locus-tag class description NIH92_00010 PF00083 Sugar (and other) transporter NIH92_00020 PF04324 BFD-like [2Fe-2S] binding domain NIH92_00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_00030 PF01266 FAD dependent oxidoreductase NIH92_00035 PF05544 Proline racemase NIH92_00040 PF00392 Bacterial regulatory proteins, gntR family NIH92_00050 PF00701 Dihydrodipicolinate synthetase family NIH92_00060 PF00376 MerR family regulatory protein NIH92_00060 PF09278 MerR, DNA binding NIH92_00080 PF00005 ABC transporter NIH92_00085 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIH92_00090 PF01425 Amidase NIH92_00095 PF08753 NikR C terminal nickel binding domain NIH92_00095 PF01402 Ribbon-helix-helix protein, copG family NIH92_00115 PF02525 Flavodoxin-like fold NIH92_00120 PF02785 Biotin carboxylase C-terminal domain NIH92_00120 PF00289 Biotin carboxylase, N-terminal domain NIH92_00120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIH92_00135 PF00107 Zinc-binding dehydrogenase NIH92_00135 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_00135 PF13823 Alcohol dehydrogenase GroES-associated NIH92_00145 PF00440 Bacterial regulatory proteins, tetR family NIH92_00165 PF00654 Voltage gated chloride channel NIH92_00170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIH92_00170 PF02785 Biotin carboxylase C-terminal domain NIH92_00170 PF00289 Biotin carboxylase, N-terminal domain NIH92_00170 PF00364 Biotin-requiring enzyme NIH92_00180 PF07286 Protein of unknown function (DUF1445) NIH92_00185 PF03746 LamB/YcsF family NIH92_00190 PF01566 Natural resistance-associated macrophage protein NIH92_00195 PF03466 LysR substrate binding domain NIH92_00195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_00210 PF03527 RHS protein NIH92_00210 PF05593 RHS Repeat NIH92_00215 PF13296 Putative type VI secretion system Rhs element Vgr NIH92_00215 PF04717 Type VI secretion system, phage-baseplate injector NIH92_00215 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIH92_00225 PF13419 Haloacid dehalogenase-like hydrolase NIH92_00245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIH92_00245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIH92_00265 PF07690 Major Facilitator Superfamily NIH92_00280 PF03279 Bacterial lipid A biosynthesis acyltransferase NIH92_00285 PF00563 EAL domain NIH92_00285 PF00990 Diguanylate cyclase, GGDEF domain NIH92_00285 PF03707 Bacterial signalling protein N terminal repeat NIH92_00290 PF00892 EamA-like transporter family NIH92_00295 PF01037 Lrp/AsnC ligand binding domain NIH92_00300 PF00488 MutS domain V NIH92_00300 PF05190 MutS family domain IV NIH92_00300 PF05192 MutS domain III NIH92_00300 PF05188 MutS domain II NIH92_00300 PF01624 MutS domain I NIH92_00310 PF00037 4Fe-4S binding domain NIH92_00310 PF11953 Domain of unknown function (DUF3470) NIH92_00320 PF01596 O-methyltransferase NIH92_00330 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_00335 PF01205 Uncharacterized protein family UPF0029 NIH92_00345 PF03412 Peptidase C39 family NIH92_00345 PF00005 ABC transporter NIH92_00345 PF00664 ABC transporter transmembrane region NIH92_00350 PF02321 Outer membrane efflux protein NIH92_00355 PF00005 ABC transporter NIH92_00355 PF12399 Branched-chain amino acid ATP-binding cassette transporter NIH92_00360 PF03968 OstA-like protein NIH92_00375 PF00571 CBS domain NIH92_00375 PF01380 SIS domain NIH92_00380 PF09190 DALR domain NIH92_00380 PF01406 tRNA synthetases class I (C) catalytic domain NIH92_00405 PF01638 HxlR-like helix-turn-helix NIH92_00410 PF07690 Major Facilitator Superfamily NIH92_00435 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIH92_00435 PF03807 NADP oxidoreductase coenzyme F420-dependent NIH92_00445 PF00313 'Cold-shock' DNA-binding domain NIH92_00450 PF01810 LysE type translocator NIH92_00480 PF13742 OB-fold nucleic acid binding domain NIH92_00480 PF02601 Exonuclease VII, large subunit NIH92_00515 PF09278 MerR, DNA binding NIH92_00515 PF00376 MerR family regulatory protein NIH92_00520 PF00403 Heavy-metal-associated domain NIH92_00525 PF00403 Heavy-metal-associated domain NIH92_00530 PF03466 LysR substrate binding domain NIH92_00530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_00540 PF00355 Rieske [2Fe-2S] domain NIH92_00540 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIH92_00545 PF00866 Ring hydroxylating beta subunit NIH92_00550 PF00111 2Fe-2S iron-sulfur cluster binding domain NIH92_00550 PF00175 Oxidoreductase NAD-binding domain NIH92_00550 PF00970 Oxidoreductase FAD-binding domain NIH92_00555 PF00106 short chain dehydrogenase NIH92_00560 PF03594 Benzoate membrane transport protein NIH92_00565 PF07690 Major Facilitator Superfamily NIH92_00575 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NIH92_00575 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NIH92_00580 PF00271 Helicase conserved C-terminal domain NIH92_00580 PF04408 Helicase associated domain (HA2) NIH92_00580 PF11898 Domain of unknown function (DUF3418) NIH92_00580 PF00270 DEAD/DEAH box helicase NIH92_00580 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NIH92_00585 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIH92_00585 PF00578 AhpC/TSA family NIH92_00605 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_00605 PF13192 Thioredoxin domain NIH92_00615 PF00043 Glutathione S-transferase, C-terminal domain NIH92_00615 PF02798 Glutathione S-transferase, N-terminal domain NIH92_00625 PF02390 Putative methyltransferase NIH92_00630 PF00043 Glutathione S-transferase, C-terminal domain NIH92_00630 PF13417 Glutathione S-transferase, N-terminal domain NIH92_00640 PF00691 OmpA family NIH92_00640 PF13488 Glycine zipper NIH92_00645 PF01979 Amidohydrolase family NIH92_00650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIH92_00650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIH92_00660 PF01170 Putative RNA methylase family UPF0020 NIH92_00660 PF02926 THUMP domain NIH92_00660 PF10672 S-adenosylmethionine-dependent methyltransferase NIH92_00675 PF10431 C-terminal, D2-small domain, of ClpB protein NIH92_00675 PF02861 Clp amino terminal domain, pathogenicity island component NIH92_00675 PF17871 AAA lid domain NIH92_00675 PF07724 AAA domain (Cdc48 subfamily) NIH92_00675 PF00004 ATPase family associated with various cellular activities (AAA) NIH92_00690 PF02566 OsmC-like protein NIH92_00700 PF13545 Crp-like helix-turn-helix domain NIH92_00700 PF00027 Cyclic nucleotide-binding domain NIH92_00710 PF00248 Aldo/keto reductase family NIH92_00725 PF00709 Adenylosuccinate synthetase NIH92_00730 PF13393 Histidyl-tRNA synthetase NIH92_00735 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIH92_00735 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIH92_00740 PF02272 DHHA1 domain NIH92_00740 PF01411 tRNA synthetases class II (A) NIH92_00740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIH92_00745 PF13840 ACT domain NIH92_00745 PF00696 Amino acid kinase family NIH92_00745 PF01842 ACT domain NIH92_00750 PF02599 Global regulator protein family NIH92_00755 PF01351 Ribonuclease HII NIH92_00765 PF01292 Prokaryotic cytochrome b561 NIH92_00770 PF00962 Adenosine/AMP deaminase NIH92_00775 PF00860 Permease family NIH92_00785 PF00743 Flavin-binding monooxygenase-like NIH92_00790 PF00106 short chain dehydrogenase NIH92_00800 PF02678 Pirin NIH92_00800 PF17954 Quercetinase C-terminal cupin domain NIH92_00805 PF17932 Tetracyclin repressor-like, C-terminal domain NIH92_00805 PF00440 Bacterial regulatory proteins, tetR family NIH92_00815 PF00106 short chain dehydrogenase NIH92_00825 PF13610 DDE domain NIH92_00830 PF03527 RHS protein NIH92_00830 PF05593 RHS Repeat NIH92_00835 PF04717 Type VI secretion system, phage-baseplate injector NIH92_00835 PF13296 Putative type VI secretion system Rhs element Vgr NIH92_00835 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIH92_00855 PF03180 NLPA lipoprotein NIH92_00860 PF05987 Bacterial protein of unknown function (DUF898) NIH92_00875 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_00875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIH92_00880 PF00764 Arginosuccinate synthase NIH92_00885 PF01590 GAF domain NIH92_00885 PF00563 EAL domain NIH92_00885 PF00360 Phytochrome region NIH92_00885 PF00990 Diguanylate cyclase, GGDEF domain NIH92_00890 PF01979 Amidohydrolase family NIH92_00895 PF00929 Exonuclease NIH92_00905 PF00593 TonB dependent receptor NIH92_00905 PF07715 TonB-dependent Receptor Plug Domain NIH92_00910 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_00910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIH92_00915 PF00005 ABC transporter NIH92_00915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIH92_00920 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_00920 PF12911 N-terminal TM domain of oligopeptide transport permease C NIH92_00925 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_00930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NIH92_00935 PF01464 Transglycosylase SLT domain NIH92_00935 PF01476 LysM domain NIH92_00935 PF01464 Transglycosylase SLT domain NIH92_00935 PF01476 LysM domain NIH92_00940 PF00929 Exonuclease NIH92_00950 PF00293 NUDIX domain NIH92_00950 PF09297 NADH pyrophosphatase zinc ribbon domain NIH92_00960 PF04972 BON domain NIH92_00965 PF02021 Uncharacterised protein family UPF0102 NIH92_00970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIH92_00980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_00980 PF03466 LysR substrate binding domain NIH92_00985 PF01810 LysE type translocator NIH92_00995 PF13411 MerR HTH family regulatory protein NIH92_01005 PF01494 FAD binding domain NIH92_01010 PF01494 FAD binding domain NIH92_01015 PF05195 Aminopeptidase P, N-terminal domain NIH92_01015 PF00557 Metallopeptidase family M24 NIH92_01055 PF08019 Phosphoethanolamine transferase EptA/EptB NIH92_01055 PF00884 Sulfatase NIH92_01100 PF01476 LysM domain NIH92_01100 PF08525 Opacity-associated protein A N-terminal motif NIH92_01100 PF01551 Peptidase family M23 NIH92_01445 PF01812 5-formyltetrahydrofolate cyclo-ligase family NIH92_01450 PF00691 OmpA family NIH92_01450 PF04355 SmpA / OmlA family NIH92_01455 PF13018 Extended Signal Peptide of Type V secretion system NIH92_01455 PF03895 YadA-like membrane anchor domain NIH92_01455 PF05658 Head domain of trimeric autotransporter adhesin NIH92_01455 PF05662 Coiled stalk of trimeric autotransporter adhesin NIH92_01460 PF02190 ATP-dependent protease La (LON) substrate-binding domain NIH92_01460 PF00004 ATPase family associated with various cellular activities (AAA) NIH92_01460 PF05362 Lon protease (S16) C-terminal proteolytic domain NIH92_01465 PF02590 Predicted SPOUT methyltransferase NIH92_01470 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NIH92_01480 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIH92_01480 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIH92_01485 PF04060 Putative Fe-S cluster NIH92_01490 PF10576 Iron-sulfur binding domain of endonuclease III NIH92_01490 PF00633 Helix-hairpin-helix motif NIH92_01490 PF00730 HhH-GPD superfamily base excision DNA repair protein NIH92_01500 PF05191 Adenylate kinase, active site lid NIH92_01515 PF03717 Penicillin-binding Protein dimerisation domain NIH92_01515 PF00905 Penicillin binding protein transpeptidase domain NIH92_01530 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIH92_01535 PF01730 UreF NIH92_01540 PF02814 UreE urease accessory protein, N-terminal domain NIH92_01540 PF05194 UreE urease accessory protein, C-terminal domain NIH92_01545 PF01979 Amidohydrolase family NIH92_01545 PF00449 Urease alpha-subunit, N-terminal domain NIH92_01550 PF00699 Urease beta subunit NIH92_01555 PF00547 Urease, gamma subunit NIH92_01560 PF01774 UreD urease accessory protein NIH92_01575 PF00463 Isocitrate lyase family NIH92_01580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_01580 PF03466 LysR substrate binding domain NIH92_01585 PF00571 CBS domain NIH92_01585 PF03471 Transporter associated domain NIH92_01585 PF01595 Cyclin M transmembrane N-terminal domain NIH92_01590 PF03600 Citrate transporter NIH92_01605 PF00009 Elongation factor Tu GTP binding domain NIH92_01610 PF01507 Phosphoadenosine phosphosulfate reductase family NIH92_01620 PF14052 Capsule assembly protein Wzi NIH92_01625 PF00152 tRNA synthetases class II (D, K and N) NIH92_01625 PF01336 OB-fold nucleic acid binding domain NIH92_01640 PF00301 Rubredoxin NIH92_01645 PF18113 Rubredoxin binding C-terminal domain NIH92_01645 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_01650 PF00561 alpha/beta hydrolase fold NIH92_01655 PF03466 LysR substrate binding domain NIH92_01655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_01665 PF02503 Polyphosphate kinase middle domain NIH92_01665 PF17941 Polyphosphate kinase C-terminal domain 1 NIH92_01665 PF13089 Polyphosphate kinase N-terminal domain NIH92_01665 PF13090 Polyphosphate kinase C-terminal domain 2 NIH92_01670 PF00912 Transglycosylase NIH92_01675 PF01694 Rhomboid family NIH92_01685 PF00005 ABC transporter NIH92_01690 PF13472 GDSL-like Lipase/Acylhydrolase family NIH92_01695 PF00484 Carbonic anhydrase NIH92_01700 PF00561 alpha/beta hydrolase fold NIH92_01710 PF07715 TonB-dependent Receptor Plug Domain NIH92_01710 PF00593 TonB dependent receptor NIH92_01715 PF01521 Iron-sulphur cluster biosynthesis NIH92_01715 PF01106 NifU-like domain NIH92_01725 PF00884 Sulfatase NIH92_01730 PF03781 Sulfatase-modifying factor enzyme 1 NIH92_01745 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_01750 PF01384 Phosphate transporter family NIH92_01755 PF02965 Vitamin B12 dependent methionine synthase, activation domain NIH92_01755 PF00809 Pterin binding enzyme NIH92_01755 PF02574 Homocysteine S-methyltransferase NIH92_01755 PF02607 B12 binding domain NIH92_01755 PF02310 B12 binding domain NIH92_01760 PF02779 Transketolase, pyrimidine binding domain NIH92_01760 PF02780 Transketolase, C-terminal domain NIH92_01765 PF00456 Transketolase, thiamine diphosphate binding domain NIH92_01770 PF07690 Major Facilitator Superfamily NIH92_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_01780 PF03466 LysR substrate binding domain NIH92_01790 PF01263 Aldose 1-epimerase NIH92_01795 PF07690 Major Facilitator Superfamily NIH92_01800 PF12833 Helix-turn-helix domain NIH92_01800 PF02311 AraC-like ligand binding domain NIH92_01805 PF04960 Glutaminase NIH92_01810 PF01327 Polypeptide deformylase NIH92_01815 PF07690 Major Facilitator Superfamily NIH92_01825 PF00205 Thiamine pyrophosphate enzyme, central domain NIH92_01825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIH92_01825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIH92_01830 PF00171 Aldehyde dehydrogenase family NIH92_01835 PF01958 Domain of unknown function DUF108 NIH92_01835 PF03447 Homoserine dehydrogenase, NAD binding domain NIH92_01845 PF12697 Alpha/beta hydrolase family NIH92_01855 PF07690 Major Facilitator Superfamily NIH92_01860 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_01860 PF14759 Reductase C-terminal NIH92_01865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIH92_01875 PF00355 Rieske [2Fe-2S] domain NIH92_01885 PF00355 Rieske [2Fe-2S] domain NIH92_01890 PF01614 Bacterial transcriptional regulator NIH92_01890 PF09339 IclR helix-turn-helix domain NIH92_01905 PF00378 Enoyl-CoA hydratase/isomerase NIH92_01915 PF00535 Glycosyl transferase family 2 NIH92_01920 PF01522 Polysaccharide deacetylase NIH92_01920 PF14883 Hypothetical glycosyl hydrolase family 13 NIH92_01925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIH92_01930 PF07152 YaeQ protein NIH92_01935 PF00375 Sodium:dicarboxylate symporter family NIH92_01940 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIH92_01940 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIH92_01950 PF03061 Thioesterase superfamily NIH92_01960 PF02028 BCCT, betaine/carnitine/choline family transporter NIH92_01965 PF02028 BCCT, betaine/carnitine/choline family transporter NIH92_01970 PF00440 Bacterial regulatory proteins, tetR family NIH92_01970 PF13977 BetI-type transcriptional repressor, C-terminal NIH92_01975 PF00171 Aldehyde dehydrogenase family NIH92_01980 PF05199 GMC oxidoreductase NIH92_01980 PF00732 GMC oxidoreductase NIH92_01985 PF06039 Malate:quinone oxidoreductase (Mqo) NIH92_01995 PF02574 Homocysteine S-methyltransferase NIH92_02000 PF13520 Amino acid permease NIH92_02025 PF01126 Heme oxygenase NIH92_02035 PF04575 Protein of unknown function (DUF560) NIH92_02045 PF07715 TonB-dependent Receptor Plug Domain NIH92_02045 PF00593 TonB dependent receptor NIH92_02055 PF04542 Sigma-70 region 2 NIH92_02055 PF08281 Sigma-70, region 4 NIH92_02065 PF00701 Dihydrodipicolinate synthetase family NIH92_02070 PF00083 Sugar (and other) transporter NIH92_02180 PF13737 Transposase DDE domain NIH92_02210 PF00712 DNA polymerase III beta subunit, N-terminal domain NIH92_02210 PF02767 DNA polymerase III beta subunit, central domain NIH92_02210 PF02768 DNA polymerase III beta subunit, C-terminal domain NIH92_02250 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NIH92_02450 PF01695 IstB-like ATP binding protein NIH92_02460 PF01555 DNA methylase NIH92_02490 PF01555 DNA methylase NIH92_02495 PF00145 C-5 cytosine-specific DNA methylase NIH92_02565 PF00929 Exonuclease NIH92_02595 PF13737 Transposase DDE domain NIH92_02615 PF07690 Major Facilitator Superfamily NIH92_02620 PF13533 Biotin-lipoyl like NIH92_02625 PF03061 Thioesterase superfamily NIH92_02630 PF00490 Delta-aminolevulinic acid dehydratase NIH92_02635 PF01266 FAD dependent oxidoreductase NIH92_02640 PF01370 NAD dependent epimerase/dehydratase family NIH92_02640 PF08338 Domain of unknown function (DUF1731) NIH92_02660 PF12320 Type 5 capsule protein repressor C-terminal domain NIH92_02660 PF00149 Calcineurin-like phosphoesterase NIH92_02670 PF01168 Alanine racemase, N-terminal domain NIH92_02675 PF00437 Type II/IV secretion system protein NIH92_02680 PF00437 Type II/IV secretion system protein NIH92_02685 PF01475 Ferric uptake regulator family NIH92_02690 PF04355 SmpA / OmlA family NIH92_02695 PF03658 RnfH family Ubiquitin NIH92_02705 PF01814 Hemerythrin HHE cation binding domain NIH92_02710 PF13230 Glutamine amidotransferases class-II NIH92_02720 PF00696 Amino acid kinase family NIH92_02725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIH92_02725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIH92_02725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIH92_02725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIH92_02730 PF00692 dUTPase NIH92_02735 PF00580 UvrD/REP helicase N-terminal domain NIH92_02735 PF13361 UvrD-like helicase C-terminal domain NIH92_02740 PF00691 OmpA family NIH92_02740 PF13488 Glycine zipper NIH92_02745 PF01553 Acyltransferase NIH92_02755 PF03775 Septum formation inhibitor MinC, C-terminal domain NIH92_02760 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NIH92_02765 PF03776 Septum formation topological specificity factor MinE NIH92_02780 PF01810 LysE type translocator NIH92_02785 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NIH92_02785 PF17854 FtsK alpha domain NIH92_02785 PF09397 Ftsk gamma domain NIH92_02785 PF01580 FtsK/SpoIIIE family NIH92_02790 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_02795 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NIH92_02800 PF04377 Arginine-tRNA-protein transferase, C terminus NIH92_02800 PF04376 Arginine-tRNA-protein transferase, N terminus NIH92_02805 PF00583 Acetyltransferase (GNAT) family NIH92_02820 PF00009 Elongation factor Tu GTP binding domain NIH92_02820 PF03144 Elongation factor Tu domain 2 NIH92_02820 PF03143 Elongation factor Tu C-terminal domain NIH92_02825 PF03764 Elongation factor G, domain IV NIH92_02825 PF00009 Elongation factor Tu GTP binding domain NIH92_02825 PF03144 Elongation factor Tu domain 2 NIH92_02825 PF14492 Elongation Factor G, domain II NIH92_02825 PF00679 Elongation factor G C-terminus NIH92_02830 PF00177 Ribosomal protein S7p/S5e NIH92_02835 PF00164 Ribosomal protein S12/S23 NIH92_02845 PF02801 Beta-ketoacyl synthase, C-terminal domain NIH92_02845 PF00109 Beta-ketoacyl synthase, N-terminal domain NIH92_02850 PF03653 Uncharacterised protein family (UPF0093) NIH92_02855 PF02678 Pirin NIH92_02855 PF05726 Pirin C-terminal cupin domain NIH92_02865 PF00795 Carbon-nitrogen hydrolase NIH92_02865 PF02540 NAD synthase NIH92_02885 PF00171 Aldehyde dehydrogenase family NIH92_02890 PF00355 Rieske [2Fe-2S] domain NIH92_02890 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIH92_02895 PF07859 alpha/beta hydrolase fold NIH92_02900 PF02028 BCCT, betaine/carnitine/choline family transporter NIH92_02905 PF00180 Isocitrate/isopropylmalate dehydrogenase NIH92_02910 PF03466 LysR substrate binding domain NIH92_02910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_02930 PF00037 4Fe-4S binding domain NIH92_02935 PF01467 Cytidylyltransferase-like NIH92_02940 PF01668 SmpB protein NIH92_02945 PF03358 NADPH-dependent FMN reductase NIH92_02950 PF02578 Multi-copper polyphenol oxidoreductase laccase NIH92_02955 PF00849 RNA pseudouridylate synthase NIH92_02955 PF01479 S4 domain NIH92_02960 PF13525 Outer membrane lipoprotein NIH92_02965 PF01807 CHC2 zinc finger NIH92_02965 PF08275 DNA primase catalytic core, N-terminal domain NIH92_02965 PF08278 DNA primase DnaG DnaB-binding NIH92_02965 PF10410 DnaB-helicase binding domain of primase NIH92_02970 PF01488 Shikimate / quinate 5-dehydrogenase NIH92_02970 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NIH92_02970 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NIH92_02980 PF03550 Outer membrane lipoprotein LolB NIH92_02985 PF00288 GHMP kinases N terminal domain NIH92_02985 PF08544 GHMP kinases C terminal NIH92_03010 PF14572 Phosphoribosyl synthetase-associated domain NIH92_03010 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIH92_03015 PF01386 Ribosomal L25p family NIH92_03020 PF01195 Peptidyl-tRNA hydrolase NIH92_03025 PF02261 Aspartate decarboxylase NIH92_03040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIH92_03050 PF08543 Phosphomethylpyrimidine kinase NIH92_03050 PF03070 TENA/THI-4/PQQC family NIH92_03050 PF02581 Thiamine monophosphate synthase NIH92_03055 PF04972 BON domain NIH92_03055 PF01476 LysM domain NIH92_03060 PF00550 Phosphopantetheine attachment site NIH92_03070 PF00698 Acyl transferase domain NIH92_03075 PF01783 Ribosomal L32p protein family NIH92_03080 PF02620 Large ribosomal RNA subunit accumulation protein YceD NIH92_03085 PF04315 Elongation factor P hydroxylase NIH92_03090 PF01300 Telomere recombination NIH92_03095 PF02616 Segregation and condensation protein ScpA NIH92_03100 PF04079 Segregation and condensation complex subunit ScpB NIH92_03105 PF00849 RNA pseudouridylate synthase NIH92_03105 PF01479 S4 domain NIH92_03120 PF00155 Aminotransferase class I and II NIH92_03125 PF00202 Aminotransferase class-III NIH92_03125 PF06968 Biotin and Thiamin Synthesis associated domain NIH92_03125 PF04055 Radical SAM superfamily NIH92_03130 PF08241 Methyltransferase domain NIH92_03130 PF12697 Alpha/beta hydrolase family NIH92_03135 PF02358 Trehalose-phosphatase NIH92_03140 PF00982 Glycosyltransferase family 20 NIH92_03145 PF07690 Major Facilitator Superfamily NIH92_03150 PF00210 Ferritin-like domain NIH92_03155 PF00533 BRCA1 C Terminus (BRCT) domain NIH92_03155 PF01653 NAD-dependent DNA ligase adenylation domain NIH92_03155 PF03120 NAD-dependent DNA ligase OB-fold domain NIH92_03155 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NIH92_03155 PF12826 Helix-hairpin-helix motif NIH92_03165 PF06470 SMC proteins Flexible Hinge Domain NIH92_03165 PF02463 RecF/RecN/SMC N terminal domain NIH92_03175 PF01925 Sulfite exporter TauE/SafE NIH92_03185 PF03309 Type III pantothenate kinase NIH92_03190 PF00448 SRP54-type protein, GTPase domain NIH92_03190 PF02881 SRP54-type protein, helical bundle domain NIH92_03190 PF02978 Signal peptide binding domain NIH92_03200 PF01207 Dihydrouridine synthase (Dus) NIH92_03230 PF00692 dUTPase NIH92_03245 PF01048 Phosphorylase superfamily NIH92_03250 PF10609 NUBPL iron-transfer P-loop NTPase NIH92_03260 PF09334 tRNA synthetases class I (M) NIH92_03260 PF01588 Putative tRNA binding domain NIH92_03285 PF13533 Biotin-lipoyl like NIH92_03290 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_03305 PF05552 Conserved TM helix NIH92_03320 PF00970 Oxidoreductase FAD-binding domain NIH92_03320 PF00175 Oxidoreductase NAD-binding domain NIH92_03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_03325 PF03466 LysR substrate binding domain NIH92_03330 PF00313 'Cold-shock' DNA-binding domain NIH92_03340 PF00361 Proton-conducting membrane transporter NIH92_03345 PF00361 Proton-conducting membrane transporter NIH92_03350 PF00361 Proton-conducting membrane transporter NIH92_03350 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIH92_03355 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIH92_03360 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NIH92_03365 PF12838 4Fe-4S dicluster domain NIH92_03370 PF00146 NADH dehydrogenase NIH92_03375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIH92_03375 PF00384 Molybdopterin oxidoreductase NIH92_03375 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NIH92_03380 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NIH92_03380 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NIH92_03380 PF10531 SLBB domain NIH92_03390 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NIH92_03390 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NIH92_03395 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NIH92_03400 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NIH92_03405 PF17151 Periplasmic sensor domain NIH92_03405 PF00990 Diguanylate cyclase, GGDEF domain NIH92_03415 PF00512 His Kinase A (phospho-acceptor) domain NIH92_03415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_03415 PF00672 HAMP domain NIH92_03420 PF00486 Transcriptional regulatory protein, C terminal NIH92_03420 PF00072 Response regulator receiver domain NIH92_03430 PF03477 ATP cone domain NIH92_03430 PF02867 Ribonucleotide reductase, barrel domain NIH92_03430 PF00317 Ribonucleotide reductase, all-alpha domain NIH92_03440 PF00268 Ribonucleotide reductase, small chain NIH92_03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_03450 PF13756 Stimulus-sensing domain NIH92_03450 PF13755 Sensor N-terminal transmembrane domain NIH92_03450 PF00512 His Kinase A (phospho-acceptor) domain NIH92_03450 PF00672 HAMP domain NIH92_03520 PF13360 PQQ-like domain NIH92_03520 PF01011 PQQ enzyme repeat NIH92_03545 PF02567 Phenazine biosynthesis-like protein NIH92_03585 PF10544 T5orf172 domain NIH92_03590 PF13614 AAA domain NIH92_03610 PF00905 Penicillin binding protein transpeptidase domain NIH92_03620 PF01613 Flavin reductase like domain NIH92_03625 PF08267 Cobalamin-independent synthase, N-terminal domain NIH92_03625 PF01717 Cobalamin-independent synthase, Catalytic domain NIH92_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_03635 PF03466 LysR substrate binding domain NIH92_03640 PF01810 LysE type translocator NIH92_03650 PF12833 Helix-turn-helix domain NIH92_03650 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIH92_03655 PF07687 Peptidase dimerisation domain NIH92_03655 PF01546 Peptidase family M20/M25/M40 NIH92_03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_03665 PF03466 LysR substrate binding domain NIH92_03670 PF07690 Major Facilitator Superfamily NIH92_03680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_03680 PF03466 LysR substrate binding domain NIH92_03685 PF00890 FAD binding domain NIH92_03685 PF14537 Cytochrome c3 NIH92_03695 PF02515 CoA-transferase family III NIH92_03700 PF07690 Major Facilitator Superfamily NIH92_03705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_03705 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_03705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_03710 PF03466 LysR substrate binding domain NIH92_03710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_03715 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_03715 PF00107 Zinc-binding dehydrogenase NIH92_03720 PF00962 Adenosine/AMP deaminase NIH92_03745 PF02445 Quinolinate synthetase A protein NIH92_03750 PF01960 ArgJ family NIH92_03755 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIH92_03755 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIH92_03760 PF00893 Small Multidrug Resistance protein NIH92_03770 PF05275 Copper resistance protein B precursor (CopB) NIH92_03775 PF07732 Multicopper oxidase NIH92_03775 PF07731 Multicopper oxidase NIH92_03775 PF00394 Multicopper oxidase NIH92_03790 PF00834 Ribulose-phosphate 3 epimerase family NIH92_03800 PF00756 Putative esterase NIH92_03810 PF04445 Putative SAM-dependent methyltransferase NIH92_03815 PF00814 Glycoprotease family NIH92_03820 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_03825 PF00293 NUDIX domain NIH92_03865 PF00425 chorismate binding enzyme NIH92_03865 PF04715 Anthranilate synthase component I, N terminal region NIH92_03870 PF00155 Aminotransferase class I and II NIH92_03875 PF00815 Histidinol dehydrogenase NIH92_03880 PF01634 ATP phosphoribosyltransferase NIH92_03885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIH92_03890 PF01722 BolA-like protein NIH92_03895 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NIH92_03900 PF04552 Sigma-54, DNA binding domain NIH92_03900 PF04963 Sigma-54 factor, core binding domain NIH92_03900 PF00309 Sigma-54 factor, Activator interacting domain (AID) NIH92_03945 PF00795 Carbon-nitrogen hydrolase NIH92_03955 PF01047 MarR family NIH92_03960 PF02566 OsmC-like protein NIH92_03965 PF00437 Type II/IV secretion system protein NIH92_03985 PF01612 3'-5' exonuclease NIH92_03985 PF01367 5'-3' exonuclease, C-terminal SAM fold NIH92_03985 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NIH92_03985 PF00476 DNA polymerase family A NIH92_03990 PF02325 YGGT family NIH92_03995 PF03807 NADP oxidoreductase coenzyme F420-dependent NIH92_03995 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIH92_04000 PF01171 PP-loop family NIH92_04000 PF09179 TilS substrate binding domain NIH92_04000 PF11734 TilS substrate C-terminal domain NIH92_04005 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NIH92_04010 PF02541 Ppx/GppA phosphatase family NIH92_04015 PF00085 Thioredoxin NIH92_04020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIH92_04020 PF07497 Rho termination factor, RNA-binding domain NIH92_04020 PF07498 Rho termination factor, N-terminal domain NIH92_04035 PF00216 Bacterial DNA-binding protein NIH92_04040 PF01588 Putative tRNA binding domain NIH92_04040 PF03147 Ferredoxin-fold anticodon binding domain NIH92_04040 PF03484 tRNA synthetase B5 domain NIH92_04040 PF03483 B3/4 domain NIH92_04040 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NIH92_04045 PF01409 tRNA synthetases class II core domain (F) NIH92_04045 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NIH92_04065 PF00453 Ribosomal protein L20 NIH92_04070 PF01632 Ribosomal protein L35 NIH92_04080 PF07690 Major Facilitator Superfamily NIH92_04085 PF09335 SNARE associated Golgi protein NIH92_04090 PF00043 Glutathione S-transferase, C-terminal domain NIH92_04090 PF02798 Glutathione S-transferase, N-terminal domain NIH92_04095 PF05198 Translation initiation factor IF-3, N-terminal domain NIH92_04095 PF00707 Translation initiation factor IF-3, C-terminal domain NIH92_04100 PF02824 TGS domain NIH92_04100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIH92_04100 PF03129 Anticodon binding domain NIH92_04100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIH92_04105 PF00501 AMP-binding enzyme NIH92_04105 PF13193 AMP-binding enzyme C-terminal domain NIH92_04110 PF04751 Protein of unknown function (DUF615) NIH92_04115 PF00381 PTS HPr component phosphorylation site NIH92_04120 PF03668 P-loop ATPase protein family NIH92_04125 PF02569 Pantoate-beta-alanine ligase NIH92_04130 PF02548 Ketopantoate hydroxymethyltransferase NIH92_04135 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NIH92_04140 PF01743 Poly A polymerase head domain NIH92_04140 PF12626 Polymerase A arginine-rich C-terminus NIH92_04140 PF12627 Probable RNA and SrmB- binding site of polymerase A NIH92_04150 PF03819 MazG nucleotide pyrophosphohydrolase domain NIH92_04160 PF13291 ACT domain NIH92_04160 PF02824 TGS domain NIH92_04160 PF04607 Region found in RelA / SpoT proteins NIH92_04165 PF05958 tRNA (Uracil-5-)-methyltransferase NIH92_04175 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_04180 PF00672 HAMP domain NIH92_04180 PF01627 Hpt domain NIH92_04180 PF00072 Response regulator receiver domain NIH92_04180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIH92_04180 PF00512 His Kinase A (phospho-acceptor) domain NIH92_04180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_04185 PF00378 Enoyl-CoA hydratase/isomerase NIH92_04190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIH92_04190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIH92_04195 PF01261 Xylose isomerase-like TIM barrel NIH92_04205 PF00106 short chain dehydrogenase NIH92_04210 PF02233 NAD(P) transhydrogenase beta subunit NIH92_04215 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NIH92_04220 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NIH92_04220 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NIH92_04225 PF00892 EamA-like transporter family NIH92_04235 PF07690 Major Facilitator Superfamily NIH92_04240 PF01207 Dihydrouridine synthase (Dus) NIH92_04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_04250 PF03466 LysR substrate binding domain NIH92_04260 PF00899 ThiF family NIH92_04270 PF00694 Aconitase C-terminal domain NIH92_04270 PF00330 Aconitase family (aconitate hydratase) NIH92_04275 PF01026 TatD related DNase NIH92_04290 PF03144 Elongation factor Tu domain 2 NIH92_04290 PF16658 Class II release factor RF3, C-terminal domain NIH92_04290 PF00009 Elongation factor Tu GTP binding domain NIH92_04310 PF03707 Bacterial signalling protein N terminal repeat NIH92_04310 PF00990 Diguanylate cyclase, GGDEF domain NIH92_04310 PF00563 EAL domain NIH92_04315 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NIH92_04315 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NIH92_04320 PF10369 Small subunit of acetolactate synthase NIH92_04325 PF00205 Thiamine pyrophosphate enzyme, central domain NIH92_04325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIH92_04325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIH92_04335 PF09334 tRNA synthetases class I (M) NIH92_04335 PF00133 tRNA synthetases class I (I, L, M and V) NIH92_04335 PF13603 Leucyl-tRNA synthetase, Domain 2 NIH92_04335 PF08264 Anticodon-binding domain of tRNA NIH92_04350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIH92_04355 PF00005 ABC transporter NIH92_04355 PF02687 FtsX-like permease family NIH92_04355 PF12704 MacB-like periplasmic core domain NIH92_04360 PF02321 Outer membrane efflux protein NIH92_04375 PF00929 Exonuclease NIH92_04380 PF03193 RsgA GTPase NIH92_04390 PF00462 Glutaredoxin NIH92_04395 PF02556 Preprotein translocase subunit SecB NIH92_04410 PF00109 Beta-ketoacyl synthase, N-terminal domain NIH92_04410 PF02801 Beta-ketoacyl synthase, C-terminal domain NIH92_04425 PF00109 Beta-ketoacyl synthase, N-terminal domain NIH92_04425 PF02801 Beta-ketoacyl synthase, C-terminal domain NIH92_04435 PF04820 Tryptophan halogenase NIH92_04455 PF00221 Aromatic amino acid lyase NIH92_04470 PF00501 AMP-binding enzyme NIH92_04470 PF13193 AMP-binding enzyme C-terminal domain NIH92_04480 PF00550 Phosphopantetheine attachment site NIH92_04485 PF00550 Phosphopantetheine attachment site NIH92_04500 PF01926 50S ribosome-binding GTPase NIH92_04500 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NIH92_04505 PF13360 PQQ-like domain NIH92_04515 PF03129 Anticodon binding domain NIH92_04515 PF13393 Histidyl-tRNA synthetase NIH92_04520 PF04551 GcpE protein NIH92_04525 PF13464 Domain of unknown function (DUF4115) NIH92_04535 PF04055 Radical SAM superfamily NIH92_04540 PF00334 Nucleoside diphosphate kinase NIH92_04545 PF04384 Iron-sulphur cluster assembly NIH92_04550 PF01569 PAP2 superfamily NIH92_04555 PF00534 Glycosyl transferases group 1 NIH92_04555 PF13439 Glycosyltransferase Family 4 NIH92_04560 PF00595 PDZ domain NIH92_04560 PF11818 C-terminal domain of tail specific protease (DUF3340) NIH92_04560 PF03572 Peptidase family S41 NIH92_04560 PF17804 Tail specific protease N-terminal domain NIH92_04565 PF00933 Glycosyl hydrolase family 3 N terminal domain NIH92_04575 PF00561 alpha/beta hydrolase fold NIH92_04580 PF00171 Aldehyde dehydrogenase family NIH92_04585 PF00171 Aldehyde dehydrogenase family NIH92_04590 PF01202 Shikimate kinase NIH92_04595 PF02447 GntP family permease NIH92_04600 PF01081 KDPG and KHG aldolase NIH92_04605 PF00920 Dehydratase family NIH92_04610 PF00871 Acetokinase family NIH92_04615 PF01515 Phosphate acetyl/butaryl transferase NIH92_04615 PF07085 DRTGG domain NIH92_04620 PF05681 Fumarate hydratase (Fumerase) NIH92_04620 PF05683 Fumarase C-terminus NIH92_04635 PF06689 ClpX C4-type zinc finger NIH92_04635 PF10431 C-terminal, D2-small domain, of ClpB protein NIH92_04635 PF07724 AAA domain (Cdc48 subfamily) NIH92_04640 PF00574 Clp protease NIH92_04645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIH92_04645 PF05698 Bacterial trigger factor protein (TF) C-terminus NIH92_04645 PF05697 Bacterial trigger factor protein (TF) NIH92_04650 PF00593 TonB dependent receptor NIH92_04650 PF07715 TonB-dependent Receptor Plug Domain NIH92_04655 PF18331 PKHD-type hydroxylase C-terminal domain NIH92_04655 PF13640 2OG-Fe(II) oxygenase superfamily NIH92_04660 PF08502 LeuA allosteric (dimerisation) domain NIH92_04660 PF00682 HMGL-like NIH92_04665 PF00561 alpha/beta hydrolase fold NIH92_04670 PF00561 alpha/beta hydrolase fold NIH92_04670 PF07021 Methionine biosynthesis protein MetW NIH92_04680 PF01725 Ham1 family NIH92_04690 PF02416 mttA/Hcf106 family NIH92_04695 PF02416 mttA/Hcf106 family NIH92_04700 PF00902 Sec-independent protein translocase protein (TatC) NIH92_04720 PF01790 Prolipoprotein diacylglyceryl transferase NIH92_04735 PF00303 Thymidylate synthase NIH92_04740 PF00186 Dihydrofolate reductase NIH92_04750 PF01625 Peptide methionine sulfoxide reductase NIH92_04760 PF01618 MotA/TolQ/ExbB proton channel family NIH92_04770 PF01842 ACT domain NIH92_04770 PF00551 Formyl transferase NIH92_04780 PF00171 Aldehyde dehydrogenase family NIH92_04785 PF00830 Ribosomal L28 family NIH92_04790 PF00471 Ribosomal protein L33 NIH92_04795 PF00999 Sodium/hydrogen exchanger family NIH92_04795 PF02254 TrkA-N domain NIH92_04815 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NIH92_04820 PF00580 UvrD/REP helicase N-terminal domain NIH92_04820 PF13361 UvrD-like helicase C-terminal domain NIH92_04835 PF08272 Topoisomerase I zinc-ribbon-like NIH92_04835 PF01131 DNA topoisomerase NIH92_04835 PF01751 Toprim domain NIH92_04835 PF01396 Topoisomerase DNA binding C4 zinc finger NIH92_04845 PF01638 HxlR-like helix-turn-helix NIH92_04850 PF00107 Zinc-binding dehydrogenase NIH92_04850 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_04855 PF04102 SlyX NIH92_04860 PF00005 ABC transporter NIH92_04860 PF16326 ABC transporter C-terminal domain NIH92_04860 PF12848 ABC transporter NIH92_04865 PF01810 LysE type translocator NIH92_04870 PF03279 Bacterial lipid A biosynthesis acyltransferase NIH92_04880 PF00375 Sodium:dicarboxylate symporter family NIH92_04890 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIH92_04890 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIH92_04910 PF01416 tRNA pseudouridine synthase NIH92_04920 PF01176 Translation initiation factor 1A / IF-1 NIH92_04935 PF00180 Isocitrate/isopropylmalate dehydrogenase NIH92_04945 PF00694 Aconitase C-terminal domain NIH92_04950 PF00330 Aconitase family (aconitate hydratase) NIH92_04960 PF03466 LysR substrate binding domain NIH92_04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_04980 PF00293 NUDIX domain NIH92_04985 PF02896 PEP-utilising enzyme, TIM barrel domain NIH92_04985 PF00391 PEP-utilising enzyme, mobile domain NIH92_04985 PF05524 PEP-utilising enzyme, N-terminal NIH92_04985 PF01590 GAF domain NIH92_04990 PF00141 Peroxidase NIH92_04995 PF12706 Beta-lactamase superfamily domain NIH92_05000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_05000 PF03466 LysR substrate binding domain NIH92_05010 PF02798 Glutathione S-transferase, N-terminal domain NIH92_05015 PF13280 WYL domain NIH92_05015 PF08279 HTH domain NIH92_05020 PF13419 Haloacid dehalogenase-like hydrolase NIH92_05025 PF00849 RNA pseudouridylate synthase NIH92_05025 PF01479 S4 domain NIH92_05030 PF12111 Polyribonucleotide phosphorylase C terminal NIH92_05030 PF10150 Ribonuclease E/G family NIH92_05030 PF00575 S1 RNA binding domain NIH92_05035 PF00501 AMP-binding enzyme NIH92_05035 PF13193 AMP-binding enzyme C-terminal domain NIH92_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_05050 PF03466 LysR substrate binding domain NIH92_05055 PF00106 short chain dehydrogenase NIH92_05060 PF04055 Radical SAM superfamily NIH92_05060 PF06969 HemN C-terminal domain NIH92_05070 PF01554 MatE NIH92_05075 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIH92_05075 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_05075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_05080 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIH92_05080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_05085 PF03109 ABC1 family NIH92_05090 PF01197 Ribosomal protein L31 NIH92_05105 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NIH92_05125 PF03884 DNA gyrase inhibitor YacG NIH92_05130 PF00753 Metallo-beta-lactamase superfamily NIH92_05135 PF00762 Ferrochelatase NIH92_05145 PF01177 Asp/Glu/Hydantoin racemase NIH92_05160 PF01206 Sulfurtransferase TusA NIH92_05165 PF00571 CBS domain NIH92_05165 PF03471 Transporter associated domain NIH92_05170 PF00795 Carbon-nitrogen hydrolase NIH92_05175 PF01588 Putative tRNA binding domain NIH92_05185 PF07963 Prokaryotic N-terminal methylation motif NIH92_05185 PF08334 Type II secretion system (T2SS), protein G NIH92_05190 PF00482 Type II secretion system (T2SS), protein F NIH92_05195 PF00270 DEAD/DEAH box helicase NIH92_05195 PF00271 Helicase conserved C-terminal domain NIH92_05195 PF17764 3′ DNA-binding domain (3′BD) NIH92_05195 PF18074 Primosomal protein N C-terminal domain NIH92_05195 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NIH92_05200 PF00999 Sodium/hydrogen exchanger family NIH92_05200 PF02254 TrkA-N domain NIH92_05205 PF01430 Hsp33 protein NIH92_05215 PF01556 DnaJ C terminal domain NIH92_05215 PF00226 DnaJ domain NIH92_05225 PF01544 CorA-like Mg2+ transporter protein NIH92_05230 PF00013 KH domain NIH92_05230 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NIH92_05230 PF01138 3' exoribonuclease family, domain 1 NIH92_05230 PF00575 S1 RNA binding domain NIH92_05230 PF03725 3' exoribonuclease family, domain 2 NIH92_05235 PF00312 Ribosomal protein S15 NIH92_05240 PF00144 Beta-lactamase NIH92_05245 PF13538 UvrD-like helicase C-terminal domain NIH92_05250 PF13361 UvrD-like helicase C-terminal domain NIH92_05250 PF12705 PD-(D/E)XK nuclease superfamily NIH92_05250 PF00580 UvrD/REP helicase N-terminal domain NIH92_05255 PF17946 RecC C-terminal domain NIH92_05265 PF03976 Polyphosphate kinase 2 (PPK2) NIH92_05275 PF01209 ubiE/COQ5 methyltransferase family NIH92_05285 PF03109 ABC1 family NIH92_05290 PF01494 FAD binding domain NIH92_05295 PF01502 Phosphoribosyl-AMP cyclohydrolase NIH92_05310 PF00361 Proton-conducting membrane transporter NIH92_05310 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NIH92_05310 PF13244 Domain of unknown function (DUF4040) NIH92_05310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIH92_05315 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIH92_05320 PF00361 Proton-conducting membrane transporter NIH92_05325 PF01899 Na+/H+ ion antiporter subunit NIH92_05330 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NIH92_05335 PF03334 Na+/H+ antiporter subunit NIH92_05340 PF02033 Ribosome-binding factor A NIH92_05345 PF00009 Elongation factor Tu GTP binding domain NIH92_05345 PF11987 Translation-initiation factor 2 NIH92_05345 PF08364 Bacterial translation initiation factor IF-2 associated region NIH92_05345 PF04760 Translation initiation factor IF-2, N-terminal region NIH92_05350 PF08529 NusA N-terminal domain NIH92_05350 PF00575 S1 RNA binding domain NIH92_05350 PF13184 NusA-like KH domain NIH92_05355 PF17384 RimP C-terminal SH3 domain NIH92_05355 PF02576 RimP N-terminal domain NIH92_05375 PF03840 Preprotein translocase SecG subunit NIH92_05380 PF00121 Triosephosphate isomerase NIH92_05385 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIH92_05385 PF00437 Type II/IV secretion system protein NIH92_05390 PF00482 Type II secretion system (T2SS), protein F NIH92_05400 PF01478 Type IV leader peptidase family NIH92_05400 PF06750 Bacterial Peptidase A24 N-terminal domain NIH92_05405 PF01121 Dephospho-CoA kinase NIH92_05415 PF00588 SpoU rRNA Methylase family NIH92_05415 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIH92_05420 PF06865 Pyrimidine/purine nucleoside phosphorylase NIH92_05430 PF02463 RecF/RecN/SMC N terminal domain NIH92_05435 PF02622 Uncharacterized ACR, COG1678 NIH92_05440 PF03652 Holliday junction resolvase NIH92_05445 PF13533 Biotin-lipoyl like NIH92_05470 PF02805 Metal binding domain of Ada NIH92_05470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIH92_05470 PF12833 Helix-turn-helix domain NIH92_05470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIH92_05475 PF01066 CDP-alcohol phosphatidyltransferase NIH92_05485 PF01541 GIY-YIG catalytic domain NIH92_05485 PF02151 UvrB/uvrC motif NIH92_05485 PF08459 UvrC Helix-hairpin-helix N-terminal NIH92_05505 PF00378 Enoyl-CoA hydratase/isomerase NIH92_05505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIH92_05505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIH92_05510 PF02803 Thiolase, C-terminal domain NIH92_05510 PF00108 Thiolase, N-terminal domain NIH92_05530 PF00376 MerR family regulatory protein NIH92_05530 PF09278 MerR, DNA binding NIH92_05540 PF01323 DSBA-like thioredoxin domain NIH92_05555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_05555 PF00183 Hsp90 protein NIH92_05570 PF13726 Na+-H+ antiporter family NIH92_05570 PF03553 Na+/H+ antiporter family NIH92_05575 PF00561 alpha/beta hydrolase fold NIH92_05595 PF04998 RNA polymerase Rpb1, domain 5 NIH92_05595 PF04997 RNA polymerase Rpb1, domain 1 NIH92_05595 PF00623 RNA polymerase Rpb1, domain 2 NIH92_05595 PF04983 RNA polymerase Rpb1, domain 3 NIH92_05595 PF05000 RNA polymerase Rpb1, domain 4 NIH92_05600 PF00562 RNA polymerase Rpb2, domain 6 NIH92_05600 PF04560 RNA polymerase Rpb2, domain 7 NIH92_05600 PF04561 RNA polymerase Rpb2, domain 2 NIH92_05600 PF04563 RNA polymerase beta subunit NIH92_05600 PF04565 RNA polymerase Rpb2, domain 3 NIH92_05600 PF10385 RNA polymerase beta subunit external 1 domain NIH92_05605 PF00542 Ribosomal protein L7/L12 C-terminal domain NIH92_05605 PF16320 Ribosomal protein L7/L12 dimerisation domain NIH92_05610 PF00466 Ribosomal protein L10 NIH92_05615 PF00687 Ribosomal protein L1p/L10e family NIH92_05620 PF00298 Ribosomal protein L11, RNA binding domain NIH92_05620 PF03946 Ribosomal protein L11, N-terminal domain NIH92_05625 PF00467 KOW motif NIH92_05625 PF02357 Transcription termination factor nusG NIH92_05630 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NIH92_05640 PF00009 Elongation factor Tu GTP binding domain NIH92_05640 PF03143 Elongation factor Tu C-terminal domain NIH92_05640 PF03144 Elongation factor Tu domain 2 NIH92_05665 PF04715 Anthranilate synthase component I, N terminal region NIH92_05665 PF00425 chorismate binding enzyme NIH92_05670 PF13419 Haloacid dehalogenase-like hydrolase NIH92_05675 PF00498 FHA domain NIH92_05675 PF12401 Protein of unknown function (DUF2662) NIH92_05680 PF00263 Bacterial type II and III secretion system protein NIH92_05680 PF03958 Bacterial type II/III secretion system short domain NIH92_05695 PF00816 H-NS histone family NIH92_05720 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NIH92_05720 PF03900 Porphobilinogen deaminase, C-terminal domain NIH92_05725 PF04397 LytTr DNA-binding domain NIH92_05725 PF00072 Response regulator receiver domain NIH92_05730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_05730 PF06580 Histidine kinase NIH92_05730 PF07694 5TMR of 5TMR-LYT NIH92_05735 PF14698 Argininosuccinate lyase C-terminal NIH92_05735 PF00206 Lyase NIH92_05740 PF04362 Bacterial Fe(2+) trafficking NIH92_05745 PF01895 PhoU domain NIH92_05750 PF02321 Outer membrane efflux protein NIH92_05755 PF00892 EamA-like transporter family NIH92_05770 PF01964 Radical SAM ThiC family NIH92_05770 PF13667 ThiC-associated domain NIH92_05775 PF00293 NUDIX domain NIH92_05780 PF00149 Calcineurin-like phosphoesterase NIH92_05785 PF01258 Prokaryotic dksA/traR C4-type zinc finger NIH92_05790 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIH92_05795 PF01098 Cell cycle protein NIH92_05800 PF02875 Mur ligase family, glutamate ligase domain NIH92_05800 PF08245 Mur ligase middle domain NIH92_05810 PF02421 Ferrous iron transport protein B NIH92_05810 PF07670 Nucleoside recognition NIH92_05810 PF07664 Ferrous iron transport protein B C terminus NIH92_05820 PF02899 Phage integrase, N-terminal SAM-like domain NIH92_05820 PF00589 Phage integrase family NIH92_05825 PF10411 Disulfide bond isomerase protein N-terminus NIH92_05825 PF13098 Thioredoxin-like domain NIH92_05830 PF03447 Homoserine dehydrogenase, NAD binding domain NIH92_05830 PF01842 ACT domain NIH92_05830 PF00742 Homoserine dehydrogenase NIH92_05835 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_05840 PF00768 D-alanyl-D-alanine carboxypeptidase NIH92_05845 PF00196 Bacterial regulatory proteins, luxR family NIH92_05845 PF00072 Response regulator receiver domain NIH92_05850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_05850 PF00512 His Kinase A (phospho-acceptor) domain NIH92_05855 PF00072 Response regulator receiver domain NIH92_05855 PF00158 Sigma-54 interaction domain NIH92_05855 PF02954 Bacterial regulatory protein, Fis family NIH92_05860 PF00595 PDZ domain NIH92_05860 PF03572 Peptidase family S41 NIH92_05865 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NIH92_05865 PF01676 Metalloenzyme superfamily NIH92_05870 PF03739 Lipopolysaccharide export system permease LptF/LptG NIH92_05880 PF00883 Cytosol aminopeptidase family, catalytic domain NIH92_05880 PF02789 Cytosol aminopeptidase family, N-terminal domain NIH92_05900 PF00677 Lumazine binding domain NIH92_05910 PF01872 RibD C-terminal domain NIH92_05910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIH92_05915 PF03477 ATP cone domain NIH92_05920 PF00909 Ammonium Transporter Family NIH92_05925 PF00543 Nitrogen regulatory protein P-II NIH92_05945 PF01740 STAS domain NIH92_05945 PF00916 Sulfate permease family NIH92_05950 PF00582 Universal stress protein family NIH92_05970 PF00665 Integrase core domain NIH92_05985 PF00392 Bacterial regulatory proteins, gntR family NIH92_05985 PF00155 Aminotransferase class I and II NIH92_05995 PF00701 Dihydrodipicolinate synthetase family NIH92_06010 PF03573 outer membrane porin, OprD family NIH92_06015 PF00719 Inorganic pyrophosphatase NIH92_06030 PF00501 AMP-binding enzyme NIH92_06030 PF13193 AMP-binding enzyme C-terminal domain NIH92_06035 PF03989 DNA gyrase C-terminal domain, beta-propeller NIH92_06035 PF00521 DNA gyrase/topoisomerase IV, subunit A NIH92_06040 PF07690 Major Facilitator Superfamily NIH92_06045 PF03458 UPF0126 domain NIH92_06050 PF02810 SEC-C motif NIH92_06055 PF03471 Transporter associated domain NIH92_06055 PF03741 Integral membrane protein TerC family NIH92_06060 PF03641 Possible lysine decarboxylase NIH92_06065 PF07690 Major Facilitator Superfamily NIH92_06075 PF00817 impB/mucB/samB family NIH92_06075 PF11799 impB/mucB/samB family C-terminal domain NIH92_06075 PF11798 IMS family HHH motif NIH92_06095 PF08497 Radical SAM N-terminal NIH92_06095 PF11842 Domain of unknown function (DUF3362) NIH92_06095 PF04055 Radical SAM superfamily NIH92_06115 PF03358 NADPH-dependent FMN reductase NIH92_06125 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_06185 PF01327 Polypeptide deformylase NIH92_06195 PF02481 DNA recombination-mediator protein A NIH92_06195 PF17782 DprA winged helix domain NIH92_06200 PF01300 Telomere recombination NIH92_06205 PF00892 EamA-like transporter family NIH92_06210 PF00440 Bacterial regulatory proteins, tetR family NIH92_06215 PF07690 Major Facilitator Superfamily NIH92_06225 PF00255 Glutathione peroxidase NIH92_06235 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NIH92_06240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIH92_06240 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIH92_06245 PF00231 ATP synthase NIH92_06250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIH92_06250 PF00306 ATP synthase alpha/beta chain, C terminal domain NIH92_06250 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIH92_06255 PF00213 ATP synthase delta (OSCP) subunit NIH92_06260 PF00430 ATP synthase B/B' CF(0) NIH92_06265 PF00137 ATP synthase subunit C NIH92_06270 PF00119 ATP synthase A chain NIH92_06290 PF00005 ABC transporter NIH92_06295 PF00950 ABC 3 transport family NIH92_06300 PF01810 LysE type translocator NIH92_06305 PF04261 Dyp-type peroxidase family NIH92_06310 PF03949 Malic enzyme, NAD binding domain NIH92_06310 PF00390 Malic enzyme, N-terminal domain NIH92_06315 PF00750 tRNA synthetases class I (R) NIH92_06315 PF05746 DALR anticodon binding domain NIH92_06315 PF03485 Arginyl tRNA synthetase N terminal domain NIH92_06335 PF05726 Pirin C-terminal cupin domain NIH92_06335 PF02678 Pirin NIH92_06345 PF03551 Transcriptional regulator PadR-like family NIH92_06350 PF01909 Nucleotidyltransferase domain NIH92_06350 PF13427 Domain of unknown function (DUF4111) NIH92_06355 PF00958 GMP synthase C terminal domain NIH92_06355 PF02540 NAD synthase NIH92_06355 PF00117 Glutamine amidotransferase class-I NIH92_06360 PF04286 Protein of unknown function (DUF445) NIH92_06365 PF07681 DoxX NIH92_06370 PF09335 SNARE associated Golgi protein NIH92_06385 PF13614 AAA domain NIH92_06395 PF01722 BolA-like protein NIH92_06410 PF01648 4'-phosphopantetheinyl transferase superfamily NIH92_06415 PF16363 GDP-mannose 4,6 dehydratase NIH92_06430 PF00975 Thioesterase domain NIH92_06430 PF00550 Phosphopantetheine attachment site NIH92_06430 PF00501 AMP-binding enzyme NIH92_06430 PF13193 AMP-binding enzyme C-terminal domain NIH92_06430 PF00668 Condensation domain NIH92_06435 PF00975 Thioesterase domain NIH92_06435 PF14765 Polyketide synthase dehydratase NIH92_06435 PF08242 Methyltransferase domain NIH92_06435 PF00550 Phosphopantetheine attachment site NIH92_06435 PF00109 Beta-ketoacyl synthase, N-terminal domain NIH92_06435 PF16197 Ketoacyl-synthetase C-terminal extension NIH92_06435 PF02801 Beta-ketoacyl synthase, C-terminal domain NIH92_06440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_06440 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_06440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_06445 PF00501 AMP-binding enzyme NIH92_06450 PF13737 Transposase DDE domain NIH92_06455 PF03472 Autoinducer binding domain NIH92_06455 PF00196 Bacterial regulatory proteins, luxR family NIH92_06465 PF00765 Autoinducer synthase NIH92_06470 PF07690 Major Facilitator Superfamily NIH92_06470 PF00083 Sugar (and other) transporter NIH92_06475 PF00378 Enoyl-CoA hydratase/isomerase NIH92_06480 PF00378 Enoyl-CoA hydratase/isomerase NIH92_06485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_06485 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_06485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_06490 PF00501 AMP-binding enzyme NIH92_06490 PF13193 AMP-binding enzyme C-terminal domain NIH92_06495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIH92_06495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIH92_06500 PF00171 Aldehyde dehydrogenase family NIH92_06510 PF00324 Amino acid permease NIH92_06515 PF00324 Amino acid permease NIH92_06520 PF01042 Endoribonuclease L-PSP NIH92_06525 PF01168 Alanine racemase, N-terminal domain NIH92_06525 PF00842 Alanine racemase, C-terminal domain NIH92_06530 PF01266 FAD dependent oxidoreductase NIH92_06535 PF01037 Lrp/AsnC ligand binding domain NIH92_06545 PF00593 TonB dependent receptor NIH92_06545 PF07715 TonB-dependent Receptor Plug Domain NIH92_06560 PF00849 RNA pseudouridylate synthase NIH92_06585 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIH92_06585 PF04717 Type VI secretion system, phage-baseplate injector NIH92_06585 PF13296 Putative type VI secretion system Rhs element Vgr NIH92_06590 PF00109 Beta-ketoacyl synthase, N-terminal domain NIH92_06590 PF02801 Beta-ketoacyl synthase, C-terminal domain NIH92_06625 PF00694 Aconitase C-terminal domain NIH92_06625 PF00330 Aconitase family (aconitate hydratase) NIH92_06630 PF00285 Citrate synthase, C-terminal domain NIH92_06640 PF00392 Bacterial regulatory proteins, gntR family NIH92_06640 PF07729 FCD domain NIH92_06650 PF00155 Aminotransferase class I and II NIH92_06655 PF09330 D-lactate dehydrogenase, membrane binding NIH92_06655 PF01565 FAD binding domain NIH92_06660 PF01070 FMN-dependent dehydrogenase NIH92_06665 PF07729 FCD domain NIH92_06665 PF00392 Bacterial regulatory proteins, gntR family NIH92_06670 PF02652 L-lactate permease NIH92_06675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIH92_06675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIH92_06675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIH92_06675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIH92_06680 PF16363 GDP-mannose 4,6 dehydratase NIH92_06685 PF00342 Phosphoglucose isomerase NIH92_06690 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIH92_06690 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIH92_06690 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIH92_06695 PF00483 Nucleotidyl transferase NIH92_06700 PF02397 Bacterial sugar transferase NIH92_06705 PF00953 Glycosyl transferase family 4 NIH92_06710 PF01370 NAD dependent epimerase/dehydratase family NIH92_06715 PF13579 Glycosyl transferase 4-like domain NIH92_06720 PF02350 UDP-N-acetylglucosamine 2-epimerase NIH92_06725 PF01370 NAD dependent epimerase/dehydratase family NIH92_06730 PF02719 Polysaccharide biosynthesis protein NIH92_06730 PF08485 Polysaccharide biosynthesis protein C-terminal NIH92_06750 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_06760 PF01370 NAD dependent epimerase/dehydratase family NIH92_06765 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIH92_06765 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIH92_06765 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIH92_06770 PF02563 Polysaccharide biosynthesis/export protein NIH92_06770 PF10531 SLBB domain NIH92_06770 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NIH92_06775 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIH92_06780 PF13614 AAA domain NIH92_06780 PF13807 G-rich domain on putative tyrosine kinase NIH92_06780 PF02706 Chain length determinant protein NIH92_06785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIH92_06785 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIH92_06790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIH92_06790 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIH92_06795 PF03023 Lipid II flippase MurJ NIH92_06800 PF01510 N-acetylmuramoyl-L-alanine amidase NIH92_06805 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NIH92_06805 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NIH92_06820 PF01138 3' exoribonuclease family, domain 1 NIH92_06820 PF03725 3' exoribonuclease family, domain 2 NIH92_06825 PF00487 Fatty acid desaturase NIH92_06830 PF00175 Oxidoreductase NAD-binding domain NIH92_06835 PF00440 Bacterial regulatory proteins, tetR family NIH92_06840 PF00440 Bacterial regulatory proteins, tetR family NIH92_06840 PF08360 QacR-like protein, C-terminal region NIH92_06845 PF01323 DSBA-like thioredoxin domain NIH92_06855 PF13419 Haloacid dehalogenase-like hydrolase NIH92_06860 PF00106 short chain dehydrogenase NIH92_06875 PF00696 Amino acid kinase family NIH92_06875 PF00583 Acetyltransferase (GNAT) family NIH92_06880 PF09084 NMT1/THI5 like NIH92_06885 PF09084 NMT1/THI5 like NIH92_06890 PF00296 Luciferase-like monooxygenase NIH92_06895 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_06900 PF00005 ABC transporter NIH92_06905 PF08362 YcdC-like protein, C-terminal region NIH92_06905 PF00440 Bacterial regulatory proteins, tetR family NIH92_06910 PF01048 Phosphorylase superfamily NIH92_06920 PF01687 Riboflavin kinase NIH92_06920 PF06574 FAD synthetase NIH92_06925 PF06827 Zinc finger found in FPG and IleRS NIH92_06925 PF00133 tRNA synthetases class I (I, L, M and V) NIH92_06925 PF08264 Anticodon-binding domain of tRNA NIH92_06930 PF01252 Signal peptidase (SPase) II NIH92_06935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIH92_06975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIH92_06980 PF07859 alpha/beta hydrolase fold NIH92_07000 PF03466 LysR substrate binding domain NIH92_07000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_07005 PF01025 GrpE NIH92_07010 PF00012 Hsp70 protein NIH92_07030 PF13406 Transglycosylase SLT domain NIH92_07035 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NIH92_07035 PF02222 ATP-grasp domain NIH92_07040 PF00731 AIR carboxylase NIH92_07050 PF08245 Mur ligase middle domain NIH92_07050 PF02875 Mur ligase family, glutamate ligase domain NIH92_07050 PF01225 Mur ligase family, catalytic domain NIH92_07060 PF01569 PAP2 superfamily NIH92_07065 PF03741 Integral membrane protein TerC family NIH92_07075 PF03738 Glutathionylspermidine synthase preATP-grasp NIH92_07080 PF00355 Rieske [2Fe-2S] domain NIH92_07085 PF01979 Amidohydrolase family NIH92_07090 PF00156 Phosphoribosyl transferase domain NIH92_07100 PF10411 Disulfide bond isomerase protein N-terminus NIH92_07100 PF13098 Thioredoxin-like domain NIH92_07105 PF01545 Cation efflux family NIH92_07105 PF16916 Dimerisation domain of Zinc Transporter NIH92_07110 PF02583 Metal-sensitive transcriptional repressor NIH92_07115 PF01926 50S ribosome-binding GTPase NIH92_07115 PF12631 MnmE helical domain NIH92_07115 PF10396 GTP-binding protein TrmE N-terminus NIH92_07120 PF02096 60Kd inner membrane protein NIH92_07120 PF14849 YidC periplasmic domain NIH92_07125 PF01809 Putative membrane protein insertion efficiency factor NIH92_07130 PF00825 Ribonuclease P NIH92_07135 PF00468 Ribosomal protein L34 NIH92_07140 PF00308 Bacterial dnaA protein NIH92_07140 PF08299 Bacterial dnaA protein helix-turn-helix NIH92_07140 PF11638 DnaA N-terminal domain NIH92_07145 PF02767 DNA polymerase III beta subunit, central domain NIH92_07145 PF00712 DNA polymerase III beta subunit, N-terminal domain NIH92_07145 PF02768 DNA polymerase III beta subunit, C-terminal domain NIH92_07150 PF02463 RecF/RecN/SMC N terminal domain NIH92_07155 PF00204 DNA gyrase B NIH92_07155 PF00986 DNA gyrase B subunit, carboxyl terminus NIH92_07155 PF18053 DNA gyrase B subunit insert domain NIH92_07155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_07155 PF01751 Toprim domain NIH92_07165 PF09335 SNARE associated Golgi protein NIH92_07170 PF00005 ABC transporter NIH92_07170 PF12848 ABC transporter NIH92_07190 PF01521 Iron-sulphur cluster biosynthesis NIH92_07195 PF00561 alpha/beta hydrolase fold NIH92_07200 PF03702 Anhydro-N-acetylmuramic acid kinase NIH92_07205 PF00579 tRNA synthetases class I (W and Y) NIH92_07265 PF01189 16S rRNA methyltransferase RsmB/F NIH92_07265 PF01029 NusB family NIH92_07270 PF02911 Formyl transferase, C-terminal domain NIH92_07270 PF00551 Formyl transferase NIH92_07275 PF00920 Dehydratase family NIH92_07290 PF03466 LysR substrate binding domain NIH92_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_07295 PF00860 Permease family NIH92_07300 PF00311 Phosphoenolpyruvate carboxylase NIH92_07305 PF08361 MAATS-type transcriptional repressor, C-terminal region NIH92_07305 PF00440 Bacterial regulatory proteins, tetR family NIH92_07310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIH92_07315 PF00873 AcrB/AcrD/AcrF family NIH92_07325 PF00226 DnaJ domain NIH92_07325 PF01556 DnaJ C terminal domain NIH92_07325 PF00684 DnaJ central domain NIH92_07335 PF05173 Dihydrodipicolinate reductase, C-terminus NIH92_07335 PF01113 Dihydrodipicolinate reductase, N-terminus NIH92_07345 PF07690 Major Facilitator Superfamily NIH92_07350 PF00248 Aldo/keto reductase family NIH92_07355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_07355 PF03466 LysR substrate binding domain NIH92_07370 PF00392 Bacterial regulatory proteins, gntR family NIH92_07370 PF00155 Aminotransferase class I and II NIH92_07375 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_07375 PF00107 Zinc-binding dehydrogenase NIH92_07380 PF03352 Methyladenine glycosylase NIH92_07395 PF10576 Iron-sulfur binding domain of endonuclease III NIH92_07395 PF00633 Helix-hairpin-helix motif NIH92_07395 PF00730 HhH-GPD superfamily base excision DNA repair protein NIH92_07395 PF14815 NUDIX domain NIH92_07410 PF07043 Protein of unknown function (DUF1328) NIH92_07415 PF03692 Putative zinc- or iron-chelating domain NIH92_07420 PF07995 Glucose / Sorbosone dehydrogenase NIH92_07425 PF12002 MgsA AAA+ ATPase C terminal NIH92_07425 PF00004 ATPase family associated with various cellular activities (AAA) NIH92_07425 PF16193 AAA C-terminal domain NIH92_07430 PF01226 Formate/nitrite transporter NIH92_07440 PF01259 SAICAR synthetase NIH92_07450 PF00701 Dihydrodipicolinate synthetase family NIH92_07455 PF00857 Isochorismatase family NIH92_07460 PF01758 Sodium Bile acid symporter family NIH92_07465 PF01554 MatE NIH92_07470 PF04463 Protein of unknown function (DUF523) NIH92_07475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIH92_07485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIH92_07490 PF02798 Glutathione S-transferase, N-terminal domain NIH92_07490 PF14497 Glutathione S-transferase, C-terminal domain NIH92_07500 PF00324 Amino acid permease NIH92_07510 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIH92_07510 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIH92_07520 PF07702 UTRA domain NIH92_07520 PF00392 Bacterial regulatory proteins, gntR family NIH92_07525 PF05962 HutD NIH92_07530 PF01175 Urocanase Rossmann-like domain NIH92_07530 PF17391 Urocanase N-terminal domain NIH92_07530 PF17392 Urocanase C-terminal domain NIH92_07535 PF00221 Aromatic amino acid lyase NIH92_07540 PF00324 Amino acid permease NIH92_07545 PF01979 Amidohydrolase family NIH92_07550 PF00491 Arginase family NIH92_07565 PF01177 Asp/Glu/Hydantoin racemase NIH92_07570 PF01380 SIS domain NIH92_07575 PF14602 Hexapeptide repeat of succinyl-transferase NIH92_07575 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_07575 PF12804 MobA-like NTP transferase domain NIH92_07580 PF04608 Phosphatidylglycerophosphatase A NIH92_07585 PF00586 AIR synthase related protein, N-terminal domain NIH92_07585 PF02769 AIR synthase related protein, C-terminal domain NIH92_07590 PF01029 NusB family NIH92_07595 PF00885 6,7-dimethyl-8-ribityllumazine synthase NIH92_07600 PF00925 GTP cyclohydrolase II NIH92_07600 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIH92_07625 PF02580 D-Tyr-tRNA(Tyr) deacylase NIH92_07630 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NIH92_07630 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIH92_07635 PF00581 Rhodanese-like domain NIH92_07640 PF02666 Phosphatidylserine decarboxylase NIH92_07645 PF03069 Acetamidase/Formamidase family NIH92_07665 PF00512 His Kinase A (phospho-acceptor) domain NIH92_07665 PF00989 PAS fold NIH92_07665 PF11808 Phosphate regulon sensor protein PhoR NIH92_07665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_07670 PF00486 Transcriptional regulatory protein, C terminal NIH92_07670 PF00072 Response regulator receiver domain NIH92_07680 PF00106 short chain dehydrogenase NIH92_07685 PF01554 MatE NIH92_07690 PF00155 Aminotransferase class I and II NIH92_07695 PF04286 Protein of unknown function (DUF445) NIH92_07710 PF04262 Glutamate-cysteine ligase NIH92_07715 PF02600 Disulfide bond formation protein DsbB NIH92_07720 PF13296 Putative type VI secretion system Rhs element Vgr NIH92_07720 PF04717 Type VI secretion system, phage-baseplate injector NIH92_07720 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIH92_07725 PF01476 LysM domain NIH92_07725 PF00877 NlpC/P60 family NIH92_07740 PF05728 Uncharacterised protein family (UPF0227) NIH92_07745 PF00204 DNA gyrase B NIH92_07745 PF00986 DNA gyrase B subunit, carboxyl terminus NIH92_07745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_07745 PF01751 Toprim domain NIH92_07750 PF00106 short chain dehydrogenase NIH92_07755 PF04115 Ureidoglycolate lyase NIH92_07760 PF03561 Allantoicase repeat NIH92_07765 PF01494 FAD binding domain NIH92_07775 PF00860 Permease family NIH92_07780 PF00576 HIUase/Transthyretin family NIH92_07810 PF11412 Disulphide bond corrector protein DsbC NIH92_07810 PF02683 Cytochrome C biogenesis protein transmembrane region NIH92_07815 PF00990 Diguanylate cyclase, GGDEF domain NIH92_07815 PF07694 5TMR of 5TMR-LYT NIH92_07820 PF07859 alpha/beta hydrolase fold NIH92_07830 PF03960 ArsC family NIH92_07835 PF03372 Endonuclease/Exonuclease/phosphatase family NIH92_07840 PF00156 Phosphoribosyl transferase domain NIH92_07845 PF07715 TonB-dependent Receptor Plug Domain NIH92_07845 PF00593 TonB dependent receptor NIH92_07855 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NIH92_07855 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NIH92_07860 PF04101 Glycosyltransferase family 28 C-terminal domain NIH92_07860 PF03033 Glycosyltransferase family 28 N-terminal domain NIH92_07865 PF08245 Mur ligase middle domain NIH92_07865 PF01225 Mur ligase family, catalytic domain NIH92_07865 PF02875 Mur ligase family, glutamate ligase domain NIH92_07870 PF01820 D-ala D-ala ligase N-terminus NIH92_07870 PF07478 D-ala D-ala ligase C-terminus NIH92_07875 PF08478 POTRA domain, FtsQ-type NIH92_07875 PF03799 Cell division protein FtsQ NIH92_07880 PF02491 SHS2 domain inserted in FTSA NIH92_07885 PF00091 Tubulin/FtsZ family, GTPase domain NIH92_07885 PF12327 FtsZ family, C-terminal domain NIH92_07890 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NIH92_07900 PF01551 Peptidase family M23 NIH92_07905 PF17831 Pyruvate dehydrogenase E1 component middle domain NIH92_07905 PF00456 Transketolase, thiamine diphosphate binding domain NIH92_07910 PF00364 Biotin-requiring enzyme NIH92_07910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIH92_07910 PF02817 e3 binding domain NIH92_07920 PF01169 Uncharacterized protein family UPF0016 NIH92_07925 PF07715 TonB-dependent Receptor Plug Domain NIH92_07925 PF00593 TonB dependent receptor NIH92_07930 PF01613 Flavin reductase like domain NIH92_07930 PF00258 Flavodoxin NIH92_07935 PF03692 Putative zinc- or iron-chelating domain NIH92_07940 PF00571 CBS domain NIH92_07940 PF00478 IMP dehydrogenase / GMP reductase domain NIH92_07945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIH92_07945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIH92_07945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIH92_07945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIH92_07950 PF01243 Pyridoxamine 5'-phosphate oxidase NIH92_07950 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NIH92_07955 PF01368 DHH family NIH92_07955 PF02272 DHHA1 domain NIH92_07955 PF17768 RecJ OB domain NIH92_07975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIH92_07980 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NIH92_07985 PF04452 RNA methyltransferase NIH92_07990 PF00924 Mechanosensitive ion channel NIH92_08000 PF13193 AMP-binding enzyme C-terminal domain NIH92_08000 PF16177 Acetyl-coenzyme A synthetase N-terminus NIH92_08000 PF00501 AMP-binding enzyme NIH92_08005 PF00857 Isochorismatase family NIH92_08010 PF01037 Lrp/AsnC ligand binding domain NIH92_08015 PF00872 Transposase, Mutator family NIH92_08020 PF00296 Luciferase-like monooxygenase NIH92_08025 PF03358 NADPH-dependent FMN reductase NIH92_08030 PF00196 Bacterial regulatory proteins, luxR family NIH92_08030 PF00072 Response regulator receiver domain NIH92_08040 PF00512 His Kinase A (phospho-acceptor) domain NIH92_08040 PF01627 Hpt domain NIH92_08040 PF00072 Response regulator receiver domain NIH92_08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_08040 PF00672 HAMP domain NIH92_08045 PF04341 Protein of unknown function, DUF485 NIH92_08050 PF00474 Sodium:solute symporter family NIH92_08060 PF02028 BCCT, betaine/carnitine/choline family transporter NIH92_08070 PF00990 Diguanylate cyclase, GGDEF domain NIH92_08080 PF00005 ABC transporter NIH92_08080 PF17760 UvrA interaction domain NIH92_08080 PF17755 UvrA DNA-binding domain NIH92_08085 PF00440 Bacterial regulatory proteins, tetR family NIH92_08085 PF16925 Tetracyclin repressor-like, C-terminal domain NIH92_08090 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_08090 PF00107 Zinc-binding dehydrogenase NIH92_08100 PF06942 GlpM protein NIH92_08105 PF02581 Thiamine monophosphate synthase NIH92_08105 PF03070 TENA/THI-4/PQQC family NIH92_08105 PF08543 Phosphomethylpyrimidine kinase NIH92_08115 PF07690 Major Facilitator Superfamily NIH92_08120 PF00436 Single-strand binding protein family NIH92_08130 PF03591 AzlC protein NIH92_08140 PF00324 Amino acid permease NIH92_08145 PF00155 Aminotransferase class I and II NIH92_08145 PF00392 Bacterial regulatory proteins, gntR family NIH92_08150 PF00202 Aminotransferase class-III NIH92_08155 PF00171 Aldehyde dehydrogenase family NIH92_08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_08165 PF00857 Isochorismatase family NIH92_08170 PF05726 Pirin C-terminal cupin domain NIH92_08170 PF02678 Pirin NIH92_08175 PF01593 Flavin containing amine oxidoreductase NIH92_08195 PF07690 Major Facilitator Superfamily NIH92_08200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_08200 PF03466 LysR substrate binding domain NIH92_08220 PF00248 Aldo/keto reductase family NIH92_08225 PF02311 AraC-like ligand binding domain NIH92_08225 PF12833 Helix-turn-helix domain NIH92_08255 PF01638 HxlR-like helix-turn-helix NIH92_08260 PF02525 Flavodoxin-like fold NIH92_08280 PF02705 K+ potassium transporter NIH92_08305 PF00230 Major intrinsic protein NIH92_08320 PF00977 Histidine biosynthesis protein NIH92_08325 PF01636 Phosphotransferase enzyme family NIH92_08340 PF03992 Antibiotic biosynthesis monooxygenase NIH92_08355 PF00977 Histidine biosynthesis protein NIH92_08370 PF00117 Glutamine amidotransferase class-I NIH92_08375 PF00475 Imidazoleglycerol-phosphate dehydratase NIH92_08395 PF00583 Acetyltransferase (GNAT) family NIH92_08400 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NIH92_08400 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NIH92_08410 PF00512 His Kinase A (phospho-acceptor) domain NIH92_08410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_08410 PF00672 HAMP domain NIH92_08415 PF00486 Transcriptional regulatory protein, C terminal NIH92_08415 PF00072 Response regulator receiver domain NIH92_08420 PF00575 S1 RNA binding domain NIH92_08420 PF17674 HHH domain NIH92_08420 PF16921 Tex protein YqgF-like domain NIH92_08420 PF09371 Tex-like protein N-terminal domain NIH92_08425 PF00916 Sulfate permease family NIH92_08425 PF01740 STAS domain NIH92_08430 PF00106 short chain dehydrogenase NIH92_08435 PF01053 Cys/Met metabolism PLP-dependent enzyme NIH92_08440 PF00005 ABC transporter NIH92_08440 PF12848 ABC transporter NIH92_08465 PF04191 Phospholipid methyltransferase NIH92_08485 PF00529 HlyD membrane-fusion protein of T1SS NIH92_08485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIH92_08490 PF00873 AcrB/AcrD/AcrF family NIH92_08495 PF01545 Cation efflux family NIH92_08525 PF00324 Amino acid permease NIH92_08540 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIH92_08555 PF01795 MraW methylase family NIH92_08565 PF03717 Penicillin-binding Protein dimerisation domain NIH92_08565 PF00905 Penicillin binding protein transpeptidase domain NIH92_08570 PF02875 Mur ligase family, glutamate ligase domain NIH92_08570 PF01225 Mur ligase family, catalytic domain NIH92_08570 PF08245 Mur ligase middle domain NIH92_08575 PF08245 Mur ligase middle domain NIH92_08575 PF02875 Mur ligase family, glutamate ligase domain NIH92_08575 PF01225 Mur ligase family, catalytic domain NIH92_08580 PF00953 Glycosyl transferase family 4 NIH92_08590 PF13847 Methyltransferase domain NIH92_08595 PF17092 Penicillin-binding protein OB-like domain NIH92_08595 PF00905 Penicillin binding protein transpeptidase domain NIH92_08595 PF00912 Transglycosylase NIH92_08600 PF11104 Type IV pilus assembly protein PilM; NIH92_08605 PF05137 Fimbrial assembly protein (PilN) NIH92_08610 PF04350 Pilus assembly protein, PilO NIH92_08620 PF07660 Secretin and TonB N terminus short domain NIH92_08620 PF03958 Bacterial type II/III secretion system short domain NIH92_08620 PF00263 Bacterial type II and III secretion system protein NIH92_08620 PF11741 AMIN domain NIH92_08625 PF01202 Shikimate kinase NIH92_08630 PF01761 3-dehydroquinate synthase NIH92_08640 PF01645 Conserved region in glutamate synthase NIH92_08640 PF01493 GXGXG motif NIH92_08640 PF00310 Glutamine amidotransferases class-II NIH92_08640 PF04898 Glutamate synthase central domain NIH92_08645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NIH92_08645 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_08655 PF04011 LemA family NIH92_08660 PF04536 TPM domain NIH92_08670 PF07963 Prokaryotic N-terminal methylation motif NIH92_08670 PF00114 Pilin (bacterial filament) NIH92_08680 PF15864 Protein glycosylation ligase NIH92_08680 PF04932 O-Antigen ligase NIH92_08680 PF11846 Virulence factor membrane-bound polymerase, C-terminal NIH92_08685 PF00210 Ferritin-like domain NIH92_08690 PF04324 BFD-like [2Fe-2S] binding domain NIH92_08695 PF01042 Endoribonuclease L-PSP NIH92_08700 PF13291 ACT domain NIH92_08700 PF02824 TGS domain NIH92_08700 PF04607 Region found in RelA / SpoT proteins NIH92_08710 PF01192 RNA polymerase Rpb6 NIH92_08715 PF00625 Guanylate kinase NIH92_08720 PF02401 LytB protein NIH92_08760 PF00886 Ribosomal protein S16 NIH92_08765 PF05239 PRC-barrel domain NIH92_08765 PF01782 RimM N-terminal domain NIH92_08770 PF01746 tRNA (Guanine-1)-methyltransferase NIH92_08775 PF01245 Ribosomal protein L19 NIH92_08780 PF00561 alpha/beta hydrolase fold NIH92_08785 PF03280 Proteobacterial lipase chaperone protein NIH92_08790 PF09157 Pseudouridine synthase II TruB, C-terminal NIH92_08790 PF16198 tRNA pseudouridylate synthase B C-terminal domain NIH92_08790 PF01509 TruB family pseudouridylate synthase (N terminal domain) NIH92_08795 PF01925 Sulfite exporter TauE/SafE NIH92_08805 PF00892 EamA-like transporter family NIH92_08810 PF00892 EamA-like transporter family NIH92_08815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIH92_08815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIH92_08820 PF01565 FAD binding domain NIH92_08820 PF02913 FAD linked oxidases, C-terminal domain NIH92_08830 PF03992 Antibiotic biosynthesis monooxygenase NIH92_08835 PF02525 Flavodoxin-like fold NIH92_08845 PF07690 Major Facilitator Superfamily NIH92_08850 PF12805 FUSC-like inner membrane protein yccS NIH92_08855 PF00080 Copper/zinc superoxide dismutase (SODC) NIH92_08860 PF01594 AI-2E family transporter NIH92_08865 PF13614 AAA domain NIH92_08895 PF00324 Amino acid permease NIH92_08900 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIH92_08900 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIH92_08905 PF00202 Aminotransferase class-III NIH92_08910 PF04958 Arginine N-succinyltransferase beta subunit NIH92_08915 PF00171 Aldehyde dehydrogenase family NIH92_08920 PF04996 Succinylarginine dihydrolase NIH92_08925 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NIH92_08940 PF05922 Peptidase inhibitor I9 NIH92_08940 PF00082 Subtilase family NIH92_08955 PF03466 LysR substrate binding domain NIH92_08955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_08960 PF00892 EamA-like transporter family NIH92_08970 PF05746 DALR anticodon binding domain NIH92_08970 PF02092 Glycyl-tRNA synthetase beta subunit NIH92_08975 PF02091 Glycyl-tRNA synthetase alpha subunit NIH92_09000 PF00571 CBS domain NIH92_09005 PF04024 PspC domain NIH92_09015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_09015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_09015 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIH92_09015 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_09025 PF08501 Shikimate dehydrogenase substrate binding domain NIH92_09025 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NIH92_09025 PF01488 Shikimate / quinate 5-dehydrogenase NIH92_09030 PF01218 Coproporphyrinogen III oxidase NIH92_09035 PF00925 GTP cyclohydrolase II NIH92_09040 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NIH92_09040 PF02779 Transketolase, pyrimidine binding domain NIH92_09040 PF02780 Transketolase, C-terminal domain NIH92_09045 PF00459 Inositol monophosphatase family NIH92_09050 PF03880 DbpA RNA binding domain NIH92_09050 PF00270 DEAD/DEAH box helicase NIH92_09050 PF12343 Cold shock protein DEAD box A NIH92_09050 PF00271 Helicase conserved C-terminal domain NIH92_09060 PF00005 ABC transporter NIH92_09065 PF02405 Permease MlaE NIH92_09075 PF05494 MlaC protein NIH92_09085 PF01544 CorA-like Mg2+ transporter protein NIH92_09090 PF03641 Possible lysine decarboxylase NIH92_09095 PF00293 NUDIX domain NIH92_09100 PF00156 Phosphoribosyl transferase domain NIH92_09105 PF00270 DEAD/DEAH box helicase NIH92_09105 PF00271 Helicase conserved C-terminal domain NIH92_09105 PF17191 RecG wedge domain NIH92_09120 PF01553 Acyltransferase NIH92_09130 PF00375 Sodium:dicarboxylate symporter family NIH92_09140 PF01926 50S ribosome-binding GTPase NIH92_09145 PF02082 Transcriptional regulator NIH92_09150 PF00970 Oxidoreductase FAD-binding domain NIH92_09150 PF00042 Globin NIH92_09150 PF00175 Oxidoreductase NAD-binding domain NIH92_09155 PF05872 Bacterial protein of unknown function (DUF853) NIH92_09160 PF01053 Cys/Met metabolism PLP-dependent enzyme NIH92_09165 PF00117 Glutamine amidotransferase class-I NIH92_09170 PF00338 Ribosomal protein S10p/S20e NIH92_09175 PF00297 Ribosomal protein L3 NIH92_09180 PF00573 Ribosomal protein L4/L1 family NIH92_09185 PF00276 Ribosomal protein L23 NIH92_09190 PF00181 Ribosomal Proteins L2, RNA binding domain NIH92_09190 PF03947 Ribosomal Proteins L2, C-terminal domain NIH92_09195 PF00203 Ribosomal protein S19 NIH92_09200 PF00237 Ribosomal protein L22p/L17e NIH92_09210 PF00252 Ribosomal protein L16p/L10e NIH92_09215 PF00831 Ribosomal L29 protein NIH92_09220 PF00366 Ribosomal protein S17 NIH92_09225 PF00238 Ribosomal protein L14p/L23e NIH92_09230 PF00467 KOW motif NIH92_09230 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NIH92_09235 PF00281 Ribosomal protein L5 NIH92_09235 PF00673 ribosomal L5P family C-terminus NIH92_09240 PF00253 Ribosomal protein S14p/S29e NIH92_09245 PF00410 Ribosomal protein S8 NIH92_09250 PF00347 Ribosomal protein L6 NIH92_09255 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NIH92_09260 PF03719 Ribosomal protein S5, C-terminal domain NIH92_09260 PF00333 Ribosomal protein S5, N-terminal domain NIH92_09265 PF00327 Ribosomal protein L30p/L7e NIH92_09270 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NIH92_09275 PF00344 SecY translocase NIH92_09280 PF00444 Ribosomal protein L36 NIH92_09285 PF00416 Ribosomal protein S13/S18 NIH92_09290 PF00411 Ribosomal protein S11 NIH92_09295 PF00163 Ribosomal protein S4/S9 N-terminal domain NIH92_09295 PF01479 S4 domain NIH92_09300 PF01000 RNA polymerase Rpb3/RpoA insert domain NIH92_09300 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NIH92_09300 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NIH92_09305 PF01196 Ribosomal protein L17 NIH92_09310 PF00743 Flavin-binding monooxygenase-like NIH92_09315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_09315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_09315 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_09320 PF03937 Flavinator of succinate dehydrogenase NIH92_09350 PF09526 Probable metal-binding protein (DUF2387) NIH92_09355 PF01432 Peptidase family M3 NIH92_09360 PF17876 Cold shock domain NIH92_09360 PF08461 Ribonuclease R winged-helix domain NIH92_09360 PF08206 Ribonuclease B OB domain NIH92_09360 PF00773 RNB domain NIH92_09360 PF00575 S1 RNA binding domain NIH92_09405 PF01557 Fumarylacetoacetate (FAA) hydrolase family NIH92_09410 PF12833 Helix-turn-helix domain NIH92_09415 PF00892 EamA-like transporter family NIH92_09420 PF03631 Virulence factor BrkB NIH92_09425 PF03358 NADPH-dependent FMN reductase NIH92_09450 PF02130 Uncharacterized protein family UPF0054 NIH92_09455 PF02562 PhoH-like protein NIH92_09460 PF04055 Radical SAM superfamily NIH92_09460 PF01938 TRAM domain NIH92_09460 PF00919 Uncharacterized protein family UPF0004 NIH92_09465 PF01551 Peptidase family M23 NIH92_09465 PF10145 Phage-related minor tail protein NIH92_09465 PF01464 Transglycosylase SLT domain NIH92_09475 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NIH92_09475 PF00056 lactate/malate dehydrogenase, NAD binding domain NIH92_09495 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NIH92_09500 PF01066 CDP-alcohol phosphatidyltransferase NIH92_09545 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_09545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_09545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_09550 PF00440 Bacterial regulatory proteins, tetR family NIH92_09550 PF17932 Tetracyclin repressor-like, C-terminal domain NIH92_09565 PF01039 Carboxyl transferase domain NIH92_09570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_09570 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_09570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_09580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIH92_09580 PF02785 Biotin carboxylase C-terminal domain NIH92_09580 PF00364 Biotin-requiring enzyme NIH92_09580 PF00289 Biotin carboxylase, N-terminal domain NIH92_09590 PF04386 Stringent starvation protein B NIH92_09595 PF00043 Glutathione S-transferase, C-terminal domain NIH92_09595 PF13417 Glutathione S-transferase, N-terminal domain NIH92_09600 PF00380 Ribosomal protein S9/S16 NIH92_09605 PF00572 Ribosomal protein L13 NIH92_09610 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NIH92_09615 PF00398 Ribosomal RNA adenine dimethylase NIH92_09620 PF00149 Calcineurin-like phosphoesterase NIH92_09640 PF16360 GTP-binding GTPase Middle Region NIH92_09640 PF01926 50S ribosome-binding GTPase NIH92_09640 PF13167 GTP-binding GTPase N-terminal NIH92_09650 PF13091 PLD-like domain NIH92_09655 PF10518 TAT (twin-arginine translocation) pathway signal sequence NIH92_09655 PF00149 Calcineurin-like phosphoesterase NIH92_09660 PF01389 OmpA-like transmembrane domain NIH92_09660 PF00691 OmpA family NIH92_09665 PF00990 Diguanylate cyclase, GGDEF domain NIH92_09665 PF17152 Periplasmic sensor domain NIH92_09700 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_09700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIH92_09710 PF04273 Putative phosphatase (DUF442) NIH92_09710 PF00753 Metallo-beta-lactamase superfamily NIH92_09715 PF00561 alpha/beta hydrolase fold NIH92_09720 PF00085 Thioredoxin NIH92_09725 PF03061 Thioesterase superfamily NIH92_09735 PF04461 Protein of unknown function (DUF520) NIH92_09745 PF01266 FAD dependent oxidoreductase NIH92_09745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIH92_09755 PF03795 YCII-related domain NIH92_09760 PF04279 Intracellular septation protein A NIH92_09765 PF02811 PHP domain NIH92_09770 PF01062 Bestrophin, RFP-TM, chloride channel NIH92_09775 PF04002 RadC-like JAB domain NIH92_09780 PF04127 DNA / pantothenate metabolism flavoprotein NIH92_09780 PF02441 Flavoprotein NIH92_09785 PF07549 SecD/SecF GG Motif NIH92_09785 PF02355 Protein export membrane protein NIH92_09790 PF02355 Protein export membrane protein NIH92_09790 PF07549 SecD/SecF GG Motif NIH92_09790 PF13721 SecD export protein N-terminal TM region NIH92_09795 PF02699 Preprotein translocase subunit NIH92_09800 PF01702 Queuine tRNA-ribosyltransferase NIH92_09815 PF02547 Queuosine biosynthesis protein NIH92_09825 PF00512 His Kinase A (phospho-acceptor) domain NIH92_09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_09825 PF07689 KaiB domain NIH92_09830 PF03710 Glutamate-ammonia ligase adenylyltransferase NIH92_09830 PF08335 GlnD PII-uridylyltransferase NIH92_09835 PF01063 Amino-transferase class IV NIH92_09850 PF01522 Polysaccharide deacetylase NIH92_09855 PF00535 Glycosyl transferase family 2 NIH92_09860 PF13439 Glycosyltransferase Family 4 NIH92_09860 PF00534 Glycosyl transferases group 1 NIH92_09885 PF17102 Stealth protein CR3, conserved region 3 NIH92_09885 PF11380 Stealth protein CR2, conserved region 2 NIH92_09885 PF17101 Stealth protein CR1, conserved region 1 NIH92_09890 PF02938 GAD domain NIH92_09890 PF01336 OB-fold nucleic acid binding domain NIH92_09890 PF00152 tRNA synthetases class II (D, K and N) NIH92_09900 PF07715 TonB-dependent Receptor Plug Domain NIH92_09900 PF00593 TonB dependent receptor NIH92_09920 PF06146 Phosphate-starvation-inducible E NIH92_09925 PF00043 Glutathione S-transferase, C-terminal domain NIH92_09925 PF02798 Glutathione S-transferase, N-terminal domain NIH92_09930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_09930 PF03466 LysR substrate binding domain NIH92_09935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_09935 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIH92_09935 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_09935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_09940 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIH92_09940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_09940 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_09940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_09950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_09950 PF00512 His Kinase A (phospho-acceptor) domain NIH92_09950 PF00672 HAMP domain NIH92_09955 PF00072 Response regulator receiver domain NIH92_09955 PF00486 Transcriptional regulatory protein, C terminal NIH92_09960 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NIH92_09980 PF01923 Cobalamin adenosyltransferase NIH92_09985 PF07715 TonB-dependent Receptor Plug Domain NIH92_09985 PF00593 TonB dependent receptor NIH92_09990 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NIH92_09995 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_10020 PF00290 Tryptophan synthase alpha chain NIH92_10025 PF01039 Carboxyl transferase domain NIH92_10030 PF08245 Mur ligase middle domain NIH92_10030 PF02875 Mur ligase family, glutamate ligase domain NIH92_10045 PF00753 Metallo-beta-lactamase superfamily NIH92_10050 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIH92_10050 PF00578 AhpC/TSA family NIH92_10055 PF02810 SEC-C motif NIH92_10055 PF07517 SecA DEAD-like domain NIH92_10055 PF01043 SecA preprotein cross-linking domain NIH92_10055 PF07516 SecA Wing and Scaffold domain NIH92_10065 PF07690 Major Facilitator Superfamily NIH92_10065 PF00083 Sugar (and other) transporter NIH92_10070 PF03006 Haemolysin-III related NIH92_10095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIH92_10095 PF00378 Enoyl-CoA hydratase/isomerase NIH92_10095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIH92_10100 PF02803 Thiolase, C-terminal domain NIH92_10100 PF00108 Thiolase, N-terminal domain NIH92_10105 PF12833 Helix-turn-helix domain NIH92_10105 PF02311 AraC-like ligand binding domain NIH92_10110 PF02515 CoA-transferase family III NIH92_10115 PF04966 Carbohydrate-selective porin, OprB family NIH92_10120 PF01011 PQQ enzyme repeat NIH92_10125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIH92_10125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIH92_10135 PF00893 Small Multidrug Resistance protein NIH92_10145 PF02803 Thiolase, C-terminal domain NIH92_10145 PF00108 Thiolase, N-terminal domain NIH92_10155 PF13505 Outer membrane protein beta-barrel domain NIH92_10155 PF00691 OmpA family NIH92_10165 PF01139 tRNA-splicing ligase RtcB NIH92_10170 PF00324 Amino acid permease NIH92_10175 PF08468 Methyltransferase small domain N-terminal NIH92_10175 PF05175 Methyltransferase small domain NIH92_10180 PF00860 Permease family NIH92_10185 PF00679 Elongation factor G C-terminus NIH92_10185 PF00009 Elongation factor Tu GTP binding domain NIH92_10185 PF03144 Elongation factor Tu domain 2 NIH92_10190 PF01741 Large-conductance mechanosensitive channel, MscL NIH92_10205 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NIH92_10205 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NIH92_10205 PF06827 Zinc finger found in FPG and IleRS NIH92_10210 PF02245 Methylpurine-DNA glycosylase (MPG) NIH92_10230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIH92_10245 PF13098 Thioredoxin-like domain NIH92_10245 PF10411 Disulfide bond isomerase protein N-terminus NIH92_10250 PF01571 Aminomethyltransferase folate-binding domain NIH92_10260 PF04343 Protein of unknown function, DUF488 NIH92_10265 PF03831 PhnA domain NIH92_10265 PF08274 PhnA Zinc-Ribbon NIH92_10270 PF07411 Domain of unknown function (DUF1508) NIH92_10275 PF04073 Aminoacyl-tRNA editing domain NIH92_10275 PF03129 Anticodon binding domain NIH92_10275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIH92_10280 PF00873 AcrB/AcrD/AcrF family NIH92_10295 PF00072 Response regulator receiver domain NIH92_10300 PF00072 Response regulator receiver domain NIH92_10305 PF01584 CheW-like domain NIH92_10310 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NIH92_10310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIH92_10315 PF01584 CheW-like domain NIH92_10315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_10315 PF01627 Hpt domain NIH92_10315 PF00072 Response regulator receiver domain NIH92_10325 PF07687 Peptidase dimerisation domain NIH92_10325 PF01546 Peptidase family M20/M25/M40 NIH92_10330 PF08085 Entericidin EcnA/B family NIH92_10340 PF04304 Protein of unknown function (DUF454) NIH92_10345 PF17969 L,D-transpeptidase C-terminal domain NIH92_10345 PF03734 L,D-transpeptidase catalytic domain NIH92_10385 PF00667 FAD binding domain NIH92_10385 PF00258 Flavodoxin NIH92_10385 PF00175 Oxidoreductase NAD-binding domain NIH92_10395 PF12805 FUSC-like inner membrane protein yccS NIH92_10400 PF07690 Major Facilitator Superfamily NIH92_10405 PF00881 Nitroreductase family NIH92_10420 PF01235 Sodium:alanine symporter family NIH92_10425 PF01734 Patatin-like phospholipase NIH92_10430 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_10430 PF13291 ACT domain NIH92_10435 PF05992 SbmA/BacA-like family NIH92_10465 PF02934 GatB/GatE catalytic domain NIH92_10465 PF02637 GatB domain NIH92_10470 PF01425 Amidase NIH92_10475 PF02686 Glu-tRNAGln amidotransferase C subunit NIH92_10485 PF04085 rod shape-determining protein MreC NIH92_10490 PF04093 rod shape-determining protein MreD NIH92_10495 PF02545 Maf-like protein NIH92_10500 PF10150 Ribonuclease E/G family NIH92_10500 PF00575 S1 RNA binding domain NIH92_10510 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NIH92_10510 PF06974 Protein of unknown function (DUF1298) NIH92_10515 PF01507 Phosphoadenosine phosphosulfate reductase family NIH92_10530 PF02525 Flavodoxin-like fold NIH92_10550 PF02673 Bacitracin resistance protein BacA NIH92_10555 PF06719 AraC-type transcriptional regulator N-terminus NIH92_10555 PF12833 Helix-turn-helix domain NIH92_10560 PF00550 Phosphopantetheine attachment site NIH92_10560 PF14765 Polyketide synthase dehydratase NIH92_10560 PF08659 KR domain NIH92_10560 PF00109 Beta-ketoacyl synthase, N-terminal domain NIH92_10560 PF16197 Ketoacyl-synthetase C-terminal extension NIH92_10560 PF02801 Beta-ketoacyl synthase, C-terminal domain NIH92_10560 PF08990 Erythronolide synthase docking NIH92_10560 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_10560 PF00698 Acyl transferase domain NIH92_10560 PF09277 Erythronolide synthase, docking NIH92_10565 PF01965 DJ-1/PfpI family NIH92_10575 PF00324 Amino acid permease NIH92_10580 PF04303 PrpF protein NIH92_10585 PF00348 Polyprenyl synthetase NIH92_10590 PF04237 YjbR NIH92_10595 PF01145 SPFH domain / Band 7 family NIH92_10605 PF01734 Patatin-like phospholipase NIH92_10625 PF08019 Phosphoethanolamine transferase EptA/EptB NIH92_10625 PF00884 Sulfatase NIH92_10630 PF00072 Response regulator receiver domain NIH92_10630 PF00486 Transcriptional regulatory protein, C terminal NIH92_10635 PF08521 Two-component sensor kinase N-terminal NIH92_10635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_10635 PF00512 His Kinase A (phospho-acceptor) domain NIH92_10645 PF00909 Ammonium Transporter Family NIH92_10650 PF03466 LysR substrate binding domain NIH92_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_10670 PF00133 tRNA synthetases class I (I, L, M and V) NIH92_10670 PF10458 Valyl tRNA synthetase tRNA binding arm NIH92_10670 PF08264 Anticodon-binding domain of tRNA NIH92_10690 PF01906 Putative heavy-metal-binding NIH92_10695 PF01906 Putative heavy-metal-binding NIH92_10700 PF02321 Outer membrane efflux protein NIH92_10705 PF00873 AcrB/AcrD/AcrF family NIH92_10710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIH92_10710 PF00529 HlyD membrane-fusion protein of T1SS NIH92_10715 PF01569 PAP2 superfamily NIH92_10725 PF00348 Polyprenyl synthetase NIH92_10735 PF00829 Ribosomal prokaryotic L21 protein NIH92_10740 PF01016 Ribosomal L27 protein NIH92_10745 PF03548 Outer membrane lipoprotein carrier protein LolA NIH92_10755 PF02403 Seryl-tRNA synthetase N-terminal domain NIH92_10755 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIH92_10760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIH92_10760 PF10414 Sirohaem synthase dimerisation region NIH92_10760 PF14824 Sirohaem biosynthesis protein central NIH92_10765 PF00588 SpoU rRNA Methylase family NIH92_10770 PF01638 HxlR-like helix-turn-helix NIH92_10775 PF03358 NADPH-dependent FMN reductase NIH92_10780 PF13520 Amino acid permease NIH92_10785 PF00465 Iron-containing alcohol dehydrogenase NIH92_10795 PF03099 Biotin/lipoate A/B protein ligase family NIH92_10800 PF04359 Protein of unknown function (DUF493) NIH92_10805 PF03979 Sigma-70 factor, region 1.1 NIH92_10805 PF04546 Sigma-70, non-essential region NIH92_10805 PF04542 Sigma-70 region 2 NIH92_10805 PF04539 Sigma-70 region 3 NIH92_10805 PF04545 Sigma-70, region 4 NIH92_10805 PF00140 Sigma-70 factor, region 1.2 NIH92_10825 PF17773 UPF0176 acylphosphatase like domain NIH92_10825 PF00581 Rhodanese-like domain NIH92_10835 PF00285 Citrate synthase, C-terminal domain NIH92_10840 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIH92_10845 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIH92_10850 PF02910 Fumarate reductase flavoprotein C-term NIH92_10850 PF00890 FAD binding domain NIH92_10855 PF13085 2Fe-2S iron-sulfur cluster binding domain NIH92_10870 PF16870 2-oxoglutarate dehydrogenase C-terminal NIH92_10870 PF02779 Transketolase, pyrimidine binding domain NIH92_10870 PF16078 2-oxoglutarate dehydrogenase N-terminus NIH92_10870 PF00676 Dehydrogenase E1 component NIH92_10875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIH92_10875 PF00364 Biotin-requiring enzyme NIH92_10875 PF02817 e3 binding domain NIH92_10880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIH92_10880 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_10885 PF00549 CoA-ligase NIH92_10885 PF08442 ATP-grasp domain NIH92_10890 PF00549 CoA-ligase NIH92_10890 PF02629 CoA binding domain NIH92_10895 PF00579 tRNA synthetases class I (W and Y) NIH92_10900 PF05661 Protein of unknown function (DUF808) NIH92_10905 PF04228 Putative neutral zinc metallopeptidase NIH92_10910 PF00999 Sodium/hydrogen exchanger family NIH92_10925 PF09587 Bacterial capsule synthesis protein PGA_cap NIH92_10935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIH92_10940 PF00582 Universal stress protein family NIH92_10945 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_10950 PF01272 Transcription elongation factor, GreA/GreB, C-term NIH92_10950 PF03449 Transcription elongation factor, N-terminal NIH92_10955 PF02142 MGS-like domain NIH92_10955 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NIH92_10955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIH92_10960 PF00117 Glutamine amidotransferase class-I NIH92_10960 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NIH92_10975 PF01985 CRS1 / YhbY (CRM) domain NIH92_10980 PF01728 FtsJ-like methyltransferase NIH92_10985 PF00004 ATPase family associated with various cellular activities (AAA) NIH92_10985 PF17862 AAA+ lid domain NIH92_10985 PF01434 Peptidase family M41 NIH92_10985 PF06480 FtsH Extracellular NIH92_10990 PF00809 Pterin binding enzyme NIH92_11010 PF09423 PhoD-like phosphatase NIH92_11010 PF16655 PhoD-like phosphatase, N-terminal domain NIH92_11025 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NIH92_11025 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NIH92_11040 PF00083 Sugar (and other) transporter NIH92_11045 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NIH92_11045 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NIH92_11050 PF01266 FAD dependent oxidoreductase NIH92_11050 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NIH92_11055 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NIH92_11055 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NIH92_11060 PF00781 Diacylglycerol kinase catalytic domain NIH92_11065 PF00149 Calcineurin-like phosphoesterase NIH92_11075 PF00166 Chaperonin 10 Kd subunit NIH92_11080 PF00118 TCP-1/cpn60 chaperonin family NIH92_11085 PF01219 Prokaryotic diacylglycerol kinase NIH92_11095 PF03009 Glycerophosphoryl diester phosphodiesterase family NIH92_11100 PF00873 AcrB/AcrD/AcrF family NIH92_11110 PF01435 Peptidase family M48 NIH92_11120 PF01464 Transglycosylase SLT domain NIH92_11125 PF01171 PP-loop family NIH92_11135 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIH92_11135 PF01464 Transglycosylase SLT domain NIH92_11140 PF03449 Transcription elongation factor, N-terminal NIH92_11140 PF01272 Transcription elongation factor, GreA/GreB, C-term NIH92_11155 PF00550 Phosphopantetheine attachment site NIH92_11155 PF00501 AMP-binding enzyme NIH92_11155 PF13193 AMP-binding enzyme C-terminal domain NIH92_11155 PF00975 Thioesterase domain NIH92_11155 PF00668 Condensation domain NIH92_11210 PF00216 Bacterial DNA-binding protein NIH92_11235 PF13401 AAA domain NIH92_11235 PF01471 Putative peptidoglycan binding domain NIH92_11265 PF10502 Signal peptidase, peptidase S26 NIH92_11300 PF03237 Terminase-like family NIH92_11315 PF06074 Protein of unknown function (DUF935) NIH92_11320 PF04233 Phage Mu protein F like protein NIH92_11325 PF05069 Phage virion morphogenesis family NIH92_11340 PF10124 Mu-like prophage major head subunit gpT NIH92_11435 PF00881 Nitroreductase family NIH92_11450 PF02595 Glycerate kinase family NIH92_11455 PF00384 Molybdopterin oxidoreductase NIH92_11460 PF02634 FdhD/NarQ family NIH92_11465 PF06803 Protein of unknown function (DUF1232) NIH92_11470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIH92_11470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIH92_11470 PF11890 Domain of unknown function (DUF3410) NIH92_11475 PF00152 tRNA synthetases class II (D, K and N) NIH92_11485 PF18073 Rubredoxin metal binding domain NIH92_11490 PF00324 Amino acid permease NIH92_11500 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NIH92_11500 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NIH92_11505 PF01678 Diaminopimelate epimerase NIH92_11510 PF01810 LysE type translocator NIH92_11515 PF00589 Phage integrase family NIH92_11515 PF02899 Phage integrase, N-terminal SAM-like domain NIH92_11520 PF01012 Electron transfer flavoprotein domain NIH92_11525 PF01012 Electron transfer flavoprotein domain NIH92_11525 PF00766 Electron transfer flavoprotein FAD-binding domain NIH92_11530 PF00521 DNA gyrase/topoisomerase IV, subunit A NIH92_11530 PF03989 DNA gyrase C-terminal domain, beta-propeller NIH92_11545 PF00535 Glycosyl transferase family 2 NIH92_11565 PF13533 Biotin-lipoyl like NIH92_11575 PF00266 Aminotransferase class-V NIH92_11590 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NIH92_11600 PF02687 FtsX-like permease family NIH92_11600 PF12704 MacB-like periplasmic core domain NIH92_11605 PF00005 ABC transporter NIH92_11610 PF03772 Competence protein NIH92_11610 PF13567 Domain of unknown function (DUF4131) NIH92_11610 PF00753 Metallo-beta-lactamase superfamily NIH92_11620 PF06965 Na+/H+ antiporter 1 NIH92_11620 PF01343 Peptidase family S49 NIH92_11625 PF12697 Alpha/beta hydrolase family NIH92_11630 PF00551 Formyl transferase NIH92_11635 PF02769 AIR synthase related protein, C-terminal domain NIH92_11635 PF00586 AIR synthase related protein, N-terminal domain NIH92_11640 PF01594 AI-2E family transporter NIH92_11645 PF00308 Bacterial dnaA protein NIH92_11645 PF08299 Bacterial dnaA protein helix-turn-helix NIH92_11645 PF11638 DnaA N-terminal domain NIH92_11680 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIH92_11680 PF00588 SpoU rRNA Methylase family NIH92_11685 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NIH92_11695 PF00691 OmpA family NIH92_11700 PF07676 WD40-like Beta Propeller Repeat NIH92_11700 PF04052 TolB amino-terminal domain NIH92_11710 PF02472 Biopolymer transport protein ExbD/TolR NIH92_11715 PF01618 MotA/TolQ/ExbB proton channel family NIH92_11720 PF03061 Thioesterase superfamily NIH92_11725 PF01546 Peptidase family M20/M25/M40 NIH92_11725 PF07687 Peptidase dimerisation domain NIH92_11730 PF17864 RuvB AAA lid domain NIH92_11730 PF05491 RuvB C-terminal winged helix domain NIH92_11730 PF05496 Holliday junction DNA helicase RuvB P-loop domain NIH92_11735 PF07499 RuvA, C-terminal domain NIH92_11735 PF01330 RuvA N terminal domain NIH92_11740 PF01966 HD domain NIH92_11745 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NIH92_11745 PF02769 AIR synthase related protein, C-terminal domain NIH92_11745 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NIH92_11750 PF07690 Major Facilitator Superfamily NIH92_11760 PF01784 NIF3 (NGG1p interacting factor 3) NIH92_11765 PF00378 Enoyl-CoA hydratase/isomerase NIH92_11770 PF01467 Cytidylyltransferase-like NIH92_11770 PF00293 NUDIX domain NIH92_11780 PF00578 AhpC/TSA family NIH92_11795 PF06508 Queuosine biosynthesis protein QueC NIH92_11805 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NIH92_11805 PF14602 Hexapeptide repeat of succinyl-transferase NIH92_11805 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_11815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_11815 PF03466 LysR substrate binding domain NIH92_11820 PF00005 ABC transporter NIH92_11820 PF12857 TOBE-like domain NIH92_11825 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_11830 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_11845 PF01063 Amino-transferase class IV NIH92_11850 PF02618 YceG-like family NIH92_11855 PF02223 Thymidylate kinase NIH92_11865 PF00890 FAD binding domain NIH92_11865 PF02910 Fumarate reductase flavoprotein C-term NIH92_11870 PF13180 PDZ domain NIH92_11880 PF00679 Elongation factor G C-terminus NIH92_11880 PF00009 Elongation factor Tu GTP binding domain NIH92_11880 PF03144 Elongation factor Tu domain 2 NIH92_11880 PF06421 GTP-binding protein LepA C-terminus NIH92_11885 PF10502 Signal peptidase, peptidase S26 NIH92_11895 PF00035 Double-stranded RNA binding motif NIH92_11895 PF14622 Ribonuclease-III-like NIH92_11900 PF01926 50S ribosome-binding GTPase NIH92_11900 PF07650 KH domain NIH92_11910 PF02565 Recombination protein O C terminal NIH92_11910 PF11967 Recombination protein O N terminal NIH92_11915 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NIH92_11920 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NIH92_11925 PF00106 short chain dehydrogenase NIH92_11955 PF00155 Aminotransferase class I and II NIH92_11965 PF17151 Periplasmic sensor domain NIH92_11965 PF00990 Diguanylate cyclase, GGDEF domain NIH92_11975 PF00271 Helicase conserved C-terminal domain NIH92_11975 PF04851 Type III restriction enzyme, res subunit NIH92_11975 PF02151 UvrB/uvrC motif NIH92_11975 PF12344 Ultra-violet resistance protein B NIH92_11975 PF17757 UvrB interaction domain NIH92_11985 PF00892 EamA-like transporter family NIH92_11990 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIH92_11990 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIH92_12005 PF01018 GTP1/OBG NIH92_12005 PF01926 50S ribosome-binding GTPase NIH92_12010 PF00696 Amino acid kinase family NIH92_12010 PF01472 PUA domain NIH92_12020 PF07759 Protein of unknown function (DUF1615) NIH92_12025 PF01207 Dihydrouridine synthase (Dus) NIH92_12030 PF03060 Nitronate monooxygenase NIH92_12045 PF02350 UDP-N-acetylglucosamine 2-epimerase NIH92_12075 PF00875 DNA photolyase NIH92_12075 PF03441 FAD binding domain of DNA photolyase NIH92_12080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIH92_12085 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_12090 PF07943 Penicillin-binding protein 5, C-terminal domain NIH92_12090 PF00768 D-alanyl-D-alanine carboxypeptidase NIH92_12100 PF03971 Monomeric isocitrate dehydrogenase NIH92_12105 PF00849 RNA pseudouridylate synthase NIH92_12110 PF00180 Isocitrate/isopropylmalate dehydrogenase NIH92_12130 PF06779 Uncharacterised MFS-type transporter YbfB NIH92_12135 PF03466 LysR substrate binding domain NIH92_12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_12140 PF00375 Sodium:dicarboxylate symporter family NIH92_12145 PF02567 Phenazine biosynthesis-like protein NIH92_12150 PF05193 Peptidase M16 inactive domain NIH92_12150 PF00675 Insulinase (Peptidase family M16) NIH92_12175 PF02581 Thiamine monophosphate synthase NIH92_12180 PF00202 Aminotransferase class-III NIH92_12190 PF00849 RNA pseudouridylate synthase NIH92_12195 PF00271 Helicase conserved C-terminal domain NIH92_12195 PF00176 SNF2 family N-terminal domain NIH92_12195 PF18337 RapA N-terminal Tudor like domain NIH92_12195 PF18339 RapA N-terminal Tudor like domain 1 NIH92_12195 PF12137 RNA polymerase recycling family C-terminal NIH92_12215 PF00440 Bacterial regulatory proteins, tetR family NIH92_12220 PF00175 Oxidoreductase NAD-binding domain NIH92_12220 PF00111 2Fe-2S iron-sulfur cluster binding domain NIH92_12220 PF00970 Oxidoreductase FAD-binding domain NIH92_12225 PF00487 Fatty acid desaturase NIH92_12235 PF17754 MftR C-terminal domain NIH92_12235 PF00440 Bacterial regulatory proteins, tetR family NIH92_12245 PF00202 Aminotransferase class-III NIH92_12250 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIH92_12255 PF00171 Aldehyde dehydrogenase family NIH92_12260 PF01037 Lrp/AsnC ligand binding domain NIH92_12265 PF00205 Thiamine pyrophosphate enzyme, central domain NIH92_12265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIH92_12265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIH92_12270 PF00324 Amino acid permease NIH92_12275 PF12849 PBP superfamily domain NIH92_12280 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_12285 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_12290 PF00005 ABC transporter NIH92_12295 PF08496 Peptidase family S49 N-terminal NIH92_12295 PF01343 Peptidase family S49 NIH92_12310 PF00206 Lyase NIH92_12310 PF08328 Adenylosuccinate lyase C-terminal NIH92_12315 PF04356 Protein of unknown function (DUF489) NIH92_12325 PF00293 NUDIX domain NIH92_12325 PF13344 Haloacid dehalogenase-like hydrolase NIH92_12330 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_12335 PF07943 Penicillin-binding protein 5, C-terminal domain NIH92_12335 PF00768 D-alanyl-D-alanine carboxypeptidase NIH92_12350 PF01975 Survival protein SurE NIH92_12355 PF01551 Peptidase family M23 NIH92_12355 PF01476 LysM domain NIH92_12360 PF03466 LysR substrate binding domain NIH92_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_12365 PF05362 Lon protease (S16) C-terminal proteolytic domain NIH92_12365 PF13654 AAA domain NIH92_12370 PF07690 Major Facilitator Superfamily NIH92_12375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIH92_12380 PF13593 SBF-like CPA transporter family (DUF4137) NIH92_12385 PF01197 Ribosomal protein L31 NIH92_12400 PF04055 Radical SAM superfamily NIH92_12405 PF08207 Elongation factor P (EF-P) KOW-like domain NIH92_12405 PF09285 Elongation factor P, C-terminal NIH92_12405 PF01132 Elongation factor P (EF-P) OB domain NIH92_12410 PF02554 Carbon starvation protein CstA NIH92_12410 PF13722 5TM C-terminal transporter carbon starvation CstA NIH92_12415 PF04328 Selenoprotein, putative NIH92_12450 PF06018 CodY GAF-like domain NIH92_12450 PF17853 GGDEF-like domain NIH92_12450 PF13556 PucR C-terminal helix-turn-helix domain NIH92_12465 PF00171 Aldehyde dehydrogenase family NIH92_12470 PF00324 Amino acid permease NIH92_12475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_12475 PF03466 LysR substrate binding domain NIH92_12480 PF02028 BCCT, betaine/carnitine/choline family transporter NIH92_12485 PF02028 BCCT, betaine/carnitine/choline family transporter NIH92_12490 PF00355 Rieske [2Fe-2S] domain NIH92_12490 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIH92_12495 PF00171 Aldehyde dehydrogenase family NIH92_12505 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_12505 PF18113 Rubredoxin binding C-terminal domain NIH92_12510 PF01266 FAD dependent oxidoreductase NIH92_12510 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIH92_12530 PF00892 EamA-like transporter family NIH92_12540 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NIH92_12545 PF00083 Sugar (and other) transporter NIH92_12550 PF13378 Enolase C-terminal domain-like NIH92_12550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIH92_12555 PF00698 Acyl transferase domain NIH92_12555 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_12555 PF14765 Polyketide synthase dehydratase NIH92_12555 PF08990 Erythronolide synthase docking NIH92_12555 PF00550 Phosphopantetheine attachment site NIH92_12555 PF16197 Ketoacyl-synthetase C-terminal extension NIH92_12555 PF02801 Beta-ketoacyl synthase, C-terminal domain NIH92_12555 PF00109 Beta-ketoacyl synthase, N-terminal domain NIH92_12555 PF09277 Erythronolide synthase, docking NIH92_12555 PF08659 KR domain NIH92_12560 PF00440 Bacterial regulatory proteins, tetR family NIH92_12580 PF02678 Pirin NIH92_12580 PF17954 Quercetinase C-terminal cupin domain NIH92_12590 PF08348 YheO-like PAS domain NIH92_12590 PF13309 HTH domain NIH92_12600 PF00501 AMP-binding enzyme NIH92_12600 PF13193 AMP-binding enzyme C-terminal domain NIH92_12600 PF00668 Condensation domain NIH92_12600 PF00550 Phosphopantetheine attachment site NIH92_12605 PF00550 Phosphopantetheine attachment site NIH92_12605 PF00975 Thioesterase domain NIH92_12605 PF00501 AMP-binding enzyme NIH92_12605 PF13193 AMP-binding enzyme C-terminal domain NIH92_12605 PF00668 Condensation domain NIH92_12610 PF01032 FecCD transport family NIH92_12615 PF01032 FecCD transport family NIH92_12620 PF00005 ABC transporter NIH92_12625 PF01497 Periplasmic binding protein NIH92_12630 PF07715 TonB-dependent Receptor Plug Domain NIH92_12630 PF00593 TonB dependent receptor NIH92_12635 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIH92_12640 PF00501 AMP-binding enzyme NIH92_12640 PF00668 Condensation domain NIH92_12640 PF00550 Phosphopantetheine attachment site NIH92_12645 PF00501 AMP-binding enzyme NIH92_12645 PF13193 AMP-binding enzyme C-terminal domain NIH92_12650 PF00550 Phosphopantetheine attachment site NIH92_12650 PF00857 Isochorismatase family NIH92_12655 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIH92_12665 PF00005 ABC transporter NIH92_12670 PF00005 ABC transporter NIH92_12675 PF00975 Thioesterase domain NIH92_12685 PF00425 chorismate binding enzyme NIH92_12695 PF01208 Uroporphyrinogen decarboxylase (URO-D) NIH92_12700 PF05675 Protein of unknown function (DUF817) NIH92_12715 PF00144 Beta-lactamase NIH92_12725 PF01227 GTP cyclohydrolase I NIH92_12730 PF01799 [2Fe-2S] binding domain NIH92_12730 PF00111 2Fe-2S iron-sulfur cluster binding domain NIH92_12735 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NIH92_12735 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NIH92_12750 PF00218 Indole-3-glycerol phosphate synthase NIH92_12755 PF00591 Glycosyl transferase family, a/b domain NIH92_12755 PF02885 Glycosyl transferase family, helical bundle domain NIH92_12760 PF07715 TonB-dependent Receptor Plug Domain NIH92_12760 PF00593 TonB dependent receptor NIH92_12765 PF11838 ERAP1-like C-terminal domain NIH92_12765 PF01433 Peptidase family M1 domain NIH92_12770 PF00117 Glutamine amidotransferase class-I NIH92_12860 PF01555 DNA methylase NIH92_12890 PF01555 DNA methylase NIH92_13105 PF01476 LysM domain NIH92_13105 PF08525 Opacity-associated protein A N-terminal motif NIH92_13105 PF01551 Peptidase family M23 NIH92_13215 PF12161 HsdM N-terminal domain NIH92_13215 PF02384 N-6 DNA Methylase NIH92_13260 PF01695 IstB-like ATP binding protein NIH92_13420 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system NIH92_13475 PF13356 Arm DNA-binding domain NIH92_13475 PF00589 Phage integrase family NIH92_13485 PF00854 POT family NIH92_13490 PF00120 Glutamine synthetase, catalytic domain NIH92_13490 PF03951 Glutamine synthetase, beta-Grasp domain NIH92_13495 PF04345 Chorismate lyase NIH92_13500 PF01040 UbiA prenyltransferase family NIH92_13535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NIH92_13535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NIH92_13540 PF01784 NIF3 (NGG1p interacting factor 3) NIH92_13545 PF13180 PDZ domain NIH92_13550 PF01743 Poly A polymerase head domain NIH92_13550 PF12627 Probable RNA and SrmB- binding site of polymerase A NIH92_13555 PF00390 Malic enzyme, N-terminal domain NIH92_13555 PF01515 Phosphate acetyl/butaryl transferase NIH92_13555 PF03949 Malic enzyme, NAD binding domain NIH92_13560 PF03707 Bacterial signalling protein N terminal repeat NIH92_13560 PF00563 EAL domain NIH92_13560 PF00990 Diguanylate cyclase, GGDEF domain NIH92_13565 PF04452 RNA methyltransferase NIH92_13570 PF02219 Methylenetetrahydrofolate reductase NIH92_13575 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NIH92_13575 PF05221 S-adenosyl-L-homocysteine hydrolase NIH92_13590 PF09317 Domain of unknown function (DUF1974) NIH92_13590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_13590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_13595 PF04055 Radical SAM superfamily NIH92_13600 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_13600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIH92_13610 PF07690 Major Facilitator Superfamily NIH92_13620 PF00557 Metallopeptidase family M24 NIH92_13625 PF00318 Ribosomal protein S2 NIH92_13630 PF00889 Elongation factor TS NIH92_13640 PF12833 Helix-turn-helix domain NIH92_13660 PF03330 Lytic transglycolase NIH92_13660 PF05036 Sporulation related domain NIH92_13665 PF13406 Transglycosylase SLT domain NIH92_13670 PF01098 Cell cycle protein NIH92_13680 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NIH92_13680 PF14489 QueF-like protein NIH92_13685 PF01061 ABC-2 type transporter NIH92_13690 PF00005 ABC transporter NIH92_13720 PF00464 Serine hydroxymethyltransferase NIH92_13725 PF02321 Outer membrane efflux protein NIH92_13730 PF00873 AcrB/AcrD/AcrF family NIH92_13735 PF13533 Biotin-lipoyl like NIH92_13740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_13740 PF03466 LysR substrate binding domain NIH92_13745 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIH92_13750 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_13755 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_13760 PF00005 ABC transporter NIH92_13765 PF00893 Small Multidrug Resistance protein NIH92_13770 PF00037 4Fe-4S binding domain NIH92_13775 PF01136 Peptidase family U32 NIH92_13775 PF16325 Peptidase family U32 C-terminal domain NIH92_13780 PF00155 Aminotransferase class I and II NIH92_13780 PF00392 Bacterial regulatory proteins, gntR family NIH92_13785 PF02567 Phenazine biosynthesis-like protein NIH92_13790 PF00175 Oxidoreductase NAD-binding domain NIH92_13790 PF00970 Oxidoreductase FAD-binding domain NIH92_13795 PF01980 tRNA-methyltransferase O NIH92_13795 PF18389 TrmO C-terminal domain NIH92_13805 PF00437 Type II/IV secretion system protein NIH92_13805 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIH92_13815 PF00072 Response regulator receiver domain NIH92_13815 PF00486 Transcriptional regulatory protein, C terminal NIH92_13820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_13820 PF00512 His Kinase A (phospho-acceptor) domain NIH92_13820 PF08521 Two-component sensor kinase N-terminal NIH92_13830 PF00293 NUDIX domain NIH92_13840 PF00912 Transglycosylase NIH92_13840 PF00905 Penicillin binding protein transpeptidase domain NIH92_13840 PF14814 Bifunctional transglycosylase second domain NIH92_13845 PF01513 ATP-NAD kinase NIH92_13850 PF07023 Protein of unknown function (DUF1315) NIH92_13855 PF02885 Glycosyl transferase family, helical bundle domain NIH92_13855 PF00591 Glycosyl transferase family, a/b domain NIH92_13860 PF00375 Sodium:dicarboxylate symporter family NIH92_13865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_13865 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_13865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_13870 PF00756 Putative esterase NIH92_13875 PF00800 Prephenate dehydratase NIH92_13875 PF01817 Chorismate mutase type II NIH92_13875 PF01842 ACT domain NIH92_13880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIH92_13890 PF01546 Peptidase family M20/M25/M40 NIH92_13890 PF07687 Peptidase dimerisation domain NIH92_13895 PF12706 Beta-lactamase superfamily domain NIH92_13905 PF03883 Peroxide stress protein YaaA NIH92_13915 PF05690 Thiazole biosynthesis protein ThiG NIH92_13925 PF04241 Protein of unknown function (DUF423) NIH92_13930 PF00140 Sigma-70 factor, region 1.2 NIH92_13930 PF04545 Sigma-70, region 4 NIH92_13930 PF04542 Sigma-70 region 2 NIH92_13945 PF00313 'Cold-shock' DNA-binding domain NIH92_13950 PF00270 DEAD/DEAH box helicase NIH92_13950 PF00271 Helicase conserved C-terminal domain NIH92_13960 PF00881 Nitroreductase family NIH92_13965 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NIH92_13965 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NIH92_13985 PF01180 Dihydroorotate dehydrogenase NIH92_13990 PF02674 Colicin V production protein NIH92_13995 PF00156 Phosphoribosyl transferase domain NIH92_14010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIH92_14010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIH92_14015 PF01435 Peptidase family M48 NIH92_14020 PF09424 Yqey-like protein NIH92_14025 PF01165 Ribosomal protein S21 NIH92_14030 PF00814 Glycoprotease family NIH92_14050 PF00069 Protein kinase domain NIH92_14075 PF03466 LysR substrate binding domain NIH92_14075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_14080 PF00202 Aminotransferase class-III NIH92_14085 PF00171 Aldehyde dehydrogenase family NIH92_14090 PF00324 Amino acid permease NIH92_14120 PF04076 Bacterial OB fold (BOF) protein NIH92_14145 PF00561 alpha/beta hydrolase fold NIH92_14150 PF03616 Sodium/glutamate symporter NIH92_14160 PF00392 Bacterial regulatory proteins, gntR family NIH92_14160 PF07729 FCD domain NIH92_14180 PF13610 DDE domain NIH92_14195 PF16123 Hydroxyacylglutathione hydrolase C-terminus NIH92_14195 PF00753 Metallo-beta-lactamase superfamily NIH92_14200 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_14205 PF09383 NIL domain NIH92_14205 PF00005 ABC transporter NIH92_14210 PF03180 NLPA lipoprotein NIH92_14215 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NIH92_14215 PF02843 Phosphoribosylglycinamide synthetase, C domain NIH92_14215 PF02844 Phosphoribosylglycinamide synthetase, N domain NIH92_14220 PF01808 AICARFT/IMPCHase bienzyme NIH92_14220 PF02142 MGS-like domain NIH92_14225 PF02954 Bacterial regulatory protein, Fis family NIH92_14245 PF13932 GidA associated domain NIH92_14245 PF01134 Glucose inhibited division protein A NIH92_14255 PF14403 Circularly permuted ATP-grasp type 2 NIH92_14265 PF01841 Transglutaminase-like superfamily NIH92_14265 PF08379 Bacterial transglutaminase-like N-terminal region NIH92_14275 PF00842 Alanine racemase, C-terminal domain NIH92_14275 PF01168 Alanine racemase, N-terminal domain NIH92_14280 PF00772 DnaB-like helicase N terminal domain NIH92_14280 PF03796 DnaB-like helicase C terminal domain NIH92_14285 PF03948 Ribosomal protein L9, C-terminal domain NIH92_14285 PF01281 Ribosomal protein L9, N-terminal domain NIH92_14290 PF01084 Ribosomal protein S18 NIH92_14295 PF01250 Ribosomal protein S6 NIH92_14300 PF01040 UbiA prenyltransferase family NIH92_14305 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NIH92_14310 PF00510 Cytochrome c oxidase subunit III NIH92_14315 PF00115 Cytochrome C and Quinol oxidase polypeptide I NIH92_14320 PF06481 COX Aromatic Rich Motif NIH92_14320 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NIH92_14330 PF02896 PEP-utilising enzyme, TIM barrel domain NIH92_14330 PF00391 PEP-utilising enzyme, mobile domain NIH92_14330 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NIH92_14335 PF03618 Kinase/pyrophosphorylase NIH92_14345 PF01522 Polysaccharide deacetylase NIH92_14345 PF14883 Hypothetical glycosyl hydrolase family 13 NIH92_14350 PF00535 Glycosyl transferase family 2 NIH92_14365 PF00296 Luciferase-like monooxygenase NIH92_14380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_14380 PF03466 LysR substrate binding domain NIH92_14390 PF03462 PCRF domain NIH92_14390 PF00472 RF-1 domain NIH92_14395 PF13847 Methyltransferase domain NIH92_14395 PF17827 PrmC N-terminal domain NIH92_14400 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_14405 PF09084 NMT1/THI5 like NIH92_14410 PF12833 Helix-turn-helix domain NIH92_14415 PF00106 short chain dehydrogenase NIH92_14420 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_14420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_14420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_14425 PF13193 AMP-binding enzyme C-terminal domain NIH92_14425 PF00501 AMP-binding enzyme NIH92_14430 PF01613 Flavin reductase like domain NIH92_14435 PF00899 ThiF family NIH92_14440 PF03109 ABC1 family NIH92_14455 PF03814 Potassium-transporting ATPase A subunit NIH92_14465 PF02669 K+-transporting ATPase, c chain NIH92_14470 PF13493 Domain of unknown function (DUF4118) NIH92_14470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_14470 PF00512 His Kinase A (phospho-acceptor) domain NIH92_14470 PF02702 Osmosensitive K+ channel His kinase sensor domain NIH92_14475 PF00072 Response regulator receiver domain NIH92_14475 PF00486 Transcriptional regulatory protein, C terminal NIH92_14480 PF00120 Glutamine synthetase, catalytic domain NIH92_14490 PF03232 Ubiquinone biosynthesis protein COQ7 NIH92_14495 PF07690 Major Facilitator Superfamily NIH92_14500 PF07244 Surface antigen variable number repeat NIH92_14500 PF01103 Surface antigen NIH92_14500 PF17243 POTRA domain TamA domain 1 NIH92_14515 PF06434 Aconitate hydratase 2 N-terminus NIH92_14515 PF00330 Aconitase family (aconitate hydratase) NIH92_14515 PF11791 Aconitate B N-terminal domain NIH92_14525 PF00027 Cyclic nucleotide-binding domain NIH92_14525 PF00520 Ion transport protein NIH92_14530 PF07690 Major Facilitator Superfamily NIH92_14545 PF03466 LysR substrate binding domain NIH92_14545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_14550 PF04284 Protein of unknown function (DUF441) NIH92_14560 PF01479 S4 domain NIH92_14560 PF00849 RNA pseudouridylate synthase NIH92_14575 PF00849 RNA pseudouridylate synthase NIH92_14575 PF01479 S4 domain NIH92_14580 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NIH92_14585 PF01119 DNA mismatch repair protein, C-terminal domain NIH92_14585 PF08676 MutL C terminal dimerisation domain NIH92_14595 PF17209 Hfq protein NIH92_14605 PF00881 Nitroreductase family NIH92_14615 PF00149 Calcineurin-like phosphoesterase NIH92_14620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIH92_14625 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIH92_14625 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NIH92_14630 PF00117 Glutamine amidotransferase class-I NIH92_14630 PF02540 NAD synthase NIH92_14630 PF00958 GMP synthase C terminal domain NIH92_14635 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NIH92_14640 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NIH92_14645 PF13520 Amino acid permease NIH92_14650 PF00171 Aldehyde dehydrogenase family NIH92_14665 PF00465 Iron-containing alcohol dehydrogenase NIH92_14670 PF14493 Helix-turn-helix domain NIH92_14670 PF05970 PIF1-like helicase NIH92_14680 PF06445 GyrI-like small molecule binding domain NIH92_14685 PF02110 Hydroxyethylthiazole kinase family NIH92_14700 PF11940 Domain of unknown function (DUF3458) Ig-like fold NIH92_14700 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NIH92_14700 PF01433 Peptidase family M1 domain NIH92_14710 PF00106 short chain dehydrogenase NIH92_14720 PF01817 Chorismate mutase type II NIH92_14725 PF01037 Lrp/AsnC ligand binding domain NIH92_14740 PF00440 Bacterial regulatory proteins, tetR family NIH92_14745 PF07715 TonB-dependent Receptor Plug Domain NIH92_14745 PF00593 TonB dependent receptor NIH92_14750 PF00924 Mechanosensitive ion channel NIH92_14785 PF07715 TonB-dependent Receptor Plug Domain NIH92_14785 PF00593 TonB dependent receptor NIH92_14805 PF00005 ABC transporter NIH92_14805 PF12848 ABC transporter NIH92_14810 PF00582 Universal stress protein family NIH92_14835 PF00690 Cation transporter/ATPase, N-terminus NIH92_14835 PF00689 Cation transporting ATPase, C-terminus NIH92_14840 PF02308 MgtC family NIH92_14845 PF03594 Benzoate membrane transport protein NIH92_14850 PF01037 Lrp/AsnC ligand binding domain NIH92_14855 PF01810 LysE type translocator NIH92_14860 PF00923 Transaldolase/Fructose-6-phosphate aldolase NIH92_14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_14865 PF03466 LysR substrate binding domain NIH92_14875 PF00108 Thiolase, N-terminal domain NIH92_14875 PF02803 Thiolase, C-terminal domain NIH92_14885 PF01575 MaoC like domain NIH92_14890 PF00144 Beta-lactamase NIH92_14900 PF07690 Major Facilitator Superfamily NIH92_14905 PF12169 DNA polymerase III subunits gamma and tau domain III NIH92_14905 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NIH92_14905 PF12170 DNA polymerase III tau subunit V interacting with alpha NIH92_14910 PF04185 Phosphoesterase family NIH92_14910 PF05506 Domain of unknown function (DUF756) NIH92_14915 PF03061 Thioesterase superfamily NIH92_14920 PF00465 Iron-containing alcohol dehydrogenase NIH92_14930 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIH92_14935 PF01565 FAD binding domain NIH92_14935 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NIH92_14950 PF01645 Conserved region in glutamate synthase NIH92_14970 PF12832 MFS_1 like family NIH92_14980 PF02785 Biotin carboxylase C-terminal domain NIH92_14980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIH92_14980 PF00289 Biotin carboxylase, N-terminal domain NIH92_14985 PF00364 Biotin-requiring enzyme NIH92_14990 PF01220 Dehydroquinase class II NIH92_14995 PF00817 impB/mucB/samB family NIH92_14995 PF13438 Domain of unknown function (DUF4113) NIH92_14995 PF11799 impB/mucB/samB family C-terminal domain NIH92_15005 PF00005 ABC transporter NIH92_15010 PF00072 Response regulator receiver domain NIH92_15010 PF00486 Transcriptional regulatory protein, C terminal NIH92_15020 PF04324 BFD-like [2Fe-2S] binding domain NIH92_15020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIH92_15020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_15020 PF13806 Rieske-like [2Fe-2S] domain NIH92_15020 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIH92_15020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIH92_15025 PF04324 BFD-like [2Fe-2S] binding domain NIH92_15025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIH92_15025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIH92_15025 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_15025 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIH92_15030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIH92_15030 PF04324 BFD-like [2Fe-2S] binding domain NIH92_15030 PF00384 Molybdopterin oxidoreductase NIH92_15030 PF01568 Molydopterin dinucleotide binding domain NIH92_15035 PF12804 MobA-like NTP transferase domain NIH92_15040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIH92_15040 PF00384 Molybdopterin oxidoreductase NIH92_15040 PF01568 Molydopterin dinucleotide binding domain NIH92_15045 PF06463 Molybdenum Cofactor Synthesis C NIH92_15045 PF04055 Radical SAM superfamily NIH92_15055 PF02391 MoaE protein NIH92_15060 PF01967 MoaC family NIH92_15060 PF00994 Probable molybdopterin binding domain NIH92_15065 PF00994 Probable molybdopterin binding domain NIH92_15065 PF03453 MoeA N-terminal region (domain I and II) NIH92_15065 PF03454 MoeA C-terminal region (domain IV) NIH92_15070 PF01638 HxlR-like helix-turn-helix NIH92_15075 PF00155 Aminotransferase class I and II NIH92_15075 PF00392 Bacterial regulatory proteins, gntR family NIH92_15080 PF00892 EamA-like transporter family NIH92_15100 PF02635 DsrE/DsrF-like family NIH92_15105 PF16363 GDP-mannose 4,6 dehydratase NIH92_15110 PF10415 Fumarase C C-terminus NIH92_15110 PF00206 Lyase NIH92_15130 PF01266 FAD dependent oxidoreductase NIH92_15140 PF02542 YgbB family NIH92_15150 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIH92_15150 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIH92_15155 PF00440 Bacterial regulatory proteins, tetR family NIH92_15160 PF02954 Bacterial regulatory protein, Fis family NIH92_15160 PF00072 Response regulator receiver domain NIH92_15160 PF00158 Sigma-54 interaction domain NIH92_15165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_15165 PF00989 PAS fold NIH92_15165 PF00512 His Kinase A (phospho-acceptor) domain NIH92_15170 PF00919 Uncharacterized protein family UPF0004 NIH92_15170 PF04055 Radical SAM superfamily NIH92_15170 PF18693 TRAM domain NIH92_15175 PF00696 Amino acid kinase family NIH92_15180 PF01765 Ribosome recycling factor NIH92_15185 PF01255 Putative undecaprenyl diphosphate synthase NIH92_15195 PF13288 DXP reductoisomerase C-terminal domain NIH92_15195 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NIH92_15195 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NIH92_15200 PF13180 PDZ domain NIH92_15200 PF17820 PDZ domain NIH92_15200 PF02163 Peptidase family M50 NIH92_15205 PF01103 Surface antigen NIH92_15205 PF07244 Surface antigen variable number repeat NIH92_15215 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_15215 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NIH92_15220 PF07977 FabA-like domain NIH92_15225 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NIH92_15225 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_15240 PF02631 RecX family NIH92_15245 PF00154 recA bacterial DNA recombination protein NIH92_15250 PF01479 S4 domain NIH92_15255 PF13419 Haloacid dehalogenase-like hydrolase NIH92_15280 PF01037 Lrp/AsnC ligand binding domain NIH92_15285 PF00266 Aminotransferase class-V NIH92_15290 PF00324 Amino acid permease NIH92_15305 PF05922 Peptidase inhibitor I9 NIH92_15305 PF00082 Subtilase family NIH92_15310 PF00916 Sulfate permease family NIH92_15310 PF01740 STAS domain NIH92_15315 PF02586 SOS response associated peptidase (SRAP) NIH92_15320 PF07995 Glucose / Sorbosone dehydrogenase NIH92_15330 PF00990 Diguanylate cyclase, GGDEF domain NIH92_15330 PF03707 Bacterial signalling protein N terminal repeat NIH92_15330 PF00563 EAL domain NIH92_15350 PF02378 Phosphotransferase system, EIIC NIH92_15350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NIH92_15355 PF00294 pfkB family carbohydrate kinase NIH92_15360 PF05524 PEP-utilising enzyme, N-terminal NIH92_15360 PF00391 PEP-utilising enzyme, mobile domain NIH92_15360 PF02896 PEP-utilising enzyme, TIM barrel domain NIH92_15360 PF00381 PTS HPr component phosphorylation site NIH92_15360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NIH92_15385 PF05525 Branched-chain amino acid transport protein NIH92_15390 PF00557 Metallopeptidase family M24 NIH92_15395 PF03466 LysR substrate binding domain NIH92_15395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_15405 PF00462 Glutaredoxin NIH92_15410 PF00202 Aminotransferase class-III NIH92_15415 PF00571 CBS domain NIH92_15415 PF00478 IMP dehydrogenase / GMP reductase domain NIH92_15440 PF00448 SRP54-type protein, GTPase domain NIH92_15440 PF02881 SRP54-type protein, helical bundle domain NIH92_15450 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NIH92_15465 PF08173 Membrane bound YbgT-like protein NIH92_15470 PF02322 Cytochrome bd terminal oxidase subunit II NIH92_15475 PF01654 Cytochrome bd terminal oxidase subunit I NIH92_15485 PF13737 Transposase DDE domain NIH92_15490 PF07290 Protein of unknown function (DUF1449) NIH92_15500 PF00294 pfkB family carbohydrate kinase NIH92_15505 PF07715 TonB-dependent Receptor Plug Domain NIH92_15505 PF00593 TonB dependent receptor NIH92_15510 PF08367 Peptidase M16C associated NIH92_15510 PF00675 Insulinase (Peptidase family M16) NIH92_15510 PF05193 Peptidase M16 inactive domain NIH92_15515 PF02253 Phospholipase A1 NIH92_15520 PF02386 Cation transport protein NIH92_15525 PF02080 TrkA-C domain NIH92_15525 PF02254 TrkA-N domain NIH92_15530 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_15530 PF00585 C-terminal regulatory domain of Threonine dehydratase NIH92_15535 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NIH92_15550 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIH92_15550 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIH92_15560 PF02617 ATP-dependent Clp protease adaptor protein ClpS NIH92_15565 PF10431 C-terminal, D2-small domain, of ClpB protein NIH92_15565 PF02861 Clp amino terminal domain, pathogenicity island component NIH92_15565 PF17871 AAA lid domain NIH92_15565 PF00004 ATPase family associated with various cellular activities (AAA) NIH92_15565 PF07724 AAA domain (Cdc48 subfamily) NIH92_15570 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NIH92_15575 PF00793 DAHP synthetase I family NIH92_15590 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_15590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIH92_15620 PF06418 CTP synthase N-terminus NIH92_15620 PF00117 Glutamine amidotransferase class-I NIH92_15625 PF00793 DAHP synthetase I family NIH92_15630 PF00113 Enolase, C-terminal TIM barrel domain NIH92_15630 PF03952 Enolase, N-terminal domain NIH92_15635 PF04239 Protein of unknown function (DUF421) NIH92_15640 PF04977 Septum formation initiator NIH92_15645 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NIH92_15650 PF01144 Coenzyme A transferase NIH92_15655 PF01144 Coenzyme A transferase NIH92_15660 PF02803 Thiolase, C-terminal domain NIH92_15660 PF00108 Thiolase, N-terminal domain NIH92_15665 PF10397 Adenylosuccinate lyase C-terminus NIH92_15665 PF00206 Lyase NIH92_15670 PF00561 alpha/beta hydrolase fold NIH92_15675 PF07690 Major Facilitator Superfamily NIH92_15680 PF02627 Carboxymuconolactone decarboxylase family NIH92_15685 PF00775 Dioxygenase NIH92_15685 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NIH92_15690 PF00775 Dioxygenase NIH92_15695 PF01487 Type I 3-dehydroquinase NIH92_15700 PF05048 Periplasmic copper-binding protein (NosD) NIH92_15705 PF04966 Carbohydrate-selective porin, OprB family NIH92_15710 PF13360 PQQ-like domain NIH92_15710 PF01011 PQQ enzyme repeat NIH92_15720 PF04143 Sulphur transport NIH92_15730 PF00753 Metallo-beta-lactamase superfamily NIH92_15735 PF09339 IclR helix-turn-helix domain NIH92_15735 PF01614 Bacterial transcriptional regulator NIH92_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_15740 PF03466 LysR substrate binding domain NIH92_15745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_15745 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_15745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_15760 PF00106 short chain dehydrogenase NIH92_15770 PF07690 Major Facilitator Superfamily NIH92_15780 PF01425 Amidase NIH92_15785 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIH92_15800 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIH92_15800 PF00355 Rieske [2Fe-2S] domain NIH92_15815 PF00175 Oxidoreductase NAD-binding domain NIH92_15815 PF00111 2Fe-2S iron-sulfur cluster binding domain NIH92_15820 PF01613 Flavin reductase like domain NIH92_15825 PF02311 AraC-like ligand binding domain NIH92_15825 PF12833 Helix-turn-helix domain NIH92_15830 PF01179 Copper amine oxidase, enzyme domain NIH92_15830 PF07833 Copper amine oxidase N-terminal domain NIH92_15830 PF02727 Copper amine oxidase, N2 domain NIH92_15830 PF02728 Copper amine oxidase, N3 domain NIH92_15840 PF00171 Aldehyde dehydrogenase family NIH92_15845 PF01804 Penicillin amidase NIH92_15850 PF12146 Serine aminopeptidase, S33 NIH92_15855 PF00108 Thiolase, N-terminal domain NIH92_15855 PF02803 Thiolase, C-terminal domain NIH92_15860 PF01144 Coenzyme A transferase NIH92_15865 PF01144 Coenzyme A transferase NIH92_15870 PF04444 Catechol dioxygenase N terminus NIH92_15870 PF00775 Dioxygenase NIH92_15875 PF02426 Muconolactone delta-isomerase NIH92_15880 PF13378 Enolase C-terminal domain-like NIH92_15880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIH92_15885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_15885 PF03466 LysR substrate binding domain NIH92_15895 PF07729 FCD domain NIH92_15895 PF00392 Bacterial regulatory proteins, gntR family NIH92_15900 PF00920 Dehydratase family NIH92_15905 PF07690 Major Facilitator Superfamily NIH92_15915 PF00171 Aldehyde dehydrogenase family NIH92_15935 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_15935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_15935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_15945 PF02954 Bacterial regulatory protein, Fis family NIH92_15945 PF06506 Propionate catabolism activator NIH92_15945 PF00158 Sigma-54 interaction domain NIH92_15950 PF00501 AMP-binding enzyme NIH92_15950 PF13193 AMP-binding enzyme C-terminal domain NIH92_15955 PF04341 Protein of unknown function, DUF485 NIH92_15960 PF00474 Sodium:solute symporter family NIH92_15965 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_15965 PF00107 Zinc-binding dehydrogenase NIH92_15970 PF00171 Aldehyde dehydrogenase family NIH92_15980 PF00561 alpha/beta hydrolase fold NIH92_15985 PF00199 Catalase NIH92_15985 PF06628 Catalase-related immune-responsive NIH92_16000 PF07859 alpha/beta hydrolase fold NIH92_16005 PF01047 MarR family NIH92_16010 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_16010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIH92_16015 PF00106 short chain dehydrogenase NIH92_16020 PF01872 RibD C-terminal domain NIH92_16025 PF09278 MerR, DNA binding NIH92_16025 PF00376 MerR family regulatory protein NIH92_16035 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_16045 PF12706 Beta-lactamase superfamily domain NIH92_16050 PF00440 Bacterial regulatory proteins, tetR family NIH92_16050 PF08359 YsiA-like protein, C-terminal region NIH92_16060 PF00857 Isochorismatase family NIH92_16065 PF03466 LysR substrate binding domain NIH92_16065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_16070 PF07995 Glucose / Sorbosone dehydrogenase NIH92_16075 PF02254 TrkA-N domain NIH92_16075 PF00999 Sodium/hydrogen exchanger family NIH92_16085 PF01546 Peptidase family M20/M25/M40 NIH92_16085 PF07687 Peptidase dimerisation domain NIH92_16095 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NIH92_16095 PF08479 POTRA domain, ShlB-type NIH92_16095 PF17287 POTRA domain NIH92_16100 PF04829 Pre-toxin domain with VENN motif NIH92_16100 PF05860 haemagglutination activity domain NIH92_16100 PF13332 Hemagglutinin repeat NIH92_16100 PF13018 Extended Signal Peptide of Type V secretion system NIH92_16115 PF07690 Major Facilitator Superfamily NIH92_16120 PF04909 Amidohydrolase NIH92_16130 PF00392 Bacterial regulatory proteins, gntR family NIH92_16130 PF07702 UTRA domain NIH92_16135 PF08450 SMP-30/Gluconolactonase/LRE-like region NIH92_16145 PF03466 LysR substrate binding domain NIH92_16145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_16165 PF07690 Major Facilitator Superfamily NIH92_16170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIH92_16170 PF01842 ACT domain NIH92_16170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIH92_16175 PF03737 Aldolase/RraA NIH92_16205 PF00529 HlyD membrane-fusion protein of T1SS NIH92_16205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIH92_16220 PF00171 Aldehyde dehydrogenase family NIH92_16225 PF00920 Dehydratase family NIH92_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_16235 PF03466 LysR substrate binding domain NIH92_16240 PF01370 NAD dependent epimerase/dehydratase family NIH92_16245 PF07690 Major Facilitator Superfamily NIH92_16250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIH92_16250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIH92_16255 PF12833 Helix-turn-helix domain NIH92_16255 PF06719 AraC-type transcriptional regulator N-terminus NIH92_16270 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_16270 PF00107 Zinc-binding dehydrogenase NIH92_16280 PF01032 FecCD transport family NIH92_16285 PF00005 ABC transporter NIH92_16305 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIH92_16305 PF14572 Phosphoribosyl synthetase-associated domain NIH92_16310 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIH92_16385 PF00196 Bacterial regulatory proteins, luxR family NIH92_16390 PF01425 Amidase NIH92_16395 PF13533 Biotin-lipoyl like NIH92_16400 PF07690 Major Facilitator Superfamily NIH92_16425 PF01975 Survival protein SurE NIH92_16435 PF04607 Region found in RelA / SpoT proteins NIH92_16435 PF13291 ACT domain NIH92_16435 PF02824 TGS domain NIH92_16485 PF12146 Serine aminopeptidase, S33 NIH92_16490 PF02311 AraC-like ligand binding domain NIH92_16490 PF12833 Helix-turn-helix domain NIH92_16500 PF16527 Two-component sensor protein CpxA, periplasmic domain NIH92_16500 PF00672 HAMP domain NIH92_16500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_16500 PF00512 His Kinase A (phospho-acceptor) domain NIH92_16505 PF00072 Response regulator receiver domain NIH92_16505 PF00486 Transcriptional regulatory protein, C terminal NIH92_16510 PF00529 HlyD membrane-fusion protein of T1SS NIH92_16510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIH92_16515 PF00873 AcrB/AcrD/AcrF family NIH92_16520 PF02321 Outer membrane efflux protein NIH92_16525 PF12146 Serine aminopeptidase, S33 NIH92_16530 PF00743 Flavin-binding monooxygenase-like NIH92_16535 PF01593 Flavin containing amine oxidoreductase NIH92_16550 PF01266 FAD dependent oxidoreductase NIH92_16570 PF16970 Type-1 fimbrial protein, A NIH92_16580 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIH92_16580 PF02753 Pili assembly chaperone PapD, C-terminal domain NIH92_16585 PF13954 PapC N-terminal domain NIH92_16585 PF00577 Outer membrane usher protein NIH92_16585 PF13953 PapC C-terminal domain NIH92_16590 PF00419 Fimbrial protein NIH92_16600 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_16600 PF00107 Zinc-binding dehydrogenase NIH92_16610 PF00199 Catalase NIH92_16625 PF13091 PLD-like domain NIH92_16640 PF01244 Membrane dipeptidase (Peptidase family M19) NIH92_16645 PF04055 Radical SAM superfamily NIH92_16645 PF13186 Iron-sulfur cluster-binding domain NIH92_16650 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NIH92_16655 PF03070 TENA/THI-4/PQQC family NIH92_16660 PF12706 Beta-lactamase superfamily domain NIH92_16665 PF08042 PqqA family NIH92_16670 PF13089 Polyphosphate kinase N-terminal domain NIH92_16670 PF17941 Polyphosphate kinase C-terminal domain 1 NIH92_16670 PF13090 Polyphosphate kinase C-terminal domain 2 NIH92_16670 PF02503 Polyphosphate kinase middle domain NIH92_16675 PF00149 Calcineurin-like phosphoesterase NIH92_16685 PF00550 Phosphopantetheine attachment site NIH92_16685 PF00857 Isochorismatase family NIH92_16690 PF00106 short chain dehydrogenase NIH92_16695 PF00005 ABC transporter NIH92_16695 PF03459 TOBE domain NIH92_16700 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_16710 PF03459 TOBE domain NIH92_16715 PF00355 Rieske [2Fe-2S] domain NIH92_16715 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIH92_16720 PF00866 Ring hydroxylating beta subunit NIH92_16725 PF00970 Oxidoreductase FAD-binding domain NIH92_16725 PF00175 Oxidoreductase NAD-binding domain NIH92_16725 PF00111 2Fe-2S iron-sulfur cluster binding domain NIH92_16730 PF14525 AraC-binding-like domain NIH92_16730 PF12833 Helix-turn-helix domain NIH92_16740 PF01613 Flavin reductase like domain NIH92_16755 PF01738 Dienelactone hydrolase family NIH92_16760 PF07690 Major Facilitator Superfamily NIH92_16765 PF12833 Helix-turn-helix domain NIH92_16765 PF06719 AraC-type transcriptional regulator N-terminus NIH92_16790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_16790 PF03466 LysR substrate binding domain NIH92_16795 PF01144 Coenzyme A transferase NIH92_16800 PF01144 Coenzyme A transferase NIH92_16805 PF02667 Short chain fatty acid transporter NIH92_16810 PF02803 Thiolase, C-terminal domain NIH92_16810 PF00108 Thiolase, N-terminal domain NIH92_16815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_16815 PF03466 LysR substrate binding domain NIH92_16820 PF03466 LysR substrate binding domain NIH92_16820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_16835 PF00206 Lyase NIH92_16835 PF10415 Fumarase C C-terminus NIH92_16840 PF00593 TonB dependent receptor NIH92_16840 PF07715 TonB-dependent Receptor Plug Domain NIH92_16845 PF00083 Sugar (and other) transporter NIH92_16860 PF00005 ABC transporter NIH92_16865 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_16870 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIH92_16885 PF07702 UTRA domain NIH92_16885 PF00392 Bacterial regulatory proteins, gntR family NIH92_16895 PF02525 Flavodoxin-like fold NIH92_16900 PF01638 HxlR-like helix-turn-helix NIH92_16905 PF06445 GyrI-like small molecule binding domain NIH92_16905 PF12833 Helix-turn-helix domain NIH92_16920 PF01925 Sulfite exporter TauE/SafE NIH92_16935 PF04273 Putative phosphatase (DUF442) NIH92_16935 PF00753 Metallo-beta-lactamase superfamily NIH92_16940 PF00158 Sigma-54 interaction domain NIH92_16940 PF02954 Bacterial regulatory protein, Fis family NIH92_16940 PF00072 Response regulator receiver domain NIH92_16945 PF01062 Bestrophin, RFP-TM, chloride channel NIH92_16950 PF08240 Alcohol dehydrogenase GroES-like domain NIH92_16950 PF00107 Zinc-binding dehydrogenase NIH92_16955 PF00106 short chain dehydrogenase NIH92_16960 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_16960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIH92_16965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIH92_16965 PF00364 Biotin-requiring enzyme NIH92_16965 PF02817 e3 binding domain NIH92_16970 PF02780 Transketolase, C-terminal domain NIH92_16970 PF02779 Transketolase, pyrimidine binding domain NIH92_16975 PF00676 Dehydrogenase E1 component NIH92_16980 PF04055 Radical SAM superfamily NIH92_16995 PF00990 Diguanylate cyclase, GGDEF domain NIH92_16995 PF08448 PAS fold NIH92_17000 PF01264 Chorismate synthase NIH92_17005 PF05175 Methyltransferase small domain NIH92_17010 PF00291 Pyridoxal-phosphate dependent enzyme NIH92_17020 PF01434 Peptidase family M41 NIH92_17020 PF00004 ATPase family associated with various cellular activities (AAA) NIH92_17020 PF17862 AAA+ lid domain NIH92_17030 PF05166 YcgL domain NIH92_17050 PF01612 3'-5' exonuclease NIH92_17050 PF00570 HRDC domain NIH92_17055 PF02132 RecR protein NIH92_17055 PF13662 Toprim domain NIH92_17060 PF02575 YbaB/EbfC DNA-binding family NIH92_17070 PF01053 Cys/Met metabolism PLP-dependent enzyme NIH92_17075 PF00561 alpha/beta hydrolase fold NIH92_17080 PF08241 Methyltransferase domain NIH92_17110 PF01230 HIT domain NIH92_17145 PF00005 ABC transporter NIH92_17150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIH92_17160 PF02684 Lipid-A-disaccharide synthetase NIH92_17165 PF00593 TonB dependent receptor NIH92_17165 PF07715 TonB-dependent Receptor Plug Domain NIH92_17185 PF01925 Sulfite exporter TauE/SafE NIH92_17190 PF00793 DAHP synthetase I family NIH92_17195 PF02654 Cobalamin-5-phosphate synthase NIH92_17210 PF02277 Phosphoribosyltransferase NIH92_17215 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NIH92_17225 PF13419 Haloacid dehalogenase-like hydrolase NIH92_17250 PF07715 TonB-dependent Receptor Plug Domain NIH92_17250 PF00593 TonB dependent receptor NIH92_17265 PF06276 Ferric iron reductase FhuF-like transporter NIH92_17265 PF04183 IucA / IucC family NIH92_17270 PF06276 Ferric iron reductase FhuF-like transporter NIH92_17270 PF04183 IucA / IucC family NIH92_17275 PF07690 Major Facilitator Superfamily NIH92_17280 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIH92_17285 PF06276 Ferric iron reductase FhuF-like transporter NIH92_17285 PF04183 IucA / IucC family NIH92_17290 PF04073 Aminoacyl-tRNA editing domain NIH92_17300 PF03109 ABC1 family NIH92_17305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_17305 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_17305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_17310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_17310 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_17310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_17315 PF00487 Fatty acid desaturase NIH92_17320 PF12852 Cupin NIH92_17320 PF12833 Helix-turn-helix domain NIH92_17325 PF00639 PPIC-type PPIASE domain NIH92_17325 PF09312 SurA N-terminal domain NIH92_17330 PF00216 Bacterial DNA-binding protein NIH92_17345 PF02082 Transcriptional regulator NIH92_17350 PF00266 Aminotransferase class-V NIH92_17355 PF01592 NifU-like N terminal domain NIH92_17360 PF01521 Iron-sulphur cluster biosynthesis NIH92_17365 PF00226 DnaJ domain NIH92_17365 PF07743 HSCB C-terminal oligomerisation domain NIH92_17370 PF00012 Hsp70 protein NIH92_17375 PF00111 2Fe-2S iron-sulfur cluster binding domain NIH92_17380 PF00211 Adenylate and Guanylate cyclase catalytic domain NIH92_17390 PF02559 CarD-like/TRCF domain NIH92_17390 PF00270 DEAD/DEAH box helicase NIH92_17390 PF17757 UvrB interaction domain NIH92_17390 PF03461 TRCF domain NIH92_17390 PF00271 Helicase conserved C-terminal domain NIH92_17410 PF03737 Aldolase/RraA NIH92_17415 PF13460 NAD(P)H-binding NIH92_17420 PF01649 Ribosomal protein S20 NIH92_17445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIH92_17445 PF00005 ABC transporter NIH92_17450 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_17455 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_17460 PF01432 Peptidase family M3 NIH92_17490 PF01618 MotA/TolQ/ExbB proton channel family NIH92_17495 PF02472 Biopolymer transport protein ExbD/TolR NIH92_17500 PF02472 Biopolymer transport protein ExbD/TolR NIH92_17510 PF01274 Malate synthase NIH92_17515 PF03969 AFG1-like ATPase NIH92_17525 PF00743 Flavin-binding monooxygenase-like NIH92_17535 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NIH92_17545 PF00216 Bacterial DNA-binding protein NIH92_17550 PF00575 S1 RNA binding domain NIH92_17555 PF02224 Cytidylate kinase NIH92_17565 PF14437 MafB19-like deaminase NIH92_17575 PF03167 Uracil DNA glycosylase superfamily NIH92_17585 PF03934 Type II secretion system (T2SS), protein K NIH92_17590 PF11612 Type II secretion system (T2SS), protein J NIH92_17590 PF07963 Prokaryotic N-terminal methylation motif NIH92_17595 PF02501 Type II secretion system (T2SS), protein I NIH92_17595 PF07963 Prokaryotic N-terminal methylation motif NIH92_17610 PF01026 TatD related DNase NIH92_17620 PF09115 DNA polymerase III, delta subunit, C terminal NIH92_17625 PF02348 Cytidylyltransferase NIH92_17630 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NIH92_17635 PF00664 ABC transporter transmembrane region NIH92_17635 PF00005 ABC transporter NIH92_17645 PF01618 MotA/TolQ/ExbB proton channel family NIH92_17650 PF17762 HTH domain found in ParB protein NIH92_17650 PF02195 ParB-like nuclease domain NIH92_17655 PF13614 AAA domain NIH92_17660 PF02527 rRNA small subunit methyltransferase G NIH92_17665 PF00483 Nucleotidyl transferase NIH92_17670 PF01636 Phosphotransferase enzyme family NIH92_17675 PF03968 OstA-like protein NIH92_17675 PF04453 LPS transport system D NIH92_17680 PF00639 PPIC-type PPIASE domain NIH92_17680 PF09312 SurA N-terminal domain NIH92_17685 PF01116 Fructose-bisphosphate aldolase class-II NIH92_17695 PF00162 Phosphoglycerate kinase NIH92_17705 PF02545 Maf-like protein NIH92_17710 PF08007 Cupin superfamily protein NIH92_17725 PF00375 Sodium:dicarboxylate symporter family NIH92_17730 PF06912 Protein of unknown function (DUF1275) NIH92_17735 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NIH92_17740 PF00664 ABC transporter transmembrane region NIH92_17740 PF00005 ABC transporter NIH92_17750 PF12833 Helix-turn-helix domain NIH92_17750 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIH92_17755 PF01597 Glycine cleavage H-protein NIH92_17760 PF02146 Sir2 family NIH92_17765 PF00474 Sodium:solute symporter family NIH92_17770 PF01037 Lrp/AsnC ligand binding domain NIH92_17775 PF01619 Proline dehydrogenase NIH92_17775 PF14850 DNA-binding domain of Proline dehydrogenase NIH92_17775 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NIH92_17775 PF00171 Aldehyde dehydrogenase family NIH92_17780 PF04229 GrpB protein NIH92_17785 PF05958 tRNA (Uracil-5-)-methyltransferase NIH92_17795 PF09992 Phosphodiester glycosidase NIH92_17805 PF04264 YceI-like domain NIH92_17815 PF00456 Transketolase, thiamine diphosphate binding domain NIH92_17815 PF02779 Transketolase, pyrimidine binding domain NIH92_17815 PF02780 Transketolase, C-terminal domain NIH92_17820 PF02773 S-adenosylmethionine synthetase, C-terminal domain NIH92_17820 PF00438 S-adenosylmethionine synthetase, N-terminal domain NIH92_17820 PF02772 S-adenosylmethionine synthetase, central domain NIH92_17840 PF00905 Penicillin binding protein transpeptidase domain NIH92_17855 PF02075 Crossover junction endodeoxyribonuclease RuvC NIH92_17860 PF01256 Carbohydrate kinase NIH92_17860 PF03853 YjeF-related protein N-terminus NIH92_17865 PF08331 Domain of unknown function (DUF1730) NIH92_17870 PF06968 Biotin and Thiamin Synthesis associated domain NIH92_17870 PF04055 Radical SAM superfamily NIH92_17885 PF16970 Type-1 fimbrial protein, A NIH92_17890 PF02753 Pili assembly chaperone PapD, C-terminal domain NIH92_17890 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIH92_17895 PF00577 Outer membrane usher protein NIH92_17895 PF13954 PapC N-terminal domain NIH92_17895 PF13953 PapC C-terminal domain NIH92_17915 PF00892 EamA-like transporter family NIH92_17925 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIH92_17935 PF03466 LysR substrate binding domain NIH92_17935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_17955 PF00440 Bacterial regulatory proteins, tetR family NIH92_17965 PF01709 Transcriptional regulator NIH92_17975 PF01037 Lrp/AsnC ligand binding domain NIH92_17985 PF00005 ABC transporter NIH92_17990 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_17995 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_18010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_18010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIH92_18020 PF00296 Luciferase-like monooxygenase NIH92_18025 PF03180 NLPA lipoprotein NIH92_18030 PF03180 NLPA lipoprotein NIH92_18035 PF00005 ABC transporter NIH92_18035 PF09383 NIL domain NIH92_18040 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_18045 PF01926 50S ribosome-binding GTPase NIH92_18045 PF06071 Protein of unknown function (DUF933) NIH92_18070 PF03591 AzlC protein NIH92_18075 PF05437 Branched-chain amino acid transport protein (AzlD) NIH92_18085 PF02222 ATP-grasp domain NIH92_18090 PF08335 GlnD PII-uridylyltransferase NIH92_18090 PF01966 HD domain NIH92_18090 PF01909 Nucleotidyltransferase domain NIH92_18095 PF00155 Aminotransferase class I and II NIH92_18105 PF12852 Cupin NIH92_18105 PF12833 Helix-turn-helix domain NIH92_18110 PF00255 Glutathione peroxidase NIH92_18115 PF01641 SelR domain NIH92_18120 PF00155 Aminotransferase class I and II NIH92_18125 PF00375 Sodium:dicarboxylate symporter family NIH92_18130 PF00710 Asparaginase, N-terminal NIH92_18130 PF17763 Glutaminase/Asparaginase C-terminal domain NIH92_18135 PF01336 OB-fold nucleic acid binding domain NIH92_18135 PF02811 PHP domain NIH92_18135 PF07733 Bacterial DNA polymerase III alpha NTPase domain NIH92_18135 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NIH92_18135 PF14579 Helix-hairpin-helix motif NIH92_18140 PF00588 SpoU rRNA Methylase family NIH92_18145 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_18160 PF13192 Thioredoxin domain NIH92_18160 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIH92_18175 PF03466 LysR substrate binding domain NIH92_18175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18180 PF01758 Sodium Bile acid symporter family NIH92_18185 PF01022 Bacterial regulatory protein, arsR family NIH92_18190 PF03960 ArsC family NIH92_18200 PF13382 Adenine deaminase C-terminal domain NIH92_18200 PF01979 Amidohydrolase family NIH92_18210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18210 PF03466 LysR substrate binding domain NIH92_18220 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIH92_18225 PF01177 Asp/Glu/Hydantoin racemase NIH92_18230 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NIH92_18235 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_18240 PF00005 ABC transporter NIH92_18245 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIH92_18255 PF00083 Sugar (and other) transporter NIH92_18260 PF00296 Luciferase-like monooxygenase NIH92_18265 PF13737 Transposase DDE domain NIH92_18270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_18270 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_18270 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIH92_18280 PF01654 Cytochrome bd terminal oxidase subunit I NIH92_18285 PF02322 Cytochrome bd terminal oxidase subunit II NIH92_18295 PF00392 Bacterial regulatory proteins, gntR family NIH92_18295 PF00155 Aminotransferase class I and II NIH92_18300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18300 PF03466 LysR substrate binding domain NIH92_18315 PF00698 Acyl transferase domain NIH92_18320 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NIH92_18330 PF01039 Carboxyl transferase domain NIH92_18335 PF06857 Malonate decarboxylase delta subunit (MdcD) NIH92_18340 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NIH92_18345 PF16957 Malonate decarboxylase, alpha subunit, transporter NIH92_18350 PF07690 Major Facilitator Superfamily NIH92_18365 PF00155 Aminotransferase class I and II NIH92_18365 PF00392 Bacterial regulatory proteins, gntR family NIH92_18370 PF04172 LrgB-like family NIH92_18375 PF03788 LrgA family NIH92_18380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18380 PF03466 LysR substrate binding domain NIH92_18385 PF14834 Glutathione S-transferase, C-terminal domain NIH92_18385 PF02798 Glutathione S-transferase, N-terminal domain NIH92_18390 PF02798 Glutathione S-transferase, N-terminal domain NIH92_18395 PF03466 LysR substrate binding domain NIH92_18395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18405 PF00581 Rhodanese-like domain NIH92_18410 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_18420 PF00266 Aminotransferase class-V NIH92_18430 PF01810 LysE type translocator NIH92_18435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18435 PF03466 LysR substrate binding domain NIH92_18445 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIH92_18450 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIH92_18455 PF00005 ABC transporter NIH92_18460 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_18465 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_18480 PF00072 Response regulator receiver domain NIH92_18485 PF09308 LuxQ, periplasmic NIH92_18485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIH92_18485 PF00512 His Kinase A (phospho-acceptor) domain NIH92_18485 PF00072 Response regulator receiver domain NIH92_18495 PF01037 Lrp/AsnC ligand binding domain NIH92_18495 PF13404 AsnC-type helix-turn-helix domain NIH92_18505 PF00717 Peptidase S24-like NIH92_18530 PF18011 C-terminal domain found in long catalases NIH92_18530 PF06628 Catalase-related immune-responsive NIH92_18530 PF00199 Catalase NIH92_18540 PF00994 Probable molybdopterin binding domain NIH92_18540 PF18146 Damage-inducible protein CinA KH domain NIH92_18540 PF02464 Competence-damaged protein NIH92_18575 PF03466 LysR substrate binding domain NIH92_18575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18595 PF00501 AMP-binding enzyme NIH92_18595 PF13193 AMP-binding enzyme C-terminal domain NIH92_18600 PF00440 Bacterial regulatory proteins, tetR family NIH92_18605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_18605 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_18605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_18610 PF01039 Carboxyl transferase domain NIH92_18615 PF00378 Enoyl-CoA hydratase/isomerase NIH92_18620 PF18140 Propionyl-coenzyme A carboxylase BT domain NIH92_18620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIH92_18620 PF00364 Biotin-requiring enzyme NIH92_18620 PF00289 Biotin carboxylase, N-terminal domain NIH92_18620 PF02785 Biotin carboxylase C-terminal domain NIH92_18625 PF00682 HMGL-like NIH92_18630 PF03466 LysR substrate binding domain NIH92_18630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18645 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_18645 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIH92_18645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_18645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_18655 PF07690 Major Facilitator Superfamily NIH92_18665 PF01144 Coenzyme A transferase NIH92_18670 PF01144 Coenzyme A transferase NIH92_18675 PF07690 Major Facilitator Superfamily NIH92_18680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_18680 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_18680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_18685 PF00378 Enoyl-CoA hydratase/isomerase NIH92_18695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIH92_18695 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIH92_18695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIH92_18700 PF00108 Thiolase, N-terminal domain NIH92_18700 PF02803 Thiolase, C-terminal domain NIH92_18705 PF09339 IclR helix-turn-helix domain NIH92_18710 PF07690 Major Facilitator Superfamily NIH92_18715 PF03060 Nitronate monooxygenase NIH92_18720 PF00378 Enoyl-CoA hydratase/isomerase NIH92_18725 PF09339 IclR helix-turn-helix domain NIH92_18730 PF02515 CoA-transferase family III NIH92_18735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIH92_18735 PF02770 Acyl-CoA dehydrogenase, middle domain NIH92_18735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIH92_18740 PF07690 Major Facilitator Superfamily NIH92_18745 PF13419 Haloacid dehalogenase-like hydrolase NIH92_18750 PF00266 Aminotransferase class-V NIH92_18755 PF01266 FAD dependent oxidoreductase NIH92_18760 PF00528 Binding-protein-dependent transport system inner membrane component NIH92_18765 PF00005 ABC transporter NIH92_18765 PF08402 TOBE domain NIH92_18775 PF00392 Bacterial regulatory proteins, gntR family NIH92_18775 PF07702 UTRA domain NIH92_18780 PF01494 FAD binding domain NIH92_18785 PF01614 Bacterial transcriptional regulator NIH92_18785 PF09339 IclR helix-turn-helix domain NIH92_18790 PF02525 Flavodoxin-like fold NIH92_18795 PF03466 LysR substrate binding domain NIH92_18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIH92_18800 PF02627 Carboxymuconolactone decarboxylase family NIH92_18805 PF00171 Aldehyde dehydrogenase family NIH92_18815 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIH92_18825 PF00171 Aldehyde dehydrogenase family NIH92_18830 PF00296 Luciferase-like monooxygenase NIH92_18835 PF01613 Flavin reductase like domain NIH92_18840 PF12697 Alpha/beta hydrolase family NIH92_18860 PF01292 Prokaryotic cytochrome b561 NIH92_18865 PF00199 Catalase NIH92_18895 PF03061 Thioesterase superfamily NIH92_18900 PF00132 Bacterial transferase hexapeptide (six repeats) NIH92_18905 PF08223 PaaX-like protein C-terminal domain NIH92_18905 PF07848 PaaX-like protein NIH92_18910 PF14535 AMP-binding enzyme C-terminal domain NIH92_18910 PF00501 AMP-binding enzyme NIH92_18915 PF00108 Thiolase, N-terminal domain NIH92_18915 PF02803 Thiolase, C-terminal domain NIH92_18920 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIH92_18920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIH92_18920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIH92_18925 PF00378 Enoyl-CoA hydratase/isomerase NIH92_18930 PF00378 Enoyl-CoA hydratase/isomerase NIH92_18935 PF00970 Oxidoreductase FAD-binding domain NIH92_18935 PF00111 2Fe-2S iron-sulfur cluster binding domain NIH92_18935 PF00175 Oxidoreductase NAD-binding domain NIH92_18940 PF01883 Iron-sulfur cluster assembly protein NIH92_18945 PF05138 Phenylacetic acid catabolic protein NIH92_18950 PF06243 Phenylacetic acid degradation B NIH92_18955 PF05138 Phenylacetic acid catabolic protein NIH92_18960 PF00171 Aldehyde dehydrogenase family NIH92_18960 PF01575 MaoC like domain NIH92_18965 PF03315 Serine dehydratase beta chain NIH92_18965 PF03313 Serine dehydratase alpha chain NIH92_18970 PF13520 Amino acid permease