locus-tag class description DLE02_00001 PF00579 tRNA synthetases class I (W and Y) DLE02_00002 PF03702 Anhydro-N-acetylmuramic acid kinase DLE02_00003 PF00561 alpha/beta hydrolase fold DLE02_00004 PF01521 Iron-sulphur cluster biosynthesis DLE02_00008 PF00005 ABC transporter DLE02_00008 PF12848 ABC transporter DLE02_00009 PF09335 SNARE associated Golgi protein DLE02_00011 PF01751 Toprim domain DLE02_00011 PF18053 DNA gyrase B subunit insert domain DLE02_00011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_00011 PF00204 DNA gyrase B DLE02_00011 PF00986 DNA gyrase B subunit, carboxyl terminus DLE02_00012 PF02463 RecF/RecN/SMC N terminal domain DLE02_00013 PF00712 DNA polymerase III beta subunit, N-terminal domain DLE02_00013 PF02767 DNA polymerase III beta subunit, central domain DLE02_00013 PF02768 DNA polymerase III beta subunit, C-terminal domain DLE02_00014 PF00308 Bacterial dnaA protein DLE02_00014 PF08299 Bacterial dnaA protein helix-turn-helix DLE02_00014 PF11638 DnaA N-terminal domain DLE02_00015 PF00468 Ribosomal protein L34 DLE02_00016 PF00825 Ribonuclease P DLE02_00017 PF01809 Putative membrane protein insertion efficiency factor DLE02_00018 PF14849 YidC periplasmic domain DLE02_00018 PF02096 60Kd inner membrane protein DLE02_00019 PF01926 50S ribosome-binding GTPase DLE02_00019 PF12631 MnmE helical domain DLE02_00019 PF10396 GTP-binding protein TrmE N-terminus DLE02_00020 PF02583 Metal-sensitive transcriptional repressor DLE02_00021 PF01545 Cation efflux family DLE02_00021 PF16916 Dimerisation domain of Zinc Transporter DLE02_00022 PF13098 Thioredoxin-like domain DLE02_00022 PF10411 Disulfide bond isomerase protein N-terminus DLE02_00024 PF00156 Phosphoribosyl transferase domain DLE02_00026 PF01979 Amidohydrolase family DLE02_00027 PF00355 Rieske [2Fe-2S] domain DLE02_00028 PF03738 Glutathionylspermidine synthase preATP-grasp DLE02_00031 PF03741 Integral membrane protein TerC family DLE02_00032 PF01569 PAP2 superfamily DLE02_00034 PF08245 Mur ligase middle domain DLE02_00034 PF02875 Mur ligase family, glutamate ligase domain DLE02_00034 PF01225 Mur ligase family, catalytic domain DLE02_00036 PF00731 AIR carboxylase DLE02_00037 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DLE02_00037 PF02222 ATP-grasp domain DLE02_00038 PF13406 Transglycosylase SLT domain DLE02_00042 PF00012 Hsp70 protein DLE02_00043 PF01025 GrpE DLE02_00044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00044 PF03466 LysR substrate binding domain DLE02_00048 PF07859 alpha/beta hydrolase fold DLE02_00049 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DLE02_00057 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DLE02_00058 PF01252 Signal peptidase (SPase) II DLE02_00059 PF06827 Zinc finger found in FPG and IleRS DLE02_00059 PF00133 tRNA synthetases class I (I, L, M and V) DLE02_00059 PF08264 Anticodon-binding domain of tRNA DLE02_00060 PF01687 Riboflavin kinase DLE02_00060 PF06574 FAD synthetase DLE02_00062 PF01048 Phosphorylase superfamily DLE02_00063 PF08362 YcdC-like protein, C-terminal region DLE02_00063 PF00440 Bacterial regulatory proteins, tetR family DLE02_00064 PF00005 ABC transporter DLE02_00065 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_00066 PF00296 Luciferase-like monooxygenase DLE02_00067 PF09084 NMT1/THI5 like DLE02_00068 PF09084 NMT1/THI5 like DLE02_00069 PF00696 Amino acid kinase family DLE02_00069 PF00583 Acetyltransferase (GNAT) family DLE02_00072 PF00106 short chain dehydrogenase DLE02_00073 PF13419 Haloacid dehalogenase-like hydrolase DLE02_00075 PF01323 DSBA-like thioredoxin domain DLE02_00076 PF08360 QacR-like protein, C-terminal region DLE02_00076 PF00440 Bacterial regulatory proteins, tetR family DLE02_00077 PF00440 Bacterial regulatory proteins, tetR family DLE02_00078 PF00175 Oxidoreductase NAD-binding domain DLE02_00079 PF00487 Fatty acid desaturase DLE02_00080 PF03725 3' exoribonuclease family, domain 2 DLE02_00080 PF01138 3' exoribonuclease family, domain 1 DLE02_00081 PF04185 Phosphoesterase family DLE02_00081 PF05506 Domain of unknown function (DUF756) DLE02_00083 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DLE02_00083 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DLE02_00084 PF01510 N-acetylmuramoyl-L-alanine amidase DLE02_00085 PF03023 Lipid II flippase MurJ DLE02_00086 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DLE02_00086 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DLE02_00087 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DLE02_00087 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DLE02_00088 PF13614 AAA domain DLE02_00088 PF13807 G-rich domain on putative tyrosine kinase DLE02_00088 PF02706 Chain length determinant protein DLE02_00089 PF01451 Low molecular weight phosphotyrosine protein phosphatase DLE02_00090 PF10531 SLBB domain DLE02_00090 PF02563 Polysaccharide biosynthesis/export protein DLE02_00090 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DLE02_00091 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DLE02_00091 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DLE02_00091 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DLE02_00092 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DLE02_00092 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DLE02_00093 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_00094 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DLE02_00096 PF14602 Hexapeptide repeat of succinyl-transferase DLE02_00096 PF12464 Maltose acetyltransferase DLE02_00096 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_00097 PF00534 Glycosyl transferases group 1 DLE02_00097 PF13439 Glycosyltransferase Family 4 DLE02_00100 PF00534 Glycosyl transferases group 1 DLE02_00101 PF00535 Glycosyl transferase family 2 DLE02_00102 PF02397 Bacterial sugar transferase DLE02_00103 PF00483 Nucleotidyl transferase DLE02_00104 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DLE02_00104 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DLE02_00104 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DLE02_00105 PF00342 Phosphoglucose isomerase DLE02_00106 PF16363 GDP-mannose 4,6 dehydratase DLE02_00107 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DLE02_00107 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DLE02_00107 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DLE02_00107 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DLE02_00108 PF02652 L-lactate permease DLE02_00109 PF00392 Bacterial regulatory proteins, gntR family DLE02_00109 PF07729 FCD domain DLE02_00110 PF01070 FMN-dependent dehydrogenase DLE02_00111 PF01565 FAD binding domain DLE02_00111 PF09330 D-lactate dehydrogenase, membrane binding DLE02_00112 PF00155 Aminotransferase class I and II DLE02_00113 PF00392 Bacterial regulatory proteins, gntR family DLE02_00113 PF07729 FCD domain DLE02_00115 PF00285 Citrate synthase, C-terminal domain DLE02_00116 PF00330 Aconitase family (aconitate hydratase) DLE02_00116 PF00694 Aconitase C-terminal domain DLE02_00124 PF00109 Beta-ketoacyl synthase, N-terminal domain DLE02_00124 PF02801 Beta-ketoacyl synthase, C-terminal domain DLE02_00126 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DLE02_00126 PF04717 Type VI secretion system, phage-baseplate injector DLE02_00126 PF13296 Putative type VI secretion system Rhs element Vgr DLE02_00132 PF00849 RNA pseudouridylate synthase DLE02_00135 PF07715 TonB-dependent Receptor Plug Domain DLE02_00135 PF00593 TonB dependent receptor DLE02_00137 PF01037 Lrp/AsnC ligand binding domain DLE02_00138 PF01266 FAD dependent oxidoreductase DLE02_00139 PF00842 Alanine racemase, C-terminal domain DLE02_00139 PF01168 Alanine racemase, N-terminal domain DLE02_00140 PF01042 Endoribonuclease L-PSP DLE02_00141 PF00324 Amino acid permease DLE02_00142 PF00324 Amino acid permease DLE02_00144 PF00171 Aldehyde dehydrogenase family DLE02_00145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DLE02_00145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DLE02_00146 PF00501 AMP-binding enzyme DLE02_00146 PF13193 AMP-binding enzyme C-terminal domain DLE02_00147 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_00147 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_00147 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_00148 PF00378 Enoyl-CoA hydratase/isomerase DLE02_00149 PF00378 Enoyl-CoA hydratase/isomerase DLE02_00150 PF00083 Sugar (and other) transporter DLE02_00150 PF07690 Major Facilitator Superfamily DLE02_00151 PF00765 Autoinducer synthase DLE02_00153 PF03472 Autoinducer binding domain DLE02_00153 PF00196 Bacterial regulatory proteins, luxR family DLE02_00154 PF00501 AMP-binding enzyme DLE02_00155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_00155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_00155 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_00156 PF16197 Ketoacyl-synthetase C-terminal extension DLE02_00156 PF00109 Beta-ketoacyl synthase, N-terminal domain DLE02_00156 PF02801 Beta-ketoacyl synthase, C-terminal domain DLE02_00156 PF08242 Methyltransferase domain DLE02_00156 PF00550 Phosphopantetheine attachment site DLE02_00156 PF14765 Polyketide synthase dehydratase DLE02_00156 PF00975 Thioesterase domain DLE02_00157 PF00975 Thioesterase domain DLE02_00157 PF00550 Phosphopantetheine attachment site DLE02_00157 PF00668 Condensation domain DLE02_00157 PF00501 AMP-binding enzyme DLE02_00157 PF13193 AMP-binding enzyme C-terminal domain DLE02_00160 PF16363 GDP-mannose 4,6 dehydratase DLE02_00161 PF01648 4'-phosphopantetheinyl transferase superfamily DLE02_00164 PF01722 BolA-like protein DLE02_00166 PF13614 AAA domain DLE02_00169 PF09335 SNARE associated Golgi protein DLE02_00170 PF07681 DoxX DLE02_00171 PF04286 Protein of unknown function (DUF445) DLE02_00172 PF00117 Glutamine amidotransferase class-I DLE02_00172 PF02540 NAD synthase DLE02_00172 PF00958 GMP synthase C terminal domain DLE02_00173 PF01909 Nucleotidyltransferase domain DLE02_00173 PF13427 Domain of unknown function (DUF4111) DLE02_00174 PF03551 Transcriptional regulator PadR-like family DLE02_00176 PF02678 Pirin DLE02_00176 PF05726 Pirin C-terminal cupin domain DLE02_00180 PF05746 DALR anticodon binding domain DLE02_00180 PF00750 tRNA synthetases class I (R) DLE02_00180 PF03485 Arginyl tRNA synthetase N terminal domain DLE02_00181 PF00390 Malic enzyme, N-terminal domain DLE02_00181 PF03949 Malic enzyme, NAD binding domain DLE02_00182 PF04261 Dyp-type peroxidase family DLE02_00183 PF01810 LysE type translocator DLE02_00184 PF00950 ABC 3 transport family DLE02_00185 PF00005 ABC transporter DLE02_00189 PF00119 ATP synthase A chain DLE02_00190 PF00137 ATP synthase subunit C DLE02_00191 PF00430 ATP synthase B/B' CF(0) DLE02_00192 PF00213 ATP synthase delta (OSCP) subunit DLE02_00193 PF02874 ATP synthase alpha/beta family, beta-barrel domain DLE02_00193 PF00306 ATP synthase alpha/beta chain, C terminal domain DLE02_00193 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DLE02_00194 PF00231 ATP synthase DLE02_00195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DLE02_00195 PF02874 ATP synthase alpha/beta family, beta-barrel domain DLE02_00196 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DLE02_00197 PF11008 Protein of unknown function (DUF2846) DLE02_00199 PF00255 Glutathione peroxidase DLE02_00201 PF07690 Major Facilitator Superfamily DLE02_00202 PF00440 Bacterial regulatory proteins, tetR family DLE02_00203 PF00892 EamA-like transporter family DLE02_00204 PF01300 Telomere recombination DLE02_00205 PF02481 DNA recombination-mediator protein A DLE02_00205 PF17782 DprA winged helix domain DLE02_00207 PF01327 Polypeptide deformylase DLE02_00212 PF00440 Bacterial regulatory proteins, tetR family DLE02_00219 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_00221 PF03358 NADPH-dependent FMN reductase DLE02_00225 PF11842 Domain of unknown function (DUF3362) DLE02_00225 PF04055 Radical SAM superfamily DLE02_00225 PF08497 Radical SAM N-terminal DLE02_00228 PF11798 IMS family HHH motif DLE02_00228 PF11799 impB/mucB/samB family C-terminal domain DLE02_00228 PF00817 impB/mucB/samB family DLE02_00230 PF07690 Major Facilitator Superfamily DLE02_00231 PF03641 Possible lysine decarboxylase DLE02_00232 PF03741 Integral membrane protein TerC family DLE02_00232 PF03471 Transporter associated domain DLE02_00233 PF02810 SEC-C motif DLE02_00234 PF03458 UPF0126 domain DLE02_00235 PF07690 Major Facilitator Superfamily DLE02_00236 PF03989 DNA gyrase C-terminal domain, beta-propeller DLE02_00236 PF00521 DNA gyrase/topoisomerase IV, subunit A DLE02_00237 PF13193 AMP-binding enzyme C-terminal domain DLE02_00237 PF00501 AMP-binding enzyme DLE02_00240 PF00719 Inorganic pyrophosphatase DLE02_00241 PF03573 outer membrane porin, OprD family DLE02_00243 PF00701 Dihydrodipicolinate synthetase family DLE02_00245 PF00155 Aminotransferase class I and II DLE02_00245 PF00392 Bacterial regulatory proteins, gntR family DLE02_00248 PF00665 Integrase core domain DLE02_00253 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_00254 PF03358 NADPH-dependent FMN reductase DLE02_00255 PF01758 Sodium Bile acid symporter family DLE02_00257 PF01022 Bacterial regulatory protein, arsR family DLE02_00258 PF03960 ArsC family DLE02_00260 PF13411 MerR HTH family regulatory protein DLE02_00262 PF01252 Signal peptidase (SPase) II DLE02_00265 PF01131 DNA topoisomerase DLE02_00265 PF01751 Toprim domain DLE02_00265 PF01396 Topoisomerase DNA binding C4 zinc finger DLE02_00268 PF00809 Pterin binding enzyme DLE02_00271 PF13610 DDE domain DLE02_00272 PF11809 Domain of unknown function (DUF3330) DLE02_00272 PF00563 EAL domain DLE02_00273 PF13411 MerR HTH family regulatory protein DLE02_00274 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DLE02_00274 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_00274 PF00403 Heavy-metal-associated domain DLE02_00275 PF03203 MerC mercury resistance protein DLE02_00276 PF00403 Heavy-metal-associated domain DLE02_00277 PF00376 MerR family regulatory protein DLE02_00277 PF09278 MerR, DNA binding DLE02_00278 PF00440 Bacterial regulatory proteins, tetR family DLE02_00278 PF02909 Tetracyclin repressor-like, C-terminal domain DLE02_00279 PF07690 Major Facilitator Superfamily DLE02_00280 PF00892 EamA-like transporter family DLE02_00281 PF01526 Tn3 transposase DDE domain DLE02_00281 PF13700 Domain of unknown function (DUF4158) DLE02_00282 PF13610 DDE domain DLE02_00283 PF01636 Phosphotransferase enzyme family DLE02_00284 PF13610 DDE domain DLE02_00285 PF01636 Phosphotransferase enzyme family DLE02_00286 PF13610 DDE domain DLE02_00287 PF00563 EAL domain DLE02_00287 PF11809 Domain of unknown function (DUF3330) DLE02_00288 PF00589 Phage integrase family DLE02_00288 PF13495 Phage integrase, N-terminal SAM-like domain DLE02_00291 PF00905 Penicillin binding protein transpeptidase domain DLE02_00292 PF00893 Small Multidrug Resistance protein DLE02_00293 PF00809 Pterin binding enzyme DLE02_00296 PF00239 Resolvase, N terminal domain DLE02_00296 PF02796 Helix-turn-helix domain of resolvase DLE02_00297 PF03743 Bacterial conjugation TrbI-like protein DLE02_00298 PF13411 MerR HTH family regulatory protein DLE02_00300 PF01252 Signal peptidase (SPase) II DLE02_00303 PF01740 STAS domain DLE02_00303 PF00916 Sulfate permease family DLE02_00307 PF00543 Nitrogen regulatory protein P-II DLE02_00308 PF00909 Ammonium Transporter Family DLE02_00309 PF03477 ATP cone domain DLE02_00310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DLE02_00310 PF01872 RibD C-terminal domain DLE02_00312 PF00677 Lumazine binding domain DLE02_00316 PF00883 Cytosol aminopeptidase family, catalytic domain DLE02_00316 PF02789 Cytosol aminopeptidase family, N-terminal domain DLE02_00318 PF03739 Lipopolysaccharide export system permease LptF/LptG DLE02_00319 PF01676 Metalloenzyme superfamily DLE02_00319 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DLE02_00320 PF00595 PDZ domain DLE02_00320 PF03572 Peptidase family S41 DLE02_00321 PF02954 Bacterial regulatory protein, Fis family DLE02_00321 PF00072 Response regulator receiver domain DLE02_00321 PF00158 Sigma-54 interaction domain DLE02_00322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_00322 PF00512 His Kinase A (phospho-acceptor) domain DLE02_00323 PF00196 Bacterial regulatory proteins, luxR family DLE02_00323 PF00072 Response regulator receiver domain DLE02_00324 PF00768 D-alanyl-D-alanine carboxypeptidase DLE02_00325 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_00326 PF01842 ACT domain DLE02_00326 PF00742 Homoserine dehydrogenase DLE02_00326 PF03447 Homoserine dehydrogenase, NAD binding domain DLE02_00327 PF10411 Disulfide bond isomerase protein N-terminus DLE02_00327 PF13098 Thioredoxin-like domain DLE02_00328 PF00589 Phage integrase family DLE02_00328 PF02899 Phage integrase, N-terminal SAM-like domain DLE02_00330 PF07670 Nucleoside recognition DLE02_00330 PF07664 Ferrous iron transport protein B C terminus DLE02_00330 PF02421 Ferrous iron transport protein B DLE02_00332 PF08245 Mur ligase middle domain DLE02_00332 PF02875 Mur ligase family, glutamate ligase domain DLE02_00333 PF01098 Cell cycle protein DLE02_00334 PF00749 tRNA synthetases class I (E and Q), catalytic domain DLE02_00335 PF01258 Prokaryotic dksA/traR C4-type zinc finger DLE02_00336 PF00149 Calcineurin-like phosphoesterase DLE02_00337 PF00293 NUDIX domain DLE02_00338 PF13667 ThiC-associated domain DLE02_00338 PF01964 Radical SAM ThiC family DLE02_00341 PF00892 EamA-like transporter family DLE02_00342 PF02321 Outer membrane efflux protein DLE02_00343 PF01895 PhoU domain DLE02_00344 PF04362 Bacterial Fe(2+) trafficking DLE02_00345 PF14698 Argininosuccinate lyase C-terminal DLE02_00345 PF00206 Lyase DLE02_00346 PF07694 5TMR of 5TMR-LYT DLE02_00346 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_00346 PF06580 Histidine kinase DLE02_00347 PF00072 Response regulator receiver domain DLE02_00347 PF04397 LytTr DNA-binding domain DLE02_00348 PF03900 Porphobilinogen deaminase, C-terminal domain DLE02_00348 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DLE02_00353 PF00816 H-NS histone family DLE02_00356 PF03958 Bacterial type II/III secretion system short domain DLE02_00356 PF00263 Bacterial type II and III secretion system protein DLE02_00357 PF00498 FHA domain DLE02_00357 PF12401 Protein of unknown function (DUF2662) DLE02_00358 PF13419 Haloacid dehalogenase-like hydrolase DLE02_00359 PF00425 chorismate binding enzyme DLE02_00359 PF04715 Anthranilate synthase component I, N terminal region DLE02_00364 PF00009 Elongation factor Tu GTP binding domain DLE02_00364 PF03144 Elongation factor Tu domain 2 DLE02_00364 PF03143 Elongation factor Tu C-terminal domain DLE02_00366 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DLE02_00367 PF00467 KOW motif DLE02_00367 PF02357 Transcription termination factor nusG DLE02_00368 PF00298 Ribosomal protein L11, RNA binding domain DLE02_00368 PF03946 Ribosomal protein L11, N-terminal domain DLE02_00369 PF00687 Ribosomal protein L1p/L10e family DLE02_00370 PF00466 Ribosomal protein L10 DLE02_00371 PF00542 Ribosomal protein L7/L12 C-terminal domain DLE02_00371 PF16320 Ribosomal protein L7/L12 dimerisation domain DLE02_00372 PF04565 RNA polymerase Rpb2, domain 3 DLE02_00372 PF04563 RNA polymerase beta subunit DLE02_00372 PF04561 RNA polymerase Rpb2, domain 2 DLE02_00372 PF10385 RNA polymerase beta subunit external 1 domain DLE02_00372 PF00562 RNA polymerase Rpb2, domain 6 DLE02_00372 PF04560 RNA polymerase Rpb2, domain 7 DLE02_00373 PF04998 RNA polymerase Rpb1, domain 5 DLE02_00373 PF05000 RNA polymerase Rpb1, domain 4 DLE02_00373 PF04983 RNA polymerase Rpb1, domain 3 DLE02_00373 PF04997 RNA polymerase Rpb1, domain 1 DLE02_00373 PF00623 RNA polymerase Rpb1, domain 2 DLE02_00377 PF00561 alpha/beta hydrolase fold DLE02_00378 PF13726 Na+-H+ antiporter family DLE02_00378 PF03553 Na+/H+ antiporter family DLE02_00381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_00381 PF00183 Hsp90 protein DLE02_00384 PF01323 DSBA-like thioredoxin domain DLE02_00386 PF00376 MerR family regulatory protein DLE02_00386 PF09278 MerR, DNA binding DLE02_00390 PF02803 Thiolase, C-terminal domain DLE02_00390 PF00108 Thiolase, N-terminal domain DLE02_00391 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DLE02_00391 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DLE02_00391 PF00378 Enoyl-CoA hydratase/isomerase DLE02_00396 PF08459 UvrC Helix-hairpin-helix N-terminal DLE02_00396 PF02151 UvrB/uvrC motif DLE02_00396 PF01541 GIY-YIG catalytic domain DLE02_00398 PF01066 CDP-alcohol phosphatidyltransferase DLE02_00399 PF02805 Metal binding domain of Ada DLE02_00399 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DLE02_00399 PF12833 Helix-turn-helix domain DLE02_00399 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DLE02_00404 PF13533 Biotin-lipoyl like DLE02_00405 PF03652 Holliday junction resolvase DLE02_00406 PF02622 Uncharacterized ACR, COG1678 DLE02_00407 PF02463 RecF/RecN/SMC N terminal domain DLE02_00409 PF06865 Pyrimidine/purine nucleoside phosphorylase DLE02_00410 PF08032 RNA 2'-O ribose methyltransferase substrate binding DLE02_00410 PF00588 SpoU rRNA Methylase family DLE02_00412 PF01121 Dephospho-CoA kinase DLE02_00413 PF06750 Bacterial Peptidase A24 N-terminal domain DLE02_00413 PF01478 Type IV leader peptidase family DLE02_00414 PF00482 Type II secretion system (T2SS), protein F DLE02_00415 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DLE02_00415 PF00437 Type II/IV secretion system protein DLE02_00416 PF00121 Triosephosphate isomerase DLE02_00417 PF03840 Preprotein translocase SecG subunit DLE02_00421 PF17384 RimP C-terminal SH3 domain DLE02_00421 PF02576 RimP N-terminal domain DLE02_00422 PF13184 NusA-like KH domain DLE02_00422 PF08529 NusA N-terminal domain DLE02_00422 PF00575 S1 RNA binding domain DLE02_00423 PF00009 Elongation factor Tu GTP binding domain DLE02_00423 PF11987 Translation-initiation factor 2 DLE02_00423 PF04760 Translation initiation factor IF-2, N-terminal region DLE02_00423 PF08364 Bacterial translation initiation factor IF-2 associated region DLE02_00424 PF02033 Ribosome-binding factor A DLE02_00425 PF03334 Na+/H+ antiporter subunit DLE02_00426 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DLE02_00427 PF01899 Na+/H+ ion antiporter subunit DLE02_00428 PF00361 Proton-conducting membrane transporter DLE02_00429 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DLE02_00430 PF13244 Domain of unknown function (DUF4040) DLE02_00430 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DLE02_00430 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DLE02_00430 PF00361 Proton-conducting membrane transporter DLE02_00434 PF01502 Phosphoribosyl-AMP cyclohydrolase DLE02_00435 PF01494 FAD binding domain DLE02_00436 PF03109 ABC1 family DLE02_00438 PF01209 ubiE/COQ5 methyltransferase family DLE02_00440 PF03976 Polyphosphate kinase 2 (PPK2) DLE02_00442 PF17946 RecC C-terminal domain DLE02_00443 PF12705 PD-(D/E)XK nuclease superfamily DLE02_00443 PF00580 UvrD/REP helicase N-terminal domain DLE02_00443 PF13361 UvrD-like helicase C-terminal domain DLE02_00444 PF13538 UvrD-like helicase C-terminal domain DLE02_00445 PF00144 Beta-lactamase DLE02_00446 PF00312 Ribosomal protein S15 DLE02_00447 PF03725 3' exoribonuclease family, domain 2 DLE02_00447 PF00575 S1 RNA binding domain DLE02_00447 PF01138 3' exoribonuclease family, domain 1 DLE02_00447 PF00013 KH domain DLE02_00447 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DLE02_00448 PF01544 CorA-like Mg2+ transporter protein DLE02_00450 PF00226 DnaJ domain DLE02_00450 PF01556 DnaJ C terminal domain DLE02_00452 PF01430 Hsp33 protein DLE02_00453 PF02254 TrkA-N domain DLE02_00453 PF00999 Sodium/hydrogen exchanger family DLE02_00454 PF18074 Primosomal protein N C-terminal domain DLE02_00454 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DLE02_00454 PF17764 3′ DNA-binding domain (3′BD) DLE02_00454 PF00270 DEAD/DEAH box helicase DLE02_00454 PF00271 Helicase conserved C-terminal domain DLE02_00455 PF00482 Type II secretion system (T2SS), protein F DLE02_00456 PF07963 Prokaryotic N-terminal methylation motif DLE02_00456 PF08334 Type II secretion system (T2SS), protein G DLE02_00458 PF01588 Putative tRNA binding domain DLE02_00459 PF00795 Carbon-nitrogen hydrolase DLE02_00460 PF00571 CBS domain DLE02_00460 PF03471 Transporter associated domain DLE02_00461 PF01206 Sulfurtransferase TusA DLE02_00464 PF01177 Asp/Glu/Hydantoin racemase DLE02_00466 PF00762 Ferrochelatase DLE02_00467 PF00753 Metallo-beta-lactamase superfamily DLE02_00468 PF03884 DNA gyrase inhibitor YacG DLE02_00472 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DLE02_00474 PF01197 Ribosomal protein L31 DLE02_00475 PF03109 ABC1 family DLE02_00476 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_00476 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DLE02_00477 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_00477 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_00477 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DLE02_00478 PF01554 MatE DLE02_00480 PF06969 HemN C-terminal domain DLE02_00480 PF04055 Radical SAM superfamily DLE02_00481 PF00106 short chain dehydrogenase DLE02_00482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00482 PF03466 LysR substrate binding domain DLE02_00485 PF00501 AMP-binding enzyme DLE02_00485 PF13193 AMP-binding enzyme C-terminal domain DLE02_00486 PF10150 Ribonuclease E/G family DLE02_00486 PF12111 Polyribonucleotide phosphorylase C terminal DLE02_00486 PF00575 S1 RNA binding domain DLE02_00487 PF01479 S4 domain DLE02_00487 PF00849 RNA pseudouridylate synthase DLE02_00488 PF13419 Haloacid dehalogenase-like hydrolase DLE02_00489 PF13280 WYL domain DLE02_00489 PF08279 HTH domain DLE02_00490 PF02798 Glutathione S-transferase, N-terminal domain DLE02_00492 PF03466 LysR substrate binding domain DLE02_00492 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00493 PF12706 Beta-lactamase superfamily domain DLE02_00494 PF00141 Peroxidase DLE02_00495 PF02896 PEP-utilising enzyme, TIM barrel domain DLE02_00495 PF05524 PEP-utilising enzyme, N-terminal DLE02_00495 PF00391 PEP-utilising enzyme, mobile domain DLE02_00495 PF01590 GAF domain DLE02_00496 PF00293 NUDIX domain DLE02_00500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00500 PF03466 LysR substrate binding domain DLE02_00502 PF00330 Aconitase family (aconitate hydratase) DLE02_00503 PF00694 Aconitase C-terminal domain DLE02_00505 PF00180 Isocitrate/isopropylmalate dehydrogenase DLE02_00508 PF01176 Translation initiation factor 1A / IF-1 DLE02_00510 PF01416 tRNA pseudouridine synthase DLE02_00514 PF02774 Semialdehyde dehydrogenase, dimerisation domain DLE02_00514 PF01118 Semialdehyde dehydrogenase, NAD binding domain DLE02_00516 PF00375 Sodium:dicarboxylate symporter family DLE02_00518 PF03279 Bacterial lipid A biosynthesis acyltransferase DLE02_00519 PF01810 LysE type translocator DLE02_00520 PF12848 ABC transporter DLE02_00520 PF16326 ABC transporter C-terminal domain DLE02_00520 PF00005 ABC transporter DLE02_00521 PF04102 SlyX DLE02_00522 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_00522 PF00107 Zinc-binding dehydrogenase DLE02_00523 PF01638 HxlR-like helix-turn-helix DLE02_00525 PF01751 Toprim domain DLE02_00525 PF01131 DNA topoisomerase DLE02_00525 PF01396 Topoisomerase DNA binding C4 zinc finger DLE02_00525 PF08272 Topoisomerase I zinc-ribbon-like DLE02_00528 PF00580 UvrD/REP helicase N-terminal domain DLE02_00528 PF13361 UvrD-like helicase C-terminal domain DLE02_00529 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DLE02_00533 PF02254 TrkA-N domain DLE02_00533 PF00999 Sodium/hydrogen exchanger family DLE02_00534 PF00471 Ribosomal protein L33 DLE02_00535 PF00830 Ribosomal L28 family DLE02_00536 PF00171 Aldehyde dehydrogenase family DLE02_00538 PF01842 ACT domain DLE02_00538 PF00551 Formyl transferase DLE02_00540 PF01618 MotA/TolQ/ExbB proton channel family DLE02_00542 PF01625 Peptide methionine sulfoxide reductase DLE02_00544 PF00186 Dihydrofolate reductase DLE02_00545 PF00303 Thymidylate synthase DLE02_00548 PF01790 Prolipoprotein diacylglyceryl transferase DLE02_00552 PF00902 Sec-independent protein translocase protein (TatC) DLE02_00553 PF02416 mttA/Hcf106 family DLE02_00554 PF02416 mttA/Hcf106 family DLE02_00556 PF01725 Ham1 family DLE02_00558 PF07021 Methionine biosynthesis protein MetW DLE02_00558 PF00561 alpha/beta hydrolase fold DLE02_00559 PF00561 alpha/beta hydrolase fold DLE02_00560 PF00682 HMGL-like DLE02_00560 PF08502 LeuA allosteric (dimerisation) domain DLE02_00561 PF13640 2OG-Fe(II) oxygenase superfamily DLE02_00561 PF18331 PKHD-type hydroxylase C-terminal domain DLE02_00562 PF07715 TonB-dependent Receptor Plug Domain DLE02_00562 PF00593 TonB dependent receptor DLE02_00563 PF05698 Bacterial trigger factor protein (TF) C-terminus DLE02_00563 PF05697 Bacterial trigger factor protein (TF) DLE02_00563 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DLE02_00564 PF00574 Clp protease DLE02_00565 PF06689 ClpX C4-type zinc finger DLE02_00565 PF10431 C-terminal, D2-small domain, of ClpB protein DLE02_00565 PF07724 AAA domain (Cdc48 subfamily) DLE02_00568 PF05681 Fumarate hydratase (Fumerase) DLE02_00568 PF05683 Fumarase C-terminus DLE02_00569 PF01515 Phosphate acetyl/butaryl transferase DLE02_00569 PF07085 DRTGG domain DLE02_00570 PF00871 Acetokinase family DLE02_00571 PF00920 Dehydratase family DLE02_00572 PF01081 KDPG and KHG aldolase DLE02_00573 PF02447 GntP family permease DLE02_00574 PF01202 Shikimate kinase DLE02_00575 PF00171 Aldehyde dehydrogenase family DLE02_00576 PF00171 Aldehyde dehydrogenase family DLE02_00577 PF00561 alpha/beta hydrolase fold DLE02_00579 PF00933 Glycosyl hydrolase family 3 N terminal domain DLE02_00580 PF11818 C-terminal domain of tail specific protease (DUF3340) DLE02_00580 PF00595 PDZ domain DLE02_00580 PF03572 Peptidase family S41 DLE02_00580 PF17804 Tail specific protease N-terminal domain DLE02_00581 PF13439 Glycosyltransferase Family 4 DLE02_00581 PF00534 Glycosyl transferases group 1 DLE02_00582 PF01569 PAP2 superfamily DLE02_00583 PF04384 Iron-sulphur cluster assembly DLE02_00584 PF00334 Nucleoside diphosphate kinase DLE02_00585 PF04055 Radical SAM superfamily DLE02_00587 PF13464 Domain of unknown function (DUF4115) DLE02_00588 PF04551 GcpE protein DLE02_00589 PF03129 Anticodon binding domain DLE02_00589 PF13393 Histidyl-tRNA synthetase DLE02_00591 PF13360 PQQ-like domain DLE02_00592 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DLE02_00592 PF01926 50S ribosome-binding GTPase DLE02_00595 PF00550 Phosphopantetheine attachment site DLE02_00596 PF00550 Phosphopantetheine attachment site DLE02_00598 PF00501 AMP-binding enzyme DLE02_00598 PF13193 AMP-binding enzyme C-terminal domain DLE02_00601 PF00221 Aromatic amino acid lyase DLE02_00605 PF04820 Tryptophan halogenase DLE02_00607 PF02801 Beta-ketoacyl synthase, C-terminal domain DLE02_00607 PF00109 Beta-ketoacyl synthase, N-terminal domain DLE02_00610 PF00109 Beta-ketoacyl synthase, N-terminal domain DLE02_00610 PF02801 Beta-ketoacyl synthase, C-terminal domain DLE02_00613 PF02556 Preprotein translocase subunit SecB DLE02_00614 PF00462 Glutaredoxin DLE02_00616 PF03193 RsgA GTPase DLE02_00617 PF00929 Exonuclease DLE02_00620 PF02321 Outer membrane efflux protein DLE02_00621 PF12704 MacB-like periplasmic core domain DLE02_00621 PF02687 FtsX-like permease family DLE02_00621 PF00005 ABC transporter DLE02_00622 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DLE02_00625 PF09334 tRNA synthetases class I (M) DLE02_00625 PF13603 Leucyl-tRNA synthetase, Domain 2 DLE02_00625 PF00133 tRNA synthetases class I (I, L, M and V) DLE02_00625 PF08264 Anticodon-binding domain of tRNA DLE02_00627 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DLE02_00627 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DLE02_00627 PF00205 Thiamine pyrophosphate enzyme, central domain DLE02_00628 PF10369 Small subunit of acetolactate synthase DLE02_00629 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DLE02_00629 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DLE02_00630 PF00563 EAL domain DLE02_00630 PF00990 Diguanylate cyclase, GGDEF domain DLE02_00630 PF03707 Bacterial signalling protein N terminal repeat DLE02_00634 PF00009 Elongation factor Tu GTP binding domain DLE02_00634 PF03144 Elongation factor Tu domain 2 DLE02_00634 PF16658 Class II release factor RF3, C-terminal domain DLE02_00637 PF01026 TatD related DNase DLE02_00638 PF00330 Aconitase family (aconitate hydratase) DLE02_00638 PF00694 Aconitase C-terminal domain DLE02_00640 PF00899 ThiF family DLE02_00641 PF03466 LysR substrate binding domain DLE02_00641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00643 PF01207 Dihydrouridine synthase (Dus) DLE02_00644 PF07690 Major Facilitator Superfamily DLE02_00646 PF00892 EamA-like transporter family DLE02_00647 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DLE02_00647 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DLE02_00648 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DLE02_00649 PF02233 NAD(P) transhydrogenase beta subunit DLE02_00650 PF00106 short chain dehydrogenase DLE02_00652 PF01261 Xylose isomerase-like TIM barrel DLE02_00653 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DLE02_00653 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DLE02_00654 PF00378 Enoyl-CoA hydratase/isomerase DLE02_00655 PF00072 Response regulator receiver domain DLE02_00655 PF01627 Hpt domain DLE02_00655 PF00512 His Kinase A (phospho-acceptor) domain DLE02_00655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_00655 PF00672 HAMP domain DLE02_00655 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DLE02_00656 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_00658 PF05958 tRNA (Uracil-5-)-methyltransferase DLE02_00659 PF04607 Region found in RelA / SpoT proteins DLE02_00659 PF13291 ACT domain DLE02_00659 PF02824 TGS domain DLE02_00661 PF03819 MazG nucleotide pyrophosphohydrolase domain DLE02_00663 PF01743 Poly A polymerase head domain DLE02_00663 PF12627 Probable RNA and SrmB- binding site of polymerase A DLE02_00663 PF12626 Polymerase A arginine-rich C-terminus DLE02_00664 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DLE02_00665 PF02548 Ketopantoate hydroxymethyltransferase DLE02_00666 PF02569 Pantoate-beta-alanine ligase DLE02_00667 PF03668 P-loop ATPase protein family DLE02_00668 PF00381 PTS HPr component phosphorylation site DLE02_00669 PF04751 Protein of unknown function (DUF615) DLE02_00670 PF13193 AMP-binding enzyme C-terminal domain DLE02_00670 PF00501 AMP-binding enzyme DLE02_00671 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DLE02_00671 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DLE02_00671 PF02824 TGS domain DLE02_00671 PF03129 Anticodon binding domain DLE02_00672 PF00707 Translation initiation factor IF-3, C-terminal domain DLE02_00672 PF05198 Translation initiation factor IF-3, N-terminal domain DLE02_00673 PF00043 Glutathione S-transferase, C-terminal domain DLE02_00673 PF02798 Glutathione S-transferase, N-terminal domain DLE02_00674 PF09335 SNARE associated Golgi protein DLE02_00675 PF07690 Major Facilitator Superfamily DLE02_00676 PF01632 Ribosomal protein L35 DLE02_00677 PF00453 Ribosomal protein L20 DLE02_00681 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DLE02_00681 PF01409 tRNA synthetases class II core domain (F) DLE02_00682 PF01588 Putative tRNA binding domain DLE02_00682 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DLE02_00682 PF03483 B3/4 domain DLE02_00682 PF03147 Ferredoxin-fold anticodon binding domain DLE02_00682 PF03484 tRNA synthetase B5 domain DLE02_00683 PF00216 Bacterial DNA-binding protein DLE02_00685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DLE02_00685 PF07498 Rho termination factor, N-terminal domain DLE02_00685 PF07497 Rho termination factor, RNA-binding domain DLE02_00686 PF00085 Thioredoxin DLE02_00687 PF02541 Ppx/GppA phosphatase family DLE02_00688 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DLE02_00689 PF11734 TilS substrate C-terminal domain DLE02_00689 PF09179 TilS substrate binding domain DLE02_00689 PF01171 PP-loop family DLE02_00690 PF03807 NADP oxidoreductase coenzyme F420-dependent DLE02_00690 PF14748 Pyrroline-5-carboxylate reductase dimerisation DLE02_00691 PF02325 YGGT family DLE02_00692 PF01367 5'-3' exonuclease, C-terminal SAM fold DLE02_00692 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DLE02_00692 PF00476 DNA polymerase family A DLE02_00692 PF01612 3'-5' exonuclease DLE02_00696 PF00437 Type II/IV secretion system protein DLE02_00697 PF02566 OsmC-like protein DLE02_00698 PF01047 MarR family DLE02_00700 PF00795 Carbon-nitrogen hydrolase DLE02_00709 PF00309 Sigma-54 factor, Activator interacting domain (AID) DLE02_00709 PF04552 Sigma-54, DNA binding domain DLE02_00709 PF04963 Sigma-54 factor, core binding domain DLE02_00710 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DLE02_00711 PF01722 BolA-like protein DLE02_00712 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DLE02_00713 PF01634 ATP phosphoribosyltransferase DLE02_00714 PF00815 Histidinol dehydrogenase DLE02_00715 PF00155 Aminotransferase class I and II DLE02_00716 PF04715 Anthranilate synthase component I, N terminal region DLE02_00716 PF00425 chorismate binding enzyme DLE02_00724 PF00293 NUDIX domain DLE02_00725 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_00726 PF00814 Glycoprotease family DLE02_00727 PF04445 Putative SAM-dependent methyltransferase DLE02_00729 PF00756 Putative esterase DLE02_00731 PF00834 Ribulose-phosphate 3 epimerase family DLE02_00734 PF07731 Multicopper oxidase DLE02_00734 PF07732 Multicopper oxidase DLE02_00734 PF00394 Multicopper oxidase DLE02_00735 PF05275 Copper resistance protein B precursor (CopB) DLE02_00737 PF00893 Small Multidrug Resistance protein DLE02_00738 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DLE02_00738 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DLE02_00739 PF01960 ArgJ family DLE02_00740 PF02445 Quinolinate synthetase A protein DLE02_00745 PF00962 Adenosine/AMP deaminase DLE02_00746 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_00746 PF00107 Zinc-binding dehydrogenase DLE02_00747 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00747 PF03466 LysR substrate binding domain DLE02_00748 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_00748 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_00748 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_00749 PF07690 Major Facilitator Superfamily DLE02_00750 PF02515 CoA-transferase family III DLE02_00752 PF14537 Cytochrome c3 DLE02_00752 PF00890 FAD binding domain DLE02_00753 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00753 PF03466 LysR substrate binding domain DLE02_00755 PF07690 Major Facilitator Superfamily DLE02_00756 PF03466 LysR substrate binding domain DLE02_00756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00758 PF01546 Peptidase family M20/M25/M40 DLE02_00758 PF07687 Peptidase dimerisation domain DLE02_00759 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DLE02_00759 PF12833 Helix-turn-helix domain DLE02_00761 PF01810 LysE type translocator DLE02_00762 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00762 PF03466 LysR substrate binding domain DLE02_00764 PF01717 Cobalamin-independent synthase, Catalytic domain DLE02_00764 PF08267 Cobalamin-independent synthase, N-terminal domain DLE02_00765 PF01613 Flavin reductase like domain DLE02_00770 PF02567 Phenazine biosynthesis-like protein DLE02_00774 PF01011 PQQ enzyme repeat DLE02_00774 PF13360 PQQ-like domain DLE02_00788 PF13756 Stimulus-sensing domain DLE02_00788 PF13755 Sensor N-terminal transmembrane domain DLE02_00788 PF00512 His Kinase A (phospho-acceptor) domain DLE02_00788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_00788 PF00672 HAMP domain DLE02_00789 PF00268 Ribonucleotide reductase, small chain DLE02_00791 PF02867 Ribonucleotide reductase, barrel domain DLE02_00791 PF03477 ATP cone domain DLE02_00791 PF00317 Ribonucleotide reductase, all-alpha domain DLE02_00792 PF00072 Response regulator receiver domain DLE02_00792 PF00486 Transcriptional regulatory protein, C terminal DLE02_00793 PF00512 His Kinase A (phospho-acceptor) domain DLE02_00793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_00793 PF00672 HAMP domain DLE02_00795 PF00990 Diguanylate cyclase, GGDEF domain DLE02_00795 PF17151 Periplasmic sensor domain DLE02_00796 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DLE02_00797 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DLE02_00798 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DLE02_00798 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DLE02_00800 PF10531 SLBB domain DLE02_00800 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DLE02_00800 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DLE02_00801 PF00384 Molybdopterin oxidoreductase DLE02_00801 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DLE02_00801 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DLE02_00802 PF00146 NADH dehydrogenase DLE02_00803 PF12838 4Fe-4S dicluster domain DLE02_00804 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DLE02_00805 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DLE02_00806 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DLE02_00806 PF00361 Proton-conducting membrane transporter DLE02_00807 PF00361 Proton-conducting membrane transporter DLE02_00808 PF00361 Proton-conducting membrane transporter DLE02_00810 PF00313 'Cold-shock' DNA-binding domain DLE02_00811 PF03466 LysR substrate binding domain DLE02_00811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00812 PF00970 Oxidoreductase FAD-binding domain DLE02_00812 PF00175 Oxidoreductase NAD-binding domain DLE02_00815 PF05552 Conserved TM helix DLE02_00818 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_00819 PF13533 Biotin-lipoyl like DLE02_00824 PF09334 tRNA synthetases class I (M) DLE02_00824 PF01588 Putative tRNA binding domain DLE02_00826 PF10609 NUBPL iron-transfer P-loop NTPase DLE02_00827 PF01048 Phosphorylase superfamily DLE02_00830 PF00692 dUTPase DLE02_00836 PF01207 Dihydrouridine synthase (Dus) DLE02_00838 PF02881 SRP54-type protein, helical bundle domain DLE02_00838 PF02978 Signal peptide binding domain DLE02_00838 PF00448 SRP54-type protein, GTPase domain DLE02_00839 PF03309 Type III pantothenate kinase DLE02_00841 PF01925 Sulfite exporter TauE/SafE DLE02_00843 PF02463 RecF/RecN/SMC N terminal domain DLE02_00843 PF06470 SMC proteins Flexible Hinge Domain DLE02_00845 PF03120 NAD-dependent DNA ligase OB-fold domain DLE02_00845 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DLE02_00845 PF12826 Helix-hairpin-helix motif DLE02_00845 PF00533 BRCA1 C Terminus (BRCT) domain DLE02_00845 PF01653 NAD-dependent DNA ligase adenylation domain DLE02_00846 PF00210 Ferritin-like domain DLE02_00847 PF07690 Major Facilitator Superfamily DLE02_00848 PF00982 Glycosyltransferase family 20 DLE02_00849 PF02358 Trehalose-phosphatase DLE02_00850 PF12697 Alpha/beta hydrolase family DLE02_00850 PF08241 Methyltransferase domain DLE02_00851 PF06968 Biotin and Thiamin Synthesis associated domain DLE02_00851 PF04055 Radical SAM superfamily DLE02_00851 PF00202 Aminotransferase class-III DLE02_00852 PF00155 Aminotransferase class I and II DLE02_00855 PF00849 RNA pseudouridylate synthase DLE02_00855 PF01479 S4 domain DLE02_00856 PF04079 Segregation and condensation complex subunit ScpB DLE02_00857 PF02616 Segregation and condensation protein ScpA DLE02_00858 PF01300 Telomere recombination DLE02_00859 PF04315 Elongation factor P hydroxylase DLE02_00860 PF02620 Large ribosomal RNA subunit accumulation protein YceD DLE02_00861 PF01783 Ribosomal L32p protein family DLE02_00862 PF00698 Acyl transferase domain DLE02_00864 PF00550 Phosphopantetheine attachment site DLE02_00865 PF04972 BON domain DLE02_00865 PF01476 LysM domain DLE02_00866 PF08543 Phosphomethylpyrimidine kinase DLE02_00866 PF03070 TENA/THI-4/PQQC family DLE02_00866 PF02581 Thiamine monophosphate synthase DLE02_00868 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DLE02_00871 PF02261 Aspartate decarboxylase DLE02_00872 PF01195 Peptidyl-tRNA hydrolase DLE02_00873 PF01386 Ribosomal L25p family DLE02_00874 PF14572 Phosphoribosyl synthetase-associated domain DLE02_00874 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DLE02_00879 PF03550 Outer membrane lipoprotein LolB DLE02_00881 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DLE02_00881 PF01488 Shikimate / quinate 5-dehydrogenase DLE02_00881 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DLE02_00882 PF10410 DnaB-helicase binding domain of primase DLE02_00882 PF08278 DNA primase DnaG DnaB-binding DLE02_00882 PF08275 DNA primase catalytic core, N-terminal domain DLE02_00882 PF01807 CHC2 zinc finger DLE02_00883 PF13525 Outer membrane lipoprotein DLE02_00884 PF01479 S4 domain DLE02_00884 PF00849 RNA pseudouridylate synthase DLE02_00885 PF02578 Multi-copper polyphenol oxidoreductase laccase DLE02_00886 PF03358 NADPH-dependent FMN reductase DLE02_00887 PF01668 SmpB protein DLE02_00888 PF01467 Cytidylyltransferase-like DLE02_00889 PF00037 4Fe-4S binding domain DLE02_00892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_00892 PF03466 LysR substrate binding domain DLE02_00893 PF00180 Isocitrate/isopropylmalate dehydrogenase DLE02_00894 PF02028 BCCT, betaine/carnitine/choline family transporter DLE02_00895 PF07859 alpha/beta hydrolase fold DLE02_00896 PF00355 Rieske [2Fe-2S] domain DLE02_00896 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DLE02_00897 PF00171 Aldehyde dehydrogenase family DLE02_00898 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_00898 PF00970 Oxidoreductase FAD-binding domain DLE02_00898 PF00175 Oxidoreductase NAD-binding domain DLE02_00901 PF02540 NAD synthase DLE02_00901 PF00795 Carbon-nitrogen hydrolase DLE02_00903 PF05726 Pirin C-terminal cupin domain DLE02_00903 PF02678 Pirin DLE02_00904 PF03653 Uncharacterised protein family (UPF0093) DLE02_00905 PF00109 Beta-ketoacyl synthase, N-terminal domain DLE02_00905 PF02801 Beta-ketoacyl synthase, C-terminal domain DLE02_00907 PF00164 Ribosomal protein S12/S23 DLE02_00908 PF00177 Ribosomal protein S7p/S5e DLE02_00909 PF03764 Elongation factor G, domain IV DLE02_00909 PF14492 Elongation Factor G, domain II DLE02_00909 PF00009 Elongation factor Tu GTP binding domain DLE02_00909 PF03144 Elongation factor Tu domain 2 DLE02_00909 PF00679 Elongation factor G C-terminus DLE02_00910 PF03144 Elongation factor Tu domain 2 DLE02_00910 PF03143 Elongation factor Tu C-terminal domain DLE02_00910 PF00009 Elongation factor Tu GTP binding domain DLE02_00913 PF00583 Acetyltransferase (GNAT) family DLE02_00914 PF04377 Arginine-tRNA-protein transferase, C terminus DLE02_00914 PF04376 Arginine-tRNA-protein transferase, N terminus DLE02_00915 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DLE02_00916 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_00917 PF01580 FtsK/SpoIIIE family DLE02_00917 PF09397 Ftsk gamma domain DLE02_00917 PF17854 FtsK alpha domain DLE02_00917 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DLE02_00918 PF01810 LysE type translocator DLE02_00921 PF03776 Septum formation topological specificity factor MinE DLE02_00922 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DLE02_00923 PF03775 Septum formation inhibitor MinC, C-terminal domain DLE02_00925 PF01553 Acyltransferase DLE02_00926 PF13488 Glycine zipper DLE02_00926 PF00691 OmpA family DLE02_00928 PF00580 UvrD/REP helicase N-terminal domain DLE02_00928 PF13361 UvrD-like helicase C-terminal domain DLE02_00929 PF00692 dUTPase DLE02_00930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DLE02_00930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DLE02_00930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DLE02_00930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DLE02_00931 PF00696 Amino acid kinase family DLE02_00933 PF13230 Glutamine amidotransferases class-II DLE02_00934 PF01814 Hemerythrin HHE cation binding domain DLE02_00936 PF03658 RnfH family Ubiquitin DLE02_00937 PF04355 SmpA / OmlA family DLE02_00938 PF01475 Ferric uptake regulator family DLE02_00939 PF00437 Type II/IV secretion system protein DLE02_00940 PF00437 Type II/IV secretion system protein DLE02_00941 PF01168 Alanine racemase, N-terminal domain DLE02_00943 PF00149 Calcineurin-like phosphoesterase DLE02_00943 PF12320 Type 5 capsule protein repressor C-terminal domain DLE02_00947 PF08338 Domain of unknown function (DUF1731) DLE02_00947 PF01370 NAD dependent epimerase/dehydratase family DLE02_00948 PF01266 FAD dependent oxidoreductase DLE02_00949 PF00490 Delta-aminolevulinic acid dehydratase DLE02_00950 PF03061 Thioesterase superfamily DLE02_00951 PF13533 Biotin-lipoyl like DLE02_00952 PF07690 Major Facilitator Superfamily DLE02_00955 PF00589 Phage integrase family DLE02_00955 PF13356 Arm DNA-binding domain DLE02_00972 PF18766 SWI2/SNF2 ATPase DLE02_00972 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DLE02_00972 PF11867 Domain of unknown function (DUF3387) DLE02_00973 PF01420 Type I restriction modification DNA specificity domain DLE02_00974 PF02384 N-6 DNA Methylase DLE02_00974 PF12161 HsdM N-terminal domain DLE02_00978 PF00083 Sugar (and other) transporter DLE02_00979 PF00701 Dihydrodipicolinate synthetase family DLE02_00981 PF08281 Sigma-70, region 4 DLE02_00981 PF04542 Sigma-70 region 2 DLE02_00983 PF07715 TonB-dependent Receptor Plug Domain DLE02_00983 PF00593 TonB dependent receptor DLE02_00985 PF04575 Protein of unknown function (DUF560) DLE02_00987 PF01126 Heme oxygenase DLE02_00992 PF13520 Amino acid permease DLE02_00993 PF02574 Homocysteine S-methyltransferase DLE02_00995 PF06039 Malate:quinone oxidoreductase (Mqo) DLE02_00996 PF05199 GMC oxidoreductase DLE02_00996 PF00732 GMC oxidoreductase DLE02_00997 PF00171 Aldehyde dehydrogenase family DLE02_00998 PF13977 BetI-type transcriptional repressor, C-terminal DLE02_00998 PF00440 Bacterial regulatory proteins, tetR family DLE02_00999 PF02028 BCCT, betaine/carnitine/choline family transporter DLE02_01000 PF02028 BCCT, betaine/carnitine/choline family transporter DLE02_01002 PF03061 Thioesterase superfamily DLE02_01004 PF07683 Cobalamin synthesis protein cobW C-terminal domain DLE02_01004 PF02492 CobW/HypB/UreG, nucleotide-binding domain DLE02_01005 PF00375 Sodium:dicarboxylate symporter family DLE02_01006 PF07152 YaeQ protein DLE02_01007 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DLE02_01008 PF14883 Hypothetical glycosyl hydrolase family 13 DLE02_01008 PF01522 Polysaccharide deacetylase DLE02_01009 PF00535 Glycosyl transferase family 2 DLE02_01011 PF00378 Enoyl-CoA hydratase/isomerase DLE02_01014 PF09339 IclR helix-turn-helix domain DLE02_01014 PF01614 Bacterial transcriptional regulator DLE02_01015 PF00355 Rieske [2Fe-2S] domain DLE02_01017 PF00355 Rieske [2Fe-2S] domain DLE02_01019 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DLE02_01020 PF14759 Reductase C-terminal DLE02_01020 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_01021 PF07690 Major Facilitator Superfamily DLE02_01023 PF12697 Alpha/beta hydrolase family DLE02_01025 PF01958 Domain of unknown function DUF108 DLE02_01025 PF03447 Homoserine dehydrogenase, NAD binding domain DLE02_01026 PF00171 Aldehyde dehydrogenase family DLE02_01027 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DLE02_01027 PF00205 Thiamine pyrophosphate enzyme, central domain DLE02_01027 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DLE02_01029 PF07690 Major Facilitator Superfamily DLE02_01031 PF01327 Polypeptide deformylase DLE02_01032 PF04960 Glutaminase DLE02_01033 PF02311 AraC-like ligand binding domain DLE02_01033 PF12833 Helix-turn-helix domain DLE02_01034 PF07690 Major Facilitator Superfamily DLE02_01035 PF01263 Aldose 1-epimerase DLE02_01037 PF03466 LysR substrate binding domain DLE02_01037 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01039 PF07690 Major Facilitator Superfamily DLE02_01040 PF00456 Transketolase, thiamine diphosphate binding domain DLE02_01041 PF02780 Transketolase, C-terminal domain DLE02_01041 PF02779 Transketolase, pyrimidine binding domain DLE02_01042 PF02574 Homocysteine S-methyltransferase DLE02_01042 PF00809 Pterin binding enzyme DLE02_01042 PF02310 B12 binding domain DLE02_01042 PF02965 Vitamin B12 dependent methionine synthase, activation domain DLE02_01042 PF02607 B12 binding domain DLE02_01043 PF01384 Phosphate transporter family DLE02_01044 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_01047 PF03781 Sulfatase-modifying factor enzyme 1 DLE02_01048 PF00884 Sulfatase DLE02_01050 PF01521 Iron-sulphur cluster biosynthesis DLE02_01050 PF01106 NifU-like domain DLE02_01051 PF07715 TonB-dependent Receptor Plug Domain DLE02_01051 PF00593 TonB dependent receptor DLE02_01053 PF00561 alpha/beta hydrolase fold DLE02_01054 PF00484 Carbonic anhydrase DLE02_01055 PF13472 GDSL-like Lipase/Acylhydrolase family DLE02_01056 PF00005 ABC transporter DLE02_01058 PF01694 Rhomboid family DLE02_01059 PF00912 Transglycosylase DLE02_01060 PF02503 Polyphosphate kinase middle domain DLE02_01060 PF13090 Polyphosphate kinase C-terminal domain 2 DLE02_01060 PF17941 Polyphosphate kinase C-terminal domain 1 DLE02_01060 PF13089 Polyphosphate kinase N-terminal domain DLE02_01062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01062 PF03466 LysR substrate binding domain DLE02_01063 PF00561 alpha/beta hydrolase fold DLE02_01064 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_01064 PF18113 Rubredoxin binding C-terminal domain DLE02_01065 PF00301 Rubredoxin DLE02_01068 PF01336 OB-fold nucleic acid binding domain DLE02_01068 PF00152 tRNA synthetases class II (D, K and N) DLE02_01069 PF14052 Capsule assembly protein Wzi DLE02_01071 PF01507 Phosphoadenosine phosphosulfate reductase family DLE02_01072 PF00009 Elongation factor Tu GTP binding domain DLE02_01075 PF03600 Citrate transporter DLE02_01076 PF00571 CBS domain DLE02_01076 PF03471 Transporter associated domain DLE02_01076 PF01595 Cyclin M transmembrane N-terminal domain DLE02_01077 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01077 PF03466 LysR substrate binding domain DLE02_01078 PF00463 Isocitrate lyase family DLE02_01081 PF01774 UreD urease accessory protein DLE02_01082 PF00547 Urease, gamma subunit DLE02_01083 PF00699 Urease beta subunit DLE02_01084 PF01979 Amidohydrolase family DLE02_01084 PF00449 Urease alpha-subunit, N-terminal domain DLE02_01085 PF05194 UreE urease accessory protein, C-terminal domain DLE02_01085 PF02814 UreE urease accessory protein, N-terminal domain DLE02_01086 PF01730 UreF DLE02_01087 PF02492 CobW/HypB/UreG, nucleotide-binding domain DLE02_01090 PF00905 Penicillin binding protein transpeptidase domain DLE02_01090 PF03717 Penicillin-binding Protein dimerisation domain DLE02_01093 PF05191 Adenylate kinase, active site lid DLE02_01094 PF10576 Iron-sulfur binding domain of endonuclease III DLE02_01094 PF00633 Helix-hairpin-helix motif DLE02_01094 PF00730 HhH-GPD superfamily base excision DNA repair protein DLE02_01095 PF04060 Putative Fe-S cluster DLE02_01096 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DLE02_01096 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DLE02_01098 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DLE02_01099 PF02590 Predicted SPOUT methyltransferase DLE02_01100 PF00004 ATPase family associated with various cellular activities (AAA) DLE02_01100 PF05362 Lon protease (S16) C-terminal proteolytic domain DLE02_01100 PF02190 ATP-dependent protease La (LON) substrate-binding domain DLE02_01101 PF13018 Extended Signal Peptide of Type V secretion system DLE02_01101 PF03895 YadA-like membrane anchor domain DLE02_01101 PF05658 Head domain of trimeric autotransporter adhesin DLE02_01101 PF05662 Coiled stalk of trimeric autotransporter adhesin DLE02_01102 PF04355 SmpA / OmlA family DLE02_01102 PF00691 OmpA family DLE02_01103 PF01812 5-formyltetrahydrofolate cyclo-ligase family DLE02_01125 PF03796 DnaB-like helicase C terminal domain DLE02_01125 PF00772 DnaB-like helicase N terminal domain DLE02_01165 PF01551 Peptidase family M23 DLE02_01165 PF01464 Transglycosylase SLT domain DLE02_01165 PF10145 Phage-related minor tail protein DLE02_01173 PF00589 Phage integrase family DLE02_01173 PF13356 Arm DNA-binding domain DLE02_01175 PF00854 POT family DLE02_01176 PF03951 Glutamine synthetase, beta-Grasp domain DLE02_01176 PF00120 Glutamine synthetase, catalytic domain DLE02_01177 PF04345 Chorismate lyase DLE02_01178 PF01040 UbiA prenyltransferase family DLE02_01185 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DLE02_01185 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DLE02_01186 PF01784 NIF3 (NGG1p interacting factor 3) DLE02_01187 PF13180 PDZ domain DLE02_01188 PF12627 Probable RNA and SrmB- binding site of polymerase A DLE02_01188 PF01743 Poly A polymerase head domain DLE02_01189 PF01515 Phosphate acetyl/butaryl transferase DLE02_01189 PF03949 Malic enzyme, NAD binding domain DLE02_01189 PF00390 Malic enzyme, N-terminal domain DLE02_01190 PF00563 EAL domain DLE02_01190 PF03707 Bacterial signalling protein N terminal repeat DLE02_01190 PF00990 Diguanylate cyclase, GGDEF domain DLE02_01191 PF04452 RNA methyltransferase DLE02_01192 PF02219 Methylenetetrahydrofolate reductase DLE02_01193 PF05221 S-adenosyl-L-homocysteine hydrolase DLE02_01193 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DLE02_01196 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01196 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01196 PF09317 Domain of unknown function (DUF1974) DLE02_01197 PF04055 Radical SAM superfamily DLE02_01198 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_01198 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DLE02_01201 PF07690 Major Facilitator Superfamily DLE02_01203 PF00557 Metallopeptidase family M24 DLE02_01204 PF00318 Ribosomal protein S2 DLE02_01205 PF00889 Elongation factor TS DLE02_01207 PF12833 Helix-turn-helix domain DLE02_01211 PF05036 Sporulation related domain DLE02_01211 PF03330 Lytic transglycolase DLE02_01212 PF13406 Transglycosylase SLT domain DLE02_01213 PF01098 Cell cycle protein DLE02_01215 PF14489 QueF-like protein DLE02_01215 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DLE02_01216 PF01061 ABC-2 type transporter DLE02_01217 PF00005 ABC transporter DLE02_01223 PF00464 Serine hydroxymethyltransferase DLE02_01224 PF02321 Outer membrane efflux protein DLE02_01225 PF00873 AcrB/AcrD/AcrF family DLE02_01226 PF13533 Biotin-lipoyl like DLE02_01228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01228 PF03466 LysR substrate binding domain DLE02_01229 PF00497 Bacterial extracellular solute-binding proteins, family 3 DLE02_01230 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01231 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01232 PF00005 ABC transporter DLE02_01233 PF00893 Small Multidrug Resistance protein DLE02_01234 PF00037 4Fe-4S binding domain DLE02_01235 PF01136 Peptidase family U32 DLE02_01235 PF16325 Peptidase family U32 C-terminal domain DLE02_01236 PF00392 Bacterial regulatory proteins, gntR family DLE02_01236 PF00155 Aminotransferase class I and II DLE02_01237 PF02567 Phenazine biosynthesis-like protein DLE02_01238 PF00970 Oxidoreductase FAD-binding domain DLE02_01238 PF00175 Oxidoreductase NAD-binding domain DLE02_01239 PF01980 tRNA-methyltransferase O DLE02_01239 PF18389 TrmO C-terminal domain DLE02_01241 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DLE02_01241 PF00437 Type II/IV secretion system protein DLE02_01243 PF00486 Transcriptional regulatory protein, C terminal DLE02_01243 PF00072 Response regulator receiver domain DLE02_01244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_01244 PF08521 Two-component sensor kinase N-terminal DLE02_01244 PF00512 His Kinase A (phospho-acceptor) domain DLE02_01246 PF00293 NUDIX domain DLE02_01248 PF14814 Bifunctional transglycosylase second domain DLE02_01248 PF00905 Penicillin binding protein transpeptidase domain DLE02_01248 PF00912 Transglycosylase DLE02_01249 PF01513 ATP-NAD kinase DLE02_01250 PF07023 Protein of unknown function (DUF1315) DLE02_01251 PF02885 Glycosyl transferase family, helical bundle domain DLE02_01251 PF00591 Glycosyl transferase family, a/b domain DLE02_01252 PF00375 Sodium:dicarboxylate symporter family DLE02_01253 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01253 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01253 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01254 PF00756 Putative esterase DLE02_01255 PF01842 ACT domain DLE02_01255 PF01817 Chorismate mutase type II DLE02_01255 PF00800 Prephenate dehydratase DLE02_01256 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DLE02_01258 PF07687 Peptidase dimerisation domain DLE02_01258 PF01546 Peptidase family M20/M25/M40 DLE02_01259 PF12706 Beta-lactamase superfamily domain DLE02_01261 PF03883 Peroxide stress protein YaaA DLE02_01263 PF05690 Thiazole biosynthesis protein ThiG DLE02_01265 PF04241 Protein of unknown function (DUF423) DLE02_01266 PF04542 Sigma-70 region 2 DLE02_01266 PF04545 Sigma-70, region 4 DLE02_01266 PF00140 Sigma-70 factor, region 1.2 DLE02_01268 PF00313 'Cold-shock' DNA-binding domain DLE02_01269 PF00271 Helicase conserved C-terminal domain DLE02_01269 PF00270 DEAD/DEAH box helicase DLE02_01271 PF00881 Nitroreductase family DLE02_01272 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DLE02_01272 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DLE02_01276 PF01180 Dihydroorotate dehydrogenase DLE02_01277 PF02674 Colicin V production protein DLE02_01278 PF00156 Phosphoribosyl transferase domain DLE02_01281 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DLE02_01281 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DLE02_01282 PF01435 Peptidase family M48 DLE02_01283 PF09424 Yqey-like protein DLE02_01284 PF01165 Ribosomal protein S21 DLE02_01285 PF00814 Glycoprotease family DLE02_01289 PF00069 Protein kinase domain DLE02_01294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01294 PF03466 LysR substrate binding domain DLE02_01295 PF00202 Aminotransferase class-III DLE02_01296 PF00171 Aldehyde dehydrogenase family DLE02_01297 PF00324 Amino acid permease DLE02_01303 PF04076 Bacterial OB fold (BOF) protein DLE02_01308 PF00561 alpha/beta hydrolase fold DLE02_01309 PF03616 Sodium/glutamate symporter DLE02_01311 PF00392 Bacterial regulatory proteins, gntR family DLE02_01311 PF07729 FCD domain DLE02_01321 PF00083 Sugar (and other) transporter DLE02_01321 PF08946 Osmosensory transporter coiled coil DLE02_01324 PF00155 Aminotransferase class I and II DLE02_01325 PF06826 Predicted Permease Membrane Region DLE02_01325 PF02080 TrkA-C domain DLE02_01327 PF04403 Paraquat-inducible protein A DLE02_01328 PF02470 MlaD protein DLE02_01330 PF01177 Asp/Glu/Hydantoin racemase DLE02_01331 PF00892 EamA-like transporter family DLE02_01332 PF07995 Glucose / Sorbosone dehydrogenase DLE02_01336 PF00375 Sodium:dicarboxylate symporter family DLE02_01338 PF00753 Metallo-beta-lactamase superfamily DLE02_01338 PF16123 Hydroxyacylglutathione hydrolase C-terminus DLE02_01339 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01340 PF00005 ABC transporter DLE02_01340 PF09383 NIL domain DLE02_01341 PF03180 NLPA lipoprotein DLE02_01342 PF02844 Phosphoribosylglycinamide synthetase, N domain DLE02_01342 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DLE02_01342 PF02843 Phosphoribosylglycinamide synthetase, C domain DLE02_01343 PF01808 AICARFT/IMPCHase bienzyme DLE02_01343 PF02142 MGS-like domain DLE02_01344 PF02954 Bacterial regulatory protein, Fis family DLE02_01348 PF13932 GidA associated domain DLE02_01348 PF01134 Glucose inhibited division protein A DLE02_01350 PF14403 Circularly permuted ATP-grasp type 2 DLE02_01352 PF08379 Bacterial transglutaminase-like N-terminal region DLE02_01352 PF01841 Transglutaminase-like superfamily DLE02_01354 PF00842 Alanine racemase, C-terminal domain DLE02_01354 PF01168 Alanine racemase, N-terminal domain DLE02_01355 PF00772 DnaB-like helicase N terminal domain DLE02_01355 PF03796 DnaB-like helicase C terminal domain DLE02_01356 PF03948 Ribosomal protein L9, C-terminal domain DLE02_01356 PF01281 Ribosomal protein L9, N-terminal domain DLE02_01357 PF01084 Ribosomal protein S18 DLE02_01358 PF01250 Ribosomal protein S6 DLE02_01359 PF01040 UbiA prenyltransferase family DLE02_01360 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DLE02_01361 PF00510 Cytochrome c oxidase subunit III DLE02_01362 PF00115 Cytochrome C and Quinol oxidase polypeptide I DLE02_01363 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DLE02_01363 PF06481 COX Aromatic Rich Motif DLE02_01365 PF00391 PEP-utilising enzyme, mobile domain DLE02_01365 PF02896 PEP-utilising enzyme, TIM barrel domain DLE02_01365 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DLE02_01366 PF03618 Kinase/pyrophosphorylase DLE02_01368 PF14883 Hypothetical glycosyl hydrolase family 13 DLE02_01368 PF01522 Polysaccharide deacetylase DLE02_01369 PF00535 Glycosyl transferase family 2 DLE02_01370 PF13994 PgaD-like protein DLE02_01372 PF00296 Luciferase-like monooxygenase DLE02_01375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01375 PF03466 LysR substrate binding domain DLE02_01377 PF00472 RF-1 domain DLE02_01377 PF03462 PCRF domain DLE02_01378 PF17827 PrmC N-terminal domain DLE02_01378 PF13847 Methyltransferase domain DLE02_01379 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01380 PF09084 NMT1/THI5 like DLE02_01381 PF12833 Helix-turn-helix domain DLE02_01382 PF00106 short chain dehydrogenase DLE02_01383 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01383 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01383 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01384 PF13193 AMP-binding enzyme C-terminal domain DLE02_01384 PF00501 AMP-binding enzyme DLE02_01385 PF01613 Flavin reductase like domain DLE02_01386 PF00899 ThiF family DLE02_01387 PF03109 ABC1 family DLE02_01390 PF03814 Potassium-transporting ATPase A subunit DLE02_01392 PF02669 K+-transporting ATPase, c chain DLE02_01393 PF13493 Domain of unknown function (DUF4118) DLE02_01393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_01393 PF00512 His Kinase A (phospho-acceptor) domain DLE02_01393 PF02702 Osmosensitive K+ channel His kinase sensor domain DLE02_01394 PF00072 Response regulator receiver domain DLE02_01394 PF00486 Transcriptional regulatory protein, C terminal DLE02_01395 PF00120 Glutamine synthetase, catalytic domain DLE02_01397 PF03232 Ubiquinone biosynthesis protein COQ7 DLE02_01398 PF07690 Major Facilitator Superfamily DLE02_01399 PF17243 POTRA domain TamA domain 1 DLE02_01399 PF01103 Surface antigen DLE02_01399 PF07244 Surface antigen variable number repeat DLE02_01402 PF11791 Aconitate B N-terminal domain DLE02_01402 PF00330 Aconitase family (aconitate hydratase) DLE02_01402 PF06434 Aconitate hydratase 2 N-terminus DLE02_01404 PF00520 Ion transport protein DLE02_01404 PF00027 Cyclic nucleotide-binding domain DLE02_01405 PF07690 Major Facilitator Superfamily DLE02_01408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01408 PF03466 LysR substrate binding domain DLE02_01409 PF04284 Protein of unknown function (DUF441) DLE02_01411 PF00849 RNA pseudouridylate synthase DLE02_01411 PF01479 S4 domain DLE02_01414 PF01479 S4 domain DLE02_01414 PF00849 RNA pseudouridylate synthase DLE02_01415 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DLE02_01416 PF01119 DNA mismatch repair protein, C-terminal domain DLE02_01416 PF08676 MutL C terminal dimerisation domain DLE02_01418 PF17209 Hfq protein DLE02_01420 PF00881 Nitroreductase family DLE02_01422 PF00149 Calcineurin-like phosphoesterase DLE02_01423 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DLE02_01424 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DLE02_01424 PF00749 tRNA synthetases class I (E and Q), catalytic domain DLE02_01425 PF00958 GMP synthase C terminal domain DLE02_01425 PF00117 Glutamine amidotransferase class-I DLE02_01425 PF02540 NAD synthase DLE02_01426 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DLE02_01427 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DLE02_01428 PF13520 Amino acid permease DLE02_01429 PF00171 Aldehyde dehydrogenase family DLE02_01432 PF00465 Iron-containing alcohol dehydrogenase DLE02_01433 PF05970 PIF1-like helicase DLE02_01433 PF14493 Helix-turn-helix domain DLE02_01435 PF06445 GyrI-like small molecule binding domain DLE02_01436 PF02110 Hydroxyethylthiazole kinase family DLE02_01439 PF11940 Domain of unknown function (DUF3458) Ig-like fold DLE02_01439 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DLE02_01439 PF01433 Peptidase family M1 domain DLE02_01441 PF00106 short chain dehydrogenase DLE02_01443 PF01817 Chorismate mutase type II DLE02_01444 PF01037 Lrp/AsnC ligand binding domain DLE02_01446 PF00440 Bacterial regulatory proteins, tetR family DLE02_01447 PF07715 TonB-dependent Receptor Plug Domain DLE02_01447 PF00593 TonB dependent receptor DLE02_01448 PF00924 Mechanosensitive ion channel DLE02_01454 PF07715 TonB-dependent Receptor Plug Domain DLE02_01454 PF00593 TonB dependent receptor DLE02_01456 PF13610 DDE domain DLE02_01457 PF01526 Tn3 transposase DDE domain DLE02_01457 PF13700 Domain of unknown function (DUF4158) DLE02_01458 PF03400 IS1 transposase DLE02_01459 PF13610 DDE domain DLE02_01460 PF00743 Flavin-binding monooxygenase-like DLE02_01461 PF00106 short chain dehydrogenase DLE02_01463 PF17932 Tetracyclin repressor-like, C-terminal domain DLE02_01463 PF00440 Bacterial regulatory proteins, tetR family DLE02_01464 PF02678 Pirin DLE02_01464 PF17954 Quercetinase C-terminal cupin domain DLE02_01466 PF00106 short chain dehydrogenase DLE02_01467 PF00743 Flavin-binding monooxygenase-like DLE02_01469 PF00860 Permease family DLE02_01470 PF00962 Adenosine/AMP deaminase DLE02_01471 PF01292 Prokaryotic cytochrome b561 DLE02_01473 PF01351 Ribonuclease HII DLE02_01474 PF02599 Global regulator protein family DLE02_01475 PF00696 Amino acid kinase family DLE02_01475 PF01842 ACT domain DLE02_01475 PF13840 ACT domain DLE02_01476 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DLE02_01476 PF02272 DHHA1 domain DLE02_01476 PF01411 tRNA synthetases class II (A) DLE02_01477 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DLE02_01477 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DLE02_01478 PF13393 Histidyl-tRNA synthetase DLE02_01479 PF00709 Adenylosuccinate synthetase DLE02_01482 PF00248 Aldo/keto reductase family DLE02_01483 PF13545 Crp-like helix-turn-helix domain DLE02_01483 PF00027 Cyclic nucleotide-binding domain DLE02_01484 PF02566 OsmC-like protein DLE02_01487 PF00004 ATPase family associated with various cellular activities (AAA) DLE02_01487 PF07724 AAA domain (Cdc48 subfamily) DLE02_01487 PF17871 AAA lid domain DLE02_01487 PF10431 C-terminal, D2-small domain, of ClpB protein DLE02_01487 PF02861 Clp amino terminal domain, pathogenicity island component DLE02_01490 PF02926 THUMP domain DLE02_01490 PF10672 S-adenosylmethionine-dependent methyltransferase DLE02_01490 PF01170 Putative RNA methylase family UPF0020 DLE02_01492 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DLE02_01492 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DLE02_01493 PF01979 Amidohydrolase family DLE02_01494 PF13488 Glycine zipper DLE02_01494 PF00691 OmpA family DLE02_01496 PF00043 Glutathione S-transferase, C-terminal domain DLE02_01496 PF13417 Glutathione S-transferase, N-terminal domain DLE02_01497 PF02390 Putative methyltransferase DLE02_01499 PF00043 Glutathione S-transferase, C-terminal domain DLE02_01499 PF02798 Glutathione S-transferase, N-terminal domain DLE02_01501 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_01501 PF13192 Thioredoxin domain DLE02_01505 PF10417 C-terminal domain of 1-Cys peroxiredoxin DLE02_01505 PF00578 AhpC/TSA family DLE02_01506 PF00270 DEAD/DEAH box helicase DLE02_01506 PF11898 Domain of unknown function (DUF3418) DLE02_01506 PF04408 Helicase associated domain (HA2) DLE02_01506 PF00271 Helicase conserved C-terminal domain DLE02_01506 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DLE02_01507 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DLE02_01507 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DLE02_01509 PF07690 Major Facilitator Superfamily DLE02_01510 PF03594 Benzoate membrane transport protein DLE02_01511 PF00106 short chain dehydrogenase DLE02_01512 PF00970 Oxidoreductase FAD-binding domain DLE02_01512 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_01512 PF00175 Oxidoreductase NAD-binding domain DLE02_01513 PF00866 Ring hydroxylating beta subunit DLE02_01514 PF00355 Rieske [2Fe-2S] domain DLE02_01514 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DLE02_01515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01515 PF03466 LysR substrate binding domain DLE02_01517 PF00403 Heavy-metal-associated domain DLE02_01518 PF00376 MerR family regulatory protein DLE02_01518 PF09278 MerR, DNA binding DLE02_01526 PF02601 Exonuclease VII, large subunit DLE02_01526 PF13742 OB-fold nucleic acid binding domain DLE02_01533 PF01810 LysE type translocator DLE02_01534 PF00313 'Cold-shock' DNA-binding domain DLE02_01536 PF03807 NADP oxidoreductase coenzyme F420-dependent DLE02_01536 PF14748 Pyrroline-5-carboxylate reductase dimerisation DLE02_01541 PF07690 Major Facilitator Superfamily DLE02_01542 PF01638 HxlR-like helix-turn-helix DLE02_01548 PF09190 DALR domain DLE02_01548 PF01406 tRNA synthetases class I (C) catalytic domain DLE02_01549 PF00571 CBS domain DLE02_01549 PF01380 SIS domain DLE02_01552 PF03968 OstA-like protein DLE02_01553 PF12399 Branched-chain amino acid ATP-binding cassette transporter DLE02_01553 PF00005 ABC transporter DLE02_01554 PF02321 Outer membrane efflux protein DLE02_01555 PF00664 ABC transporter transmembrane region DLE02_01555 PF00005 ABC transporter DLE02_01555 PF03412 Peptidase C39 family DLE02_01557 PF01205 Uncharacterized protein family UPF0029 DLE02_01558 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_01560 PF01596 O-methyltransferase DLE02_01562 PF11953 Domain of unknown function (DUF3470) DLE02_01562 PF00037 4Fe-4S binding domain DLE02_01564 PF01624 MutS domain I DLE02_01564 PF00488 MutS domain V DLE02_01564 PF05188 MutS domain II DLE02_01564 PF05192 MutS domain III DLE02_01564 PF05190 MutS family domain IV DLE02_01565 PF01037 Lrp/AsnC ligand binding domain DLE02_01566 PF00892 EamA-like transporter family DLE02_01567 PF03707 Bacterial signalling protein N terminal repeat DLE02_01567 PF00990 Diguanylate cyclase, GGDEF domain DLE02_01567 PF00563 EAL domain DLE02_01568 PF03279 Bacterial lipid A biosynthesis acyltransferase DLE02_01570 PF07690 Major Facilitator Superfamily DLE02_01574 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DLE02_01574 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DLE02_01577 PF13419 Haloacid dehalogenase-like hydrolase DLE02_01579 PF04717 Type VI secretion system, phage-baseplate injector DLE02_01579 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DLE02_01579 PF13296 Putative type VI secretion system Rhs element Vgr DLE02_01580 PF05593 RHS Repeat DLE02_01580 PF03527 RHS protein DLE02_01583 PF03466 LysR substrate binding domain DLE02_01583 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01584 PF01566 Natural resistance-associated macrophage protein DLE02_01585 PF03746 LamB/YcsF family DLE02_01586 PF07286 Protein of unknown function (DUF1445) DLE02_01588 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DLE02_01588 PF00364 Biotin-requiring enzyme DLE02_01588 PF02785 Biotin carboxylase C-terminal domain DLE02_01588 PF00289 Biotin carboxylase, N-terminal domain DLE02_01589 PF00654 Voltage gated chloride channel DLE02_01594 PF00440 Bacterial regulatory proteins, tetR family DLE02_01596 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_01596 PF13823 Alcohol dehydrogenase GroES-associated DLE02_01596 PF00107 Zinc-binding dehydrogenase DLE02_01599 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DLE02_01599 PF00289 Biotin carboxylase, N-terminal domain DLE02_01599 PF02785 Biotin carboxylase C-terminal domain DLE02_01600 PF02525 Flavodoxin-like fold DLE02_01601 PF01638 HxlR-like helix-turn-helix DLE02_01604 PF01402 Ribbon-helix-helix protein, copG family DLE02_01604 PF08753 NikR C terminal nickel binding domain DLE02_01605 PF01425 Amidase DLE02_01606 PF00497 Bacterial extracellular solute-binding proteins, family 3 DLE02_01607 PF00005 ABC transporter DLE02_01612 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DLE02_01615 PF05947 Type VI secretion system, TssF DLE02_01618 PF06761 Intracellular multiplication and human macrophage-killing DLE02_01618 PF14331 ImcF-related N-terminal domain DLE02_01618 PF06744 Type VI secretion protein IcmF C-terminal DLE02_01620 PF00691 OmpA family DLE02_01620 PF01389 OmpA-like transmembrane domain DLE02_01622 PF00004 ATPase family associated with various cellular activities (AAA) DLE02_01622 PF07724 AAA domain (Cdc48 subfamily) DLE02_01622 PF17871 AAA lid domain DLE02_01622 PF10431 C-terminal, D2-small domain, of ClpB protein DLE02_01623 PF06812 ImpA, N-terminal, type VI secretion system DLE02_01624 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DLE02_01628 PF03466 LysR substrate binding domain DLE02_01628 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DLE02_01631 PF07690 Major Facilitator Superfamily DLE02_01634 PF02677 Epoxyqueuosine reductase QueH DLE02_01636 PF09278 MerR, DNA binding DLE02_01636 PF00376 MerR family regulatory protein DLE02_01639 PF00701 Dihydrodipicolinate synthetase family DLE02_01641 PF00392 Bacterial regulatory proteins, gntR family DLE02_01642 PF05544 Proline racemase DLE02_01643 PF01266 FAD dependent oxidoreductase DLE02_01645 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_01645 PF04324 BFD-like [2Fe-2S] binding domain DLE02_01647 PF00083 Sugar (and other) transporter DLE02_01648 PF00171 Aldehyde dehydrogenase family DLE02_01649 PF13520 Amino acid permease DLE02_01650 PF03313 Serine dehydratase alpha chain DLE02_01650 PF03315 Serine dehydratase beta chain DLE02_01651 PF00171 Aldehyde dehydrogenase family DLE02_01651 PF01575 MaoC like domain DLE02_01652 PF05138 Phenylacetic acid catabolic protein DLE02_01653 PF06243 Phenylacetic acid degradation B DLE02_01654 PF05138 Phenylacetic acid catabolic protein DLE02_01655 PF01883 Iron-sulfur cluster assembly protein DLE02_01656 PF00970 Oxidoreductase FAD-binding domain DLE02_01656 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_01656 PF00175 Oxidoreductase NAD-binding domain DLE02_01657 PF00378 Enoyl-CoA hydratase/isomerase DLE02_01658 PF00378 Enoyl-CoA hydratase/isomerase DLE02_01659 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DLE02_01659 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DLE02_01659 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DLE02_01660 PF00108 Thiolase, N-terminal domain DLE02_01660 PF02803 Thiolase, C-terminal domain DLE02_01661 PF00501 AMP-binding enzyme DLE02_01661 PF14535 AMP-binding enzyme C-terminal domain DLE02_01662 PF07848 PaaX-like protein DLE02_01662 PF08223 PaaX-like protein C-terminal domain DLE02_01663 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_01664 PF03061 Thioesterase superfamily DLE02_01671 PF00199 Catalase DLE02_01672 PF01292 Prokaryotic cytochrome b561 DLE02_01676 PF12697 Alpha/beta hydrolase family DLE02_01677 PF01613 Flavin reductase like domain DLE02_01678 PF00296 Luciferase-like monooxygenase DLE02_01679 PF00171 Aldehyde dehydrogenase family DLE02_01680 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DLE02_01682 PF00171 Aldehyde dehydrogenase family DLE02_01683 PF02627 Carboxymuconolactone decarboxylase family DLE02_01684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01684 PF03466 LysR substrate binding domain DLE02_01685 PF02525 Flavodoxin-like fold DLE02_01686 PF01614 Bacterial transcriptional regulator DLE02_01686 PF09339 IclR helix-turn-helix domain DLE02_01687 PF01494 FAD binding domain DLE02_01688 PF07702 UTRA domain DLE02_01688 PF00392 Bacterial regulatory proteins, gntR family DLE02_01690 PF00005 ABC transporter DLE02_01690 PF08402 TOBE domain DLE02_01691 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01692 PF01266 FAD dependent oxidoreductase DLE02_01693 PF00266 Aminotransferase class-V DLE02_01694 PF13419 Haloacid dehalogenase-like hydrolase DLE02_01695 PF07690 Major Facilitator Superfamily DLE02_01696 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01696 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01696 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01697 PF02515 CoA-transferase family III DLE02_01698 PF09339 IclR helix-turn-helix domain DLE02_01699 PF00378 Enoyl-CoA hydratase/isomerase DLE02_01700 PF03060 Nitronate monooxygenase DLE02_01701 PF07690 Major Facilitator Superfamily DLE02_01702 PF09339 IclR helix-turn-helix domain DLE02_01703 PF02803 Thiolase, C-terminal domain DLE02_01703 PF00108 Thiolase, N-terminal domain DLE02_01704 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DLE02_01704 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DLE02_01704 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DLE02_01706 PF00378 Enoyl-CoA hydratase/isomerase DLE02_01707 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01707 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01707 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01708 PF07690 Major Facilitator Superfamily DLE02_01709 PF01144 Coenzyme A transferase DLE02_01710 PF01144 Coenzyme A transferase DLE02_01712 PF07690 Major Facilitator Superfamily DLE02_01714 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01714 PF12806 Acetyl-CoA dehydrogenase C-terminal like DLE02_01714 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01714 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01717 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01717 PF03466 LysR substrate binding domain DLE02_01718 PF00682 HMGL-like DLE02_01719 PF18140 Propionyl-coenzyme A carboxylase BT domain DLE02_01719 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DLE02_01719 PF00364 Biotin-requiring enzyme DLE02_01719 PF00289 Biotin carboxylase, N-terminal domain DLE02_01719 PF02785 Biotin carboxylase C-terminal domain DLE02_01720 PF00378 Enoyl-CoA hydratase/isomerase DLE02_01721 PF01039 Carboxyl transferase domain DLE02_01722 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01722 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01722 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01723 PF00440 Bacterial regulatory proteins, tetR family DLE02_01724 PF13193 AMP-binding enzyme C-terminal domain DLE02_01724 PF00501 AMP-binding enzyme DLE02_01728 PF03466 LysR substrate binding domain DLE02_01728 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01736 PF02464 Competence-damaged protein DLE02_01736 PF00994 Probable molybdopterin binding domain DLE02_01736 PF18146 Damage-inducible protein CinA KH domain DLE02_01738 PF18011 C-terminal domain found in long catalases DLE02_01738 PF06628 Catalase-related immune-responsive DLE02_01738 PF00199 Catalase DLE02_01743 PF00717 Peptidase S24-like DLE02_01745 PF01037 Lrp/AsnC ligand binding domain DLE02_01745 PF13404 AsnC-type helix-turn-helix domain DLE02_01747 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_01747 PF00512 His Kinase A (phospho-acceptor) domain DLE02_01747 PF09308 LuxQ, periplasmic DLE02_01747 PF00072 Response regulator receiver domain DLE02_01748 PF00072 Response regulator receiver domain DLE02_01750 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01751 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01752 PF00005 ABC transporter DLE02_01753 PF00497 Bacterial extracellular solute-binding proteins, family 3 DLE02_01754 PF00497 Bacterial extracellular solute-binding proteins, family 3 DLE02_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01755 PF03466 LysR substrate binding domain DLE02_01756 PF01810 LysE type translocator DLE02_01757 PF00266 Aminotransferase class-V DLE02_01759 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_01760 PF00581 Rhodanese-like domain DLE02_01762 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01762 PF03466 LysR substrate binding domain DLE02_01763 PF02798 Glutathione S-transferase, N-terminal domain DLE02_01764 PF02798 Glutathione S-transferase, N-terminal domain DLE02_01764 PF14834 Glutathione S-transferase, C-terminal domain DLE02_01765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01765 PF03466 LysR substrate binding domain DLE02_01766 PF03788 LrgA family DLE02_01767 PF04172 LrgB-like family DLE02_01768 PF00392 Bacterial regulatory proteins, gntR family DLE02_01768 PF00155 Aminotransferase class I and II DLE02_01771 PF07690 Major Facilitator Superfamily DLE02_01772 PF16957 Malonate decarboxylase, alpha subunit, transporter DLE02_01773 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DLE02_01774 PF06857 Malonate decarboxylase delta subunit (MdcD) DLE02_01775 PF01039 Carboxyl transferase domain DLE02_01777 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DLE02_01778 PF00698 Acyl transferase domain DLE02_01781 PF03466 LysR substrate binding domain DLE02_01781 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01782 PF00155 Aminotransferase class I and II DLE02_01782 PF00392 Bacterial regulatory proteins, gntR family DLE02_01784 PF02322 Cytochrome bd terminal oxidase subunit II DLE02_01785 PF01654 Cytochrome bd terminal oxidase subunit I DLE02_01787 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01787 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01787 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01788 PF00296 Luciferase-like monooxygenase DLE02_01789 PF00083 Sugar (and other) transporter DLE02_01792 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DLE02_01793 PF00005 ABC transporter DLE02_01794 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01795 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DLE02_01796 PF01177 Asp/Glu/Hydantoin racemase DLE02_01797 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DLE02_01799 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01799 PF03466 LysR substrate binding domain DLE02_01801 PF01979 Amidohydrolase family DLE02_01801 PF13382 Adenine deaminase C-terminal domain DLE02_01803 PF03960 ArsC family DLE02_01804 PF01022 Bacterial regulatory protein, arsR family DLE02_01805 PF01758 Sodium Bile acid symporter family DLE02_01806 PF03466 LysR substrate binding domain DLE02_01806 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01809 PF13192 Thioredoxin domain DLE02_01809 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_01812 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_01813 PF00588 SpoU rRNA Methylase family DLE02_01814 PF07733 Bacterial DNA polymerase III alpha NTPase domain DLE02_01814 PF14579 Helix-hairpin-helix motif DLE02_01814 PF02811 PHP domain DLE02_01814 PF01336 OB-fold nucleic acid binding domain DLE02_01814 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DLE02_01815 PF00710 Asparaginase, N-terminal DLE02_01815 PF17763 Glutaminase/Asparaginase C-terminal domain DLE02_01816 PF00375 Sodium:dicarboxylate symporter family DLE02_01817 PF00155 Aminotransferase class I and II DLE02_01818 PF01641 SelR domain DLE02_01819 PF00255 Glutathione peroxidase DLE02_01820 PF12833 Helix-turn-helix domain DLE02_01820 PF12852 Cupin DLE02_01822 PF00155 Aminotransferase class I and II DLE02_01823 PF01909 Nucleotidyltransferase domain DLE02_01823 PF08335 GlnD PII-uridylyltransferase DLE02_01823 PF01966 HD domain DLE02_01824 PF02222 ATP-grasp domain DLE02_01826 PF05437 Branched-chain amino acid transport protein (AzlD) DLE02_01827 PF03591 AzlC protein DLE02_01832 PF06071 Protein of unknown function (DUF933) DLE02_01832 PF01926 50S ribosome-binding GTPase DLE02_01833 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01834 PF09383 NIL domain DLE02_01834 PF00005 ABC transporter DLE02_01835 PF03180 NLPA lipoprotein DLE02_01836 PF03180 NLPA lipoprotein DLE02_01837 PF00296 Luciferase-like monooxygenase DLE02_01839 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01839 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01842 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01843 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01844 PF00005 ABC transporter DLE02_01846 PF01037 Lrp/AsnC ligand binding domain DLE02_01847 PF01709 Transcriptional regulator DLE02_01849 PF00440 Bacterial regulatory proteins, tetR family DLE02_01854 PF03466 LysR substrate binding domain DLE02_01854 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_01856 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DLE02_01858 PF00892 EamA-like transporter family DLE02_01862 PF00577 Outer membrane usher protein DLE02_01862 PF13953 PapC C-terminal domain DLE02_01862 PF13954 PapC N-terminal domain DLE02_01863 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DLE02_01863 PF02753 Pili assembly chaperone PapD, C-terminal domain DLE02_01864 PF16970 Type-1 fimbrial protein, A DLE02_01867 PF06968 Biotin and Thiamin Synthesis associated domain DLE02_01867 PF04055 Radical SAM superfamily DLE02_01868 PF08331 Domain of unknown function (DUF1730) DLE02_01869 PF03853 YjeF-related protein N-terminus DLE02_01869 PF01256 Carbohydrate kinase DLE02_01870 PF02075 Crossover junction endodeoxyribonuclease RuvC DLE02_01873 PF00905 Penicillin binding protein transpeptidase domain DLE02_01877 PF02772 S-adenosylmethionine synthetase, central domain DLE02_01877 PF00438 S-adenosylmethionine synthetase, N-terminal domain DLE02_01877 PF02773 S-adenosylmethionine synthetase, C-terminal domain DLE02_01878 PF02779 Transketolase, pyrimidine binding domain DLE02_01878 PF02780 Transketolase, C-terminal domain DLE02_01878 PF00456 Transketolase, thiamine diphosphate binding domain DLE02_01880 PF04264 YceI-like domain DLE02_01882 PF09992 Phosphodiester glycosidase DLE02_01884 PF05958 tRNA (Uracil-5-)-methyltransferase DLE02_01885 PF04229 GrpB protein DLE02_01886 PF00171 Aldehyde dehydrogenase family DLE02_01886 PF01619 Proline dehydrogenase DLE02_01886 PF14850 DNA-binding domain of Proline dehydrogenase DLE02_01886 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DLE02_01887 PF01037 Lrp/AsnC ligand binding domain DLE02_01888 PF00474 Sodium:solute symporter family DLE02_01889 PF02146 Sir2 family DLE02_01890 PF01597 Glycine cleavage H-protein DLE02_01891 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DLE02_01891 PF12833 Helix-turn-helix domain DLE02_01893 PF00664 ABC transporter transmembrane region DLE02_01893 PF00005 ABC transporter DLE02_01894 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DLE02_01895 PF06912 Protein of unknown function (DUF1275) DLE02_01896 PF00375 Sodium:dicarboxylate symporter family DLE02_01899 PF08007 Cupin superfamily protein DLE02_01900 PF02545 Maf-like protein DLE02_01902 PF00162 Phosphoglycerate kinase DLE02_01904 PF01116 Fructose-bisphosphate aldolase class-II DLE02_01905 PF09312 SurA N-terminal domain DLE02_01905 PF00639 PPIC-type PPIASE domain DLE02_01906 PF03968 OstA-like protein DLE02_01906 PF04453 LPS transport system D DLE02_01907 PF01636 Phosphotransferase enzyme family DLE02_01908 PF00483 Nucleotidyl transferase DLE02_01909 PF02527 rRNA small subunit methyltransferase G DLE02_01910 PF13614 AAA domain DLE02_01911 PF17762 HTH domain found in ParB protein DLE02_01911 PF02195 ParB-like nuclease domain DLE02_01912 PF01618 MotA/TolQ/ExbB proton channel family DLE02_01914 PF00664 ABC transporter transmembrane region DLE02_01914 PF00005 ABC transporter DLE02_01915 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DLE02_01916 PF02348 Cytidylyltransferase DLE02_01917 PF09115 DNA polymerase III, delta subunit, C terminal DLE02_01919 PF01026 TatD related DNase DLE02_01922 PF02501 Type II secretion system (T2SS), protein I DLE02_01922 PF07963 Prokaryotic N-terminal methylation motif DLE02_01923 PF07963 Prokaryotic N-terminal methylation motif DLE02_01923 PF11612 Type II secretion system (T2SS), protein J DLE02_01924 PF03934 Type II secretion system (T2SS), protein K DLE02_01926 PF03167 Uracil DNA glycosylase superfamily DLE02_01928 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DLE02_01930 PF02224 Cytidylate kinase DLE02_01931 PF00575 S1 RNA binding domain DLE02_01932 PF00216 Bacterial DNA-binding protein DLE02_01934 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DLE02_01936 PF00743 Flavin-binding monooxygenase-like DLE02_01938 PF03969 AFG1-like ATPase DLE02_01939 PF01274 Malate synthase DLE02_01941 PF02472 Biopolymer transport protein ExbD/TolR DLE02_01942 PF02472 Biopolymer transport protein ExbD/TolR DLE02_01943 PF01618 MotA/TolQ/ExbB proton channel family DLE02_01945 PF00593 TonB dependent receptor DLE02_01945 PF07715 TonB-dependent Receptor Plug Domain DLE02_01949 PF01432 Peptidase family M3 DLE02_01950 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01951 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_01952 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DLE02_01952 PF00005 ABC transporter DLE02_01955 PF00459 Inositol monophosphatase family DLE02_01957 PF01649 Ribosomal protein S20 DLE02_01958 PF13460 NAD(P)H-binding DLE02_01959 PF03737 Aldolase/RraA DLE02_01963 PF02559 CarD-like/TRCF domain DLE02_01963 PF00270 DEAD/DEAH box helicase DLE02_01963 PF00271 Helicase conserved C-terminal domain DLE02_01963 PF03461 TRCF domain DLE02_01963 PF17757 UvrB interaction domain DLE02_01965 PF00211 Adenylate and Guanylate cyclase catalytic domain DLE02_01966 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_01967 PF00012 Hsp70 protein DLE02_01968 PF07743 HSCB C-terminal oligomerisation domain DLE02_01968 PF00226 DnaJ domain DLE02_01969 PF01521 Iron-sulphur cluster biosynthesis DLE02_01970 PF01592 NifU-like N terminal domain DLE02_01971 PF00266 Aminotransferase class-V DLE02_01972 PF02082 Transcriptional regulator DLE02_01975 PF00216 Bacterial DNA-binding protein DLE02_01976 PF09312 SurA N-terminal domain DLE02_01976 PF00639 PPIC-type PPIASE domain DLE02_01977 PF12852 Cupin DLE02_01977 PF12833 Helix-turn-helix domain DLE02_01978 PF00487 Fatty acid desaturase DLE02_01979 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01979 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01979 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_01980 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_01980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_01981 PF03109 ABC1 family DLE02_01983 PF04073 Aminoacyl-tRNA editing domain DLE02_01984 PF04183 IucA / IucC family DLE02_01984 PF06276 Ferric iron reductase FhuF-like transporter DLE02_01985 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DLE02_01986 PF07690 Major Facilitator Superfamily DLE02_01987 PF04183 IucA / IucC family DLE02_01987 PF06276 Ferric iron reductase FhuF-like transporter DLE02_01988 PF04183 IucA / IucC family DLE02_01988 PF06276 Ferric iron reductase FhuF-like transporter DLE02_01991 PF00593 TonB dependent receptor DLE02_01991 PF07715 TonB-dependent Receptor Plug Domain DLE02_01996 PF13419 Haloacid dehalogenase-like hydrolase DLE02_01998 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DLE02_01999 PF02277 Phosphoribosyltransferase DLE02_02002 PF02654 Cobalamin-5-phosphate synthase DLE02_02003 PF00793 DAHP synthetase I family DLE02_02004 PF01925 Sulfite exporter TauE/SafE DLE02_02008 PF07715 TonB-dependent Receptor Plug Domain DLE02_02008 PF00593 TonB dependent receptor DLE02_02009 PF02684 Lipid-A-disaccharide synthetase DLE02_02011 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DLE02_02012 PF00005 ABC transporter DLE02_02019 PF01230 HIT domain DLE02_02025 PF08241 Methyltransferase domain DLE02_02026 PF00561 alpha/beta hydrolase fold DLE02_02027 PF01053 Cys/Met metabolism PLP-dependent enzyme DLE02_02029 PF02575 YbaB/EbfC DNA-binding family DLE02_02030 PF02132 RecR protein DLE02_02030 PF13662 Toprim domain DLE02_02031 PF01612 3'-5' exonuclease DLE02_02031 PF00570 HRDC domain DLE02_02035 PF05166 YcgL domain DLE02_02037 PF17862 AAA+ lid domain DLE02_02037 PF00004 ATPase family associated with various cellular activities (AAA) DLE02_02037 PF01434 Peptidase family M41 DLE02_02039 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_02040 PF05175 Methyltransferase small domain DLE02_02041 PF01264 Chorismate synthase DLE02_02042 PF00990 Diguanylate cyclase, GGDEF domain DLE02_02042 PF08448 PAS fold DLE02_02045 PF04055 Radical SAM superfamily DLE02_02046 PF00676 Dehydrogenase E1 component DLE02_02047 PF02780 Transketolase, C-terminal domain DLE02_02047 PF02779 Transketolase, pyrimidine binding domain DLE02_02048 PF02817 e3 binding domain DLE02_02048 PF00364 Biotin-requiring enzyme DLE02_02048 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DLE02_02049 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DLE02_02049 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02050 PF00106 short chain dehydrogenase DLE02_02051 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_02051 PF00107 Zinc-binding dehydrogenase DLE02_02052 PF01062 Bestrophin, RFP-TM, chloride channel DLE02_02053 PF02954 Bacterial regulatory protein, Fis family DLE02_02053 PF00072 Response regulator receiver domain DLE02_02053 PF00158 Sigma-54 interaction domain DLE02_02054 PF04273 Putative phosphatase (DUF442) DLE02_02054 PF00753 Metallo-beta-lactamase superfamily DLE02_02055 PF00753 Metallo-beta-lactamase superfamily DLE02_02055 PF04273 Putative phosphatase (DUF442) DLE02_02056 PF01925 Sulfite exporter TauE/SafE DLE02_02059 PF12833 Helix-turn-helix domain DLE02_02059 PF06445 GyrI-like small molecule binding domain DLE02_02060 PF01638 HxlR-like helix-turn-helix DLE02_02061 PF02525 Flavodoxin-like fold DLE02_02063 PF00392 Bacterial regulatory proteins, gntR family DLE02_02063 PF07702 UTRA domain DLE02_02066 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DLE02_02067 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_02068 PF00005 ABC transporter DLE02_02071 PF00083 Sugar (and other) transporter DLE02_02072 PF00593 TonB dependent receptor DLE02_02072 PF07715 TonB-dependent Receptor Plug Domain DLE02_02073 PF00206 Lyase DLE02_02073 PF10415 Fumarase C C-terminus DLE02_02076 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02076 PF03466 LysR substrate binding domain DLE02_02077 PF03466 LysR substrate binding domain DLE02_02077 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02078 PF02803 Thiolase, C-terminal domain DLE02_02078 PF00108 Thiolase, N-terminal domain DLE02_02079 PF02667 Short chain fatty acid transporter DLE02_02080 PF01144 Coenzyme A transferase DLE02_02081 PF01144 Coenzyme A transferase DLE02_02082 PF03466 LysR substrate binding domain DLE02_02082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02086 PF12833 Helix-turn-helix domain DLE02_02086 PF06719 AraC-type transcriptional regulator N-terminus DLE02_02087 PF07690 Major Facilitator Superfamily DLE02_02088 PF01738 Dienelactone hydrolase family DLE02_02091 PF01613 Flavin reductase like domain DLE02_02093 PF12833 Helix-turn-helix domain DLE02_02093 PF14525 AraC-binding-like domain DLE02_02094 PF00970 Oxidoreductase FAD-binding domain DLE02_02094 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_02094 PF00175 Oxidoreductase NAD-binding domain DLE02_02095 PF00866 Ring hydroxylating beta subunit DLE02_02096 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DLE02_02096 PF00355 Rieske [2Fe-2S] domain DLE02_02097 PF03459 TOBE domain DLE02_02097 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02099 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_02100 PF03459 TOBE domain DLE02_02100 PF00005 ABC transporter DLE02_02101 PF00106 short chain dehydrogenase DLE02_02102 PF00857 Isochorismatase family DLE02_02102 PF00550 Phosphopantetheine attachment site DLE02_02104 PF00149 Calcineurin-like phosphoesterase DLE02_02105 PF13090 Polyphosphate kinase C-terminal domain 2 DLE02_02105 PF17941 Polyphosphate kinase C-terminal domain 1 DLE02_02105 PF13089 Polyphosphate kinase N-terminal domain DLE02_02105 PF02503 Polyphosphate kinase middle domain DLE02_02106 PF12706 Beta-lactamase superfamily domain DLE02_02107 PF03070 TENA/THI-4/PQQC family DLE02_02108 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DLE02_02109 PF13186 Iron-sulfur cluster-binding domain DLE02_02109 PF04055 Radical SAM superfamily DLE02_02110 PF01244 Membrane dipeptidase (Peptidase family M19) DLE02_02114 PF13091 PLD-like domain DLE02_02117 PF00199 Catalase DLE02_02119 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_02119 PF00107 Zinc-binding dehydrogenase DLE02_02121 PF00419 Fimbrial protein DLE02_02122 PF13954 PapC N-terminal domain DLE02_02122 PF00577 Outer membrane usher protein DLE02_02122 PF13953 PapC C-terminal domain DLE02_02123 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DLE02_02123 PF02753 Pili assembly chaperone PapD, C-terminal domain DLE02_02124 PF16970 Type-1 fimbrial protein, A DLE02_02128 PF01266 FAD dependent oxidoreductase DLE02_02131 PF01593 Flavin containing amine oxidoreductase DLE02_02132 PF00743 Flavin-binding monooxygenase-like DLE02_02133 PF12146 Serine aminopeptidase, S33 DLE02_02134 PF02321 Outer membrane efflux protein DLE02_02135 PF00873 AcrB/AcrD/AcrF family DLE02_02136 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DLE02_02136 PF00529 HlyD membrane-fusion protein of T1SS DLE02_02137 PF00486 Transcriptional regulatory protein, C terminal DLE02_02137 PF00072 Response regulator receiver domain DLE02_02138 PF16527 Two-component sensor protein CpxA, periplasmic domain DLE02_02138 PF00672 HAMP domain DLE02_02138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_02138 PF00512 His Kinase A (phospho-acceptor) domain DLE02_02140 PF02311 AraC-like ligand binding domain DLE02_02140 PF12833 Helix-turn-helix domain DLE02_02141 PF12146 Serine aminopeptidase, S33 DLE02_02152 PF04607 Region found in RelA / SpoT proteins DLE02_02152 PF02824 TGS domain DLE02_02152 PF13291 ACT domain DLE02_02154 PF01975 Survival protein SurE DLE02_02159 PF07690 Major Facilitator Superfamily DLE02_02160 PF13533 Biotin-lipoyl like DLE02_02161 PF01425 Amidase DLE02_02162 PF00196 Bacterial regulatory proteins, luxR family DLE02_02176 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DLE02_02177 PF14572 Phosphoribosyl synthetase-associated domain DLE02_02177 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DLE02_02181 PF00005 ABC transporter DLE02_02182 PF01032 FecCD transport family DLE02_02184 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_02184 PF00107 Zinc-binding dehydrogenase DLE02_02187 PF12833 Helix-turn-helix domain DLE02_02187 PF06719 AraC-type transcriptional regulator N-terminus DLE02_02188 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DLE02_02188 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DLE02_02189 PF07690 Major Facilitator Superfamily DLE02_02190 PF01370 NAD dependent epimerase/dehydratase family DLE02_02191 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02191 PF03466 LysR substrate binding domain DLE02_02193 PF00920 Dehydratase family DLE02_02194 PF00171 Aldehyde dehydrogenase family DLE02_02197 PF00529 HlyD membrane-fusion protein of T1SS DLE02_02197 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DLE02_02201 PF03737 Aldolase/RraA DLE02_02202 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DLE02_02202 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DLE02_02202 PF01842 ACT domain DLE02_02203 PF07690 Major Facilitator Superfamily DLE02_02207 PF03466 LysR substrate binding domain DLE02_02207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02209 PF08450 SMP-30/Gluconolactonase/LRE-like region DLE02_02210 PF07702 UTRA domain DLE02_02210 PF00392 Bacterial regulatory proteins, gntR family DLE02_02212 PF04909 Amidohydrolase DLE02_02213 PF07690 Major Facilitator Superfamily DLE02_02216 PF13018 Extended Signal Peptide of Type V secretion system DLE02_02216 PF13332 Hemagglutinin repeat DLE02_02216 PF05860 haemagglutination activity domain DLE02_02216 PF04829 Pre-toxin domain with VENN motif DLE02_02217 PF08479 POTRA domain, ShlB-type DLE02_02217 PF17287 POTRA domain DLE02_02217 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DLE02_02219 PF01546 Peptidase family M20/M25/M40 DLE02_02219 PF07687 Peptidase dimerisation domain DLE02_02221 PF02254 TrkA-N domain DLE02_02221 PF00999 Sodium/hydrogen exchanger family DLE02_02222 PF07995 Glucose / Sorbosone dehydrogenase DLE02_02223 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02223 PF03466 LysR substrate binding domain DLE02_02224 PF00857 Isochorismatase family DLE02_02226 PF08359 YsiA-like protein, C-terminal region DLE02_02226 PF00440 Bacterial regulatory proteins, tetR family DLE02_02227 PF12706 Beta-lactamase superfamily domain DLE02_02229 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02231 PF09278 MerR, DNA binding DLE02_02231 PF00376 MerR family regulatory protein DLE02_02232 PF01872 RibD C-terminal domain DLE02_02233 PF00106 short chain dehydrogenase DLE02_02234 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DLE02_02234 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02235 PF01047 MarR family DLE02_02236 PF07859 alpha/beta hydrolase fold DLE02_02239 PF00199 Catalase DLE02_02239 PF06628 Catalase-related immune-responsive DLE02_02240 PF00561 alpha/beta hydrolase fold DLE02_02242 PF00171 Aldehyde dehydrogenase family DLE02_02243 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_02243 PF00107 Zinc-binding dehydrogenase DLE02_02244 PF00474 Sodium:solute symporter family DLE02_02245 PF04341 Protein of unknown function, DUF485 DLE02_02246 PF13193 AMP-binding enzyme C-terminal domain DLE02_02246 PF00501 AMP-binding enzyme DLE02_02247 PF02954 Bacterial regulatory protein, Fis family DLE02_02247 PF06506 Propionate catabolism activator DLE02_02247 PF00158 Sigma-54 interaction domain DLE02_02249 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_02249 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_02249 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_02253 PF00171 Aldehyde dehydrogenase family DLE02_02255 PF07690 Major Facilitator Superfamily DLE02_02256 PF00920 Dehydratase family DLE02_02257 PF00392 Bacterial regulatory proteins, gntR family DLE02_02257 PF07729 FCD domain DLE02_02259 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02259 PF03466 LysR substrate binding domain DLE02_02260 PF13378 Enolase C-terminal domain-like DLE02_02260 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DLE02_02261 PF02426 Muconolactone delta-isomerase DLE02_02262 PF00775 Dioxygenase DLE02_02262 PF04444 Catechol dioxygenase N terminus DLE02_02263 PF01144 Coenzyme A transferase DLE02_02264 PF01144 Coenzyme A transferase DLE02_02265 PF02803 Thiolase, C-terminal domain DLE02_02265 PF00108 Thiolase, N-terminal domain DLE02_02266 PF12146 Serine aminopeptidase, S33 DLE02_02267 PF01804 Penicillin amidase DLE02_02268 PF00171 Aldehyde dehydrogenase family DLE02_02270 PF02728 Copper amine oxidase, N3 domain DLE02_02270 PF02727 Copper amine oxidase, N2 domain DLE02_02270 PF07833 Copper amine oxidase N-terminal domain DLE02_02270 PF01179 Copper amine oxidase, enzyme domain DLE02_02271 PF12833 Helix-turn-helix domain DLE02_02271 PF02311 AraC-like ligand binding domain DLE02_02272 PF01613 Flavin reductase like domain DLE02_02273 PF00175 Oxidoreductase NAD-binding domain DLE02_02273 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_02276 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DLE02_02276 PF00355 Rieske [2Fe-2S] domain DLE02_02279 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DLE02_02280 PF01425 Amidase DLE02_02282 PF07690 Major Facilitator Superfamily DLE02_02284 PF00106 short chain dehydrogenase DLE02_02287 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_02287 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_02287 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_02288 PF03466 LysR substrate binding domain DLE02_02288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02289 PF09339 IclR helix-turn-helix domain DLE02_02289 PF01614 Bacterial transcriptional regulator DLE02_02290 PF00753 Metallo-beta-lactamase superfamily DLE02_02292 PF04143 Sulphur transport DLE02_02294 PF13360 PQQ-like domain DLE02_02294 PF01011 PQQ enzyme repeat DLE02_02295 PF04966 Carbohydrate-selective porin, OprB family DLE02_02296 PF05048 Periplasmic copper-binding protein (NosD) DLE02_02297 PF01487 Type I 3-dehydroquinase DLE02_02298 PF00775 Dioxygenase DLE02_02299 PF00775 Dioxygenase DLE02_02299 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DLE02_02300 PF02627 Carboxymuconolactone decarboxylase family DLE02_02301 PF07690 Major Facilitator Superfamily DLE02_02302 PF00561 alpha/beta hydrolase fold DLE02_02303 PF10397 Adenylosuccinate lyase C-terminus DLE02_02303 PF00206 Lyase DLE02_02304 PF02803 Thiolase, C-terminal domain DLE02_02304 PF00108 Thiolase, N-terminal domain DLE02_02305 PF01144 Coenzyme A transferase DLE02_02306 PF01144 Coenzyme A transferase DLE02_02307 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DLE02_02308 PF04977 Septum formation initiator DLE02_02309 PF04239 Protein of unknown function (DUF421) DLE02_02310 PF00113 Enolase, C-terminal TIM barrel domain DLE02_02310 PF03952 Enolase, N-terminal domain DLE02_02311 PF00793 DAHP synthetase I family DLE02_02312 PF06418 CTP synthase N-terminus DLE02_02312 PF00117 Glutamine amidotransferase class-I DLE02_02318 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02318 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DLE02_02321 PF00793 DAHP synthetase I family DLE02_02322 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DLE02_02323 PF00004 ATPase family associated with various cellular activities (AAA) DLE02_02323 PF10431 C-terminal, D2-small domain, of ClpB protein DLE02_02323 PF17871 AAA lid domain DLE02_02323 PF07724 AAA domain (Cdc48 subfamily) DLE02_02323 PF02861 Clp amino terminal domain, pathogenicity island component DLE02_02324 PF02617 ATP-dependent Clp protease adaptor protein ClpS DLE02_02326 PF01118 Semialdehyde dehydrogenase, NAD binding domain DLE02_02326 PF02774 Semialdehyde dehydrogenase, dimerisation domain DLE02_02329 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DLE02_02330 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_02330 PF00585 C-terminal regulatory domain of Threonine dehydratase DLE02_02331 PF02080 TrkA-C domain DLE02_02331 PF02254 TrkA-N domain DLE02_02332 PF02386 Cation transport protein DLE02_02333 PF02253 Phospholipase A1 DLE02_02334 PF08367 Peptidase M16C associated DLE02_02334 PF00675 Insulinase (Peptidase family M16) DLE02_02334 PF05193 Peptidase M16 inactive domain DLE02_02335 PF07715 TonB-dependent Receptor Plug Domain DLE02_02335 PF00593 TonB dependent receptor DLE02_02336 PF00294 pfkB family carbohydrate kinase DLE02_02338 PF07290 Protein of unknown function (DUF1449) DLE02_02340 PF01654 Cytochrome bd terminal oxidase subunit I DLE02_02341 PF02322 Cytochrome bd terminal oxidase subunit II DLE02_02342 PF08173 Membrane bound YbgT-like protein DLE02_02345 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DLE02_02347 PF00448 SRP54-type protein, GTPase domain DLE02_02347 PF02881 SRP54-type protein, helical bundle domain DLE02_02352 PF00571 CBS domain DLE02_02352 PF00478 IMP dehydrogenase / GMP reductase domain DLE02_02353 PF00202 Aminotransferase class-III DLE02_02354 PF00462 Glutaredoxin DLE02_02356 PF03466 LysR substrate binding domain DLE02_02356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02357 PF00557 Metallopeptidase family M24 DLE02_02358 PF05525 Branched-chain amino acid transport protein DLE02_02363 PF00381 PTS HPr component phosphorylation site DLE02_02363 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DLE02_02363 PF00391 PEP-utilising enzyme, mobile domain DLE02_02363 PF05524 PEP-utilising enzyme, N-terminal DLE02_02363 PF02896 PEP-utilising enzyme, TIM barrel domain DLE02_02364 PF00294 pfkB family carbohydrate kinase DLE02_02365 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DLE02_02365 PF02378 Phosphotransferase system, EIIC DLE02_02370 PF00563 EAL domain DLE02_02370 PF00990 Diguanylate cyclase, GGDEF domain DLE02_02370 PF03707 Bacterial signalling protein N terminal repeat DLE02_02372 PF07995 Glucose / Sorbosone dehydrogenase DLE02_02373 PF02586 SOS response associated peptidase (SRAP) DLE02_02374 PF01740 STAS domain DLE02_02374 PF00916 Sulfate permease family DLE02_02375 PF05922 Peptidase inhibitor I9 DLE02_02375 PF00082 Subtilase family DLE02_02379 PF00266 Aminotransferase class-V DLE02_02380 PF01037 Lrp/AsnC ligand binding domain DLE02_02385 PF13419 Haloacid dehalogenase-like hydrolase DLE02_02386 PF01479 S4 domain DLE02_02387 PF00154 recA bacterial DNA recombination protein DLE02_02388 PF02631 RecX family DLE02_02390 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DLE02_02390 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_02391 PF07977 FabA-like domain DLE02_02392 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_02392 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DLE02_02394 PF01103 Surface antigen DLE02_02394 PF07244 Surface antigen variable number repeat DLE02_02395 PF17820 PDZ domain DLE02_02395 PF13180 PDZ domain DLE02_02395 PF02163 Peptidase family M50 DLE02_02396 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DLE02_02396 PF13288 DXP reductoisomerase C-terminal domain DLE02_02396 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DLE02_02398 PF01255 Putative undecaprenyl diphosphate synthase DLE02_02399 PF01765 Ribosome recycling factor DLE02_02400 PF00696 Amino acid kinase family DLE02_02401 PF04055 Radical SAM superfamily DLE02_02401 PF18693 TRAM domain DLE02_02401 PF00919 Uncharacterized protein family UPF0004 DLE02_02402 PF00989 PAS fold DLE02_02402 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_02402 PF00512 His Kinase A (phospho-acceptor) domain DLE02_02403 PF02954 Bacterial regulatory protein, Fis family DLE02_02403 PF00072 Response regulator receiver domain DLE02_02403 PF00158 Sigma-54 interaction domain DLE02_02404 PF00440 Bacterial regulatory proteins, tetR family DLE02_02405 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DLE02_02405 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DLE02_02407 PF02542 YgbB family DLE02_02409 PF01266 FAD dependent oxidoreductase DLE02_02413 PF10415 Fumarase C C-terminus DLE02_02413 PF00206 Lyase DLE02_02414 PF16363 GDP-mannose 4,6 dehydratase DLE02_02415 PF02635 DsrE/DsrF-like family DLE02_02419 PF00892 EamA-like transporter family DLE02_02420 PF00392 Bacterial regulatory proteins, gntR family DLE02_02420 PF00155 Aminotransferase class I and II DLE02_02421 PF01638 HxlR-like helix-turn-helix DLE02_02422 PF00994 Probable molybdopterin binding domain DLE02_02422 PF03453 MoeA N-terminal region (domain I and II) DLE02_02422 PF03454 MoeA C-terminal region (domain IV) DLE02_02423 PF01967 MoaC family DLE02_02423 PF00994 Probable molybdopterin binding domain DLE02_02424 PF02391 MoaE protein DLE02_02426 PF06463 Molybdenum Cofactor Synthesis C DLE02_02426 PF04055 Radical SAM superfamily DLE02_02427 PF00384 Molybdopterin oxidoreductase DLE02_02427 PF01568 Molydopterin dinucleotide binding domain DLE02_02427 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DLE02_02428 PF12804 MobA-like NTP transferase domain DLE02_02429 PF00384 Molybdopterin oxidoreductase DLE02_02429 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DLE02_02429 PF04324 BFD-like [2Fe-2S] binding domain DLE02_02429 PF01568 Molydopterin dinucleotide binding domain DLE02_02430 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DLE02_02430 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DLE02_02430 PF04324 BFD-like [2Fe-2S] binding domain DLE02_02430 PF18267 Rubredoxin NAD+ reductase C-terminal domain DLE02_02430 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02431 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DLE02_02431 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DLE02_02431 PF04324 BFD-like [2Fe-2S] binding domain DLE02_02431 PF18267 Rubredoxin NAD+ reductase C-terminal domain DLE02_02431 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02431 PF13806 Rieske-like [2Fe-2S] domain DLE02_02433 PF00072 Response regulator receiver domain DLE02_02433 PF00486 Transcriptional regulatory protein, C terminal DLE02_02434 PF00005 ABC transporter DLE02_02435 PF13438 Domain of unknown function (DUF4113) DLE02_02435 PF00817 impB/mucB/samB family DLE02_02435 PF11799 impB/mucB/samB family C-terminal domain DLE02_02436 PF01220 Dehydroquinase class II DLE02_02437 PF00364 Biotin-requiring enzyme DLE02_02438 PF02785 Biotin carboxylase C-terminal domain DLE02_02438 PF00289 Biotin carboxylase, N-terminal domain DLE02_02438 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DLE02_02440 PF12832 MFS_1 like family DLE02_02461 PF00712 DNA polymerase III beta subunit, N-terminal domain DLE02_02461 PF02768 DNA polymerase III beta subunit, C-terminal domain DLE02_02461 PF02767 DNA polymerase III beta subunit, central domain DLE02_02469 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DLE02_02507 PF00665 Integrase core domain DLE02_02507 PF13936 Helix-turn-helix domain DLE02_02510 PF01695 IstB-like ATP binding protein DLE02_02512 PF00145 C-5 cytosine-specific DNA methylase DLE02_02527 PF00929 Exonuclease DLE02_02540 PF01645 Conserved region in glutamate synthase DLE02_02543 PF01565 FAD binding domain DLE02_02543 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DLE02_02544 PF01451 Low molecular weight phosphotyrosine protein phosphatase DLE02_02546 PF00465 Iron-containing alcohol dehydrogenase DLE02_02547 PF03061 Thioesterase superfamily DLE02_02548 PF05506 Domain of unknown function (DUF756) DLE02_02548 PF04185 Phosphoesterase family DLE02_02550 PF12170 DNA polymerase III tau subunit V interacting with alpha DLE02_02550 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DLE02_02550 PF12169 DNA polymerase III subunits gamma and tau domain III DLE02_02551 PF07690 Major Facilitator Superfamily DLE02_02553 PF00144 Beta-lactamase DLE02_02554 PF01575 MaoC like domain DLE02_02556 PF02803 Thiolase, C-terminal domain DLE02_02556 PF00108 Thiolase, N-terminal domain DLE02_02558 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02558 PF03466 LysR substrate binding domain DLE02_02559 PF00923 Transaldolase/Fructose-6-phosphate aldolase DLE02_02560 PF01810 LysE type translocator DLE02_02561 PF01037 Lrp/AsnC ligand binding domain DLE02_02562 PF03594 Benzoate membrane transport protein DLE02_02563 PF02308 MgtC family DLE02_02564 PF00690 Cation transporter/ATPase, N-terminus DLE02_02564 PF00689 Cation transporting ATPase, C-terminus DLE02_02569 PF00582 Universal stress protein family DLE02_02570 PF00005 ABC transporter DLE02_02570 PF12848 ABC transporter DLE02_02573 PF05052 MerE protein DLE02_02574 PF13610 DDE domain DLE02_02575 PF13610 DDE domain DLE02_02577 PF13610 DDE domain DLE02_02578 PF02411 MerT mercuric transport protein DLE02_02579 PF04072 Leucine carboxyl methyltransferase DLE02_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02580 PF03466 LysR substrate binding domain DLE02_02581 PF07690 Major Facilitator Superfamily DLE02_02582 PF05681 Fumarate hydratase (Fumerase) DLE02_02583 PF05683 Fumarase C-terminus DLE02_02584 PF12833 Helix-turn-helix domain DLE02_02584 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DLE02_02585 PF00743 Flavin-binding monooxygenase-like DLE02_02586 PF00106 short chain dehydrogenase DLE02_02587 PF07859 alpha/beta hydrolase fold DLE02_02588 PF05199 GMC oxidoreductase DLE02_02589 PF03573 outer membrane porin, OprD family DLE02_02590 PF07690 Major Facilitator Superfamily DLE02_02591 PF00884 Sulfatase DLE02_02592 PF03781 Sulfatase-modifying factor enzyme 1 DLE02_02594 PF00355 Rieske [2Fe-2S] domain DLE02_02595 PF00175 Oxidoreductase NAD-binding domain DLE02_02595 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_02598 PF07690 Major Facilitator Superfamily DLE02_02599 PF00378 Enoyl-CoA hydratase/isomerase DLE02_02600 PF00171 Aldehyde dehydrogenase family DLE02_02602 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_02602 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_02602 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_02603 PF03573 outer membrane porin, OprD family DLE02_02606 PF07519 Tannase and feruloyl esterase DLE02_02607 PF07729 FCD domain DLE02_02607 PF00392 Bacterial regulatory proteins, gntR family DLE02_02608 PF00171 Aldehyde dehydrogenase family DLE02_02609 PF00701 Dihydrodipicolinate synthetase family DLE02_02610 PF13378 Enolase C-terminal domain-like DLE02_02611 PF07690 Major Facilitator Superfamily DLE02_02612 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DLE02_02612 PF08666 SAF domain DLE02_02613 PF00892 EamA-like transporter family DLE02_02614 PF12833 Helix-turn-helix domain DLE02_02614 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DLE02_02615 PF00171 Aldehyde dehydrogenase family DLE02_02616 PF00324 Amino acid permease DLE02_02617 PF04958 Arginine N-succinyltransferase beta subunit DLE02_02618 PF00202 Aminotransferase class-III DLE02_02620 PF00171 Aldehyde dehydrogenase family DLE02_02622 PF07729 FCD domain DLE02_02622 PF00392 Bacterial regulatory proteins, gntR family DLE02_02624 PF00324 Amino acid permease DLE02_02625 PF01266 FAD dependent oxidoreductase DLE02_02626 PF00324 Amino acid permease DLE02_02634 PF03527 RHS protein DLE02_02634 PF05593 RHS Repeat DLE02_02635 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DLE02_02635 PF04717 Type VI secretion system, phage-baseplate injector DLE02_02635 PF13296 Putative type VI secretion system Rhs element Vgr DLE02_02638 PF03180 NLPA lipoprotein DLE02_02639 PF05987 Bacterial protein of unknown function (DUF898) DLE02_02642 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02642 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DLE02_02643 PF00764 Arginosuccinate synthase DLE02_02644 PF00360 Phytochrome region DLE02_02644 PF01590 GAF domain DLE02_02644 PF00563 EAL domain DLE02_02644 PF00990 Diguanylate cyclase, GGDEF domain DLE02_02645 PF01979 Amidohydrolase family DLE02_02646 PF00929 Exonuclease DLE02_02648 PF07715 TonB-dependent Receptor Plug Domain DLE02_02648 PF00593 TonB dependent receptor DLE02_02649 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DLE02_02649 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DLE02_02650 PF00005 ABC transporter DLE02_02651 PF12911 N-terminal TM domain of oligopeptide transport permease C DLE02_02651 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_02652 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_02653 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DLE02_02654 PF01476 LysM domain DLE02_02654 PF01464 Transglycosylase SLT domain DLE02_02654 PF01476 LysM domain DLE02_02654 PF01464 Transglycosylase SLT domain DLE02_02655 PF00929 Exonuclease DLE02_02657 PF09297 NADH pyrophosphatase zinc ribbon domain DLE02_02657 PF00293 NUDIX domain DLE02_02659 PF04972 BON domain DLE02_02660 PF02021 Uncharacterised protein family UPF0102 DLE02_02661 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DLE02_02663 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02663 PF03466 LysR substrate binding domain DLE02_02664 PF01810 LysE type translocator DLE02_02666 PF13411 MerR HTH family regulatory protein DLE02_02668 PF01494 FAD binding domain DLE02_02669 PF01494 FAD binding domain DLE02_02670 PF05195 Aminopeptidase P, N-terminal domain DLE02_02670 PF00557 Metallopeptidase family M24 DLE02_02677 PF08019 Phosphoethanolamine transferase EptA/EptB DLE02_02677 PF00884 Sulfatase DLE02_02686 PF01476 LysM domain DLE02_02686 PF08525 Opacity-associated protein A N-terminal motif DLE02_02686 PF01551 Peptidase family M23 DLE02_02691 PF03869 Arc-like DNA binding domain DLE02_02735 PF03796 DnaB-like helicase C terminal domain DLE02_02735 PF00772 DnaB-like helicase N terminal domain DLE02_02747 PF12684 PDDEXK-like domain of unknown function (DUF3799) DLE02_02747 PF06630 Enterobacterial exodeoxyribonuclease VIII DLE02_02755 PF00117 Glutamine amidotransferase class-I DLE02_02756 PF11838 ERAP1-like C-terminal domain DLE02_02756 PF01433 Peptidase family M1 domain DLE02_02757 PF07715 TonB-dependent Receptor Plug Domain DLE02_02757 PF00593 TonB dependent receptor DLE02_02758 PF02885 Glycosyl transferase family, helical bundle domain DLE02_02758 PF00591 Glycosyl transferase family, a/b domain DLE02_02759 PF00218 Indole-3-glycerol phosphate synthase DLE02_02762 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DLE02_02762 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DLE02_02763 PF01799 [2Fe-2S] binding domain DLE02_02763 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_02764 PF01227 GTP cyclohydrolase I DLE02_02765 PF00665 Integrase core domain DLE02_02765 PF13936 Helix-turn-helix domain DLE02_02766 PF00144 Beta-lactamase DLE02_02769 PF05675 Protein of unknown function (DUF817) DLE02_02770 PF01208 Uroporphyrinogen decarboxylase (URO-D) DLE02_02772 PF00425 chorismate binding enzyme DLE02_02774 PF00975 Thioesterase domain DLE02_02775 PF00005 ABC transporter DLE02_02776 PF00005 ABC transporter DLE02_02778 PF00282 Pyridoxal-dependent decarboxylase conserved domain DLE02_02779 PF00857 Isochorismatase family DLE02_02779 PF00550 Phosphopantetheine attachment site DLE02_02780 PF13193 AMP-binding enzyme C-terminal domain DLE02_02780 PF00501 AMP-binding enzyme DLE02_02781 PF00501 AMP-binding enzyme DLE02_02781 PF13193 AMP-binding enzyme C-terminal domain DLE02_02782 PF00501 AMP-binding enzyme DLE02_02782 PF00668 Condensation domain DLE02_02782 PF00550 Phosphopantetheine attachment site DLE02_02783 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DLE02_02784 PF00593 TonB dependent receptor DLE02_02784 PF07715 TonB-dependent Receptor Plug Domain DLE02_02785 PF01497 Periplasmic binding protein DLE02_02786 PF00005 ABC transporter DLE02_02787 PF01032 FecCD transport family DLE02_02788 PF01032 FecCD transport family DLE02_02790 PF00975 Thioesterase domain DLE02_02790 PF00550 Phosphopantetheine attachment site DLE02_02790 PF00668 Condensation domain DLE02_02790 PF13193 AMP-binding enzyme C-terminal domain DLE02_02790 PF00501 AMP-binding enzyme DLE02_02791 PF00550 Phosphopantetheine attachment site DLE02_02791 PF00501 AMP-binding enzyme DLE02_02791 PF00668 Condensation domain DLE02_02791 PF13193 AMP-binding enzyme C-terminal domain DLE02_02793 PF13309 HTH domain DLE02_02793 PF08348 YheO-like PAS domain DLE02_02794 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_02795 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_02796 PF17954 Quercetinase C-terminal cupin domain DLE02_02796 PF02678 Pirin DLE02_02799 PF00440 Bacterial regulatory proteins, tetR family DLE02_02800 PF08659 KR domain DLE02_02800 PF02801 Beta-ketoacyl synthase, C-terminal domain DLE02_02800 PF00109 Beta-ketoacyl synthase, N-terminal domain DLE02_02800 PF09277 Erythronolide synthase, docking DLE02_02800 PF08990 Erythronolide synthase docking DLE02_02800 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_02800 PF16197 Ketoacyl-synthetase C-terminal extension DLE02_02800 PF00550 Phosphopantetheine attachment site DLE02_02800 PF00698 Acyl transferase domain DLE02_02800 PF14765 Polyketide synthase dehydratase DLE02_02801 PF13378 Enolase C-terminal domain-like DLE02_02801 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DLE02_02802 PF00083 Sugar (and other) transporter DLE02_02803 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DLE02_02805 PF00892 EamA-like transporter family DLE02_02809 PF01266 FAD dependent oxidoreductase DLE02_02809 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DLE02_02810 PF18113 Rubredoxin binding C-terminal domain DLE02_02810 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02811 PF00171 Aldehyde dehydrogenase family DLE02_02812 PF00355 Rieske [2Fe-2S] domain DLE02_02812 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DLE02_02813 PF02028 BCCT, betaine/carnitine/choline family transporter DLE02_02814 PF02028 BCCT, betaine/carnitine/choline family transporter DLE02_02815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02815 PF03466 LysR substrate binding domain DLE02_02816 PF00324 Amino acid permease DLE02_02817 PF00171 Aldehyde dehydrogenase family DLE02_02820 PF06018 CodY GAF-like domain DLE02_02820 PF13556 PucR C-terminal helix-turn-helix domain DLE02_02820 PF17853 GGDEF-like domain DLE02_02827 PF04328 Selenoprotein, putative DLE02_02828 PF02554 Carbon starvation protein CstA DLE02_02828 PF13722 5TM C-terminal transporter carbon starvation CstA DLE02_02829 PF09285 Elongation factor P, C-terminal DLE02_02829 PF01132 Elongation factor P (EF-P) OB domain DLE02_02829 PF08207 Elongation factor P (EF-P) KOW-like domain DLE02_02830 PF04055 Radical SAM superfamily DLE02_02833 PF01197 Ribosomal protein L31 DLE02_02834 PF13593 SBF-like CPA transporter family (DUF4137) DLE02_02835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DLE02_02836 PF07690 Major Facilitator Superfamily DLE02_02837 PF05362 Lon protease (S16) C-terminal proteolytic domain DLE02_02837 PF13654 AAA domain DLE02_02838 PF03466 LysR substrate binding domain DLE02_02838 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02839 PF01476 LysM domain DLE02_02839 PF01551 Peptidase family M23 DLE02_02840 PF01975 Survival protein SurE DLE02_02843 PF00768 D-alanyl-D-alanine carboxypeptidase DLE02_02843 PF07943 Penicillin-binding protein 5, C-terminal domain DLE02_02844 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_02845 PF13344 Haloacid dehalogenase-like hydrolase DLE02_02845 PF00293 NUDIX domain DLE02_02847 PF04356 Protein of unknown function (DUF489) DLE02_02848 PF00206 Lyase DLE02_02848 PF08328 Adenylosuccinate lyase C-terminal DLE02_02851 PF08496 Peptidase family S49 N-terminal DLE02_02851 PF01343 Peptidase family S49 DLE02_02852 PF00005 ABC transporter DLE02_02853 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_02854 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_02855 PF12849 PBP superfamily domain DLE02_02856 PF00324 Amino acid permease DLE02_02857 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DLE02_02857 PF00205 Thiamine pyrophosphate enzyme, central domain DLE02_02857 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DLE02_02858 PF01037 Lrp/AsnC ligand binding domain DLE02_02859 PF00171 Aldehyde dehydrogenase family DLE02_02860 PF00282 Pyridoxal-dependent decarboxylase conserved domain DLE02_02861 PF00202 Aminotransferase class-III DLE02_02863 PF17754 MftR C-terminal domain DLE02_02863 PF00440 Bacterial regulatory proteins, tetR family DLE02_02865 PF00487 Fatty acid desaturase DLE02_02866 PF00175 Oxidoreductase NAD-binding domain DLE02_02866 PF00970 Oxidoreductase FAD-binding domain DLE02_02866 PF00111 2Fe-2S iron-sulfur cluster binding domain DLE02_02867 PF00440 Bacterial regulatory proteins, tetR family DLE02_02869 PF00271 Helicase conserved C-terminal domain DLE02_02869 PF12137 RNA polymerase recycling family C-terminal DLE02_02869 PF00176 SNF2 family N-terminal domain DLE02_02869 PF18339 RapA N-terminal Tudor like domain 1 DLE02_02869 PF18337 RapA N-terminal Tudor like domain DLE02_02870 PF00849 RNA pseudouridylate synthase DLE02_02872 PF00202 Aminotransferase class-III DLE02_02873 PF02581 Thiamine monophosphate synthase DLE02_02878 PF00675 Insulinase (Peptidase family M16) DLE02_02878 PF05193 Peptidase M16 inactive domain DLE02_02879 PF02567 Phenazine biosynthesis-like protein DLE02_02880 PF00375 Sodium:dicarboxylate symporter family DLE02_02881 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_02881 PF03466 LysR substrate binding domain DLE02_02882 PF06779 Uncharacterised MFS-type transporter YbfB DLE02_02885 PF00180 Isocitrate/isopropylmalate dehydrogenase DLE02_02886 PF00849 RNA pseudouridylate synthase DLE02_02887 PF03971 Monomeric isocitrate dehydrogenase DLE02_02889 PF07943 Penicillin-binding protein 5, C-terminal domain DLE02_02889 PF00768 D-alanyl-D-alanine carboxypeptidase DLE02_02890 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_02891 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DLE02_02892 PF00875 DNA photolyase DLE02_02892 PF03441 FAD binding domain of DNA photolyase DLE02_02898 PF02350 UDP-N-acetylglucosamine 2-epimerase DLE02_02901 PF03060 Nitronate monooxygenase DLE02_02902 PF01207 Dihydrouridine synthase (Dus) DLE02_02903 PF00589 Phage integrase family DLE02_02972 PF07759 Protein of unknown function (DUF1615) DLE02_02974 PF00696 Amino acid kinase family DLE02_02974 PF01472 PUA domain DLE02_02975 PF01018 GTP1/OBG DLE02_02975 PF01926 50S ribosome-binding GTPase DLE02_02978 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DLE02_02978 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DLE02_02979 PF00892 EamA-like transporter family DLE02_02981 PF17757 UvrB interaction domain DLE02_02981 PF12344 Ultra-violet resistance protein B DLE02_02981 PF00271 Helicase conserved C-terminal domain DLE02_02981 PF02151 UvrB/uvrC motif DLE02_02981 PF04851 Type III restriction enzyme, res subunit DLE02_02983 PF00990 Diguanylate cyclase, GGDEF domain DLE02_02983 PF17151 Periplasmic sensor domain DLE02_02985 PF00155 Aminotransferase class I and II DLE02_02990 PF00106 short chain dehydrogenase DLE02_02991 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DLE02_02992 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DLE02_02993 PF02565 Recombination protein O C terminal DLE02_02993 PF11967 Recombination protein O N terminal DLE02_02995 PF07650 KH domain DLE02_02995 PF01926 50S ribosome-binding GTPase DLE02_02996 PF00035 Double-stranded RNA binding motif DLE02_02996 PF14622 Ribonuclease-III-like DLE02_02998 PF10502 Signal peptidase, peptidase S26 DLE02_02999 PF00679 Elongation factor G C-terminus DLE02_02999 PF00009 Elongation factor Tu GTP binding domain DLE02_02999 PF03144 Elongation factor Tu domain 2 DLE02_02999 PF06421 GTP-binding protein LepA C-terminus DLE02_03001 PF13180 PDZ domain DLE02_03002 PF00890 FAD binding domain DLE02_03002 PF02910 Fumarate reductase flavoprotein C-term DLE02_03004 PF02223 Thymidylate kinase DLE02_03005 PF02618 YceG-like family DLE02_03006 PF01063 Amino-transferase class IV DLE02_03009 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_03010 PF00528 Binding-protein-dependent transport system inner membrane component DLE02_03011 PF12857 TOBE-like domain DLE02_03011 PF00005 ABC transporter DLE02_03012 PF03466 LysR substrate binding domain DLE02_03012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_03014 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DLE02_03014 PF14602 Hexapeptide repeat of succinyl-transferase DLE02_03014 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_03016 PF06508 Queuosine biosynthesis protein QueC DLE02_03019 PF00578 AhpC/TSA family DLE02_03021 PF01467 Cytidylyltransferase-like DLE02_03021 PF00293 NUDIX domain DLE02_03022 PF00378 Enoyl-CoA hydratase/isomerase DLE02_03023 PF01784 NIF3 (NGG1p interacting factor 3) DLE02_03025 PF07690 Major Facilitator Superfamily DLE02_03026 PF02769 AIR synthase related protein, C-terminal domain DLE02_03026 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DLE02_03026 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DLE02_03027 PF01966 HD domain DLE02_03028 PF07499 RuvA, C-terminal domain DLE02_03028 PF01330 RuvA N terminal domain DLE02_03029 PF17864 RuvB AAA lid domain DLE02_03029 PF05491 RuvB C-terminal winged helix domain DLE02_03029 PF05496 Holliday junction DNA helicase RuvB P-loop domain DLE02_03030 PF01546 Peptidase family M20/M25/M40 DLE02_03030 PF07687 Peptidase dimerisation domain DLE02_03031 PF03061 Thioesterase superfamily DLE02_03032 PF01618 MotA/TolQ/ExbB proton channel family DLE02_03033 PF02472 Biopolymer transport protein ExbD/TolR DLE02_03035 PF04052 TolB amino-terminal domain DLE02_03035 PF07676 WD40-like Beta Propeller Repeat DLE02_03036 PF00691 OmpA family DLE02_03038 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DLE02_03039 PF08032 RNA 2'-O ribose methyltransferase substrate binding DLE02_03039 PF00588 SpoU rRNA Methylase family DLE02_03045 PF08299 Bacterial dnaA protein helix-turn-helix DLE02_03045 PF11638 DnaA N-terminal domain DLE02_03045 PF00308 Bacterial dnaA protein DLE02_03046 PF01594 AI-2E family transporter DLE02_03047 PF00586 AIR synthase related protein, N-terminal domain DLE02_03047 PF02769 AIR synthase related protein, C-terminal domain DLE02_03048 PF00551 Formyl transferase DLE02_03049 PF12697 Alpha/beta hydrolase family DLE02_03050 PF06965 Na+/H+ antiporter 1 DLE02_03050 PF01343 Peptidase family S49 DLE02_03052 PF03772 Competence protein DLE02_03052 PF13567 Domain of unknown function (DUF4131) DLE02_03052 PF00753 Metallo-beta-lactamase superfamily DLE02_03053 PF00005 ABC transporter DLE02_03054 PF02687 FtsX-like permease family DLE02_03054 PF12704 MacB-like periplasmic core domain DLE02_03056 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DLE02_03059 PF00266 Aminotransferase class-V DLE02_03061 PF13533 Biotin-lipoyl like DLE02_03065 PF00535 Glycosyl transferase family 2 DLE02_03068 PF03989 DNA gyrase C-terminal domain, beta-propeller DLE02_03068 PF00521 DNA gyrase/topoisomerase IV, subunit A DLE02_03069 PF01012 Electron transfer flavoprotein domain DLE02_03069 PF00766 Electron transfer flavoprotein FAD-binding domain DLE02_03070 PF01012 Electron transfer flavoprotein domain DLE02_03071 PF00589 Phage integrase family DLE02_03071 PF02899 Phage integrase, N-terminal SAM-like domain DLE02_03072 PF01810 LysE type translocator DLE02_03073 PF01678 Diaminopimelate epimerase DLE02_03074 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DLE02_03074 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DLE02_03076 PF00324 Amino acid permease DLE02_03077 PF18073 Rubredoxin metal binding domain DLE02_03079 PF00152 tRNA synthetases class II (D, K and N) DLE02_03080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DLE02_03080 PF11890 Domain of unknown function (DUF3410) DLE02_03080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DLE02_03081 PF06803 Protein of unknown function (DUF1232) DLE02_03082 PF02634 FdhD/NarQ family DLE02_03083 PF00384 Molybdopterin oxidoreductase DLE02_03084 PF02595 Glycerate kinase family DLE02_03087 PF00881 Nitroreductase family DLE02_03092 PF00975 Thioesterase domain DLE02_03092 PF00668 Condensation domain DLE02_03092 PF13193 AMP-binding enzyme C-terminal domain DLE02_03092 PF00501 AMP-binding enzyme DLE02_03092 PF00550 Phosphopantetheine attachment site DLE02_03095 PF01272 Transcription elongation factor, GreA/GreB, C-term DLE02_03095 PF03449 Transcription elongation factor, N-terminal DLE02_03096 PF00497 Bacterial extracellular solute-binding proteins, family 3 DLE02_03096 PF01464 Transglycosylase SLT domain DLE02_03098 PF01171 PP-loop family DLE02_03099 PF01464 Transglycosylase SLT domain DLE02_03100 PF01435 Peptidase family M48 DLE02_03102 PF00873 AcrB/AcrD/AcrF family DLE02_03103 PF03009 Glycerophosphoryl diester phosphodiesterase family DLE02_03104 PF00753 Metallo-beta-lactamase superfamily DLE02_03105 PF01219 Prokaryotic diacylglycerol kinase DLE02_03106 PF00118 TCP-1/cpn60 chaperonin family DLE02_03107 PF00166 Chaperonin 10 Kd subunit DLE02_03109 PF00149 Calcineurin-like phosphoesterase DLE02_03110 PF00781 Diacylglycerol kinase catalytic domain DLE02_03111 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DLE02_03111 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DLE02_03112 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DLE02_03112 PF01266 FAD dependent oxidoreductase DLE02_03113 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DLE02_03113 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DLE02_03114 PF00083 Sugar (and other) transporter DLE02_03117 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DLE02_03117 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DLE02_03120 PF09423 PhoD-like phosphatase DLE02_03120 PF16655 PhoD-like phosphatase, N-terminal domain DLE02_03124 PF00809 Pterin binding enzyme DLE02_03125 PF00004 ATPase family associated with various cellular activities (AAA) DLE02_03125 PF17862 AAA+ lid domain DLE02_03125 PF06480 FtsH Extracellular DLE02_03125 PF01434 Peptidase family M41 DLE02_03126 PF01728 FtsJ-like methyltransferase DLE02_03127 PF01985 CRS1 / YhbY (CRM) domain DLE02_03130 PF00117 Glutamine amidotransferase class-I DLE02_03130 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DLE02_03131 PF02142 MGS-like domain DLE02_03131 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DLE02_03131 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DLE02_03132 PF03449 Transcription elongation factor, N-terminal DLE02_03132 PF01272 Transcription elongation factor, GreA/GreB, C-term DLE02_03133 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_03134 PF00582 Universal stress protein family DLE02_03135 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DLE02_03137 PF09587 Bacterial capsule synthesis protein PGA_cap DLE02_03141 PF00999 Sodium/hydrogen exchanger family DLE02_03142 PF04228 Putative neutral zinc metallopeptidase DLE02_03143 PF05661 Protein of unknown function (DUF808) DLE02_03144 PF00579 tRNA synthetases class I (W and Y) DLE02_03145 PF02629 CoA binding domain DLE02_03145 PF00549 CoA-ligase DLE02_03146 PF08442 ATP-grasp domain DLE02_03146 PF00549 CoA-ligase DLE02_03147 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_03147 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DLE02_03148 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DLE02_03148 PF02817 e3 binding domain DLE02_03148 PF00364 Biotin-requiring enzyme DLE02_03149 PF16078 2-oxoglutarate dehydrogenase N-terminus DLE02_03149 PF00676 Dehydrogenase E1 component DLE02_03149 PF16870 2-oxoglutarate dehydrogenase C-terminal DLE02_03149 PF02779 Transketolase, pyrimidine binding domain DLE02_03150 PF13085 2Fe-2S iron-sulfur cluster binding domain DLE02_03151 PF00890 FAD binding domain DLE02_03151 PF02910 Fumarate reductase flavoprotein C-term DLE02_03152 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DLE02_03153 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DLE02_03154 PF00285 Citrate synthase, C-terminal domain DLE02_03156 PF17773 UPF0176 acylphosphatase like domain DLE02_03156 PF00581 Rhodanese-like domain DLE02_03160 PF04546 Sigma-70, non-essential region DLE02_03160 PF03979 Sigma-70 factor, region 1.1 DLE02_03160 PF00140 Sigma-70 factor, region 1.2 DLE02_03160 PF04542 Sigma-70 region 2 DLE02_03160 PF04539 Sigma-70 region 3 DLE02_03160 PF04545 Sigma-70, region 4 DLE02_03161 PF04359 Protein of unknown function (DUF493) DLE02_03162 PF03099 Biotin/lipoate A/B protein ligase family DLE02_03164 PF00465 Iron-containing alcohol dehydrogenase DLE02_03165 PF13520 Amino acid permease DLE02_03166 PF03358 NADPH-dependent FMN reductase DLE02_03167 PF01638 HxlR-like helix-turn-helix DLE02_03168 PF00588 SpoU rRNA Methylase family DLE02_03169 PF14824 Sirohaem biosynthesis protein central DLE02_03169 PF10414 Sirohaem synthase dimerisation region DLE02_03169 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DLE02_03170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DLE02_03170 PF02403 Seryl-tRNA synthetase N-terminal domain DLE02_03172 PF03548 Outer membrane lipoprotein carrier protein LolA DLE02_03173 PF01016 Ribosomal L27 protein DLE02_03174 PF00829 Ribosomal prokaryotic L21 protein DLE02_03175 PF00348 Polyprenyl synthetase DLE02_03177 PF01569 PAP2 superfamily DLE02_03178 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DLE02_03178 PF00529 HlyD membrane-fusion protein of T1SS DLE02_03179 PF00873 AcrB/AcrD/AcrF family DLE02_03180 PF02321 Outer membrane efflux protein DLE02_03181 PF01906 Putative heavy-metal-binding DLE02_03182 PF01906 Putative heavy-metal-binding DLE02_03186 PF08264 Anticodon-binding domain of tRNA DLE02_03186 PF00133 tRNA synthetases class I (I, L, M and V) DLE02_03186 PF10458 Valyl tRNA synthetase tRNA binding arm DLE02_03190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_03190 PF03466 LysR substrate binding domain DLE02_03191 PF00909 Ammonium Transporter Family DLE02_03193 PF00512 His Kinase A (phospho-acceptor) domain DLE02_03193 PF08521 Two-component sensor kinase N-terminal DLE02_03193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_03194 PF00486 Transcriptional regulatory protein, C terminal DLE02_03194 PF00072 Response regulator receiver domain DLE02_03195 PF08019 Phosphoethanolamine transferase EptA/EptB DLE02_03195 PF00884 Sulfatase DLE02_03199 PF01734 Patatin-like phospholipase DLE02_03201 PF01145 SPFH domain / Band 7 family DLE02_03202 PF04237 YjbR DLE02_03203 PF00348 Polyprenyl synthetase DLE02_03204 PF04303 PrpF protein DLE02_03205 PF00324 Amino acid permease DLE02_03207 PF01965 DJ-1/PfpI family DLE02_03208 PF00550 Phosphopantetheine attachment site DLE02_03208 PF09277 Erythronolide synthase, docking DLE02_03208 PF02801 Beta-ketoacyl synthase, C-terminal domain DLE02_03208 PF08659 KR domain DLE02_03208 PF14765 Polyketide synthase dehydratase DLE02_03208 PF00698 Acyl transferase domain DLE02_03208 PF00109 Beta-ketoacyl synthase, N-terminal domain DLE02_03208 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_03208 PF16197 Ketoacyl-synthetase C-terminal extension DLE02_03208 PF08990 Erythronolide synthase docking DLE02_03209 PF06719 AraC-type transcriptional regulator N-terminus DLE02_03209 PF12833 Helix-turn-helix domain DLE02_03210 PF02673 Bacitracin resistance protein BacA DLE02_03214 PF02525 Flavodoxin-like fold DLE02_03217 PF01507 Phosphoadenosine phosphosulfate reductase family DLE02_03218 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DLE02_03218 PF06974 Protein of unknown function (DUF1298) DLE02_03220 PF00575 S1 RNA binding domain DLE02_03220 PF10150 Ribonuclease E/G family DLE02_03221 PF02545 Maf-like protein DLE02_03222 PF04093 rod shape-determining protein MreD DLE02_03223 PF04085 rod shape-determining protein MreC DLE02_03225 PF02686 Glu-tRNAGln amidotransferase C subunit DLE02_03226 PF01425 Amidase DLE02_03227 PF02934 GatB/GatE catalytic domain DLE02_03227 PF02637 GatB domain DLE02_03233 PF05992 SbmA/BacA-like family DLE02_03234 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_03234 PF13291 ACT domain DLE02_03235 PF01734 Patatin-like phospholipase DLE02_03236 PF01235 Sodium:alanine symporter family DLE02_03238 PF00881 Nitroreductase family DLE02_03239 PF07690 Major Facilitator Superfamily DLE02_03240 PF12805 FUSC-like inner membrane protein yccS DLE02_03242 PF00258 Flavodoxin DLE02_03242 PF00667 FAD binding domain DLE02_03242 PF00175 Oxidoreductase NAD-binding domain DLE02_03250 PF17969 L,D-transpeptidase C-terminal domain DLE02_03250 PF03734 L,D-transpeptidase catalytic domain DLE02_03251 PF04304 Protein of unknown function (DUF454) DLE02_03253 PF08085 Entericidin EcnA/B family DLE02_03254 PF07687 Peptidase dimerisation domain DLE02_03254 PF01546 Peptidase family M20/M25/M40 DLE02_03256 PF00072 Response regulator receiver domain DLE02_03256 PF01584 CheW-like domain DLE02_03256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_03256 PF01627 Hpt domain DLE02_03257 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DLE02_03257 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DLE02_03258 PF01584 CheW-like domain DLE02_03259 PF00072 Response regulator receiver domain DLE02_03260 PF00072 Response regulator receiver domain DLE02_03263 PF00873 AcrB/AcrD/AcrF family DLE02_03264 PF03129 Anticodon binding domain DLE02_03264 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DLE02_03264 PF04073 Aminoacyl-tRNA editing domain DLE02_03265 PF07411 Domain of unknown function (DUF1508) DLE02_03266 PF08274 PhnA Zinc-Ribbon DLE02_03266 PF03831 PhnA domain DLE02_03267 PF04343 Protein of unknown function, DUF488 DLE02_03269 PF01571 Aminomethyltransferase folate-binding domain DLE02_03270 PF10411 Disulfide bond isomerase protein N-terminus DLE02_03270 PF13098 Thioredoxin-like domain DLE02_03272 PF03547 Membrane transport protein DLE02_03273 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DLE02_03274 PF00593 TonB dependent receptor DLE02_03274 PF07715 TonB-dependent Receptor Plug Domain DLE02_03275 PF02245 Methylpurine-DNA glycosylase (MPG) DLE02_03276 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DLE02_03276 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DLE02_03276 PF06827 Zinc finger found in FPG and IleRS DLE02_03279 PF01741 Large-conductance mechanosensitive channel, MscL DLE02_03280 PF03144 Elongation factor Tu domain 2 DLE02_03280 PF00009 Elongation factor Tu GTP binding domain DLE02_03280 PF00679 Elongation factor G C-terminus DLE02_03281 PF00860 Permease family DLE02_03282 PF05175 Methyltransferase small domain DLE02_03282 PF08468 Methyltransferase small domain N-terminal DLE02_03283 PF00324 Amino acid permease DLE02_03284 PF01139 tRNA-splicing ligase RtcB DLE02_03286 PF13505 Outer membrane protein beta-barrel domain DLE02_03286 PF00691 OmpA family DLE02_03288 PF02803 Thiolase, C-terminal domain DLE02_03288 PF00108 Thiolase, N-terminal domain DLE02_03290 PF00893 Small Multidrug Resistance protein DLE02_03292 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DLE02_03292 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DLE02_03293 PF01011 PQQ enzyme repeat DLE02_03294 PF04966 Carbohydrate-selective porin, OprB family DLE02_03295 PF02515 CoA-transferase family III DLE02_03296 PF12833 Helix-turn-helix domain DLE02_03296 PF02311 AraC-like ligand binding domain DLE02_03297 PF00108 Thiolase, N-terminal domain DLE02_03297 PF02803 Thiolase, C-terminal domain DLE02_03298 PF00378 Enoyl-CoA hydratase/isomerase DLE02_03298 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DLE02_03298 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DLE02_03303 PF03006 Haemolysin-III related DLE02_03304 PF07690 Major Facilitator Superfamily DLE02_03304 PF00083 Sugar (and other) transporter DLE02_03306 PF07516 SecA Wing and Scaffold domain DLE02_03306 PF02810 SEC-C motif DLE02_03306 PF07517 SecA DEAD-like domain DLE02_03306 PF01043 SecA preprotein cross-linking domain DLE02_03307 PF10417 C-terminal domain of 1-Cys peroxiredoxin DLE02_03307 PF00578 AhpC/TSA family DLE02_03308 PF00753 Metallo-beta-lactamase superfamily DLE02_03311 PF02875 Mur ligase family, glutamate ligase domain DLE02_03311 PF08245 Mur ligase middle domain DLE02_03312 PF01039 Carboxyl transferase domain DLE02_03313 PF00290 Tryptophan synthase alpha chain DLE02_03318 PF00291 Pyridoxal-phosphate dependent enzyme DLE02_03319 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DLE02_03320 PF00593 TonB dependent receptor DLE02_03320 PF07715 TonB-dependent Receptor Plug Domain DLE02_03321 PF01923 Cobalamin adenosyltransferase DLE02_03325 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DLE02_03326 PF00072 Response regulator receiver domain DLE02_03326 PF00486 Transcriptional regulatory protein, C terminal DLE02_03327 PF00672 HAMP domain DLE02_03327 PF00512 His Kinase A (phospho-acceptor) domain DLE02_03327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_03329 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_03329 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_03329 PF12806 Acetyl-CoA dehydrogenase C-terminal like DLE02_03329 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_03330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_03330 PF12806 Acetyl-CoA dehydrogenase C-terminal like DLE02_03330 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_03330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_03331 PF06146 Phosphate-starvation-inducible E DLE02_03335 PF07715 TonB-dependent Receptor Plug Domain DLE02_03335 PF00593 TonB dependent receptor DLE02_03337 PF02938 GAD domain DLE02_03337 PF00152 tRNA synthetases class II (D, K and N) DLE02_03337 PF01336 OB-fold nucleic acid binding domain DLE02_03339 PF00534 Glycosyl transferases group 1 DLE02_03339 PF13439 Glycosyltransferase Family 4 DLE02_03340 PF00535 Glycosyl transferase family 2 DLE02_03341 PF13439 Glycosyltransferase Family 4 DLE02_03341 PF00534 Glycosyl transferases group 1 DLE02_03345 PF00534 Glycosyl transferases group 1 DLE02_03345 PF13439 Glycosyltransferase Family 4 DLE02_03346 PF01522 Polysaccharide deacetylase DLE02_03348 PF01063 Amino-transferase class IV DLE02_03349 PF03710 Glutamate-ammonia ligase adenylyltransferase DLE02_03349 PF08335 GlnD PII-uridylyltransferase DLE02_03350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_03350 PF00512 His Kinase A (phospho-acceptor) domain DLE02_03350 PF07689 KaiB domain DLE02_03355 PF02547 Queuosine biosynthesis protein DLE02_03358 PF01702 Queuine tRNA-ribosyltransferase DLE02_03359 PF02699 Preprotein translocase subunit DLE02_03360 PF13721 SecD export protein N-terminal TM region DLE02_03360 PF02355 Protein export membrane protein DLE02_03360 PF07549 SecD/SecF GG Motif DLE02_03361 PF07549 SecD/SecF GG Motif DLE02_03361 PF02355 Protein export membrane protein DLE02_03362 PF02441 Flavoprotein DLE02_03362 PF04127 DNA / pantothenate metabolism flavoprotein DLE02_03363 PF04002 RadC-like JAB domain DLE02_03364 PF01062 Bestrophin, RFP-TM, chloride channel DLE02_03365 PF02811 PHP domain DLE02_03366 PF04279 Intracellular septation protein A DLE02_03367 PF03795 YCII-related domain DLE02_03369 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DLE02_03369 PF01266 FAD dependent oxidoreductase DLE02_03371 PF04461 Protein of unknown function (DUF520) DLE02_03373 PF03061 Thioesterase superfamily DLE02_03374 PF00085 Thioredoxin DLE02_03375 PF00561 alpha/beta hydrolase fold DLE02_03376 PF04273 Putative phosphatase (DUF442) DLE02_03376 PF00753 Metallo-beta-lactamase superfamily DLE02_03378 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DLE02_03378 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_03385 PF17152 Periplasmic sensor domain DLE02_03385 PF00990 Diguanylate cyclase, GGDEF domain DLE02_03386 PF00691 OmpA family DLE02_03386 PF01389 OmpA-like transmembrane domain DLE02_03387 PF00149 Calcineurin-like phosphoesterase DLE02_03387 PF10518 TAT (twin-arginine translocation) pathway signal sequence DLE02_03388 PF13091 PLD-like domain DLE02_03390 PF13167 GTP-binding GTPase N-terminal DLE02_03390 PF16360 GTP-binding GTPase Middle Region DLE02_03390 PF01926 50S ribosome-binding GTPase DLE02_03394 PF00149 Calcineurin-like phosphoesterase DLE02_03395 PF00398 Ribosomal RNA adenine dimethylase DLE02_03396 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DLE02_03397 PF00572 Ribosomal protein L13 DLE02_03398 PF00380 Ribosomal protein S9/S16 DLE02_03399 PF00043 Glutathione S-transferase, C-terminal domain DLE02_03399 PF13417 Glutathione S-transferase, N-terminal domain DLE02_03400 PF04386 Stringent starvation protein B DLE02_03402 PF02785 Biotin carboxylase C-terminal domain DLE02_03402 PF00364 Biotin-requiring enzyme DLE02_03402 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DLE02_03402 PF00289 Biotin carboxylase, N-terminal domain DLE02_03404 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_03404 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_03404 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_03405 PF01039 Carboxyl transferase domain DLE02_03408 PF00440 Bacterial regulatory proteins, tetR family DLE02_03408 PF17932 Tetracyclin repressor-like, C-terminal domain DLE02_03409 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_03409 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_03409 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_03418 PF01066 CDP-alcohol phosphatidyltransferase DLE02_03419 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DLE02_03423 PF00056 lactate/malate dehydrogenase, NAD binding domain DLE02_03423 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DLE02_03425 PF01464 Transglycosylase SLT domain DLE02_03425 PF10145 Phage-related minor tail protein DLE02_03425 PF01551 Peptidase family M23 DLE02_03426 PF04055 Radical SAM superfamily DLE02_03426 PF01938 TRAM domain DLE02_03426 PF00919 Uncharacterized protein family UPF0004 DLE02_03427 PF02562 PhoH-like protein DLE02_03428 PF02130 Uncharacterized protein family UPF0054 DLE02_03433 PF03358 NADPH-dependent FMN reductase DLE02_03434 PF03631 Virulence factor BrkB DLE02_03435 PF00892 EamA-like transporter family DLE02_03436 PF12833 Helix-turn-helix domain DLE02_03437 PF01557 Fumarylacetoacetate (FAA) hydrolase family DLE02_03446 PF08461 Ribonuclease R winged-helix domain DLE02_03446 PF08206 Ribonuclease B OB domain DLE02_03446 PF00773 RNB domain DLE02_03446 PF00575 S1 RNA binding domain DLE02_03446 PF17876 Cold shock domain DLE02_03447 PF01432 Peptidase family M3 DLE02_03448 PF09526 Probable metal-binding protein (DUF2387) DLE02_03455 PF03937 Flavinator of succinate dehydrogenase DLE02_03456 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_03456 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_03456 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_03457 PF00743 Flavin-binding monooxygenase-like DLE02_03458 PF01196 Ribosomal protein L17 DLE02_03459 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DLE02_03459 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DLE02_03459 PF01000 RNA polymerase Rpb3/RpoA insert domain DLE02_03460 PF00163 Ribosomal protein S4/S9 N-terminal domain DLE02_03460 PF01479 S4 domain DLE02_03461 PF00411 Ribosomal protein S11 DLE02_03462 PF00416 Ribosomal protein S13/S18 DLE02_03463 PF00444 Ribosomal protein L36 DLE02_03464 PF00344 SecY translocase DLE02_03465 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DLE02_03466 PF00327 Ribosomal protein L30p/L7e DLE02_03467 PF00333 Ribosomal protein S5, N-terminal domain DLE02_03467 PF03719 Ribosomal protein S5, C-terminal domain DLE02_03468 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DLE02_03469 PF00347 Ribosomal protein L6 DLE02_03470 PF00410 Ribosomal protein S8 DLE02_03471 PF00253 Ribosomal protein S14p/S29e DLE02_03472 PF00281 Ribosomal protein L5 DLE02_03472 PF00673 ribosomal L5P family C-terminus DLE02_03473 PF00467 KOW motif DLE02_03473 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DLE02_03474 PF00238 Ribosomal protein L14p/L23e DLE02_03475 PF00366 Ribosomal protein S17 DLE02_03476 PF00831 Ribosomal L29 protein DLE02_03477 PF00252 Ribosomal protein L16p/L10e DLE02_03478 PF00189 Ribosomal protein S3, C-terminal domain DLE02_03478 PF07650 KH domain DLE02_03479 PF00237 Ribosomal protein L22p/L17e DLE02_03480 PF00203 Ribosomal protein S19 DLE02_03481 PF00181 Ribosomal Proteins L2, RNA binding domain DLE02_03481 PF03947 Ribosomal Proteins L2, C-terminal domain DLE02_03482 PF00276 Ribosomal protein L23 DLE02_03483 PF00573 Ribosomal protein L4/L1 family DLE02_03484 PF00297 Ribosomal protein L3 DLE02_03485 PF00338 Ribosomal protein S10p/S20e DLE02_03486 PF00117 Glutamine amidotransferase class-I DLE02_03487 PF01053 Cys/Met metabolism PLP-dependent enzyme DLE02_03488 PF05872 Bacterial protein of unknown function (DUF853) DLE02_03489 PF00970 Oxidoreductase FAD-binding domain DLE02_03489 PF00042 Globin DLE02_03489 PF00175 Oxidoreductase NAD-binding domain DLE02_03490 PF02082 Transcriptional regulator DLE02_03491 PF01926 50S ribosome-binding GTPase DLE02_03493 PF00375 Sodium:dicarboxylate symporter family DLE02_03495 PF01553 Acyltransferase DLE02_03498 PF17191 RecG wedge domain DLE02_03498 PF00271 Helicase conserved C-terminal domain DLE02_03498 PF00270 DEAD/DEAH box helicase DLE02_03499 PF00156 Phosphoribosyl transferase domain DLE02_03500 PF00293 NUDIX domain DLE02_03501 PF03641 Possible lysine decarboxylase DLE02_03502 PF01544 CorA-like Mg2+ transporter protein DLE02_03504 PF05494 MlaC protein DLE02_03506 PF02405 Permease MlaE DLE02_03507 PF00005 ABC transporter DLE02_03508 PF03880 DbpA RNA binding domain DLE02_03508 PF00270 DEAD/DEAH box helicase DLE02_03508 PF12343 Cold shock protein DEAD box A DLE02_03508 PF00271 Helicase conserved C-terminal domain DLE02_03509 PF00459 Inositol monophosphatase family DLE02_03510 PF02779 Transketolase, pyrimidine binding domain DLE02_03510 PF02780 Transketolase, C-terminal domain DLE02_03510 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DLE02_03511 PF00925 GTP cyclohydrolase II DLE02_03512 PF01218 Coproporphyrinogen III oxidase DLE02_03513 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DLE02_03513 PF01488 Shikimate / quinate 5-dehydrogenase DLE02_03513 PF08501 Shikimate dehydrogenase substrate binding domain DLE02_03515 PF02770 Acyl-CoA dehydrogenase, middle domain DLE02_03515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DLE02_03515 PF12806 Acetyl-CoA dehydrogenase C-terminal like DLE02_03515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DLE02_03517 PF04024 PspC domain DLE02_03518 PF00571 CBS domain DLE02_03523 PF02091 Glycyl-tRNA synthetase alpha subunit DLE02_03524 PF05746 DALR anticodon binding domain DLE02_03524 PF02092 Glycyl-tRNA synthetase beta subunit DLE02_03526 PF00892 EamA-like transporter family DLE02_03527 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_03527 PF03466 LysR substrate binding domain DLE02_03530 PF00082 Subtilase family DLE02_03530 PF05922 Peptidase inhibitor I9 DLE02_03533 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DLE02_03534 PF04996 Succinylarginine dihydrolase DLE02_03535 PF00171 Aldehyde dehydrogenase family DLE02_03536 PF04958 Arginine N-succinyltransferase beta subunit DLE02_03537 PF00202 Aminotransferase class-III DLE02_03538 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DLE02_03538 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DLE02_03539 PF00324 Amino acid permease DLE02_03546 PF01594 AI-2E family transporter DLE02_03547 PF00080 Copper/zinc superoxide dismutase (SODC) DLE02_03548 PF12805 FUSC-like inner membrane protein yccS DLE02_03549 PF07690 Major Facilitator Superfamily DLE02_03551 PF02525 Flavodoxin-like fold DLE02_03552 PF03992 Antibiotic biosynthesis monooxygenase DLE02_03554 PF01565 FAD binding domain DLE02_03554 PF02913 FAD linked oxidases, C-terminal domain DLE02_03555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DLE02_03555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DLE02_03556 PF00892 EamA-like transporter family DLE02_03557 PF00892 EamA-like transporter family DLE02_03559 PF01925 Sulfite exporter TauE/SafE DLE02_03560 PF01509 TruB family pseudouridylate synthase (N terminal domain) DLE02_03560 PF16198 tRNA pseudouridylate synthase B C-terminal domain DLE02_03560 PF09157 Pseudouridine synthase II TruB, C-terminal DLE02_03561 PF03280 Proteobacterial lipase chaperone protein DLE02_03562 PF00561 alpha/beta hydrolase fold DLE02_03563 PF01245 Ribosomal protein L19 DLE02_03564 PF01746 tRNA (Guanine-1)-methyltransferase DLE02_03565 PF01782 RimM N-terminal domain DLE02_03565 PF05239 PRC-barrel domain DLE02_03566 PF00886 Ribosomal protein S16 DLE02_03574 PF02401 LytB protein DLE02_03575 PF00625 Guanylate kinase DLE02_03576 PF01192 RNA polymerase Rpb6 DLE02_03577 PF13291 ACT domain DLE02_03577 PF04607 Region found in RelA / SpoT proteins DLE02_03577 PF02824 TGS domain DLE02_03578 PF01042 Endoribonuclease L-PSP DLE02_03579 PF04324 BFD-like [2Fe-2S] binding domain DLE02_03580 PF00210 Ferritin-like domain DLE02_03581 PF15864 Protein glycosylation ligase DLE02_03581 PF04932 O-Antigen ligase DLE02_03581 PF11846 Virulence factor membrane-bound polymerase, C-terminal DLE02_03582 PF07963 Prokaryotic N-terminal methylation motif DLE02_03582 PF00114 Pilin (bacterial filament) DLE02_03584 PF04536 TPM domain DLE02_03585 PF04011 LemA family DLE02_03587 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DLE02_03587 PF07992 Pyridine nucleotide-disulphide oxidoreductase DLE02_03588 PF01645 Conserved region in glutamate synthase DLE02_03588 PF04898 Glutamate synthase central domain DLE02_03588 PF00310 Glutamine amidotransferases class-II DLE02_03588 PF01493 GXGXG motif DLE02_03590 PF01761 3-dehydroquinate synthase DLE02_03591 PF01202 Shikimate kinase DLE02_03592 PF11741 AMIN domain DLE02_03592 PF00263 Bacterial type II and III secretion system protein DLE02_03592 PF03958 Bacterial type II/III secretion system short domain DLE02_03592 PF07660 Secretin and TonB N terminus short domain DLE02_03594 PF04350 Pilus assembly protein, PilO DLE02_03595 PF05137 Fimbrial assembly protein (PilN) DLE02_03596 PF11104 Type IV pilus assembly protein PilM; DLE02_03597 PF00905 Penicillin binding protein transpeptidase domain DLE02_03597 PF17092 Penicillin-binding protein OB-like domain DLE02_03597 PF00912 Transglycosylase DLE02_03598 PF13847 Methyltransferase domain DLE02_03600 PF00953 Glycosyl transferase family 4 DLE02_03601 PF01225 Mur ligase family, catalytic domain DLE02_03601 PF02875 Mur ligase family, glutamate ligase domain DLE02_03601 PF08245 Mur ligase middle domain DLE02_03602 PF01225 Mur ligase family, catalytic domain DLE02_03602 PF02875 Mur ligase family, glutamate ligase domain DLE02_03602 PF08245 Mur ligase middle domain DLE02_03603 PF03717 Penicillin-binding Protein dimerisation domain DLE02_03603 PF00905 Penicillin binding protein transpeptidase domain DLE02_03605 PF01795 MraW methylase family DLE02_03608 PF00749 tRNA synthetases class I (E and Q), catalytic domain DLE02_03611 PF00324 Amino acid permease DLE02_03617 PF01545 Cation efflux family DLE02_03618 PF00873 AcrB/AcrD/AcrF family DLE02_03619 PF00529 HlyD membrane-fusion protein of T1SS DLE02_03619 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DLE02_03623 PF00005 ABC transporter DLE02_03623 PF12848 ABC transporter DLE02_03624 PF01053 Cys/Met metabolism PLP-dependent enzyme DLE02_03625 PF00106 short chain dehydrogenase DLE02_03626 PF01740 STAS domain DLE02_03626 PF00916 Sulfate permease family DLE02_03627 PF17674 HHH domain DLE02_03627 PF00575 S1 RNA binding domain DLE02_03627 PF09371 Tex-like protein N-terminal domain DLE02_03627 PF16921 Tex protein YqgF-like domain DLE02_03628 PF00072 Response regulator receiver domain DLE02_03628 PF00486 Transcriptional regulatory protein, C terminal DLE02_03629 PF00512 His Kinase A (phospho-acceptor) domain DLE02_03629 PF00672 HAMP domain DLE02_03629 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_03630 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DLE02_03630 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DLE02_03631 PF00583 Acetyltransferase (GNAT) family DLE02_03635 PF00475 Imidazoleglycerol-phosphate dehydratase DLE02_03636 PF00117 Glutamine amidotransferase class-I DLE02_03639 PF00977 Histidine biosynthesis protein DLE02_03644 PF01636 Phosphotransferase enzyme family DLE02_03645 PF00977 Histidine biosynthesis protein DLE02_03648 PF00230 Major intrinsic protein DLE02_03653 PF02705 K+ potassium transporter DLE02_03655 PF12833 Helix-turn-helix domain DLE02_03659 PF02525 Flavodoxin-like fold DLE02_03660 PF01638 HxlR-like helix-turn-helix DLE02_03664 PF01638 HxlR-like helix-turn-helix DLE02_03667 PF02311 AraC-like ligand binding domain DLE02_03667 PF12833 Helix-turn-helix domain DLE02_03668 PF00248 Aldo/keto reductase family DLE02_03673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_03673 PF03466 LysR substrate binding domain DLE02_03674 PF07690 Major Facilitator Superfamily DLE02_03679 PF01593 Flavin containing amine oxidoreductase DLE02_03680 PF02678 Pirin DLE02_03680 PF05726 Pirin C-terminal cupin domain DLE02_03681 PF00857 Isochorismatase family DLE02_03682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_03683 PF00171 Aldehyde dehydrogenase family DLE02_03684 PF00202 Aminotransferase class-III DLE02_03685 PF00155 Aminotransferase class I and II DLE02_03685 PF00392 Bacterial regulatory proteins, gntR family DLE02_03686 PF00324 Amino acid permease DLE02_03688 PF03591 AzlC protein DLE02_03690 PF00436 Single-strand binding protein family DLE02_03691 PF07690 Major Facilitator Superfamily DLE02_03693 PF03070 TENA/THI-4/PQQC family DLE02_03693 PF02581 Thiamine monophosphate synthase DLE02_03693 PF08543 Phosphomethylpyrimidine kinase DLE02_03694 PF06942 GlpM protein DLE02_03696 PF00107 Zinc-binding dehydrogenase DLE02_03696 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_03697 PF00440 Bacterial regulatory proteins, tetR family DLE02_03697 PF16925 Tetracyclin repressor-like, C-terminal domain DLE02_03698 PF17760 UvrA interaction domain DLE02_03698 PF17755 UvrA DNA-binding domain DLE02_03698 PF00005 ABC transporter DLE02_03699 PF00990 Diguanylate cyclase, GGDEF domain DLE02_03701 PF02028 BCCT, betaine/carnitine/choline family transporter DLE02_03703 PF00474 Sodium:solute symporter family DLE02_03704 PF04341 Protein of unknown function, DUF485 DLE02_03705 PF00072 Response regulator receiver domain DLE02_03705 PF01627 Hpt domain DLE02_03705 PF00512 His Kinase A (phospho-acceptor) domain DLE02_03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_03705 PF00672 HAMP domain DLE02_03707 PF00072 Response regulator receiver domain DLE02_03707 PF00196 Bacterial regulatory proteins, luxR family DLE02_03708 PF03358 NADPH-dependent FMN reductase DLE02_03709 PF00296 Luciferase-like monooxygenase DLE02_03710 PF01037 Lrp/AsnC ligand binding domain DLE02_03711 PF00857 Isochorismatase family DLE02_03712 PF16177 Acetyl-coenzyme A synthetase N-terminus DLE02_03712 PF13193 AMP-binding enzyme C-terminal domain DLE02_03712 PF00501 AMP-binding enzyme DLE02_03714 PF00924 Mechanosensitive ion channel DLE02_03715 PF04452 RNA methyltransferase DLE02_03716 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DLE02_03717 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DLE02_03720 PF00472 RF-1 domain DLE02_03720 PF03462 PCRF domain DLE02_03722 PF01368 DHH family DLE02_03722 PF02272 DHHA1 domain DLE02_03722 PF17768 RecJ OB domain DLE02_03723 PF01243 Pyridoxamine 5'-phosphate oxidase DLE02_03723 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DLE02_03724 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DLE02_03724 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DLE02_03724 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DLE02_03724 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DLE02_03725 PF00571 CBS domain DLE02_03725 PF00478 IMP dehydrogenase / GMP reductase domain DLE02_03726 PF03692 Putative zinc- or iron-chelating domain DLE02_03727 PF01613 Flavin reductase like domain DLE02_03727 PF00258 Flavodoxin DLE02_03728 PF00593 TonB dependent receptor DLE02_03728 PF07715 TonB-dependent Receptor Plug Domain DLE02_03729 PF01169 Uncharacterized protein family UPF0016 DLE02_03731 PF02817 e3 binding domain DLE02_03731 PF00364 Biotin-requiring enzyme DLE02_03731 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DLE02_03732 PF00456 Transketolase, thiamine diphosphate binding domain DLE02_03732 PF17831 Pyruvate dehydrogenase E1 component middle domain DLE02_03733 PF01551 Peptidase family M23 DLE02_03735 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DLE02_03736 PF12327 FtsZ family, C-terminal domain DLE02_03736 PF00091 Tubulin/FtsZ family, GTPase domain DLE02_03737 PF02491 SHS2 domain inserted in FTSA DLE02_03738 PF03799 Cell division protein FtsQ DLE02_03738 PF08478 POTRA domain, FtsQ-type DLE02_03739 PF07478 D-ala D-ala ligase C-terminus DLE02_03739 PF01820 D-ala D-ala ligase N-terminus DLE02_03740 PF01225 Mur ligase family, catalytic domain DLE02_03740 PF02875 Mur ligase family, glutamate ligase domain DLE02_03740 PF08245 Mur ligase middle domain DLE02_03741 PF04101 Glycosyltransferase family 28 C-terminal domain DLE02_03741 PF03033 Glycosyltransferase family 28 N-terminal domain DLE02_03742 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DLE02_03742 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DLE02_03744 PF07715 TonB-dependent Receptor Plug Domain DLE02_03744 PF00593 TonB dependent receptor DLE02_03745 PF00156 Phosphoribosyl transferase domain DLE02_03746 PF03372 Endonuclease/Exonuclease/phosphatase family DLE02_03747 PF03960 ArsC family DLE02_03749 PF07859 alpha/beta hydrolase fold DLE02_03751 PF00990 Diguanylate cyclase, GGDEF domain DLE02_03751 PF07694 5TMR of 5TMR-LYT DLE02_03752 PF02683 Cytochrome C biogenesis protein transmembrane region DLE02_03752 PF11412 Disulphide bond corrector protein DsbC DLE02_03758 PF00576 HIUase/Transthyretin family DLE02_03759 PF00860 Permease family DLE02_03761 PF01494 FAD binding domain DLE02_03762 PF03561 Allantoicase repeat DLE02_03763 PF04115 Ureidoglycolate lyase DLE02_03764 PF00204 DNA gyrase B DLE02_03764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_03764 PF01751 Toprim domain DLE02_03764 PF00986 DNA gyrase B subunit, carboxyl terminus DLE02_03765 PF05728 Uncharacterised protein family (UPF0227) DLE02_03770 PF00182 Chitinase class I DLE02_03771 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DLE02_03771 PF13296 Putative type VI secretion system Rhs element Vgr DLE02_03771 PF04717 Type VI secretion system, phage-baseplate injector DLE02_03772 PF02600 Disulfide bond formation protein DsbB DLE02_03773 PF04262 Glutamate-cysteine ligase DLE02_03776 PF04286 Protein of unknown function (DUF445) DLE02_03777 PF00155 Aminotransferase class I and II DLE02_03778 PF01554 MatE DLE02_03779 PF00106 short chain dehydrogenase DLE02_03781 PF00486 Transcriptional regulatory protein, C terminal DLE02_03781 PF00072 Response regulator receiver domain DLE02_03782 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DLE02_03782 PF11808 Phosphate regulon sensor protein PhoR DLE02_03782 PF00989 PAS fold DLE02_03782 PF00512 His Kinase A (phospho-acceptor) domain DLE02_03785 PF03069 Acetamidase/Formamidase family DLE02_03786 PF02666 Phosphatidylserine decarboxylase DLE02_03787 PF00581 Rhodanese-like domain DLE02_03788 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DLE02_03788 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DLE02_03790 PF00199 Catalase DLE02_03790 PF06628 Catalase-related immune-responsive DLE02_03791 PF02580 D-Tyr-tRNA(Tyr) deacylase DLE02_03796 PF00925 GTP cyclohydrolase II DLE02_03796 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DLE02_03797 PF00885 6,7-dimethyl-8-ribityllumazine synthase DLE02_03798 PF01029 NusB family DLE02_03799 PF00586 AIR synthase related protein, N-terminal domain DLE02_03799 PF02769 AIR synthase related protein, C-terminal domain DLE02_03800 PF04608 Phosphatidylglycerophosphatase A DLE02_03801 PF00132 Bacterial transferase hexapeptide (six repeats) DLE02_03801 PF12804 MobA-like NTP transferase domain DLE02_03801 PF14602 Hexapeptide repeat of succinyl-transferase DLE02_03802 PF01380 SIS domain DLE02_03803 PF01177 Asp/Glu/Hydantoin racemase DLE02_03804 PF13419 Haloacid dehalogenase-like hydrolase DLE02_03806 PF00491 Arginase family DLE02_03807 PF01979 Amidohydrolase family DLE02_03808 PF00324 Amino acid permease DLE02_03809 PF00221 Aromatic amino acid lyase DLE02_03810 PF01175 Urocanase Rossmann-like domain DLE02_03810 PF17391 Urocanase N-terminal domain DLE02_03810 PF17392 Urocanase C-terminal domain DLE02_03811 PF05962 HutD DLE02_03812 PF07702 UTRA domain DLE02_03812 PF00392 Bacterial regulatory proteins, gntR family DLE02_03814 PF02492 CobW/HypB/UreG, nucleotide-binding domain DLE02_03814 PF07683 Cobalamin synthesis protein cobW C-terminal domain DLE02_03816 PF00324 Amino acid permease DLE02_03818 PF14497 Glutathione S-transferase, C-terminal domain DLE02_03818 PF02798 Glutathione S-transferase, N-terminal domain DLE02_03819 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DLE02_03821 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DLE02_03822 PF04463 Protein of unknown function (DUF523) DLE02_03823 PF01554 MatE DLE02_03824 PF01758 Sodium Bile acid symporter family DLE02_03825 PF00857 Isochorismatase family DLE02_03826 PF00701 Dihydrodipicolinate synthetase family DLE02_03828 PF01259 SAICAR synthetase DLE02_03830 PF01226 Formate/nitrite transporter DLE02_03831 PF12002 MgsA AAA+ ATPase C terminal DLE02_03831 PF00004 ATPase family associated with various cellular activities (AAA) DLE02_03831 PF16193 AAA C-terminal domain DLE02_03832 PF07995 Glucose / Sorbosone dehydrogenase DLE02_03833 PF03692 Putative zinc- or iron-chelating domain DLE02_03834 PF07043 Protein of unknown function (DUF1328) DLE02_03837 PF14815 NUDIX domain DLE02_03837 PF00730 HhH-GPD superfamily base excision DNA repair protein DLE02_03837 PF00633 Helix-hairpin-helix motif DLE02_03837 PF10576 Iron-sulfur binding domain of endonuclease III DLE02_03840 PF03352 Methyladenine glycosylase DLE02_03841 PF08240 Alcohol dehydrogenase GroES-like domain DLE02_03841 PF00107 Zinc-binding dehydrogenase DLE02_03842 PF00392 Bacterial regulatory proteins, gntR family DLE02_03842 PF00155 Aminotransferase class I and II DLE02_03844 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_03844 PF03466 LysR substrate binding domain DLE02_03845 PF00248 Aldo/keto reductase family DLE02_03846 PF07690 Major Facilitator Superfamily DLE02_03848 PF01113 Dihydrodipicolinate reductase, N-terminus DLE02_03848 PF05173 Dihydrodipicolinate reductase, C-terminus DLE02_03850 PF00226 DnaJ domain DLE02_03850 PF00684 DnaJ central domain DLE02_03850 PF01556 DnaJ C terminal domain DLE02_03852 PF00873 AcrB/AcrD/AcrF family DLE02_03853 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DLE02_03854 PF08361 MAATS-type transcriptional repressor, C-terminal region DLE02_03854 PF00440 Bacterial regulatory proteins, tetR family DLE02_03855 PF00311 Phosphoenolpyruvate carboxylase DLE02_03856 PF00860 Permease family DLE02_03857 PF03466 LysR substrate binding domain DLE02_03857 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DLE02_03860 PF00920 Dehydratase family DLE02_03861 PF02911 Formyl transferase, C-terminal domain DLE02_03861 PF00551 Formyl transferase DLE02_03862 PF01189 16S rRNA methyltransferase RsmB/F DLE02_03862 PF01029 NusB family DLE02_03864 PF00209 Sodium:neurotransmitter symporter family DLE02_03905 PF00743 Flavin-binding monooxygenase-like DLE02_03907 PF01078 Magnesium chelatase, subunit ChlI DLE02_03907 PF13335 Magnesium chelatase, subunit ChlI C-terminal DLE02_04005 PF01807 CHC2 zinc finger DLE02_04005 PF10410 DnaB-helicase binding domain of primase DLE02_04005 PF08275 DNA primase catalytic core, N-terminal domain DLE02_04013 PF00625 Guanylate kinase DLE02_04018 PF02899 Phage integrase, N-terminal SAM-like domain DLE02_04018 PF00589 Phage integrase family DLE02_04025 PF07733 Bacterial DNA polymerase III alpha NTPase domain DLE02_04025 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DLE02_04025 PF14579 Helix-hairpin-helix motif DLE02_04025 PF02811 PHP domain DLE02_04029 PF00154 recA bacterial DNA recombination protein DLE02_04038 PF13476 AAA domain DLE02_04043 PF03477 ATP cone domain DLE02_04043 PF02867 Ribonucleotide reductase, barrel domain DLE02_04043 PF00317 Ribonucleotide reductase, all-alpha domain DLE02_04044 PF00268 Ribonucleotide reductase, small chain DLE02_04049 PF00692 dUTPase DLE02_04071 PF00929 Exonuclease DLE02_04098 PF02195 ParB-like nuclease domain DLE02_04099 PF09383 NIL domain DLE02_04099 PF00005 ABC transporter DLE02_04121 PF00877 NlpC/P60 family