locus-tag class description NIK71_00035 PF13614 AAA domain NIK71_00040 PF10544 T5orf172 domain NIK71_00060 PF00905 Penicillin binding protein transpeptidase domain NIK71_00080 PF13614 AAA domain NIK71_00085 PF10544 T5orf172 domain NIK71_00110 PF13737 Transposase DDE domain NIK71_00130 PF02567 Phenazine biosynthesis-like protein NIK71_00155 PF01011 PQQ enzyme repeat NIK71_00155 PF13360 PQQ-like domain NIK71_00225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_00225 PF13755 Sensor N-terminal transmembrane domain NIK71_00225 PF13756 Stimulus-sensing domain NIK71_00225 PF00512 His Kinase A (phospho-acceptor) domain NIK71_00225 PF00672 HAMP domain NIK71_00235 PF00268 Ribonucleotide reductase, small chain NIK71_00245 PF02867 Ribonucleotide reductase, barrel domain NIK71_00245 PF03477 ATP cone domain NIK71_00245 PF00317 Ribonucleotide reductase, all-alpha domain NIK71_00255 PF00486 Transcriptional regulatory protein, C terminal NIK71_00255 PF00072 Response regulator receiver domain NIK71_00260 PF00672 HAMP domain NIK71_00260 PF00512 His Kinase A (phospho-acceptor) domain NIK71_00260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_00270 PF17151 Periplasmic sensor domain NIK71_00270 PF00990 Diguanylate cyclase, GGDEF domain NIK71_00275 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NIK71_00280 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NIK71_00285 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NIK71_00285 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NIK71_00295 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NIK71_00295 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NIK71_00295 PF10531 SLBB domain NIK71_00300 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIK71_00300 PF00384 Molybdopterin oxidoreductase NIK71_00300 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NIK71_00305 PF00146 NADH dehydrogenase NIK71_00310 PF12838 4Fe-4S dicluster domain NIK71_00315 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NIK71_00320 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIK71_00325 PF00361 Proton-conducting membrane transporter NIK71_00325 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIK71_00330 PF00361 Proton-conducting membrane transporter NIK71_00335 PF00361 Proton-conducting membrane transporter NIK71_00345 PF00313 'Cold-shock' DNA-binding domain NIK71_00350 PF03466 LysR substrate binding domain NIK71_00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_00355 PF00175 Oxidoreductase NAD-binding domain NIK71_00355 PF00970 Oxidoreductase FAD-binding domain NIK71_00370 PF05552 Conserved TM helix NIK71_00385 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_00390 PF13533 Biotin-lipoyl like NIK71_00415 PF09334 tRNA synthetases class I (M) NIK71_00415 PF01588 Putative tRNA binding domain NIK71_00425 PF10609 NUBPL iron-transfer P-loop NTPase NIK71_00430 PF01048 Phosphorylase superfamily NIK71_00445 PF00692 dUTPase NIK71_00475 PF01207 Dihydrouridine synthase (Dus) NIK71_00485 PF02978 Signal peptide binding domain NIK71_00485 PF00448 SRP54-type protein, GTPase domain NIK71_00485 PF02881 SRP54-type protein, helical bundle domain NIK71_00490 PF03309 Type III pantothenate kinase NIK71_00500 PF01925 Sulfite exporter TauE/SafE NIK71_00510 PF02463 RecF/RecN/SMC N terminal domain NIK71_00510 PF06470 SMC proteins Flexible Hinge Domain NIK71_00520 PF01653 NAD-dependent DNA ligase adenylation domain NIK71_00520 PF03120 NAD-dependent DNA ligase OB-fold domain NIK71_00520 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NIK71_00520 PF12826 Helix-hairpin-helix motif NIK71_00520 PF00533 BRCA1 C Terminus (BRCT) domain NIK71_00525 PF00210 Ferritin-like domain NIK71_00530 PF07690 Major Facilitator Superfamily NIK71_00535 PF00982 Glycosyltransferase family 20 NIK71_00540 PF02358 Trehalose-phosphatase NIK71_00545 PF08241 Methyltransferase domain NIK71_00545 PF12697 Alpha/beta hydrolase family NIK71_00550 PF04055 Radical SAM superfamily NIK71_00550 PF06968 Biotin and Thiamin Synthesis associated domain NIK71_00550 PF00202 Aminotransferase class-III NIK71_00555 PF00155 Aminotransferase class I and II NIK71_00570 PF00849 RNA pseudouridylate synthase NIK71_00570 PF01479 S4 domain NIK71_00575 PF04079 Segregation and condensation complex subunit ScpB NIK71_00580 PF02616 Segregation and condensation protein ScpA NIK71_00585 PF01300 Telomere recombination NIK71_00590 PF04315 Elongation factor P hydroxylase NIK71_00595 PF02620 Large ribosomal RNA subunit accumulation protein YceD NIK71_00600 PF01783 Ribosomal L32p protein family NIK71_00605 PF00698 Acyl transferase domain NIK71_00615 PF00550 Phosphopantetheine attachment site NIK71_00620 PF04972 BON domain NIK71_00620 PF01476 LysM domain NIK71_00625 PF02581 Thiamine monophosphate synthase NIK71_00625 PF03070 TENA/THI-4/PQQC family NIK71_00625 PF08543 Phosphomethylpyrimidine kinase NIK71_00635 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIK71_00650 PF02261 Aspartate decarboxylase NIK71_00655 PF01195 Peptidyl-tRNA hydrolase NIK71_00660 PF01386 Ribosomal L25p family NIK71_00665 PF14572 Phosphoribosyl synthetase-associated domain NIK71_00665 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIK71_00690 PF00288 GHMP kinases N terminal domain NIK71_00690 PF08544 GHMP kinases C terminal NIK71_00695 PF03550 Outer membrane lipoprotein LolB NIK71_00705 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NIK71_00705 PF01488 Shikimate / quinate 5-dehydrogenase NIK71_00705 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NIK71_00710 PF01807 CHC2 zinc finger NIK71_00710 PF08278 DNA primase DnaG DnaB-binding NIK71_00710 PF08275 DNA primase catalytic core, N-terminal domain NIK71_00710 PF10410 DnaB-helicase binding domain of primase NIK71_00715 PF13525 Outer membrane lipoprotein NIK71_00720 PF01479 S4 domain NIK71_00720 PF00849 RNA pseudouridylate synthase NIK71_00725 PF02578 Multi-copper polyphenol oxidoreductase laccase NIK71_00730 PF03358 NADPH-dependent FMN reductase NIK71_00735 PF01668 SmpB protein NIK71_00740 PF01467 Cytidylyltransferase-like NIK71_00745 PF00037 4Fe-4S binding domain NIK71_00765 PF03466 LysR substrate binding domain NIK71_00765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_00770 PF00180 Isocitrate/isopropylmalate dehydrogenase NIK71_00775 PF02028 BCCT, betaine/carnitine/choline family transporter NIK71_00780 PF07859 alpha/beta hydrolase fold NIK71_00785 PF00355 Rieske [2Fe-2S] domain NIK71_00785 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIK71_00790 PF00171 Aldehyde dehydrogenase family NIK71_00795 PF00970 Oxidoreductase FAD-binding domain NIK71_00795 PF00111 2Fe-2S iron-sulfur cluster binding domain NIK71_00795 PF00175 Oxidoreductase NAD-binding domain NIK71_00810 PF00795 Carbon-nitrogen hydrolase NIK71_00810 PF02540 NAD synthase NIK71_00820 PF05726 Pirin C-terminal cupin domain NIK71_00820 PF02678 Pirin NIK71_00825 PF03653 Uncharacterised protein family (UPF0093) NIK71_00830 PF02801 Beta-ketoacyl synthase, C-terminal domain NIK71_00830 PF00109 Beta-ketoacyl synthase, N-terminal domain NIK71_00840 PF00164 Ribosomal protein S12/S23 NIK71_00845 PF00177 Ribosomal protein S7p/S5e NIK71_00850 PF00009 Elongation factor Tu GTP binding domain NIK71_00850 PF03144 Elongation factor Tu domain 2 NIK71_00850 PF00679 Elongation factor G C-terminus NIK71_00850 PF14492 Elongation Factor G, domain II NIK71_00850 PF03764 Elongation factor G, domain IV NIK71_00855 PF03143 Elongation factor Tu C-terminal domain NIK71_00855 PF03144 Elongation factor Tu domain 2 NIK71_00855 PF00009 Elongation factor Tu GTP binding domain NIK71_00870 PF00583 Acetyltransferase (GNAT) family NIK71_00875 PF04377 Arginine-tRNA-protein transferase, C terminus NIK71_00875 PF04376 Arginine-tRNA-protein transferase, N terminus NIK71_00880 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NIK71_00885 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_00890 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NIK71_00890 PF09397 Ftsk gamma domain NIK71_00890 PF01580 FtsK/SpoIIIE family NIK71_00890 PF17854 FtsK alpha domain NIK71_00895 PF01810 LysE type translocator NIK71_00910 PF03776 Septum formation topological specificity factor MinE NIK71_00915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NIK71_00920 PF03775 Septum formation inhibitor MinC, C-terminal domain NIK71_00930 PF01553 Acyltransferase NIK71_00935 PF13488 Glycine zipper NIK71_00935 PF00691 OmpA family NIK71_00940 PF00580 UvrD/REP helicase N-terminal domain NIK71_00940 PF13361 UvrD-like helicase C-terminal domain NIK71_00945 PF00692 dUTPase NIK71_00950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIK71_00950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIK71_00950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIK71_00950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIK71_00955 PF00696 Amino acid kinase family NIK71_00965 PF13230 Glutamine amidotransferases class-II NIK71_00970 PF01814 Hemerythrin HHE cation binding domain NIK71_00980 PF03658 RnfH family Ubiquitin NIK71_00985 PF04355 SmpA / OmlA family NIK71_00990 PF01475 Ferric uptake regulator family NIK71_00995 PF00437 Type II/IV secretion system protein NIK71_01000 PF00437 Type II/IV secretion system protein NIK71_01005 PF01168 Alanine racemase, N-terminal domain NIK71_01015 PF00149 Calcineurin-like phosphoesterase NIK71_01015 PF12320 Type 5 capsule protein repressor C-terminal domain NIK71_01035 PF08338 Domain of unknown function (DUF1731) NIK71_01035 PF01370 NAD dependent epimerase/dehydratase family NIK71_01040 PF01266 FAD dependent oxidoreductase NIK71_01045 PF00490 Delta-aminolevulinic acid dehydratase NIK71_01050 PF03061 Thioesterase superfamily NIK71_01055 PF13533 Biotin-lipoyl like NIK71_01060 PF07690 Major Facilitator Superfamily NIK71_01100 PF00929 Exonuclease NIK71_01170 PF00145 C-5 cytosine-specific DNA methylase NIK71_01175 PF01555 DNA methylase NIK71_01205 PF01555 DNA methylase NIK71_01215 PF01695 IstB-like ATP binding protein NIK71_01420 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NIK71_01460 PF00712 DNA polymerase III beta subunit, N-terminal domain NIK71_01460 PF02767 DNA polymerase III beta subunit, central domain NIK71_01460 PF02768 DNA polymerase III beta subunit, C-terminal domain NIK71_01595 PF00083 Sugar (and other) transporter NIK71_01600 PF00701 Dihydrodipicolinate synthetase family NIK71_01610 PF04542 Sigma-70 region 2 NIK71_01610 PF08281 Sigma-70, region 4 NIK71_01620 PF07715 TonB-dependent Receptor Plug Domain NIK71_01620 PF00593 TonB dependent receptor NIK71_01630 PF04575 Protein of unknown function (DUF560) NIK71_01640 PF01126 Heme oxygenase NIK71_01665 PF13520 Amino acid permease NIK71_01670 PF02574 Homocysteine S-methyltransferase NIK71_01680 PF06039 Malate:quinone oxidoreductase (Mqo) NIK71_01685 PF05199 GMC oxidoreductase NIK71_01685 PF00732 GMC oxidoreductase NIK71_01690 PF00171 Aldehyde dehydrogenase family NIK71_01695 PF13977 BetI-type transcriptional repressor, C-terminal NIK71_01695 PF00440 Bacterial regulatory proteins, tetR family NIK71_01700 PF02028 BCCT, betaine/carnitine/choline family transporter NIK71_01705 PF02028 BCCT, betaine/carnitine/choline family transporter NIK71_01715 PF03061 Thioesterase superfamily NIK71_01725 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIK71_01725 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIK71_01730 PF00375 Sodium:dicarboxylate symporter family NIK71_01735 PF07152 YaeQ protein NIK71_01740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIK71_01745 PF01522 Polysaccharide deacetylase NIK71_01745 PF14883 Hypothetical glycosyl hydrolase family 13 NIK71_01750 PF00535 Glycosyl transferase family 2 NIK71_01760 PF00378 Enoyl-CoA hydratase/isomerase NIK71_01775 PF01614 Bacterial transcriptional regulator NIK71_01775 PF09339 IclR helix-turn-helix domain NIK71_01780 PF00355 Rieske [2Fe-2S] domain NIK71_01790 PF00355 Rieske [2Fe-2S] domain NIK71_01800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIK71_01805 PF14759 Reductase C-terminal NIK71_01805 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_01810 PF07690 Major Facilitator Superfamily NIK71_01820 PF12697 Alpha/beta hydrolase family NIK71_01830 PF01958 Domain of unknown function DUF108 NIK71_01830 PF03447 Homoserine dehydrogenase, NAD binding domain NIK71_01835 PF00171 Aldehyde dehydrogenase family NIK71_01840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIK71_01840 PF00205 Thiamine pyrophosphate enzyme, central domain NIK71_01840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIK71_01850 PF07690 Major Facilitator Superfamily NIK71_01855 PF01327 Polypeptide deformylase NIK71_01860 PF04960 Glutaminase NIK71_01865 PF12833 Helix-turn-helix domain NIK71_01865 PF02311 AraC-like ligand binding domain NIK71_01870 PF07690 Major Facilitator Superfamily NIK71_01875 PF01263 Aldose 1-epimerase NIK71_01885 PF03466 LysR substrate binding domain NIK71_01885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_01895 PF07690 Major Facilitator Superfamily NIK71_01900 PF00456 Transketolase, thiamine diphosphate binding domain NIK71_01905 PF02780 Transketolase, C-terminal domain NIK71_01905 PF02779 Transketolase, pyrimidine binding domain NIK71_01910 PF02965 Vitamin B12 dependent methionine synthase, activation domain NIK71_01910 PF02607 B12 binding domain NIK71_01910 PF02310 B12 binding domain NIK71_01910 PF00809 Pterin binding enzyme NIK71_01910 PF02574 Homocysteine S-methyltransferase NIK71_01915 PF01384 Phosphate transporter family NIK71_01920 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_01935 PF03781 Sulfatase-modifying factor enzyme 1 NIK71_01940 PF00884 Sulfatase NIK71_01950 PF01106 NifU-like domain NIK71_01950 PF01521 Iron-sulphur cluster biosynthesis NIK71_01955 PF07715 TonB-dependent Receptor Plug Domain NIK71_01955 PF00593 TonB dependent receptor NIK71_01965 PF00561 alpha/beta hydrolase fold NIK71_01970 PF00484 Carbonic anhydrase NIK71_01975 PF13472 GDSL-like Lipase/Acylhydrolase family NIK71_01980 PF00005 ABC transporter NIK71_01990 PF01694 Rhomboid family NIK71_01995 PF00912 Transglycosylase NIK71_02000 PF02503 Polyphosphate kinase middle domain NIK71_02000 PF13090 Polyphosphate kinase C-terminal domain 2 NIK71_02000 PF17941 Polyphosphate kinase C-terminal domain 1 NIK71_02000 PF13089 Polyphosphate kinase N-terminal domain NIK71_02010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_02010 PF03466 LysR substrate binding domain NIK71_02015 PF00561 alpha/beta hydrolase fold NIK71_02020 PF18113 Rubredoxin binding C-terminal domain NIK71_02020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_02025 PF00301 Rubredoxin NIK71_02040 PF00152 tRNA synthetases class II (D, K and N) NIK71_02040 PF01336 OB-fold nucleic acid binding domain NIK71_02045 PF14052 Capsule assembly protein Wzi NIK71_02055 PF01507 Phosphoadenosine phosphosulfate reductase family NIK71_02060 PF00009 Elongation factor Tu GTP binding domain NIK71_02075 PF03600 Citrate transporter NIK71_02080 PF01595 Cyclin M transmembrane N-terminal domain NIK71_02080 PF03471 Transporter associated domain NIK71_02080 PF00571 CBS domain NIK71_02085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_02085 PF03466 LysR substrate binding domain NIK71_02090 PF00463 Isocitrate lyase family NIK71_02105 PF01774 UreD urease accessory protein NIK71_02110 PF00547 Urease, gamma subunit NIK71_02115 PF00699 Urease beta subunit NIK71_02120 PF01979 Amidohydrolase family NIK71_02120 PF00449 Urease alpha-subunit, N-terminal domain NIK71_02125 PF05194 UreE urease accessory protein, C-terminal domain NIK71_02125 PF02814 UreE urease accessory protein, N-terminal domain NIK71_02130 PF01730 UreF NIK71_02135 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIK71_02150 PF03717 Penicillin-binding Protein dimerisation domain NIK71_02150 PF00905 Penicillin binding protein transpeptidase domain NIK71_02165 PF05191 Adenylate kinase, active site lid NIK71_02175 PF10576 Iron-sulfur binding domain of endonuclease III NIK71_02175 PF00633 Helix-hairpin-helix motif NIK71_02175 PF00730 HhH-GPD superfamily base excision DNA repair protein NIK71_02180 PF04060 Putative Fe-S cluster NIK71_02185 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIK71_02185 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIK71_02195 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NIK71_02200 PF02590 Predicted SPOUT methyltransferase NIK71_02205 PF05362 Lon protease (S16) C-terminal proteolytic domain NIK71_02205 PF00004 ATPase family associated with various cellular activities (AAA) NIK71_02205 PF02190 ATP-dependent protease La (LON) substrate-binding domain NIK71_02210 PF13018 Extended Signal Peptide of Type V secretion system NIK71_02210 PF05662 Coiled stalk of trimeric autotransporter adhesin NIK71_02210 PF05658 Head domain of trimeric autotransporter adhesin NIK71_02210 PF03895 YadA-like membrane anchor domain NIK71_02215 PF04355 SmpA / OmlA family NIK71_02215 PF00691 OmpA family NIK71_02220 PF01812 5-formyltetrahydrofolate cyclo-ligase family NIK71_02420 PF13610 DDE domain NIK71_02430 PF00753 Metallo-beta-lactamase superfamily NIK71_02430 PF16123 Hydroxyacylglutathione hydrolase C-terminus NIK71_02435 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_02440 PF09383 NIL domain NIK71_02440 PF00005 ABC transporter NIK71_02445 PF03180 NLPA lipoprotein NIK71_02450 PF02844 Phosphoribosylglycinamide synthetase, N domain NIK71_02450 PF02843 Phosphoribosylglycinamide synthetase, C domain NIK71_02450 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NIK71_02455 PF02142 MGS-like domain NIK71_02455 PF01808 AICARFT/IMPCHase bienzyme NIK71_02460 PF02954 Bacterial regulatory protein, Fis family NIK71_02480 PF01134 Glucose inhibited division protein A NIK71_02480 PF13932 GidA associated domain NIK71_02490 PF14403 Circularly permuted ATP-grasp type 2 NIK71_02500 PF01841 Transglutaminase-like superfamily NIK71_02500 PF08379 Bacterial transglutaminase-like N-terminal region NIK71_02510 PF00842 Alanine racemase, C-terminal domain NIK71_02510 PF01168 Alanine racemase, N-terminal domain NIK71_02515 PF00772 DnaB-like helicase N terminal domain NIK71_02515 PF03796 DnaB-like helicase C terminal domain NIK71_02520 PF03948 Ribosomal protein L9, C-terminal domain NIK71_02520 PF01281 Ribosomal protein L9, N-terminal domain NIK71_02525 PF01084 Ribosomal protein S18 NIK71_02530 PF01250 Ribosomal protein S6 NIK71_02535 PF01040 UbiA prenyltransferase family NIK71_02540 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NIK71_02545 PF00510 Cytochrome c oxidase subunit III NIK71_02550 PF00115 Cytochrome C and Quinol oxidase polypeptide I NIK71_02555 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NIK71_02555 PF06481 COX Aromatic Rich Motif NIK71_02565 PF00391 PEP-utilising enzyme, mobile domain NIK71_02565 PF02896 PEP-utilising enzyme, TIM barrel domain NIK71_02565 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NIK71_02570 PF03618 Kinase/pyrophosphorylase NIK71_02580 PF14883 Hypothetical glycosyl hydrolase family 13 NIK71_02580 PF01522 Polysaccharide deacetylase NIK71_02585 PF00535 Glycosyl transferase family 2 NIK71_02600 PF00296 Luciferase-like monooxygenase NIK71_02615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_02615 PF03466 LysR substrate binding domain NIK71_02625 PF00472 RF-1 domain NIK71_02625 PF03462 PCRF domain NIK71_02630 PF13847 Methyltransferase domain NIK71_02630 PF17827 PrmC N-terminal domain NIK71_02635 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_02640 PF09084 NMT1/THI5 like NIK71_02645 PF12833 Helix-turn-helix domain NIK71_02650 PF00106 short chain dehydrogenase NIK71_02660 PF13193 AMP-binding enzyme C-terminal domain NIK71_02660 PF00501 AMP-binding enzyme NIK71_02665 PF01613 Flavin reductase like domain NIK71_02670 PF00899 ThiF family NIK71_02675 PF03109 ABC1 family NIK71_02690 PF03814 Potassium-transporting ATPase A subunit NIK71_02700 PF02669 K+-transporting ATPase, c chain NIK71_02705 PF13493 Domain of unknown function (DUF4118) NIK71_02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_02705 PF00512 His Kinase A (phospho-acceptor) domain NIK71_02705 PF02702 Osmosensitive K+ channel His kinase sensor domain NIK71_02710 PF00486 Transcriptional regulatory protein, C terminal NIK71_02710 PF00072 Response regulator receiver domain NIK71_02715 PF00120 Glutamine synthetase, catalytic domain NIK71_02725 PF03232 Ubiquinone biosynthesis protein COQ7 NIK71_02730 PF07690 Major Facilitator Superfamily NIK71_02735 PF17243 POTRA domain TamA domain 1 NIK71_02735 PF07244 Surface antigen variable number repeat NIK71_02735 PF01103 Surface antigen NIK71_02750 PF00330 Aconitase family (aconitate hydratase) NIK71_02750 PF06434 Aconitate hydratase 2 N-terminus NIK71_02750 PF11791 Aconitate B N-terminal domain NIK71_02760 PF00027 Cyclic nucleotide-binding domain NIK71_02760 PF00520 Ion transport protein NIK71_02765 PF07690 Major Facilitator Superfamily NIK71_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_02780 PF03466 LysR substrate binding domain NIK71_02785 PF04284 Protein of unknown function (DUF441) NIK71_02795 PF00849 RNA pseudouridylate synthase NIK71_02795 PF01479 S4 domain NIK71_02810 PF00849 RNA pseudouridylate synthase NIK71_02810 PF01479 S4 domain NIK71_02815 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NIK71_02820 PF08676 MutL C terminal dimerisation domain NIK71_02820 PF01119 DNA mismatch repair protein, C-terminal domain NIK71_02830 PF17209 Hfq protein NIK71_02840 PF00881 Nitroreductase family NIK71_02850 PF00149 Calcineurin-like phosphoesterase NIK71_02855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIK71_02860 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIK71_02860 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NIK71_02865 PF00117 Glutamine amidotransferase class-I NIK71_02865 PF00958 GMP synthase C terminal domain NIK71_02865 PF02540 NAD synthase NIK71_02870 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NIK71_02875 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NIK71_02880 PF13520 Amino acid permease NIK71_02885 PF00171 Aldehyde dehydrogenase family NIK71_02900 PF00465 Iron-containing alcohol dehydrogenase NIK71_02905 PF14493 Helix-turn-helix domain NIK71_02905 PF05970 PIF1-like helicase NIK71_02915 PF06445 GyrI-like small molecule binding domain NIK71_02920 PF02110 Hydroxyethylthiazole kinase family NIK71_02935 PF01433 Peptidase family M1 domain NIK71_02935 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NIK71_02935 PF11940 Domain of unknown function (DUF3458) Ig-like fold NIK71_02945 PF00106 short chain dehydrogenase NIK71_02955 PF01817 Chorismate mutase type II NIK71_02960 PF01037 Lrp/AsnC ligand binding domain NIK71_02975 PF00440 Bacterial regulatory proteins, tetR family NIK71_02980 PF00593 TonB dependent receptor NIK71_02980 PF07715 TonB-dependent Receptor Plug Domain NIK71_02990 PF00924 Mechanosensitive ion channel NIK71_03025 PF07715 TonB-dependent Receptor Plug Domain NIK71_03025 PF00593 TonB dependent receptor NIK71_03045 PF12848 ABC transporter NIK71_03045 PF00005 ABC transporter NIK71_03050 PF00582 Universal stress protein family NIK71_03075 PF00689 Cation transporting ATPase, C-terminus NIK71_03075 PF00690 Cation transporter/ATPase, N-terminus NIK71_03080 PF02308 MgtC family NIK71_03085 PF03594 Benzoate membrane transport protein NIK71_03090 PF01037 Lrp/AsnC ligand binding domain NIK71_03095 PF01810 LysE type translocator NIK71_03100 PF00923 Transaldolase/Fructose-6-phosphate aldolase NIK71_03105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_03105 PF03466 LysR substrate binding domain NIK71_03115 PF02803 Thiolase, C-terminal domain NIK71_03115 PF00108 Thiolase, N-terminal domain NIK71_03125 PF01575 MaoC like domain NIK71_03130 PF00144 Beta-lactamase NIK71_03140 PF07690 Major Facilitator Superfamily NIK71_03145 PF12169 DNA polymerase III subunits gamma and tau domain III NIK71_03145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NIK71_03145 PF12170 DNA polymerase III tau subunit V interacting with alpha NIK71_03150 PF04185 Phosphoesterase family NIK71_03150 PF05506 Domain of unknown function (DUF756) NIK71_03155 PF03061 Thioesterase superfamily NIK71_03160 PF00465 Iron-containing alcohol dehydrogenase NIK71_03170 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIK71_03175 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NIK71_03175 PF01565 FAD binding domain NIK71_03190 PF01645 Conserved region in glutamate synthase NIK71_03210 PF12832 MFS_1 like family NIK71_03220 PF02785 Biotin carboxylase C-terminal domain NIK71_03220 PF00289 Biotin carboxylase, N-terminal domain NIK71_03220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIK71_03225 PF00364 Biotin-requiring enzyme NIK71_03230 PF01220 Dehydroquinase class II NIK71_03235 PF13438 Domain of unknown function (DUF4113) NIK71_03235 PF00817 impB/mucB/samB family NIK71_03235 PF11799 impB/mucB/samB family C-terminal domain NIK71_03245 PF00005 ABC transporter NIK71_03250 PF00072 Response regulator receiver domain NIK71_03250 PF00486 Transcriptional regulatory protein, C terminal NIK71_03260 PF04324 BFD-like [2Fe-2S] binding domain NIK71_03260 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIK71_03260 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIK71_03260 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_03260 PF13806 Rieske-like [2Fe-2S] domain NIK71_03260 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIK71_03265 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_03265 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIK71_03265 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIK71_03265 PF04324 BFD-like [2Fe-2S] binding domain NIK71_03265 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIK71_03270 PF04324 BFD-like [2Fe-2S] binding domain NIK71_03270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIK71_03270 PF00384 Molybdopterin oxidoreductase NIK71_03270 PF01568 Molydopterin dinucleotide binding domain NIK71_03275 PF12804 MobA-like NTP transferase domain NIK71_03280 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIK71_03280 PF00384 Molybdopterin oxidoreductase NIK71_03280 PF01568 Molydopterin dinucleotide binding domain NIK71_03285 PF06463 Molybdenum Cofactor Synthesis C NIK71_03285 PF04055 Radical SAM superfamily NIK71_03295 PF02391 MoaE protein NIK71_03300 PF01967 MoaC family NIK71_03300 PF00994 Probable molybdopterin binding domain NIK71_03305 PF00994 Probable molybdopterin binding domain NIK71_03305 PF03454 MoeA C-terminal region (domain IV) NIK71_03305 PF03453 MoeA N-terminal region (domain I and II) NIK71_03310 PF01638 HxlR-like helix-turn-helix NIK71_03315 PF00155 Aminotransferase class I and II NIK71_03315 PF00392 Bacterial regulatory proteins, gntR family NIK71_03320 PF00892 EamA-like transporter family NIK71_03340 PF02635 DsrE/DsrF-like family NIK71_03345 PF16363 GDP-mannose 4,6 dehydratase NIK71_03350 PF10415 Fumarase C C-terminus NIK71_03350 PF00206 Lyase NIK71_03370 PF01266 FAD dependent oxidoreductase NIK71_03380 PF02542 YgbB family NIK71_03390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIK71_03390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIK71_03395 PF00440 Bacterial regulatory proteins, tetR family NIK71_03400 PF02954 Bacterial regulatory protein, Fis family NIK71_03400 PF00072 Response regulator receiver domain NIK71_03400 PF00158 Sigma-54 interaction domain NIK71_03405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_03405 PF00989 PAS fold NIK71_03405 PF00512 His Kinase A (phospho-acceptor) domain NIK71_03410 PF18693 TRAM domain NIK71_03410 PF04055 Radical SAM superfamily NIK71_03410 PF00919 Uncharacterized protein family UPF0004 NIK71_03415 PF00696 Amino acid kinase family NIK71_03420 PF01765 Ribosome recycling factor NIK71_03425 PF01255 Putative undecaprenyl diphosphate synthase NIK71_03435 PF13288 DXP reductoisomerase C-terminal domain NIK71_03435 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NIK71_03435 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NIK71_03440 PF13180 PDZ domain NIK71_03440 PF17820 PDZ domain NIK71_03440 PF02163 Peptidase family M50 NIK71_03445 PF07244 Surface antigen variable number repeat NIK71_03445 PF01103 Surface antigen NIK71_03455 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_03455 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NIK71_03460 PF07977 FabA-like domain NIK71_03465 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NIK71_03465 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_03480 PF02631 RecX family NIK71_03485 PF00154 recA bacterial DNA recombination protein NIK71_03490 PF01479 S4 domain NIK71_03495 PF13419 Haloacid dehalogenase-like hydrolase NIK71_03520 PF01037 Lrp/AsnC ligand binding domain NIK71_03525 PF00266 Aminotransferase class-V NIK71_03530 PF00324 Amino acid permease NIK71_03545 PF05922 Peptidase inhibitor I9 NIK71_03545 PF00082 Subtilase family NIK71_03550 PF01740 STAS domain NIK71_03550 PF00916 Sulfate permease family NIK71_03555 PF02586 SOS response associated peptidase (SRAP) NIK71_03560 PF07995 Glucose / Sorbosone dehydrogenase NIK71_03570 PF03707 Bacterial signalling protein N terminal repeat NIK71_03570 PF00990 Diguanylate cyclase, GGDEF domain NIK71_03570 PF00563 EAL domain NIK71_03590 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NIK71_03590 PF02378 Phosphotransferase system, EIIC NIK71_03595 PF00294 pfkB family carbohydrate kinase NIK71_03600 PF00381 PTS HPr component phosphorylation site NIK71_03600 PF02896 PEP-utilising enzyme, TIM barrel domain NIK71_03600 PF00391 PEP-utilising enzyme, mobile domain NIK71_03600 PF05524 PEP-utilising enzyme, N-terminal NIK71_03600 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NIK71_03625 PF05525 Branched-chain amino acid transport protein NIK71_03630 PF00557 Metallopeptidase family M24 NIK71_03635 PF03466 LysR substrate binding domain NIK71_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_03645 PF00462 Glutaredoxin NIK71_03650 PF00202 Aminotransferase class-III NIK71_03655 PF00478 IMP dehydrogenase / GMP reductase domain NIK71_03655 PF00571 CBS domain NIK71_03680 PF00448 SRP54-type protein, GTPase domain NIK71_03680 PF02881 SRP54-type protein, helical bundle domain NIK71_03690 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NIK71_03705 PF08173 Membrane bound YbgT-like protein NIK71_03710 PF02322 Cytochrome bd terminal oxidase subunit II NIK71_03715 PF01654 Cytochrome bd terminal oxidase subunit I NIK71_03725 PF13737 Transposase DDE domain NIK71_03730 PF07290 Protein of unknown function (DUF1449) NIK71_03740 PF00294 pfkB family carbohydrate kinase NIK71_03745 PF07715 TonB-dependent Receptor Plug Domain NIK71_03745 PF00593 TonB dependent receptor NIK71_03750 PF08367 Peptidase M16C associated NIK71_03750 PF05193 Peptidase M16 inactive domain NIK71_03750 PF00675 Insulinase (Peptidase family M16) NIK71_03755 PF02253 Phospholipase A1 NIK71_03760 PF02386 Cation transport protein NIK71_03765 PF02080 TrkA-C domain NIK71_03765 PF02254 TrkA-N domain NIK71_03770 PF00585 C-terminal regulatory domain of Threonine dehydratase NIK71_03770 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_03775 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NIK71_03790 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIK71_03790 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIK71_03800 PF02617 ATP-dependent Clp protease adaptor protein ClpS NIK71_03805 PF07724 AAA domain (Cdc48 subfamily) NIK71_03805 PF00004 ATPase family associated with various cellular activities (AAA) NIK71_03805 PF02861 Clp amino terminal domain, pathogenicity island component NIK71_03805 PF10431 C-terminal, D2-small domain, of ClpB protein NIK71_03805 PF17871 AAA lid domain NIK71_03810 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NIK71_03815 PF00793 DAHP synthetase I family NIK71_03830 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_03830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIK71_03860 PF06418 CTP synthase N-terminus NIK71_03860 PF00117 Glutamine amidotransferase class-I NIK71_03865 PF00793 DAHP synthetase I family NIK71_03870 PF00113 Enolase, C-terminal TIM barrel domain NIK71_03870 PF03952 Enolase, N-terminal domain NIK71_03875 PF04239 Protein of unknown function (DUF421) NIK71_03880 PF04977 Septum formation initiator NIK71_03885 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NIK71_03890 PF01144 Coenzyme A transferase NIK71_03895 PF01144 Coenzyme A transferase NIK71_03900 PF02803 Thiolase, C-terminal domain NIK71_03900 PF00108 Thiolase, N-terminal domain NIK71_03905 PF10397 Adenylosuccinate lyase C-terminus NIK71_03905 PF00206 Lyase NIK71_03910 PF00561 alpha/beta hydrolase fold NIK71_03915 PF07690 Major Facilitator Superfamily NIK71_03920 PF02627 Carboxymuconolactone decarboxylase family NIK71_03925 PF00775 Dioxygenase NIK71_03925 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NIK71_03930 PF00775 Dioxygenase NIK71_03935 PF01487 Type I 3-dehydroquinase NIK71_03940 PF05048 Periplasmic copper-binding protein (NosD) NIK71_03945 PF04966 Carbohydrate-selective porin, OprB family NIK71_03950 PF01011 PQQ enzyme repeat NIK71_03950 PF13360 PQQ-like domain NIK71_03960 PF04143 Sulphur transport NIK71_03970 PF00753 Metallo-beta-lactamase superfamily NIK71_03975 PF01614 Bacterial transcriptional regulator NIK71_03975 PF09339 IclR helix-turn-helix domain NIK71_03980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_03980 PF03466 LysR substrate binding domain NIK71_03985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_03985 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_03985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_04000 PF00106 short chain dehydrogenase NIK71_04010 PF07690 Major Facilitator Superfamily NIK71_04020 PF01425 Amidase NIK71_04025 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIK71_04040 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIK71_04040 PF00355 Rieske [2Fe-2S] domain NIK71_04055 PF00111 2Fe-2S iron-sulfur cluster binding domain NIK71_04055 PF00175 Oxidoreductase NAD-binding domain NIK71_04060 PF01613 Flavin reductase like domain NIK71_04065 PF02311 AraC-like ligand binding domain NIK71_04065 PF12833 Helix-turn-helix domain NIK71_04070 PF01179 Copper amine oxidase, enzyme domain NIK71_04070 PF07833 Copper amine oxidase N-terminal domain NIK71_04070 PF02727 Copper amine oxidase, N2 domain NIK71_04070 PF02728 Copper amine oxidase, N3 domain NIK71_04080 PF00171 Aldehyde dehydrogenase family NIK71_04085 PF01804 Penicillin amidase NIK71_04090 PF12146 Serine aminopeptidase, S33 NIK71_04095 PF02803 Thiolase, C-terminal domain NIK71_04095 PF00108 Thiolase, N-terminal domain NIK71_04100 PF01144 Coenzyme A transferase NIK71_04105 PF01144 Coenzyme A transferase NIK71_04110 PF04444 Catechol dioxygenase N terminus NIK71_04110 PF00775 Dioxygenase NIK71_04115 PF02426 Muconolactone delta-isomerase NIK71_04120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIK71_04120 PF13378 Enolase C-terminal domain-like NIK71_04125 PF03466 LysR substrate binding domain NIK71_04125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_04135 PF07729 FCD domain NIK71_04135 PF00392 Bacterial regulatory proteins, gntR family NIK71_04140 PF00920 Dehydratase family NIK71_04145 PF07690 Major Facilitator Superfamily NIK71_04155 PF00171 Aldehyde dehydrogenase family NIK71_04175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_04175 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_04175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_04185 PF06506 Propionate catabolism activator NIK71_04185 PF02954 Bacterial regulatory protein, Fis family NIK71_04185 PF00158 Sigma-54 interaction domain NIK71_04190 PF13193 AMP-binding enzyme C-terminal domain NIK71_04190 PF00501 AMP-binding enzyme NIK71_04195 PF04341 Protein of unknown function, DUF485 NIK71_04200 PF00474 Sodium:solute symporter family NIK71_04205 PF00107 Zinc-binding dehydrogenase NIK71_04205 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_04210 PF00171 Aldehyde dehydrogenase family NIK71_04220 PF00561 alpha/beta hydrolase fold NIK71_04225 PF06628 Catalase-related immune-responsive NIK71_04225 PF00199 Catalase NIK71_04240 PF07859 alpha/beta hydrolase fold NIK71_04245 PF01047 MarR family NIK71_04250 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_04250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIK71_04255 PF00106 short chain dehydrogenase NIK71_04260 PF01872 RibD C-terminal domain NIK71_04265 PF00376 MerR family regulatory protein NIK71_04265 PF09278 MerR, DNA binding NIK71_04275 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_04285 PF12706 Beta-lactamase superfamily domain NIK71_04290 PF08359 YsiA-like protein, C-terminal region NIK71_04290 PF00440 Bacterial regulatory proteins, tetR family NIK71_04300 PF00857 Isochorismatase family NIK71_04305 PF03466 LysR substrate binding domain NIK71_04305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_04310 PF07995 Glucose / Sorbosone dehydrogenase NIK71_04315 PF02254 TrkA-N domain NIK71_04315 PF00999 Sodium/hydrogen exchanger family NIK71_04325 PF07687 Peptidase dimerisation domain NIK71_04325 PF01546 Peptidase family M20/M25/M40 NIK71_04335 PF08479 POTRA domain, ShlB-type NIK71_04335 PF17287 POTRA domain NIK71_04335 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NIK71_04340 PF13018 Extended Signal Peptide of Type V secretion system NIK71_04340 PF13332 Hemagglutinin repeat NIK71_04340 PF05860 haemagglutination activity domain NIK71_04340 PF04829 Pre-toxin domain with VENN motif NIK71_04355 PF07690 Major Facilitator Superfamily NIK71_04360 PF04909 Amidohydrolase NIK71_04370 PF07702 UTRA domain NIK71_04370 PF00392 Bacterial regulatory proteins, gntR family NIK71_04375 PF08450 SMP-30/Gluconolactonase/LRE-like region NIK71_04385 PF03466 LysR substrate binding domain NIK71_04385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_04405 PF07690 Major Facilitator Superfamily NIK71_04410 PF01842 ACT domain NIK71_04410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIK71_04410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIK71_04415 PF03737 Aldolase/RraA NIK71_04445 PF00529 HlyD membrane-fusion protein of T1SS NIK71_04445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIK71_04460 PF00171 Aldehyde dehydrogenase family NIK71_04465 PF00920 Dehydratase family NIK71_04475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_04475 PF03466 LysR substrate binding domain NIK71_04480 PF01370 NAD dependent epimerase/dehydratase family NIK71_04485 PF07690 Major Facilitator Superfamily NIK71_04490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIK71_04490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIK71_04495 PF06719 AraC-type transcriptional regulator N-terminus NIK71_04495 PF12833 Helix-turn-helix domain NIK71_04510 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_04510 PF00107 Zinc-binding dehydrogenase NIK71_04520 PF01032 FecCD transport family NIK71_04525 PF00005 ABC transporter NIK71_04545 PF14572 Phosphoribosyl synthetase-associated domain NIK71_04545 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIK71_04550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIK71_04580 PF13737 Transposase DDE domain NIK71_04630 PF00196 Bacterial regulatory proteins, luxR family NIK71_04635 PF01425 Amidase NIK71_04640 PF13533 Biotin-lipoyl like NIK71_04645 PF07690 Major Facilitator Superfamily NIK71_04670 PF01975 Survival protein SurE NIK71_04680 PF13291 ACT domain NIK71_04680 PF04607 Region found in RelA / SpoT proteins NIK71_04680 PF02824 TGS domain NIK71_04730 PF12146 Serine aminopeptidase, S33 NIK71_04735 PF12833 Helix-turn-helix domain NIK71_04735 PF02311 AraC-like ligand binding domain NIK71_04745 PF16527 Two-component sensor protein CpxA, periplasmic domain NIK71_04745 PF00672 HAMP domain NIK71_04745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_04745 PF00512 His Kinase A (phospho-acceptor) domain NIK71_04750 PF00486 Transcriptional regulatory protein, C terminal NIK71_04750 PF00072 Response regulator receiver domain NIK71_04755 PF00529 HlyD membrane-fusion protein of T1SS NIK71_04755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIK71_04760 PF00873 AcrB/AcrD/AcrF family NIK71_04765 PF02321 Outer membrane efflux protein NIK71_04770 PF12146 Serine aminopeptidase, S33 NIK71_04775 PF00743 Flavin-binding monooxygenase-like NIK71_04780 PF01593 Flavin containing amine oxidoreductase NIK71_04795 PF01266 FAD dependent oxidoreductase NIK71_04815 PF16970 Type-1 fimbrial protein, A NIK71_04825 PF02753 Pili assembly chaperone PapD, C-terminal domain NIK71_04825 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIK71_04830 PF13953 PapC C-terminal domain NIK71_04830 PF00577 Outer membrane usher protein NIK71_04830 PF13954 PapC N-terminal domain NIK71_04835 PF00419 Fimbrial protein NIK71_04845 PF00107 Zinc-binding dehydrogenase NIK71_04845 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_04855 PF00199 Catalase NIK71_04870 PF13091 PLD-like domain NIK71_04885 PF01244 Membrane dipeptidase (Peptidase family M19) NIK71_04890 PF04055 Radical SAM superfamily NIK71_04890 PF13186 Iron-sulfur cluster-binding domain NIK71_04895 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NIK71_04900 PF03070 TENA/THI-4/PQQC family NIK71_04905 PF12706 Beta-lactamase superfamily domain NIK71_04910 PF08042 PqqA family NIK71_04915 PF17941 Polyphosphate kinase C-terminal domain 1 NIK71_04915 PF13089 Polyphosphate kinase N-terminal domain NIK71_04915 PF02503 Polyphosphate kinase middle domain NIK71_04915 PF13090 Polyphosphate kinase C-terminal domain 2 NIK71_04920 PF00149 Calcineurin-like phosphoesterase NIK71_04930 PF00857 Isochorismatase family NIK71_04930 PF00550 Phosphopantetheine attachment site NIK71_04935 PF00106 short chain dehydrogenase NIK71_04940 PF00005 ABC transporter NIK71_04940 PF03459 TOBE domain NIK71_04945 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_04955 PF03459 TOBE domain NIK71_04960 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIK71_04960 PF00355 Rieske [2Fe-2S] domain NIK71_04965 PF00866 Ring hydroxylating beta subunit NIK71_04970 PF00970 Oxidoreductase FAD-binding domain NIK71_04970 PF00175 Oxidoreductase NAD-binding domain NIK71_04970 PF00111 2Fe-2S iron-sulfur cluster binding domain NIK71_04975 PF14525 AraC-binding-like domain NIK71_04975 PF12833 Helix-turn-helix domain NIK71_04985 PF01613 Flavin reductase like domain NIK71_05000 PF01738 Dienelactone hydrolase family NIK71_05005 PF07690 Major Facilitator Superfamily NIK71_05010 PF12833 Helix-turn-helix domain NIK71_05010 PF06719 AraC-type transcriptional regulator N-terminus NIK71_05035 PF03466 LysR substrate binding domain NIK71_05035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_05040 PF01144 Coenzyme A transferase NIK71_05045 PF01144 Coenzyme A transferase NIK71_05050 PF02667 Short chain fatty acid transporter NIK71_05055 PF02803 Thiolase, C-terminal domain NIK71_05055 PF00108 Thiolase, N-terminal domain NIK71_05060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_05060 PF03466 LysR substrate binding domain NIK71_05065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_05065 PF03466 LysR substrate binding domain NIK71_05080 PF10415 Fumarase C C-terminus NIK71_05080 PF00206 Lyase NIK71_05085 PF07715 TonB-dependent Receptor Plug Domain NIK71_05085 PF00593 TonB dependent receptor NIK71_05090 PF00083 Sugar (and other) transporter NIK71_05105 PF00005 ABC transporter NIK71_05110 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_05115 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIK71_05130 PF07702 UTRA domain NIK71_05130 PF00392 Bacterial regulatory proteins, gntR family NIK71_05140 PF02525 Flavodoxin-like fold NIK71_05145 PF01638 HxlR-like helix-turn-helix NIK71_05150 PF06445 GyrI-like small molecule binding domain NIK71_05150 PF12833 Helix-turn-helix domain NIK71_05165 PF01925 Sulfite exporter TauE/SafE NIK71_05180 PF04273 Putative phosphatase (DUF442) NIK71_05180 PF00753 Metallo-beta-lactamase superfamily NIK71_05185 PF00072 Response regulator receiver domain NIK71_05185 PF02954 Bacterial regulatory protein, Fis family NIK71_05185 PF00158 Sigma-54 interaction domain NIK71_05190 PF01062 Bestrophin, RFP-TM, chloride channel NIK71_05195 PF00107 Zinc-binding dehydrogenase NIK71_05195 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_05200 PF00106 short chain dehydrogenase NIK71_05205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIK71_05205 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_05210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIK71_05210 PF00364 Biotin-requiring enzyme NIK71_05210 PF02817 e3 binding domain NIK71_05215 PF02779 Transketolase, pyrimidine binding domain NIK71_05215 PF02780 Transketolase, C-terminal domain NIK71_05220 PF00676 Dehydrogenase E1 component NIK71_05225 PF04055 Radical SAM superfamily NIK71_05240 PF00990 Diguanylate cyclase, GGDEF domain NIK71_05240 PF08448 PAS fold NIK71_05245 PF01264 Chorismate synthase NIK71_05250 PF05175 Methyltransferase small domain NIK71_05255 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_05265 PF01434 Peptidase family M41 NIK71_05265 PF17862 AAA+ lid domain NIK71_05265 PF00004 ATPase family associated with various cellular activities (AAA) NIK71_05275 PF05166 YcgL domain NIK71_05295 PF00570 HRDC domain NIK71_05295 PF01612 3'-5' exonuclease NIK71_05300 PF13662 Toprim domain NIK71_05300 PF02132 RecR protein NIK71_05305 PF02575 YbaB/EbfC DNA-binding family NIK71_05315 PF01053 Cys/Met metabolism PLP-dependent enzyme NIK71_05320 PF00561 alpha/beta hydrolase fold NIK71_05325 PF08241 Methyltransferase domain NIK71_05355 PF01230 HIT domain NIK71_05405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIK71_05415 PF02684 Lipid-A-disaccharide synthetase NIK71_05420 PF00593 TonB dependent receptor NIK71_05420 PF07715 TonB-dependent Receptor Plug Domain NIK71_05440 PF01925 Sulfite exporter TauE/SafE NIK71_05445 PF00793 DAHP synthetase I family NIK71_05450 PF02654 Cobalamin-5-phosphate synthase NIK71_05465 PF02277 Phosphoribosyltransferase NIK71_05470 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NIK71_05480 PF13419 Haloacid dehalogenase-like hydrolase NIK71_05505 PF00593 TonB dependent receptor NIK71_05505 PF07715 TonB-dependent Receptor Plug Domain NIK71_05520 PF06276 Ferric iron reductase FhuF-like transporter NIK71_05520 PF04183 IucA / IucC family NIK71_05525 PF04183 IucA / IucC family NIK71_05525 PF06276 Ferric iron reductase FhuF-like transporter NIK71_05530 PF07690 Major Facilitator Superfamily NIK71_05535 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIK71_05540 PF06276 Ferric iron reductase FhuF-like transporter NIK71_05540 PF04183 IucA / IucC family NIK71_05545 PF04073 Aminoacyl-tRNA editing domain NIK71_05555 PF03109 ABC1 family NIK71_05560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_05560 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_05560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_05565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_05565 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_05565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_05570 PF00487 Fatty acid desaturase NIK71_05575 PF12833 Helix-turn-helix domain NIK71_05575 PF12852 Cupin NIK71_05580 PF09312 SurA N-terminal domain NIK71_05580 PF00639 PPIC-type PPIASE domain NIK71_05585 PF00216 Bacterial DNA-binding protein NIK71_05600 PF02082 Transcriptional regulator NIK71_05605 PF00266 Aminotransferase class-V NIK71_05610 PF01592 NifU-like N terminal domain NIK71_05615 PF01521 Iron-sulphur cluster biosynthesis NIK71_05620 PF00226 DnaJ domain NIK71_05620 PF07743 HSCB C-terminal oligomerisation domain NIK71_05625 PF00012 Hsp70 protein NIK71_05630 PF00111 2Fe-2S iron-sulfur cluster binding domain NIK71_05635 PF00211 Adenylate and Guanylate cyclase catalytic domain NIK71_05645 PF00271 Helicase conserved C-terminal domain NIK71_05645 PF00270 DEAD/DEAH box helicase NIK71_05645 PF03461 TRCF domain NIK71_05645 PF17757 UvrB interaction domain NIK71_05645 PF02559 CarD-like/TRCF domain NIK71_05665 PF03737 Aldolase/RraA NIK71_05670 PF13460 NAD(P)H-binding NIK71_05675 PF01649 Ribosomal protein S20 NIK71_05700 PF00005 ABC transporter NIK71_05700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIK71_05705 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_05710 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_05715 PF01432 Peptidase family M3 NIK71_05735 PF07715 TonB-dependent Receptor Plug Domain NIK71_05735 PF00593 TonB dependent receptor NIK71_05745 PF01618 MotA/TolQ/ExbB proton channel family NIK71_05750 PF02472 Biopolymer transport protein ExbD/TolR NIK71_05755 PF02472 Biopolymer transport protein ExbD/TolR NIK71_05765 PF01274 Malate synthase NIK71_05770 PF03969 AFG1-like ATPase NIK71_05780 PF00743 Flavin-binding monooxygenase-like NIK71_05790 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NIK71_05800 PF00216 Bacterial DNA-binding protein NIK71_05805 PF00575 S1 RNA binding domain NIK71_05810 PF02224 Cytidylate kinase NIK71_05820 PF14437 MafB19-like deaminase NIK71_05830 PF03167 Uracil DNA glycosylase superfamily NIK71_05840 PF03934 Type II secretion system (T2SS), protein K NIK71_05845 PF07963 Prokaryotic N-terminal methylation motif NIK71_05845 PF11612 Type II secretion system (T2SS), protein J NIK71_05850 PF02501 Type II secretion system (T2SS), protein I NIK71_05850 PF07963 Prokaryotic N-terminal methylation motif NIK71_05865 PF01026 TatD related DNase NIK71_05875 PF09115 DNA polymerase III, delta subunit, C terminal NIK71_05880 PF02348 Cytidylyltransferase NIK71_05885 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NIK71_05890 PF00005 ABC transporter NIK71_05890 PF00664 ABC transporter transmembrane region NIK71_05900 PF01618 MotA/TolQ/ExbB proton channel family NIK71_05905 PF02195 ParB-like nuclease domain NIK71_05905 PF17762 HTH domain found in ParB protein NIK71_05910 PF13614 AAA domain NIK71_05915 PF02527 rRNA small subunit methyltransferase G NIK71_05920 PF00483 Nucleotidyl transferase NIK71_05925 PF01636 Phosphotransferase enzyme family NIK71_05930 PF03968 OstA-like protein NIK71_05930 PF04453 LPS transport system D NIK71_05935 PF00639 PPIC-type PPIASE domain NIK71_05935 PF09312 SurA N-terminal domain NIK71_05940 PF01116 Fructose-bisphosphate aldolase class-II NIK71_05950 PF00162 Phosphoglycerate kinase NIK71_05960 PF02545 Maf-like protein NIK71_05965 PF08007 Cupin superfamily protein NIK71_05980 PF00375 Sodium:dicarboxylate symporter family NIK71_05985 PF06912 Protein of unknown function (DUF1275) NIK71_05990 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NIK71_05995 PF00664 ABC transporter transmembrane region NIK71_05995 PF00005 ABC transporter NIK71_06005 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIK71_06005 PF12833 Helix-turn-helix domain NIK71_06010 PF01597 Glycine cleavage H-protein NIK71_06015 PF02146 Sir2 family NIK71_06020 PF00474 Sodium:solute symporter family NIK71_06025 PF01037 Lrp/AsnC ligand binding domain NIK71_06030 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NIK71_06030 PF00171 Aldehyde dehydrogenase family NIK71_06030 PF01619 Proline dehydrogenase NIK71_06030 PF14850 DNA-binding domain of Proline dehydrogenase NIK71_06035 PF04229 GrpB protein NIK71_06040 PF05958 tRNA (Uracil-5-)-methyltransferase NIK71_06050 PF09992 Phosphodiester glycosidase NIK71_06060 PF04264 YceI-like domain NIK71_06070 PF00456 Transketolase, thiamine diphosphate binding domain NIK71_06070 PF02780 Transketolase, C-terminal domain NIK71_06070 PF02779 Transketolase, pyrimidine binding domain NIK71_06075 PF02772 S-adenosylmethionine synthetase, central domain NIK71_06075 PF00438 S-adenosylmethionine synthetase, N-terminal domain NIK71_06075 PF02773 S-adenosylmethionine synthetase, C-terminal domain NIK71_06095 PF00905 Penicillin binding protein transpeptidase domain NIK71_06110 PF02075 Crossover junction endodeoxyribonuclease RuvC NIK71_06115 PF03853 YjeF-related protein N-terminus NIK71_06115 PF01256 Carbohydrate kinase NIK71_06120 PF08331 Domain of unknown function (DUF1730) NIK71_06125 PF06968 Biotin and Thiamin Synthesis associated domain NIK71_06125 PF04055 Radical SAM superfamily NIK71_06140 PF16970 Type-1 fimbrial protein, A NIK71_06145 PF02753 Pili assembly chaperone PapD, C-terminal domain NIK71_06145 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIK71_06150 PF00577 Outer membrane usher protein NIK71_06150 PF13953 PapC C-terminal domain NIK71_06150 PF13954 PapC N-terminal domain NIK71_06170 PF00892 EamA-like transporter family NIK71_06180 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIK71_06190 PF03466 LysR substrate binding domain NIK71_06190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06210 PF00440 Bacterial regulatory proteins, tetR family NIK71_06220 PF01709 Transcriptional regulator NIK71_06230 PF01037 Lrp/AsnC ligand binding domain NIK71_06240 PF00005 ABC transporter NIK71_06245 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_06250 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_06265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_06265 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIK71_06275 PF00296 Luciferase-like monooxygenase NIK71_06280 PF03180 NLPA lipoprotein NIK71_06285 PF03180 NLPA lipoprotein NIK71_06290 PF09383 NIL domain NIK71_06290 PF00005 ABC transporter NIK71_06295 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_06300 PF06071 Protein of unknown function (DUF933) NIK71_06300 PF01926 50S ribosome-binding GTPase NIK71_06325 PF03591 AzlC protein NIK71_06330 PF05437 Branched-chain amino acid transport protein (AzlD) NIK71_06340 PF02222 ATP-grasp domain NIK71_06345 PF08335 GlnD PII-uridylyltransferase NIK71_06345 PF01966 HD domain NIK71_06345 PF01909 Nucleotidyltransferase domain NIK71_06350 PF00155 Aminotransferase class I and II NIK71_06360 PF12833 Helix-turn-helix domain NIK71_06360 PF12852 Cupin NIK71_06365 PF00255 Glutathione peroxidase NIK71_06370 PF01641 SelR domain NIK71_06375 PF00155 Aminotransferase class I and II NIK71_06380 PF00375 Sodium:dicarboxylate symporter family NIK71_06385 PF00710 Asparaginase, N-terminal NIK71_06385 PF17763 Glutaminase/Asparaginase C-terminal domain NIK71_06390 PF01336 OB-fold nucleic acid binding domain NIK71_06390 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NIK71_06390 PF14579 Helix-hairpin-helix motif NIK71_06390 PF02811 PHP domain NIK71_06390 PF07733 Bacterial DNA polymerase III alpha NTPase domain NIK71_06395 PF00588 SpoU rRNA Methylase family NIK71_06400 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_06415 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_06415 PF13192 Thioredoxin domain NIK71_06430 PF03466 LysR substrate binding domain NIK71_06430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06435 PF01758 Sodium Bile acid symporter family NIK71_06440 PF01022 Bacterial regulatory protein, arsR family NIK71_06445 PF03960 ArsC family NIK71_06455 PF01979 Amidohydrolase family NIK71_06455 PF13382 Adenine deaminase C-terminal domain NIK71_06465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06465 PF03466 LysR substrate binding domain NIK71_06475 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIK71_06480 PF01177 Asp/Glu/Hydantoin racemase NIK71_06485 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NIK71_06490 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_06495 PF00005 ABC transporter NIK71_06500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIK71_06510 PF00083 Sugar (and other) transporter NIK71_06515 PF00296 Luciferase-like monooxygenase NIK71_06520 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIK71_06520 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_06520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_06530 PF01654 Cytochrome bd terminal oxidase subunit I NIK71_06535 PF02322 Cytochrome bd terminal oxidase subunit II NIK71_06545 PF00155 Aminotransferase class I and II NIK71_06545 PF00392 Bacterial regulatory proteins, gntR family NIK71_06550 PF03466 LysR substrate binding domain NIK71_06550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06565 PF00698 Acyl transferase domain NIK71_06570 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NIK71_06580 PF01039 Carboxyl transferase domain NIK71_06585 PF06857 Malonate decarboxylase delta subunit (MdcD) NIK71_06590 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NIK71_06595 PF16957 Malonate decarboxylase, alpha subunit, transporter NIK71_06600 PF07690 Major Facilitator Superfamily NIK71_06615 PF00392 Bacterial regulatory proteins, gntR family NIK71_06615 PF00155 Aminotransferase class I and II NIK71_06620 PF04172 LrgB-like family NIK71_06625 PF03788 LrgA family NIK71_06630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06630 PF03466 LysR substrate binding domain NIK71_06635 PF14834 Glutathione S-transferase, C-terminal domain NIK71_06635 PF02798 Glutathione S-transferase, N-terminal domain NIK71_06640 PF02798 Glutathione S-transferase, N-terminal domain NIK71_06645 PF03466 LysR substrate binding domain NIK71_06645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06655 PF00581 Rhodanese-like domain NIK71_06660 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_06670 PF00266 Aminotransferase class-V NIK71_06680 PF01810 LysE type translocator NIK71_06685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06685 PF03466 LysR substrate binding domain NIK71_06695 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIK71_06700 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIK71_06705 PF00005 ABC transporter NIK71_06710 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_06715 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_06730 PF00072 Response regulator receiver domain NIK71_06735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_06735 PF00512 His Kinase A (phospho-acceptor) domain NIK71_06735 PF09308 LuxQ, periplasmic NIK71_06735 PF00072 Response regulator receiver domain NIK71_06745 PF01037 Lrp/AsnC ligand binding domain NIK71_06745 PF13404 AsnC-type helix-turn-helix domain NIK71_06755 PF00717 Peptidase S24-like NIK71_06780 PF18011 C-terminal domain found in long catalases NIK71_06780 PF00199 Catalase NIK71_06780 PF06628 Catalase-related immune-responsive NIK71_06790 PF18146 Damage-inducible protein CinA KH domain NIK71_06790 PF02464 Competence-damaged protein NIK71_06790 PF00994 Probable molybdopterin binding domain NIK71_06825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06825 PF03466 LysR substrate binding domain NIK71_06845 PF00501 AMP-binding enzyme NIK71_06845 PF13193 AMP-binding enzyme C-terminal domain NIK71_06850 PF00440 Bacterial regulatory proteins, tetR family NIK71_06855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_06855 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_06855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_06860 PF01039 Carboxyl transferase domain NIK71_06865 PF00378 Enoyl-CoA hydratase/isomerase NIK71_06870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIK71_06870 PF02785 Biotin carboxylase C-terminal domain NIK71_06870 PF00289 Biotin carboxylase, N-terminal domain NIK71_06870 PF18140 Propionyl-coenzyme A carboxylase BT domain NIK71_06870 PF00364 Biotin-requiring enzyme NIK71_06875 PF00682 HMGL-like NIK71_06880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_06880 PF03466 LysR substrate binding domain NIK71_06895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_06895 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_06895 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIK71_06895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_06905 PF07690 Major Facilitator Superfamily NIK71_06915 PF01144 Coenzyme A transferase NIK71_06920 PF01144 Coenzyme A transferase NIK71_06925 PF07690 Major Facilitator Superfamily NIK71_06930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_06930 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_06930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_06935 PF00378 Enoyl-CoA hydratase/isomerase NIK71_06945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIK71_06945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIK71_06945 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIK71_06950 PF02803 Thiolase, C-terminal domain NIK71_06950 PF00108 Thiolase, N-terminal domain NIK71_06955 PF09339 IclR helix-turn-helix domain NIK71_06960 PF07690 Major Facilitator Superfamily NIK71_06965 PF03060 Nitronate monooxygenase NIK71_06970 PF00378 Enoyl-CoA hydratase/isomerase NIK71_06975 PF09339 IclR helix-turn-helix domain NIK71_06980 PF02515 CoA-transferase family III NIK71_06985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_06985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_06985 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_06990 PF07690 Major Facilitator Superfamily NIK71_06995 PF13419 Haloacid dehalogenase-like hydrolase NIK71_07000 PF00266 Aminotransferase class-V NIK71_07005 PF01266 FAD dependent oxidoreductase NIK71_07010 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_07035 PF07702 UTRA domain NIK71_07035 PF00392 Bacterial regulatory proteins, gntR family NIK71_07040 PF01494 FAD binding domain NIK71_07045 PF01614 Bacterial transcriptional regulator NIK71_07045 PF09339 IclR helix-turn-helix domain NIK71_07050 PF02525 Flavodoxin-like fold NIK71_07055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_07055 PF03466 LysR substrate binding domain NIK71_07060 PF02627 Carboxymuconolactone decarboxylase family NIK71_07065 PF00171 Aldehyde dehydrogenase family NIK71_07075 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIK71_07085 PF00171 Aldehyde dehydrogenase family NIK71_07090 PF00296 Luciferase-like monooxygenase NIK71_07095 PF01613 Flavin reductase like domain NIK71_07100 PF12697 Alpha/beta hydrolase family NIK71_07120 PF01292 Prokaryotic cytochrome b561 NIK71_07125 PF00199 Catalase NIK71_07160 PF03061 Thioesterase superfamily NIK71_07165 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_07170 PF07848 PaaX-like protein NIK71_07170 PF08223 PaaX-like protein C-terminal domain NIK71_07175 PF00501 AMP-binding enzyme NIK71_07175 PF14535 AMP-binding enzyme C-terminal domain NIK71_07180 PF02803 Thiolase, C-terminal domain NIK71_07180 PF00108 Thiolase, N-terminal domain NIK71_07185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIK71_07185 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIK71_07185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIK71_07190 PF00378 Enoyl-CoA hydratase/isomerase NIK71_07195 PF00378 Enoyl-CoA hydratase/isomerase NIK71_07200 PF00175 Oxidoreductase NAD-binding domain NIK71_07200 PF00970 Oxidoreductase FAD-binding domain NIK71_07200 PF00111 2Fe-2S iron-sulfur cluster binding domain NIK71_07205 PF01883 Iron-sulfur cluster assembly protein NIK71_07210 PF05138 Phenylacetic acid catabolic protein NIK71_07215 PF06243 Phenylacetic acid degradation B NIK71_07220 PF05138 Phenylacetic acid catabolic protein NIK71_07225 PF01575 MaoC like domain NIK71_07225 PF00171 Aldehyde dehydrogenase family NIK71_07230 PF03313 Serine dehydratase alpha chain NIK71_07230 PF03315 Serine dehydratase beta chain NIK71_07235 PF13520 Amino acid permease NIK71_07240 PF00171 Aldehyde dehydrogenase family NIK71_07245 PF00083 Sugar (and other) transporter NIK71_07255 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_07255 PF04324 BFD-like [2Fe-2S] binding domain NIK71_07265 PF01266 FAD dependent oxidoreductase NIK71_07270 PF05544 Proline racemase NIK71_07275 PF00392 Bacterial regulatory proteins, gntR family NIK71_07285 PF00701 Dihydrodipicolinate synthetase family NIK71_07295 PF09278 MerR, DNA binding NIK71_07295 PF00376 MerR family regulatory protein NIK71_07315 PF00005 ABC transporter NIK71_07320 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIK71_07325 PF01425 Amidase NIK71_07330 PF08753 NikR C terminal nickel binding domain NIK71_07330 PF01402 Ribbon-helix-helix protein, copG family NIK71_07350 PF02525 Flavodoxin-like fold NIK71_07355 PF02785 Biotin carboxylase C-terminal domain NIK71_07355 PF00289 Biotin carboxylase, N-terminal domain NIK71_07355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIK71_07370 PF00107 Zinc-binding dehydrogenase NIK71_07370 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_07370 PF13823 Alcohol dehydrogenase GroES-associated NIK71_07380 PF00440 Bacterial regulatory proteins, tetR family NIK71_07400 PF00654 Voltage gated chloride channel NIK71_07405 PF02785 Biotin carboxylase C-terminal domain NIK71_07405 PF00289 Biotin carboxylase, N-terminal domain NIK71_07405 PF00364 Biotin-requiring enzyme NIK71_07405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIK71_07415 PF07286 Protein of unknown function (DUF1445) NIK71_07420 PF03746 LamB/YcsF family NIK71_07425 PF01566 Natural resistance-associated macrophage protein NIK71_07430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_07430 PF03466 LysR substrate binding domain NIK71_07445 PF03527 RHS protein NIK71_07445 PF05593 RHS Repeat NIK71_07450 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIK71_07450 PF04717 Type VI secretion system, phage-baseplate injector NIK71_07450 PF13296 Putative type VI secretion system Rhs element Vgr NIK71_07460 PF13419 Haloacid dehalogenase-like hydrolase NIK71_07480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIK71_07480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIK71_07500 PF07690 Major Facilitator Superfamily NIK71_07515 PF03279 Bacterial lipid A biosynthesis acyltransferase NIK71_07520 PF03707 Bacterial signalling protein N terminal repeat NIK71_07520 PF00990 Diguanylate cyclase, GGDEF domain NIK71_07520 PF00563 EAL domain NIK71_07525 PF00892 EamA-like transporter family NIK71_07530 PF01037 Lrp/AsnC ligand binding domain NIK71_07535 PF05192 MutS domain III NIK71_07535 PF05188 MutS domain II NIK71_07535 PF05190 MutS family domain IV NIK71_07535 PF00488 MutS domain V NIK71_07535 PF01624 MutS domain I NIK71_07545 PF00037 4Fe-4S binding domain NIK71_07545 PF11953 Domain of unknown function (DUF3470) NIK71_07555 PF01596 O-methyltransferase NIK71_07565 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_07570 PF01205 Uncharacterized protein family UPF0029 NIK71_07580 PF00664 ABC transporter transmembrane region NIK71_07580 PF00005 ABC transporter NIK71_07580 PF03412 Peptidase C39 family NIK71_07585 PF02321 Outer membrane efflux protein NIK71_07590 PF12399 Branched-chain amino acid ATP-binding cassette transporter NIK71_07590 PF00005 ABC transporter NIK71_07595 PF03968 OstA-like protein NIK71_07610 PF00571 CBS domain NIK71_07610 PF01380 SIS domain NIK71_07615 PF09190 DALR domain NIK71_07615 PF01406 tRNA synthetases class I (C) catalytic domain NIK71_07630 PF13737 Transposase DDE domain NIK71_07645 PF01638 HxlR-like helix-turn-helix NIK71_07650 PF07690 Major Facilitator Superfamily NIK71_07675 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIK71_07675 PF03807 NADP oxidoreductase coenzyme F420-dependent NIK71_07685 PF00313 'Cold-shock' DNA-binding domain NIK71_07690 PF01810 LysE type translocator NIK71_07720 PF02601 Exonuclease VII, large subunit NIK71_07720 PF13742 OB-fold nucleic acid binding domain NIK71_07755 PF00376 MerR family regulatory protein NIK71_07755 PF09278 MerR, DNA binding NIK71_07760 PF00403 Heavy-metal-associated domain NIK71_07765 PF00403 Heavy-metal-associated domain NIK71_07770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_07770 PF03466 LysR substrate binding domain NIK71_07780 PF00355 Rieske [2Fe-2S] domain NIK71_07780 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIK71_07785 PF00866 Ring hydroxylating beta subunit NIK71_07790 PF00175 Oxidoreductase NAD-binding domain NIK71_07790 PF00111 2Fe-2S iron-sulfur cluster binding domain NIK71_07790 PF00970 Oxidoreductase FAD-binding domain NIK71_07795 PF00106 short chain dehydrogenase NIK71_07800 PF03594 Benzoate membrane transport protein NIK71_07805 PF07690 Major Facilitator Superfamily NIK71_07815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NIK71_07815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NIK71_07820 PF00271 Helicase conserved C-terminal domain NIK71_07820 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NIK71_07820 PF04408 Helicase associated domain (HA2) NIK71_07820 PF11898 Domain of unknown function (DUF3418) NIK71_07820 PF00270 DEAD/DEAH box helicase NIK71_07825 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIK71_07825 PF00578 AhpC/TSA family NIK71_07845 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_07845 PF13192 Thioredoxin domain NIK71_07855 PF00043 Glutathione S-transferase, C-terminal domain NIK71_07855 PF02798 Glutathione S-transferase, N-terminal domain NIK71_07865 PF02390 Putative methyltransferase NIK71_07870 PF00043 Glutathione S-transferase, C-terminal domain NIK71_07870 PF13417 Glutathione S-transferase, N-terminal domain NIK71_07880 PF00691 OmpA family NIK71_07880 PF13488 Glycine zipper NIK71_07885 PF01979 Amidohydrolase family NIK71_07890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIK71_07890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIK71_07900 PF01170 Putative RNA methylase family UPF0020 NIK71_07900 PF10672 S-adenosylmethionine-dependent methyltransferase NIK71_07900 PF02926 THUMP domain NIK71_07915 PF07724 AAA domain (Cdc48 subfamily) NIK71_07915 PF17871 AAA lid domain NIK71_07915 PF02861 Clp amino terminal domain, pathogenicity island component NIK71_07915 PF10431 C-terminal, D2-small domain, of ClpB protein NIK71_07915 PF00004 ATPase family associated with various cellular activities (AAA) NIK71_07930 PF02566 OsmC-like protein NIK71_07940 PF00027 Cyclic nucleotide-binding domain NIK71_07940 PF13545 Crp-like helix-turn-helix domain NIK71_07950 PF00248 Aldo/keto reductase family NIK71_07965 PF00709 Adenylosuccinate synthetase NIK71_07970 PF13393 Histidyl-tRNA synthetase NIK71_07975 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIK71_07975 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIK71_07980 PF02272 DHHA1 domain NIK71_07980 PF01411 tRNA synthetases class II (A) NIK71_07980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIK71_07985 PF00696 Amino acid kinase family NIK71_07985 PF01842 ACT domain NIK71_07985 PF13840 ACT domain NIK71_07990 PF02599 Global regulator protein family NIK71_07995 PF01351 Ribonuclease HII NIK71_08005 PF01292 Prokaryotic cytochrome b561 NIK71_08010 PF00962 Adenosine/AMP deaminase NIK71_08015 PF00860 Permease family NIK71_08025 PF00743 Flavin-binding monooxygenase-like NIK71_08030 PF00106 short chain dehydrogenase NIK71_08040 PF02678 Pirin NIK71_08040 PF17954 Quercetinase C-terminal cupin domain NIK71_08045 PF17932 Tetracyclin repressor-like, C-terminal domain NIK71_08045 PF00440 Bacterial regulatory proteins, tetR family NIK71_08055 PF00106 short chain dehydrogenase NIK71_08065 PF13610 DDE domain NIK71_08070 PF03527 RHS protein NIK71_08070 PF05593 RHS Repeat NIK71_08075 PF13296 Putative type VI secretion system Rhs element Vgr NIK71_08075 PF04717 Type VI secretion system, phage-baseplate injector NIK71_08075 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIK71_08095 PF03180 NLPA lipoprotein NIK71_08100 PF05987 Bacterial protein of unknown function (DUF898) NIK71_08115 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_08115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIK71_08120 PF00764 Arginosuccinate synthase NIK71_08125 PF00990 Diguanylate cyclase, GGDEF domain NIK71_08125 PF00563 EAL domain NIK71_08125 PF01590 GAF domain NIK71_08125 PF00360 Phytochrome region NIK71_08130 PF01979 Amidohydrolase family NIK71_08135 PF00929 Exonuclease NIK71_08145 PF00593 TonB dependent receptor NIK71_08145 PF07715 TonB-dependent Receptor Plug Domain NIK71_08150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIK71_08150 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_08155 PF00005 ABC transporter NIK71_08155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIK71_08160 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_08160 PF12911 N-terminal TM domain of oligopeptide transport permease C NIK71_08165 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_08170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NIK71_08175 PF01464 Transglycosylase SLT domain NIK71_08175 PF01464 Transglycosylase SLT domain NIK71_08175 PF01476 LysM domain NIK71_08175 PF01476 LysM domain NIK71_08180 PF00929 Exonuclease NIK71_08190 PF00293 NUDIX domain NIK71_08190 PF09297 NADH pyrophosphatase zinc ribbon domain NIK71_08200 PF04972 BON domain NIK71_08205 PF02021 Uncharacterised protein family UPF0102 NIK71_08210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIK71_08220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_08220 PF03466 LysR substrate binding domain NIK71_08225 PF01810 LysE type translocator NIK71_08235 PF13411 MerR HTH family regulatory protein NIK71_08245 PF01494 FAD binding domain NIK71_08250 PF01494 FAD binding domain NIK71_08255 PF05195 Aminopeptidase P, N-terminal domain NIK71_08255 PF00557 Metallopeptidase family M24 NIK71_08295 PF00884 Sulfatase NIK71_08295 PF08019 Phosphoethanolamine transferase EptA/EptB NIK71_08340 PF01551 Peptidase family M23 NIK71_08340 PF08525 Opacity-associated protein A N-terminal motif NIK71_08340 PF01476 LysM domain NIK71_08470 PF13610 DDE domain NIK71_08475 PF07091 Ribosomal RNA methyltransferase (FmrO) NIK71_08490 PF00809 Pterin binding enzyme NIK71_08495 PF00893 Small Multidrug Resistance protein NIK71_08505 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_08520 PF13610 DDE domain NIK71_08530 PF07995 Glucose / Sorbosone dehydrogenase NIK71_08535 PF00892 EamA-like transporter family NIK71_08540 PF01177 Asp/Glu/Hydantoin racemase NIK71_08550 PF02470 MlaD protein NIK71_08555 PF04403 Paraquat-inducible protein A NIK71_08565 PF06826 Predicted Permease Membrane Region NIK71_08565 PF02080 TrkA-C domain NIK71_08570 PF00155 Aminotransferase class I and II NIK71_08595 PF00083 Sugar (and other) transporter NIK71_08595 PF08946 Osmosensory transporter coiled coil NIK71_08645 PF07729 FCD domain NIK71_08645 PF00392 Bacterial regulatory proteins, gntR family NIK71_08655 PF03616 Sodium/glutamate symporter NIK71_08660 PF00561 alpha/beta hydrolase fold NIK71_08685 PF04076 Bacterial OB fold (BOF) protein NIK71_08715 PF00324 Amino acid permease NIK71_08720 PF00171 Aldehyde dehydrogenase family NIK71_08725 PF00202 Aminotransferase class-III NIK71_08730 PF03466 LysR substrate binding domain NIK71_08730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_08755 PF00069 Protein kinase domain NIK71_08775 PF00814 Glycoprotease family NIK71_08780 PF01165 Ribosomal protein S21 NIK71_08785 PF09424 Yqey-like protein NIK71_08790 PF01435 Peptidase family M48 NIK71_08795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIK71_08795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIK71_08810 PF00156 Phosphoribosyl transferase domain NIK71_08815 PF02674 Colicin V production protein NIK71_08820 PF01180 Dihydroorotate dehydrogenase NIK71_08840 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NIK71_08840 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NIK71_08845 PF00881 Nitroreductase family NIK71_08855 PF00270 DEAD/DEAH box helicase NIK71_08855 PF00271 Helicase conserved C-terminal domain NIK71_08860 PF00313 'Cold-shock' DNA-binding domain NIK71_08875 PF04542 Sigma-70 region 2 NIK71_08875 PF04545 Sigma-70, region 4 NIK71_08875 PF00140 Sigma-70 factor, region 1.2 NIK71_08880 PF04241 Protein of unknown function (DUF423) NIK71_08890 PF05690 Thiazole biosynthesis protein ThiG NIK71_08900 PF03883 Peroxide stress protein YaaA NIK71_08910 PF12706 Beta-lactamase superfamily domain NIK71_08915 PF07687 Peptidase dimerisation domain NIK71_08915 PF01546 Peptidase family M20/M25/M40 NIK71_08925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIK71_08930 PF01817 Chorismate mutase type II NIK71_08930 PF01842 ACT domain NIK71_08930 PF00800 Prephenate dehydratase NIK71_08935 PF00756 Putative esterase NIK71_08940 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_08940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_08940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_08945 PF00375 Sodium:dicarboxylate symporter family NIK71_08950 PF02885 Glycosyl transferase family, helical bundle domain NIK71_08950 PF00591 Glycosyl transferase family, a/b domain NIK71_08955 PF07023 Protein of unknown function (DUF1315) NIK71_08960 PF01513 ATP-NAD kinase NIK71_08965 PF14814 Bifunctional transglycosylase second domain NIK71_08965 PF00912 Transglycosylase NIK71_08965 PF00905 Penicillin binding protein transpeptidase domain NIK71_08975 PF00293 NUDIX domain NIK71_08985 PF00512 His Kinase A (phospho-acceptor) domain NIK71_08985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_08985 PF08521 Two-component sensor kinase N-terminal NIK71_08990 PF00486 Transcriptional regulatory protein, C terminal NIK71_08990 PF00072 Response regulator receiver domain NIK71_09000 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIK71_09000 PF00437 Type II/IV secretion system protein NIK71_09010 PF18389 TrmO C-terminal domain NIK71_09010 PF01980 tRNA-methyltransferase O NIK71_09015 PF00175 Oxidoreductase NAD-binding domain NIK71_09015 PF00970 Oxidoreductase FAD-binding domain NIK71_09020 PF02567 Phenazine biosynthesis-like protein NIK71_09025 PF00392 Bacterial regulatory proteins, gntR family NIK71_09025 PF00155 Aminotransferase class I and II NIK71_09030 PF16325 Peptidase family U32 C-terminal domain NIK71_09030 PF01136 Peptidase family U32 NIK71_09035 PF00037 4Fe-4S binding domain NIK71_09040 PF00893 Small Multidrug Resistance protein NIK71_09045 PF00005 ABC transporter NIK71_09050 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_09055 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_09060 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIK71_09065 PF03466 LysR substrate binding domain NIK71_09065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_09070 PF13533 Biotin-lipoyl like NIK71_09075 PF00873 AcrB/AcrD/AcrF family NIK71_09080 PF02321 Outer membrane efflux protein NIK71_09085 PF00464 Serine hydroxymethyltransferase NIK71_09115 PF00005 ABC transporter NIK71_09120 PF01061 ABC-2 type transporter NIK71_09125 PF14489 QueF-like protein NIK71_09125 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NIK71_09135 PF01098 Cell cycle protein NIK71_09140 PF13406 Transglycosylase SLT domain NIK71_09145 PF03330 Lytic transglycolase NIK71_09145 PF05036 Sporulation related domain NIK71_09165 PF12833 Helix-turn-helix domain NIK71_09175 PF00889 Elongation factor TS NIK71_09180 PF00318 Ribosomal protein S2 NIK71_09185 PF00557 Metallopeptidase family M24 NIK71_09195 PF07690 Major Facilitator Superfamily NIK71_09205 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_09205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIK71_09210 PF04055 Radical SAM superfamily NIK71_09215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_09215 PF09317 Domain of unknown function (DUF1974) NIK71_09215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_09230 PF05221 S-adenosyl-L-homocysteine hydrolase NIK71_09230 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NIK71_09235 PF02219 Methylenetetrahydrofolate reductase NIK71_09240 PF04452 RNA methyltransferase NIK71_09245 PF00563 EAL domain NIK71_09245 PF00990 Diguanylate cyclase, GGDEF domain NIK71_09245 PF03707 Bacterial signalling protein N terminal repeat NIK71_09250 PF00390 Malic enzyme, N-terminal domain NIK71_09250 PF03949 Malic enzyme, NAD binding domain NIK71_09250 PF01515 Phosphate acetyl/butaryl transferase NIK71_09255 PF12627 Probable RNA and SrmB- binding site of polymerase A NIK71_09255 PF01743 Poly A polymerase head domain NIK71_09260 PF13180 PDZ domain NIK71_09265 PF01784 NIF3 (NGG1p interacting factor 3) NIK71_09270 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NIK71_09270 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NIK71_09305 PF01040 UbiA prenyltransferase family NIK71_09310 PF04345 Chorismate lyase NIK71_09315 PF00120 Glutamine synthetase, catalytic domain NIK71_09315 PF03951 Glutamine synthetase, beta-Grasp domain NIK71_09320 PF00854 POT family NIK71_09330 PF13356 Arm DNA-binding domain NIK71_09330 PF00589 Phage integrase family NIK71_09385 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system NIK71_09610 PF01695 IstB-like ATP binding protein NIK71_09655 PF02384 N-6 DNA Methylase NIK71_09655 PF12161 HsdM N-terminal domain NIK71_09770 PF08525 Opacity-associated protein A N-terminal motif NIK71_09770 PF01551 Peptidase family M23 NIK71_09770 PF01476 LysM domain NIK71_09985 PF01555 DNA methylase NIK71_10015 PF01555 DNA methylase NIK71_10105 PF00117 Glutamine amidotransferase class-I NIK71_10110 PF11838 ERAP1-like C-terminal domain NIK71_10110 PF01433 Peptidase family M1 domain NIK71_10115 PF07715 TonB-dependent Receptor Plug Domain NIK71_10115 PF00593 TonB dependent receptor NIK71_10120 PF00591 Glycosyl transferase family, a/b domain NIK71_10120 PF02885 Glycosyl transferase family, helical bundle domain NIK71_10125 PF00218 Indole-3-glycerol phosphate synthase NIK71_10140 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NIK71_10140 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NIK71_10145 PF01799 [2Fe-2S] binding domain NIK71_10145 PF00111 2Fe-2S iron-sulfur cluster binding domain NIK71_10150 PF01227 GTP cyclohydrolase I NIK71_10160 PF00144 Beta-lactamase NIK71_10175 PF05675 Protein of unknown function (DUF817) NIK71_10180 PF01208 Uroporphyrinogen decarboxylase (URO-D) NIK71_10190 PF00425 chorismate binding enzyme NIK71_10200 PF00975 Thioesterase domain NIK71_10205 PF00005 ABC transporter NIK71_10210 PF00005 ABC transporter NIK71_10220 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIK71_10225 PF00857 Isochorismatase family NIK71_10225 PF00550 Phosphopantetheine attachment site NIK71_10230 PF00501 AMP-binding enzyme NIK71_10230 PF13193 AMP-binding enzyme C-terminal domain NIK71_10235 PF00550 Phosphopantetheine attachment site NIK71_10235 PF00668 Condensation domain NIK71_10235 PF00501 AMP-binding enzyme NIK71_10240 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIK71_10245 PF07715 TonB-dependent Receptor Plug Domain NIK71_10245 PF00593 TonB dependent receptor NIK71_10250 PF01497 Periplasmic binding protein NIK71_10255 PF00005 ABC transporter NIK71_10260 PF01032 FecCD transport family NIK71_10265 PF01032 FecCD transport family NIK71_10270 PF00550 Phosphopantetheine attachment site NIK71_10270 PF00668 Condensation domain NIK71_10270 PF13193 AMP-binding enzyme C-terminal domain NIK71_10270 PF00501 AMP-binding enzyme NIK71_10270 PF00975 Thioesterase domain NIK71_10275 PF13193 AMP-binding enzyme C-terminal domain NIK71_10275 PF00668 Condensation domain NIK71_10275 PF00550 Phosphopantetheine attachment site NIK71_10275 PF00501 AMP-binding enzyme NIK71_10285 PF13309 HTH domain NIK71_10285 PF08348 YheO-like PAS domain NIK71_10325 PF00440 Bacterial regulatory proteins, tetR family NIK71_10330 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_10330 PF00698 Acyl transferase domain NIK71_10330 PF08990 Erythronolide synthase docking NIK71_10330 PF16197 Ketoacyl-synthetase C-terminal extension NIK71_10330 PF14765 Polyketide synthase dehydratase NIK71_10330 PF00550 Phosphopantetheine attachment site NIK71_10330 PF09277 Erythronolide synthase, docking NIK71_10330 PF02801 Beta-ketoacyl synthase, C-terminal domain NIK71_10330 PF00109 Beta-ketoacyl synthase, N-terminal domain NIK71_10330 PF08659 KR domain NIK71_10335 PF13378 Enolase C-terminal domain-like NIK71_10335 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIK71_10340 PF00083 Sugar (and other) transporter NIK71_10345 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NIK71_10355 PF00892 EamA-like transporter family NIK71_10375 PF01266 FAD dependent oxidoreductase NIK71_10375 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIK71_10380 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_10380 PF18113 Rubredoxin binding C-terminal domain NIK71_10390 PF00171 Aldehyde dehydrogenase family NIK71_10395 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIK71_10395 PF00355 Rieske [2Fe-2S] domain NIK71_10400 PF02028 BCCT, betaine/carnitine/choline family transporter NIK71_10405 PF02028 BCCT, betaine/carnitine/choline family transporter NIK71_10410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_10410 PF03466 LysR substrate binding domain NIK71_10415 PF00324 Amino acid permease NIK71_10420 PF00171 Aldehyde dehydrogenase family NIK71_10435 PF06018 CodY GAF-like domain NIK71_10435 PF17853 GGDEF-like domain NIK71_10435 PF13556 PucR C-terminal helix-turn-helix domain NIK71_10470 PF04328 Selenoprotein, putative NIK71_10475 PF02554 Carbon starvation protein CstA NIK71_10475 PF13722 5TM C-terminal transporter carbon starvation CstA NIK71_10480 PF01132 Elongation factor P (EF-P) OB domain NIK71_10480 PF08207 Elongation factor P (EF-P) KOW-like domain NIK71_10480 PF09285 Elongation factor P, C-terminal NIK71_10485 PF04055 Radical SAM superfamily NIK71_10500 PF01197 Ribosomal protein L31 NIK71_10505 PF13593 SBF-like CPA transporter family (DUF4137) NIK71_10510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIK71_10515 PF07690 Major Facilitator Superfamily NIK71_10520 PF13654 AAA domain NIK71_10520 PF05362 Lon protease (S16) C-terminal proteolytic domain NIK71_10525 PF03466 LysR substrate binding domain NIK71_10525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_10530 PF01476 LysM domain NIK71_10530 PF01551 Peptidase family M23 NIK71_10535 PF01975 Survival protein SurE NIK71_10550 PF07943 Penicillin-binding protein 5, C-terminal domain NIK71_10550 PF00768 D-alanyl-D-alanine carboxypeptidase NIK71_10555 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_10560 PF13344 Haloacid dehalogenase-like hydrolase NIK71_10560 PF00293 NUDIX domain NIK71_10570 PF04356 Protein of unknown function (DUF489) NIK71_10575 PF00206 Lyase NIK71_10575 PF08328 Adenylosuccinate lyase C-terminal NIK71_10590 PF01343 Peptidase family S49 NIK71_10590 PF08496 Peptidase family S49 N-terminal NIK71_10595 PF00005 ABC transporter NIK71_10600 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_10605 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_10610 PF12849 PBP superfamily domain NIK71_10615 PF00324 Amino acid permease NIK71_10620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIK71_10620 PF00205 Thiamine pyrophosphate enzyme, central domain NIK71_10620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIK71_10625 PF01037 Lrp/AsnC ligand binding domain NIK71_10630 PF00171 Aldehyde dehydrogenase family NIK71_10635 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIK71_10640 PF00202 Aminotransferase class-III NIK71_10650 PF17754 MftR C-terminal domain NIK71_10650 PF00440 Bacterial regulatory proteins, tetR family NIK71_10660 PF00487 Fatty acid desaturase NIK71_10665 PF00970 Oxidoreductase FAD-binding domain NIK71_10665 PF00111 2Fe-2S iron-sulfur cluster binding domain NIK71_10665 PF00175 Oxidoreductase NAD-binding domain NIK71_10670 PF00440 Bacterial regulatory proteins, tetR family NIK71_10680 PF12137 RNA polymerase recycling family C-terminal NIK71_10680 PF00271 Helicase conserved C-terminal domain NIK71_10680 PF18337 RapA N-terminal Tudor like domain NIK71_10680 PF00176 SNF2 family N-terminal domain NIK71_10680 PF18339 RapA N-terminal Tudor like domain 1 NIK71_10685 PF00849 RNA pseudouridylate synthase NIK71_10695 PF00202 Aminotransferase class-III NIK71_10700 PF02581 Thiamine monophosphate synthase NIK71_10725 PF00675 Insulinase (Peptidase family M16) NIK71_10725 PF05193 Peptidase M16 inactive domain NIK71_10730 PF02567 Phenazine biosynthesis-like protein NIK71_10735 PF00375 Sodium:dicarboxylate symporter family NIK71_10740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_10740 PF03466 LysR substrate binding domain NIK71_10745 PF06779 Uncharacterised MFS-type transporter YbfB NIK71_10765 PF00180 Isocitrate/isopropylmalate dehydrogenase NIK71_10770 PF00849 RNA pseudouridylate synthase NIK71_10775 PF03971 Monomeric isocitrate dehydrogenase NIK71_10785 PF07943 Penicillin-binding protein 5, C-terminal domain NIK71_10785 PF00768 D-alanyl-D-alanine carboxypeptidase NIK71_10790 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_10795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIK71_10800 PF03441 FAD binding domain of DNA photolyase NIK71_10800 PF00875 DNA photolyase NIK71_10830 PF02350 UDP-N-acetylglucosamine 2-epimerase NIK71_10845 PF03060 Nitronate monooxygenase NIK71_10850 PF01207 Dihydrouridine synthase (Dus) NIK71_10855 PF07759 Protein of unknown function (DUF1615) NIK71_10865 PF00696 Amino acid kinase family NIK71_10865 PF01472 PUA domain NIK71_10870 PF01018 GTP1/OBG NIK71_10870 PF01926 50S ribosome-binding GTPase NIK71_10885 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIK71_10885 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIK71_10890 PF00892 EamA-like transporter family NIK71_10900 PF00271 Helicase conserved C-terminal domain NIK71_10900 PF17757 UvrB interaction domain NIK71_10900 PF12344 Ultra-violet resistance protein B NIK71_10900 PF02151 UvrB/uvrC motif NIK71_10900 PF04851 Type III restriction enzyme, res subunit NIK71_10910 PF00990 Diguanylate cyclase, GGDEF domain NIK71_10910 PF17151 Periplasmic sensor domain NIK71_10920 PF00155 Aminotransferase class I and II NIK71_10950 PF00106 short chain dehydrogenase NIK71_10955 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NIK71_10960 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NIK71_10965 PF11967 Recombination protein O N terminal NIK71_10965 PF02565 Recombination protein O C terminal NIK71_10975 PF07650 KH domain NIK71_10975 PF01926 50S ribosome-binding GTPase NIK71_10980 PF00035 Double-stranded RNA binding motif NIK71_10980 PF14622 Ribonuclease-III-like NIK71_10990 PF10502 Signal peptidase, peptidase S26 NIK71_10995 PF00679 Elongation factor G C-terminus NIK71_10995 PF00009 Elongation factor Tu GTP binding domain NIK71_10995 PF06421 GTP-binding protein LepA C-terminus NIK71_10995 PF03144 Elongation factor Tu domain 2 NIK71_11005 PF13180 PDZ domain NIK71_11010 PF02910 Fumarate reductase flavoprotein C-term NIK71_11010 PF00890 FAD binding domain NIK71_11020 PF02223 Thymidylate kinase NIK71_11025 PF02618 YceG-like family NIK71_11030 PF01063 Amino-transferase class IV NIK71_11045 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_11050 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_11055 PF12857 TOBE-like domain NIK71_11055 PF00005 ABC transporter NIK71_11060 PF03466 LysR substrate binding domain NIK71_11060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_11070 PF14602 Hexapeptide repeat of succinyl-transferase NIK71_11070 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_11070 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NIK71_11080 PF06508 Queuosine biosynthesis protein QueC NIK71_11095 PF00578 AhpC/TSA family NIK71_11105 PF00293 NUDIX domain NIK71_11105 PF01467 Cytidylyltransferase-like NIK71_11110 PF00378 Enoyl-CoA hydratase/isomerase NIK71_11115 PF01784 NIF3 (NGG1p interacting factor 3) NIK71_11125 PF07690 Major Facilitator Superfamily NIK71_11130 PF02769 AIR synthase related protein, C-terminal domain NIK71_11130 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NIK71_11130 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NIK71_11135 PF01966 HD domain NIK71_11140 PF01330 RuvA N terminal domain NIK71_11140 PF07499 RuvA, C-terminal domain NIK71_11145 PF05491 RuvB C-terminal winged helix domain NIK71_11145 PF05496 Holliday junction DNA helicase RuvB P-loop domain NIK71_11145 PF17864 RuvB AAA lid domain NIK71_11150 PF07687 Peptidase dimerisation domain NIK71_11150 PF01546 Peptidase family M20/M25/M40 NIK71_11155 PF03061 Thioesterase superfamily NIK71_11160 PF01618 MotA/TolQ/ExbB proton channel family NIK71_11165 PF02472 Biopolymer transport protein ExbD/TolR NIK71_11175 PF07676 WD40-like Beta Propeller Repeat NIK71_11175 PF04052 TolB amino-terminal domain NIK71_11180 PF00691 OmpA family NIK71_11190 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NIK71_11195 PF00588 SpoU rRNA Methylase family NIK71_11195 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIK71_11230 PF00308 Bacterial dnaA protein NIK71_11230 PF08299 Bacterial dnaA protein helix-turn-helix NIK71_11230 PF11638 DnaA N-terminal domain NIK71_11235 PF01594 AI-2E family transporter NIK71_11240 PF02769 AIR synthase related protein, C-terminal domain NIK71_11240 PF00586 AIR synthase related protein, N-terminal domain NIK71_11245 PF00551 Formyl transferase NIK71_11250 PF12697 Alpha/beta hydrolase family NIK71_11255 PF06965 Na+/H+ antiporter 1 NIK71_11255 PF01343 Peptidase family S49 NIK71_11265 PF03772 Competence protein NIK71_11265 PF13567 Domain of unknown function (DUF4131) NIK71_11265 PF00753 Metallo-beta-lactamase superfamily NIK71_11270 PF00005 ABC transporter NIK71_11275 PF02687 FtsX-like permease family NIK71_11275 PF12704 MacB-like periplasmic core domain NIK71_11285 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NIK71_11300 PF00266 Aminotransferase class-V NIK71_11310 PF13533 Biotin-lipoyl like NIK71_11330 PF00535 Glycosyl transferase family 2 NIK71_11345 PF03989 DNA gyrase C-terminal domain, beta-propeller NIK71_11345 PF00521 DNA gyrase/topoisomerase IV, subunit A NIK71_11350 PF01012 Electron transfer flavoprotein domain NIK71_11350 PF00766 Electron transfer flavoprotein FAD-binding domain NIK71_11355 PF01012 Electron transfer flavoprotein domain NIK71_11360 PF02899 Phage integrase, N-terminal SAM-like domain NIK71_11360 PF00589 Phage integrase family NIK71_11365 PF01810 LysE type translocator NIK71_11370 PF01678 Diaminopimelate epimerase NIK71_11375 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NIK71_11375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NIK71_11385 PF00324 Amino acid permease NIK71_11390 PF18073 Rubredoxin metal binding domain NIK71_11400 PF00152 tRNA synthetases class II (D, K and N) NIK71_11405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIK71_11405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIK71_11405 PF11890 Domain of unknown function (DUF3410) NIK71_11410 PF06803 Protein of unknown function (DUF1232) NIK71_11415 PF02634 FdhD/NarQ family NIK71_11420 PF00384 Molybdopterin oxidoreductase NIK71_11425 PF02595 Glycerate kinase family NIK71_11440 PF00881 Nitroreductase family NIK71_11535 PF10124 Mu-like prophage major head subunit gpT NIK71_11550 PF05069 Phage virion morphogenesis family NIK71_11555 PF04233 Phage Mu protein F like protein NIK71_11560 PF06074 Protein of unknown function (DUF935) NIK71_11575 PF03237 Terminase-like family NIK71_11610 PF10502 Signal peptidase, peptidase S26 NIK71_11640 PF13401 AAA domain NIK71_11640 PF01471 Putative peptidoglycan binding domain NIK71_11665 PF00216 Bacterial DNA-binding protein NIK71_11720 PF00668 Condensation domain NIK71_11720 PF00550 Phosphopantetheine attachment site NIK71_11720 PF00975 Thioesterase domain NIK71_11720 PF13193 AMP-binding enzyme C-terminal domain NIK71_11720 PF00501 AMP-binding enzyme NIK71_11735 PF03449 Transcription elongation factor, N-terminal NIK71_11735 PF01272 Transcription elongation factor, GreA/GreB, C-term NIK71_11740 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIK71_11740 PF01464 Transglycosylase SLT domain NIK71_11750 PF01171 PP-loop family NIK71_11755 PF01464 Transglycosylase SLT domain NIK71_11760 PF01435 Peptidase family M48 NIK71_11770 PF00873 AcrB/AcrD/AcrF family NIK71_11775 PF03009 Glycerophosphoryl diester phosphodiesterase family NIK71_11785 PF01219 Prokaryotic diacylglycerol kinase NIK71_11790 PF00118 TCP-1/cpn60 chaperonin family NIK71_11795 PF00166 Chaperonin 10 Kd subunit NIK71_11805 PF00149 Calcineurin-like phosphoesterase NIK71_11810 PF00781 Diacylglycerol kinase catalytic domain NIK71_11815 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NIK71_11815 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NIK71_11820 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NIK71_11820 PF01266 FAD dependent oxidoreductase NIK71_11825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NIK71_11825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NIK71_11830 PF00083 Sugar (and other) transporter NIK71_11845 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NIK71_11845 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NIK71_11860 PF16655 PhoD-like phosphatase, N-terminal domain NIK71_11860 PF09423 PhoD-like phosphatase NIK71_11880 PF00809 Pterin binding enzyme NIK71_11885 PF00004 ATPase family associated with various cellular activities (AAA) NIK71_11885 PF17862 AAA+ lid domain NIK71_11885 PF06480 FtsH Extracellular NIK71_11885 PF01434 Peptidase family M41 NIK71_11890 PF01728 FtsJ-like methyltransferase NIK71_11895 PF01985 CRS1 / YhbY (CRM) domain NIK71_11910 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NIK71_11910 PF00117 Glutamine amidotransferase class-I NIK71_11915 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NIK71_11915 PF02142 MGS-like domain NIK71_11915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIK71_11920 PF01272 Transcription elongation factor, GreA/GreB, C-term NIK71_11920 PF03449 Transcription elongation factor, N-terminal NIK71_11925 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_11930 PF00582 Universal stress protein family NIK71_11935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIK71_11945 PF09587 Bacterial capsule synthesis protein PGA_cap NIK71_11960 PF00999 Sodium/hydrogen exchanger family NIK71_11965 PF04228 Putative neutral zinc metallopeptidase NIK71_11970 PF05661 Protein of unknown function (DUF808) NIK71_11975 PF00579 tRNA synthetases class I (W and Y) NIK71_11980 PF02629 CoA binding domain NIK71_11980 PF00549 CoA-ligase NIK71_11985 PF08442 ATP-grasp domain NIK71_11985 PF00549 CoA-ligase NIK71_11990 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_11990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIK71_11995 PF00364 Biotin-requiring enzyme NIK71_11995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIK71_11995 PF02817 e3 binding domain NIK71_12000 PF16078 2-oxoglutarate dehydrogenase N-terminus NIK71_12000 PF00676 Dehydrogenase E1 component NIK71_12000 PF16870 2-oxoglutarate dehydrogenase C-terminal NIK71_12000 PF02779 Transketolase, pyrimidine binding domain NIK71_12015 PF13085 2Fe-2S iron-sulfur cluster binding domain NIK71_12020 PF00890 FAD binding domain NIK71_12020 PF02910 Fumarate reductase flavoprotein C-term NIK71_12025 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIK71_12030 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIK71_12035 PF00285 Citrate synthase, C-terminal domain NIK71_12045 PF17773 UPF0176 acylphosphatase like domain NIK71_12045 PF00581 Rhodanese-like domain NIK71_12065 PF04539 Sigma-70 region 3 NIK71_12065 PF04542 Sigma-70 region 2 NIK71_12065 PF00140 Sigma-70 factor, region 1.2 NIK71_12065 PF04545 Sigma-70, region 4 NIK71_12065 PF04546 Sigma-70, non-essential region NIK71_12065 PF03979 Sigma-70 factor, region 1.1 NIK71_12070 PF04359 Protein of unknown function (DUF493) NIK71_12075 PF03099 Biotin/lipoate A/B protein ligase family NIK71_12085 PF00465 Iron-containing alcohol dehydrogenase NIK71_12090 PF13520 Amino acid permease NIK71_12095 PF03358 NADPH-dependent FMN reductase NIK71_12100 PF01638 HxlR-like helix-turn-helix NIK71_12105 PF00588 SpoU rRNA Methylase family NIK71_12110 PF10414 Sirohaem synthase dimerisation region NIK71_12110 PF14824 Sirohaem biosynthesis protein central NIK71_12110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIK71_12115 PF02403 Seryl-tRNA synthetase N-terminal domain NIK71_12115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIK71_12125 PF03548 Outer membrane lipoprotein carrier protein LolA NIK71_12130 PF01016 Ribosomal L27 protein NIK71_12135 PF00829 Ribosomal prokaryotic L21 protein NIK71_12145 PF00348 Polyprenyl synthetase NIK71_12155 PF01569 PAP2 superfamily NIK71_12160 PF00529 HlyD membrane-fusion protein of T1SS NIK71_12160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIK71_12165 PF00873 AcrB/AcrD/AcrF family NIK71_12170 PF02321 Outer membrane efflux protein NIK71_12175 PF01906 Putative heavy-metal-binding NIK71_12180 PF01906 Putative heavy-metal-binding NIK71_12200 PF10458 Valyl tRNA synthetase tRNA binding arm NIK71_12200 PF08264 Anticodon-binding domain of tRNA NIK71_12200 PF00133 tRNA synthetases class I (I, L, M and V) NIK71_12220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_12220 PF03466 LysR substrate binding domain NIK71_12225 PF00909 Ammonium Transporter Family NIK71_12235 PF08521 Two-component sensor kinase N-terminal NIK71_12235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_12235 PF00512 His Kinase A (phospho-acceptor) domain NIK71_12240 PF00072 Response regulator receiver domain NIK71_12240 PF00486 Transcriptional regulatory protein, C terminal NIK71_12245 PF08019 Phosphoethanolamine transferase EptA/EptB NIK71_12245 PF00884 Sulfatase NIK71_12265 PF01734 Patatin-like phospholipase NIK71_12275 PF01145 SPFH domain / Band 7 family NIK71_12280 PF04237 YjbR NIK71_12285 PF00348 Polyprenyl synthetase NIK71_12290 PF04303 PrpF protein NIK71_12295 PF00324 Amino acid permease NIK71_12305 PF01965 DJ-1/PfpI family NIK71_12310 PF00698 Acyl transferase domain NIK71_12310 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_12310 PF08990 Erythronolide synthase docking NIK71_12310 PF09277 Erythronolide synthase, docking NIK71_12310 PF16197 Ketoacyl-synthetase C-terminal extension NIK71_12310 PF00109 Beta-ketoacyl synthase, N-terminal domain NIK71_12310 PF00550 Phosphopantetheine attachment site NIK71_12310 PF08659 KR domain NIK71_12310 PF14765 Polyketide synthase dehydratase NIK71_12310 PF02801 Beta-ketoacyl synthase, C-terminal domain NIK71_12315 PF06719 AraC-type transcriptional regulator N-terminus NIK71_12315 PF12833 Helix-turn-helix domain NIK71_12320 PF02673 Bacitracin resistance protein BacA NIK71_12340 PF02525 Flavodoxin-like fold NIK71_12355 PF01507 Phosphoadenosine phosphosulfate reductase family NIK71_12360 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NIK71_12360 PF06974 Protein of unknown function (DUF1298) NIK71_12370 PF10150 Ribonuclease E/G family NIK71_12370 PF00575 S1 RNA binding domain NIK71_12375 PF02545 Maf-like protein NIK71_12380 PF04093 rod shape-determining protein MreD NIK71_12385 PF04085 rod shape-determining protein MreC NIK71_12395 PF02686 Glu-tRNAGln amidotransferase C subunit NIK71_12400 PF01425 Amidase NIK71_12405 PF02934 GatB/GatE catalytic domain NIK71_12405 PF02637 GatB domain NIK71_12435 PF05992 SbmA/BacA-like family NIK71_12440 PF13291 ACT domain NIK71_12440 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_12445 PF01734 Patatin-like phospholipase NIK71_12450 PF01235 Sodium:alanine symporter family NIK71_12465 PF00881 Nitroreductase family NIK71_12470 PF07690 Major Facilitator Superfamily NIK71_12475 PF12805 FUSC-like inner membrane protein yccS NIK71_12485 PF00667 FAD binding domain NIK71_12485 PF00175 Oxidoreductase NAD-binding domain NIK71_12485 PF00258 Flavodoxin NIK71_12525 PF03734 L,D-transpeptidase catalytic domain NIK71_12525 PF17969 L,D-transpeptidase C-terminal domain NIK71_12530 PF04304 Protein of unknown function (DUF454) NIK71_12540 PF08085 Entericidin EcnA/B family NIK71_12545 PF01546 Peptidase family M20/M25/M40 NIK71_12545 PF07687 Peptidase dimerisation domain NIK71_12555 PF00072 Response regulator receiver domain NIK71_12555 PF01627 Hpt domain NIK71_12555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_12555 PF01584 CheW-like domain NIK71_12560 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NIK71_12560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIK71_12565 PF01584 CheW-like domain NIK71_12570 PF00072 Response regulator receiver domain NIK71_12575 PF00072 Response regulator receiver domain NIK71_12590 PF00873 AcrB/AcrD/AcrF family NIK71_12595 PF03129 Anticodon binding domain NIK71_12595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIK71_12595 PF04073 Aminoacyl-tRNA editing domain NIK71_12600 PF07411 Domain of unknown function (DUF1508) NIK71_12605 PF08274 PhnA Zinc-Ribbon NIK71_12605 PF03831 PhnA domain NIK71_12610 PF04343 Protein of unknown function, DUF488 NIK71_12620 PF01571 Aminomethyltransferase folate-binding domain NIK71_12625 PF10411 Disulfide bond isomerase protein N-terminus NIK71_12625 PF13098 Thioredoxin-like domain NIK71_12635 PF03547 Membrane transport protein NIK71_12640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIK71_12660 PF02245 Methylpurine-DNA glycosylase (MPG) NIK71_12665 PF06827 Zinc finger found in FPG and IleRS NIK71_12665 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NIK71_12665 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NIK71_12680 PF01741 Large-conductance mechanosensitive channel, MscL NIK71_12685 PF00009 Elongation factor Tu GTP binding domain NIK71_12685 PF03144 Elongation factor Tu domain 2 NIK71_12685 PF00679 Elongation factor G C-terminus NIK71_12690 PF00860 Permease family NIK71_12695 PF05175 Methyltransferase small domain NIK71_12695 PF08468 Methyltransferase small domain N-terminal NIK71_12700 PF00324 Amino acid permease NIK71_12705 PF01139 tRNA-splicing ligase RtcB NIK71_12715 PF00691 OmpA family NIK71_12715 PF13505 Outer membrane protein beta-barrel domain NIK71_12725 PF02803 Thiolase, C-terminal domain NIK71_12725 PF00108 Thiolase, N-terminal domain NIK71_12735 PF00893 Small Multidrug Resistance protein NIK71_12745 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIK71_12745 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIK71_12750 PF01011 PQQ enzyme repeat NIK71_12755 PF04966 Carbohydrate-selective porin, OprB family NIK71_12760 PF02515 CoA-transferase family III NIK71_12765 PF02311 AraC-like ligand binding domain NIK71_12765 PF12833 Helix-turn-helix domain NIK71_12770 PF00108 Thiolase, N-terminal domain NIK71_12770 PF02803 Thiolase, C-terminal domain NIK71_12775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIK71_12775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIK71_12775 PF00378 Enoyl-CoA hydratase/isomerase NIK71_12800 PF03006 Haemolysin-III related NIK71_12805 PF07690 Major Facilitator Superfamily NIK71_12805 PF00083 Sugar (and other) transporter NIK71_12815 PF01043 SecA preprotein cross-linking domain NIK71_12815 PF07516 SecA Wing and Scaffold domain NIK71_12815 PF07517 SecA DEAD-like domain NIK71_12815 PF02810 SEC-C motif NIK71_12820 PF00578 AhpC/TSA family NIK71_12820 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIK71_12825 PF00753 Metallo-beta-lactamase superfamily NIK71_12840 PF08245 Mur ligase middle domain NIK71_12840 PF02875 Mur ligase family, glutamate ligase domain NIK71_12845 PF01039 Carboxyl transferase domain NIK71_12850 PF00290 Tryptophan synthase alpha chain NIK71_12875 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_12880 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NIK71_12885 PF07715 TonB-dependent Receptor Plug Domain NIK71_12885 PF00593 TonB dependent receptor NIK71_12890 PF01923 Cobalamin adenosyltransferase NIK71_12910 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NIK71_12915 PF00072 Response regulator receiver domain NIK71_12915 PF00486 Transcriptional regulatory protein, C terminal NIK71_12920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_12920 PF00512 His Kinase A (phospho-acceptor) domain NIK71_12920 PF00672 HAMP domain NIK71_12930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_12930 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIK71_12930 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_12930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_12935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_12935 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_12935 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIK71_12935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_12940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_12940 PF03466 LysR substrate binding domain NIK71_12945 PF02798 Glutathione S-transferase, N-terminal domain NIK71_12945 PF00043 Glutathione S-transferase, C-terminal domain NIK71_12950 PF06146 Phosphate-starvation-inducible E NIK71_12970 PF00593 TonB dependent receptor NIK71_12970 PF07715 TonB-dependent Receptor Plug Domain NIK71_12980 PF02938 GAD domain NIK71_12980 PF00152 tRNA synthetases class II (D, K and N) NIK71_12980 PF01336 OB-fold nucleic acid binding domain NIK71_12985 PF17101 Stealth protein CR1, conserved region 1 NIK71_12985 PF11380 Stealth protein CR2, conserved region 2 NIK71_12985 PF17102 Stealth protein CR3, conserved region 3 NIK71_13010 PF13439 Glycosyltransferase Family 4 NIK71_13010 PF00534 Glycosyl transferases group 1 NIK71_13015 PF00535 Glycosyl transferase family 2 NIK71_13020 PF01522 Polysaccharide deacetylase NIK71_13035 PF01063 Amino-transferase class IV NIK71_13040 PF08335 GlnD PII-uridylyltransferase NIK71_13040 PF03710 Glutamate-ammonia ligase adenylyltransferase NIK71_13045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_13045 PF00512 His Kinase A (phospho-acceptor) domain NIK71_13045 PF07689 KaiB domain NIK71_13055 PF02547 Queuosine biosynthesis protein NIK71_13070 PF01702 Queuine tRNA-ribosyltransferase NIK71_13075 PF02699 Preprotein translocase subunit NIK71_13080 PF02355 Protein export membrane protein NIK71_13080 PF13721 SecD export protein N-terminal TM region NIK71_13080 PF07549 SecD/SecF GG Motif NIK71_13085 PF07549 SecD/SecF GG Motif NIK71_13085 PF02355 Protein export membrane protein NIK71_13090 PF04127 DNA / pantothenate metabolism flavoprotein NIK71_13090 PF02441 Flavoprotein NIK71_13095 PF04002 RadC-like JAB domain NIK71_13100 PF01062 Bestrophin, RFP-TM, chloride channel NIK71_13105 PF02811 PHP domain NIK71_13110 PF04279 Intracellular septation protein A NIK71_13115 PF03795 YCII-related domain NIK71_13125 PF01266 FAD dependent oxidoreductase NIK71_13125 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIK71_13135 PF04461 Protein of unknown function (DUF520) NIK71_13145 PF03061 Thioesterase superfamily NIK71_13150 PF00085 Thioredoxin NIK71_13155 PF00561 alpha/beta hydrolase fold NIK71_13160 PF04273 Putative phosphatase (DUF442) NIK71_13160 PF00753 Metallo-beta-lactamase superfamily NIK71_13170 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_13170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIK71_13205 PF00990 Diguanylate cyclase, GGDEF domain NIK71_13205 PF17152 Periplasmic sensor domain NIK71_13210 PF00691 OmpA family NIK71_13210 PF01389 OmpA-like transmembrane domain NIK71_13215 PF10518 TAT (twin-arginine translocation) pathway signal sequence NIK71_13215 PF00149 Calcineurin-like phosphoesterase NIK71_13220 PF13091 PLD-like domain NIK71_13230 PF01926 50S ribosome-binding GTPase NIK71_13230 PF13167 GTP-binding GTPase N-terminal NIK71_13230 PF16360 GTP-binding GTPase Middle Region NIK71_13250 PF00149 Calcineurin-like phosphoesterase NIK71_13255 PF00398 Ribosomal RNA adenine dimethylase NIK71_13260 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NIK71_13265 PF00572 Ribosomal protein L13 NIK71_13270 PF00380 Ribosomal protein S9/S16 NIK71_13275 PF13417 Glutathione S-transferase, N-terminal domain NIK71_13275 PF00043 Glutathione S-transferase, C-terminal domain NIK71_13280 PF04386 Stringent starvation protein B NIK71_13290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIK71_13290 PF00364 Biotin-requiring enzyme NIK71_13290 PF02785 Biotin carboxylase C-terminal domain NIK71_13290 PF00289 Biotin carboxylase, N-terminal domain NIK71_13300 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_13300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_13300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_13305 PF01039 Carboxyl transferase domain NIK71_13320 PF00440 Bacterial regulatory proteins, tetR family NIK71_13320 PF17932 Tetracyclin repressor-like, C-terminal domain NIK71_13325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_13325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_13325 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_13370 PF01066 CDP-alcohol phosphatidyltransferase NIK71_13375 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NIK71_13395 PF00056 lactate/malate dehydrogenase, NAD binding domain NIK71_13395 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NIK71_13405 PF01464 Transglycosylase SLT domain NIK71_13405 PF10145 Phage-related minor tail protein NIK71_13405 PF01551 Peptidase family M23 NIK71_13410 PF01938 TRAM domain NIK71_13410 PF00919 Uncharacterized protein family UPF0004 NIK71_13410 PF04055 Radical SAM superfamily NIK71_13415 PF02562 PhoH-like protein NIK71_13420 PF02130 Uncharacterized protein family UPF0054 NIK71_13445 PF03358 NADPH-dependent FMN reductase NIK71_13450 PF03631 Virulence factor BrkB NIK71_13455 PF00892 EamA-like transporter family NIK71_13460 PF12833 Helix-turn-helix domain NIK71_13465 PF01557 Fumarylacetoacetate (FAA) hydrolase family NIK71_13515 PF00773 RNB domain NIK71_13515 PF08206 Ribonuclease B OB domain NIK71_13515 PF08461 Ribonuclease R winged-helix domain NIK71_13515 PF17876 Cold shock domain NIK71_13515 PF00575 S1 RNA binding domain NIK71_13520 PF01432 Peptidase family M3 NIK71_13525 PF09526 Probable metal-binding protein (DUF2387) NIK71_13555 PF03937 Flavinator of succinate dehydrogenase NIK71_13560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_13560 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_13560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_13565 PF00743 Flavin-binding monooxygenase-like NIK71_13570 PF01196 Ribosomal protein L17 NIK71_13575 PF01000 RNA polymerase Rpb3/RpoA insert domain NIK71_13575 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NIK71_13575 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NIK71_13580 PF00163 Ribosomal protein S4/S9 N-terminal domain NIK71_13580 PF01479 S4 domain NIK71_13585 PF00411 Ribosomal protein S11 NIK71_13590 PF00416 Ribosomal protein S13/S18 NIK71_13595 PF00444 Ribosomal protein L36 NIK71_13600 PF00344 SecY translocase NIK71_13605 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NIK71_13610 PF00327 Ribosomal protein L30p/L7e NIK71_13615 PF00333 Ribosomal protein S5, N-terminal domain NIK71_13615 PF03719 Ribosomal protein S5, C-terminal domain NIK71_13620 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NIK71_13625 PF00347 Ribosomal protein L6 NIK71_13630 PF00410 Ribosomal protein S8 NIK71_13635 PF00253 Ribosomal protein S14p/S29e NIK71_13640 PF00281 Ribosomal protein L5 NIK71_13640 PF00673 ribosomal L5P family C-terminus NIK71_13645 PF00467 KOW motif NIK71_13645 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NIK71_13650 PF00238 Ribosomal protein L14p/L23e NIK71_13655 PF00366 Ribosomal protein S17 NIK71_13660 PF00831 Ribosomal L29 protein NIK71_13665 PF00252 Ribosomal protein L16p/L10e NIK71_13675 PF00237 Ribosomal protein L22p/L17e NIK71_13680 PF00203 Ribosomal protein S19 NIK71_13685 PF00181 Ribosomal Proteins L2, RNA binding domain NIK71_13685 PF03947 Ribosomal Proteins L2, C-terminal domain NIK71_13690 PF00276 Ribosomal protein L23 NIK71_13695 PF00573 Ribosomal protein L4/L1 family NIK71_13700 PF00297 Ribosomal protein L3 NIK71_13705 PF00338 Ribosomal protein S10p/S20e NIK71_13710 PF00117 Glutamine amidotransferase class-I NIK71_13715 PF01053 Cys/Met metabolism PLP-dependent enzyme NIK71_13720 PF05872 Bacterial protein of unknown function (DUF853) NIK71_13725 PF00175 Oxidoreductase NAD-binding domain NIK71_13725 PF00970 Oxidoreductase FAD-binding domain NIK71_13725 PF00042 Globin NIK71_13730 PF02082 Transcriptional regulator NIK71_13735 PF01926 50S ribosome-binding GTPase NIK71_13745 PF00375 Sodium:dicarboxylate symporter family NIK71_13755 PF01553 Acyltransferase NIK71_13770 PF00270 DEAD/DEAH box helicase NIK71_13770 PF00271 Helicase conserved C-terminal domain NIK71_13770 PF17191 RecG wedge domain NIK71_13775 PF00156 Phosphoribosyl transferase domain NIK71_13780 PF00293 NUDIX domain NIK71_13785 PF03641 Possible lysine decarboxylase NIK71_13790 PF01544 CorA-like Mg2+ transporter protein NIK71_13800 PF05494 MlaC protein NIK71_13810 PF02405 Permease MlaE NIK71_13815 PF00005 ABC transporter NIK71_13825 PF03880 DbpA RNA binding domain NIK71_13825 PF00270 DEAD/DEAH box helicase NIK71_13825 PF00271 Helicase conserved C-terminal domain NIK71_13825 PF12343 Cold shock protein DEAD box A NIK71_13830 PF00459 Inositol monophosphatase family NIK71_13835 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NIK71_13835 PF02779 Transketolase, pyrimidine binding domain NIK71_13835 PF02780 Transketolase, C-terminal domain NIK71_13840 PF00925 GTP cyclohydrolase II NIK71_13845 PF01218 Coproporphyrinogen III oxidase NIK71_13850 PF01488 Shikimate / quinate 5-dehydrogenase NIK71_13850 PF08501 Shikimate dehydrogenase substrate binding domain NIK71_13850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NIK71_13860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_13860 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIK71_13860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_13860 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_13870 PF04024 PspC domain NIK71_13875 PF00571 CBS domain NIK71_13900 PF02091 Glycyl-tRNA synthetase alpha subunit NIK71_13905 PF02092 Glycyl-tRNA synthetase beta subunit NIK71_13905 PF05746 DALR anticodon binding domain NIK71_13915 PF00892 EamA-like transporter family NIK71_13920 PF03466 LysR substrate binding domain NIK71_13920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_13935 PF05922 Peptidase inhibitor I9 NIK71_13935 PF00082 Subtilase family NIK71_13950 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NIK71_13955 PF04996 Succinylarginine dihydrolase NIK71_13960 PF00171 Aldehyde dehydrogenase family NIK71_13965 PF04958 Arginine N-succinyltransferase beta subunit NIK71_13970 PF00202 Aminotransferase class-III NIK71_13975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIK71_13975 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIK71_13980 PF00324 Amino acid permease NIK71_14010 PF13614 AAA domain NIK71_14015 PF01594 AI-2E family transporter NIK71_14020 PF00080 Copper/zinc superoxide dismutase (SODC) NIK71_14025 PF12805 FUSC-like inner membrane protein yccS NIK71_14030 PF07690 Major Facilitator Superfamily NIK71_14040 PF02525 Flavodoxin-like fold NIK71_14045 PF03992 Antibiotic biosynthesis monooxygenase NIK71_14055 PF02913 FAD linked oxidases, C-terminal domain NIK71_14055 PF01565 FAD binding domain NIK71_14060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIK71_14060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIK71_14065 PF00892 EamA-like transporter family NIK71_14070 PF00892 EamA-like transporter family NIK71_14080 PF01925 Sulfite exporter TauE/SafE NIK71_14085 PF01509 TruB family pseudouridylate synthase (N terminal domain) NIK71_14085 PF09157 Pseudouridine synthase II TruB, C-terminal NIK71_14085 PF16198 tRNA pseudouridylate synthase B C-terminal domain NIK71_14090 PF03280 Proteobacterial lipase chaperone protein NIK71_14095 PF00561 alpha/beta hydrolase fold NIK71_14100 PF01245 Ribosomal protein L19 NIK71_14105 PF01746 tRNA (Guanine-1)-methyltransferase NIK71_14110 PF01782 RimM N-terminal domain NIK71_14110 PF05239 PRC-barrel domain NIK71_14115 PF00886 Ribosomal protein S16 NIK71_14155 PF02401 LytB protein NIK71_14160 PF00625 Guanylate kinase NIK71_14165 PF01192 RNA polymerase Rpb6 NIK71_14175 PF02824 TGS domain NIK71_14175 PF13291 ACT domain NIK71_14175 PF04607 Region found in RelA / SpoT proteins NIK71_14180 PF01042 Endoribonuclease L-PSP NIK71_14185 PF04324 BFD-like [2Fe-2S] binding domain NIK71_14190 PF00210 Ferritin-like domain NIK71_14195 PF11846 Virulence factor membrane-bound polymerase, C-terminal NIK71_14195 PF15864 Protein glycosylation ligase NIK71_14195 PF04932 O-Antigen ligase NIK71_14205 PF07963 Prokaryotic N-terminal methylation motif NIK71_14205 PF00114 Pilin (bacterial filament) NIK71_14215 PF04536 TPM domain NIK71_14220 PF04011 LemA family NIK71_14230 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NIK71_14230 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIK71_14235 PF00310 Glutamine amidotransferases class-II NIK71_14235 PF04898 Glutamate synthase central domain NIK71_14235 PF01645 Conserved region in glutamate synthase NIK71_14235 PF01493 GXGXG motif NIK71_14245 PF01761 3-dehydroquinate synthase NIK71_14250 PF01202 Shikimate kinase NIK71_14255 PF07660 Secretin and TonB N terminus short domain NIK71_14255 PF03958 Bacterial type II/III secretion system short domain NIK71_14255 PF11741 AMIN domain NIK71_14255 PF00263 Bacterial type II and III secretion system protein NIK71_14265 PF04350 Pilus assembly protein, PilO NIK71_14270 PF05137 Fimbrial assembly protein (PilN) NIK71_14275 PF11104 Type IV pilus assembly protein PilM; NIK71_14280 PF17092 Penicillin-binding protein OB-like domain NIK71_14280 PF00912 Transglycosylase NIK71_14280 PF00905 Penicillin binding protein transpeptidase domain NIK71_14285 PF13847 Methyltransferase domain NIK71_14295 PF00953 Glycosyl transferase family 4 NIK71_14300 PF02875 Mur ligase family, glutamate ligase domain NIK71_14300 PF08245 Mur ligase middle domain NIK71_14300 PF01225 Mur ligase family, catalytic domain NIK71_14305 PF01225 Mur ligase family, catalytic domain NIK71_14305 PF02875 Mur ligase family, glutamate ligase domain NIK71_14305 PF08245 Mur ligase middle domain NIK71_14310 PF00905 Penicillin binding protein transpeptidase domain NIK71_14310 PF03717 Penicillin-binding Protein dimerisation domain NIK71_14320 PF01795 MraW methylase family NIK71_14335 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIK71_14350 PF00324 Amino acid permease NIK71_14380 PF01545 Cation efflux family NIK71_14385 PF00873 AcrB/AcrD/AcrF family NIK71_14390 PF00529 HlyD membrane-fusion protein of T1SS NIK71_14390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIK71_14410 PF04191 Phospholipid methyltransferase NIK71_14435 PF00005 ABC transporter NIK71_14435 PF12848 ABC transporter NIK71_14440 PF01053 Cys/Met metabolism PLP-dependent enzyme NIK71_14445 PF00106 short chain dehydrogenase NIK71_14450 PF01740 STAS domain NIK71_14450 PF00916 Sulfate permease family NIK71_14455 PF17674 HHH domain NIK71_14455 PF00575 S1 RNA binding domain NIK71_14455 PF09371 Tex-like protein N-terminal domain NIK71_14455 PF16921 Tex protein YqgF-like domain NIK71_14460 PF00072 Response regulator receiver domain NIK71_14460 PF00486 Transcriptional regulatory protein, C terminal NIK71_14465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_14465 PF00672 HAMP domain NIK71_14465 PF00512 His Kinase A (phospho-acceptor) domain NIK71_14475 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NIK71_14475 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NIK71_14480 PF00583 Acetyltransferase (GNAT) family NIK71_14500 PF00475 Imidazoleglycerol-phosphate dehydratase NIK71_14505 PF00117 Glutamine amidotransferase class-I NIK71_14520 PF00977 Histidine biosynthesis protein NIK71_14535 PF03992 Antibiotic biosynthesis monooxygenase NIK71_14550 PF01636 Phosphotransferase enzyme family NIK71_14555 PF00977 Histidine biosynthesis protein NIK71_14570 PF00230 Major intrinsic protein NIK71_14595 PF02705 K+ potassium transporter NIK71_14615 PF02525 Flavodoxin-like fold NIK71_14620 PF01638 HxlR-like helix-turn-helix NIK71_14650 PF12833 Helix-turn-helix domain NIK71_14650 PF02311 AraC-like ligand binding domain NIK71_14655 PF00248 Aldo/keto reductase family NIK71_14675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_14675 PF03466 LysR substrate binding domain NIK71_14680 PF07690 Major Facilitator Superfamily NIK71_14700 PF01593 Flavin containing amine oxidoreductase NIK71_14705 PF02678 Pirin NIK71_14705 PF05726 Pirin C-terminal cupin domain NIK71_14710 PF00857 Isochorismatase family NIK71_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_14720 PF00171 Aldehyde dehydrogenase family NIK71_14725 PF00202 Aminotransferase class-III NIK71_14730 PF00392 Bacterial regulatory proteins, gntR family NIK71_14730 PF00155 Aminotransferase class I and II NIK71_14735 PF00324 Amino acid permease NIK71_14745 PF03591 AzlC protein NIK71_14755 PF00436 Single-strand binding protein family NIK71_14760 PF07690 Major Facilitator Superfamily NIK71_14770 PF02581 Thiamine monophosphate synthase NIK71_14770 PF08543 Phosphomethylpyrimidine kinase NIK71_14770 PF03070 TENA/THI-4/PQQC family NIK71_14775 PF06942 GlpM protein NIK71_14785 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_14785 PF00107 Zinc-binding dehydrogenase NIK71_14790 PF16925 Tetracyclin repressor-like, C-terminal domain NIK71_14790 PF00440 Bacterial regulatory proteins, tetR family NIK71_14795 PF00005 ABC transporter NIK71_14795 PF17755 UvrA DNA-binding domain NIK71_14795 PF17760 UvrA interaction domain NIK71_14805 PF00990 Diguanylate cyclase, GGDEF domain NIK71_14815 PF02028 BCCT, betaine/carnitine/choline family transporter NIK71_14825 PF00474 Sodium:solute symporter family NIK71_14830 PF04341 Protein of unknown function, DUF485 NIK71_14835 PF00512 His Kinase A (phospho-acceptor) domain NIK71_14835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_14835 PF01627 Hpt domain NIK71_14835 PF00072 Response regulator receiver domain NIK71_14835 PF00672 HAMP domain NIK71_14845 PF00072 Response regulator receiver domain NIK71_14845 PF00196 Bacterial regulatory proteins, luxR family NIK71_14850 PF03358 NADPH-dependent FMN reductase NIK71_14855 PF00296 Luciferase-like monooxygenase NIK71_14860 PF00872 Transposase, Mutator family NIK71_14865 PF01037 Lrp/AsnC ligand binding domain NIK71_14870 PF00857 Isochorismatase family NIK71_14875 PF16177 Acetyl-coenzyme A synthetase N-terminus NIK71_14875 PF00501 AMP-binding enzyme NIK71_14875 PF13193 AMP-binding enzyme C-terminal domain NIK71_14885 PF00924 Mechanosensitive ion channel NIK71_14890 PF04452 RNA methyltransferase NIK71_14895 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NIK71_14900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIK71_14920 PF17768 RecJ OB domain NIK71_14920 PF02272 DHHA1 domain NIK71_14920 PF01368 DHH family NIK71_14925 PF01243 Pyridoxamine 5'-phosphate oxidase NIK71_14925 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NIK71_14930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIK71_14930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIK71_14930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIK71_14930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIK71_14935 PF00571 CBS domain NIK71_14935 PF00478 IMP dehydrogenase / GMP reductase domain NIK71_14940 PF03692 Putative zinc- or iron-chelating domain NIK71_14945 PF00258 Flavodoxin NIK71_14945 PF01613 Flavin reductase like domain NIK71_14950 PF00593 TonB dependent receptor NIK71_14950 PF07715 TonB-dependent Receptor Plug Domain NIK71_14955 PF01169 Uncharacterized protein family UPF0016 NIK71_14965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIK71_14965 PF00364 Biotin-requiring enzyme NIK71_14965 PF02817 e3 binding domain NIK71_14970 PF00456 Transketolase, thiamine diphosphate binding domain NIK71_14970 PF17831 Pyruvate dehydrogenase E1 component middle domain NIK71_14975 PF01551 Peptidase family M23 NIK71_14985 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NIK71_14990 PF12327 FtsZ family, C-terminal domain NIK71_14990 PF00091 Tubulin/FtsZ family, GTPase domain NIK71_14995 PF02491 SHS2 domain inserted in FTSA NIK71_15000 PF08478 POTRA domain, FtsQ-type NIK71_15000 PF03799 Cell division protein FtsQ NIK71_15005 PF07478 D-ala D-ala ligase C-terminus NIK71_15005 PF01820 D-ala D-ala ligase N-terminus NIK71_15010 PF01225 Mur ligase family, catalytic domain NIK71_15010 PF02875 Mur ligase family, glutamate ligase domain NIK71_15010 PF08245 Mur ligase middle domain NIK71_15015 PF04101 Glycosyltransferase family 28 C-terminal domain NIK71_15015 PF03033 Glycosyltransferase family 28 N-terminal domain NIK71_15020 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NIK71_15020 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NIK71_15030 PF00593 TonB dependent receptor NIK71_15030 PF07715 TonB-dependent Receptor Plug Domain NIK71_15035 PF00156 Phosphoribosyl transferase domain NIK71_15040 PF03372 Endonuclease/Exonuclease/phosphatase family NIK71_15045 PF03960 ArsC family NIK71_15055 PF07859 alpha/beta hydrolase fold NIK71_15060 PF00990 Diguanylate cyclase, GGDEF domain NIK71_15060 PF07694 5TMR of 5TMR-LYT NIK71_15065 PF11412 Disulphide bond corrector protein DsbC NIK71_15065 PF02683 Cytochrome C biogenesis protein transmembrane region NIK71_15095 PF00576 HIUase/Transthyretin family NIK71_15100 PF00860 Permease family NIK71_15110 PF01494 FAD binding domain NIK71_15115 PF03561 Allantoicase repeat NIK71_15120 PF04115 Ureidoglycolate lyase NIK71_15125 PF00106 short chain dehydrogenase NIK71_15130 PF00204 DNA gyrase B NIK71_15130 PF01751 Toprim domain NIK71_15130 PF00986 DNA gyrase B subunit, carboxyl terminus NIK71_15130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_15135 PF05728 Uncharacterised protein family (UPF0227) NIK71_15150 PF01476 LysM domain NIK71_15150 PF00877 NlpC/P60 family NIK71_15155 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIK71_15155 PF04717 Type VI secretion system, phage-baseplate injector NIK71_15155 PF13296 Putative type VI secretion system Rhs element Vgr NIK71_15160 PF02600 Disulfide bond formation protein DsbB NIK71_15165 PF04262 Glutamate-cysteine ligase NIK71_15180 PF04286 Protein of unknown function (DUF445) NIK71_15185 PF00155 Aminotransferase class I and II NIK71_15190 PF01554 MatE NIK71_15195 PF00106 short chain dehydrogenase NIK71_15205 PF00072 Response regulator receiver domain NIK71_15205 PF00486 Transcriptional regulatory protein, C terminal NIK71_15210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_15210 PF00512 His Kinase A (phospho-acceptor) domain NIK71_15210 PF00989 PAS fold NIK71_15210 PF11808 Phosphate regulon sensor protein PhoR NIK71_15230 PF03069 Acetamidase/Formamidase family NIK71_15235 PF02666 Phosphatidylserine decarboxylase NIK71_15240 PF00581 Rhodanese-like domain NIK71_15245 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIK71_15245 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NIK71_15250 PF02580 D-Tyr-tRNA(Tyr) deacylase NIK71_15275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIK71_15275 PF00925 GTP cyclohydrolase II NIK71_15280 PF00885 6,7-dimethyl-8-ribityllumazine synthase NIK71_15285 PF01029 NusB family NIK71_15290 PF00586 AIR synthase related protein, N-terminal domain NIK71_15290 PF02769 AIR synthase related protein, C-terminal domain NIK71_15295 PF04608 Phosphatidylglycerophosphatase A NIK71_15300 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_15300 PF14602 Hexapeptide repeat of succinyl-transferase NIK71_15300 PF12804 MobA-like NTP transferase domain NIK71_15305 PF01380 SIS domain NIK71_15310 PF01177 Asp/Glu/Hydantoin racemase NIK71_15325 PF00491 Arginase family NIK71_15330 PF01979 Amidohydrolase family NIK71_15335 PF00324 Amino acid permease NIK71_15340 PF00221 Aromatic amino acid lyase NIK71_15345 PF01175 Urocanase Rossmann-like domain NIK71_15345 PF17392 Urocanase C-terminal domain NIK71_15345 PF17391 Urocanase N-terminal domain NIK71_15350 PF05962 HutD NIK71_15355 PF00392 Bacterial regulatory proteins, gntR family NIK71_15355 PF07702 UTRA domain NIK71_15365 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIK71_15365 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIK71_15375 PF00324 Amino acid permease NIK71_15385 PF14497 Glutathione S-transferase, C-terminal domain NIK71_15385 PF02798 Glutathione S-transferase, N-terminal domain NIK71_15390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIK71_15400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIK71_15405 PF04463 Protein of unknown function (DUF523) NIK71_15410 PF01554 MatE NIK71_15415 PF01758 Sodium Bile acid symporter family NIK71_15420 PF00857 Isochorismatase family NIK71_15425 PF00701 Dihydrodipicolinate synthetase family NIK71_15435 PF01259 SAICAR synthetase NIK71_15445 PF01226 Formate/nitrite transporter NIK71_15450 PF00004 ATPase family associated with various cellular activities (AAA) NIK71_15450 PF16193 AAA C-terminal domain NIK71_15450 PF12002 MgsA AAA+ ATPase C terminal NIK71_15455 PF07995 Glucose / Sorbosone dehydrogenase NIK71_15460 PF03692 Putative zinc- or iron-chelating domain NIK71_15465 PF07043 Protein of unknown function (DUF1328) NIK71_15480 PF10576 Iron-sulfur binding domain of endonuclease III NIK71_15480 PF00633 Helix-hairpin-helix motif NIK71_15480 PF00730 HhH-GPD superfamily base excision DNA repair protein NIK71_15480 PF14815 NUDIX domain NIK71_15495 PF03352 Methyladenine glycosylase NIK71_15500 PF00107 Zinc-binding dehydrogenase NIK71_15500 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_15505 PF00155 Aminotransferase class I and II NIK71_15505 PF00392 Bacterial regulatory proteins, gntR family NIK71_15520 PF03466 LysR substrate binding domain NIK71_15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_15525 PF00248 Aldo/keto reductase family NIK71_15530 PF07690 Major Facilitator Superfamily NIK71_15540 PF01113 Dihydrodipicolinate reductase, N-terminus NIK71_15540 PF05173 Dihydrodipicolinate reductase, C-terminus NIK71_15550 PF00226 DnaJ domain NIK71_15550 PF01556 DnaJ C terminal domain NIK71_15550 PF00684 DnaJ central domain NIK71_15560 PF00873 AcrB/AcrD/AcrF family NIK71_15565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIK71_15570 PF00440 Bacterial regulatory proteins, tetR family NIK71_15570 PF08361 MAATS-type transcriptional repressor, C-terminal region NIK71_15575 PF00311 Phosphoenolpyruvate carboxylase NIK71_15580 PF00860 Permease family NIK71_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_15585 PF03466 LysR substrate binding domain NIK71_15600 PF00920 Dehydratase family NIK71_15605 PF02911 Formyl transferase, C-terminal domain NIK71_15605 PF00551 Formyl transferase NIK71_15610 PF01029 NusB family NIK71_15610 PF01189 16S rRNA methyltransferase RsmB/F NIK71_15670 PF00579 tRNA synthetases class I (W and Y) NIK71_15675 PF03702 Anhydro-N-acetylmuramic acid kinase NIK71_15680 PF00561 alpha/beta hydrolase fold NIK71_15685 PF01521 Iron-sulphur cluster biosynthesis NIK71_15705 PF00005 ABC transporter NIK71_15705 PF12848 ABC transporter NIK71_15710 PF09335 SNARE associated Golgi protein NIK71_15720 PF18053 DNA gyrase B subunit insert domain NIK71_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_15720 PF01751 Toprim domain NIK71_15720 PF00204 DNA gyrase B NIK71_15720 PF00986 DNA gyrase B subunit, carboxyl terminus NIK71_15725 PF02463 RecF/RecN/SMC N terminal domain NIK71_15730 PF00712 DNA polymerase III beta subunit, N-terminal domain NIK71_15730 PF02767 DNA polymerase III beta subunit, central domain NIK71_15730 PF02768 DNA polymerase III beta subunit, C-terminal domain NIK71_15735 PF11638 DnaA N-terminal domain NIK71_15735 PF00308 Bacterial dnaA protein NIK71_15735 PF08299 Bacterial dnaA protein helix-turn-helix NIK71_15740 PF00468 Ribosomal protein L34 NIK71_15745 PF00825 Ribonuclease P NIK71_15750 PF01809 Putative membrane protein insertion efficiency factor NIK71_15755 PF02096 60Kd inner membrane protein NIK71_15755 PF14849 YidC periplasmic domain NIK71_15760 PF01926 50S ribosome-binding GTPase NIK71_15760 PF12631 MnmE helical domain NIK71_15760 PF10396 GTP-binding protein TrmE N-terminus NIK71_15765 PF02583 Metal-sensitive transcriptional repressor NIK71_15770 PF01545 Cation efflux family NIK71_15770 PF16916 Dimerisation domain of Zinc Transporter NIK71_15775 PF10411 Disulfide bond isomerase protein N-terminus NIK71_15775 PF13098 Thioredoxin-like domain NIK71_15785 PF00156 Phosphoribosyl transferase domain NIK71_15790 PF01979 Amidohydrolase family NIK71_15795 PF00355 Rieske [2Fe-2S] domain NIK71_15800 PF03738 Glutathionylspermidine synthase preATP-grasp NIK71_15810 PF03741 Integral membrane protein TerC family NIK71_15815 PF01569 PAP2 superfamily NIK71_15825 PF01225 Mur ligase family, catalytic domain NIK71_15825 PF02875 Mur ligase family, glutamate ligase domain NIK71_15825 PF08245 Mur ligase middle domain NIK71_15835 PF00731 AIR carboxylase NIK71_15840 PF02222 ATP-grasp domain NIK71_15840 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NIK71_15845 PF13406 Transglycosylase SLT domain NIK71_15860 PF13737 Transposase DDE domain NIK71_15870 PF00012 Hsp70 protein NIK71_15875 PF01025 GrpE NIK71_15880 PF03466 LysR substrate binding domain NIK71_15880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_15900 PF07859 alpha/beta hydrolase fold NIK71_15905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIK71_15945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIK71_15950 PF01252 Signal peptidase (SPase) II NIK71_15955 PF00133 tRNA synthetases class I (I, L, M and V) NIK71_15955 PF06827 Zinc finger found in FPG and IleRS NIK71_15955 PF08264 Anticodon-binding domain of tRNA NIK71_15960 PF06574 FAD synthetase NIK71_15960 PF01687 Riboflavin kinase NIK71_15970 PF01048 Phosphorylase superfamily NIK71_15975 PF08362 YcdC-like protein, C-terminal region NIK71_15975 PF00440 Bacterial regulatory proteins, tetR family NIK71_15980 PF00005 ABC transporter NIK71_15985 PF00528 Binding-protein-dependent transport system inner membrane component NIK71_15990 PF00296 Luciferase-like monooxygenase NIK71_15995 PF09084 NMT1/THI5 like NIK71_16000 PF09084 NMT1/THI5 like NIK71_16005 PF00583 Acetyltransferase (GNAT) family NIK71_16005 PF00696 Amino acid kinase family NIK71_16020 PF00106 short chain dehydrogenase NIK71_16025 PF13419 Haloacid dehalogenase-like hydrolase NIK71_16035 PF01323 DSBA-like thioredoxin domain NIK71_16040 PF08360 QacR-like protein, C-terminal region NIK71_16040 PF00440 Bacterial regulatory proteins, tetR family NIK71_16045 PF00440 Bacterial regulatory proteins, tetR family NIK71_16050 PF00175 Oxidoreductase NAD-binding domain NIK71_16055 PF00487 Fatty acid desaturase NIK71_16060 PF01138 3' exoribonuclease family, domain 1 NIK71_16060 PF03725 3' exoribonuclease family, domain 2 NIK71_16070 PF05506 Domain of unknown function (DUF756) NIK71_16070 PF04185 Phosphoesterase family NIK71_16080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NIK71_16080 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NIK71_16085 PF01510 N-acetylmuramoyl-L-alanine amidase NIK71_16090 PF03023 Lipid II flippase MurJ NIK71_16095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIK71_16095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIK71_16100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIK71_16100 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIK71_16105 PF13807 G-rich domain on putative tyrosine kinase NIK71_16105 PF13614 AAA domain NIK71_16105 PF02706 Chain length determinant protein NIK71_16110 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIK71_16115 PF02563 Polysaccharide biosynthesis/export protein NIK71_16115 PF10531 SLBB domain NIK71_16115 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NIK71_16120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIK71_16120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIK71_16120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIK71_16125 PF02719 Polysaccharide biosynthesis protein NIK71_16130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIK71_16135 PF02348 Cytidylyltransferase NIK71_16150 PF03102 NeuB family NIK71_16150 PF08666 SAF domain NIK71_16155 PF01943 Polysaccharide biosynthesis protein NIK71_16160 PF07922 Glycosyltransferase family 52 NIK71_16175 PF00535 Glycosyl transferase family 2 NIK71_16180 PF02397 Bacterial sugar transferase NIK71_16185 PF00483 Nucleotidyl transferase NIK71_16190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIK71_16190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIK71_16190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIK71_16195 PF00342 Phosphoglucose isomerase NIK71_16200 PF16363 GDP-mannose 4,6 dehydratase NIK71_16205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIK71_16205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIK71_16205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIK71_16205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIK71_16210 PF02652 L-lactate permease NIK71_16215 PF07729 FCD domain NIK71_16215 PF00392 Bacterial regulatory proteins, gntR family NIK71_16220 PF01070 FMN-dependent dehydrogenase NIK71_16225 PF09330 D-lactate dehydrogenase, membrane binding NIK71_16225 PF01565 FAD binding domain NIK71_16230 PF00155 Aminotransferase class I and II NIK71_16240 PF07729 FCD domain NIK71_16240 PF00392 Bacterial regulatory proteins, gntR family NIK71_16250 PF00285 Citrate synthase, C-terminal domain NIK71_16255 PF00694 Aconitase C-terminal domain NIK71_16255 PF00330 Aconitase family (aconitate hydratase) NIK71_16275 PF00293 NUDIX domain NIK71_16295 PF00109 Beta-ketoacyl synthase, N-terminal domain NIK71_16295 PF02801 Beta-ketoacyl synthase, C-terminal domain NIK71_16310 PF00849 RNA pseudouridylate synthase NIK71_16325 PF00593 TonB dependent receptor NIK71_16325 PF07715 TonB-dependent Receptor Plug Domain NIK71_16335 PF01037 Lrp/AsnC ligand binding domain NIK71_16340 PF01266 FAD dependent oxidoreductase NIK71_16345 PF00842 Alanine racemase, C-terminal domain NIK71_16345 PF01168 Alanine racemase, N-terminal domain NIK71_16350 PF01042 Endoribonuclease L-PSP NIK71_16355 PF00324 Amino acid permease NIK71_16360 PF00324 Amino acid permease NIK71_16370 PF00171 Aldehyde dehydrogenase family NIK71_16375 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIK71_16375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIK71_16380 PF00501 AMP-binding enzyme NIK71_16380 PF13193 AMP-binding enzyme C-terminal domain NIK71_16385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_16385 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_16385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_16390 PF00378 Enoyl-CoA hydratase/isomerase NIK71_16395 PF00378 Enoyl-CoA hydratase/isomerase NIK71_16400 PF00083 Sugar (and other) transporter NIK71_16400 PF07690 Major Facilitator Superfamily NIK71_16405 PF00765 Autoinducer synthase NIK71_16415 PF00196 Bacterial regulatory proteins, luxR family NIK71_16415 PF03472 Autoinducer binding domain NIK71_16420 PF13737 Transposase DDE domain NIK71_16425 PF00501 AMP-binding enzyme NIK71_16430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_16430 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_16430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_16435 PF00550 Phosphopantetheine attachment site NIK71_16435 PF00975 Thioesterase domain NIK71_16435 PF14765 Polyketide synthase dehydratase NIK71_16435 PF08242 Methyltransferase domain NIK71_16435 PF02801 Beta-ketoacyl synthase, C-terminal domain NIK71_16435 PF00109 Beta-ketoacyl synthase, N-terminal domain NIK71_16435 PF16197 Ketoacyl-synthetase C-terminal extension NIK71_16440 PF13193 AMP-binding enzyme C-terminal domain NIK71_16440 PF00668 Condensation domain NIK71_16440 PF00550 Phosphopantetheine attachment site NIK71_16440 PF00975 Thioesterase domain NIK71_16440 PF00501 AMP-binding enzyme NIK71_16455 PF12697 Alpha/beta hydrolase family NIK71_16460 PF01648 4'-phosphopantetheinyl transferase superfamily NIK71_16475 PF01722 BolA-like protein NIK71_16485 PF13614 AAA domain NIK71_16500 PF09335 SNARE associated Golgi protein NIK71_16505 PF07681 DoxX NIK71_16510 PF04286 Protein of unknown function (DUF445) NIK71_16515 PF00117 Glutamine amidotransferase class-I NIK71_16515 PF00958 GMP synthase C terminal domain NIK71_16515 PF02540 NAD synthase NIK71_16520 PF13427 Domain of unknown function (DUF4111) NIK71_16520 PF01909 Nucleotidyltransferase domain NIK71_16525 PF03551 Transcriptional regulator PadR-like family NIK71_16535 PF02678 Pirin NIK71_16535 PF05726 Pirin C-terminal cupin domain NIK71_16555 PF00750 tRNA synthetases class I (R) NIK71_16555 PF03485 Arginyl tRNA synthetase N terminal domain NIK71_16555 PF05746 DALR anticodon binding domain NIK71_16560 PF00390 Malic enzyme, N-terminal domain NIK71_16560 PF03949 Malic enzyme, NAD binding domain NIK71_16570 PF04261 Dyp-type peroxidase family NIK71_16575 PF01810 LysE type translocator NIK71_16580 PF00950 ABC 3 transport family NIK71_16585 PF00005 ABC transporter NIK71_16605 PF00119 ATP synthase A chain NIK71_16610 PF00137 ATP synthase subunit C NIK71_16615 PF00430 ATP synthase B/B' CF(0) NIK71_16620 PF00213 ATP synthase delta (OSCP) subunit NIK71_16625 PF00306 ATP synthase alpha/beta chain, C terminal domain NIK71_16625 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIK71_16625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIK71_16630 PF00231 ATP synthase NIK71_16635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIK71_16635 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIK71_16640 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NIK71_16650 PF00255 Glutathione peroxidase NIK71_16660 PF07690 Major Facilitator Superfamily NIK71_16665 PF00440 Bacterial regulatory proteins, tetR family NIK71_16670 PF00892 EamA-like transporter family NIK71_16675 PF01300 Telomere recombination NIK71_16680 PF02481 DNA recombination-mediator protein A NIK71_16680 PF17782 DprA winged helix domain NIK71_16690 PF01327 Polypeptide deformylase NIK71_16750 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_16760 PF03358 NADPH-dependent FMN reductase NIK71_16780 PF08497 Radical SAM N-terminal NIK71_16780 PF04055 Radical SAM superfamily NIK71_16780 PF11842 Domain of unknown function (DUF3362) NIK71_16800 PF00817 impB/mucB/samB family NIK71_16800 PF11798 IMS family HHH motif NIK71_16800 PF11799 impB/mucB/samB family C-terminal domain NIK71_16810 PF07690 Major Facilitator Superfamily NIK71_16815 PF03641 Possible lysine decarboxylase NIK71_16820 PF03741 Integral membrane protein TerC family NIK71_16820 PF03471 Transporter associated domain NIK71_16825 PF02810 SEC-C motif NIK71_16830 PF03458 UPF0126 domain NIK71_16835 PF07690 Major Facilitator Superfamily NIK71_16840 PF00521 DNA gyrase/topoisomerase IV, subunit A NIK71_16840 PF03989 DNA gyrase C-terminal domain, beta-propeller NIK71_16845 PF00501 AMP-binding enzyme NIK71_16845 PF13193 AMP-binding enzyme C-terminal domain NIK71_16860 PF00719 Inorganic pyrophosphatase NIK71_16865 PF03573 outer membrane porin, OprD family NIK71_16880 PF00701 Dihydrodipicolinate synthetase family NIK71_16890 PF00155 Aminotransferase class I and II NIK71_16890 PF00392 Bacterial regulatory proteins, gntR family NIK71_16905 PF00665 Integrase core domain NIK71_16925 PF00582 Universal stress protein family NIK71_16930 PF00916 Sulfate permease family NIK71_16930 PF01740 STAS domain NIK71_16950 PF00543 Nitrogen regulatory protein P-II NIK71_16955 PF00909 Ammonium Transporter Family NIK71_16960 PF03477 ATP cone domain NIK71_16965 PF01872 RibD C-terminal domain NIK71_16965 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIK71_16975 PF00677 Lumazine binding domain NIK71_16995 PF02789 Cytosol aminopeptidase family, N-terminal domain NIK71_16995 PF00883 Cytosol aminopeptidase family, catalytic domain NIK71_17005 PF03739 Lipopolysaccharide export system permease LptF/LptG NIK71_17010 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NIK71_17010 PF01676 Metalloenzyme superfamily NIK71_17015 PF00595 PDZ domain NIK71_17015 PF03572 Peptidase family S41 NIK71_17020 PF02954 Bacterial regulatory protein, Fis family NIK71_17020 PF00072 Response regulator receiver domain NIK71_17020 PF00158 Sigma-54 interaction domain NIK71_17025 PF00512 His Kinase A (phospho-acceptor) domain NIK71_17025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_17030 PF00196 Bacterial regulatory proteins, luxR family NIK71_17030 PF00072 Response regulator receiver domain NIK71_17035 PF00768 D-alanyl-D-alanine carboxypeptidase NIK71_17040 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_17045 PF01842 ACT domain NIK71_17045 PF00742 Homoserine dehydrogenase NIK71_17045 PF03447 Homoserine dehydrogenase, NAD binding domain NIK71_17050 PF13098 Thioredoxin-like domain NIK71_17050 PF10411 Disulfide bond isomerase protein N-terminus NIK71_17055 PF02899 Phage integrase, N-terminal SAM-like domain NIK71_17055 PF00589 Phage integrase family NIK71_17065 PF07670 Nucleoside recognition NIK71_17065 PF07664 Ferrous iron transport protein B C terminus NIK71_17065 PF02421 Ferrous iron transport protein B NIK71_17075 PF02875 Mur ligase family, glutamate ligase domain NIK71_17075 PF08245 Mur ligase middle domain NIK71_17080 PF01098 Cell cycle protein NIK71_17085 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIK71_17090 PF01258 Prokaryotic dksA/traR C4-type zinc finger NIK71_17095 PF00149 Calcineurin-like phosphoesterase NIK71_17100 PF00293 NUDIX domain NIK71_17105 PF01964 Radical SAM ThiC family NIK71_17105 PF13667 ThiC-associated domain NIK71_17120 PF00892 EamA-like transporter family NIK71_17125 PF02321 Outer membrane efflux protein NIK71_17130 PF01895 PhoU domain NIK71_17135 PF04362 Bacterial Fe(2+) trafficking NIK71_17140 PF00206 Lyase NIK71_17140 PF14698 Argininosuccinate lyase C-terminal NIK71_17145 PF07694 5TMR of 5TMR-LYT NIK71_17145 PF06580 Histidine kinase NIK71_17145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_17150 PF00072 Response regulator receiver domain NIK71_17150 PF04397 LytTr DNA-binding domain NIK71_17155 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NIK71_17155 PF03900 Porphobilinogen deaminase, C-terminal domain NIK71_17180 PF00816 H-NS histone family NIK71_17195 PF00263 Bacterial type II and III secretion system protein NIK71_17195 PF03958 Bacterial type II/III secretion system short domain NIK71_17200 PF00498 FHA domain NIK71_17200 PF12401 Protein of unknown function (DUF2662) NIK71_17205 PF13419 Haloacid dehalogenase-like hydrolase NIK71_17210 PF00425 chorismate binding enzyme NIK71_17210 PF04715 Anthranilate synthase component I, N terminal region NIK71_17235 PF03143 Elongation factor Tu C-terminal domain NIK71_17235 PF00009 Elongation factor Tu GTP binding domain NIK71_17235 PF03144 Elongation factor Tu domain 2 NIK71_17245 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NIK71_17250 PF00467 KOW motif NIK71_17250 PF02357 Transcription termination factor nusG NIK71_17255 PF03946 Ribosomal protein L11, N-terminal domain NIK71_17255 PF00298 Ribosomal protein L11, RNA binding domain NIK71_17260 PF00687 Ribosomal protein L1p/L10e family NIK71_17265 PF00466 Ribosomal protein L10 NIK71_17270 PF00542 Ribosomal protein L7/L12 C-terminal domain NIK71_17270 PF16320 Ribosomal protein L7/L12 dimerisation domain NIK71_17275 PF04560 RNA polymerase Rpb2, domain 7 NIK71_17275 PF04563 RNA polymerase beta subunit NIK71_17275 PF04561 RNA polymerase Rpb2, domain 2 NIK71_17275 PF00562 RNA polymerase Rpb2, domain 6 NIK71_17275 PF10385 RNA polymerase beta subunit external 1 domain NIK71_17275 PF04565 RNA polymerase Rpb2, domain 3 NIK71_17280 PF04997 RNA polymerase Rpb1, domain 1 NIK71_17280 PF00623 RNA polymerase Rpb1, domain 2 NIK71_17280 PF04983 RNA polymerase Rpb1, domain 3 NIK71_17280 PF04998 RNA polymerase Rpb1, domain 5 NIK71_17280 PF05000 RNA polymerase Rpb1, domain 4 NIK71_17300 PF00561 alpha/beta hydrolase fold NIK71_17305 PF13726 Na+-H+ antiporter family NIK71_17305 PF03553 Na+/H+ antiporter family NIK71_17320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_17320 PF00183 Hsp90 protein NIK71_17335 PF01323 DSBA-like thioredoxin domain NIK71_17345 PF00376 MerR family regulatory protein NIK71_17345 PF09278 MerR, DNA binding NIK71_17365 PF02803 Thiolase, C-terminal domain NIK71_17365 PF00108 Thiolase, N-terminal domain NIK71_17370 PF00378 Enoyl-CoA hydratase/isomerase NIK71_17370 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIK71_17370 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIK71_17385 PF13737 Transposase DDE domain NIK71_17400 PF08459 UvrC Helix-hairpin-helix N-terminal NIK71_17400 PF02151 UvrB/uvrC motif NIK71_17400 PF01541 GIY-YIG catalytic domain NIK71_17410 PF01066 CDP-alcohol phosphatidyltransferase NIK71_17415 PF02805 Metal binding domain of Ada NIK71_17415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIK71_17415 PF12833 Helix-turn-helix domain NIK71_17415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIK71_17440 PF13533 Biotin-lipoyl like NIK71_17445 PF03652 Holliday junction resolvase NIK71_17450 PF02622 Uncharacterized ACR, COG1678 NIK71_17455 PF02463 RecF/RecN/SMC N terminal domain NIK71_17465 PF06865 Pyrimidine/purine nucleoside phosphorylase NIK71_17470 PF00588 SpoU rRNA Methylase family NIK71_17470 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIK71_17480 PF01121 Dephospho-CoA kinase NIK71_17485 PF06750 Bacterial Peptidase A24 N-terminal domain NIK71_17485 PF01478 Type IV leader peptidase family NIK71_17495 PF00482 Type II secretion system (T2SS), protein F NIK71_17500 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIK71_17500 PF00437 Type II/IV secretion system protein NIK71_17505 PF00121 Triosephosphate isomerase NIK71_17510 PF03840 Preprotein translocase SecG subunit NIK71_17530 PF02576 RimP N-terminal domain NIK71_17530 PF17384 RimP C-terminal SH3 domain NIK71_17535 PF08529 NusA N-terminal domain NIK71_17535 PF13184 NusA-like KH domain NIK71_17535 PF00575 S1 RNA binding domain NIK71_17540 PF00009 Elongation factor Tu GTP binding domain NIK71_17540 PF11987 Translation-initiation factor 2 NIK71_17540 PF08364 Bacterial translation initiation factor IF-2 associated region NIK71_17540 PF04760 Translation initiation factor IF-2, N-terminal region NIK71_17545 PF02033 Ribosome-binding factor A NIK71_17550 PF03334 Na+/H+ antiporter subunit NIK71_17555 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NIK71_17560 PF01899 Na+/H+ ion antiporter subunit NIK71_17565 PF00361 Proton-conducting membrane transporter NIK71_17570 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIK71_17575 PF00361 Proton-conducting membrane transporter NIK71_17575 PF13244 Domain of unknown function (DUF4040) NIK71_17575 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NIK71_17575 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIK71_17590 PF01502 Phosphoribosyl-AMP cyclohydrolase NIK71_17595 PF01494 FAD binding domain NIK71_17600 PF03109 ABC1 family NIK71_17610 PF01209 ubiE/COQ5 methyltransferase family NIK71_17620 PF03976 Polyphosphate kinase 2 (PPK2) NIK71_17630 PF17946 RecC C-terminal domain NIK71_17635 PF00580 UvrD/REP helicase N-terminal domain NIK71_17635 PF13361 UvrD-like helicase C-terminal domain NIK71_17635 PF12705 PD-(D/E)XK nuclease superfamily NIK71_17640 PF13538 UvrD-like helicase C-terminal domain NIK71_17645 PF00144 Beta-lactamase NIK71_17650 PF00312 Ribosomal protein S15 NIK71_17655 PF00013 KH domain NIK71_17655 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NIK71_17655 PF01138 3' exoribonuclease family, domain 1 NIK71_17655 PF03725 3' exoribonuclease family, domain 2 NIK71_17655 PF00575 S1 RNA binding domain NIK71_17660 PF01544 CorA-like Mg2+ transporter protein NIK71_17670 PF01556 DnaJ C terminal domain NIK71_17670 PF00226 DnaJ domain NIK71_17680 PF01430 Hsp33 protein NIK71_17685 PF00999 Sodium/hydrogen exchanger family NIK71_17685 PF02254 TrkA-N domain NIK71_17690 PF17764 3′ DNA-binding domain (3′BD) NIK71_17690 PF00271 Helicase conserved C-terminal domain NIK71_17690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NIK71_17690 PF18074 Primosomal protein N C-terminal domain NIK71_17690 PF00270 DEAD/DEAH box helicase NIK71_17695 PF00482 Type II secretion system (T2SS), protein F NIK71_17700 PF07963 Prokaryotic N-terminal methylation motif NIK71_17700 PF08334 Type II secretion system (T2SS), protein G NIK71_17710 PF01588 Putative tRNA binding domain NIK71_17715 PF00795 Carbon-nitrogen hydrolase NIK71_17720 PF03471 Transporter associated domain NIK71_17720 PF00571 CBS domain NIK71_17725 PF01206 Sulfurtransferase TusA NIK71_17740 PF01177 Asp/Glu/Hydantoin racemase NIK71_17750 PF00762 Ferrochelatase NIK71_17755 PF00753 Metallo-beta-lactamase superfamily NIK71_17760 PF03884 DNA gyrase inhibitor YacG NIK71_17780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NIK71_17795 PF01197 Ribosomal protein L31 NIK71_17800 PF03109 ABC1 family NIK71_17805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_17805 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIK71_17810 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIK71_17810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_17810 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_17815 PF01554 MatE NIK71_17825 PF04055 Radical SAM superfamily NIK71_17825 PF06969 HemN C-terminal domain NIK71_17830 PF00106 short chain dehydrogenase NIK71_17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_17835 PF03466 LysR substrate binding domain NIK71_17850 PF00501 AMP-binding enzyme NIK71_17850 PF13193 AMP-binding enzyme C-terminal domain NIK71_17855 PF12111 Polyribonucleotide phosphorylase C terminal NIK71_17855 PF10150 Ribonuclease E/G family NIK71_17855 PF00575 S1 RNA binding domain NIK71_17860 PF01479 S4 domain NIK71_17860 PF00849 RNA pseudouridylate synthase NIK71_17865 PF13419 Haloacid dehalogenase-like hydrolase NIK71_17870 PF13280 WYL domain NIK71_17870 PF08279 HTH domain NIK71_17875 PF02798 Glutathione S-transferase, N-terminal domain NIK71_17885 PF03466 LysR substrate binding domain NIK71_17885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_17890 PF12706 Beta-lactamase superfamily domain NIK71_17895 PF00141 Peroxidase NIK71_17900 PF01590 GAF domain NIK71_17900 PF05524 PEP-utilising enzyme, N-terminal NIK71_17900 PF00391 PEP-utilising enzyme, mobile domain NIK71_17900 PF02896 PEP-utilising enzyme, TIM barrel domain NIK71_17905 PF00293 NUDIX domain NIK71_17925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_17925 PF03466 LysR substrate binding domain NIK71_17935 PF00330 Aconitase family (aconitate hydratase) NIK71_17940 PF00694 Aconitase C-terminal domain NIK71_17950 PF00180 Isocitrate/isopropylmalate dehydrogenase NIK71_17965 PF01176 Translation initiation factor 1A / IF-1 NIK71_17975 PF01416 tRNA pseudouridine synthase NIK71_17995 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIK71_17995 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIK71_18005 PF00375 Sodium:dicarboxylate symporter family NIK71_18015 PF03279 Bacterial lipid A biosynthesis acyltransferase NIK71_18020 PF01810 LysE type translocator NIK71_18025 PF00005 ABC transporter NIK71_18025 PF16326 ABC transporter C-terminal domain NIK71_18025 PF12848 ABC transporter NIK71_18030 PF04102 SlyX NIK71_18035 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_18035 PF00107 Zinc-binding dehydrogenase NIK71_18040 PF01638 HxlR-like helix-turn-helix NIK71_18050 PF08272 Topoisomerase I zinc-ribbon-like NIK71_18050 PF01131 DNA topoisomerase NIK71_18050 PF01751 Toprim domain NIK71_18050 PF01396 Topoisomerase DNA binding C4 zinc finger NIK71_18065 PF13361 UvrD-like helicase C-terminal domain NIK71_18065 PF00580 UvrD/REP helicase N-terminal domain NIK71_18070 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NIK71_18090 PF02254 TrkA-N domain NIK71_18090 PF00999 Sodium/hydrogen exchanger family NIK71_18095 PF00471 Ribosomal protein L33 NIK71_18100 PF00830 Ribosomal L28 family NIK71_18105 PF00171 Aldehyde dehydrogenase family NIK71_18115 PF01842 ACT domain NIK71_18115 PF00551 Formyl transferase NIK71_18125 PF01618 MotA/TolQ/ExbB proton channel family NIK71_18135 PF01625 Peptide methionine sulfoxide reductase NIK71_18145 PF00186 Dihydrofolate reductase NIK71_18150 PF00303 Thymidylate synthase NIK71_18165 PF01790 Prolipoprotein diacylglyceryl transferase NIK71_18185 PF00902 Sec-independent protein translocase protein (TatC) NIK71_18190 PF02416 mttA/Hcf106 family NIK71_18195 PF02416 mttA/Hcf106 family NIK71_18205 PF01725 Ham1 family NIK71_18215 PF00561 alpha/beta hydrolase fold NIK71_18215 PF07021 Methionine biosynthesis protein MetW NIK71_18220 PF00561 alpha/beta hydrolase fold NIK71_18225 PF00682 HMGL-like NIK71_18225 PF08502 LeuA allosteric (dimerisation) domain NIK71_18230 PF13640 2OG-Fe(II) oxygenase superfamily NIK71_18230 PF18331 PKHD-type hydroxylase C-terminal domain NIK71_18235 PF07715 TonB-dependent Receptor Plug Domain NIK71_18235 PF00593 TonB dependent receptor NIK71_18240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIK71_18240 PF05697 Bacterial trigger factor protein (TF) NIK71_18240 PF05698 Bacterial trigger factor protein (TF) C-terminus NIK71_18245 PF00574 Clp protease NIK71_18250 PF07724 AAA domain (Cdc48 subfamily) NIK71_18250 PF10431 C-terminal, D2-small domain, of ClpB protein NIK71_18250 PF06689 ClpX C4-type zinc finger NIK71_18265 PF05681 Fumarate hydratase (Fumerase) NIK71_18265 PF05683 Fumarase C-terminus NIK71_18270 PF07085 DRTGG domain NIK71_18270 PF01515 Phosphate acetyl/butaryl transferase NIK71_18275 PF00871 Acetokinase family NIK71_18280 PF00920 Dehydratase family NIK71_18285 PF01081 KDPG and KHG aldolase NIK71_18290 PF02447 GntP family permease NIK71_18295 PF01202 Shikimate kinase NIK71_18300 PF00171 Aldehyde dehydrogenase family NIK71_18305 PF00171 Aldehyde dehydrogenase family NIK71_18310 PF00561 alpha/beta hydrolase fold NIK71_18320 PF00933 Glycosyl hydrolase family 3 N terminal domain NIK71_18325 PF11818 C-terminal domain of tail specific protease (DUF3340) NIK71_18325 PF00595 PDZ domain NIK71_18325 PF03572 Peptidase family S41 NIK71_18325 PF17804 Tail specific protease N-terminal domain NIK71_18330 PF13439 Glycosyltransferase Family 4 NIK71_18330 PF00534 Glycosyl transferases group 1 NIK71_18335 PF01569 PAP2 superfamily NIK71_18340 PF04384 Iron-sulphur cluster assembly NIK71_18345 PF00334 Nucleoside diphosphate kinase NIK71_18350 PF04055 Radical SAM superfamily NIK71_18360 PF13464 Domain of unknown function (DUF4115) NIK71_18365 PF04551 GcpE protein NIK71_18370 PF03129 Anticodon binding domain NIK71_18370 PF13393 Histidyl-tRNA synthetase NIK71_18380 PF13360 PQQ-like domain NIK71_18385 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NIK71_18385 PF01926 50S ribosome-binding GTPase NIK71_18400 PF00550 Phosphopantetheine attachment site NIK71_18405 PF00550 Phosphopantetheine attachment site NIK71_18415 PF00501 AMP-binding enzyme NIK71_18415 PF13193 AMP-binding enzyme C-terminal domain NIK71_18430 PF00221 Aromatic amino acid lyase NIK71_18450 PF04820 Tryptophan halogenase NIK71_18460 PF02801 Beta-ketoacyl synthase, C-terminal domain NIK71_18460 PF00109 Beta-ketoacyl synthase, N-terminal domain NIK71_18475 PF00109 Beta-ketoacyl synthase, N-terminal domain NIK71_18475 PF02801 Beta-ketoacyl synthase, C-terminal domain NIK71_18490 PF02556 Preprotein translocase subunit SecB NIK71_18495 PF00462 Glutaredoxin NIK71_18505 PF03193 RsgA GTPase NIK71_18510 PF00929 Exonuclease NIK71_18525 PF02321 Outer membrane efflux protein NIK71_18530 PF00005 ABC transporter NIK71_18530 PF02687 FtsX-like permease family NIK71_18530 PF12704 MacB-like periplasmic core domain NIK71_18535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIK71_18550 PF09334 tRNA synthetases class I (M) NIK71_18550 PF13603 Leucyl-tRNA synthetase, Domain 2 NIK71_18550 PF00133 tRNA synthetases class I (I, L, M and V) NIK71_18550 PF08264 Anticodon-binding domain of tRNA NIK71_18560 PF00205 Thiamine pyrophosphate enzyme, central domain NIK71_18560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIK71_18560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIK71_18565 PF10369 Small subunit of acetolactate synthase NIK71_18570 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NIK71_18570 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NIK71_18575 PF00563 EAL domain NIK71_18575 PF00990 Diguanylate cyclase, GGDEF domain NIK71_18575 PF03707 Bacterial signalling protein N terminal repeat NIK71_18595 PF03144 Elongation factor Tu domain 2 NIK71_18595 PF16658 Class II release factor RF3, C-terminal domain NIK71_18595 PF00009 Elongation factor Tu GTP binding domain NIK71_18610 PF01026 TatD related DNase NIK71_18615 PF00330 Aconitase family (aconitate hydratase) NIK71_18615 PF00694 Aconitase C-terminal domain NIK71_18625 PF00899 ThiF family NIK71_18635 PF03466 LysR substrate binding domain NIK71_18635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_18645 PF01207 Dihydrouridine synthase (Dus) NIK71_18650 PF07690 Major Facilitator Superfamily NIK71_18660 PF00892 EamA-like transporter family NIK71_18665 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NIK71_18665 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NIK71_18670 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NIK71_18675 PF02233 NAD(P) transhydrogenase beta subunit NIK71_18680 PF00106 short chain dehydrogenase NIK71_18690 PF01261 Xylose isomerase-like TIM barrel NIK71_18695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIK71_18695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIK71_18700 PF00378 Enoyl-CoA hydratase/isomerase NIK71_18705 PF01627 Hpt domain NIK71_18705 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIK71_18705 PF00072 Response regulator receiver domain NIK71_18705 PF00512 His Kinase A (phospho-acceptor) domain NIK71_18705 PF00672 HAMP domain NIK71_18705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIK71_18710 PF00291 Pyridoxal-phosphate dependent enzyme NIK71_18720 PF05958 tRNA (Uracil-5-)-methyltransferase NIK71_18725 PF13291 ACT domain NIK71_18725 PF02824 TGS domain NIK71_18725 PF04607 Region found in RelA / SpoT proteins NIK71_18735 PF03819 MazG nucleotide pyrophosphohydrolase domain NIK71_18745 PF01743 Poly A polymerase head domain NIK71_18745 PF12626 Polymerase A arginine-rich C-terminus NIK71_18745 PF12627 Probable RNA and SrmB- binding site of polymerase A NIK71_18750 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NIK71_18755 PF02548 Ketopantoate hydroxymethyltransferase NIK71_18760 PF02569 Pantoate-beta-alanine ligase NIK71_18765 PF03668 P-loop ATPase protein family NIK71_18770 PF00381 PTS HPr component phosphorylation site NIK71_18775 PF04751 Protein of unknown function (DUF615) NIK71_18780 PF00501 AMP-binding enzyme NIK71_18780 PF13193 AMP-binding enzyme C-terminal domain NIK71_18785 PF03129 Anticodon binding domain NIK71_18785 PF02824 TGS domain NIK71_18785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIK71_18785 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIK71_18790 PF00707 Translation initiation factor IF-3, C-terminal domain NIK71_18790 PF05198 Translation initiation factor IF-3, N-terminal domain NIK71_18795 PF00043 Glutathione S-transferase, C-terminal domain NIK71_18795 PF02798 Glutathione S-transferase, N-terminal domain NIK71_18800 PF09335 SNARE associated Golgi protein NIK71_18805 PF07690 Major Facilitator Superfamily NIK71_18815 PF01632 Ribosomal protein L35 NIK71_18820 PF00453 Ribosomal protein L20 NIK71_18840 PF01409 tRNA synthetases class II core domain (F) NIK71_18840 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NIK71_18845 PF03483 B3/4 domain NIK71_18845 PF03484 tRNA synthetase B5 domain NIK71_18845 PF03147 Ferredoxin-fold anticodon binding domain NIK71_18845 PF01588 Putative tRNA binding domain NIK71_18845 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NIK71_18850 PF00216 Bacterial DNA-binding protein NIK71_18865 PF07498 Rho termination factor, N-terminal domain NIK71_18865 PF07497 Rho termination factor, RNA-binding domain NIK71_18865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIK71_18870 PF00085 Thioredoxin NIK71_18875 PF02541 Ppx/GppA phosphatase family NIK71_18880 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NIK71_18885 PF11734 TilS substrate C-terminal domain NIK71_18885 PF01171 PP-loop family NIK71_18885 PF09179 TilS substrate binding domain NIK71_18890 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIK71_18890 PF03807 NADP oxidoreductase coenzyme F420-dependent NIK71_18895 PF02325 YGGT family NIK71_18900 PF01367 5'-3' exonuclease, C-terminal SAM fold NIK71_18900 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NIK71_18900 PF00476 DNA polymerase family A NIK71_18900 PF01612 3'-5' exonuclease NIK71_18920 PF00437 Type II/IV secretion system protein NIK71_18925 PF02566 OsmC-like protein NIK71_18930 PF01047 MarR family NIK71_18940 PF00795 Carbon-nitrogen hydrolase NIK71_18985 PF00309 Sigma-54 factor, Activator interacting domain (AID) NIK71_18985 PF04963 Sigma-54 factor, core binding domain NIK71_18985 PF04552 Sigma-54, DNA binding domain NIK71_18990 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NIK71_18995 PF01722 BolA-like protein NIK71_19000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIK71_19005 PF01634 ATP phosphoribosyltransferase NIK71_19010 PF00815 Histidinol dehydrogenase NIK71_19015 PF00155 Aminotransferase class I and II NIK71_19020 PF04715 Anthranilate synthase component I, N terminal region NIK71_19020 PF00425 chorismate binding enzyme NIK71_19060 PF00293 NUDIX domain NIK71_19065 PF00132 Bacterial transferase hexapeptide (six repeats) NIK71_19070 PF00814 Glycoprotease family NIK71_19075 PF04445 Putative SAM-dependent methyltransferase NIK71_19085 PF00756 Putative esterase NIK71_19095 PF00834 Ribulose-phosphate 3 epimerase family NIK71_19110 PF00394 Multicopper oxidase NIK71_19110 PF07732 Multicopper oxidase NIK71_19110 PF07731 Multicopper oxidase NIK71_19115 PF05275 Copper resistance protein B precursor (CopB) NIK71_19125 PF00893 Small Multidrug Resistance protein NIK71_19130 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIK71_19130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIK71_19135 PF01960 ArgJ family NIK71_19140 PF02445 Quinolinate synthetase A protein NIK71_19165 PF00962 Adenosine/AMP deaminase NIK71_19170 PF08240 Alcohol dehydrogenase GroES-like domain NIK71_19170 PF00107 Zinc-binding dehydrogenase NIK71_19175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_19175 PF03466 LysR substrate binding domain NIK71_19180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIK71_19180 PF02770 Acyl-CoA dehydrogenase, middle domain NIK71_19180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIK71_19185 PF07690 Major Facilitator Superfamily NIK71_19190 PF02515 CoA-transferase family III NIK71_19200 PF00890 FAD binding domain NIK71_19200 PF14537 Cytochrome c3 NIK71_19205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_19205 PF03466 LysR substrate binding domain NIK71_19215 PF07690 Major Facilitator Superfamily NIK71_19220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_19220 PF03466 LysR substrate binding domain NIK71_19230 PF07687 Peptidase dimerisation domain NIK71_19230 PF01546 Peptidase family M20/M25/M40 NIK71_19235 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIK71_19235 PF12833 Helix-turn-helix domain NIK71_19245 PF01810 LysE type translocator NIK71_19250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIK71_19250 PF03466 LysR substrate binding domain NIK71_19260 PF08267 Cobalamin-independent synthase, N-terminal domain NIK71_19260 PF01717 Cobalamin-independent synthase, Catalytic domain NIK71_19265 PF01613 Flavin reductase like domain NIK71_19275 PF00905 Penicillin binding protein transpeptidase domain NIK71_19295 PF13614 AAA domain NIK71_19300 PF10544 T5orf172 domain NIK71_19320 PF00905 Penicillin binding protein transpeptidase domain NIK71_19340 PF13614 AAA domain NIK71_19345 PF10544 T5orf172 domain NIK71_19375 PF06122 Conjugative relaxosome accessory transposon protein NIK71_19395 PF00817 impB/mucB/samB family NIK71_19395 PF11799 impB/mucB/samB family C-terminal domain NIK71_19395 PF13438 Domain of unknown function (DUF4113) NIK71_19490 PF00565 Staphylococcal nuclease homologue NIK71_19495 PF00816 H-NS histone family NIK71_19550 PF13614 AAA domain NIK71_19555 PF17762 HTH domain found in ParB protein NIK71_19555 PF02195 ParB-like nuclease domain NIK71_19570 PF05816 Toxic anion resistance protein (TelA) NIK71_19665 PF01556 DnaJ C terminal domain NIK71_19665 PF00226 DnaJ domain NIK71_19665 PF00684 DnaJ central domain NIK71_19700 PF08751 TrwC relaxase NIK71_19700 PF18272 single-stranded DNA binding TraI N-terminal subdomain NIK71_19700 PF07057 DNA helicase TraI NIK71_19700 PF18340 DNA relaxase TraI 2B/2B-like domain NIK71_19740 PF13737 Transposase DDE domain NIK71_19745 PF02796 Helix-turn-helix domain of resolvase NIK71_19745 PF00239 Resolvase, N terminal domain NIK71_19760 PF01464 Transglycosylase SLT domain NIK71_19795 PF13098 Thioredoxin-like domain NIK71_19795 PF10411 Disulfide bond isomerase protein N-terminus NIK71_19830 PF06834 TraU protein NIK71_19870 PF00593 TonB dependent receptor NIK71_19870 PF07715 TonB-dependent Receptor Plug Domain