locus-tag class description FK728_00001 PF00579 tRNA synthetases class I (W and Y) FK728_00002 PF03702 Anhydro-N-acetylmuramic acid kinase FK728_00003 PF00561 alpha/beta hydrolase fold FK728_00004 PF01521 Iron-sulphur cluster biosynthesis FK728_00008 PF12848 ABC transporter FK728_00008 PF00005 ABC transporter FK728_00009 PF09335 SNARE associated Golgi protein FK728_00011 PF01751 Toprim domain FK728_00011 PF00986 DNA gyrase B subunit, carboxyl terminus FK728_00011 PF00204 DNA gyrase B FK728_00011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_00011 PF18053 DNA gyrase B subunit insert domain FK728_00012 PF02463 RecF/RecN/SMC N terminal domain FK728_00013 PF02768 DNA polymerase III beta subunit, C-terminal domain FK728_00013 PF02767 DNA polymerase III beta subunit, central domain FK728_00013 PF00712 DNA polymerase III beta subunit, N-terminal domain FK728_00014 PF08299 Bacterial dnaA protein helix-turn-helix FK728_00014 PF11638 DnaA N-terminal domain FK728_00014 PF00308 Bacterial dnaA protein FK728_00015 PF00468 Ribosomal protein L34 FK728_00016 PF00825 Ribonuclease P FK728_00017 PF01809 Putative membrane protein insertion efficiency factor FK728_00018 PF14849 YidC periplasmic domain FK728_00018 PF02096 60Kd inner membrane protein FK728_00019 PF10396 GTP-binding protein TrmE N-terminus FK728_00019 PF01926 50S ribosome-binding GTPase FK728_00019 PF12631 MnmE helical domain FK728_00020 PF02583 Metal-sensitive transcriptional repressor FK728_00021 PF01545 Cation efflux family FK728_00021 PF16916 Dimerisation domain of Zinc Transporter FK728_00022 PF13098 Thioredoxin-like domain FK728_00022 PF10411 Disulfide bond isomerase protein N-terminus FK728_00024 PF00156 Phosphoribosyl transferase domain FK728_00026 PF01979 Amidohydrolase family FK728_00027 PF00355 Rieske [2Fe-2S] domain FK728_00028 PF03738 Glutathionylspermidine synthase preATP-grasp FK728_00030 PF03741 Integral membrane protein TerC family FK728_00031 PF01569 PAP2 superfamily FK728_00033 PF08245 Mur ligase middle domain FK728_00033 PF02875 Mur ligase family, glutamate ligase domain FK728_00033 PF01225 Mur ligase family, catalytic domain FK728_00035 PF00731 AIR carboxylase FK728_00036 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FK728_00036 PF02222 ATP-grasp domain FK728_00037 PF13406 Transglycosylase SLT domain FK728_00041 PF00012 Hsp70 protein FK728_00042 PF01025 GrpE FK728_00043 PF03466 LysR substrate binding domain FK728_00043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00047 PF07859 alpha/beta hydrolase fold FK728_00048 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FK728_00056 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK728_00057 PF01252 Signal peptidase (SPase) II FK728_00058 PF06827 Zinc finger found in FPG and IleRS FK728_00058 PF08264 Anticodon-binding domain of tRNA FK728_00058 PF00133 tRNA synthetases class I (I, L, M and V) FK728_00059 PF06574 FAD synthetase FK728_00059 PF01687 Riboflavin kinase FK728_00061 PF01048 Phosphorylase superfamily FK728_00062 PF08362 YcdC-like protein, C-terminal region FK728_00062 PF00440 Bacterial regulatory proteins, tetR family FK728_00063 PF00005 ABC transporter FK728_00064 PF00528 Binding-protein-dependent transport system inner membrane component FK728_00065 PF00296 Luciferase-like monooxygenase FK728_00066 PF09084 NMT1/THI5 like FK728_00067 PF09084 NMT1/THI5 like FK728_00068 PF00696 Amino acid kinase family FK728_00068 PF00583 Acetyltransferase (GNAT) family FK728_00071 PF00106 short chain dehydrogenase FK728_00072 PF13419 Haloacid dehalogenase-like hydrolase FK728_00074 PF01323 DSBA-like thioredoxin domain FK728_00075 PF00440 Bacterial regulatory proteins, tetR family FK728_00075 PF08360 QacR-like protein, C-terminal region FK728_00076 PF00440 Bacterial regulatory proteins, tetR family FK728_00077 PF00175 Oxidoreductase NAD-binding domain FK728_00078 PF00487 Fatty acid desaturase FK728_00079 PF03725 3' exoribonuclease family, domain 2 FK728_00079 PF01138 3' exoribonuclease family, domain 1 FK728_00080 PF04185 Phosphoesterase family FK728_00080 PF05506 Domain of unknown function (DUF756) FK728_00082 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FK728_00082 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FK728_00083 PF01510 N-acetylmuramoyl-L-alanine amidase FK728_00084 PF03023 Lipid II flippase MurJ FK728_00085 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FK728_00085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK728_00086 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FK728_00086 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK728_00087 PF13614 AAA domain FK728_00087 PF13807 G-rich domain on putative tyrosine kinase FK728_00087 PF02706 Chain length determinant protein FK728_00088 PF01451 Low molecular weight phosphotyrosine protein phosphatase FK728_00089 PF02563 Polysaccharide biosynthesis/export protein FK728_00089 PF10531 SLBB domain FK728_00089 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FK728_00090 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FK728_00090 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FK728_00090 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FK728_00091 PF16363 GDP-mannose 4,6 dehydratase FK728_00092 PF04321 RmlD substrate binding domain FK728_00093 PF00483 Nucleotidyl transferase FK728_00094 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FK728_00095 PF01943 Polysaccharide biosynthesis protein FK728_00096 PF00535 Glycosyl transferase family 2 FK728_00096 PF00534 Glycosyl transferases group 1 FK728_00098 PF00534 Glycosyl transferases group 1 FK728_00098 PF13439 Glycosyltransferase Family 4 FK728_00099 PF00535 Glycosyl transferase family 2 FK728_00100 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_00101 PF01370 NAD dependent epimerase/dehydratase family FK728_00103 PF02397 Bacterial sugar transferase FK728_00104 PF00483 Nucleotidyl transferase FK728_00105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FK728_00105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FK728_00105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FK728_00106 PF00342 Phosphoglucose isomerase FK728_00108 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FK728_00108 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FK728_00108 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FK728_00108 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FK728_00109 PF02652 L-lactate permease FK728_00110 PF00392 Bacterial regulatory proteins, gntR family FK728_00110 PF07729 FCD domain FK728_00111 PF01070 FMN-dependent dehydrogenase FK728_00112 PF09330 D-lactate dehydrogenase, membrane binding FK728_00112 PF01565 FAD binding domain FK728_00113 PF00155 Aminotransferase class I and II FK728_00114 PF00392 Bacterial regulatory proteins, gntR family FK728_00114 PF07729 FCD domain FK728_00116 PF00285 Citrate synthase, C-terminal domain FK728_00117 PF00694 Aconitase C-terminal domain FK728_00117 PF00330 Aconitase family (aconitate hydratase) FK728_00124 PF13333 Integrase core domain FK728_00124 PF00665 Integrase core domain FK728_00124 PF13276 HTH-like domain FK728_00125 PF00109 Beta-ketoacyl synthase, N-terminal domain FK728_00125 PF02801 Beta-ketoacyl synthase, C-terminal domain FK728_00134 PF00849 RNA pseudouridylate synthase FK728_00137 PF07715 TonB-dependent Receptor Plug Domain FK728_00137 PF00593 TonB dependent receptor FK728_00139 PF01037 Lrp/AsnC ligand binding domain FK728_00140 PF01266 FAD dependent oxidoreductase FK728_00141 PF00842 Alanine racemase, C-terminal domain FK728_00141 PF01168 Alanine racemase, N-terminal domain FK728_00142 PF01042 Endoribonuclease L-PSP FK728_00143 PF00324 Amino acid permease FK728_00144 PF00324 Amino acid permease FK728_00146 PF00171 Aldehyde dehydrogenase family FK728_00147 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FK728_00147 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FK728_00148 PF00501 AMP-binding enzyme FK728_00148 PF13193 AMP-binding enzyme C-terminal domain FK728_00149 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_00149 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_00149 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_00150 PF00378 Enoyl-CoA hydratase/isomerase FK728_00151 PF00378 Enoyl-CoA hydratase/isomerase FK728_00152 PF00083 Sugar (and other) transporter FK728_00152 PF07690 Major Facilitator Superfamily FK728_00153 PF00765 Autoinducer synthase FK728_00155 PF00196 Bacterial regulatory proteins, luxR family FK728_00155 PF03472 Autoinducer binding domain FK728_00156 PF00501 AMP-binding enzyme FK728_00157 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_00157 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_00157 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_00158 PF00109 Beta-ketoacyl synthase, N-terminal domain FK728_00158 PF08242 Methyltransferase domain FK728_00158 PF02801 Beta-ketoacyl synthase, C-terminal domain FK728_00158 PF00550 Phosphopantetheine attachment site FK728_00158 PF14765 Polyketide synthase dehydratase FK728_00158 PF00975 Thioesterase domain FK728_00158 PF16197 Ketoacyl-synthetase C-terminal extension FK728_00159 PF13193 AMP-binding enzyme C-terminal domain FK728_00159 PF00501 AMP-binding enzyme FK728_00159 PF00668 Condensation domain FK728_00159 PF00550 Phosphopantetheine attachment site FK728_00159 PF00975 Thioesterase domain FK728_00162 PF12697 Alpha/beta hydrolase family FK728_00163 PF01648 4'-phosphopantetheinyl transferase superfamily FK728_00166 PF01722 BolA-like protein FK728_00168 PF13614 AAA domain FK728_00171 PF09335 SNARE associated Golgi protein FK728_00172 PF07681 DoxX FK728_00173 PF04286 Protein of unknown function (DUF445) FK728_00174 PF00958 GMP synthase C terminal domain FK728_00174 PF02540 NAD synthase FK728_00174 PF00117 Glutamine amidotransferase class-I FK728_00175 PF01909 Nucleotidyltransferase domain FK728_00175 PF13427 Domain of unknown function (DUF4111) FK728_00176 PF03551 Transcriptional regulator PadR-like family FK728_00178 PF05726 Pirin C-terminal cupin domain FK728_00178 PF02678 Pirin FK728_00182 PF00750 tRNA synthetases class I (R) FK728_00182 PF03485 Arginyl tRNA synthetase N terminal domain FK728_00182 PF05746 DALR anticodon binding domain FK728_00183 PF00390 Malic enzyme, N-terminal domain FK728_00183 PF03949 Malic enzyme, NAD binding domain FK728_00184 PF04261 Dyp-type peroxidase family FK728_00185 PF01810 LysE type translocator FK728_00186 PF00950 ABC 3 transport family FK728_00187 PF00005 ABC transporter FK728_00191 PF00119 ATP synthase A chain FK728_00192 PF00137 ATP synthase subunit C FK728_00193 PF00430 ATP synthase B/B' CF(0) FK728_00194 PF00213 ATP synthase delta (OSCP) subunit FK728_00195 PF02874 ATP synthase alpha/beta family, beta-barrel domain FK728_00195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FK728_00195 PF00306 ATP synthase alpha/beta chain, C terminal domain FK728_00196 PF00231 ATP synthase FK728_00197 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FK728_00197 PF02874 ATP synthase alpha/beta family, beta-barrel domain FK728_00198 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FK728_00200 PF00255 Glutathione peroxidase FK728_00202 PF07690 Major Facilitator Superfamily FK728_00203 PF00440 Bacterial regulatory proteins, tetR family FK728_00204 PF00892 EamA-like transporter family FK728_00205 PF01300 Telomere recombination FK728_00206 PF17782 DprA winged helix domain FK728_00206 PF02481 DNA recombination-mediator protein A FK728_00212 PF01327 Polypeptide deformylase FK728_00214 PF07715 TonB-dependent Receptor Plug Domain FK728_00214 PF00593 TonB dependent receptor FK728_00217 PF00440 Bacterial regulatory proteins, tetR family FK728_00224 PF00291 Pyridoxal-phosphate dependent enzyme FK728_00227 PF03358 NADPH-dependent FMN reductase FK728_00231 PF08497 Radical SAM N-terminal FK728_00231 PF11842 Domain of unknown function (DUF3362) FK728_00231 PF04055 Radical SAM superfamily FK728_00234 PF11798 IMS family HHH motif FK728_00234 PF11799 impB/mucB/samB family C-terminal domain FK728_00234 PF00817 impB/mucB/samB family FK728_00236 PF07690 Major Facilitator Superfamily FK728_00237 PF03641 Possible lysine decarboxylase FK728_00238 PF03741 Integral membrane protein TerC family FK728_00238 PF03471 Transporter associated domain FK728_00239 PF02810 SEC-C motif FK728_00240 PF03458 UPF0126 domain FK728_00241 PF07690 Major Facilitator Superfamily FK728_00242 PF00521 DNA gyrase/topoisomerase IV, subunit A FK728_00242 PF03989 DNA gyrase C-terminal domain, beta-propeller FK728_00243 PF00501 AMP-binding enzyme FK728_00243 PF13193 AMP-binding enzyme C-terminal domain FK728_00246 PF00719 Inorganic pyrophosphatase FK728_00247 PF03573 outer membrane porin, OprD family FK728_00250 PF00701 Dihydrodipicolinate synthetase family FK728_00251 PF00596 Class II Aldolase and Adducin N-terminal domain FK728_00252 PF00392 Bacterial regulatory proteins, gntR family FK728_00252 PF00155 Aminotransferase class I and II FK728_00255 PF00665 Integrase core domain FK728_00263 PF00672 HAMP domain FK728_00263 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_00263 PF00512 His Kinase A (phospho-acceptor) domain FK728_00264 PF00486 Transcriptional regulatory protein, C terminal FK728_00264 PF00072 Response regulator receiver domain FK728_00266 PF07732 Multicopper oxidase FK728_00266 PF07731 Multicopper oxidase FK728_00266 PF00394 Multicopper oxidase FK728_00270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_00271 PF00873 AcrB/AcrD/AcrF family FK728_00273 PF02421 Ferrous iron transport protein B FK728_00273 PF07670 Nucleoside recognition FK728_00273 PF07664 Ferrous iron transport protein B C terminus FK728_00276 PF13411 MerR HTH family regulatory protein FK728_00280 PF14461 Prokaryotic E2 family B FK728_00280 PF00899 ThiF family FK728_00284 PF00149 Calcineurin-like phosphoesterase FK728_00290 PF00543 Nitrogen regulatory protein P-II FK728_00291 PF00909 Ammonium Transporter Family FK728_00292 PF03477 ATP cone domain FK728_00293 PF01872 RibD C-terminal domain FK728_00293 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FK728_00295 PF00677 Lumazine binding domain FK728_00299 PF02789 Cytosol aminopeptidase family, N-terminal domain FK728_00299 PF00883 Cytosol aminopeptidase family, catalytic domain FK728_00301 PF03739 Lipopolysaccharide export system permease LptF/LptG FK728_00302 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FK728_00302 PF01676 Metalloenzyme superfamily FK728_00303 PF03572 Peptidase family S41 FK728_00303 PF00595 PDZ domain FK728_00304 PF00072 Response regulator receiver domain FK728_00304 PF00158 Sigma-54 interaction domain FK728_00304 PF02954 Bacterial regulatory protein, Fis family FK728_00305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_00305 PF00512 His Kinase A (phospho-acceptor) domain FK728_00306 PF00072 Response regulator receiver domain FK728_00306 PF00196 Bacterial regulatory proteins, luxR family FK728_00307 PF00768 D-alanyl-D-alanine carboxypeptidase FK728_00308 PF00291 Pyridoxal-phosphate dependent enzyme FK728_00309 PF03447 Homoserine dehydrogenase, NAD binding domain FK728_00309 PF01842 ACT domain FK728_00309 PF00742 Homoserine dehydrogenase FK728_00310 PF10411 Disulfide bond isomerase protein N-terminus FK728_00310 PF13098 Thioredoxin-like domain FK728_00311 PF00589 Phage integrase family FK728_00311 PF02899 Phage integrase, N-terminal SAM-like domain FK728_00313 PF07670 Nucleoside recognition FK728_00313 PF07664 Ferrous iron transport protein B C terminus FK728_00313 PF02421 Ferrous iron transport protein B FK728_00315 PF08245 Mur ligase middle domain FK728_00315 PF02875 Mur ligase family, glutamate ligase domain FK728_00316 PF01098 Cell cycle protein FK728_00317 PF00749 tRNA synthetases class I (E and Q), catalytic domain FK728_00318 PF01258 Prokaryotic dksA/traR C4-type zinc finger FK728_00319 PF00149 Calcineurin-like phosphoesterase FK728_00320 PF00293 NUDIX domain FK728_00321 PF13667 ThiC-associated domain FK728_00321 PF01964 Radical SAM ThiC family FK728_00324 PF00892 EamA-like transporter family FK728_00325 PF02321 Outer membrane efflux protein FK728_00326 PF01895 PhoU domain FK728_00327 PF04362 Bacterial Fe(2+) trafficking FK728_00328 PF14698 Argininosuccinate lyase C-terminal FK728_00328 PF00206 Lyase FK728_00329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_00329 PF06580 Histidine kinase FK728_00329 PF07694 5TMR of 5TMR-LYT FK728_00330 PF00072 Response regulator receiver domain FK728_00330 PF04397 LytTr DNA-binding domain FK728_00331 PF03900 Porphobilinogen deaminase, C-terminal domain FK728_00331 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FK728_00336 PF00816 H-NS histone family FK728_00339 PF00263 Bacterial type II and III secretion system protein FK728_00339 PF03958 Bacterial type II/III secretion system short domain FK728_00340 PF00498 FHA domain FK728_00340 PF12401 Protein of unknown function (DUF2662) FK728_00341 PF13419 Haloacid dehalogenase-like hydrolase FK728_00342 PF00425 chorismate binding enzyme FK728_00342 PF04715 Anthranilate synthase component I, N terminal region FK728_00347 PF00009 Elongation factor Tu GTP binding domain FK728_00347 PF03144 Elongation factor Tu domain 2 FK728_00347 PF03143 Elongation factor Tu C-terminal domain FK728_00349 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FK728_00350 PF02357 Transcription termination factor nusG FK728_00350 PF00467 KOW motif FK728_00351 PF00298 Ribosomal protein L11, RNA binding domain FK728_00351 PF03946 Ribosomal protein L11, N-terminal domain FK728_00352 PF00687 Ribosomal protein L1p/L10e family FK728_00353 PF00466 Ribosomal protein L10 FK728_00354 PF00542 Ribosomal protein L7/L12 C-terminal domain FK728_00354 PF16320 Ribosomal protein L7/L12 dimerisation domain FK728_00355 PF04560 RNA polymerase Rpb2, domain 7 FK728_00355 PF04565 RNA polymerase Rpb2, domain 3 FK728_00355 PF04561 RNA polymerase Rpb2, domain 2 FK728_00355 PF10385 RNA polymerase beta subunit external 1 domain FK728_00355 PF00562 RNA polymerase Rpb2, domain 6 FK728_00355 PF04563 RNA polymerase beta subunit FK728_00356 PF04998 RNA polymerase Rpb1, domain 5 FK728_00356 PF04997 RNA polymerase Rpb1, domain 1 FK728_00356 PF00623 RNA polymerase Rpb1, domain 2 FK728_00356 PF05000 RNA polymerase Rpb1, domain 4 FK728_00356 PF04983 RNA polymerase Rpb1, domain 3 FK728_00361 PF03553 Na+/H+ antiporter family FK728_00361 PF13726 Na+-H+ antiporter family FK728_00364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_00364 PF00183 Hsp90 protein FK728_00367 PF01323 DSBA-like thioredoxin domain FK728_00369 PF00376 MerR family regulatory protein FK728_00369 PF09278 MerR, DNA binding FK728_00373 PF00108 Thiolase, N-terminal domain FK728_00373 PF02803 Thiolase, C-terminal domain FK728_00374 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FK728_00374 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FK728_00374 PF00378 Enoyl-CoA hydratase/isomerase FK728_00378 PF08459 UvrC Helix-hairpin-helix N-terminal FK728_00378 PF02151 UvrB/uvrC motif FK728_00378 PF01541 GIY-YIG catalytic domain FK728_00380 PF01066 CDP-alcohol phosphatidyltransferase FK728_00381 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FK728_00381 PF12833 Helix-turn-helix domain FK728_00381 PF02805 Metal binding domain of Ada FK728_00381 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FK728_00386 PF13533 Biotin-lipoyl like FK728_00387 PF03652 Holliday junction resolvase FK728_00388 PF02622 Uncharacterized ACR, COG1678 FK728_00389 PF02463 RecF/RecN/SMC N terminal domain FK728_00391 PF06865 Pyrimidine/purine nucleoside phosphorylase FK728_00392 PF08032 RNA 2'-O ribose methyltransferase substrate binding FK728_00392 PF00588 SpoU rRNA Methylase family FK728_00394 PF01121 Dephospho-CoA kinase FK728_00395 PF06750 Bacterial Peptidase A24 N-terminal domain FK728_00395 PF01478 Type IV leader peptidase family FK728_00396 PF00482 Type II secretion system (T2SS), protein F FK728_00397 PF00437 Type II/IV secretion system protein FK728_00397 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FK728_00398 PF00121 Triosephosphate isomerase FK728_00399 PF03840 Preprotein translocase SecG subunit FK728_00403 PF02576 RimP N-terminal domain FK728_00403 PF17384 RimP C-terminal SH3 domain FK728_00404 PF13184 NusA-like KH domain FK728_00404 PF08529 NusA N-terminal domain FK728_00404 PF00575 S1 RNA binding domain FK728_00405 PF04760 Translation initiation factor IF-2, N-terminal region FK728_00405 PF11987 Translation-initiation factor 2 FK728_00405 PF00009 Elongation factor Tu GTP binding domain FK728_00405 PF08364 Bacterial translation initiation factor IF-2 associated region FK728_00406 PF02033 Ribosome-binding factor A FK728_00408 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FK728_00410 PF00361 Proton-conducting membrane transporter FK728_00411 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FK728_00412 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FK728_00412 PF00361 Proton-conducting membrane transporter FK728_00412 PF13244 Domain of unknown function (DUF4040) FK728_00412 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FK728_00415 PF01502 Phosphoribosyl-AMP cyclohydrolase FK728_00417 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FK728_00418 PF01494 FAD binding domain FK728_00419 PF03109 ABC1 family FK728_00421 PF01209 ubiE/COQ5 methyltransferase family FK728_00423 PF03976 Polyphosphate kinase 2 (PPK2) FK728_00425 PF17946 RecC C-terminal domain FK728_00426 PF12705 PD-(D/E)XK nuclease superfamily FK728_00426 PF00580 UvrD/REP helicase N-terminal domain FK728_00426 PF13361 UvrD-like helicase C-terminal domain FK728_00427 PF13538 UvrD-like helicase C-terminal domain FK728_00429 PF00312 Ribosomal protein S15 FK728_00430 PF00575 S1 RNA binding domain FK728_00430 PF03725 3' exoribonuclease family, domain 2 FK728_00430 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FK728_00430 PF00013 KH domain FK728_00430 PF01138 3' exoribonuclease family, domain 1 FK728_00431 PF01544 CorA-like Mg2+ transporter protein FK728_00433 PF01556 DnaJ C terminal domain FK728_00433 PF00226 DnaJ domain FK728_00435 PF01430 Hsp33 protein FK728_00436 PF02254 TrkA-N domain FK728_00436 PF00999 Sodium/hydrogen exchanger family FK728_00437 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FK728_00437 PF18074 Primosomal protein N C-terminal domain FK728_00437 PF00270 DEAD/DEAH box helicase FK728_00437 PF17764 3′ DNA-binding domain (3′BD) FK728_00437 PF00271 Helicase conserved C-terminal domain FK728_00438 PF00482 Type II secretion system (T2SS), protein F FK728_00439 PF08334 Type II secretion system (T2SS), protein G FK728_00439 PF07963 Prokaryotic N-terminal methylation motif FK728_00441 PF01588 Putative tRNA binding domain FK728_00442 PF00795 Carbon-nitrogen hydrolase FK728_00443 PF03471 Transporter associated domain FK728_00443 PF00571 CBS domain FK728_00444 PF01206 Sulfurtransferase TusA FK728_00448 PF01177 Asp/Glu/Hydantoin racemase FK728_00450 PF00762 Ferrochelatase FK728_00451 PF00753 Metallo-beta-lactamase superfamily FK728_00452 PF03884 DNA gyrase inhibitor YacG FK728_00456 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FK728_00458 PF01197 Ribosomal protein L31 FK728_00459 PF03109 ABC1 family FK728_00460 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FK728_00460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_00461 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_00461 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FK728_00461 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_00462 PF01554 MatE FK728_00464 PF04055 Radical SAM superfamily FK728_00464 PF06969 HemN C-terminal domain FK728_00465 PF00106 short chain dehydrogenase FK728_00466 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00466 PF03466 LysR substrate binding domain FK728_00469 PF00501 AMP-binding enzyme FK728_00469 PF13193 AMP-binding enzyme C-terminal domain FK728_00470 PF12111 Polyribonucleotide phosphorylase C terminal FK728_00470 PF10150 Ribonuclease E/G family FK728_00470 PF00575 S1 RNA binding domain FK728_00471 PF01479 S4 domain FK728_00471 PF00849 RNA pseudouridylate synthase FK728_00472 PF13419 Haloacid dehalogenase-like hydrolase FK728_00473 PF13280 WYL domain FK728_00473 PF08279 HTH domain FK728_00474 PF02798 Glutathione S-transferase, N-terminal domain FK728_00476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00476 PF03466 LysR substrate binding domain FK728_00477 PF12706 Beta-lactamase superfamily domain FK728_00478 PF00141 Peroxidase FK728_00479 PF02896 PEP-utilising enzyme, TIM barrel domain FK728_00479 PF05524 PEP-utilising enzyme, N-terminal FK728_00479 PF01590 GAF domain FK728_00479 PF00391 PEP-utilising enzyme, mobile domain FK728_00480 PF00293 NUDIX domain FK728_00482 PF03466 LysR substrate binding domain FK728_00482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00484 PF00330 Aconitase family (aconitate hydratase) FK728_00485 PF00694 Aconitase C-terminal domain FK728_00487 PF00180 Isocitrate/isopropylmalate dehydrogenase FK728_00490 PF01176 Translation initiation factor 1A / IF-1 FK728_00492 PF01416 tRNA pseudouridine synthase FK728_00496 PF02774 Semialdehyde dehydrogenase, dimerisation domain FK728_00496 PF01118 Semialdehyde dehydrogenase, NAD binding domain FK728_00498 PF00375 Sodium:dicarboxylate symporter family FK728_00500 PF03279 Bacterial lipid A biosynthesis acyltransferase FK728_00501 PF01810 LysE type translocator FK728_00505 PF00107 Zinc-binding dehydrogenase FK728_00505 PF08240 Alcohol dehydrogenase GroES-like domain FK728_00506 PF01638 HxlR-like helix-turn-helix FK728_00508 PF01131 DNA topoisomerase FK728_00508 PF08272 Topoisomerase I zinc-ribbon-like FK728_00508 PF01751 Toprim domain FK728_00508 PF01396 Topoisomerase DNA binding C4 zinc finger FK728_00511 PF13361 UvrD-like helicase C-terminal domain FK728_00511 PF00580 UvrD/REP helicase N-terminal domain FK728_00512 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FK728_00516 PF00999 Sodium/hydrogen exchanger family FK728_00516 PF02254 TrkA-N domain FK728_00517 PF00471 Ribosomal protein L33 FK728_00518 PF00830 Ribosomal L28 family FK728_00519 PF00171 Aldehyde dehydrogenase family FK728_00521 PF00551 Formyl transferase FK728_00521 PF01842 ACT domain FK728_00523 PF01618 MotA/TolQ/ExbB proton channel family FK728_00525 PF01625 Peptide methionine sulfoxide reductase FK728_00527 PF00186 Dihydrofolate reductase FK728_00528 PF00303 Thymidylate synthase FK728_00531 PF01790 Prolipoprotein diacylglyceryl transferase FK728_00535 PF00902 Sec-independent protein translocase protein (TatC) FK728_00536 PF02416 mttA/Hcf106 family FK728_00537 PF02416 mttA/Hcf106 family FK728_00539 PF01725 Ham1 family FK728_00541 PF07021 Methionine biosynthesis protein MetW FK728_00541 PF00561 alpha/beta hydrolase fold FK728_00542 PF00561 alpha/beta hydrolase fold FK728_00543 PF08502 LeuA allosteric (dimerisation) domain FK728_00543 PF00682 HMGL-like FK728_00544 PF18331 PKHD-type hydroxylase C-terminal domain FK728_00544 PF13640 2OG-Fe(II) oxygenase superfamily FK728_00545 PF00593 TonB dependent receptor FK728_00545 PF07715 TonB-dependent Receptor Plug Domain FK728_00546 PF05697 Bacterial trigger factor protein (TF) FK728_00546 PF05698 Bacterial trigger factor protein (TF) C-terminus FK728_00546 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK728_00547 PF00574 Clp protease FK728_00548 PF07724 AAA domain (Cdc48 subfamily) FK728_00548 PF06689 ClpX C4-type zinc finger FK728_00548 PF10431 C-terminal, D2-small domain, of ClpB protein FK728_00551 PF05681 Fumarate hydratase (Fumerase) FK728_00551 PF05683 Fumarase C-terminus FK728_00552 PF01515 Phosphate acetyl/butaryl transferase FK728_00552 PF07085 DRTGG domain FK728_00553 PF00871 Acetokinase family FK728_00554 PF00920 Dehydratase family FK728_00555 PF01081 KDPG and KHG aldolase FK728_00556 PF02447 GntP family permease FK728_00557 PF01202 Shikimate kinase FK728_00558 PF00171 Aldehyde dehydrogenase family FK728_00559 PF00171 Aldehyde dehydrogenase family FK728_00560 PF00561 alpha/beta hydrolase fold FK728_00562 PF00933 Glycosyl hydrolase family 3 N terminal domain FK728_00563 PF03572 Peptidase family S41 FK728_00563 PF00595 PDZ domain FK728_00563 PF17804 Tail specific protease N-terminal domain FK728_00563 PF11818 C-terminal domain of tail specific protease (DUF3340) FK728_00564 PF00534 Glycosyl transferases group 1 FK728_00564 PF13439 Glycosyltransferase Family 4 FK728_00565 PF01569 PAP2 superfamily FK728_00566 PF04384 Iron-sulphur cluster assembly FK728_00567 PF00334 Nucleoside diphosphate kinase FK728_00568 PF04055 Radical SAM superfamily FK728_00570 PF13464 Domain of unknown function (DUF4115) FK728_00571 PF04551 GcpE protein FK728_00572 PF03129 Anticodon binding domain FK728_00572 PF13393 Histidyl-tRNA synthetase FK728_00574 PF13360 PQQ-like domain FK728_00575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FK728_00575 PF01926 50S ribosome-binding GTPase FK728_00577 PF02556 Preprotein translocase subunit SecB FK728_00578 PF00462 Glutaredoxin FK728_00580 PF03193 RsgA GTPase FK728_00581 PF00929 Exonuclease FK728_00584 PF02321 Outer membrane efflux protein FK728_00585 PF12704 MacB-like periplasmic core domain FK728_00585 PF00005 ABC transporter FK728_00585 PF02687 FtsX-like permease family FK728_00586 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_00589 PF13603 Leucyl-tRNA synthetase, Domain 2 FK728_00589 PF09334 tRNA synthetases class I (M) FK728_00589 PF08264 Anticodon-binding domain of tRNA FK728_00589 PF00133 tRNA synthetases class I (I, L, M and V) FK728_00591 PF00205 Thiamine pyrophosphate enzyme, central domain FK728_00591 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FK728_00591 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FK728_00592 PF10369 Small subunit of acetolactate synthase FK728_00593 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FK728_00593 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FK728_00594 PF00563 EAL domain FK728_00594 PF00990 Diguanylate cyclase, GGDEF domain FK728_00594 PF03707 Bacterial signalling protein N terminal repeat FK728_00598 PF16658 Class II release factor RF3, C-terminal domain FK728_00598 PF03144 Elongation factor Tu domain 2 FK728_00598 PF00009 Elongation factor Tu GTP binding domain FK728_00601 PF01026 TatD related DNase FK728_00602 PF00694 Aconitase C-terminal domain FK728_00602 PF00330 Aconitase family (aconitate hydratase) FK728_00604 PF00899 ThiF family FK728_00605 PF03466 LysR substrate binding domain FK728_00605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00607 PF01207 Dihydrouridine synthase (Dus) FK728_00608 PF07690 Major Facilitator Superfamily FK728_00610 PF00892 EamA-like transporter family FK728_00611 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FK728_00611 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FK728_00612 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FK728_00613 PF02233 NAD(P) transhydrogenase beta subunit FK728_00614 PF00106 short chain dehydrogenase FK728_00616 PF01261 Xylose isomerase-like TIM barrel FK728_00617 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FK728_00617 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FK728_00618 PF00378 Enoyl-CoA hydratase/isomerase FK728_00619 PF00672 HAMP domain FK728_00619 PF01627 Hpt domain FK728_00619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_00619 PF00072 Response regulator receiver domain FK728_00619 PF00512 His Kinase A (phospho-acceptor) domain FK728_00619 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FK728_00620 PF00291 Pyridoxal-phosphate dependent enzyme FK728_00622 PF05958 tRNA (Uracil-5-)-methyltransferase FK728_00623 PF02824 TGS domain FK728_00623 PF04607 Region found in RelA / SpoT proteins FK728_00623 PF13291 ACT domain FK728_00625 PF03819 MazG nucleotide pyrophosphohydrolase domain FK728_00627 PF01743 Poly A polymerase head domain FK728_00627 PF12626 Polymerase A arginine-rich C-terminus FK728_00627 PF12627 Probable RNA and SrmB- binding site of polymerase A FK728_00628 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FK728_00629 PF02548 Ketopantoate hydroxymethyltransferase FK728_00630 PF02569 Pantoate-beta-alanine ligase FK728_00631 PF03668 P-loop ATPase protein family FK728_00632 PF00381 PTS HPr component phosphorylation site FK728_00633 PF04751 Protein of unknown function (DUF615) FK728_00634 PF13193 AMP-binding enzyme C-terminal domain FK728_00634 PF00501 AMP-binding enzyme FK728_00635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FK728_00635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FK728_00635 PF03129 Anticodon binding domain FK728_00635 PF02824 TGS domain FK728_00636 PF05198 Translation initiation factor IF-3, N-terminal domain FK728_00636 PF00707 Translation initiation factor IF-3, C-terminal domain FK728_00637 PF00043 Glutathione S-transferase, C-terminal domain FK728_00637 PF02798 Glutathione S-transferase, N-terminal domain FK728_00638 PF09335 SNARE associated Golgi protein FK728_00639 PF07690 Major Facilitator Superfamily FK728_00640 PF01632 Ribosomal protein L35 FK728_00641 PF00453 Ribosomal protein L20 FK728_00645 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FK728_00645 PF01409 tRNA synthetases class II core domain (F) FK728_00646 PF03483 B3/4 domain FK728_00646 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FK728_00646 PF03147 Ferredoxin-fold anticodon binding domain FK728_00646 PF01588 Putative tRNA binding domain FK728_00646 PF03484 tRNA synthetase B5 domain FK728_00647 PF00216 Bacterial DNA-binding protein FK728_00649 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FK728_00649 PF07497 Rho termination factor, RNA-binding domain FK728_00649 PF07498 Rho termination factor, N-terminal domain FK728_00650 PF00085 Thioredoxin FK728_00651 PF02541 Ppx/GppA phosphatase family FK728_00652 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FK728_00653 PF09179 TilS substrate binding domain FK728_00653 PF01171 PP-loop family FK728_00653 PF11734 TilS substrate C-terminal domain FK728_00654 PF03807 NADP oxidoreductase coenzyme F420-dependent FK728_00654 PF14748 Pyrroline-5-carboxylate reductase dimerisation FK728_00655 PF02325 YGGT family FK728_00656 PF01612 3'-5' exonuclease FK728_00656 PF00476 DNA polymerase family A FK728_00656 PF01367 5'-3' exonuclease, C-terminal SAM fold FK728_00656 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FK728_00660 PF00437 Type II/IV secretion system protein FK728_00661 PF02566 OsmC-like protein FK728_00662 PF01047 MarR family FK728_00664 PF00795 Carbon-nitrogen hydrolase FK728_00673 PF00309 Sigma-54 factor, Activator interacting domain (AID) FK728_00673 PF04552 Sigma-54, DNA binding domain FK728_00673 PF04963 Sigma-54 factor, core binding domain FK728_00674 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FK728_00675 PF01722 BolA-like protein FK728_00676 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FK728_00677 PF01634 ATP phosphoribosyltransferase FK728_00678 PF00815 Histidinol dehydrogenase FK728_00679 PF00155 Aminotransferase class I and II FK728_00680 PF00425 chorismate binding enzyme FK728_00680 PF04715 Anthranilate synthase component I, N terminal region FK728_00688 PF00293 NUDIX domain FK728_00689 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_00690 PF00814 Glycoprotease family FK728_00691 PF04445 Putative SAM-dependent methyltransferase FK728_00693 PF00756 Putative esterase FK728_00695 PF00834 Ribulose-phosphate 3 epimerase family FK728_00698 PF07731 Multicopper oxidase FK728_00698 PF00394 Multicopper oxidase FK728_00698 PF07732 Multicopper oxidase FK728_00701 PF00893 Small Multidrug Resistance protein FK728_00702 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FK728_00702 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FK728_00703 PF01960 ArgJ family FK728_00704 PF02445 Quinolinate synthetase A protein FK728_00709 PF00962 Adenosine/AMP deaminase FK728_00710 PF00107 Zinc-binding dehydrogenase FK728_00710 PF08240 Alcohol dehydrogenase GroES-like domain FK728_00711 PF03466 LysR substrate binding domain FK728_00711 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00712 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_00712 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_00712 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_00713 PF07690 Major Facilitator Superfamily FK728_00714 PF02515 CoA-transferase family III FK728_00716 PF00890 FAD binding domain FK728_00716 PF14537 Cytochrome c3 FK728_00717 PF03466 LysR substrate binding domain FK728_00717 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00719 PF07690 Major Facilitator Superfamily FK728_00720 PF03466 LysR substrate binding domain FK728_00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00722 PF01546 Peptidase family M20/M25/M40 FK728_00722 PF07687 Peptidase dimerisation domain FK728_00723 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FK728_00723 PF12833 Helix-turn-helix domain FK728_00725 PF01810 LysE type translocator FK728_00726 PF03466 LysR substrate binding domain FK728_00726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00728 PF08267 Cobalamin-independent synthase, N-terminal domain FK728_00728 PF01717 Cobalamin-independent synthase, Catalytic domain FK728_00729 PF01613 Flavin reductase like domain FK728_00736 PF17074 Darcynin, domain of unknown function FK728_00744 PF13361 UvrD-like helicase C-terminal domain FK728_00744 PF00580 UvrD/REP helicase N-terminal domain FK728_00757 PF00268 Ribonucleotide reductase, small chain FK728_00759 PF00317 Ribonucleotide reductase, all-alpha domain FK728_00759 PF02867 Ribonucleotide reductase, barrel domain FK728_00759 PF03477 ATP cone domain FK728_00760 PF00486 Transcriptional regulatory protein, C terminal FK728_00760 PF00072 Response regulator receiver domain FK728_00761 PF00512 His Kinase A (phospho-acceptor) domain FK728_00761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_00761 PF00672 HAMP domain FK728_00763 PF17151 Periplasmic sensor domain FK728_00763 PF00990 Diguanylate cyclase, GGDEF domain FK728_00764 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FK728_00765 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FK728_00766 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FK728_00766 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FK728_00768 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FK728_00768 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FK728_00768 PF10531 SLBB domain FK728_00769 PF00384 Molybdopterin oxidoreductase FK728_00769 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FK728_00769 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FK728_00770 PF00146 NADH dehydrogenase FK728_00771 PF12838 4Fe-4S dicluster domain FK728_00772 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FK728_00773 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FK728_00774 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FK728_00774 PF00361 Proton-conducting membrane transporter FK728_00775 PF00361 Proton-conducting membrane transporter FK728_00776 PF00361 Proton-conducting membrane transporter FK728_00778 PF00313 'Cold-shock' DNA-binding domain FK728_00780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00780 PF03466 LysR substrate binding domain FK728_00781 PF00970 Oxidoreductase FAD-binding domain FK728_00781 PF00175 Oxidoreductase NAD-binding domain FK728_00784 PF05552 Conserved TM helix FK728_00787 PF00291 Pyridoxal-phosphate dependent enzyme FK728_00788 PF13533 Biotin-lipoyl like FK728_00793 PF01588 Putative tRNA binding domain FK728_00793 PF09334 tRNA synthetases class I (M) FK728_00795 PF10609 NUBPL iron-transfer P-loop NTPase FK728_00796 PF01048 Phosphorylase superfamily FK728_00799 PF00692 dUTPase FK728_00806 PF01207 Dihydrouridine synthase (Dus) FK728_00808 PF02978 Signal peptide binding domain FK728_00808 PF02881 SRP54-type protein, helical bundle domain FK728_00808 PF00448 SRP54-type protein, GTPase domain FK728_00809 PF03309 Type III pantothenate kinase FK728_00811 PF01925 Sulfite exporter TauE/SafE FK728_00813 PF06470 SMC proteins Flexible Hinge Domain FK728_00813 PF02463 RecF/RecN/SMC N terminal domain FK728_00815 PF03120 NAD-dependent DNA ligase OB-fold domain FK728_00815 PF01653 NAD-dependent DNA ligase adenylation domain FK728_00815 PF00533 BRCA1 C Terminus (BRCT) domain FK728_00815 PF12826 Helix-hairpin-helix motif FK728_00815 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FK728_00816 PF00210 Ferritin-like domain FK728_00817 PF07690 Major Facilitator Superfamily FK728_00818 PF00982 Glycosyltransferase family 20 FK728_00819 PF02358 Trehalose-phosphatase FK728_00820 PF08241 Methyltransferase domain FK728_00820 PF12697 Alpha/beta hydrolase family FK728_00821 PF06968 Biotin and Thiamin Synthesis associated domain FK728_00821 PF00202 Aminotransferase class-III FK728_00821 PF04055 Radical SAM superfamily FK728_00822 PF00155 Aminotransferase class I and II FK728_00825 PF00849 RNA pseudouridylate synthase FK728_00825 PF01479 S4 domain FK728_00826 PF04079 Segregation and condensation complex subunit ScpB FK728_00827 PF02616 Segregation and condensation protein ScpA FK728_00828 PF01300 Telomere recombination FK728_00829 PF04315 Elongation factor P hydroxylase FK728_00830 PF02620 Large ribosomal RNA subunit accumulation protein YceD FK728_00831 PF01783 Ribosomal L32p protein family FK728_00832 PF00698 Acyl transferase domain FK728_00834 PF00550 Phosphopantetheine attachment site FK728_00835 PF01476 LysM domain FK728_00835 PF04972 BON domain FK728_00836 PF08543 Phosphomethylpyrimidine kinase FK728_00836 PF03070 TENA/THI-4/PQQC family FK728_00836 PF02581 Thiamine monophosphate synthase FK728_00838 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FK728_00841 PF02261 Aspartate decarboxylase FK728_00842 PF01195 Peptidyl-tRNA hydrolase FK728_00843 PF01386 Ribosomal L25p family FK728_00844 PF14572 Phosphoribosyl synthetase-associated domain FK728_00844 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FK728_00849 PF03550 Outer membrane lipoprotein LolB FK728_00851 PF01488 Shikimate / quinate 5-dehydrogenase FK728_00851 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FK728_00851 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FK728_00852 PF01807 CHC2 zinc finger FK728_00852 PF10410 DnaB-helicase binding domain of primase FK728_00852 PF08275 DNA primase catalytic core, N-terminal domain FK728_00852 PF08278 DNA primase DnaG DnaB-binding FK728_00853 PF13525 Outer membrane lipoprotein FK728_00854 PF01479 S4 domain FK728_00854 PF00849 RNA pseudouridylate synthase FK728_00856 PF03358 NADPH-dependent FMN reductase FK728_00857 PF01668 SmpB protein FK728_00858 PF01467 Cytidylyltransferase-like FK728_00859 PF00037 4Fe-4S binding domain FK728_00862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00862 PF03466 LysR substrate binding domain FK728_00863 PF00180 Isocitrate/isopropylmalate dehydrogenase FK728_00864 PF02028 BCCT, betaine/carnitine/choline family transporter FK728_00865 PF07859 alpha/beta hydrolase fold FK728_00866 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FK728_00866 PF00355 Rieske [2Fe-2S] domain FK728_00867 PF00171 Aldehyde dehydrogenase family FK728_00868 PF00175 Oxidoreductase NAD-binding domain FK728_00868 PF00111 2Fe-2S iron-sulfur cluster binding domain FK728_00868 PF00970 Oxidoreductase FAD-binding domain FK728_00871 PF02540 NAD synthase FK728_00871 PF00795 Carbon-nitrogen hydrolase FK728_00873 PF05726 Pirin C-terminal cupin domain FK728_00873 PF02678 Pirin FK728_00875 PF02801 Beta-ketoacyl synthase, C-terminal domain FK728_00875 PF00109 Beta-ketoacyl synthase, N-terminal domain FK728_00877 PF00164 Ribosomal protein S12/S23 FK728_00878 PF00177 Ribosomal protein S7p/S5e FK728_00879 PF00679 Elongation factor G C-terminus FK728_00879 PF14492 Elongation Factor G, domain II FK728_00879 PF03764 Elongation factor G, domain IV FK728_00879 PF03144 Elongation factor Tu domain 2 FK728_00879 PF00009 Elongation factor Tu GTP binding domain FK728_00880 PF03144 Elongation factor Tu domain 2 FK728_00880 PF00009 Elongation factor Tu GTP binding domain FK728_00880 PF03143 Elongation factor Tu C-terminal domain FK728_00883 PF00583 Acetyltransferase (GNAT) family FK728_00884 PF04376 Arginine-tRNA-protein transferase, N terminus FK728_00884 PF04377 Arginine-tRNA-protein transferase, C terminus FK728_00885 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FK728_00886 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_00887 PF01580 FtsK/SpoIIIE family FK728_00887 PF17854 FtsK alpha domain FK728_00887 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FK728_00887 PF09397 Ftsk gamma domain FK728_00888 PF01810 LysE type translocator FK728_00890 PF03776 Septum formation topological specificity factor MinE FK728_00891 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FK728_00892 PF03775 Septum formation inhibitor MinC, C-terminal domain FK728_00894 PF01553 Acyltransferase FK728_00895 PF13488 Glycine zipper FK728_00895 PF00691 OmpA family FK728_00896 PF13361 UvrD-like helicase C-terminal domain FK728_00896 PF00580 UvrD/REP helicase N-terminal domain FK728_00897 PF00692 dUTPase FK728_00898 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FK728_00898 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FK728_00898 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FK728_00898 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FK728_00899 PF00696 Amino acid kinase family FK728_00901 PF13230 Glutamine amidotransferases class-II FK728_00902 PF01814 Hemerythrin HHE cation binding domain FK728_00904 PF03658 RnfH family Ubiquitin FK728_00905 PF04355 SmpA / OmlA family FK728_00906 PF01475 Ferric uptake regulator family FK728_00907 PF00437 Type II/IV secretion system protein FK728_00908 PF00437 Type II/IV secretion system protein FK728_00909 PF01168 Alanine racemase, N-terminal domain FK728_00911 PF12320 Type 5 capsule protein repressor C-terminal domain FK728_00911 PF00149 Calcineurin-like phosphoesterase FK728_00915 PF08338 Domain of unknown function (DUF1731) FK728_00915 PF01370 NAD dependent epimerase/dehydratase family FK728_00916 PF01266 FAD dependent oxidoreductase FK728_00917 PF00490 Delta-aminolevulinic acid dehydratase FK728_00918 PF03061 Thioesterase superfamily FK728_00919 PF00529 HlyD membrane-fusion protein of T1SS FK728_00919 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_00920 PF07690 Major Facilitator Superfamily FK728_00923 PF18019 HD domain FK728_00934 PF00083 Sugar (and other) transporter FK728_00935 PF00701 Dihydrodipicolinate synthetase family FK728_00940 PF13520 Amino acid permease FK728_00941 PF02574 Homocysteine S-methyltransferase FK728_00943 PF06039 Malate:quinone oxidoreductase (Mqo) FK728_00944 PF00732 GMC oxidoreductase FK728_00944 PF05199 GMC oxidoreductase FK728_00945 PF00171 Aldehyde dehydrogenase family FK728_00946 PF13977 BetI-type transcriptional repressor, C-terminal FK728_00946 PF00440 Bacterial regulatory proteins, tetR family FK728_00947 PF02028 BCCT, betaine/carnitine/choline family transporter FK728_00948 PF02028 BCCT, betaine/carnitine/choline family transporter FK728_00950 PF03061 Thioesterase superfamily FK728_00952 PF07683 Cobalamin synthesis protein cobW C-terminal domain FK728_00952 PF02492 CobW/HypB/UreG, nucleotide-binding domain FK728_00953 PF00375 Sodium:dicarboxylate symporter family FK728_00954 PF07152 YaeQ protein FK728_00955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK728_00956 PF14883 Hypothetical glycosyl hydrolase family 13 FK728_00956 PF01522 Polysaccharide deacetylase FK728_00957 PF00535 Glycosyl transferase family 2 FK728_00959 PF00378 Enoyl-CoA hydratase/isomerase FK728_00962 PF09339 IclR helix-turn-helix domain FK728_00962 PF01614 Bacterial transcriptional regulator FK728_00963 PF00355 Rieske [2Fe-2S] domain FK728_00965 PF00355 Rieske [2Fe-2S] domain FK728_00967 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FK728_00968 PF14759 Reductase C-terminal FK728_00968 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_00969 PF07690 Major Facilitator Superfamily FK728_00971 PF12697 Alpha/beta hydrolase family FK728_00973 PF01958 Domain of unknown function DUF108 FK728_00973 PF03447 Homoserine dehydrogenase, NAD binding domain FK728_00974 PF00171 Aldehyde dehydrogenase family FK728_00975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FK728_00975 PF00205 Thiamine pyrophosphate enzyme, central domain FK728_00975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FK728_00977 PF07690 Major Facilitator Superfamily FK728_00978 PF01327 Polypeptide deformylase FK728_00979 PF04960 Glutaminase FK728_00980 PF12833 Helix-turn-helix domain FK728_00980 PF02311 AraC-like ligand binding domain FK728_00981 PF07690 Major Facilitator Superfamily FK728_00982 PF01263 Aldose 1-epimerase FK728_00984 PF03466 LysR substrate binding domain FK728_00984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_00986 PF07690 Major Facilitator Superfamily FK728_00987 PF00456 Transketolase, thiamine diphosphate binding domain FK728_00988 PF02779 Transketolase, pyrimidine binding domain FK728_00988 PF02780 Transketolase, C-terminal domain FK728_00989 PF02574 Homocysteine S-methyltransferase FK728_00989 PF02607 B12 binding domain FK728_00989 PF02965 Vitamin B12 dependent methionine synthase, activation domain FK728_00989 PF02310 B12 binding domain FK728_00989 PF00809 Pterin binding enzyme FK728_00990 PF01384 Phosphate transporter family FK728_00991 PF00291 Pyridoxal-phosphate dependent enzyme FK728_00994 PF03781 Sulfatase-modifying factor enzyme 1 FK728_00995 PF00884 Sulfatase FK728_00997 PF01521 Iron-sulphur cluster biosynthesis FK728_00997 PF01106 NifU-like domain FK728_00998 PF00593 TonB dependent receptor FK728_00998 PF07715 TonB-dependent Receptor Plug Domain FK728_01000 PF00561 alpha/beta hydrolase fold FK728_01001 PF00484 Carbonic anhydrase FK728_01002 PF13472 GDSL-like Lipase/Acylhydrolase family FK728_01003 PF00005 ABC transporter FK728_01005 PF01694 Rhomboid family FK728_01006 PF00912 Transglycosylase FK728_01007 PF13090 Polyphosphate kinase C-terminal domain 2 FK728_01007 PF17941 Polyphosphate kinase C-terminal domain 1 FK728_01007 PF02503 Polyphosphate kinase middle domain FK728_01007 PF13089 Polyphosphate kinase N-terminal domain FK728_01009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01009 PF03466 LysR substrate binding domain FK728_01010 PF00561 alpha/beta hydrolase fold FK728_01011 PF18113 Rubredoxin binding C-terminal domain FK728_01011 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_01012 PF00301 Rubredoxin FK728_01015 PF00152 tRNA synthetases class II (D, K and N) FK728_01015 PF01336 OB-fold nucleic acid binding domain FK728_01016 PF14052 Capsule assembly protein Wzi FK728_01018 PF01507 Phosphoadenosine phosphosulfate reductase family FK728_01019 PF00009 Elongation factor Tu GTP binding domain FK728_01022 PF03600 Citrate transporter FK728_01023 PF03471 Transporter associated domain FK728_01023 PF00571 CBS domain FK728_01023 PF01595 Cyclin M transmembrane N-terminal domain FK728_01024 PF03466 LysR substrate binding domain FK728_01024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01025 PF00463 Isocitrate lyase family FK728_01028 PF01774 UreD urease accessory protein FK728_01029 PF00547 Urease, gamma subunit FK728_01030 PF00699 Urease beta subunit FK728_01031 PF00449 Urease alpha-subunit, N-terminal domain FK728_01031 PF01979 Amidohydrolase family FK728_01032 PF02814 UreE urease accessory protein, N-terminal domain FK728_01032 PF05194 UreE urease accessory protein, C-terminal domain FK728_01033 PF01730 UreF FK728_01034 PF02492 CobW/HypB/UreG, nucleotide-binding domain FK728_01037 PF00905 Penicillin binding protein transpeptidase domain FK728_01037 PF03717 Penicillin-binding Protein dimerisation domain FK728_01040 PF05191 Adenylate kinase, active site lid FK728_01041 PF10576 Iron-sulfur binding domain of endonuclease III FK728_01041 PF00633 Helix-hairpin-helix motif FK728_01041 PF00730 HhH-GPD superfamily base excision DNA repair protein FK728_01042 PF04060 Putative Fe-S cluster FK728_01043 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FK728_01043 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FK728_01045 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FK728_01046 PF02590 Predicted SPOUT methyltransferase FK728_01047 PF00004 ATPase family associated with various cellular activities (AAA) FK728_01047 PF02190 ATP-dependent protease La (LON) substrate-binding domain FK728_01047 PF05362 Lon protease (S16) C-terminal proteolytic domain FK728_01048 PF05662 Coiled stalk of trimeric autotransporter adhesin FK728_01048 PF13018 Extended Signal Peptide of Type V secretion system FK728_01048 PF03895 YadA-like membrane anchor domain FK728_01048 PF05658 Head domain of trimeric autotransporter adhesin FK728_01049 PF03895 YadA-like membrane anchor domain FK728_01049 PF05658 Head domain of trimeric autotransporter adhesin FK728_01049 PF13018 Extended Signal Peptide of Type V secretion system FK728_01049 PF05662 Coiled stalk of trimeric autotransporter adhesin FK728_01051 PF01812 5-formyltetrahydrofolate cyclo-ligase family FK728_01081 PF13737 Transposase DDE domain FK728_01096 PF00665 Integrase core domain FK728_01096 PF13333 Integrase core domain FK728_01096 PF13276 HTH-like domain FK728_01105 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system FK728_01124 PF13953 PapC C-terminal domain FK728_01124 PF13954 PapC N-terminal domain FK728_01124 PF00577 Outer membrane usher protein FK728_01133 PF05195 Aminopeptidase P, N-terminal domain FK728_01133 PF00557 Metallopeptidase family M24 FK728_01134 PF01494 FAD binding domain FK728_01135 PF01494 FAD binding domain FK728_01137 PF13411 MerR HTH family regulatory protein FK728_01139 PF01810 LysE type translocator FK728_01140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01140 PF03466 LysR substrate binding domain FK728_01142 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FK728_01143 PF02021 Uncharacterised protein family UPF0102 FK728_01144 PF04972 BON domain FK728_01146 PF00293 NUDIX domain FK728_01146 PF09297 NADH pyrophosphatase zinc ribbon domain FK728_01148 PF00929 Exonuclease FK728_01149 PF01476 LysM domain FK728_01149 PF01476 LysM domain FK728_01149 PF01464 Transglycosylase SLT domain FK728_01149 PF01464 Transglycosylase SLT domain FK728_01150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FK728_01151 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01152 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01152 PF12911 N-terminal TM domain of oligopeptide transport permease C FK728_01153 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FK728_01153 PF00005 ABC transporter FK728_01154 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK728_01154 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_01155 PF07715 TonB-dependent Receptor Plug Domain FK728_01155 PF00593 TonB dependent receptor FK728_01158 PF00929 Exonuclease FK728_01159 PF01979 Amidohydrolase family FK728_01160 PF01590 GAF domain FK728_01160 PF00990 Diguanylate cyclase, GGDEF domain FK728_01160 PF00360 Phytochrome region FK728_01160 PF00563 EAL domain FK728_01161 PF00764 Arginosuccinate synthase FK728_01162 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_01162 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK728_01164 PF13356 Arm DNA-binding domain FK728_01164 PF00589 Phage integrase family FK728_01180 PF00529 HlyD membrane-fusion protein of T1SS FK728_01180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_01181 PF00873 AcrB/AcrD/AcrF family FK728_01185 PF07690 Major Facilitator Superfamily FK728_01189 PF01545 Cation efflux family FK728_01189 PF16916 Dimerisation domain of Zinc Transporter FK728_01191 PF13333 Integrase core domain FK728_01191 PF00665 Integrase core domain FK728_01191 PF13276 HTH-like domain FK728_01192 PF14864 Alkyl sulfatase C-terminal FK728_01192 PF14863 Alkyl sulfatase dimerisation FK728_01192 PF00753 Metallo-beta-lactamase superfamily FK728_01194 PF13333 Integrase core domain FK728_01194 PF00665 Integrase core domain FK728_01194 PF13276 HTH-like domain FK728_01195 PF02417 Chromate transporter FK728_01196 PF09828 Chromate resistance exported protein FK728_01200 PF03180 NLPA lipoprotein FK728_01202 PF16671 Actin cross-linking domain FK728_01202 PF04717 Type VI secretion system, phage-baseplate injector FK728_01203 PF03527 RHS protein FK728_01203 PF05593 RHS Repeat FK728_01205 PF13007 Transposase C of IS166 homeodomain FK728_01205 PF03050 Transposase IS66 family FK728_01205 PF13005 zinc-finger binding domain of transposase IS66 FK728_01205 PF13817 IS66 C-terminal element FK728_01210 PF00324 Amino acid permease FK728_01211 PF01266 FAD dependent oxidoreductase FK728_01212 PF00324 Amino acid permease FK728_01214 PF00392 Bacterial regulatory proteins, gntR family FK728_01214 PF07729 FCD domain FK728_01216 PF00171 Aldehyde dehydrogenase family FK728_01218 PF00202 Aminotransferase class-III FK728_01219 PF04958 Arginine N-succinyltransferase beta subunit FK728_01220 PF00324 Amino acid permease FK728_01221 PF00171 Aldehyde dehydrogenase family FK728_01222 PF12833 Helix-turn-helix domain FK728_01222 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FK728_01223 PF00892 EamA-like transporter family FK728_01224 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus FK728_01224 PF08666 SAF domain FK728_01225 PF07690 Major Facilitator Superfamily FK728_01226 PF13378 Enolase C-terminal domain-like FK728_01227 PF00701 Dihydrodipicolinate synthetase family FK728_01228 PF00171 Aldehyde dehydrogenase family FK728_01229 PF00392 Bacterial regulatory proteins, gntR family FK728_01229 PF07729 FCD domain FK728_01230 PF07519 Tannase and feruloyl esterase FK728_01233 PF03573 outer membrane porin, OprD family FK728_01234 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01234 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01234 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_01236 PF00171 Aldehyde dehydrogenase family FK728_01237 PF00378 Enoyl-CoA hydratase/isomerase FK728_01238 PF07690 Major Facilitator Superfamily FK728_01241 PF00175 Oxidoreductase NAD-binding domain FK728_01241 PF00111 2Fe-2S iron-sulfur cluster binding domain FK728_01242 PF00355 Rieske [2Fe-2S] domain FK728_01244 PF03781 Sulfatase-modifying factor enzyme 1 FK728_01245 PF00884 Sulfatase FK728_01246 PF07690 Major Facilitator Superfamily FK728_01247 PF03573 outer membrane porin, OprD family FK728_01248 PF05199 GMC oxidoreductase FK728_01249 PF07859 alpha/beta hydrolase fold FK728_01250 PF00106 short chain dehydrogenase FK728_01251 PF00743 Flavin-binding monooxygenase-like FK728_01252 PF12833 Helix-turn-helix domain FK728_01253 PF05683 Fumarase C-terminus FK728_01254 PF05681 Fumarate hydratase (Fumerase) FK728_01255 PF07690 Major Facilitator Superfamily FK728_01256 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01256 PF03466 LysR substrate binding domain FK728_01257 PF04072 Leucine carboxyl methyltransferase FK728_01258 PF00743 Flavin-binding monooxygenase-like FK728_01259 PF00106 short chain dehydrogenase FK728_01261 PF17932 Tetracyclin repressor-like, C-terminal domain FK728_01261 PF00440 Bacterial regulatory proteins, tetR family FK728_01262 PF17954 Quercetinase C-terminal cupin domain FK728_01262 PF02678 Pirin FK728_01264 PF00106 short chain dehydrogenase FK728_01265 PF00743 Flavin-binding monooxygenase-like FK728_01267 PF13276 HTH-like domain FK728_01267 PF13333 Integrase core domain FK728_01267 PF00665 Integrase core domain FK728_01269 PF00860 Permease family FK728_01270 PF00962 Adenosine/AMP deaminase FK728_01271 PF01292 Prokaryotic cytochrome b561 FK728_01273 PF01351 Ribonuclease HII FK728_01274 PF02599 Global regulator protein family FK728_01275 PF13840 ACT domain FK728_01275 PF01842 ACT domain FK728_01275 PF00696 Amino acid kinase family FK728_01276 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FK728_01276 PF01411 tRNA synthetases class II (A) FK728_01276 PF02272 DHHA1 domain FK728_01277 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FK728_01277 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FK728_01278 PF13393 Histidyl-tRNA synthetase FK728_01279 PF00709 Adenylosuccinate synthetase FK728_01282 PF00248 Aldo/keto reductase family FK728_01283 PF13545 Crp-like helix-turn-helix domain FK728_01283 PF00027 Cyclic nucleotide-binding domain FK728_01284 PF02566 OsmC-like protein FK728_01287 PF02861 Clp amino terminal domain, pathogenicity island component FK728_01287 PF00004 ATPase family associated with various cellular activities (AAA) FK728_01287 PF07724 AAA domain (Cdc48 subfamily) FK728_01287 PF17871 AAA lid domain FK728_01287 PF10431 C-terminal, D2-small domain, of ClpB protein FK728_01290 PF10672 S-adenosylmethionine-dependent methyltransferase FK728_01290 PF02926 THUMP domain FK728_01290 PF01170 Putative RNA methylase family UPF0020 FK728_01292 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FK728_01292 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FK728_01293 PF01979 Amidohydrolase family FK728_01294 PF00691 OmpA family FK728_01294 PF13488 Glycine zipper FK728_01296 PF00043 Glutathione S-transferase, C-terminal domain FK728_01296 PF13417 Glutathione S-transferase, N-terminal domain FK728_01297 PF02390 Putative methyltransferase FK728_01299 PF02798 Glutathione S-transferase, N-terminal domain FK728_01299 PF00043 Glutathione S-transferase, C-terminal domain FK728_01301 PF13192 Thioredoxin domain FK728_01301 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_01305 PF10417 C-terminal domain of 1-Cys peroxiredoxin FK728_01305 PF00578 AhpC/TSA family FK728_01306 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FK728_01306 PF00270 DEAD/DEAH box helicase FK728_01306 PF00271 Helicase conserved C-terminal domain FK728_01306 PF04408 Helicase associated domain (HA2) FK728_01306 PF11898 Domain of unknown function (DUF3418) FK728_01307 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FK728_01307 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FK728_01309 PF07690 Major Facilitator Superfamily FK728_01310 PF03594 Benzoate membrane transport protein FK728_01311 PF00106 short chain dehydrogenase FK728_01312 PF00111 2Fe-2S iron-sulfur cluster binding domain FK728_01312 PF00175 Oxidoreductase NAD-binding domain FK728_01312 PF00970 Oxidoreductase FAD-binding domain FK728_01313 PF00866 Ring hydroxylating beta subunit FK728_01314 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FK728_01314 PF00355 Rieske [2Fe-2S] domain FK728_01315 PF03466 LysR substrate binding domain FK728_01315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01317 PF00403 Heavy-metal-associated domain FK728_01318 PF00376 MerR family regulatory protein FK728_01318 PF09278 MerR, DNA binding FK728_01325 PF02601 Exonuclease VII, large subunit FK728_01325 PF13742 OB-fold nucleic acid binding domain FK728_01332 PF01810 LysE type translocator FK728_01333 PF00313 'Cold-shock' DNA-binding domain FK728_01335 PF14748 Pyrroline-5-carboxylate reductase dimerisation FK728_01335 PF03807 NADP oxidoreductase coenzyme F420-dependent FK728_01340 PF07690 Major Facilitator Superfamily FK728_01341 PF01638 HxlR-like helix-turn-helix FK728_01346 PF13091 PLD-like domain FK728_01349 PF01406 tRNA synthetases class I (C) catalytic domain FK728_01349 PF09190 DALR domain FK728_01350 PF01380 SIS domain FK728_01350 PF00571 CBS domain FK728_01353 PF03968 OstA-like protein FK728_01354 PF00005 ABC transporter FK728_01354 PF12399 Branched-chain amino acid ATP-binding cassette transporter FK728_01355 PF02321 Outer membrane efflux protein FK728_01356 PF00664 ABC transporter transmembrane region FK728_01356 PF03412 Peptidase C39 family FK728_01356 PF00005 ABC transporter FK728_01358 PF01205 Uncharacterized protein family UPF0029 FK728_01359 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_01361 PF01596 O-methyltransferase FK728_01363 PF00037 4Fe-4S binding domain FK728_01363 PF11953 Domain of unknown function (DUF3470) FK728_01365 PF01624 MutS domain I FK728_01365 PF00488 MutS domain V FK728_01365 PF05190 MutS family domain IV FK728_01365 PF05192 MutS domain III FK728_01365 PF05188 MutS domain II FK728_01366 PF01037 Lrp/AsnC ligand binding domain FK728_01367 PF00892 EamA-like transporter family FK728_01368 PF03707 Bacterial signalling protein N terminal repeat FK728_01368 PF00990 Diguanylate cyclase, GGDEF domain FK728_01368 PF00563 EAL domain FK728_01369 PF03279 Bacterial lipid A biosynthesis acyltransferase FK728_01371 PF07690 Major Facilitator Superfamily FK728_01375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FK728_01375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FK728_01379 PF13333 Integrase core domain FK728_01379 PF00665 Integrase core domain FK728_01379 PF13276 HTH-like domain FK728_01383 PF00199 Catalase FK728_01384 PF01292 Prokaryotic cytochrome b561 FK728_01388 PF12697 Alpha/beta hydrolase family FK728_01389 PF01613 Flavin reductase like domain FK728_01390 PF00296 Luciferase-like monooxygenase FK728_01391 PF00171 Aldehyde dehydrogenase family FK728_01392 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FK728_01394 PF00171 Aldehyde dehydrogenase family FK728_01395 PF02627 Carboxymuconolactone decarboxylase family FK728_01396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01396 PF03466 LysR substrate binding domain FK728_01397 PF02525 Flavodoxin-like fold FK728_01398 PF09339 IclR helix-turn-helix domain FK728_01398 PF01614 Bacterial transcriptional regulator FK728_01399 PF01494 FAD binding domain FK728_01400 PF07702 UTRA domain FK728_01400 PF00392 Bacterial regulatory proteins, gntR family FK728_01402 PF00005 ABC transporter FK728_01402 PF08402 TOBE domain FK728_01403 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01404 PF01266 FAD dependent oxidoreductase FK728_01405 PF00266 Aminotransferase class-V FK728_01406 PF13419 Haloacid dehalogenase-like hydrolase FK728_01407 PF07690 Major Facilitator Superfamily FK728_01408 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01408 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_01408 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01409 PF02515 CoA-transferase family III FK728_01410 PF09339 IclR helix-turn-helix domain FK728_01411 PF00378 Enoyl-CoA hydratase/isomerase FK728_01412 PF03060 Nitronate monooxygenase FK728_01413 PF07690 Major Facilitator Superfamily FK728_01414 PF09339 IclR helix-turn-helix domain FK728_01415 PF02803 Thiolase, C-terminal domain FK728_01415 PF00108 Thiolase, N-terminal domain FK728_01416 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FK728_01416 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FK728_01416 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FK728_01418 PF00378 Enoyl-CoA hydratase/isomerase FK728_01419 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01419 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01419 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_01420 PF07690 Major Facilitator Superfamily FK728_01421 PF01144 Coenzyme A transferase FK728_01422 PF01144 Coenzyme A transferase FK728_01424 PF07690 Major Facilitator Superfamily FK728_01426 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01426 PF12806 Acetyl-CoA dehydrogenase C-terminal like FK728_01426 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_01426 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01429 PF03466 LysR substrate binding domain FK728_01429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01430 PF00682 HMGL-like FK728_01431 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FK728_01431 PF00364 Biotin-requiring enzyme FK728_01431 PF00289 Biotin carboxylase, N-terminal domain FK728_01431 PF02785 Biotin carboxylase C-terminal domain FK728_01432 PF00378 Enoyl-CoA hydratase/isomerase FK728_01433 PF01039 Carboxyl transferase domain FK728_01434 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01434 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_01434 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01435 PF00440 Bacterial regulatory proteins, tetR family FK728_01436 PF00501 AMP-binding enzyme FK728_01436 PF13193 AMP-binding enzyme C-terminal domain FK728_01441 PF03466 LysR substrate binding domain FK728_01441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01449 PF00994 Probable molybdopterin binding domain FK728_01449 PF18146 Damage-inducible protein CinA KH domain FK728_01449 PF02464 Competence-damaged protein FK728_01451 PF00199 Catalase FK728_01451 PF18011 C-terminal domain found in long catalases FK728_01451 PF06628 Catalase-related immune-responsive FK728_01456 PF00717 Peptidase S24-like FK728_01458 PF01037 Lrp/AsnC ligand binding domain FK728_01460 PF09308 LuxQ, periplasmic FK728_01460 PF00072 Response regulator receiver domain FK728_01460 PF00512 His Kinase A (phospho-acceptor) domain FK728_01460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_01461 PF00072 Response regulator receiver domain FK728_01462 PF02129 X-Pro dipeptidyl-peptidase (S15 family) FK728_01464 PF03466 LysR substrate binding domain FK728_01464 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01467 PF01638 HxlR-like helix-turn-helix FK728_01468 PF07690 Major Facilitator Superfamily FK728_01470 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01471 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01472 PF00005 ABC transporter FK728_01473 PF00497 Bacterial extracellular solute-binding proteins, family 3 FK728_01474 PF00497 Bacterial extracellular solute-binding proteins, family 3 FK728_01475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01475 PF03466 LysR substrate binding domain FK728_01476 PF01810 LysE type translocator FK728_01477 PF00266 Aminotransferase class-V FK728_01479 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_01480 PF00581 Rhodanese-like domain FK728_01482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01482 PF03466 LysR substrate binding domain FK728_01483 PF02798 Glutathione S-transferase, N-terminal domain FK728_01484 PF14834 Glutathione S-transferase, C-terminal domain FK728_01484 PF02798 Glutathione S-transferase, N-terminal domain FK728_01485 PF03466 LysR substrate binding domain FK728_01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01486 PF03788 LrgA family FK728_01487 PF04172 LrgB-like family FK728_01488 PF00392 Bacterial regulatory proteins, gntR family FK728_01488 PF00155 Aminotransferase class I and II FK728_01491 PF07690 Major Facilitator Superfamily FK728_01493 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01493 PF03466 LysR substrate binding domain FK728_01494 PF16957 Malonate decarboxylase, alpha subunit, transporter FK728_01495 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FK728_01496 PF06857 Malonate decarboxylase delta subunit (MdcD) FK728_01497 PF01039 Carboxyl transferase domain FK728_01499 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FK728_01500 PF00698 Acyl transferase domain FK728_01503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01503 PF03466 LysR substrate binding domain FK728_01504 PF00392 Bacterial regulatory proteins, gntR family FK728_01504 PF00155 Aminotransferase class I and II FK728_01506 PF02322 Cytochrome bd terminal oxidase subunit II FK728_01507 PF01654 Cytochrome bd terminal oxidase subunit I FK728_01509 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01509 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FK728_01509 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01510 PF00296 Luciferase-like monooxygenase FK728_01511 PF00083 Sugar (and other) transporter FK728_01513 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FK728_01514 PF00005 ABC transporter FK728_01515 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01516 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FK728_01517 PF01177 Asp/Glu/Hydantoin racemase FK728_01518 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FK728_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01520 PF03466 LysR substrate binding domain FK728_01522 PF01979 Amidohydrolase family FK728_01522 PF13382 Adenine deaminase C-terminal domain FK728_01524 PF03960 ArsC family FK728_01525 PF01022 Bacterial regulatory protein, arsR family FK728_01526 PF01758 Sodium Bile acid symporter family FK728_01527 PF03466 LysR substrate binding domain FK728_01527 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01530 PF13192 Thioredoxin domain FK728_01530 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_01533 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_01534 PF00588 SpoU rRNA Methylase family FK728_01535 PF02811 PHP domain FK728_01535 PF07733 Bacterial DNA polymerase III alpha NTPase domain FK728_01535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FK728_01535 PF14579 Helix-hairpin-helix motif FK728_01535 PF01336 OB-fold nucleic acid binding domain FK728_01536 PF00710 Asparaginase, N-terminal FK728_01536 PF17763 Glutaminase/Asparaginase C-terminal domain FK728_01537 PF00375 Sodium:dicarboxylate symporter family FK728_01538 PF00155 Aminotransferase class I and II FK728_01539 PF01641 SelR domain FK728_01540 PF00255 Glutathione peroxidase FK728_01541 PF12833 Helix-turn-helix domain FK728_01541 PF12852 Cupin FK728_01543 PF00155 Aminotransferase class I and II FK728_01544 PF08335 GlnD PII-uridylyltransferase FK728_01544 PF01966 HD domain FK728_01544 PF01909 Nucleotidyltransferase domain FK728_01545 PF02222 ATP-grasp domain FK728_01547 PF05437 Branched-chain amino acid transport protein (AzlD) FK728_01548 PF03591 AzlC protein FK728_01553 PF06071 Protein of unknown function (DUF933) FK728_01553 PF01926 50S ribosome-binding GTPase FK728_01554 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01555 PF09383 NIL domain FK728_01555 PF00005 ABC transporter FK728_01556 PF03180 NLPA lipoprotein FK728_01557 PF03180 NLPA lipoprotein FK728_01558 PF00296 Luciferase-like monooxygenase FK728_01560 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FK728_01560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01563 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01564 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01565 PF00005 ABC transporter FK728_01567 PF01037 Lrp/AsnC ligand binding domain FK728_01568 PF01709 Transcriptional regulator FK728_01570 PF00440 Bacterial regulatory proteins, tetR family FK728_01575 PF03466 LysR substrate binding domain FK728_01575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01577 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FK728_01579 PF00892 EamA-like transporter family FK728_01583 PF00577 Outer membrane usher protein FK728_01583 PF13954 PapC N-terminal domain FK728_01583 PF13953 PapC C-terminal domain FK728_01584 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FK728_01584 PF02753 Pili assembly chaperone PapD, C-terminal domain FK728_01585 PF16970 Type-1 fimbrial protein, A FK728_01588 PF06968 Biotin and Thiamin Synthesis associated domain FK728_01588 PF04055 Radical SAM superfamily FK728_01589 PF08331 Domain of unknown function (DUF1730) FK728_01590 PF01256 Carbohydrate kinase FK728_01590 PF03853 YjeF-related protein N-terminus FK728_01591 PF02075 Crossover junction endodeoxyribonuclease RuvC FK728_01594 PF00905 Penicillin binding protein transpeptidase domain FK728_01598 PF00438 S-adenosylmethionine synthetase, N-terminal domain FK728_01598 PF02772 S-adenosylmethionine synthetase, central domain FK728_01598 PF02773 S-adenosylmethionine synthetase, C-terminal domain FK728_01599 PF02780 Transketolase, C-terminal domain FK728_01599 PF00456 Transketolase, thiamine diphosphate binding domain FK728_01599 PF02779 Transketolase, pyrimidine binding domain FK728_01601 PF04264 YceI-like domain FK728_01603 PF09992 Phosphodiester glycosidase FK728_01605 PF05958 tRNA (Uracil-5-)-methyltransferase FK728_01606 PF04229 GrpB protein FK728_01607 PF00171 Aldehyde dehydrogenase family FK728_01607 PF01619 Proline dehydrogenase FK728_01607 PF14850 DNA-binding domain of Proline dehydrogenase FK728_01607 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FK728_01608 PF01037 Lrp/AsnC ligand binding domain FK728_01609 PF00474 Sodium:solute symporter family FK728_01610 PF02146 Sir2 family FK728_01611 PF01597 Glycine cleavage H-protein FK728_01612 PF12833 Helix-turn-helix domain FK728_01612 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FK728_01614 PF00664 ABC transporter transmembrane region FK728_01614 PF00005 ABC transporter FK728_01615 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FK728_01616 PF06912 Protein of unknown function (DUF1275) FK728_01617 PF00375 Sodium:dicarboxylate symporter family FK728_01620 PF08007 Cupin superfamily protein FK728_01621 PF02545 Maf-like protein FK728_01623 PF00162 Phosphoglycerate kinase FK728_01625 PF01116 Fructose-bisphosphate aldolase class-II FK728_01626 PF09312 SurA N-terminal domain FK728_01626 PF00639 PPIC-type PPIASE domain FK728_01627 PF04453 LPS transport system D FK728_01627 PF03968 OstA-like protein FK728_01628 PF01636 Phosphotransferase enzyme family FK728_01629 PF00483 Nucleotidyl transferase FK728_01630 PF02527 rRNA small subunit methyltransferase G FK728_01631 PF13614 AAA domain FK728_01632 PF02195 ParB-like nuclease domain FK728_01632 PF17762 HTH domain found in ParB protein FK728_01633 PF01618 MotA/TolQ/ExbB proton channel family FK728_01635 PF00005 ABC transporter FK728_01635 PF00664 ABC transporter transmembrane region FK728_01636 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FK728_01637 PF02348 Cytidylyltransferase FK728_01638 PF09115 DNA polymerase III, delta subunit, C terminal FK728_01640 PF01026 TatD related DNase FK728_01643 PF02501 Type II secretion system (T2SS), protein I FK728_01643 PF07963 Prokaryotic N-terminal methylation motif FK728_01644 PF11612 Type II secretion system (T2SS), protein J FK728_01644 PF07963 Prokaryotic N-terminal methylation motif FK728_01645 PF03934 Type II secretion system (T2SS), protein K FK728_01647 PF03167 Uracil DNA glycosylase superfamily FK728_01649 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FK728_01651 PF02224 Cytidylate kinase FK728_01652 PF00575 S1 RNA binding domain FK728_01653 PF00216 Bacterial DNA-binding protein FK728_01655 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FK728_01657 PF00743 Flavin-binding monooxygenase-like FK728_01659 PF03969 AFG1-like ATPase FK728_01660 PF01274 Malate synthase FK728_01662 PF02472 Biopolymer transport protein ExbD/TolR FK728_01663 PF02472 Biopolymer transport protein ExbD/TolR FK728_01664 PF01618 MotA/TolQ/ExbB proton channel family FK728_01666 PF07715 TonB-dependent Receptor Plug Domain FK728_01666 PF00593 TonB dependent receptor FK728_01668 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FK728_01670 PF01432 Peptidase family M3 FK728_01671 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01672 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01673 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FK728_01673 PF00005 ABC transporter FK728_01676 PF00459 Inositol monophosphatase family FK728_01678 PF01649 Ribosomal protein S20 FK728_01679 PF13460 NAD(P)H-binding FK728_01680 PF03737 Aldolase/RraA FK728_01684 PF02559 CarD-like/TRCF domain FK728_01684 PF00270 DEAD/DEAH box helicase FK728_01684 PF00271 Helicase conserved C-terminal domain FK728_01684 PF03461 TRCF domain FK728_01684 PF17757 UvrB interaction domain FK728_01686 PF00211 Adenylate and Guanylate cyclase catalytic domain FK728_01687 PF00111 2Fe-2S iron-sulfur cluster binding domain FK728_01688 PF00012 Hsp70 protein FK728_01689 PF07743 HSCB C-terminal oligomerisation domain FK728_01689 PF00226 DnaJ domain FK728_01690 PF01521 Iron-sulphur cluster biosynthesis FK728_01691 PF01592 NifU-like N terminal domain FK728_01692 PF00266 Aminotransferase class-V FK728_01693 PF02082 Transcriptional regulator FK728_01696 PF00216 Bacterial DNA-binding protein FK728_01697 PF00639 PPIC-type PPIASE domain FK728_01697 PF09312 SurA N-terminal domain FK728_01698 PF12852 Cupin FK728_01698 PF12833 Helix-turn-helix domain FK728_01699 PF00487 Fatty acid desaturase FK728_01700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_01700 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01701 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01701 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01701 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_01702 PF03109 ABC1 family FK728_01704 PF04073 Aminoacyl-tRNA editing domain FK728_01705 PF06276 Ferric iron reductase FhuF-like transporter FK728_01705 PF04183 IucA / IucC family FK728_01706 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FK728_01707 PF07690 Major Facilitator Superfamily FK728_01708 PF04183 IucA / IucC family FK728_01708 PF06276 Ferric iron reductase FhuF-like transporter FK728_01709 PF04183 IucA / IucC family FK728_01709 PF06276 Ferric iron reductase FhuF-like transporter FK728_01711 PF03737 Aldolase/RraA FK728_01712 PF00593 TonB dependent receptor FK728_01712 PF07715 TonB-dependent Receptor Plug Domain FK728_01717 PF13419 Haloacid dehalogenase-like hydrolase FK728_01719 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FK728_01720 PF02277 Phosphoribosyltransferase FK728_01721 PF00300 Histidine phosphatase superfamily (branch 1) FK728_01723 PF02654 Cobalamin-5-phosphate synthase FK728_01724 PF00793 DAHP synthetase I family FK728_01725 PF01925 Sulfite exporter TauE/SafE FK728_01729 PF07715 TonB-dependent Receptor Plug Domain FK728_01729 PF00593 TonB dependent receptor FK728_01730 PF02684 Lipid-A-disaccharide synthetase FK728_01732 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_01733 PF00005 ABC transporter FK728_01740 PF01230 HIT domain FK728_01746 PF08241 Methyltransferase domain FK728_01747 PF00561 alpha/beta hydrolase fold FK728_01748 PF01053 Cys/Met metabolism PLP-dependent enzyme FK728_01750 PF02575 YbaB/EbfC DNA-binding family FK728_01751 PF13662 Toprim domain FK728_01751 PF02132 RecR protein FK728_01752 PF00570 HRDC domain FK728_01752 PF01612 3'-5' exonuclease FK728_01753 PF13333 Integrase core domain FK728_01753 PF13276 HTH-like domain FK728_01753 PF00665 Integrase core domain FK728_01759 PF05166 YcgL domain FK728_01761 PF17862 AAA+ lid domain FK728_01761 PF00004 ATPase family associated with various cellular activities (AAA) FK728_01761 PF01434 Peptidase family M41 FK728_01763 PF00291 Pyridoxal-phosphate dependent enzyme FK728_01764 PF05175 Methyltransferase small domain FK728_01765 PF01264 Chorismate synthase FK728_01766 PF00990 Diguanylate cyclase, GGDEF domain FK728_01766 PF08448 PAS fold FK728_01769 PF04055 Radical SAM superfamily FK728_01770 PF13737 Transposase DDE domain FK728_01771 PF00676 Dehydrogenase E1 component FK728_01772 PF02780 Transketolase, C-terminal domain FK728_01772 PF02779 Transketolase, pyrimidine binding domain FK728_01773 PF00364 Biotin-requiring enzyme FK728_01773 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FK728_01773 PF02817 e3 binding domain FK728_01774 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FK728_01774 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_01775 PF00106 short chain dehydrogenase FK728_01776 PF00107 Zinc-binding dehydrogenase FK728_01776 PF08240 Alcohol dehydrogenase GroES-like domain FK728_01777 PF01062 Bestrophin, RFP-TM, chloride channel FK728_01778 PF02954 Bacterial regulatory protein, Fis family FK728_01778 PF00072 Response regulator receiver domain FK728_01778 PF00158 Sigma-54 interaction domain FK728_01779 PF00753 Metallo-beta-lactamase superfamily FK728_01779 PF04273 Putative phosphatase (DUF442) FK728_01780 PF04273 Putative phosphatase (DUF442) FK728_01780 PF00753 Metallo-beta-lactamase superfamily FK728_01781 PF01925 Sulfite exporter TauE/SafE FK728_01784 PF06445 GyrI-like small molecule binding domain FK728_01784 PF12833 Helix-turn-helix domain FK728_01785 PF01638 HxlR-like helix-turn-helix FK728_01786 PF02525 Flavodoxin-like fold FK728_01791 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FK728_01792 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01793 PF00005 ABC transporter FK728_01796 PF00083 Sugar (and other) transporter FK728_01797 PF07715 TonB-dependent Receptor Plug Domain FK728_01797 PF00593 TonB dependent receptor FK728_01798 PF00206 Lyase FK728_01798 PF10415 Fumarase C C-terminus FK728_01801 PF03466 LysR substrate binding domain FK728_01801 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01802 PF03466 LysR substrate binding domain FK728_01802 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01803 PF00108 Thiolase, N-terminal domain FK728_01803 PF02803 Thiolase, C-terminal domain FK728_01804 PF02667 Short chain fatty acid transporter FK728_01805 PF01144 Coenzyme A transferase FK728_01806 PF01144 Coenzyme A transferase FK728_01807 PF03466 LysR substrate binding domain FK728_01807 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01811 PF00440 Bacterial regulatory proteins, tetR family FK728_01815 PF06719 AraC-type transcriptional regulator N-terminus FK728_01815 PF12833 Helix-turn-helix domain FK728_01816 PF07690 Major Facilitator Superfamily FK728_01817 PF01738 Dienelactone hydrolase family FK728_01820 PF01613 Flavin reductase like domain FK728_01822 PF12833 Helix-turn-helix domain FK728_01822 PF14525 AraC-binding-like domain FK728_01823 PF00111 2Fe-2S iron-sulfur cluster binding domain FK728_01823 PF00175 Oxidoreductase NAD-binding domain FK728_01823 PF00970 Oxidoreductase FAD-binding domain FK728_01824 PF00866 Ring hydroxylating beta subunit FK728_01825 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FK728_01825 PF00355 Rieske [2Fe-2S] domain FK728_01826 PF03459 TOBE domain FK728_01826 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01828 PF00528 Binding-protein-dependent transport system inner membrane component FK728_01829 PF03459 TOBE domain FK728_01829 PF00005 ABC transporter FK728_01830 PF00106 short chain dehydrogenase FK728_01831 PF00550 Phosphopantetheine attachment site FK728_01831 PF00857 Isochorismatase family FK728_01833 PF00149 Calcineurin-like phosphoesterase FK728_01834 PF13089 Polyphosphate kinase N-terminal domain FK728_01834 PF13090 Polyphosphate kinase C-terminal domain 2 FK728_01834 PF02503 Polyphosphate kinase middle domain FK728_01834 PF17941 Polyphosphate kinase C-terminal domain 1 FK728_01835 PF12706 Beta-lactamase superfamily domain FK728_01836 PF03070 TENA/THI-4/PQQC family FK728_01837 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FK728_01838 PF04055 Radical SAM superfamily FK728_01838 PF13186 Iron-sulfur cluster-binding domain FK728_01839 PF01244 Membrane dipeptidase (Peptidase family M19) FK728_01843 PF13091 PLD-like domain FK728_01846 PF00199 Catalase FK728_01848 PF00107 Zinc-binding dehydrogenase FK728_01848 PF08240 Alcohol dehydrogenase GroES-like domain FK728_01851 PF13953 PapC C-terminal domain FK728_01851 PF00577 Outer membrane usher protein FK728_01851 PF13954 PapC N-terminal domain FK728_01852 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FK728_01852 PF02753 Pili assembly chaperone PapD, C-terminal domain FK728_01853 PF16970 Type-1 fimbrial protein, A FK728_01857 PF00743 Flavin-binding monooxygenase-like FK728_01858 PF12146 Serine aminopeptidase, S33 FK728_01860 PF00672 HAMP domain FK728_01860 PF00512 His Kinase A (phospho-acceptor) domain FK728_01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_01861 PF00072 Response regulator receiver domain FK728_01861 PF00486 Transcriptional regulatory protein, C terminal FK728_01862 PF00529 HlyD membrane-fusion protein of T1SS FK728_01862 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_01863 PF00873 AcrB/AcrD/AcrF family FK728_01864 PF02321 Outer membrane efflux protein FK728_01869 PF01266 FAD dependent oxidoreductase FK728_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01870 PF03466 LysR substrate binding domain FK728_01871 PF12146 Serine aminopeptidase, S33 FK728_01881 PF04607 Region found in RelA / SpoT proteins FK728_01881 PF02824 TGS domain FK728_01881 PF13291 ACT domain FK728_01883 PF01975 Survival protein SurE FK728_01888 PF07690 Major Facilitator Superfamily FK728_01889 PF13533 Biotin-lipoyl like FK728_01900 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FK728_01901 PF14572 Phosphoribosyl synthetase-associated domain FK728_01901 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FK728_01905 PF00005 ABC transporter FK728_01908 PF08240 Alcohol dehydrogenase GroES-like domain FK728_01908 PF00107 Zinc-binding dehydrogenase FK728_01909 PF12833 Helix-turn-helix domain FK728_01909 PF06719 AraC-type transcriptional regulator N-terminus FK728_01910 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FK728_01910 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FK728_01911 PF07690 Major Facilitator Superfamily FK728_01912 PF01370 NAD dependent epimerase/dehydratase family FK728_01913 PF03466 LysR substrate binding domain FK728_01913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01915 PF00920 Dehydratase family FK728_01916 PF00171 Aldehyde dehydrogenase family FK728_01919 PF00529 HlyD membrane-fusion protein of T1SS FK728_01919 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_01921 PF03737 Aldolase/RraA FK728_01922 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FK728_01922 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FK728_01922 PF01842 ACT domain FK728_01923 PF07690 Major Facilitator Superfamily FK728_01927 PF03466 LysR substrate binding domain FK728_01927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01929 PF08450 SMP-30/Gluconolactonase/LRE-like region FK728_01932 PF04909 Amidohydrolase FK728_01933 PF07690 Major Facilitator Superfamily FK728_01940 PF16295 Tetracyclin repressor-like, C-terminal domain FK728_01940 PF00440 Bacterial regulatory proteins, tetR family FK728_01941 PF01546 Peptidase family M20/M25/M40 FK728_01941 PF07687 Peptidase dimerisation domain FK728_01942 PF01037 Lrp/AsnC ligand binding domain FK728_01944 PF01546 Peptidase family M20/M25/M40 FK728_01944 PF07687 Peptidase dimerisation domain FK728_01945 PF00291 Pyridoxal-phosphate dependent enzyme FK728_01946 PF01042 Endoribonuclease L-PSP FK728_01947 PF00440 Bacterial regulatory proteins, tetR family FK728_01947 PF08359 YsiA-like protein, C-terminal region FK728_01948 PF12706 Beta-lactamase superfamily domain FK728_01950 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_01952 PF13411 MerR HTH family regulatory protein FK728_01954 PF01872 RibD C-terminal domain FK728_01955 PF00106 short chain dehydrogenase FK728_01956 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_01956 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK728_01957 PF00561 alpha/beta hydrolase fold FK728_01959 PF00171 Aldehyde dehydrogenase family FK728_01961 PF07690 Major Facilitator Superfamily FK728_01962 PF00920 Dehydratase family FK728_01963 PF00392 Bacterial regulatory proteins, gntR family FK728_01963 PF07729 FCD domain FK728_01965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01965 PF03466 LysR substrate binding domain FK728_01966 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FK728_01966 PF13378 Enolase C-terminal domain-like FK728_01967 PF02426 Muconolactone delta-isomerase FK728_01968 PF04444 Catechol dioxygenase N terminus FK728_01968 PF00775 Dioxygenase FK728_01969 PF01144 Coenzyme A transferase FK728_01970 PF01144 Coenzyme A transferase FK728_01971 PF02803 Thiolase, C-terminal domain FK728_01971 PF00108 Thiolase, N-terminal domain FK728_01972 PF12146 Serine aminopeptidase, S33 FK728_01973 PF01804 Penicillin amidase FK728_01974 PF00171 Aldehyde dehydrogenase family FK728_01976 PF07833 Copper amine oxidase N-terminal domain FK728_01976 PF02728 Copper amine oxidase, N3 domain FK728_01976 PF02727 Copper amine oxidase, N2 domain FK728_01976 PF01179 Copper amine oxidase, enzyme domain FK728_01977 PF02311 AraC-like ligand binding domain FK728_01977 PF12833 Helix-turn-helix domain FK728_01978 PF01613 Flavin reductase like domain FK728_01979 PF00175 Oxidoreductase NAD-binding domain FK728_01979 PF00111 2Fe-2S iron-sulfur cluster binding domain FK728_01982 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FK728_01982 PF00355 Rieske [2Fe-2S] domain FK728_01985 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FK728_01986 PF01425 Amidase FK728_01988 PF07690 Major Facilitator Superfamily FK728_01990 PF00106 short chain dehydrogenase FK728_01993 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_01993 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_01993 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_01994 PF03466 LysR substrate binding domain FK728_01994 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_01995 PF09339 IclR helix-turn-helix domain FK728_01995 PF01614 Bacterial transcriptional regulator FK728_01996 PF00753 Metallo-beta-lactamase superfamily FK728_01998 PF04143 Sulphur transport FK728_02000 PF01011 PQQ enzyme repeat FK728_02000 PF13360 PQQ-like domain FK728_02001 PF00665 Integrase core domain FK728_02001 PF13333 Integrase core domain FK728_02001 PF13276 HTH-like domain FK728_02003 PF13360 PQQ-like domain FK728_02003 PF01011 PQQ enzyme repeat FK728_02004 PF04966 Carbohydrate-selective porin, OprB family FK728_02005 PF05048 Periplasmic copper-binding protein (NosD) FK728_02006 PF01487 Type I 3-dehydroquinase FK728_02007 PF00775 Dioxygenase FK728_02008 PF00775 Dioxygenase FK728_02008 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FK728_02009 PF02627 Carboxymuconolactone decarboxylase family FK728_02010 PF07690 Major Facilitator Superfamily FK728_02011 PF00561 alpha/beta hydrolase fold FK728_02012 PF10397 Adenylosuccinate lyase C-terminus FK728_02012 PF00206 Lyase FK728_02013 PF00108 Thiolase, N-terminal domain FK728_02013 PF02803 Thiolase, C-terminal domain FK728_02014 PF01144 Coenzyme A transferase FK728_02015 PF01144 Coenzyme A transferase FK728_02016 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FK728_02017 PF04977 Septum formation initiator FK728_02019 PF13276 HTH-like domain FK728_02019 PF00665 Integrase core domain FK728_02019 PF13333 Integrase core domain FK728_02020 PF04239 Protein of unknown function (DUF421) FK728_02021 PF03952 Enolase, N-terminal domain FK728_02021 PF00113 Enolase, C-terminal TIM barrel domain FK728_02022 PF00793 DAHP synthetase I family FK728_02023 PF06418 CTP synthase N-terminus FK728_02023 PF00117 Glutamine amidotransferase class-I FK728_02029 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK728_02029 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_02032 PF00793 DAHP synthetase I family FK728_02033 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FK728_02034 PF00004 ATPase family associated with various cellular activities (AAA) FK728_02034 PF07724 AAA domain (Cdc48 subfamily) FK728_02034 PF17871 AAA lid domain FK728_02034 PF02861 Clp amino terminal domain, pathogenicity island component FK728_02034 PF10431 C-terminal, D2-small domain, of ClpB protein FK728_02035 PF02617 ATP-dependent Clp protease adaptor protein ClpS FK728_02037 PF02774 Semialdehyde dehydrogenase, dimerisation domain FK728_02037 PF01118 Semialdehyde dehydrogenase, NAD binding domain FK728_02040 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FK728_02041 PF00291 Pyridoxal-phosphate dependent enzyme FK728_02041 PF00585 C-terminal regulatory domain of Threonine dehydratase FK728_02042 PF02080 TrkA-C domain FK728_02042 PF02254 TrkA-N domain FK728_02043 PF02386 Cation transport protein FK728_02044 PF02253 Phospholipase A1 FK728_02045 PF00675 Insulinase (Peptidase family M16) FK728_02045 PF08367 Peptidase M16C associated FK728_02045 PF05193 Peptidase M16 inactive domain FK728_02046 PF07715 TonB-dependent Receptor Plug Domain FK728_02046 PF00593 TonB dependent receptor FK728_02047 PF00294 pfkB family carbohydrate kinase FK728_02049 PF07290 Protein of unknown function (DUF1449) FK728_02051 PF01654 Cytochrome bd terminal oxidase subunit I FK728_02052 PF02322 Cytochrome bd terminal oxidase subunit II FK728_02053 PF08173 Membrane bound YbgT-like protein FK728_02056 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FK728_02058 PF00448 SRP54-type protein, GTPase domain FK728_02058 PF02881 SRP54-type protein, helical bundle domain FK728_02063 PF00478 IMP dehydrogenase / GMP reductase domain FK728_02063 PF00571 CBS domain FK728_02064 PF00202 Aminotransferase class-III FK728_02065 PF00462 Glutaredoxin FK728_02067 PF03466 LysR substrate binding domain FK728_02067 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02068 PF00557 Metallopeptidase family M24 FK728_02069 PF05525 Branched-chain amino acid transport protein FK728_02074 PF00391 PEP-utilising enzyme, mobile domain FK728_02074 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FK728_02074 PF05524 PEP-utilising enzyme, N-terminal FK728_02074 PF00381 PTS HPr component phosphorylation site FK728_02074 PF02896 PEP-utilising enzyme, TIM barrel domain FK728_02075 PF00294 pfkB family carbohydrate kinase FK728_02076 PF02378 Phosphotransferase system, EIIC FK728_02076 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FK728_02079 PF03707 Bacterial signalling protein N terminal repeat FK728_02079 PF00990 Diguanylate cyclase, GGDEF domain FK728_02079 PF00563 EAL domain FK728_02081 PF07995 Glucose / Sorbosone dehydrogenase FK728_02082 PF02586 SOS response associated peptidase (SRAP) FK728_02083 PF00916 Sulfate permease family FK728_02083 PF01740 STAS domain FK728_02084 PF05922 Peptidase inhibitor I9 FK728_02084 PF00082 Subtilase family FK728_02086 PF00324 Amino acid permease FK728_02087 PF00266 Aminotransferase class-V FK728_02088 PF01037 Lrp/AsnC ligand binding domain FK728_02095 PF13419 Haloacid dehalogenase-like hydrolase FK728_02096 PF01479 S4 domain FK728_02097 PF00154 recA bacterial DNA recombination protein FK728_02098 PF02631 RecX family FK728_02100 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_02100 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FK728_02101 PF07977 FabA-like domain FK728_02102 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_02102 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FK728_02104 PF01103 Surface antigen FK728_02104 PF07244 Surface antigen variable number repeat FK728_02105 PF13180 PDZ domain FK728_02105 PF17820 PDZ domain FK728_02105 PF02163 Peptidase family M50 FK728_02106 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FK728_02106 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FK728_02106 PF13288 DXP reductoisomerase C-terminal domain FK728_02108 PF01255 Putative undecaprenyl diphosphate synthase FK728_02109 PF01765 Ribosome recycling factor FK728_02110 PF00696 Amino acid kinase family FK728_02111 PF04055 Radical SAM superfamily FK728_02111 PF18693 TRAM domain FK728_02111 PF00919 Uncharacterized protein family UPF0004 FK728_02112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_02112 PF00512 His Kinase A (phospho-acceptor) domain FK728_02112 PF00989 PAS fold FK728_02113 PF02954 Bacterial regulatory protein, Fis family FK728_02113 PF00072 Response regulator receiver domain FK728_02113 PF00158 Sigma-54 interaction domain FK728_02114 PF16859 Tetracyclin repressor-like, C-terminal domain FK728_02114 PF00440 Bacterial regulatory proteins, tetR family FK728_02115 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FK728_02115 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FK728_02117 PF02542 YgbB family FK728_02119 PF01266 FAD dependent oxidoreductase FK728_02123 PF00206 Lyase FK728_02123 PF10415 Fumarase C C-terminus FK728_02124 PF16363 GDP-mannose 4,6 dehydratase FK728_02125 PF02635 DsrE/DsrF-like family FK728_02129 PF00892 EamA-like transporter family FK728_02130 PF00392 Bacterial regulatory proteins, gntR family FK728_02130 PF00155 Aminotransferase class I and II FK728_02131 PF01638 HxlR-like helix-turn-helix FK728_02132 PF03454 MoeA C-terminal region (domain IV) FK728_02132 PF00994 Probable molybdopterin binding domain FK728_02132 PF03453 MoeA N-terminal region (domain I and II) FK728_02133 PF00994 Probable molybdopterin binding domain FK728_02133 PF01967 MoaC family FK728_02134 PF02391 MoaE protein FK728_02136 PF04055 Radical SAM superfamily FK728_02136 PF06463 Molybdenum Cofactor Synthesis C FK728_02137 PF01568 Molydopterin dinucleotide binding domain FK728_02137 PF00384 Molybdopterin oxidoreductase FK728_02137 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FK728_02138 PF12804 MobA-like NTP transferase domain FK728_02139 PF00384 Molybdopterin oxidoreductase FK728_02139 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FK728_02139 PF04324 BFD-like [2Fe-2S] binding domain FK728_02139 PF01568 Molydopterin dinucleotide binding domain FK728_02140 PF18267 Rubredoxin NAD+ reductase C-terminal domain FK728_02140 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FK728_02140 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_02140 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FK728_02140 PF04324 BFD-like [2Fe-2S] binding domain FK728_02141 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_02141 PF13806 Rieske-like [2Fe-2S] domain FK728_02141 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FK728_02141 PF18267 Rubredoxin NAD+ reductase C-terminal domain FK728_02141 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FK728_02141 PF04324 BFD-like [2Fe-2S] binding domain FK728_02143 PF00486 Transcriptional regulatory protein, C terminal FK728_02143 PF00072 Response regulator receiver domain FK728_02144 PF00005 ABC transporter FK728_02145 PF11799 impB/mucB/samB family C-terminal domain FK728_02145 PF13438 Domain of unknown function (DUF4113) FK728_02145 PF00817 impB/mucB/samB family FK728_02146 PF01220 Dehydroquinase class II FK728_02147 PF00364 Biotin-requiring enzyme FK728_02148 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FK728_02148 PF00289 Biotin carboxylase, N-terminal domain FK728_02148 PF02785 Biotin carboxylase C-terminal domain FK728_02150 PF12832 MFS_1 like family FK728_02154 PF01645 Conserved region in glutamate synthase FK728_02157 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FK728_02157 PF01565 FAD binding domain FK728_02158 PF01451 Low molecular weight phosphotyrosine protein phosphatase FK728_02160 PF00465 Iron-containing alcohol dehydrogenase FK728_02161 PF03061 Thioesterase superfamily FK728_02162 PF05506 Domain of unknown function (DUF756) FK728_02162 PF04185 Phosphoesterase family FK728_02164 PF12170 DNA polymerase III tau subunit V interacting with alpha FK728_02164 PF12169 DNA polymerase III subunits gamma and tau domain III FK728_02164 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FK728_02167 PF07690 Major Facilitator Superfamily FK728_02169 PF00144 Beta-lactamase FK728_02172 PF00108 Thiolase, N-terminal domain FK728_02172 PF02803 Thiolase, C-terminal domain FK728_02174 PF03466 LysR substrate binding domain FK728_02174 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02176 PF01810 LysE type translocator FK728_02177 PF01037 Lrp/AsnC ligand binding domain FK728_02178 PF03594 Benzoate membrane transport protein FK728_02179 PF02308 MgtC family FK728_02180 PF00690 Cation transporter/ATPase, N-terminus FK728_02180 PF00689 Cation transporting ATPase, C-terminus FK728_02185 PF00582 Universal stress protein family FK728_02186 PF12848 ABC transporter FK728_02186 PF00005 ABC transporter FK728_02190 PF07715 TonB-dependent Receptor Plug Domain FK728_02190 PF00593 TonB dependent receptor FK728_02196 PF00924 Mechanosensitive ion channel FK728_02197 PF07715 TonB-dependent Receptor Plug Domain FK728_02197 PF00593 TonB dependent receptor FK728_02198 PF00440 Bacterial regulatory proteins, tetR family FK728_02200 PF00665 Integrase core domain FK728_02200 PF13333 Integrase core domain FK728_02200 PF13276 HTH-like domain FK728_02202 PF01037 Lrp/AsnC ligand binding domain FK728_02203 PF01817 Chorismate mutase type II FK728_02208 PF13954 PapC N-terminal domain FK728_02208 PF00577 Outer membrane usher protein FK728_02208 PF13953 PapC C-terminal domain FK728_02211 PF11940 Domain of unknown function (DUF3458) Ig-like fold FK728_02211 PF01433 Peptidase family M1 domain FK728_02211 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FK728_02214 PF02110 Hydroxyethylthiazole kinase family FK728_02216 PF14493 Helix-turn-helix domain FK728_02216 PF05970 PIF1-like helicase FK728_02217 PF00465 Iron-containing alcohol dehydrogenase FK728_02220 PF00171 Aldehyde dehydrogenase family FK728_02221 PF13520 Amino acid permease FK728_02222 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FK728_02223 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FK728_02224 PF00117 Glutamine amidotransferase class-I FK728_02224 PF00958 GMP synthase C terminal domain FK728_02224 PF02540 NAD synthase FK728_02225 PF00749 tRNA synthetases class I (E and Q), catalytic domain FK728_02225 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FK728_02226 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FK728_02227 PF00149 Calcineurin-like phosphoesterase FK728_02229 PF00881 Nitroreductase family FK728_02231 PF17209 Hfq protein FK728_02233 PF08676 MutL C terminal dimerisation domain FK728_02233 PF01119 DNA mismatch repair protein, C-terminal domain FK728_02234 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FK728_02235 PF00849 RNA pseudouridylate synthase FK728_02235 PF01479 S4 domain FK728_02238 PF00849 RNA pseudouridylate synthase FK728_02238 PF01479 S4 domain FK728_02240 PF04284 Protein of unknown function (DUF441) FK728_02241 PF03466 LysR substrate binding domain FK728_02241 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02244 PF07690 Major Facilitator Superfamily FK728_02245 PF00520 Ion transport protein FK728_02245 PF00027 Cyclic nucleotide-binding domain FK728_02247 PF00939 Sodium:sulfate symporter transmembrane region FK728_02251 PF11791 Aconitate B N-terminal domain FK728_02251 PF06434 Aconitate hydratase 2 N-terminus FK728_02251 PF00330 Aconitase family (aconitate hydratase) FK728_02254 PF01103 Surface antigen FK728_02254 PF17243 POTRA domain TamA domain 1 FK728_02254 PF07244 Surface antigen variable number repeat FK728_02255 PF07690 Major Facilitator Superfamily FK728_02256 PF03232 Ubiquinone biosynthesis protein COQ7 FK728_02258 PF00120 Glutamine synthetase, catalytic domain FK728_02259 PF00486 Transcriptional regulatory protein, C terminal FK728_02259 PF00072 Response regulator receiver domain FK728_02260 PF00512 His Kinase A (phospho-acceptor) domain FK728_02260 PF02702 Osmosensitive K+ channel His kinase sensor domain FK728_02260 PF13493 Domain of unknown function (DUF4118) FK728_02260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_02261 PF02669 K+-transporting ATPase, c chain FK728_02263 PF03814 Potassium-transporting ATPase A subunit FK728_02267 PF03109 ABC1 family FK728_02268 PF00899 ThiF family FK728_02269 PF01613 Flavin reductase like domain FK728_02270 PF00501 AMP-binding enzyme FK728_02270 PF13193 AMP-binding enzyme C-terminal domain FK728_02271 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_02271 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_02271 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_02272 PF00106 short chain dehydrogenase FK728_02273 PF12833 Helix-turn-helix domain FK728_02274 PF13847 Methyltransferase domain FK728_02274 PF17827 PrmC N-terminal domain FK728_02275 PF03462 PCRF domain FK728_02275 PF00472 RF-1 domain FK728_02277 PF03466 LysR substrate binding domain FK728_02277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02280 PF00296 Luciferase-like monooxygenase FK728_02282 PF13994 PgaD-like protein FK728_02283 PF00535 Glycosyl transferase family 2 FK728_02284 PF14883 Hypothetical glycosyl hydrolase family 13 FK728_02284 PF01522 Polysaccharide deacetylase FK728_02286 PF13737 Transposase DDE domain FK728_02288 PF03618 Kinase/pyrophosphorylase FK728_02289 PF00391 PEP-utilising enzyme, mobile domain FK728_02289 PF02896 PEP-utilising enzyme, TIM barrel domain FK728_02289 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FK728_02291 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FK728_02291 PF06481 COX Aromatic Rich Motif FK728_02292 PF00115 Cytochrome C and Quinol oxidase polypeptide I FK728_02293 PF00510 Cytochrome c oxidase subunit III FK728_02294 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FK728_02295 PF01040 UbiA prenyltransferase family FK728_02296 PF01250 Ribosomal protein S6 FK728_02297 PF01084 Ribosomal protein S18 FK728_02298 PF03948 Ribosomal protein L9, C-terminal domain FK728_02298 PF01281 Ribosomal protein L9, N-terminal domain FK728_02299 PF03796 DnaB-like helicase C terminal domain FK728_02299 PF00772 DnaB-like helicase N terminal domain FK728_02300 PF01168 Alanine racemase, N-terminal domain FK728_02300 PF00842 Alanine racemase, C-terminal domain FK728_02302 PF01841 Transglutaminase-like superfamily FK728_02302 PF08379 Bacterial transglutaminase-like N-terminal region FK728_02304 PF14403 Circularly permuted ATP-grasp type 2 FK728_02306 PF13932 GidA associated domain FK728_02306 PF01134 Glucose inhibited division protein A FK728_02310 PF02954 Bacterial regulatory protein, Fis family FK728_02311 PF02142 MGS-like domain FK728_02311 PF01808 AICARFT/IMPCHase bienzyme FK728_02312 PF02843 Phosphoribosylglycinamide synthetase, C domain FK728_02312 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FK728_02312 PF02844 Phosphoribosylglycinamide synthetase, N domain FK728_02313 PF03180 NLPA lipoprotein FK728_02314 PF00005 ABC transporter FK728_02314 PF09383 NIL domain FK728_02315 PF00528 Binding-protein-dependent transport system inner membrane component FK728_02316 PF16123 Hydroxyacylglutathione hydrolase C-terminus FK728_02316 PF00753 Metallo-beta-lactamase superfamily FK728_02318 PF00375 Sodium:dicarboxylate symporter family FK728_02322 PF07995 Glucose / Sorbosone dehydrogenase FK728_02323 PF00892 EamA-like transporter family FK728_02324 PF01177 Asp/Glu/Hydantoin racemase FK728_02328 PF00486 Transcriptional regulatory protein, C terminal FK728_02328 PF00072 Response regulator receiver domain FK728_02329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_02329 PF00512 His Kinase A (phospho-acceptor) domain FK728_02329 PF08521 Two-component sensor kinase N-terminal FK728_02337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_02337 PF00672 HAMP domain FK728_02337 PF00512 His Kinase A (phospho-acceptor) domain FK728_02338 PF00072 Response regulator receiver domain FK728_02338 PF00486 Transcriptional regulatory protein, C terminal FK728_02340 PF00576 HIUase/Transthyretin family FK728_02342 PF02470 MlaD protein FK728_02343 PF04403 Paraquat-inducible protein A FK728_02345 PF06826 Predicted Permease Membrane Region FK728_02345 PF02080 TrkA-C domain FK728_02346 PF00155 Aminotransferase class I and II FK728_02351 PF00293 NUDIX domain FK728_02352 PF00083 Sugar (and other) transporter FK728_02352 PF08946 Osmosensory transporter coiled coil FK728_02362 PF07729 FCD domain FK728_02362 PF00392 Bacterial regulatory proteins, gntR family FK728_02364 PF03616 Sodium/glutamate symporter FK728_02365 PF00561 alpha/beta hydrolase fold FK728_02370 PF04076 Bacterial OB fold (BOF) protein FK728_02376 PF00324 Amino acid permease FK728_02377 PF00171 Aldehyde dehydrogenase family FK728_02378 PF00202 Aminotransferase class-III FK728_02379 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02379 PF03466 LysR substrate binding domain FK728_02383 PF13332 Hemagglutinin repeat FK728_02383 PF04829 Pre-toxin domain with VENN motif FK728_02383 PF05594 Haemagluttinin repeat FK728_02385 PF13737 Transposase DDE domain FK728_02386 PF04829 Pre-toxin domain with VENN motif FK728_02386 PF13332 Hemagglutinin repeat FK728_02386 PF13332 Hemagglutinin repeat FK728_02386 PF05860 haemagglutination activity domain FK728_02386 PF13332 Hemagglutinin repeat FK728_02386 PF04829 Pre-toxin domain with VENN motif FK728_02386 PF13018 Extended Signal Peptide of Type V secretion system FK728_02386 PF04829 Pre-toxin domain with VENN motif FK728_02386 PF13018 Extended Signal Peptide of Type V secretion system FK728_02386 PF05860 haemagglutination activity domain FK728_02386 PF13018 Extended Signal Peptide of Type V secretion system FK728_02386 PF05860 haemagglutination activity domain FK728_02387 PF08479 POTRA domain, ShlB-type FK728_02387 PF17287 POTRA domain FK728_02387 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FK728_02392 PF03793 PASTA domain FK728_02392 PF00069 Protein kinase domain FK728_02396 PF00814 Glycoprotease family FK728_02397 PF01165 Ribosomal protein S21 FK728_02398 PF09424 Yqey-like protein FK728_02399 PF01435 Peptidase family M48 FK728_02400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FK728_02400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FK728_02403 PF00156 Phosphoribosyl transferase domain FK728_02404 PF02674 Colicin V production protein FK728_02405 PF01180 Dihydroorotate dehydrogenase FK728_02409 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FK728_02409 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FK728_02410 PF00881 Nitroreductase family FK728_02412 PF00271 Helicase conserved C-terminal domain FK728_02412 PF00270 DEAD/DEAH box helicase FK728_02413 PF00313 'Cold-shock' DNA-binding domain FK728_02415 PF00140 Sigma-70 factor, region 1.2 FK728_02415 PF04545 Sigma-70, region 4 FK728_02415 PF04542 Sigma-70 region 2 FK728_02416 PF04241 Protein of unknown function (DUF423) FK728_02418 PF05690 Thiazole biosynthesis protein ThiG FK728_02420 PF03883 Peroxide stress protein YaaA FK728_02422 PF00753 Metallo-beta-lactamase superfamily FK728_02423 PF07687 Peptidase dimerisation domain FK728_02423 PF01546 Peptidase family M20/M25/M40 FK728_02425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FK728_02426 PF00800 Prephenate dehydratase FK728_02426 PF01817 Chorismate mutase type II FK728_02426 PF01842 ACT domain FK728_02427 PF00756 Putative esterase FK728_02428 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_02428 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_02428 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_02429 PF00375 Sodium:dicarboxylate symporter family FK728_02430 PF02885 Glycosyl transferase family, helical bundle domain FK728_02430 PF00591 Glycosyl transferase family, a/b domain FK728_02431 PF07023 Protein of unknown function (DUF1315) FK728_02432 PF01513 ATP-NAD kinase FK728_02433 PF00905 Penicillin binding protein transpeptidase domain FK728_02433 PF14814 Bifunctional transglycosylase second domain FK728_02433 PF00912 Transglycosylase FK728_02435 PF00293 NUDIX domain FK728_02437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_02437 PF00512 His Kinase A (phospho-acceptor) domain FK728_02437 PF08521 Two-component sensor kinase N-terminal FK728_02438 PF00072 Response regulator receiver domain FK728_02438 PF00486 Transcriptional regulatory protein, C terminal FK728_02440 PF00437 Type II/IV secretion system protein FK728_02442 PF01980 tRNA-methyltransferase O FK728_02442 PF18389 TrmO C-terminal domain FK728_02443 PF00175 Oxidoreductase NAD-binding domain FK728_02443 PF00970 Oxidoreductase FAD-binding domain FK728_02444 PF02567 Phenazine biosynthesis-like protein FK728_02445 PF00155 Aminotransferase class I and II FK728_02445 PF00392 Bacterial regulatory proteins, gntR family FK728_02447 PF00037 4Fe-4S binding domain FK728_02448 PF00893 Small Multidrug Resistance protein FK728_02449 PF00005 ABC transporter FK728_02450 PF00528 Binding-protein-dependent transport system inner membrane component FK728_02451 PF00528 Binding-protein-dependent transport system inner membrane component FK728_02452 PF00497 Bacterial extracellular solute-binding proteins, family 3 FK728_02453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02453 PF03466 LysR substrate binding domain FK728_02454 PF13533 Biotin-lipoyl like FK728_02455 PF00873 AcrB/AcrD/AcrF family FK728_02456 PF02321 Outer membrane efflux protein FK728_02457 PF00464 Serine hydroxymethyltransferase FK728_02462 PF00005 ABC transporter FK728_02463 PF01061 ABC-2 type transporter FK728_02464 PF14489 QueF-like protein FK728_02464 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FK728_02466 PF01098 Cell cycle protein FK728_02467 PF13406 Transglycosylase SLT domain FK728_02468 PF05036 Sporulation related domain FK728_02468 PF03330 Lytic transglycolase FK728_02472 PF12833 Helix-turn-helix domain FK728_02475 PF00889 Elongation factor TS FK728_02476 PF00318 Ribosomal protein S2 FK728_02477 PF00557 Metallopeptidase family M24 FK728_02479 PF07690 Major Facilitator Superfamily FK728_02482 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_02482 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FK728_02483 PF04055 Radical SAM superfamily FK728_02484 PF09317 Domain of unknown function (DUF1974) FK728_02484 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_02484 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_02487 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FK728_02487 PF05221 S-adenosyl-L-homocysteine hydrolase FK728_02488 PF02219 Methylenetetrahydrofolate reductase FK728_02489 PF04452 RNA methyltransferase FK728_02490 PF00990 Diguanylate cyclase, GGDEF domain FK728_02490 PF03707 Bacterial signalling protein N terminal repeat FK728_02490 PF00563 EAL domain FK728_02491 PF01515 Phosphate acetyl/butaryl transferase FK728_02491 PF03949 Malic enzyme, NAD binding domain FK728_02491 PF00390 Malic enzyme, N-terminal domain FK728_02492 PF01743 Poly A polymerase head domain FK728_02492 PF12627 Probable RNA and SrmB- binding site of polymerase A FK728_02493 PF13180 PDZ domain FK728_02494 PF01784 NIF3 (NGG1p interacting factor 3) FK728_02495 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FK728_02495 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FK728_02502 PF01040 UbiA prenyltransferase family FK728_02503 PF04345 Chorismate lyase FK728_02505 PF00854 POT family FK728_02507 PF00117 Glutamine amidotransferase class-I FK728_02508 PF01433 Peptidase family M1 domain FK728_02508 PF11838 ERAP1-like C-terminal domain FK728_02509 PF00593 TonB dependent receptor FK728_02509 PF07715 TonB-dependent Receptor Plug Domain FK728_02510 PF02885 Glycosyl transferase family, helical bundle domain FK728_02510 PF00591 Glycosyl transferase family, a/b domain FK728_02511 PF00218 Indole-3-glycerol phosphate synthase FK728_02514 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FK728_02514 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FK728_02515 PF00111 2Fe-2S iron-sulfur cluster binding domain FK728_02515 PF01799 [2Fe-2S] binding domain FK728_02517 PF00144 Beta-lactamase FK728_02520 PF05675 Protein of unknown function (DUF817) FK728_02521 PF01208 Uroporphyrinogen decarboxylase (URO-D) FK728_02523 PF00425 chorismate binding enzyme FK728_02525 PF00975 Thioesterase domain FK728_02526 PF00664 ABC transporter transmembrane region FK728_02526 PF00005 ABC transporter FK728_02527 PF00005 ABC transporter FK728_02527 PF00664 ABC transporter transmembrane region FK728_02529 PF00282 Pyridoxal-dependent decarboxylase conserved domain FK728_02530 PF00550 Phosphopantetheine attachment site FK728_02530 PF00857 Isochorismatase family FK728_02531 PF13193 AMP-binding enzyme C-terminal domain FK728_02531 PF00501 AMP-binding enzyme FK728_02532 PF00668 Condensation domain FK728_02532 PF00501 AMP-binding enzyme FK728_02532 PF00550 Phosphopantetheine attachment site FK728_02533 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FK728_02534 PF07715 TonB-dependent Receptor Plug Domain FK728_02534 PF00593 TonB dependent receptor FK728_02535 PF01497 Periplasmic binding protein FK728_02536 PF00005 ABC transporter FK728_02537 PF01032 FecCD transport family FK728_02538 PF01032 FecCD transport family FK728_02541 PF00975 Thioesterase domain FK728_02541 PF13193 AMP-binding enzyme C-terminal domain FK728_02541 PF00501 AMP-binding enzyme FK728_02541 PF00550 Phosphopantetheine attachment site FK728_02541 PF00668 Condensation domain FK728_02542 PF00501 AMP-binding enzyme FK728_02542 PF00668 Condensation domain FK728_02542 PF13193 AMP-binding enzyme C-terminal domain FK728_02542 PF00550 Phosphopantetheine attachment site FK728_02544 PF13309 HTH domain FK728_02544 PF08348 YheO-like PAS domain FK728_02545 PF00291 Pyridoxal-phosphate dependent enzyme FK728_02546 PF02678 Pirin FK728_02546 PF17954 Quercetinase C-terminal cupin domain FK728_02551 PF04328 Selenoprotein, putative FK728_02552 PF13722 5TM C-terminal transporter carbon starvation CstA FK728_02552 PF02554 Carbon starvation protein CstA FK728_02553 PF08207 Elongation factor P (EF-P) KOW-like domain FK728_02553 PF01132 Elongation factor P (EF-P) OB domain FK728_02553 PF09285 Elongation factor P, C-terminal FK728_02554 PF04055 Radical SAM superfamily FK728_02556 PF00563 EAL domain FK728_02556 PF12792 CSS motif domain associated with EAL FK728_02557 PF01197 Ribosomal protein L31 FK728_02558 PF13593 SBF-like CPA transporter family (DUF4137) FK728_02559 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FK728_02560 PF07690 Major Facilitator Superfamily FK728_02561 PF05362 Lon protease (S16) C-terminal proteolytic domain FK728_02561 PF13654 AAA domain FK728_02562 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02562 PF03466 LysR substrate binding domain FK728_02563 PF01551 Peptidase family M23 FK728_02563 PF01476 LysM domain FK728_02564 PF01975 Survival protein SurE FK728_02567 PF07943 Penicillin-binding protein 5, C-terminal domain FK728_02567 PF00768 D-alanyl-D-alanine carboxypeptidase FK728_02568 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_02569 PF13344 Haloacid dehalogenase-like hydrolase FK728_02569 PF00293 NUDIX domain FK728_02571 PF04356 Protein of unknown function (DUF489) FK728_02572 PF08328 Adenylosuccinate lyase C-terminal FK728_02572 PF00206 Lyase FK728_02575 PF08496 Peptidase family S49 N-terminal FK728_02575 PF01343 Peptidase family S49 FK728_02576 PF00005 ABC transporter FK728_02577 PF00528 Binding-protein-dependent transport system inner membrane component FK728_02578 PF00528 Binding-protein-dependent transport system inner membrane component FK728_02579 PF12849 PBP superfamily domain FK728_02580 PF00324 Amino acid permease FK728_02581 PF00205 Thiamine pyrophosphate enzyme, central domain FK728_02581 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FK728_02581 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FK728_02582 PF01037 Lrp/AsnC ligand binding domain FK728_02583 PF00171 Aldehyde dehydrogenase family FK728_02584 PF00282 Pyridoxal-dependent decarboxylase conserved domain FK728_02585 PF00202 Aminotransferase class-III FK728_02588 PF02525 Flavodoxin-like fold FK728_02589 PF00487 Fatty acid desaturase FK728_02590 PF00175 Oxidoreductase NAD-binding domain FK728_02590 PF00111 2Fe-2S iron-sulfur cluster binding domain FK728_02590 PF00970 Oxidoreductase FAD-binding domain FK728_02591 PF00440 Bacterial regulatory proteins, tetR family FK728_02593 PF18337 RapA N-terminal Tudor like domain FK728_02593 PF18339 RapA N-terminal Tudor like domain 1 FK728_02593 PF12137 RNA polymerase recycling family C-terminal FK728_02593 PF00176 SNF2 family N-terminal domain FK728_02593 PF00271 Helicase conserved C-terminal domain FK728_02594 PF00849 RNA pseudouridylate synthase FK728_02596 PF00202 Aminotransferase class-III FK728_02597 PF02581 Thiamine monophosphate synthase FK728_02602 PF05193 Peptidase M16 inactive domain FK728_02602 PF00675 Insulinase (Peptidase family M16) FK728_02603 PF02567 Phenazine biosynthesis-like protein FK728_02605 PF03466 LysR substrate binding domain FK728_02605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02606 PF06779 Uncharacterised MFS-type transporter YbfB FK728_02609 PF00180 Isocitrate/isopropylmalate dehydrogenase FK728_02610 PF00849 RNA pseudouridylate synthase FK728_02611 PF03971 Monomeric isocitrate dehydrogenase FK728_02613 PF07943 Penicillin-binding protein 5, C-terminal domain FK728_02613 PF00768 D-alanyl-D-alanine carboxypeptidase FK728_02614 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_02615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK728_02616 PF00875 DNA photolyase FK728_02616 PF03441 FAD binding domain of DNA photolyase FK728_02622 PF02350 UDP-N-acetylglucosamine 2-epimerase FK728_02625 PF03060 Nitronate monooxygenase FK728_02626 PF01207 Dihydrouridine synthase (Dus) FK728_02627 PF07759 Protein of unknown function (DUF1615) FK728_02629 PF01472 PUA domain FK728_02629 PF00696 Amino acid kinase family FK728_02630 PF01926 50S ribosome-binding GTPase FK728_02630 PF01018 GTP1/OBG FK728_02633 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FK728_02633 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FK728_02634 PF00892 EamA-like transporter family FK728_02636 PF04851 Type III restriction enzyme, res subunit FK728_02636 PF17757 UvrB interaction domain FK728_02636 PF00271 Helicase conserved C-terminal domain FK728_02636 PF12344 Ultra-violet resistance protein B FK728_02636 PF02151 UvrB/uvrC motif FK728_02638 PF00990 Diguanylate cyclase, GGDEF domain FK728_02638 PF17151 Periplasmic sensor domain FK728_02645 PF00106 short chain dehydrogenase FK728_02646 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FK728_02647 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FK728_02648 PF11967 Recombination protein O N terminal FK728_02648 PF02565 Recombination protein O C terminal FK728_02650 PF01926 50S ribosome-binding GTPase FK728_02650 PF07650 KH domain FK728_02651 PF14622 Ribonuclease-III-like FK728_02651 PF00035 Double-stranded RNA binding motif FK728_02653 PF10502 Signal peptidase, peptidase S26 FK728_02654 PF00679 Elongation factor G C-terminus FK728_02654 PF00009 Elongation factor Tu GTP binding domain FK728_02654 PF03144 Elongation factor Tu domain 2 FK728_02654 PF06421 GTP-binding protein LepA C-terminus FK728_02656 PF13180 PDZ domain FK728_02657 PF00890 FAD binding domain FK728_02657 PF02910 Fumarate reductase flavoprotein C-term FK728_02660 PF02223 Thymidylate kinase FK728_02661 PF02618 YceG-like family FK728_02662 PF01063 Amino-transferase class IV FK728_02665 PF00528 Binding-protein-dependent transport system inner membrane component FK728_02666 PF00528 Binding-protein-dependent transport system inner membrane component FK728_02667 PF12857 TOBE-like domain FK728_02667 PF00005 ABC transporter FK728_02668 PF03466 LysR substrate binding domain FK728_02668 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02670 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FK728_02670 PF14602 Hexapeptide repeat of succinyl-transferase FK728_02670 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_02672 PF06508 Queuosine biosynthesis protein QueC FK728_02675 PF00578 AhpC/TSA family FK728_02677 PF01467 Cytidylyltransferase-like FK728_02677 PF00293 NUDIX domain FK728_02678 PF00378 Enoyl-CoA hydratase/isomerase FK728_02679 PF01784 NIF3 (NGG1p interacting factor 3) FK728_02680 PF07690 Major Facilitator Superfamily FK728_02681 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FK728_02681 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FK728_02681 PF02769 AIR synthase related protein, C-terminal domain FK728_02683 PF01966 HD domain FK728_02684 PF01330 RuvA N terminal domain FK728_02684 PF07499 RuvA, C-terminal domain FK728_02685 PF05496 Holliday junction DNA helicase RuvB P-loop domain FK728_02685 PF17864 RuvB AAA lid domain FK728_02685 PF05491 RuvB C-terminal winged helix domain FK728_02686 PF01546 Peptidase family M20/M25/M40 FK728_02686 PF07687 Peptidase dimerisation domain FK728_02687 PF03061 Thioesterase superfamily FK728_02688 PF01618 MotA/TolQ/ExbB proton channel family FK728_02689 PF02472 Biopolymer transport protein ExbD/TolR FK728_02691 PF07676 WD40-like Beta Propeller Repeat FK728_02691 PF04052 TolB amino-terminal domain FK728_02692 PF00691 OmpA family FK728_02694 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FK728_02695 PF00588 SpoU rRNA Methylase family FK728_02695 PF08032 RNA 2'-O ribose methyltransferase substrate binding FK728_02701 PF11638 DnaA N-terminal domain FK728_02701 PF08299 Bacterial dnaA protein helix-turn-helix FK728_02701 PF00308 Bacterial dnaA protein FK728_02702 PF01594 AI-2E family transporter FK728_02703 PF02769 AIR synthase related protein, C-terminal domain FK728_02703 PF00586 AIR synthase related protein, N-terminal domain FK728_02704 PF00551 Formyl transferase FK728_02705 PF12697 Alpha/beta hydrolase family FK728_02706 PF06965 Na+/H+ antiporter 1 FK728_02706 PF01343 Peptidase family S49 FK728_02708 PF13567 Domain of unknown function (DUF4131) FK728_02708 PF03772 Competence protein FK728_02708 PF00753 Metallo-beta-lactamase superfamily FK728_02709 PF00005 ABC transporter FK728_02710 PF12704 MacB-like periplasmic core domain FK728_02710 PF02687 FtsX-like permease family FK728_02712 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FK728_02715 PF00266 Aminotransferase class-V FK728_02717 PF13533 Biotin-lipoyl like FK728_02721 PF00535 Glycosyl transferase family 2 FK728_02724 PF03989 DNA gyrase C-terminal domain, beta-propeller FK728_02724 PF00521 DNA gyrase/topoisomerase IV, subunit A FK728_02725 PF01012 Electron transfer flavoprotein domain FK728_02725 PF00766 Electron transfer flavoprotein FAD-binding domain FK728_02726 PF01012 Electron transfer flavoprotein domain FK728_02727 PF00589 Phage integrase family FK728_02727 PF02899 Phage integrase, N-terminal SAM-like domain FK728_02728 PF01810 LysE type translocator FK728_02729 PF01678 Diaminopimelate epimerase FK728_02730 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FK728_02730 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FK728_02732 PF00324 Amino acid permease FK728_02733 PF18073 Rubredoxin metal binding domain FK728_02735 PF00152 tRNA synthetases class II (D, K and N) FK728_02736 PF11890 Domain of unknown function (DUF3410) FK728_02736 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FK728_02736 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FK728_02737 PF06803 Protein of unknown function (DUF1232) FK728_02738 PF02634 FdhD/NarQ family FK728_02739 PF00384 Molybdopterin oxidoreductase FK728_02740 PF02595 Glycerate kinase family FK728_02743 PF00881 Nitroreductase family FK728_02748 PF13276 HTH-like domain FK728_02748 PF00665 Integrase core domain FK728_02748 PF13333 Integrase core domain FK728_02752 PF09857 Putative toxin of bacterial toxin-antitoxin pair FK728_02759 PF00501 AMP-binding enzyme FK728_02759 PF13193 AMP-binding enzyme C-terminal domain FK728_02759 PF00550 Phosphopantetheine attachment site FK728_02759 PF00668 Condensation domain FK728_02759 PF00975 Thioesterase domain FK728_02762 PF01272 Transcription elongation factor, GreA/GreB, C-term FK728_02762 PF03449 Transcription elongation factor, N-terminal FK728_02763 PF00497 Bacterial extracellular solute-binding proteins, family 3 FK728_02763 PF01464 Transglycosylase SLT domain FK728_02765 PF01171 PP-loop family FK728_02766 PF01464 Transglycosylase SLT domain FK728_02767 PF01435 Peptidase family M48 FK728_02769 PF00873 AcrB/AcrD/AcrF family FK728_02770 PF03009 Glycerophosphoryl diester phosphodiesterase family FK728_02771 PF00753 Metallo-beta-lactamase superfamily FK728_02772 PF01219 Prokaryotic diacylglycerol kinase FK728_02773 PF00118 TCP-1/cpn60 chaperonin family FK728_02774 PF00166 Chaperonin 10 Kd subunit FK728_02775 PF00149 Calcineurin-like phosphoesterase FK728_02776 PF00781 Diacylglycerol kinase catalytic domain FK728_02777 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FK728_02777 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FK728_02778 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FK728_02778 PF01266 FAD dependent oxidoreductase FK728_02779 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FK728_02779 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FK728_02780 PF00083 Sugar (and other) transporter FK728_02783 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FK728_02783 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FK728_02786 PF09423 PhoD-like phosphatase FK728_02786 PF16655 PhoD-like phosphatase, N-terminal domain FK728_02790 PF00809 Pterin binding enzyme FK728_02791 PF01434 Peptidase family M41 FK728_02791 PF06480 FtsH Extracellular FK728_02791 PF17862 AAA+ lid domain FK728_02791 PF00004 ATPase family associated with various cellular activities (AAA) FK728_02792 PF01728 FtsJ-like methyltransferase FK728_02793 PF01985 CRS1 / YhbY (CRM) domain FK728_02796 PF00117 Glutamine amidotransferase class-I FK728_02796 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FK728_02797 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FK728_02797 PF02142 MGS-like domain FK728_02797 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FK728_02798 PF01272 Transcription elongation factor, GreA/GreB, C-term FK728_02798 PF03449 Transcription elongation factor, N-terminal FK728_02799 PF00440 Bacterial regulatory proteins, tetR family FK728_02800 PF01042 Endoribonuclease L-PSP FK728_02801 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_02802 PF00582 Universal stress protein family FK728_02803 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FK728_02805 PF09587 Bacterial capsule synthesis protein PGA_cap FK728_02807 PF13737 Transposase DDE domain FK728_02810 PF00999 Sodium/hydrogen exchanger family FK728_02811 PF04228 Putative neutral zinc metallopeptidase FK728_02812 PF05661 Protein of unknown function (DUF808) FK728_02813 PF00579 tRNA synthetases class I (W and Y) FK728_02814 PF00549 CoA-ligase FK728_02814 PF02629 CoA binding domain FK728_02815 PF08442 ATP-grasp domain FK728_02815 PF00549 CoA-ligase FK728_02816 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FK728_02816 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_02817 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FK728_02817 PF00364 Biotin-requiring enzyme FK728_02817 PF02817 e3 binding domain FK728_02818 PF16078 2-oxoglutarate dehydrogenase N-terminus FK728_02818 PF16870 2-oxoglutarate dehydrogenase C-terminal FK728_02818 PF00676 Dehydrogenase E1 component FK728_02818 PF02779 Transketolase, pyrimidine binding domain FK728_02819 PF13085 2Fe-2S iron-sulfur cluster binding domain FK728_02820 PF02910 Fumarate reductase flavoprotein C-term FK728_02820 PF00890 FAD binding domain FK728_02821 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FK728_02822 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FK728_02823 PF00285 Citrate synthase, C-terminal domain FK728_02828 PF04545 Sigma-70, region 4 FK728_02828 PF04539 Sigma-70 region 3 FK728_02828 PF04542 Sigma-70 region 2 FK728_02828 PF00140 Sigma-70 factor, region 1.2 FK728_02828 PF03979 Sigma-70 factor, region 1.1 FK728_02828 PF04546 Sigma-70, non-essential region FK728_02829 PF04359 Protein of unknown function (DUF493) FK728_02830 PF03099 Biotin/lipoate A/B protein ligase family FK728_02832 PF00465 Iron-containing alcohol dehydrogenase FK728_02833 PF13520 Amino acid permease FK728_02834 PF03358 NADPH-dependent FMN reductase FK728_02835 PF01638 HxlR-like helix-turn-helix FK728_02836 PF00588 SpoU rRNA Methylase family FK728_02837 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FK728_02837 PF14824 Sirohaem biosynthesis protein central FK728_02837 PF10414 Sirohaem synthase dimerisation region FK728_02838 PF02403 Seryl-tRNA synthetase N-terminal domain FK728_02838 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FK728_02840 PF03548 Outer membrane lipoprotein carrier protein LolA FK728_02841 PF01016 Ribosomal L27 protein FK728_02842 PF00829 Ribosomal prokaryotic L21 protein FK728_02843 PF00348 Polyprenyl synthetase FK728_02845 PF01569 PAP2 superfamily FK728_02846 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_02846 PF00529 HlyD membrane-fusion protein of T1SS FK728_02847 PF00873 AcrB/AcrD/AcrF family FK728_02848 PF02321 Outer membrane efflux protein FK728_02849 PF01906 Putative heavy-metal-binding FK728_02850 PF01906 Putative heavy-metal-binding FK728_02854 PF08264 Anticodon-binding domain of tRNA FK728_02854 PF10458 Valyl tRNA synthetase tRNA binding arm FK728_02854 PF00133 tRNA synthetases class I (I, L, M and V) FK728_02859 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_02859 PF03466 LysR substrate binding domain FK728_02860 PF00909 Ammonium Transporter Family FK728_02861 PF00909 Ammonium Transporter Family FK728_02863 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_02863 PF08521 Two-component sensor kinase N-terminal FK728_02863 PF00512 His Kinase A (phospho-acceptor) domain FK728_02864 PF00486 Transcriptional regulatory protein, C terminal FK728_02864 PF00072 Response regulator receiver domain FK728_02865 PF00884 Sulfatase FK728_02865 PF08019 Phosphoethanolamine transferase EptA/EptB FK728_02869 PF01734 Patatin-like phospholipase FK728_02871 PF01145 SPFH domain / Band 7 family FK728_02872 PF04237 YjbR FK728_02873 PF00348 Polyprenyl synthetase FK728_02874 PF04303 PrpF protein FK728_02875 PF00324 Amino acid permease FK728_02877 PF00589 Phage integrase family FK728_02877 PF13356 Arm DNA-binding domain FK728_02885 PF00772 DnaB-like helicase N terminal domain FK728_02885 PF03796 DnaB-like helicase C terminal domain FK728_02895 PF00004 ATPase family associated with various cellular activities (AAA) FK728_02897 PF01965 DJ-1/PfpI family FK728_02898 PF00698 Acyl transferase domain FK728_02898 PF08240 Alcohol dehydrogenase GroES-like domain FK728_02898 PF08990 Erythronolide synthase docking FK728_02898 PF09277 Erythronolide synthase, docking FK728_02898 PF00109 Beta-ketoacyl synthase, N-terminal domain FK728_02898 PF16197 Ketoacyl-synthetase C-terminal extension FK728_02898 PF08659 KR domain FK728_02898 PF00550 Phosphopantetheine attachment site FK728_02898 PF14765 Polyketide synthase dehydratase FK728_02898 PF02801 Beta-ketoacyl synthase, C-terminal domain FK728_02899 PF12833 Helix-turn-helix domain FK728_02899 PF06719 AraC-type transcriptional regulator N-terminus FK728_02900 PF02673 Bacitracin resistance protein BacA FK728_02904 PF02525 Flavodoxin-like fold FK728_02907 PF01507 Phosphoadenosine phosphosulfate reductase family FK728_02908 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FK728_02908 PF06974 Protein of unknown function (DUF1298) FK728_02910 PF00575 S1 RNA binding domain FK728_02910 PF10150 Ribonuclease E/G family FK728_02911 PF02545 Maf-like protein FK728_02912 PF04093 rod shape-determining protein MreD FK728_02913 PF04085 rod shape-determining protein MreC FK728_02915 PF02686 Glu-tRNAGln amidotransferase C subunit FK728_02916 PF01425 Amidase FK728_02917 PF02934 GatB/GatE catalytic domain FK728_02917 PF02637 GatB domain FK728_02923 PF05649 Peptidase family M13 FK728_02923 PF01431 Peptidase family M13 FK728_02924 PF05992 SbmA/BacA-like family FK728_02925 PF00291 Pyridoxal-phosphate dependent enzyme FK728_02925 PF13291 ACT domain FK728_02926 PF01734 Patatin-like phospholipase FK728_02927 PF01235 Sodium:alanine symporter family FK728_02929 PF00881 Nitroreductase family FK728_02930 PF07690 Major Facilitator Superfamily FK728_02931 PF12805 FUSC-like inner membrane protein yccS FK728_02933 PF00667 FAD binding domain FK728_02933 PF00258 Flavodoxin FK728_02933 PF00175 Oxidoreductase NAD-binding domain FK728_02941 PF03734 L,D-transpeptidase catalytic domain FK728_02941 PF17969 L,D-transpeptidase C-terminal domain FK728_02942 PF04304 Protein of unknown function (DUF454) FK728_02944 PF08085 Entericidin EcnA/B family FK728_02945 PF07687 Peptidase dimerisation domain FK728_02945 PF01546 Peptidase family M20/M25/M40 FK728_02947 PF01584 CheW-like domain FK728_02947 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_02947 PF01627 Hpt domain FK728_02947 PF00072 Response regulator receiver domain FK728_02948 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FK728_02948 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FK728_02949 PF01584 CheW-like domain FK728_02950 PF00072 Response regulator receiver domain FK728_02951 PF00072 Response regulator receiver domain FK728_02954 PF00873 AcrB/AcrD/AcrF family FK728_02955 PF04073 Aminoacyl-tRNA editing domain FK728_02955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FK728_02955 PF03129 Anticodon binding domain FK728_02956 PF07411 Domain of unknown function (DUF1508) FK728_02957 PF03831 PhnA domain FK728_02957 PF08274 PhnA Zinc-Ribbon FK728_02958 PF04343 Protein of unknown function, DUF488 FK728_02960 PF01571 Aminomethyltransferase folate-binding domain FK728_02961 PF10411 Disulfide bond isomerase protein N-terminus FK728_02961 PF13098 Thioredoxin-like domain FK728_02963 PF03547 Membrane transport protein FK728_02964 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK728_02965 PF00593 TonB dependent receptor FK728_02965 PF07715 TonB-dependent Receptor Plug Domain FK728_02966 PF02245 Methylpurine-DNA glycosylase (MPG) FK728_02967 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FK728_02967 PF06827 Zinc finger found in FPG and IleRS FK728_02967 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FK728_02970 PF01741 Large-conductance mechanosensitive channel, MscL FK728_02972 PF00860 Permease family FK728_02973 PF05175 Methyltransferase small domain FK728_02973 PF08468 Methyltransferase small domain N-terminal FK728_02974 PF00324 Amino acid permease FK728_02975 PF01139 tRNA-splicing ligase RtcB FK728_02977 PF00691 OmpA family FK728_02977 PF13505 Outer membrane protein beta-barrel domain FK728_02979 PF02803 Thiolase, C-terminal domain FK728_02979 PF00108 Thiolase, N-terminal domain FK728_02981 PF00893 Small Multidrug Resistance protein FK728_02983 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FK728_02983 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FK728_02984 PF01011 PQQ enzyme repeat FK728_02985 PF04966 Carbohydrate-selective porin, OprB family FK728_02986 PF02515 CoA-transferase family III FK728_02987 PF12833 Helix-turn-helix domain FK728_02987 PF02311 AraC-like ligand binding domain FK728_02988 PF02803 Thiolase, C-terminal domain FK728_02988 PF00108 Thiolase, N-terminal domain FK728_02989 PF00378 Enoyl-CoA hydratase/isomerase FK728_02989 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FK728_02989 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FK728_02994 PF03006 Haemolysin-III related FK728_02995 PF00083 Sugar (and other) transporter FK728_02995 PF07690 Major Facilitator Superfamily FK728_02997 PF02810 SEC-C motif FK728_02997 PF07517 SecA DEAD-like domain FK728_02997 PF01043 SecA preprotein cross-linking domain FK728_02997 PF07516 SecA Wing and Scaffold domain FK728_02998 PF10417 C-terminal domain of 1-Cys peroxiredoxin FK728_02998 PF00578 AhpC/TSA family FK728_02999 PF00753 Metallo-beta-lactamase superfamily FK728_03002 PF02875 Mur ligase family, glutamate ligase domain FK728_03002 PF08245 Mur ligase middle domain FK728_03003 PF01039 Carboxyl transferase domain FK728_03004 PF00290 Tryptophan synthase alpha chain FK728_03009 PF00291 Pyridoxal-phosphate dependent enzyme FK728_03010 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FK728_03011 PF07715 TonB-dependent Receptor Plug Domain FK728_03011 PF00593 TonB dependent receptor FK728_03012 PF01923 Cobalamin adenosyltransferase FK728_03016 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FK728_03017 PF00486 Transcriptional regulatory protein, C terminal FK728_03017 PF00072 Response regulator receiver domain FK728_03018 PF00512 His Kinase A (phospho-acceptor) domain FK728_03018 PF00672 HAMP domain FK728_03018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_03020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_03020 PF12806 Acetyl-CoA dehydrogenase C-terminal like FK728_03020 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_03020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_03021 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_03021 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_03021 PF12806 Acetyl-CoA dehydrogenase C-terminal like FK728_03021 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_03022 PF06146 Phosphate-starvation-inducible E FK728_03028 PF00593 TonB dependent receptor FK728_03028 PF07715 TonB-dependent Receptor Plug Domain FK728_03030 PF01336 OB-fold nucleic acid binding domain FK728_03030 PF02938 GAD domain FK728_03030 PF00152 tRNA synthetases class II (D, K and N) FK728_03035 PF00535 Glycosyl transferase family 2 FK728_03037 PF00534 Glycosyl transferases group 1 FK728_03037 PF13439 Glycosyltransferase Family 4 FK728_03038 PF01522 Polysaccharide deacetylase FK728_03040 PF01063 Amino-transferase class IV FK728_03041 PF08335 GlnD PII-uridylyltransferase FK728_03041 PF03710 Glutamate-ammonia ligase adenylyltransferase FK728_03042 PF00512 His Kinase A (phospho-acceptor) domain FK728_03042 PF07689 KaiB domain FK728_03042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_03044 PF02547 Queuosine biosynthesis protein FK728_03048 PF01702 Queuine tRNA-ribosyltransferase FK728_03049 PF02699 Preprotein translocase subunit FK728_03050 PF13721 SecD export protein N-terminal TM region FK728_03050 PF07549 SecD/SecF GG Motif FK728_03050 PF02355 Protein export membrane protein FK728_03051 PF07549 SecD/SecF GG Motif FK728_03051 PF02355 Protein export membrane protein FK728_03052 PF04127 DNA / pantothenate metabolism flavoprotein FK728_03052 PF02441 Flavoprotein FK728_03053 PF04002 RadC-like JAB domain FK728_03054 PF01062 Bestrophin, RFP-TM, chloride channel FK728_03055 PF02811 PHP domain FK728_03056 PF04279 Intracellular septation protein A FK728_03057 PF03795 YCII-related domain FK728_03059 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FK728_03059 PF01266 FAD dependent oxidoreductase FK728_03061 PF04461 Protein of unknown function (DUF520) FK728_03063 PF03061 Thioesterase superfamily FK728_03064 PF00085 Thioredoxin FK728_03065 PF00561 alpha/beta hydrolase fold FK728_03066 PF04273 Putative phosphatase (DUF442) FK728_03066 PF00753 Metallo-beta-lactamase superfamily FK728_03068 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_03068 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FK728_03075 PF17152 Periplasmic sensor domain FK728_03075 PF00990 Diguanylate cyclase, GGDEF domain FK728_03076 PF01389 OmpA-like transmembrane domain FK728_03076 PF00691 OmpA family FK728_03077 PF00149 Calcineurin-like phosphoesterase FK728_03077 PF10518 TAT (twin-arginine translocation) pathway signal sequence FK728_03078 PF13091 PLD-like domain FK728_03080 PF16360 GTP-binding GTPase Middle Region FK728_03080 PF01926 50S ribosome-binding GTPase FK728_03080 PF13167 GTP-binding GTPase N-terminal FK728_03084 PF00149 Calcineurin-like phosphoesterase FK728_03085 PF00398 Ribosomal RNA adenine dimethylase FK728_03086 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FK728_03087 PF00572 Ribosomal protein L13 FK728_03088 PF00380 Ribosomal protein S9/S16 FK728_03089 PF13417 Glutathione S-transferase, N-terminal domain FK728_03089 PF00043 Glutathione S-transferase, C-terminal domain FK728_03090 PF04386 Stringent starvation protein B FK728_03092 PF00364 Biotin-requiring enzyme FK728_03092 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FK728_03092 PF00289 Biotin carboxylase, N-terminal domain FK728_03092 PF02785 Biotin carboxylase C-terminal domain FK728_03093 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FK728_03093 PF00378 Enoyl-CoA hydratase/isomerase FK728_03093 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FK728_03094 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_03094 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_03094 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_03095 PF01039 Carboxyl transferase domain FK728_03098 PF00440 Bacterial regulatory proteins, tetR family FK728_03098 PF17932 Tetracyclin repressor-like, C-terminal domain FK728_03099 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_03099 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_03099 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_03108 PF01066 CDP-alcohol phosphatidyltransferase FK728_03109 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FK728_03113 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FK728_03113 PF00056 lactate/malate dehydrogenase, NAD binding domain FK728_03115 PF01551 Peptidase family M23 FK728_03115 PF01464 Transglycosylase SLT domain FK728_03115 PF10145 Phage-related minor tail protein FK728_03116 PF00919 Uncharacterized protein family UPF0004 FK728_03116 PF01938 TRAM domain FK728_03116 PF04055 Radical SAM superfamily FK728_03117 PF02562 PhoH-like protein FK728_03118 PF02130 Uncharacterized protein family UPF0054 FK728_03123 PF03358 NADPH-dependent FMN reductase FK728_03124 PF03631 Virulence factor BrkB FK728_03125 PF00892 EamA-like transporter family FK728_03126 PF12833 Helix-turn-helix domain FK728_03127 PF01557 Fumarylacetoacetate (FAA) hydrolase family FK728_03136 PF17876 Cold shock domain FK728_03136 PF00575 S1 RNA binding domain FK728_03136 PF00773 RNB domain FK728_03136 PF08206 Ribonuclease B OB domain FK728_03136 PF08461 Ribonuclease R winged-helix domain FK728_03137 PF01432 Peptidase family M3 FK728_03138 PF09526 Probable metal-binding protein (DUF2387) FK728_03145 PF03937 Flavinator of succinate dehydrogenase FK728_03146 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_03146 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_03146 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_03147 PF00743 Flavin-binding monooxygenase-like FK728_03148 PF01196 Ribosomal protein L17 FK728_03149 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FK728_03149 PF01000 RNA polymerase Rpb3/RpoA insert domain FK728_03149 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FK728_03150 PF00163 Ribosomal protein S4/S9 N-terminal domain FK728_03150 PF01479 S4 domain FK728_03151 PF00411 Ribosomal protein S11 FK728_03152 PF00416 Ribosomal protein S13/S18 FK728_03153 PF00444 Ribosomal protein L36 FK728_03154 PF00344 SecY translocase FK728_03155 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FK728_03156 PF00327 Ribosomal protein L30p/L7e FK728_03157 PF03719 Ribosomal protein S5, C-terminal domain FK728_03157 PF00333 Ribosomal protein S5, N-terminal domain FK728_03158 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FK728_03159 PF00347 Ribosomal protein L6 FK728_03160 PF00410 Ribosomal protein S8 FK728_03161 PF00253 Ribosomal protein S14p/S29e FK728_03162 PF00673 ribosomal L5P family C-terminus FK728_03162 PF00281 Ribosomal protein L5 FK728_03163 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FK728_03163 PF00467 KOW motif FK728_03164 PF00238 Ribosomal protein L14p/L23e FK728_03165 PF00366 Ribosomal protein S17 FK728_03166 PF00831 Ribosomal L29 protein FK728_03167 PF00252 Ribosomal protein L16p/L10e FK728_03168 PF07650 KH domain FK728_03168 PF00189 Ribosomal protein S3, C-terminal domain FK728_03169 PF00237 Ribosomal protein L22p/L17e FK728_03170 PF00203 Ribosomal protein S19 FK728_03171 PF00181 Ribosomal Proteins L2, RNA binding domain FK728_03171 PF03947 Ribosomal Proteins L2, C-terminal domain FK728_03172 PF00276 Ribosomal protein L23 FK728_03173 PF00573 Ribosomal protein L4/L1 family FK728_03174 PF00297 Ribosomal protein L3 FK728_03175 PF00338 Ribosomal protein S10p/S20e FK728_03176 PF00117 Glutamine amidotransferase class-I FK728_03177 PF01053 Cys/Met metabolism PLP-dependent enzyme FK728_03178 PF05872 Bacterial protein of unknown function (DUF853) FK728_03179 PF00970 Oxidoreductase FAD-binding domain FK728_03179 PF00175 Oxidoreductase NAD-binding domain FK728_03179 PF00042 Globin FK728_03180 PF02082 Transcriptional regulator FK728_03181 PF01926 50S ribosome-binding GTPase FK728_03183 PF00375 Sodium:dicarboxylate symporter family FK728_03185 PF01553 Acyltransferase FK728_03188 PF00270 DEAD/DEAH box helicase FK728_03188 PF17191 RecG wedge domain FK728_03188 PF00271 Helicase conserved C-terminal domain FK728_03189 PF00156 Phosphoribosyl transferase domain FK728_03190 PF00293 NUDIX domain FK728_03191 PF03641 Possible lysine decarboxylase FK728_03192 PF01544 CorA-like Mg2+ transporter protein FK728_03194 PF05494 MlaC protein FK728_03196 PF02405 Permease MlaE FK728_03197 PF00005 ABC transporter FK728_03199 PF03880 DbpA RNA binding domain FK728_03199 PF00270 DEAD/DEAH box helicase FK728_03199 PF12343 Cold shock protein DEAD box A FK728_03199 PF00271 Helicase conserved C-terminal domain FK728_03200 PF00459 Inositol monophosphatase family FK728_03201 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FK728_03201 PF02780 Transketolase, C-terminal domain FK728_03201 PF02779 Transketolase, pyrimidine binding domain FK728_03202 PF00925 GTP cyclohydrolase II FK728_03203 PF01218 Coproporphyrinogen III oxidase FK728_03204 PF08501 Shikimate dehydrogenase substrate binding domain FK728_03204 PF01488 Shikimate / quinate 5-dehydrogenase FK728_03204 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FK728_03206 PF02770 Acyl-CoA dehydrogenase, middle domain FK728_03206 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK728_03206 PF12806 Acetyl-CoA dehydrogenase C-terminal like FK728_03206 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK728_03208 PF04024 PspC domain FK728_03209 PF00571 CBS domain FK728_03214 PF02091 Glycyl-tRNA synthetase alpha subunit FK728_03215 PF05746 DALR anticodon binding domain FK728_03215 PF02092 Glycyl-tRNA synthetase beta subunit FK728_03219 PF00892 EamA-like transporter family FK728_03220 PF03466 LysR substrate binding domain FK728_03220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_03226 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FK728_03227 PF04996 Succinylarginine dihydrolase FK728_03228 PF00171 Aldehyde dehydrogenase family FK728_03229 PF04958 Arginine N-succinyltransferase beta subunit FK728_03230 PF00202 Aminotransferase class-III FK728_03231 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FK728_03231 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FK728_03232 PF00324 Amino acid permease FK728_03234 PF08241 Methyltransferase domain FK728_03239 PF01594 AI-2E family transporter FK728_03240 PF00080 Copper/zinc superoxide dismutase (SODC) FK728_03241 PF12805 FUSC-like inner membrane protein yccS FK728_03242 PF07690 Major Facilitator Superfamily FK728_03244 PF02525 Flavodoxin-like fold FK728_03245 PF03992 Antibiotic biosynthesis monooxygenase FK728_03247 PF01565 FAD binding domain FK728_03247 PF02913 FAD linked oxidases, C-terminal domain FK728_03248 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FK728_03248 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FK728_03249 PF00892 EamA-like transporter family FK728_03250 PF00892 EamA-like transporter family FK728_03252 PF01925 Sulfite exporter TauE/SafE FK728_03253 PF01509 TruB family pseudouridylate synthase (N terminal domain) FK728_03253 PF09157 Pseudouridine synthase II TruB, C-terminal FK728_03253 PF16198 tRNA pseudouridylate synthase B C-terminal domain FK728_03254 PF03280 Proteobacterial lipase chaperone protein FK728_03255 PF00561 alpha/beta hydrolase fold FK728_03256 PF01245 Ribosomal protein L19 FK728_03257 PF01746 tRNA (Guanine-1)-methyltransferase FK728_03258 PF05239 PRC-barrel domain FK728_03258 PF01782 RimM N-terminal domain FK728_03259 PF00886 Ribosomal protein S16 FK728_03267 PF02401 LytB protein FK728_03268 PF00625 Guanylate kinase FK728_03269 PF01192 RNA polymerase Rpb6 FK728_03270 PF02824 TGS domain FK728_03270 PF13291 ACT domain FK728_03270 PF04607 Region found in RelA / SpoT proteins FK728_03271 PF01042 Endoribonuclease L-PSP FK728_03272 PF04324 BFD-like [2Fe-2S] binding domain FK728_03273 PF00210 Ferritin-like domain FK728_03274 PF04932 O-Antigen ligase FK728_03274 PF15864 Protein glycosylation ligase FK728_03274 PF11846 Virulence factor membrane-bound polymerase, C-terminal FK728_03276 PF00114 Pilin (bacterial filament) FK728_03276 PF07963 Prokaryotic N-terminal methylation motif FK728_03278 PF04536 TPM domain FK728_03279 PF04011 LemA family FK728_03281 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FK728_03281 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK728_03282 PF00310 Glutamine amidotransferases class-II FK728_03282 PF01645 Conserved region in glutamate synthase FK728_03282 PF04898 Glutamate synthase central domain FK728_03282 PF01493 GXGXG motif FK728_03284 PF01761 3-dehydroquinate synthase FK728_03285 PF01202 Shikimate kinase FK728_03286 PF07660 Secretin and TonB N terminus short domain FK728_03286 PF03958 Bacterial type II/III secretion system short domain FK728_03286 PF00263 Bacterial type II and III secretion system protein FK728_03286 PF11741 AMIN domain FK728_03291 PF17092 Penicillin-binding protein OB-like domain FK728_03291 PF00912 Transglycosylase FK728_03291 PF00905 Penicillin binding protein transpeptidase domain FK728_03292 PF13847 Methyltransferase domain FK728_03294 PF00953 Glycosyl transferase family 4 FK728_03295 PF08245 Mur ligase middle domain FK728_03295 PF01225 Mur ligase family, catalytic domain FK728_03295 PF02875 Mur ligase family, glutamate ligase domain FK728_03296 PF02875 Mur ligase family, glutamate ligase domain FK728_03296 PF01225 Mur ligase family, catalytic domain FK728_03296 PF08245 Mur ligase middle domain FK728_03297 PF03717 Penicillin-binding Protein dimerisation domain FK728_03297 PF00905 Penicillin binding protein transpeptidase domain FK728_03299 PF01795 MraW methylase family FK728_03302 PF00749 tRNA synthetases class I (E and Q), catalytic domain FK728_03305 PF00324 Amino acid permease FK728_03311 PF01545 Cation efflux family FK728_03312 PF00873 AcrB/AcrD/AcrF family FK728_03313 PF00529 HlyD membrane-fusion protein of T1SS FK728_03313 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_03316 PF04191 Phospholipid methyltransferase FK728_03321 PF00005 ABC transporter FK728_03321 PF12848 ABC transporter FK728_03322 PF01053 Cys/Met metabolism PLP-dependent enzyme FK728_03323 PF00106 short chain dehydrogenase FK728_03324 PF00916 Sulfate permease family FK728_03324 PF01740 STAS domain FK728_03326 PF16921 Tex protein YqgF-like domain FK728_03326 PF00575 S1 RNA binding domain FK728_03326 PF09371 Tex-like protein N-terminal domain FK728_03326 PF17674 HHH domain FK728_03327 PF00486 Transcriptional regulatory protein, C terminal FK728_03327 PF00072 Response regulator receiver domain FK728_03328 PF00512 His Kinase A (phospho-acceptor) domain FK728_03328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_03328 PF00672 HAMP domain FK728_03329 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FK728_03329 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FK728_03330 PF00583 Acetyltransferase (GNAT) family FK728_03334 PF00475 Imidazoleglycerol-phosphate dehydratase FK728_03335 PF00117 Glutamine amidotransferase class-I FK728_03338 PF00977 Histidine biosynthesis protein FK728_03339 PF00664 ABC transporter transmembrane region FK728_03339 PF00005 ABC transporter FK728_03342 PF03992 Antibiotic biosynthesis monooxygenase FK728_03345 PF01636 Phosphotransferase enzyme family FK728_03346 PF00977 Histidine biosynthesis protein FK728_03349 PF00230 Major intrinsic protein FK728_03354 PF02705 K+ potassium transporter FK728_03359 PF02525 Flavodoxin-like fold FK728_03360 PF01638 HxlR-like helix-turn-helix FK728_03366 PF01638 HxlR-like helix-turn-helix FK728_03370 PF13333 Integrase core domain FK728_03370 PF00665 Integrase core domain FK728_03370 PF13276 HTH-like domain FK728_03371 PF02311 AraC-like ligand binding domain FK728_03371 PF12833 Helix-turn-helix domain FK728_03372 PF00248 Aldo/keto reductase family FK728_03376 PF03466 LysR substrate binding domain FK728_03376 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_03377 PF07690 Major Facilitator Superfamily FK728_03383 PF01593 Flavin containing amine oxidoreductase FK728_03384 PF02678 Pirin FK728_03384 PF05726 Pirin C-terminal cupin domain FK728_03385 PF00857 Isochorismatase family FK728_03386 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_03387 PF00171 Aldehyde dehydrogenase family FK728_03388 PF00202 Aminotransferase class-III FK728_03389 PF00392 Bacterial regulatory proteins, gntR family FK728_03389 PF00155 Aminotransferase class I and II FK728_03390 PF00324 Amino acid permease FK728_03392 PF03591 AzlC protein FK728_03394 PF00436 Single-strand binding protein family FK728_03395 PF07690 Major Facilitator Superfamily FK728_03397 PF08543 Phosphomethylpyrimidine kinase FK728_03397 PF03070 TENA/THI-4/PQQC family FK728_03397 PF02581 Thiamine monophosphate synthase FK728_03398 PF06942 GlpM protein FK728_03400 PF08240 Alcohol dehydrogenase GroES-like domain FK728_03400 PF00107 Zinc-binding dehydrogenase FK728_03401 PF00440 Bacterial regulatory proteins, tetR family FK728_03401 PF16925 Tetracyclin repressor-like, C-terminal domain FK728_03402 PF00005 ABC transporter FK728_03402 PF17755 UvrA DNA-binding domain FK728_03402 PF17760 UvrA interaction domain FK728_03403 PF17158 Membrane-associated sensor, integral membrane domain FK728_03403 PF00990 Diguanylate cyclase, GGDEF domain FK728_03405 PF02028 BCCT, betaine/carnitine/choline family transporter FK728_03407 PF00474 Sodium:solute symporter family FK728_03408 PF04341 Protein of unknown function, DUF485 FK728_03409 PF00512 His Kinase A (phospho-acceptor) domain FK728_03409 PF00072 Response regulator receiver domain FK728_03409 PF01627 Hpt domain FK728_03409 PF00672 HAMP domain FK728_03409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_03411 PF00196 Bacterial regulatory proteins, luxR family FK728_03411 PF00072 Response regulator receiver domain FK728_03412 PF03358 NADPH-dependent FMN reductase FK728_03413 PF00296 Luciferase-like monooxygenase FK728_03414 PF01037 Lrp/AsnC ligand binding domain FK728_03415 PF00857 Isochorismatase family FK728_03416 PF00501 AMP-binding enzyme FK728_03416 PF13193 AMP-binding enzyme C-terminal domain FK728_03416 PF16177 Acetyl-coenzyme A synthetase N-terminus FK728_03420 PF00924 Mechanosensitive ion channel FK728_03421 PF04452 RNA methyltransferase FK728_03422 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FK728_03423 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK728_03426 PF03462 PCRF domain FK728_03426 PF00472 RF-1 domain FK728_03428 PF01368 DHH family FK728_03428 PF02272 DHHA1 domain FK728_03428 PF17768 RecJ OB domain FK728_03429 PF01243 Pyridoxamine 5'-phosphate oxidase FK728_03429 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FK728_03430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FK728_03430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FK728_03430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FK728_03430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FK728_03431 PF00571 CBS domain FK728_03431 PF00478 IMP dehydrogenase / GMP reductase domain FK728_03432 PF03692 Putative zinc- or iron-chelating domain FK728_03433 PF01613 Flavin reductase like domain FK728_03433 PF00258 Flavodoxin FK728_03434 PF07715 TonB-dependent Receptor Plug Domain FK728_03434 PF00593 TonB dependent receptor FK728_03435 PF01169 Uncharacterized protein family UPF0016 FK728_03437 PF02817 e3 binding domain FK728_03437 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FK728_03437 PF00364 Biotin-requiring enzyme FK728_03438 PF17831 Pyruvate dehydrogenase E1 component middle domain FK728_03438 PF00456 Transketolase, thiamine diphosphate binding domain FK728_03439 PF01551 Peptidase family M23 FK728_03441 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FK728_03442 PF00091 Tubulin/FtsZ family, GTPase domain FK728_03442 PF12327 FtsZ family, C-terminal domain FK728_03443 PF02491 SHS2 domain inserted in FTSA FK728_03444 PF08478 POTRA domain, FtsQ-type FK728_03444 PF03799 Cell division protein FtsQ FK728_03445 PF01820 D-ala D-ala ligase N-terminus FK728_03445 PF07478 D-ala D-ala ligase C-terminus FK728_03446 PF02875 Mur ligase family, glutamate ligase domain FK728_03446 PF08245 Mur ligase middle domain FK728_03446 PF01225 Mur ligase family, catalytic domain FK728_03447 PF03033 Glycosyltransferase family 28 N-terminal domain FK728_03447 PF04101 Glycosyltransferase family 28 C-terminal domain FK728_03448 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FK728_03448 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FK728_03450 PF07715 TonB-dependent Receptor Plug Domain FK728_03450 PF00593 TonB dependent receptor FK728_03451 PF00156 Phosphoribosyl transferase domain FK728_03452 PF03372 Endonuclease/Exonuclease/phosphatase family FK728_03453 PF03960 ArsC family FK728_03455 PF07859 alpha/beta hydrolase fold FK728_03456 PF00990 Diguanylate cyclase, GGDEF domain FK728_03456 PF07694 5TMR of 5TMR-LYT FK728_03457 PF11412 Disulphide bond corrector protein DsbC FK728_03457 PF02683 Cytochrome C biogenesis protein transmembrane region FK728_03463 PF00576 HIUase/Transthyretin family FK728_03464 PF00860 Permease family FK728_03466 PF01494 FAD binding domain FK728_03467 PF03561 Allantoicase repeat FK728_03468 PF04115 Ureidoglycolate lyase FK728_03469 PF00986 DNA gyrase B subunit, carboxyl terminus FK728_03469 PF01751 Toprim domain FK728_03469 PF00204 DNA gyrase B FK728_03469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_03470 PF05728 Uncharacterised protein family (UPF0227) FK728_03477 PF01476 LysM domain FK728_03477 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FK728_03478 PF04717 Type VI secretion system, phage-baseplate injector FK728_03479 PF02600 Disulfide bond formation protein DsbB FK728_03480 PF04262 Glutamate-cysteine ligase FK728_03483 PF04286 Protein of unknown function (DUF445) FK728_03484 PF00155 Aminotransferase class I and II FK728_03485 PF01554 MatE FK728_03486 PF00106 short chain dehydrogenase FK728_03488 PF00072 Response regulator receiver domain FK728_03488 PF00486 Transcriptional regulatory protein, C terminal FK728_03489 PF00512 His Kinase A (phospho-acceptor) domain FK728_03489 PF00989 PAS fold FK728_03489 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK728_03489 PF11808 Phosphate regulon sensor protein PhoR FK728_03491 PF02666 Phosphatidylserine decarboxylase FK728_03492 PF00581 Rhodanese-like domain FK728_03493 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FK728_03493 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FK728_03494 PF02580 D-Tyr-tRNA(Tyr) deacylase FK728_03499 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FK728_03499 PF00925 GTP cyclohydrolase II FK728_03500 PF00885 6,7-dimethyl-8-ribityllumazine synthase FK728_03501 PF01029 NusB family FK728_03502 PF00586 AIR synthase related protein, N-terminal domain FK728_03502 PF02769 AIR synthase related protein, C-terminal domain FK728_03503 PF04608 Phosphatidylglycerophosphatase A FK728_03504 PF00132 Bacterial transferase hexapeptide (six repeats) FK728_03504 PF14602 Hexapeptide repeat of succinyl-transferase FK728_03504 PF12804 MobA-like NTP transferase domain FK728_03505 PF01380 SIS domain FK728_03506 PF01177 Asp/Glu/Hydantoin racemase FK728_03509 PF00491 Arginase family FK728_03510 PF01979 Amidohydrolase family FK728_03511 PF00324 Amino acid permease FK728_03512 PF00221 Aromatic amino acid lyase FK728_03513 PF17392 Urocanase C-terminal domain FK728_03513 PF01175 Urocanase Rossmann-like domain FK728_03513 PF17391 Urocanase N-terminal domain FK728_03514 PF05962 HutD FK728_03515 PF00392 Bacterial regulatory proteins, gntR family FK728_03515 PF07702 UTRA domain FK728_03517 PF02492 CobW/HypB/UreG, nucleotide-binding domain FK728_03517 PF07683 Cobalamin synthesis protein cobW C-terminal domain FK728_03519 PF00324 Amino acid permease FK728_03521 PF02798 Glutathione S-transferase, N-terminal domain FK728_03521 PF14497 Glutathione S-transferase, C-terminal domain FK728_03522 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FK728_03524 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FK728_03525 PF04463 Protein of unknown function (DUF523) FK728_03526 PF01554 MatE FK728_03527 PF01758 Sodium Bile acid symporter family FK728_03528 PF00857 Isochorismatase family FK728_03529 PF00701 Dihydrodipicolinate synthetase family FK728_03531 PF01259 SAICAR synthetase FK728_03533 PF01226 Formate/nitrite transporter FK728_03534 PF16193 AAA C-terminal domain FK728_03534 PF12002 MgsA AAA+ ATPase C terminal FK728_03534 PF00004 ATPase family associated with various cellular activities (AAA) FK728_03535 PF07995 Glucose / Sorbosone dehydrogenase FK728_03536 PF03692 Putative zinc- or iron-chelating domain FK728_03537 PF07043 Protein of unknown function (DUF1328) FK728_03538 PF02230 Phospholipase/Carboxylesterase FK728_03540 PF14815 NUDIX domain FK728_03540 PF00730 HhH-GPD superfamily base excision DNA repair protein FK728_03540 PF00633 Helix-hairpin-helix motif FK728_03540 PF10576 Iron-sulfur binding domain of endonuclease III FK728_03543 PF03352 Methyladenine glycosylase FK728_03544 PF00107 Zinc-binding dehydrogenase FK728_03544 PF08240 Alcohol dehydrogenase GroES-like domain FK728_03545 PF00155 Aminotransferase class I and II FK728_03545 PF00392 Bacterial regulatory proteins, gntR family FK728_03547 PF03466 LysR substrate binding domain FK728_03547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_03548 PF00248 Aldo/keto reductase family FK728_03549 PF07690 Major Facilitator Superfamily FK728_03551 PF05173 Dihydrodipicolinate reductase, C-terminus FK728_03551 PF01113 Dihydrodipicolinate reductase, N-terminus FK728_03553 PF00226 DnaJ domain FK728_03553 PF01556 DnaJ C terminal domain FK728_03553 PF00684 DnaJ central domain FK728_03555 PF00873 AcrB/AcrD/AcrF family FK728_03556 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK728_03557 PF00440 Bacterial regulatory proteins, tetR family FK728_03557 PF08361 MAATS-type transcriptional repressor, C-terminal region FK728_03558 PF00311 Phosphoenolpyruvate carboxylase FK728_03559 PF00860 Permease family FK728_03560 PF03466 LysR substrate binding domain FK728_03560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK728_03563 PF00920 Dehydratase family FK728_03564 PF00551 Formyl transferase FK728_03564 PF02911 Formyl transferase, C-terminal domain FK728_03565 PF01189 16S rRNA methyltransferase RsmB/F FK728_03565 PF01029 NusB family FK728_03567 PF00209 Sodium:neurotransmitter symporter family FK728_03569 PF00043 Glutathione S-transferase, C-terminal domain FK728_03569 PF02798 Glutathione S-transferase, N-terminal domain FK728_p100003 PF10706 Aminoglycoside-2''-adenylyltransferase FK728_p100006 PF03432 Relaxase/Mobilisation nuclease domain FK728_p200001 PF01051 Initiator Replication protein FK728_p200007 PF00593 TonB dependent receptor FK728_p200007 PF07715 TonB-dependent Receptor Plug Domain FK728_p200009 PF13936 Helix-turn-helix domain FK728_p200009 PF00665 Integrase core domain FK728_p300005 PF01807 CHC2 zinc finger FK728_p300005 PF08275 DNA primase catalytic core, N-terminal domain FK728_p300005 PF10410 DnaB-helicase binding domain of primase FK728_p300012 PF00625 Guanylate kinase FK728_p300015 PF07015 VirC1 protein FK728_p300017 PF00589 Phage integrase family FK728_p300017 PF02899 Phage integrase, N-terminal SAM-like domain FK728_p300025 PF02811 PHP domain FK728_p300025 PF07733 Bacterial DNA polymerase III alpha NTPase domain FK728_p300025 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FK728_p300025 PF14579 Helix-hairpin-helix motif FK728_p300027 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FK728_p300027 PF02811 PHP domain FK728_p300027 PF07733 Bacterial DNA polymerase III alpha NTPase domain FK728_p300027 PF14579 Helix-hairpin-helix motif FK728_p300029 PF02811 PHP domain FK728_p300029 PF14579 Helix-hairpin-helix motif FK728_p300029 PF07733 Bacterial DNA polymerase III alpha NTPase domain FK728_p300029 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FK728_p300032 PF01367 5'-3' exonuclease, C-terminal SAM fold FK728_p300032 PF01612 3'-5' exonuclease FK728_p300032 PF00476 DNA polymerase family A FK728_p300032 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FK728_p300033 PF00154 recA bacterial DNA recombination protein FK728_p300033 PF03161 LAGLIDADG DNA endonuclease family FK728_p300038 PF06470 SMC proteins Flexible Hinge Domain FK728_p300038 PF02463 RecF/RecN/SMC N terminal domain FK728_p300042 PF00317 Ribonucleotide reductase, all-alpha domain FK728_p300042 PF02867 Ribonucleotide reductase, barrel domain FK728_p300042 PF03477 ATP cone domain FK728_p300043 PF00268 Ribonucleotide reductase, small chain FK728_p300049 PF13610 DDE domain FK728_p300051 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FK728_p300051 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FK728_p300051 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FK728_p300051 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FK728_p300052 PF00809 Pterin binding enzyme FK728_p300056 PF00929 Exonuclease FK728_p300067 PF02384 N-6 DNA Methylase FK728_p300067 PF12161 HsdM N-terminal domain FK728_p300070 PF12008 Type I restriction and modification enzyme - subunit R C terminal FK728_p300070 PF18766 SWI2/SNF2 ATPase FK728_p300070 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FK728_p300071 PF13737 Transposase DDE domain FK728_p300079 PF13737 Transposase DDE domain FK728_p300082 PF13737 Transposase DDE domain FK728_p300083 PF00962 Adenosine/AMP deaminase FK728_p300088 PF00239 Resolvase, N terminal domain FK728_p300088 PF02796 Helix-turn-helix domain of resolvase FK728_p300090 PF00665 Integrase core domain FK728_p300090 PF13333 Integrase core domain FK728_p300090 PF13276 HTH-like domain FK728_p300091 PF07690 Major Facilitator Superfamily FK728_p300092 PF13610 DDE domain FK728_p300096 PF00144 Beta-lactamase FK728_p300099 PF01636 Phosphotransferase enzyme family FK728_p300109 PF13005 zinc-finger binding domain of transposase IS66 FK728_p300109 PF13007 Transposase C of IS166 homeodomain FK728_p300109 PF13817 IS66 C-terminal element FK728_p300109 PF03050 Transposase IS66 family FK728_p300111 PF18649 EcpB C-terminal domain FK728_p300112 PF16449 Fimbrillin MatB FK728_p300113 PF13737 Transposase DDE domain FK728_p300117 PF03373 Octapeptide repeat FK728_p300117 PF02216 B domain FK728_p300117 PF04650 YSIRK type signal peptide FK728_p300117 PF01476 LysM domain FK728_p300117 PF00746 LPXTG cell wall anchor motif FK728_p300120 PF17757 UvrB interaction domain FK728_p300120 PF02559 CarD-like/TRCF domain FK728_p300120 PF00270 DEAD/DEAH box helicase FK728_p300120 PF00271 Helicase conserved C-terminal domain FK728_p300120 PF03461 TRCF domain FK728_p300124 PF00005 ABC transporter FK728_p300124 PF09383 NIL domain