4K03_10445 PF02803 Thiolase, C-terminal domain E4K03_10450 PF10397 Adenylosuccinate lyase C-terminus E4K03_10450 PF00206 Lyase E4K03_10455 PF00561 alpha/beta hydrolase fold E4K03_10460 PF07690 Major Facilitator Superfamily E4K03_10465 PF02627 Carboxymuconolactone decarboxylase family E4K03_10470 PF00775 Dioxygenase E4K03_10470 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal E4K03_10475 PF00775 Dioxygenase E4K03_10480 PF01487 Type I 3-dehydroquinase E4K03_10485 PF05048 Periplasmic copper-binding protein (NosD) E4K03_10490 PF04966 Carbohydrate-selective porin, OprB family E4K03_10495 PF01011 PQQ enzyme repeat E4K03_10495 PF13360 PQQ-like domain E4K03_10505 PF04143 Sulphur transport E4K03_10515 PF00753 Metallo-beta-lactamase superfamily E4K03_10520 PF09339 IclR helix-turn-helix domain E4K03_10520 PF01614 Bacterial transcriptional regulator E4K03_10525 PF03466 LysR substrate binding domain E4K03_10525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_10530 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_10530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_10530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_10545 PF00106 short chain dehydrogenase E4K03_10555 PF07690 Major Facilitator Superfamily E4K03_10565 PF01425 Amidase E4K03_10570 PF08028 Acyl-CoA dehydrogenase, C-terminal domain E4K03_10585 PF00355 Rieske [2Fe-2S] domain E4K03_10585 PF00848 Ring hydroxylating alpha subunit (catalytic domain) E4K03_10600 PF00175 Oxidoreductase NAD-binding domain E4K03_10600 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_10605 PF01613 Flavin reductase like domain E4K03_10610 PF02311 AraC-like ligand binding domain E4K03_10610 PF12833 Helix-turn-helix domain E4K03_10615 PF02728 Copper amine oxidase, N3 domain E4K03_10615 PF02727 Copper amine oxidase, N2 domain E4K03_10615 PF07833 Copper amine oxidase N-terminal domain E4K03_10615 PF01179 Copper amine oxidase, enzyme domain E4K03_10625 PF00171 Aldehyde dehydrogenase family E4K03_10630 PF12146 Serine aminopeptidase, S33 E4K03_10635 PF02803 Thiolase, C-terminal domain E4K03_10635 PF00108 Thiolase, N-terminal domain E4K03_10640 PF01144 Coenzyme A transferase E4K03_10645 PF01144 Coenzyme A transferase E4K03_10650 PF04444 Catechol dioxygenase N terminus E4K03_10650 PF00775 Dioxygenase E4K03_10655 PF02426 Muconolactone delta-isomerase E4K03_10660 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E4K03_10660 PF13378 Enolase C-terminal domain-like E4K03_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_10665 PF03466 LysR substrate binding domain E4K03_10675 PF00392 Bacterial regulatory proteins, gntR family E4K03_10675 PF07729 FCD domain E4K03_10680 PF00920 Dehydratase family E4K03_10685 PF07690 Major Facilitator Superfamily E4K03_10695 PF00171 Aldehyde dehydrogenase family E4K03_10705 PF00561 alpha/beta hydrolase fold E4K03_10710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4K03_10710 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_10725 PF13411 MerR HTH family regulatory protein E4K03_10735 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_10745 PF12706 Beta-lactamase superfamily domain E4K03_10750 PF00440 Bacterial regulatory proteins, tetR family E4K03_10750 PF08359 YsiA-like protein, C-terminal region E4K03_10755 PF03466 LysR substrate binding domain E4K03_10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_10790 PF01575 MaoC like domain E4K03_10795 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_10795 PF12806 Acetyl-CoA dehydrogenase C-terminal like E4K03_10795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_10795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_10825 PF01975 Survival protein SurE E4K03_10835 PF13291 ACT domain E4K03_10835 PF04607 Region found in RelA / SpoT proteins E4K03_10835 PF02824 TGS domain E4K03_10865 PF13737 Transposase DDE domain E4K03_10875 PF12146 Serine aminopeptidase, S33 E4K03_10880 PF03466 LysR substrate binding domain E4K03_10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_10890 PF12146 Serine aminopeptidase, S33 E4K03_10895 PF02311 AraC-like ligand binding domain E4K03_10895 PF12833 Helix-turn-helix domain E4K03_10905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_10905 PF00512 His Kinase A (phospho-acceptor) domain E4K03_10905 PF00672 HAMP domain E4K03_10905 PF16527 Two-component sensor protein CpxA, periplasmic domain E4K03_10910 PF00072 Response regulator receiver domain E4K03_10910 PF00486 Transcriptional regulatory protein, C terminal E4K03_10915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4K03_10915 PF00529 HlyD membrane-fusion protein of T1SS E4K03_10920 PF00873 AcrB/AcrD/AcrF family E4K03_10925 PF17755 UvrA DNA-binding domain E4K03_10925 PF00005 ABC transporter E4K03_10925 PF17760 UvrA interaction domain E4K03_10945 PF16970 Type-1 fimbrial protein, A E4K03_10950 PF02753 Pili assembly chaperone PapD, C-terminal domain E4K03_10950 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E4K03_10955 PF13954 PapC N-terminal domain E4K03_10955 PF00577 Outer membrane usher protein E4K03_10955 PF13953 PapC C-terminal domain E4K03_10960 PF00419 Fimbrial protein E4K03_10970 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_10970 PF00107 Zinc-binding dehydrogenase E4K03_10980 PF00199 Catalase E4K03_10995 PF13091 PLD-like domain E4K03_11015 PF01244 Membrane dipeptidase (Peptidase family M19) E4K03_11020 PF04055 Radical SAM superfamily E4K03_11020 PF13186 Iron-sulfur cluster-binding domain E4K03_11025 PF05402 Coenzyme PQQ synthesis protein D (PqqD) E4K03_11030 PF03070 TENA/THI-4/PQQC family E4K03_11035 PF12706 Beta-lactamase superfamily domain E4K03_11040 PF08042 PqqA family E4K03_11045 PF02503 Polyphosphate kinase middle domain E4K03_11045 PF13089 Polyphosphate kinase N-terminal domain E4K03_11045 PF17941 Polyphosphate kinase C-terminal domain 1 E4K03_11045 PF13090 Polyphosphate kinase C-terminal domain 2 E4K03_11050 PF00149 Calcineurin-like phosphoesterase E4K03_11060 PF00857 Isochorismatase family E4K03_11060 PF00550 Phosphopantetheine attachment site E4K03_11065 PF00106 short chain dehydrogenase E4K03_11070 PF00005 ABC transporter E4K03_11070 PF03459 TOBE domain E4K03_11075 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_11085 PF03459 TOBE domain E4K03_11085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_11090 PF00355 Rieske [2Fe-2S] domain E4K03_11090 PF00848 Ring hydroxylating alpha subunit (catalytic domain) E4K03_11095 PF00866 Ring hydroxylating beta subunit E4K03_11100 PF00970 Oxidoreductase FAD-binding domain E4K03_11100 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_11100 PF00175 Oxidoreductase NAD-binding domain E4K03_11105 PF14525 AraC-binding-like domain E4K03_11105 PF12833 Helix-turn-helix domain E4K03_11115 PF01613 Flavin reductase like domain E4K03_11130 PF01738 Dienelactone hydrolase family E4K03_11135 PF07690 Major Facilitator Superfamily E4K03_11140 PF06719 AraC-type transcriptional regulator N-terminus E4K03_11140 PF12833 Helix-turn-helix domain E4K03_11165 PF03466 LysR substrate binding domain E4K03_11165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_11170 PF01144 Coenzyme A transferase E4K03_11175 PF01144 Coenzyme A transferase E4K03_11180 PF02667 Short chain fatty acid transporter E4K03_11185 PF02803 Thiolase, C-terminal domain E4K03_11185 PF00108 Thiolase, N-terminal domain E4K03_11190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_11190 PF03466 LysR substrate binding domain E4K03_11200 PF03466 LysR substrate binding domain E4K03_11200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_11215 PF00206 Lyase E4K03_11215 PF10415 Fumarase C C-terminus E4K03_11220 PF07715 TonB-dependent Receptor Plug Domain E4K03_11220 PF00593 TonB dependent receptor E4K03_11225 PF00083 Sugar (and other) transporter E4K03_11240 PF00005 ABC transporter E4K03_11245 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_11250 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E4K03_11270 PF02417 Chromate transporter E4K03_11275 PF02525 Flavodoxin-like fold E4K03_11280 PF01638 HxlR-like helix-turn-helix E4K03_11285 PF12833 Helix-turn-helix domain E4K03_11285 PF06445 GyrI-like small molecule binding domain E4K03_11300 PF01925 Sulfite exporter TauE/SafE E4K03_11305 PF00753 Metallo-beta-lactamase superfamily E4K03_11305 PF04273 Putative phosphatase (DUF442) E4K03_11310 PF00753 Metallo-beta-lactamase superfamily E4K03_11310 PF04273 Putative phosphatase (DUF442) E4K03_11315 PF00158 Sigma-54 interaction domain E4K03_11315 PF00072 Response regulator receiver domain E4K03_11315 PF02954 Bacterial regulatory protein, Fis family E4K03_11320 PF01062 Bestrophin, RFP-TM, chloride channel E4K03_11325 PF00107 Zinc-binding dehydrogenase E4K03_11325 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_11330 PF00106 short chain dehydrogenase E4K03_11335 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_11335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4K03_11340 PF02817 e3 binding domain E4K03_11340 PF00364 Biotin-requiring enzyme E4K03_11340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4K03_11345 PF02779 Transketolase, pyrimidine binding domain E4K03_11345 PF02780 Transketolase, C-terminal domain E4K03_11350 PF00676 Dehydrogenase E1 component E4K03_11355 PF04055 Radical SAM superfamily E4K03_11370 PF00990 Diguanylate cyclase, GGDEF domain E4K03_11370 PF08448 PAS fold E4K03_11375 PF01264 Chorismate synthase E4K03_11380 PF05175 Methyltransferase small domain E4K03_11385 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_11395 PF00004 ATPase family associated with various cellular activities (AAA) E4K03_11395 PF17862 AAA+ lid domain E4K03_11395 PF01434 Peptidase family M41 E4K03_11405 PF05166 YcgL domain E4K03_11425 PF01612 3'-5' exonuclease E4K03_11425 PF00570 HRDC domain E4K03_11430 PF02132 RecR protein E4K03_11430 PF13662 Toprim domain E4K03_11435 PF02575 YbaB/EbfC DNA-binding family E4K03_11445 PF01053 Cys/Met metabolism PLP-dependent enzyme E4K03_11450 PF00561 alpha/beta hydrolase fold E4K03_11455 PF08241 Methyltransferase domain E4K03_11490 PF01230 HIT domain E4K03_11525 PF00005 ABC transporter E4K03_11530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4K03_11540 PF02684 Lipid-A-disaccharide synthetase E4K03_11555 PF00593 TonB dependent receptor E4K03_11555 PF07715 TonB-dependent Receptor Plug Domain E4K03_11575 PF01925 Sulfite exporter TauE/SafE E4K03_11580 PF00793 DAHP synthetase I family E4K03_11585 PF02654 Cobalamin-5-phosphate synthase E4K03_11600 PF02277 Phosphoribosyltransferase E4K03_11605 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase E4K03_11645 PF07715 TonB-dependent Receptor Plug Domain E4K03_11645 PF00593 TonB dependent receptor E4K03_11650 PF03737 Aldolase/RraA E4K03_11660 PF06276 Ferric iron reductase FhuF-like transporter E4K03_11660 PF04183 IucA / IucC family E4K03_11665 PF06276 Ferric iron reductase FhuF-like transporter E4K03_11665 PF04183 IucA / IucC family E4K03_11670 PF07690 Major Facilitator Superfamily E4K03_11675 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) E4K03_11680 PF06276 Ferric iron reductase FhuF-like transporter E4K03_11680 PF04183 IucA / IucC family E4K03_11685 PF04073 Aminoacyl-tRNA editing domain E4K03_11695 PF03109 ABC1 family E4K03_11700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_11700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_11700 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_11705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_11705 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_11705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_11710 PF00487 Fatty acid desaturase E4K03_11715 PF12852 Cupin E4K03_11715 PF12833 Helix-turn-helix domain E4K03_11720 PF09312 SurA N-terminal domain E4K03_11720 PF00639 PPIC-type PPIASE domain E4K03_11725 PF00216 Bacterial DNA-binding protein E4K03_11740 PF02082 Transcriptional regulator E4K03_11745 PF00266 Aminotransferase class-V E4K03_11750 PF01592 NifU-like N terminal domain E4K03_11755 PF01521 Iron-sulphur cluster biosynthesis E4K03_11760 PF00226 DnaJ domain E4K03_11760 PF07743 HSCB C-terminal oligomerisation domain E4K03_11765 PF00012 Hsp70 protein E4K03_11770 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_11775 PF00211 Adenylate and Guanylate cyclase catalytic domain E4K03_11785 PF00271 Helicase conserved C-terminal domain E4K03_11785 PF02559 CarD-like/TRCF domain E4K03_11785 PF00270 DEAD/DEAH box helicase E4K03_11785 PF03461 TRCF domain E4K03_11785 PF17757 UvrB interaction domain E4K03_11805 PF03737 Aldolase/RraA E4K03_11810 PF13460 NAD(P)H-binding E4K03_11815 PF01649 Ribosomal protein S20 E4K03_11825 PF00459 Inositol monophosphatase family E4K03_11840 PF00005 ABC transporter E4K03_11840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4K03_11845 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_11850 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_11855 PF01432 Peptidase family M3 E4K03_11870 PF00593 TonB dependent receptor E4K03_11870 PF07715 TonB-dependent Receptor Plug Domain E4K03_11875 PF03544 Gram-negative bacterial TonB protein C-terminal E4K03_11880 PF01618 MotA/TolQ/ExbB proton channel family E4K03_11885 PF02472 Biopolymer transport protein ExbD/TolR E4K03_11890 PF02472 Biopolymer transport protein ExbD/TolR E4K03_11900 PF01274 Malate synthase E4K03_11905 PF03969 AFG1-like ATPase E4K03_11915 PF00743 Flavin-binding monooxygenase-like E4K03_11925 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E4K03_11935 PF00216 Bacterial DNA-binding protein E4K03_11940 PF00575 S1 RNA binding domain E4K03_11945 PF02224 Cytidylate kinase E4K03_11955 PF14437 MafB19-like deaminase E4K03_11965 PF03167 Uracil DNA glycosylase superfamily E4K03_11975 PF03934 Type II secretion system (T2SS), protein K E4K03_11980 PF07963 Prokaryotic N-terminal methylation motif E4K03_11980 PF11612 Type II secretion system (T2SS), protein J E4K03_11985 PF07963 Prokaryotic N-terminal methylation motif E4K03_11985 PF02501 Type II secretion system (T2SS), protein I E4K03_12000 PF01026 TatD related DNase E4K03_12010 PF09115 DNA polymerase III, delta subunit, C terminal E4K03_12015 PF02348 Cytidylyltransferase E4K03_12020 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E4K03_12025 PF00005 ABC transporter E4K03_12025 PF00664 ABC transporter transmembrane region E4K03_12035 PF01618 MotA/TolQ/ExbB proton channel family E4K03_12040 PF02195 ParB-like nuclease domain E4K03_12040 PF17762 HTH domain found in ParB protein E4K03_12045 PF13614 AAA domain E4K03_12050 PF02527 rRNA small subunit methyltransferase G E4K03_12055 PF00483 Nucleotidyl transferase E4K03_12060 PF01636 Phosphotransferase enzyme family E4K03_12065 PF04453 LPS transport system D E4K03_12065 PF03968 OstA-like protein E4K03_12070 PF09312 SurA N-terminal domain E4K03_12070 PF00639 PPIC-type PPIASE domain E4K03_12075 PF01116 Fructose-bisphosphate aldolase class-II E4K03_12085 PF00162 Phosphoglycerate kinase E4K03_12095 PF02545 Maf-like protein E4K03_12100 PF08007 Cupin superfamily protein E4K03_12120 PF00375 Sodium:dicarboxylate symporter family E4K03_12125 PF06912 Protein of unknown function (DUF1275) E4K03_12130 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) E4K03_12135 PF00664 ABC transporter transmembrane region E4K03_12135 PF00005 ABC transporter E4K03_12145 PF12833 Helix-turn-helix domain E4K03_12145 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term E4K03_12150 PF01597 Glycine cleavage H-protein E4K03_12155 PF02146 Sir2 family E4K03_12160 PF00474 Sodium:solute symporter family E4K03_12165 PF01037 Lrp/AsnC ligand binding domain E4K03_12170 PF00171 Aldehyde dehydrogenase family E4K03_12170 PF01619 Proline dehydrogenase E4K03_12170 PF14850 DNA-binding domain of Proline dehydrogenase E4K03_12170 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E4K03_12175 PF04229 GrpB protein E4K03_12180 PF05958 tRNA (Uracil-5-)-methyltransferase E4K03_12190 PF09992 Phosphodiester glycosidase E4K03_12200 PF04264 YceI-like domain E4K03_12210 PF02779 Transketolase, pyrimidine binding domain E4K03_12210 PF02780 Transketolase, C-terminal domain E4K03_12210 PF00456 Transketolase, thiamine diphosphate binding domain E4K03_12215 PF02773 S-adenosylmethionine synthetase, C-terminal domain E4K03_12215 PF02772 S-adenosylmethionine synthetase, central domain E4K03_12215 PF00438 S-adenosylmethionine synthetase, N-terminal domain E4K03_12235 PF00905 Penicillin binding protein transpeptidase domain E4K03_12250 PF02075 Crossover junction endodeoxyribonuclease RuvC E4K03_12255 PF03853 YjeF-related protein N-terminus E4K03_12255 PF01256 Carbohydrate kinase E4K03_12260 PF08331 Domain of unknown function (DUF1730) E4K03_12265 PF04055 Radical SAM superfamily E4K03_12265 PF06968 Biotin and Thiamin Synthesis associated domain E4K03_12280 PF16970 Type-1 fimbrial protein, A E4K03_12285 PF02753 Pili assembly chaperone PapD, C-terminal domain E4K03_12285 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E4K03_12325 PF00892 EamA-like transporter family E4K03_12335 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E4K03_12345 PF03466 LysR substrate binding domain E4K03_12345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_12360 PF13737 Transposase DDE domain E4K03_12395 PF00440 Bacterial regulatory proteins, tetR family E4K03_12405 PF01709 Transcriptional regulator E4K03_12410 PF01037 Lrp/AsnC ligand binding domain E4K03_12420 PF00005 ABC transporter E4K03_12425 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_12430 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_12445 PF08028 Acyl-CoA dehydrogenase, C-terminal domain E4K03_12445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_12455 PF00296 Luciferase-like monooxygenase E4K03_12460 PF03180 NLPA lipoprotein E4K03_12465 PF03180 NLPA lipoprotein E4K03_12470 PF00005 ABC transporter E4K03_12470 PF09383 NIL domain E4K03_12475 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_12480 PF01926 50S ribosome-binding GTPase E4K03_12480 PF06071 Protein of unknown function (DUF933) E4K03_12505 PF03591 AzlC protein E4K03_12510 PF05437 Branched-chain amino acid transport protein (AzlD) E4K03_12520 PF02222 ATP-grasp domain E4K03_12525 PF01909 Nucleotidyltransferase domain E4K03_12525 PF01966 HD domain E4K03_12525 PF08335 GlnD PII-uridylyltransferase E4K03_12530 PF00155 Aminotransferase class I and II E4K03_12540 PF12852 Cupin E4K03_12540 PF12833 Helix-turn-helix domain E4K03_12545 PF00255 Glutathione peroxidase E4K03_12550 PF01641 SelR domain E4K03_12555 PF00155 Aminotransferase class I and II E4K03_12560 PF00375 Sodium:dicarboxylate symporter family E4K03_12565 PF13737 Transposase DDE domain E4K03_12570 PF17763 Glutaminase/Asparaginase C-terminal domain E4K03_12570 PF00710 Asparaginase, N-terminal E4K03_12575 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E4K03_12575 PF07733 Bacterial DNA polymerase III alpha NTPase domain E4K03_12575 PF14579 Helix-hairpin-helix motif E4K03_12575 PF02811 PHP domain E4K03_12575 PF01336 OB-fold nucleic acid binding domain E4K03_12580 PF00588 SpoU rRNA Methylase family E4K03_12585 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_12605 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_12605 PF13192 Thioredoxin domain E4K03_12620 PF03466 LysR substrate binding domain E4K03_12620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_12625 PF01758 Sodium Bile acid symporter family E4K03_12630 PF01022 Bacterial regulatory protein, arsR family E4K03_12635 PF03960 ArsC family E4K03_12645 PF01979 Amidohydrolase family E4K03_12645 PF13382 Adenine deaminase C-terminal domain E4K03_12655 PF03466 LysR substrate binding domain E4K03_12655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_12665 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E4K03_12670 PF01177 Asp/Glu/Hydantoin racemase E4K03_12675 PF02668 Taurine catabolism dioxygenase TauD, TfdA family E4K03_12680 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_12685 PF00005 ABC transporter E4K03_12690 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E4K03_12700 PF00083 Sugar (and other) transporter E4K03_12705 PF00296 Luciferase-like monooxygenase E4K03_12710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_12710 PF08028 Acyl-CoA dehydrogenase, C-terminal domain E4K03_12710 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_12725 PF01654 Cytochrome bd terminal oxidase subunit I E4K03_12730 PF02322 Cytochrome bd terminal oxidase subunit II E4K03_12740 PF00392 Bacterial regulatory proteins, gntR family E4K03_12740 PF00155 Aminotransferase class I and II E4K03_12745 PF03466 LysR substrate binding domain E4K03_12745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_12760 PF00698 Acyl transferase domain E4K03_12765 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG E4K03_12775 PF01039 Carboxyl transferase domain E4K03_12780 PF06857 Malonate decarboxylase delta subunit (MdcD) E4K03_12785 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E4K03_12790 PF16957 Malonate decarboxylase, alpha subunit, transporter E4K03_12795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_12795 PF03466 LysR substrate binding domain E4K03_12805 PF07690 Major Facilitator Superfamily E4K03_12820 PF00155 Aminotransferase class I and II E4K03_12820 PF00392 Bacterial regulatory proteins, gntR family E4K03_12825 PF04172 LrgB-like family E4K03_12830 PF03788 LrgA family E4K03_12835 PF03466 LysR substrate binding domain E4K03_12835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_12840 PF02798 Glutathione S-transferase, N-terminal domain E4K03_12840 PF14834 Glutathione S-transferase, C-terminal domain E4K03_12845 PF02798 Glutathione S-transferase, N-terminal domain E4K03_12850 PF03466 LysR substrate binding domain E4K03_12850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_12860 PF00581 Rhodanese-like domain E4K03_12865 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_12875 PF00266 Aminotransferase class-V E4K03_12880 PF01810 LysE type translocator E4K03_12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_12885 PF03466 LysR substrate binding domain E4K03_12895 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4K03_12900 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4K03_12905 PF00005 ABC transporter E4K03_12910 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_12915 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_12930 PF00072 Response regulator receiver domain E4K03_12935 PF00072 Response regulator receiver domain E4K03_12935 PF09308 LuxQ, periplasmic E4K03_12935 PF00512 His Kinase A (phospho-acceptor) domain E4K03_12935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_12945 PF01037 Lrp/AsnC ligand binding domain E4K03_12945 PF13404 AsnC-type helix-turn-helix domain E4K03_12955 PF00717 Peptidase S24-like E4K03_12970 PF13737 Transposase DDE domain E4K03_12985 PF00199 Catalase E4K03_12985 PF18011 C-terminal domain found in long catalases E4K03_12985 PF06628 Catalase-related immune-responsive E4K03_12995 PF02464 Competence-damaged protein E4K03_12995 PF00994 Probable molybdopterin binding domain E4K03_12995 PF18146 Damage-inducible protein CinA KH domain E4K03_13000 PF13737 Transposase DDE domain E4K03_13010 PF13737 Transposase DDE domain E4K03_13040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_13040 PF03466 LysR substrate binding domain E4K03_13075 PF13193 AMP-binding enzyme C-terminal domain E4K03_13075 PF00501 AMP-binding enzyme E4K03_13080 PF00440 Bacterial regulatory proteins, tetR family E4K03_13085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_13085 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_13085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_13090 PF01039 Carboxyl transferase domain E4K03_13095 PF00378 Enoyl-CoA hydratase/isomerase E4K03_13100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K03_13100 PF00289 Biotin carboxylase, N-terminal domain E4K03_13100 PF00364 Biotin-requiring enzyme E4K03_13100 PF02785 Biotin carboxylase C-terminal domain E4K03_13105 PF00682 HMGL-like E4K03_13110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_13110 PF03466 LysR substrate binding domain E4K03_13125 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_13125 PF12806 Acetyl-CoA dehydrogenase C-terminal like E4K03_13125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_13125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_13135 PF07690 Major Facilitator Superfamily E4K03_13145 PF01144 Coenzyme A transferase E4K03_13150 PF01144 Coenzyme A transferase E4K03_13155 PF07690 Major Facilitator Superfamily E4K03_13160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_13160 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_13160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_13165 PF00378 Enoyl-CoA hydratase/isomerase E4K03_13175 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4K03_13175 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain E4K03_13175 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4K03_13180 PF00108 Thiolase, N-terminal domain E4K03_13180 PF02803 Thiolase, C-terminal domain E4K03_13185 PF09339 IclR helix-turn-helix domain E4K03_13190 PF07690 Major Facilitator Superfamily E4K03_13195 PF03060 Nitronate monooxygenase E4K03_13200 PF00378 Enoyl-CoA hydratase/isomerase E4K03_13205 PF09339 IclR helix-turn-helix domain E4K03_13210 PF02515 CoA-transferase family III E4K03_13215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_13215 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_13215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_13220 PF07690 Major Facilitator Superfamily E4K03_13225 PF13419 Haloacid dehalogenase-like hydrolase E4K03_13230 PF00266 Aminotransferase class-V E4K03_13235 PF01266 FAD dependent oxidoreductase E4K03_13240 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_13245 PF08402 TOBE domain E4K03_13245 PF00005 ABC transporter E4K03_13255 PF07702 UTRA domain E4K03_13255 PF00392 Bacterial regulatory proteins, gntR family E4K03_13260 PF00842 Alanine racemase, C-terminal domain E4K03_13260 PF01168 Alanine racemase, N-terminal domain E4K03_13265 PF01494 FAD binding domain E4K03_13270 PF09339 IclR helix-turn-helix domain E4K03_13270 PF01614 Bacterial transcriptional regulator E4K03_13275 PF02525 Flavodoxin-like fold E4K03_13280 PF03466 LysR substrate binding domain E4K03_13280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_13285 PF02627 Carboxymuconolactone decarboxylase family E4K03_13290 PF00171 Aldehyde dehydrogenase family E4K03_13300 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E4K03_13310 PF00171 Aldehyde dehydrogenase family E4K03_13315 PF00296 Luciferase-like monooxygenase E4K03_13320 PF01613 Flavin reductase like domain E4K03_13325 PF12697 Alpha/beta hydrolase family E4K03_13350 PF01292 Prokaryotic cytochrome b561 E4K03_13355 PF00199 Catalase E4K03_13390 PF03061 Thioesterase superfamily E4K03_13395 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_13400 PF08223 PaaX-like protein C-terminal domain E4K03_13400 PF07848 PaaX-like protein E4K03_13405 PF00501 AMP-binding enzyme E4K03_13405 PF14535 AMP-binding enzyme C-terminal domain E4K03_13410 PF00108 Thiolase, N-terminal domain E4K03_13410 PF02803 Thiolase, C-terminal domain E4K03_13415 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4K03_13415 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain E4K03_13415 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4K03_13420 PF00378 Enoyl-CoA hydratase/isomerase E4K03_13425 PF00378 Enoyl-CoA hydratase/isomerase E4K03_13430 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_13430 PF00970 Oxidoreductase FAD-binding domain E4K03_13430 PF00175 Oxidoreductase NAD-binding domain E4K03_13435 PF01883 Iron-sulfur cluster assembly protein E4K03_13440 PF05138 Phenylacetic acid catabolic protein E4K03_13445 PF06243 Phenylacetic acid degradation B E4K03_13450 PF05138 Phenylacetic acid catabolic protein E4K03_13455 PF00171 Aldehyde dehydrogenase family E4K03_13455 PF01575 MaoC like domain E4K03_13460 PF03313 Serine dehydratase alpha chain E4K03_13460 PF03315 Serine dehydratase beta chain E4K03_13465 PF13520 Amino acid permease E4K03_13470 PF00171 Aldehyde dehydrogenase family E4K03_13475 PF00083 Sugar (and other) transporter E4K03_13495 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_13495 PF04324 BFD-like [2Fe-2S] binding domain E4K03_13505 PF01266 FAD dependent oxidoreductase E4K03_13510 PF05544 Proline racemase E4K03_13515 PF00392 Bacterial regulatory proteins, gntR family E4K03_13525 PF00701 Dihydrodipicolinate synthetase family E4K03_13540 PF00376 MerR family regulatory protein E4K03_13540 PF09278 MerR, DNA binding E4K03_13550 PF02677 Epoxyqueuosine reductase QueH E4K03_13570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E4K03_13580 PF03466 LysR substrate binding domain E4K03_13580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_13590 PF13737 Transposase DDE domain E4K03_13610 PF00005 ABC transporter E4K03_13620 PF01425 Amidase E4K03_13625 PF08753 NikR C terminal nickel binding domain E4K03_13625 PF01402 Ribbon-helix-helix protein, copG family E4K03_13635 PF01638 HxlR-like helix-turn-helix E4K03_13640 PF02525 Flavodoxin-like fold E4K03_13645 PF00289 Biotin carboxylase, N-terminal domain E4K03_13645 PF02785 Biotin carboxylase C-terminal domain E4K03_13645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K03_13660 PF00107 Zinc-binding dehydrogenase E4K03_13660 PF13823 Alcohol dehydrogenase GroES-associated E4K03_13660 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_13670 PF00440 Bacterial regulatory proteins, tetR family E4K03_13685 PF00654 Voltage gated chloride channel E4K03_13690 PF00289 Biotin carboxylase, N-terminal domain E4K03_13690 PF02785 Biotin carboxylase C-terminal domain E4K03_13690 PF00364 Biotin-requiring enzyme E4K03_13690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K03_13700 PF07286 Protein of unknown function (DUF1445) E4K03_13705 PF03746 LamB/YcsF family E4K03_13710 PF01566 Natural resistance-associated macrophage protein E4K03_13715 PF03466 LysR substrate binding domain E4K03_13715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_13745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4K03_13745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4K03_13765 PF07690 Major Facilitator Superfamily E4K03_13780 PF03279 Bacterial lipid A biosynthesis acyltransferase E4K03_13785 PF00563 EAL domain E4K03_13785 PF00990 Diguanylate cyclase, GGDEF domain E4K03_13785 PF03707 Bacterial signalling protein N terminal repeat E4K03_13790 PF00892 EamA-like transporter family E4K03_13795 PF01037 Lrp/AsnC ligand binding domain E4K03_13800 PF00488 MutS domain V E4K03_13800 PF05188 MutS domain II E4K03_13800 PF05190 MutS family domain IV E4K03_13800 PF05192 MutS domain III E4K03_13800 PF01624 MutS domain I E4K03_13810 PF00037 4Fe-4S binding domain E4K03_13810 PF11953 Domain of unknown function (DUF3470) E4K03_13820 PF01596 O-methyltransferase E4K03_13830 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_13835 PF01205 Uncharacterized protein family UPF0029 E4K03_13845 PF00664 ABC transporter transmembrane region E4K03_13845 PF00005 ABC transporter E4K03_13845 PF03412 Peptidase C39 family E4K03_13850 PF02321 Outer membrane efflux protein E4K03_13855 PF12399 Branched-chain amino acid ATP-binding cassette transporter E4K03_13855 PF00005 ABC transporter E4K03_13860 PF03968 OstA-like protein E4K03_13875 PF01380 SIS domain E4K03_13875 PF00571 CBS domain E4K03_13880 PF09190 DALR domain E4K03_13880 PF01406 tRNA synthetases class I (C) catalytic domain E4K03_13910 PF01638 HxlR-like helix-turn-helix E4K03_13915 PF07690 Major Facilitator Superfamily E4K03_13950 PF14748 Pyrroline-5-carboxylate reductase dimerisation E4K03_13950 PF03807 NADP oxidoreductase coenzyme F420-dependent E4K03_13960 PF00313 'Cold-shock' DNA-binding domain E4K03_13965 PF01810 LysE type translocator E4K03_14000 PF13742 OB-fold nucleic acid binding domain E4K03_14000 PF02601 Exonuclease VII, large subunit E4K03_14040 PF09278 MerR, DNA binding E4K03_14040 PF00376 MerR family regulatory protein E4K03_14045 PF00403 Heavy-metal-associated domain E4K03_14050 PF00403 Heavy-metal-associated domain E4K03_14055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_14055 PF03466 LysR substrate binding domain E4K03_14060 PF00848 Ring hydroxylating alpha subunit (catalytic domain) E4K03_14060 PF00355 Rieske [2Fe-2S] domain E4K03_14065 PF00866 Ring hydroxylating beta subunit E4K03_14070 PF00175 Oxidoreductase NAD-binding domain E4K03_14070 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_14070 PF00970 Oxidoreductase FAD-binding domain E4K03_14075 PF00106 short chain dehydrogenase E4K03_14080 PF03594 Benzoate membrane transport protein E4K03_14085 PF07690 Major Facilitator Superfamily E4K03_14095 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E4K03_14095 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4K03_14100 PF00270 DEAD/DEAH box helicase E4K03_14100 PF04408 Helicase associated domain (HA2) E4K03_14100 PF00271 Helicase conserved C-terminal domain E4K03_14100 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E4K03_14100 PF11898 Domain of unknown function (DUF3418) E4K03_14105 PF10417 C-terminal domain of 1-Cys peroxiredoxin E4K03_14105 PF00578 AhpC/TSA family E4K03_14125 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_14125 PF13192 Thioredoxin domain E4K03_14135 PF02798 Glutathione S-transferase, N-terminal domain E4K03_14135 PF00043 Glutathione S-transferase, C-terminal domain E4K03_14145 PF02390 Putative methyltransferase E4K03_14150 PF13417 Glutathione S-transferase, N-terminal domain E4K03_14150 PF00043 Glutathione S-transferase, C-terminal domain E4K03_14160 PF13488 Glycine zipper E4K03_14160 PF00691 OmpA family E4K03_14165 PF01979 Amidohydrolase family E4K03_14170 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4K03_14170 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4K03_14180 PF01170 Putative RNA methylase family UPF0020 E4K03_14180 PF02926 THUMP domain E4K03_14180 PF10672 S-adenosylmethionine-dependent methyltransferase E4K03_14195 PF00004 ATPase family associated with various cellular activities (AAA) E4K03_14195 PF07724 AAA domain (Cdc48 subfamily) E4K03_14195 PF10431 C-terminal, D2-small domain, of ClpB protein E4K03_14195 PF17871 AAA lid domain E4K03_14195 PF02861 Clp amino terminal domain, pathogenicity island component E4K03_14220 PF02566 OsmC-like protein E4K03_14225 PF00027 Cyclic nucleotide-binding domain E4K03_14225 PF13545 Crp-like helix-turn-helix domain E4K03_14230 PF00248 Aldo/keto reductase family E4K03_14245 PF00709 Adenylosuccinate synthetase E4K03_14250 PF13393 Histidyl-tRNA synthetase E4K03_14260 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4K03_14260 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4K03_14265 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4K03_14265 PF01411 tRNA synthetases class II (A) E4K03_14265 PF02272 DHHA1 domain E4K03_14270 PF13840 ACT domain E4K03_14270 PF01842 ACT domain E4K03_14270 PF00696 Amino acid kinase family E4K03_14275 PF02599 Global regulator protein family E4K03_14280 PF01351 Ribonuclease HII E4K03_14290 PF01292 Prokaryotic cytochrome b561 E4K03_14310 PF00962 Adenosine/AMP deaminase E4K03_14315 PF00860 Permease family E4K03_14325 PF00743 Flavin-binding monooxygenase-like E4K03_14330 PF00106 short chain dehydrogenase E4K03_14340 PF02678 Pirin E4K03_14340 PF17954 Quercetinase C-terminal cupin domain E4K03_14345 PF00440 Bacterial regulatory proteins, tetR family E4K03_14345 PF17932 Tetracyclin repressor-like, C-terminal domain E4K03_14355 PF00106 short chain dehydrogenase E4K03_14360 PF00743 Flavin-binding monooxygenase-like E4K03_14365 PF04072 Leucine carboxyl methyltransferase E4K03_14370 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term E4K03_14370 PF12833 Helix-turn-helix domain E4K03_14375 PF00743 Flavin-binding monooxygenase-like E4K03_14380 PF00106 short chain dehydrogenase E4K03_14385 PF07859 alpha/beta hydrolase fold E4K03_14390 PF05199 GMC oxidoreductase E4K03_14395 PF03573 outer membrane porin, OprD family E4K03_14400 PF07690 Major Facilitator Superfamily E4K03_14405 PF00355 Rieske [2Fe-2S] domain E4K03_14410 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_14410 PF00175 Oxidoreductase NAD-binding domain E4K03_14425 PF07690 Major Facilitator Superfamily E4K03_14430 PF00378 Enoyl-CoA hydratase/isomerase E4K03_14435 PF00171 Aldehyde dehydrogenase family E4K03_14445 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_14445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_14445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_14455 PF13737 Transposase DDE domain E4K03_14465 PF00324 Amino acid permease E4K03_14475 PF05643 Putative bacterial lipoprotein (DUF799) E4K03_14485 PF03783 Curli production assembly/transport component CsgG E4K03_14515 PF03180 NLPA lipoprotein E4K03_14525 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_14525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4K03_14530 PF00764 Arginosuccinate synthase E4K03_14535 PF00360 Phytochrome region E4K03_14535 PF00990 Diguanylate cyclase, GGDEF domain E4K03_14535 PF01590 GAF domain E4K03_14535 PF00563 EAL domain E4K03_14540 PF01979 Amidohydrolase family E4K03_14545 PF00929 Exonuclease E4K03_14555 PF07715 TonB-dependent Receptor Plug Domain E4K03_14555 PF00593 TonB dependent receptor E4K03_14560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4K03_14560 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_14565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4K03_14565 PF00005 ABC transporter E4K03_14570 PF12911 N-terminal TM domain of oligopeptide transport permease C E4K03_14570 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_14575 PF00528 Binding-protein-dependent transport system inner membrane component E4K03_14580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4K03_14585 PF01464 Transglycosylase SLT domain E4K03_14585 PF01476 LysM domain E4K03_14585 PF01464 Transglycosylase SLT domain E4K03_14585 PF01476 LysM domain E4K03_14590 PF00929 Exonuclease E4K03_14610 PF00293 NUDIX domain E4K03_14610 PF09297 NADH pyrophosphatase zinc ribbon domain E4K03_14620 PF04972 BON domain E4K03_14635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4K03_14645 PF03466 LysR substrate binding domain E4K03_14645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_14650 PF01810 LysE type translocator E4K03_14660 PF13411 MerR HTH family regulatory protein E4K03_14670 PF01494 FAD binding domain E4K03_14675 PF01494 FAD binding domain E4K03_14680 PF05195 Aminopeptidase P, N-terminal domain E4K03_14680 PF00557 Metallopeptidase family M24 E4K03_14710 PF00884 Sulfatase E4K03_14710 PF08019 Phosphoethanolamine transferase EptA/EptB E4K03_15005 PF01726 LexA DNA binding domain E4K03_15005 PF00717 Peptidase S24-like E4K03_15095 PF01812 5-formyltetrahydrofolate cyclo-ligase family E4K03_15115 PF13737 Transposase DDE domain E4K03_15120 PF02190 ATP-dependent protease La (LON) substrate-binding domain E4K03_15120 PF00004 ATPase family associated with various cellular activities (AAA) E4K03_15120 PF05362 Lon protease (S16) C-terminal proteolytic domain E4K03_15125 PF02590 Predicted SPOUT methyltransferase E4K03_15130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E4K03_15140 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E4K03_15140 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E4K03_15145 PF04060 Putative Fe-S cluster E4K03_15150 PF00730 HhH-GPD superfamily base excision DNA repair protein E4K03_15150 PF00633 Helix-hairpin-helix motif E4K03_15150 PF10576 Iron-sulfur binding domain of endonuclease III E4K03_15160 PF05191 Adenylate kinase, active site lid E4K03_15175 PF03717 Penicillin-binding Protein dimerisation domain E4K03_15175 PF00905 Penicillin binding protein transpeptidase domain E4K03_15190 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4K03_15195 PF01730 UreF E4K03_15200 PF05194 UreE urease accessory protein, C-terminal domain E4K03_15200 PF02814 UreE urease accessory protein, N-terminal domain E4K03_15205 PF00449 Urease alpha-subunit, N-terminal domain E4K03_15205 PF01979 Amidohydrolase family E4K03_15210 PF00699 Urease beta subunit E4K03_15215 PF00547 Urease, gamma subunit E4K03_15220 PF01774 UreD urease accessory protein E4K03_15235 PF00463 Isocitrate lyase family E4K03_15240 PF03466 LysR substrate binding domain E4K03_15240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_15245 PF01595 Cyclin M transmembrane N-terminal domain E4K03_15245 PF03471 Transporter associated domain E4K03_15245 PF00571 CBS domain E4K03_15255 PF03600 Citrate transporter E4K03_15270 PF00009 Elongation factor Tu GTP binding domain E4K03_15275 PF01507 Phosphoadenosine phosphosulfate reductase family E4K03_15285 PF14052 Capsule assembly protein Wzi E4K03_15290 PF00152 tRNA synthetases class II (D, K and N) E4K03_15290 PF01336 OB-fold nucleic acid binding domain E4K03_15305 PF00301 Rubredoxin E4K03_15310 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_15310 PF18113 Rubredoxin binding C-terminal domain E4K03_15315 PF00561 alpha/beta hydrolase fold E4K03_15320 PF03466 LysR substrate binding domain E4K03_15320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_15335 PF02503 Polyphosphate kinase middle domain E4K03_15335 PF17941 Polyphosphate kinase C-terminal domain 1 E4K03_15335 PF13089 Polyphosphate kinase N-terminal domain E4K03_15335 PF13090 Polyphosphate kinase C-terminal domain 2 E4K03_15340 PF00912 Transglycosylase E4K03_15345 PF01694 Rhomboid family E4K03_15355 PF00005 ABC transporter E4K03_15360 PF13472 GDSL-like Lipase/Acylhydrolase family E4K03_15365 PF00484 Carbonic anhydrase E4K03_15370 PF00561 alpha/beta hydrolase fold E4K03_15380 PF00593 TonB dependent receptor E4K03_15380 PF07715 TonB-dependent Receptor Plug Domain E4K03_15385 PF01521 Iron-sulphur cluster biosynthesis E4K03_15385 PF01106 NifU-like domain E4K03_15395 PF00884 Sulfatase E4K03_15400 PF03781 Sulfatase-modifying factor enzyme 1 E4K03_15415 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_15420 PF01384 Phosphate transporter family E4K03_15425 PF02607 B12 binding domain E4K03_15425 PF02965 Vitamin B12 dependent methionine synthase, activation domain E4K03_15425 PF00809 Pterin binding enzyme E4K03_15425 PF02574 Homocysteine S-methyltransferase E4K03_15425 PF02310 B12 binding domain E4K03_15430 PF02780 Transketolase, C-terminal domain E4K03_15430 PF02779 Transketolase, pyrimidine binding domain E4K03_15435 PF00456 Transketolase, thiamine diphosphate binding domain E4K03_15440 PF07690 Major Facilitator Superfamily E4K03_15450 PF03466 LysR substrate binding domain E4K03_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_15465 PF01263 Aldose 1-epimerase E4K03_15475 PF07690 Major Facilitator Superfamily E4K03_15480 PF02311 AraC-like ligand binding domain E4K03_15480 PF12833 Helix-turn-helix domain E4K03_15485 PF04960 Glutaminase E4K03_15490 PF01327 Polypeptide deformylase E4K03_15495 PF07690 Major Facilitator Superfamily E4K03_15505 PF00205 Thiamine pyrophosphate enzyme, central domain E4K03_15505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4K03_15505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4K03_15510 PF00171 Aldehyde dehydrogenase family E4K03_15515 PF03447 Homoserine dehydrogenase, NAD binding domain E4K03_15515 PF01958 Domain of unknown function DUF108 E4K03_15525 PF12697 Alpha/beta hydrolase family E4K03_15535 PF07690 Major Facilitator Superfamily E4K03_15540 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_15540 PF14759 Reductase C-terminal E4K03_15545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4K03_15555 PF00355 Rieske [2Fe-2S] domain E4K03_15565 PF00355 Rieske [2Fe-2S] domain E4K03_15570 PF01614 Bacterial transcriptional regulator E4K03_15570 PF09339 IclR helix-turn-helix domain E4K03_15585 PF00378 Enoyl-CoA hydratase/isomerase E4K03_15595 PF00535 Glycosyl transferase family 2 E4K03_15600 PF14883 Hypothetical glycosyl hydrolase family 13 E4K03_15600 PF01522 Polysaccharide deacetylase E4K03_15605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4K03_15610 PF07152 YaeQ protein E4K03_15615 PF00375 Sodium:dicarboxylate symporter family E4K03_15620 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4K03_15620 PF07683 Cobalamin synthesis protein cobW C-terminal domain E4K03_15630 PF03061 Thioesterase superfamily E4K03_15640 PF02028 BCCT, betaine/carnitine/choline family transporter E4K03_15645 PF02028 BCCT, betaine/carnitine/choline family transporter E4K03_15650 PF13977 BetI-type transcriptional repressor, C-terminal E4K03_15650 PF00440 Bacterial regulatory proteins, tetR family E4K03_15655 PF00171 Aldehyde dehydrogenase family E4K03_15660 PF00732 GMC oxidoreductase E4K03_15660 PF05199 GMC oxidoreductase E4K03_15665 PF06039 Malate:quinone oxidoreductase (Mqo) E4K03_15675 PF02574 Homocysteine S-methyltransferase E4K03_15680 PF13520 Amino acid permease E4K03_15705 PF00701 Dihydrodipicolinate synthetase family E4K03_15710 PF00083 Sugar (and other) transporter E4K03_15730 PF13737 Transposase DDE domain E4K03_15740 PF13737 Transposase DDE domain E4K03_15750 PF13784 Fic/DOC family N-terminal E4K03_15750 PF02661 Fic/DOC family E4K03_15755 PF00436 Single-strand binding protein family E4K03_15800 PF00589 Phage integrase family E4K03_15800 PF13356 Arm DNA-binding domain E4K03_15815 PF07690 Major Facilitator Superfamily E4K03_15820 PF13533 Biotin-lipoyl like E4K03_15825 PF03061 Thioesterase superfamily E4K03_15830 PF00490 Delta-aminolevulinic acid dehydratase E4K03_15835 PF01266 FAD dependent oxidoreductase E4K03_15840 PF01370 NAD dependent epimerase/dehydratase family E4K03_15840 PF08338 Domain of unknown function (DUF1731) E4K03_15860 PF00149 Calcineurin-like phosphoesterase E4K03_15860 PF12320 Type 5 capsule protein repressor C-terminal domain E4K03_15870 PF01168 Alanine racemase, N-terminal domain E4K03_15875 PF00437 Type II/IV secretion system protein E4K03_15880 PF00437 Type II/IV secretion system protein E4K03_15885 PF01475 Ferric uptake regulator family E4K03_15890 PF04355 SmpA / OmlA family E4K03_15895 PF03658 RnfH family Ubiquitin E4K03_15910 PF01814 Hemerythrin HHE cation binding domain E4K03_15915 PF13230 Glutamine amidotransferases class-II E4K03_15925 PF00696 Amino acid kinase family E4K03_15930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4K03_15930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4K03_15930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4K03_15930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4K03_15935 PF00692 dUTPase E4K03_15940 PF00580 UvrD/REP helicase N-terminal domain E4K03_15940 PF13361 UvrD-like helicase C-terminal domain E4K03_15945 PF13488 Glycine zipper E4K03_15945 PF00691 OmpA family E4K03_15950 PF01553 Acyltransferase E4K03_15960 PF03775 Septum formation inhibitor MinC, C-terminal domain E4K03_15965 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E4K03_15970 PF03776 Septum formation topological specificity factor MinE E4K03_15980 PF01810 LysE type translocator E4K03_15985 PF01580 FtsK/SpoIIIE family E4K03_15985 PF09397 Ftsk gamma domain E4K03_15985 PF17854 FtsK alpha domain E4K03_15985 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E4K03_15990 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_15995 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E4K03_16000 PF04376 Arginine-tRNA-protein transferase, N terminus E4K03_16000 PF04377 Arginine-tRNA-protein transferase, C terminus E4K03_16005 PF00583 Acetyltransferase (GNAT) family E4K03_16020 PF03143 Elongation factor Tu C-terminal domain E4K03_16020 PF03144 Elongation factor Tu domain 2 E4K03_16020 PF00009 Elongation factor Tu GTP binding domain E4K03_16025 PF03764 Elongation factor G, domain IV E4K03_16025 PF03144 Elongation factor Tu domain 2 E4K03_16025 PF00679 Elongation factor G C-terminus E4K03_16025 PF00009 Elongation factor Tu GTP binding domain E4K03_16025 PF14492 Elongation Factor G, domain II E4K03_16030 PF00177 Ribosomal protein S7p/S5e E4K03_16035 PF00164 Ribosomal protein S12/S23 E4K03_16045 PF02801 Beta-ketoacyl synthase, C-terminal domain E4K03_16045 PF00109 Beta-ketoacyl synthase, N-terminal domain E4K03_16055 PF02678 Pirin E4K03_16055 PF05726 Pirin C-terminal cupin domain E4K03_16065 PF00795 Carbon-nitrogen hydrolase E4K03_16065 PF02540 NAD synthase E4K03_16080 PF00970 Oxidoreductase FAD-binding domain E4K03_16080 PF00175 Oxidoreductase NAD-binding domain E4K03_16080 PF00111 2Fe-2S iron-sulfur cluster binding domain E4K03_16085 PF00171 Aldehyde dehydrogenase family E4K03_16090 PF00355 Rieske [2Fe-2S] domain E4K03_16090 PF00848 Ring hydroxylating alpha subunit (catalytic domain) E4K03_16095 PF07859 alpha/beta hydrolase fold E4K03_16100 PF02028 BCCT, betaine/carnitine/choline family transporter E4K03_16105 PF00180 Isocitrate/isopropylmalate dehydrogenase E4K03_16110 PF03466 LysR substrate binding domain E4K03_16110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_16130 PF00037 4Fe-4S binding domain E4K03_16135 PF01467 Cytidylyltransferase-like E4K03_16140 PF01668 SmpB protein E4K03_16145 PF03358 NADPH-dependent FMN reductase E4K03_16155 PF01479 S4 domain E4K03_16155 PF00849 RNA pseudouridylate synthase E4K03_16160 PF13525 Outer membrane lipoprotein E4K03_16165 PF10410 DnaB-helicase binding domain of primase E4K03_16165 PF08275 DNA primase catalytic core, N-terminal domain E4K03_16165 PF01807 CHC2 zinc finger E4K03_16165 PF08278 DNA primase DnaG DnaB-binding E4K03_16170 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E4K03_16170 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E4K03_16170 PF01488 Shikimate / quinate 5-dehydrogenase E4K03_16180 PF03550 Outer membrane lipoprotein LolB E4K03_16185 PF08544 GHMP kinases C terminal E4K03_16185 PF00288 GHMP kinases N terminal domain E4K03_16210 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E4K03_16210 PF14572 Phosphoribosyl synthetase-associated domain E4K03_16215 PF01386 Ribosomal L25p family E4K03_16220 PF01195 Peptidyl-tRNA hydrolase E4K03_16225 PF02261 Aspartate decarboxylase E4K03_16240 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E4K03_16250 PF03070 TENA/THI-4/PQQC family E4K03_16250 PF08543 Phosphomethylpyrimidine kinase E4K03_16250 PF02581 Thiamine monophosphate synthase E4K03_16255 PF04972 BON domain E4K03_16255 PF01476 LysM domain E4K03_16260 PF00550 Phosphopantetheine attachment site E4K03_16270 PF00698 Acyl transferase domain E4K03_16275 PF01783 Ribosomal L32p protein family E4K03_16280 PF02620 Large ribosomal RNA subunit accumulation protein YceD E4K03_16285 PF04315 Elongation factor P hydroxylase E4K03_16290 PF01300 Telomere recombination E4K03_16295 PF02616 Segregation and condensation protein ScpA E4K03_16300 PF04079 Segregation and condensation complex subunit ScpB E4K03_16305 PF00849 RNA pseudouridylate synthase E4K03_16305 PF01479 S4 domain E4K03_16320 PF00155 Aminotransferase class I and II E4K03_16325 PF06968 Biotin and Thiamin Synthesis associated domain E4K03_16325 PF00202 Aminotransferase class-III E4K03_16325 PF04055 Radical SAM superfamily E4K03_16330 PF12697 Alpha/beta hydrolase family E4K03_16330 PF08241 Methyltransferase domain E4K03_16335 PF02358 Trehalose-phosphatase E4K03_16340 PF00982 Glycosyltransferase family 20 E4K03_16345 PF07690 Major Facilitator Superfamily E4K03_16350 PF00210 Ferritin-like domain E4K03_16355 PF03120 NAD-dependent DNA ligase OB-fold domain E4K03_16355 PF01653 NAD-dependent DNA ligase adenylation domain E4K03_16355 PF12826 Helix-hairpin-helix motif E4K03_16355 PF00533 BRCA1 C Terminus (BRCT) domain E4K03_16355 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E4K03_16365 PF06470 SMC proteins Flexible Hinge Domain E4K03_16365 PF02463 RecF/RecN/SMC N terminal domain E4K03_16375 PF01925 Sulfite exporter TauE/SafE E4K03_16385 PF03309 Type III pantothenate kinase E4K03_16390 PF00448 SRP54-type protein, GTPase domain E4K03_16390 PF02978 Signal peptide binding domain E4K03_16390 PF02881 SRP54-type protein, helical bundle domain E4K03_16400 PF01207 Dihydrouridine synthase (Dus) E4K03_16435 PF00692 dUTPase E4K03_16450 PF01048 Phosphorylase superfamily E4K03_16460 PF10609 NUBPL iron-transfer P-loop NTPase E4K03_16470 PF09334 tRNA synthetases class I (M) E4K03_16470 PF01588 Putative tRNA binding domain E4K03_16495 PF13533 Biotin-lipoyl like E4K03_16500 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_16515 PF05552 Conserved TM helix E4K03_16530 PF00970 Oxidoreductase FAD-binding domain E4K03_16530 PF00175 Oxidoreductase NAD-binding domain E4K03_16535 PF03466 LysR substrate binding domain E4K03_16535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_16540 PF00313 'Cold-shock' DNA-binding domain E4K03_16550 PF00361 Proton-conducting membrane transporter E4K03_16555 PF00361 Proton-conducting membrane transporter E4K03_16560 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E4K03_16560 PF00361 Proton-conducting membrane transporter E4K03_16565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E4K03_16570 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E4K03_16575 PF12838 4Fe-4S dicluster domain E4K03_16580 PF00146 NADH dehydrogenase E4K03_16585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4K03_16585 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E4K03_16585 PF00384 Molybdopterin oxidoreductase E4K03_16590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4K03_16590 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E4K03_16590 PF10531 SLBB domain E4K03_16600 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E4K03_16600 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E4K03_16605 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E4K03_16610 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E4K03_16615 PF17158 Membrane-associated sensor, integral membrane domain E4K03_16615 PF00990 Diguanylate cyclase, GGDEF domain E4K03_16625 PF00512 His Kinase A (phospho-acceptor) domain E4K03_16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_16625 PF00672 HAMP domain E4K03_16630 PF00072 Response regulator receiver domain E4K03_16630 PF00486 Transcriptional regulatory protein, C terminal E4K03_16640 PF02867 Ribonucleotide reductase, barrel domain E4K03_16640 PF00317 Ribonucleotide reductase, all-alpha domain E4K03_16640 PF03477 ATP cone domain E4K03_16650 PF00268 Ribonucleotide reductase, small chain E4K03_16655 PF13737 Transposase DDE domain E4K03_16670 PF01613 Flavin reductase like domain E4K03_16675 PF08267 Cobalamin-independent synthase, N-terminal domain E4K03_16675 PF01717 Cobalamin-independent synthase, Catalytic domain E4K03_16685 PF03466 LysR substrate binding domain E4K03_16685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_16690 PF01810 LysE type translocator E4K03_16695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_16695 PF03466 LysR substrate binding domain E4K03_16705 PF07690 Major Facilitator Superfamily E4K03_16715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_16715 PF03466 LysR substrate binding domain E4K03_16720 PF14537 Cytochrome c3 E4K03_16720 PF00890 FAD binding domain E4K03_16735 PF17932 Tetracyclin repressor-like, C-terminal domain E4K03_16735 PF00440 Bacterial regulatory proteins, tetR family E4K03_16740 PF02515 CoA-transferase family III E4K03_16745 PF07690 Major Facilitator Superfamily E4K03_16750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_16750 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_16750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_16755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_16755 PF03466 LysR substrate binding domain E4K03_16760 PF00107 Zinc-binding dehydrogenase E4K03_16760 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_16790 PF02445 Quinolinate synthetase A protein E4K03_16795 PF01960 ArgJ family E4K03_16800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4K03_16800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E4K03_16805 PF00893 Small Multidrug Resistance protein E4K03_16815 PF05275 Copper resistance protein B precursor (CopB) E4K03_16820 PF07732 Multicopper oxidase E4K03_16820 PF00394 Multicopper oxidase E4K03_16820 PF07731 Multicopper oxidase E4K03_16835 PF00834 Ribulose-phosphate 3 epimerase family E4K03_16845 PF00756 Putative esterase E4K03_16855 PF04445 Putative SAM-dependent methyltransferase E4K03_16860 PF00814 Glycoprotease family E4K03_16865 PF00132 Bacterial transferase hexapeptide (six repeats) E4K03_16870 PF00293 NUDIX domain E4K03_16880 PF00872 Transposase, Mutator family E4K03_16895 PF04715 Anthranilate synthase component I, N terminal region E4K03_16895 PF00425 chorismate binding enzyme E4K03_16900 PF00155 Aminotransferase class I and II E4K03_16905 PF00815 Histidinol dehydrogenase E4K03_16910 PF01634 ATP phosphoribosyltransferase E4K03_16915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4K03_16920 PF01722 BolA-like protein E4K03_16925 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E4K03_16930 PF04963 Sigma-54 factor, core binding domain E4K03_16930 PF00309 Sigma-54 factor, Activator interacting domain (AID) E4K03_16930 PF04552 Sigma-54, DNA binding domain E4K03_16975 PF00795 Carbon-nitrogen hydrolase E4K03_16985 PF01047 MarR family E4K03_16990 PF02566 OsmC-like protein E4K03_16995 PF00437 Type II/IV secretion system protein E4K03_17015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E4K03_17015 PF01367 5'-3' exonuclease, C-terminal SAM fold E4K03_17015 PF00476 DNA polymerase family A E4K03_17015 PF01612 3'-5' exonuclease E4K03_17020 PF02325 YGGT family E4K03_17025 PF03807 NADP oxidoreductase coenzyme F420-dependent E4K03_17025 PF14748 Pyrroline-5-carboxylate reductase dimerisation E4K03_17030 PF09179 TilS substrate binding domain E4K03_17030 PF11734 TilS substrate C-terminal domain E4K03_17030 PF01171 PP-loop family E4K03_17035 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E4K03_17040 PF02541 Ppx/GppA phosphatase family E4K03_17045 PF00085 Thioredoxin E4K03_17050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4K03_17050 PF07497 Rho termination factor, RNA-binding domain E4K03_17050 PF07498 Rho termination factor, N-terminal domain E4K03_17065 PF00216 Bacterial DNA-binding protein E4K03_17070 PF03484 tRNA synthetase B5 domain E4K03_17070 PF03147 Ferredoxin-fold anticodon binding domain E4K03_17070 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E4K03_17070 PF01588 Putative tRNA binding domain E4K03_17070 PF03483 B3/4 domain E4K03_17075 PF01409 tRNA synthetases class II core domain (F) E4K03_17075 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E4K03_17095 PF00453 Ribosomal protein L20 E4K03_17100 PF01632 Ribosomal protein L35 E4K03_17105 PF07690 Major Facilitator Superfamily E4K03_17110 PF09335 SNARE associated Golgi protein E4K03_17115 PF02798 Glutathione S-transferase, N-terminal domain E4K03_17115 PF00043 Glutathione S-transferase, C-terminal domain E4K03_17120 PF00707 Translation initiation factor IF-3, C-terminal domain E4K03_17120 PF05198 Translation initiation factor IF-3, N-terminal domain E4K03_17125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4K03_17125 PF03129 Anticodon binding domain E4K03_17125 PF02824 TGS domain E4K03_17125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4K03_17130 PF13193 AMP-binding enzyme C-terminal domain E4K03_17130 PF00501 AMP-binding enzyme E4K03_17135 PF04751 Protein of unknown function (DUF615) E4K03_17140 PF00381 PTS HPr component phosphorylation site E4K03_17145 PF03668 P-loop ATPase protein family E4K03_17150 PF02569 Pantoate-beta-alanine ligase E4K03_17155 PF02548 Ketopantoate hydroxymethyltransferase E4K03_17160 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E4K03_17165 PF01743 Poly A polymerase head domain E4K03_17165 PF12627 Probable RNA and SrmB- binding site of polymerase A E4K03_17165 PF12626 Polymerase A arginine-rich C-terminus E4K03_17175 PF03819 MazG nucleotide pyrophosphohydrolase domain E4K03_17185 PF04607 Region found in RelA / SpoT proteins E4K03_17185 PF02824 TGS domain E4K03_17185 PF13291 ACT domain E4K03_17190 PF05958 tRNA (Uracil-5-)-methyltransferase E4K03_17200 PF00291 Pyridoxal-phosphate dependent enzyme E4K03_17205 PF00072 Response regulator receiver domain E4K03_17205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E4K03_17205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K03_17205 PF00672 HAMP domain E4K03_17205 PF01627 Hpt domain E4K03_17205 PF00512 His Kinase A (phospho-acceptor) domain E4K03_17210 PF00378 Enoyl-CoA hydratase/isomerase E4K03_17215 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4K03_17215 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4K03_17220 PF01261 Xylose isomerase-like TIM barrel E4K03_17230 PF00106 short chain dehydrogenase E4K03_17235 PF02233 NAD(P) transhydrogenase beta subunit E4K03_17240 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E4K03_17245 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E4K03_17245 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E4K03_17250 PF00892 EamA-like transporter family E4K03_17260 PF07690 Major Facilitator Superfamily E4K03_17265 PF01207 Dihydrouridine synthase (Dus) E4K03_17275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_17275 PF03466 LysR substrate binding domain E4K03_17285 PF00899 ThiF family E4K03_17290 PF00694 Aconitase C-terminal domain E4K03_17290 PF00330 Aconitase family (aconitate hydratase) E4K03_17295 PF01026 TatD related DNase E4K03_17310 PF00009 Elongation factor Tu GTP binding domain E4K03_17310 PF03144 Elongation factor Tu domain 2 E4K03_17310 PF16658 Class II release factor RF3, C-terminal domain E4K03_17320 PF13737 Transposase DDE domain E4K03_17335 PF03707 Bacterial signalling protein N terminal repeat E4K03_17335 PF00990 Diguanylate cyclase, GGDEF domain E4K03_17335 PF00563 EAL domain E4K03_17340 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E4K03_17340 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E4K03_17345 PF10369 Small subunit of acetolactate synthase E4K03_17350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4K03_17350 PF00205 Thiamine pyrophosphate enzyme, central domain E4K03_17350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4K03_17360 PF08264 Anticodon-binding domain of tRNA E4K03_17360 PF00133 tRNA synthetases class I (I, L, M and V) E4K03_17360 PF09334 tRNA synthetases class I (M) E4K03_17360 PF13603 Leucyl-tRNA synthetase, Domain 2 E4K03_17375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4K03_17380 PF00005 ABC transporter E4K03_17380 PF02687 FtsX-like permease family E4K03_17380 PF12704 MacB-like periplasmic core domain E4K03_17385 PF02321 Outer membrane efflux protein E4K03_17400 PF00929 Exonuclease E4K03_17405 PF03193 RsgA GTPase E4K03_17415 PF00462 Glutaredoxin E4K03_17420 PF02556 Preprotein translocase subunit SecB E4K03_17430 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E4K03_17430 PF01926 50S ribosome-binding GTPase E4K03_17435 PF13360 PQQ-like domain E4K03_17445 PF13393 Histidyl-tRNA synthetase E4K03_17445 PF03129 Anticodon binding domain E4K03_17450 PF04551 GcpE protein E4K03_17455 PF13464 Domain of unknown function (DUF4115) E4K03_17465 PF04055 Radical SAM superfamily E4K03_17470 PF00334 Nucleoside diphosphate kinase E4K03_17475 PF04384 Iron-sulphur cluster assembly E4K03_17480 PF01569 PAP2 superfamily E4K03_17485 PF13439 Glycosyltransferase Family 4 E4K03_17485 PF00534 Glycosyl transferases group 1 E4K03_17490 PF03572 Peptidase family S41 E4K03_17490 PF00595 PDZ domain E4K03_17490 PF17804 Tail specific protease N-terminal domain E4K03_17490 PF11818 C-terminal domain of tail specific protease (DUF3340) E4K03_17495 PF00933 Glycosyl hydrolase family 3 N terminal domain E4K03_17505 PF00561 alpha/beta hydrolase fold E4K03_17510 PF00171 Aldehyde dehydrogenase family E4K03_17515 PF00171 Aldehyde dehydrogenase family E4K03_17520 PF01202 Shikimate kinase E4K03_17525 PF02447 GntP family permease E4K03_17530 PF01081 KDPG and KHG aldolase E4K03_17535 PF00920 Dehydratase family E4K03_17540 PF00871 Acetokinase family E4K03_17545 PF07085 DRTGG domain E4K03_17545 PF01515 Phosphate acetyl/butaryl transferase E4K03_17550 PF05683 Fumarase C-terminus E4K03_17550 PF05681 Fumarate hydratase (Fumerase) E4K03_17565 PF07724 AAA domain (Cdc48 subfamily) E4K03_17565 PF10431 C-terminal, D2-small domain, of ClpB protein E4K03_17565 PF06689 ClpX C4-type zinc finger E4K03_17570 PF00574 Clp protease E4K03_17575 PF05698 Bacterial trigger factor protein (TF) C-terminus E4K03_17575 PF05697 Bacterial trigger factor protein (TF) E4K03_17575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4K03_17580 PF07715 TonB-dependent Receptor Plug Domain E4K03_17580 PF00593 TonB dependent receptor E4K03_17585 PF18331 PKHD-type hydroxylase C-terminal domain E4K03_17585 PF13640 2OG-Fe(II) oxygenase superfamily E4K03_17590 PF00682 HMGL-like E4K03_17590 PF08502 LeuA allosteric (dimerisation) domain E4K03_17595 PF00561 alpha/beta hydrolase fold E4K03_17600 PF07021 Methionine biosynthesis protein MetW E4K03_17600 PF00561 alpha/beta hydrolase fold E4K03_17610 PF01725 Ham1 family E4K03_17620 PF02416 mttA/Hcf106 family E4K03_17625 PF02416 mttA/Hcf106 family E4K03_17630 PF00902 Sec-independent protein translocase protein (TatC) E4K03_17650 PF01790 Prolipoprotein diacylglyceryl transferase E4K03_17665 PF00303 Thymidylate synthase E4K03_17670 PF00186 Dihydrofolate reductase E4K03_17680 PF01625 Peptide methionine sulfoxide reductase E4K03_17690 PF01618 MotA/TolQ/ExbB proton channel family E4K03_17700 PF00551 Formyl transferase E4K03_17700 PF01842 ACT domain E4K03_17710 PF00171 Aldehyde dehydrogenase family E4K03_17715 PF00830 Ribosomal L28 family E4K03_17720 PF00471 Ribosomal protein L33 E4K03_17725 PF00999 Sodium/hydrogen exchanger family E4K03_17725 PF02254 TrkA-N domain E4K03_17745 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) E4K03_17750 PF00580 UvrD/REP helicase N-terminal domain E4K03_17750 PF13361 UvrD-like helicase C-terminal domain E4K03_17765 PF08272 Topoisomerase I zinc-ribbon-like E4K03_17765 PF01396 Topoisomerase DNA binding C4 zinc finger E4K03_17765 PF01751 Toprim domain E4K03_17765 PF01131 DNA topoisomerase E4K03_17775 PF01638 HxlR-like helix-turn-helix E4K03_17780 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_17780 PF00107 Zinc-binding dehydrogenase E4K03_17795 PF01810 LysE type translocator E4K03_17800 PF03279 Bacterial lipid A biosynthesis acyltransferase E4K03_17810 PF00375 Sodium:dicarboxylate symporter family E4K03_17820 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4K03_17820 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4K03_17840 PF01416 tRNA pseudouridine synthase E4K03_17850 PF01176 Translation initiation factor 1A / IF-1 E4K03_17865 PF00180 Isocitrate/isopropylmalate dehydrogenase E4K03_17875 PF00694 Aconitase C-terminal domain E4K03_17880 PF00330 Aconitase family (aconitate hydratase) E4K03_17890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_17890 PF03466 LysR substrate binding domain E4K03_17900 PF00293 NUDIX domain E4K03_17905 PF02896 PEP-utilising enzyme, TIM barrel domain E4K03_17905 PF05524 PEP-utilising enzyme, N-terminal E4K03_17905 PF00391 PEP-utilising enzyme, mobile domain E4K03_17905 PF01590 GAF domain E4K03_17910 PF00141 Peroxidase E4K03_17915 PF12706 Beta-lactamase superfamily domain E4K03_17920 PF03466 LysR substrate binding domain E4K03_17920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_17930 PF02798 Glutathione S-transferase, N-terminal domain E4K03_17935 PF08279 HTH domain E4K03_17935 PF13280 WYL domain E4K03_17940 PF13419 Haloacid dehalogenase-like hydrolase E4K03_17945 PF00849 RNA pseudouridylate synthase E4K03_17945 PF01479 S4 domain E4K03_17955 PF00575 S1 RNA binding domain E4K03_17955 PF12111 Polyribonucleotide phosphorylase C terminal E4K03_17955 PF10150 Ribonuclease E/G family E4K03_17960 PF13193 AMP-binding enzyme C-terminal domain E4K03_17960 PF00501 AMP-binding enzyme E4K03_17975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K03_17975 PF03466 LysR substrate binding domain E4K03_17980 PF00106 short chain dehydrogenase E4K03_17985 PF06969 HemN C-terminal domain E4K03_17985 PF04055 Radical SAM superfamily E4K03_17995 PF01554 MatE E4K03_18000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_18000 PF08028 Acyl-CoA dehydrogenase, C-terminal domain E4K03_18000 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_18005 PF08028 Acyl-CoA dehydrogenase, C-terminal domain E4K03_18005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_18010 PF03109 ABC1 family E4K03_18015 PF01197 Ribosomal protein L31 E4K03_18030 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E4K03_18050 PF03884 DNA gyrase inhibitor YacG E4K03_18055 PF00753 Metallo-beta-lactamase superfamily E4K03_18060 PF00762 Ferrochelatase E4K03_18070 PF01177 Asp/Glu/Hydantoin racemase E4K03_18085 PF01206 Sulfurtransferase TusA E4K03_18090 PF00571 CBS domain E4K03_18090 PF03471 Transporter associated domain E4K03_18095 PF00795 Carbon-nitrogen hydrolase E4K03_18100 PF01588 Putative tRNA binding domain E4K03_18110 PF08334 Type II secretion system (T2SS), protein G E4K03_18110 PF07963 Prokaryotic N-terminal methylation motif E4K03_18115 PF00482 Type II secretion system (T2SS), protein F E4K03_18135 PF02384 N-6 DNA Methylase E4K03_18135 PF12161 HsdM N-terminal domain E4K03_18145 PF00271 Helicase conserved C-terminal domain E4K03_18145 PF04851 Type III restriction enzyme, res subunit E4K03_18145 PF08463 EcoEI R protein C-terminal E4K03_18145 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E4K03_18155 PF13361 UvrD-like helicase C-terminal domain E4K03_18155 PF00580 UvrD/REP helicase N-terminal domain E4K03_18160 PF13180 PDZ domain E4K03_18165 PF01435 Peptidase family M48 E4K03_18170 PF17151 Periplasmic sensor domain E4K03_18170 PF00990 Diguanylate cyclase, GGDEF domain E4K03_18180 PF13737 Transposase DDE domain E4K03_18195 PF00999 Sodium/hydrogen exchanger family E4K03_18195 PF02080 TrkA-C domain E4K03_18195 PF02254 TrkA-N domain E4K03_18200 PF00085 Thioredoxin E4K03_18220 PF07724 AAA domain (Cdc48 subfamily) E4K03_18220 PF17871 AAA lid domain E4K03_18220 PF02861 Clp amino terminal domain, pathogenicity island component E4K03_18220 PF10431 C-terminal, D2-small domain, of ClpB protein E4K03_18220 PF00004 ATPase family associated with various cellular activities (AAA) E4K03_18225 PF00011 Hsp20/alpha crystallin family E4K03_18230 PF12728 Helix-turn-helix domain E4K03_18245 PF00872 Transposase, Mutator family E4K03_18260 PF13614 AAA domain E4K03_18265 PF02195 ParB-like nuclease domain E4K03_18265 PF17762 HTH domain found in ParB protein E4K03_18270 PF00245 Alkaline phosphatase E4K03_18305 PF13173 AAA domain E4K03_18305 PF13635 Domain of unknown function (DUF4143) E4K03_18380 PF00665 Integrase core domain E4K03_18380 PF13333 Integrase core domain E4K03_18380 PF13276 HTH-like domain E4K03_18395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4K03_18400 PF00873 AcrB/AcrD/AcrF family E4K03_18420 PF13610 DDE domain E4K03_18425 PF00376 MerR family regulatory protein E4K03_18425 PF09278 MerR, DNA binding E4K03_18430 PF02411 MerT mercuric transport protein E4K03_18435 PF00403 Heavy-metal-associated domain E4K03_18440 PF03203 MerC mercury resistance protein E4K03_18445 PF00403 Heavy-metal-associated domain E4K03_18445 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K03_18445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4K03_18450 PF13411 MerR HTH family regulatory protein E4K03_18455 PF05052 MerE protein E4K03_18465 PF00563 EAL domain E4K03_18465 PF11809 Domain of unknown function (DUF3330) E4K03_18490 PF02661 Fic/DOC family E4K03_18520 PF13635 Domain of unknown function (DUF4143) E4K03_18520 PF13173 AAA domain E4K03_18525 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system E4K03_18545 PF07969 Amidohydrolase family E4K03_18555 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E4K03_18580 PF13086 AAA domain E4K03_18580 PF13195 Protein of unknown function (DUF4011) E4K03_18580 PF13087 AAA domain E4K03_18590 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system E4K03_18645 PF05973 Phage derived protein Gp49-like (DUF891) E4K03_18670 PF05973 Phage derived protein Gp49-like (DUF891) E4K03_18675 PF01381 Helix-turn-helix E4K03_18700 PF01381 Helix-turn-helix E4K03_18705 PF02583 Metal-sensitive transcriptional repressor E4K03_18710 PF00107 Zinc-binding dehydrogenase E4K03_18710 PF08240 Alcohol dehydrogenase GroES-like domain E4K03_18715 PF00756 Putative esterase E4K03_18730 PF00465 Iron-containing alcohol dehydrogenase E4K03_18745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4K03_18755 PF00440 Bacterial regulatory proteins, tetR family E4K03_18755 PF16925 Tetracyclin repressor-like, C-terminal domain E4K03_18760 PF16884 N-terminal domain of oxidoreductase E4K03_18760 PF00107 Zinc-binding dehydrogenase E4K03_18770 PF04151 Bacterial pre-peptidase C-terminal domain E4K03_18775 PF00589 Phage integrase family E4K03_18775 PF13356 Arm DNA-binding domain E4K03_18845 PF12161 HsdM N-terminal domain E4K03_18845 PF02384 N-6 DNA Methylase E4K03_18955 PF08751 TrwC relaxase E4K03_18955 PF18340 DNA relaxase TraI 2B/2B-like domain E4K03_18955 PF18272 single-stranded DNA binding TraI N-terminal subdomain E4K03_18955 PF07057 DNA helicase TraI E4K03_18965 PF00872 Transposase, Mutator family E4K03_18985 PF00239 Resolvase, N terminal domain E4K03_18985 PF02796 Helix-turn-helix domain of resolvase E4K03_19000 PF01464 Transglycosylase SLT domain E4K03_19035 PF13098 Thioredoxin-like domain E4K03_19035 PF10411 Disulfide bond isomerase protein N-terminus E4K03_19070 PF06834 TraU protein E4K03_19080 PF06986 Type-1V conjugative transfer system mating pair stabilisation E4K03_19095 PF06122 Conjugative relaxosome accessory transposon protein E4K03_19115 PF13438 Domain of unknown function (DUF4113) E4K03_19115 PF00817 impB/mucB/samB family E4K03_19115 PF11799 impB/mucB/samB family C-terminal domain E4K03_19115 PF11798 IMS family HHH motif E4K03_19195 PF00565 Staphylococcal nuclease homologue E4K03_19200 PF00816 H-NS histone family E4K03_19245 PF13614 AAA domain E4K03_19250 PF17762 HTH domain found in ParB protein E4K03_19250 PF02195 ParB-like nuclease domain E4K03_19255 PF01012 Electron transfer flavoprotein domain E4K03_19255 PF00766 Electron transfer flavoprotein FAD-binding domain E4K03_19260 PF04851 Type III restriction enzyme, res subunit E4K03_19270 PF00717 Peptidase S24-like E4K03_19275 PF13438 Domain of unknown function (DUF4113) E4K03_19275 PF11799 impB/mucB/samB family C-terminal domain E4K03_19275 PF00817 impB/mucB/samB family E4K03_19275 PF11798 IMS family HHH motif E4K03_19280 PF05016 ParE toxin of type II toxin-antitoxin system, parDE E4K03_19295 PF00239 Resolvase, N terminal domain E4K03_19295 PF02796 Helix-turn-helix domain of resolvase E4K03_19310 PF01526 Tn3 transposase DDE domain E4K03_19310 PF13700 Domain of unknown function (DUF4158) E4K03_19330 PF00884 Sulfatase E4K03_19330 PF08019 Phosphoethanolamine transferase EptA/EptB E4K03_19355 PF13614 AAA domain E4K03_19360 PF01051 Initiator Replication protein E4K03_19385 PF00378 Enoyl-CoA hydratase/isomerase E4K03_19390 PF00106 short chain dehydrogenase E4K03_19395 PF00378 Enoyl-CoA hydratase/isomerase E4K03_19400 PF02803 Thiolase, C-terminal domain E4K03_19400 PF00108 Thiolase, N-terminal domain E4K03_19405 PF13193 AMP-binding enzyme C-terminal domain E4K03_19405 PF00501 AMP-binding enzyme E4K03_19415 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_19415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_19415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_19440 PF07690 Major Facilitator Superfamily E4K03_19445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K03_19445 PF12806 Acetyl-CoA dehydrogenase C-terminal like E4K03_19445 PF02770 Acyl-CoA dehydrogenase, middle domain E4K03_19445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K03_19450 PF01575 MaoC like domain E4K03_19455 PF01012 Electron transfer flavoprotein domain