locus-tag class description BV884_00005 PF08299 Bacterial dnaA protein helix-turn-helix BV884_00005 PF00308 Bacterial dnaA protein BV884_00005 PF11638 DnaA N-terminal domain BV884_00010 PF02767 DNA polymerase III beta subunit, central domain BV884_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BV884_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BV884_00015 PF02463 RecF/RecN/SMC N terminal domain BV884_00020 PF01751 Toprim domain BV884_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_00020 PF18053 DNA gyrase B subunit insert domain BV884_00020 PF00204 DNA gyrase B BV884_00020 PF00986 DNA gyrase B subunit, carboxyl terminus BV884_00030 PF09335 SNARE associated Golgi protein BV884_00035 PF12848 ABC transporter BV884_00035 PF00005 ABC transporter BV884_00055 PF01521 Iron-sulphur cluster biosynthesis BV884_00060 PF00561 alpha/beta hydrolase fold BV884_00065 PF03702 Anhydro-N-acetylmuramic acid kinase BV884_00070 PF00579 tRNA synthetases class I (W and Y) BV884_00110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BV884_00115 PF01252 Signal peptidase (SPase) II BV884_00120 PF06827 Zinc finger found in FPG and IleRS BV884_00120 PF08264 Anticodon-binding domain of tRNA BV884_00120 PF00133 tRNA synthetases class I (I, L, M and V) BV884_00125 PF01687 Riboflavin kinase BV884_00125 PF06574 FAD synthetase BV884_00135 PF01048 Phosphorylase superfamily BV884_00140 PF00440 Bacterial regulatory proteins, tetR family BV884_00140 PF08362 YcdC-like protein, C-terminal region BV884_00145 PF00005 ABC transporter BV884_00150 PF00528 Binding-protein-dependent transport system inner membrane component BV884_00155 PF00296 Luciferase-like monooxygenase BV884_00160 PF09084 NMT1/THI5 like BV884_00165 PF09084 NMT1/THI5 like BV884_00170 PF00696 Amino acid kinase family BV884_00170 PF00583 Acetyltransferase (GNAT) family BV884_00185 PF00106 short chain dehydrogenase BV884_00190 PF13419 Haloacid dehalogenase-like hydrolase BV884_00200 PF01323 DSBA-like thioredoxin domain BV884_00205 PF00440 Bacterial regulatory proteins, tetR family BV884_00205 PF08360 QacR-like protein, C-terminal region BV884_00210 PF00440 Bacterial regulatory proteins, tetR family BV884_00215 PF00175 Oxidoreductase NAD-binding domain BV884_00220 PF00487 Fatty acid desaturase BV884_00225 PF01138 3' exoribonuclease family, domain 1 BV884_00225 PF03725 3' exoribonuclease family, domain 2 BV884_00230 PF04185 Phosphoesterase family BV884_00230 PF05506 Domain of unknown function (DUF756) BV884_00235 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BV884_00235 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BV884_00240 PF01510 N-acetylmuramoyl-L-alanine amidase BV884_00245 PF03023 Lipid II flippase MurJ BV884_00250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BV884_00250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BV884_00255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BV884_00255 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BV884_00260 PF02706 Chain length determinant protein BV884_00260 PF13807 G-rich domain on putative tyrosine kinase BV884_00260 PF13614 AAA domain BV884_00265 PF01451 Low molecular weight phosphotyrosine protein phosphatase BV884_00270 PF02563 Polysaccharide biosynthesis/export protein BV884_00270 PF18412 Outer-membrane lipoprotein Wza C-terminal domain BV884_00270 PF10531 SLBB domain BV884_00275 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BV884_00275 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BV884_00275 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BV884_00280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BV884_00280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BV884_00285 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_00290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BV884_00300 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_00300 PF12464 Maltose acetyltransferase BV884_00300 PF14602 Hexapeptide repeat of succinyl-transferase BV884_00305 PF00534 Glycosyl transferases group 1 BV884_00305 PF13439 Glycosyltransferase Family 4 BV884_00320 PF00534 Glycosyl transferases group 1 BV884_00325 PF00535 Glycosyl transferase family 2 BV884_00330 PF02397 Bacterial sugar transferase BV884_00335 PF00483 Nucleotidyl transferase BV884_00340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BV884_00340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BV884_00340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BV884_00345 PF00342 Phosphoglucose isomerase BV884_00350 PF16363 GDP-mannose 4,6 dehydratase BV884_00355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BV884_00355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BV884_00355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BV884_00355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BV884_00360 PF02652 L-lactate permease BV884_00365 PF00392 Bacterial regulatory proteins, gntR family BV884_00365 PF07729 FCD domain BV884_00370 PF01070 FMN-dependent dehydrogenase BV884_00375 PF09330 D-lactate dehydrogenase, membrane binding BV884_00375 PF01565 FAD binding domain BV884_00380 PF00155 Aminotransferase class I and II BV884_00385 PF07729 FCD domain BV884_00385 PF00392 Bacterial regulatory proteins, gntR family BV884_00395 PF00285 Citrate synthase, C-terminal domain BV884_00400 PF00694 Aconitase C-terminal domain BV884_00400 PF00330 Aconitase family (aconitate hydratase) BV884_00440 PF02801 Beta-ketoacyl synthase, C-terminal domain BV884_00440 PF00109 Beta-ketoacyl synthase, N-terminal domain BV884_00450 PF08361 MAATS-type transcriptional repressor, C-terminal region BV884_00450 PF00440 Bacterial regulatory proteins, tetR family BV884_00465 PF00849 RNA pseudouridylate synthase BV884_00480 PF00593 TonB dependent receptor BV884_00480 PF07715 TonB-dependent Receptor Plug Domain BV884_00490 PF01037 Lrp/AsnC ligand binding domain BV884_00495 PF01266 FAD dependent oxidoreductase BV884_00500 PF01168 Alanine racemase, N-terminal domain BV884_00500 PF00842 Alanine racemase, C-terminal domain BV884_00505 PF01042 Endoribonuclease L-PSP BV884_00510 PF00324 Amino acid permease BV884_00515 PF00324 Amino acid permease BV884_00525 PF00171 Aldehyde dehydrogenase family BV884_00530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BV884_00530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BV884_00535 PF13193 AMP-binding enzyme C-terminal domain BV884_00535 PF00501 AMP-binding enzyme BV884_00540 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_00540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_00540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_00545 PF00378 Enoyl-CoA hydratase/isomerase BV884_00550 PF00378 Enoyl-CoA hydratase/isomerase BV884_00555 PF00083 Sugar (and other) transporter BV884_00555 PF07690 Major Facilitator Superfamily BV884_00560 PF00765 Autoinducer synthase BV884_00570 PF03472 Autoinducer binding domain BV884_00570 PF00196 Bacterial regulatory proteins, luxR family BV884_00575 PF00501 AMP-binding enzyme BV884_00580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_00580 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_00580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_00585 PF00975 Thioesterase domain BV884_00585 PF00109 Beta-ketoacyl synthase, N-terminal domain BV884_00585 PF00550 Phosphopantetheine attachment site BV884_00585 PF14765 Polyketide synthase dehydratase BV884_00585 PF16197 Ketoacyl-synthetase C-terminal extension BV884_00585 PF08242 Methyltransferase domain BV884_00585 PF02801 Beta-ketoacyl synthase, C-terminal domain BV884_00590 PF00550 Phosphopantetheine attachment site BV884_00590 PF00501 AMP-binding enzyme BV884_00590 PF13193 AMP-binding enzyme C-terminal domain BV884_00590 PF00668 Condensation domain BV884_00590 PF07993 Male sterility protein BV884_00595 PF00550 Phosphopantetheine attachment site BV884_00595 PF13193 AMP-binding enzyme C-terminal domain BV884_00595 PF00501 AMP-binding enzyme BV884_00595 PF00668 Condensation domain BV884_00595 PF00975 Thioesterase domain BV884_00610 PF12697 Alpha/beta hydrolase family BV884_00615 PF01648 4'-phosphopantetheinyl transferase superfamily BV884_00630 PF01722 BolA-like protein BV884_00640 PF13614 AAA domain BV884_00655 PF09335 SNARE associated Golgi protein BV884_00660 PF07681 DoxX BV884_00665 PF04286 Protein of unknown function (DUF445) BV884_00670 PF02540 NAD synthase BV884_00670 PF00958 GMP synthase C terminal domain BV884_00670 PF00117 Glutamine amidotransferase class-I BV884_00675 PF13427 Domain of unknown function (DUF4111) BV884_00675 PF01909 Nucleotidyltransferase domain BV884_00680 PF03551 Transcriptional regulator PadR-like family BV884_00690 PF02678 Pirin BV884_00690 PF05726 Pirin C-terminal cupin domain BV884_00710 PF00750 tRNA synthetases class I (R) BV884_00710 PF03485 Arginyl tRNA synthetase N terminal domain BV884_00710 PF05746 DALR anticodon binding domain BV884_00715 PF03949 Malic enzyme, NAD binding domain BV884_00715 PF00390 Malic enzyme, N-terminal domain BV884_00725 PF04261 Dyp-type peroxidase family BV884_00730 PF01810 LysE type translocator BV884_00735 PF00950 ABC 3 transport family BV884_00740 PF00005 ABC transporter BV884_00760 PF00119 ATP synthase A chain BV884_00765 PF00137 ATP synthase subunit C BV884_00770 PF00430 ATP synthase B/B' CF(0) BV884_00775 PF00213 ATP synthase delta (OSCP) subunit BV884_00780 PF00306 ATP synthase alpha/beta chain, C terminal domain BV884_00780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BV884_00780 PF02874 ATP synthase alpha/beta family, beta-barrel domain BV884_00785 PF00231 ATP synthase BV884_00790 PF02874 ATP synthase alpha/beta family, beta-barrel domain BV884_00790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BV884_00795 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BV884_00805 PF00255 Glutathione peroxidase BV884_00815 PF07690 Major Facilitator Superfamily BV884_00820 PF00440 Bacterial regulatory proteins, tetR family BV884_00825 PF00892 EamA-like transporter family BV884_00830 PF01300 Telomere recombination BV884_00835 PF17782 DprA winged helix domain BV884_00835 PF02481 DNA recombination-mediator protein A BV884_00845 PF01327 Polypeptide deformylase BV884_00870 PF00440 Bacterial regulatory proteins, tetR family BV884_00905 PF00291 Pyridoxal-phosphate dependent enzyme BV884_00915 PF03358 NADPH-dependent FMN reductase BV884_00935 PF08497 Radical SAM N-terminal BV884_00935 PF04055 Radical SAM superfamily BV884_00935 PF11842 Domain of unknown function (DUF3362) BV884_00950 PF11798 IMS family HHH motif BV884_00950 PF00817 impB/mucB/samB family BV884_00950 PF11799 impB/mucB/samB family C-terminal domain BV884_00960 PF07690 Major Facilitator Superfamily BV884_00965 PF03641 Possible lysine decarboxylase BV884_00970 PF03471 Transporter associated domain BV884_00970 PF03741 Integral membrane protein TerC family BV884_00975 PF02810 SEC-C motif BV884_00980 PF03458 UPF0126 domain BV884_00985 PF07690 Major Facilitator Superfamily BV884_00990 PF03989 DNA gyrase C-terminal domain, beta-propeller BV884_00990 PF00521 DNA gyrase/topoisomerase IV, subunit A BV884_00995 PF13193 AMP-binding enzyme C-terminal domain BV884_00995 PF00501 AMP-binding enzyme BV884_01010 PF00719 Inorganic pyrophosphatase BV884_01015 PF03573 outer membrane porin, OprD family BV884_01025 PF00701 Dihydrodipicolinate synthetase family BV884_01040 PF01078 Magnesium chelatase, subunit ChlI BV884_01040 PF13335 Magnesium chelatase, subunit ChlI C-terminal BV884_01050 PF00665 Integrase core domain BV884_01070 PF00582 Universal stress protein family BV884_01075 PF00916 Sulfate permease family BV884_01075 PF01740 STAS domain BV884_01110 PF00905 Penicillin binding protein transpeptidase domain BV884_01135 PF07690 Major Facilitator Superfamily BV884_01140 PF00440 Bacterial regulatory proteins, tetR family BV884_01140 PF02909 Tetracyclin repressor-like, C-terminal domain BV884_01165 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase BV884_01170 PF01636 Phosphotransferase enzyme family BV884_01180 PF13335 Magnesium chelatase, subunit ChlI C-terminal BV884_01180 PF01078 Magnesium chelatase, subunit ChlI BV884_01190 PF00543 Nitrogen regulatory protein P-II BV884_01195 PF00909 Ammonium Transporter Family BV884_01200 PF03477 ATP cone domain BV884_01205 PF01872 RibD C-terminal domain BV884_01205 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BV884_01215 PF00677 Lumazine binding domain BV884_01235 PF02789 Cytosol aminopeptidase family, N-terminal domain BV884_01235 PF00883 Cytosol aminopeptidase family, catalytic domain BV884_01245 PF03739 Lipopolysaccharide export system permease LptF/LptG BV884_01250 PF01676 Metalloenzyme superfamily BV884_01250 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BV884_01255 PF03572 Peptidase family S41 BV884_01255 PF00595 PDZ domain BV884_01260 PF02954 Bacterial regulatory protein, Fis family BV884_01260 PF00072 Response regulator receiver domain BV884_01260 PF00158 Sigma-54 interaction domain BV884_01265 PF00512 His Kinase A (phospho-acceptor) domain BV884_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_01270 PF00072 Response regulator receiver domain BV884_01270 PF00196 Bacterial regulatory proteins, luxR family BV884_01275 PF00768 D-alanyl-D-alanine carboxypeptidase BV884_01280 PF00291 Pyridoxal-phosphate dependent enzyme BV884_01285 PF03447 Homoserine dehydrogenase, NAD binding domain BV884_01285 PF00742 Homoserine dehydrogenase BV884_01285 PF01842 ACT domain BV884_01290 PF10411 Disulfide bond isomerase protein N-terminus BV884_01290 PF13098 Thioredoxin-like domain BV884_01295 PF00589 Phage integrase family BV884_01295 PF02899 Phage integrase, N-terminal SAM-like domain BV884_01305 PF07670 Nucleoside recognition BV884_01305 PF07664 Ferrous iron transport protein B C terminus BV884_01305 PF02421 Ferrous iron transport protein B BV884_01315 PF08245 Mur ligase middle domain BV884_01315 PF02875 Mur ligase family, glutamate ligase domain BV884_01320 PF01098 Cell cycle protein BV884_01325 PF00749 tRNA synthetases class I (E and Q), catalytic domain BV884_01330 PF01258 Prokaryotic dksA/traR C4-type zinc finger BV884_01335 PF00149 Calcineurin-like phosphoesterase BV884_01340 PF00293 NUDIX domain BV884_01345 PF01964 Radical SAM ThiC family BV884_01345 PF13667 ThiC-associated domain BV884_01360 PF00892 EamA-like transporter family BV884_01365 PF02321 Outer membrane efflux protein BV884_01370 PF01895 PhoU domain BV884_01375 PF04362 Bacterial Fe(2+) trafficking BV884_01380 PF00206 Lyase BV884_01380 PF14698 Argininosuccinate lyase C-terminal BV884_01385 PF07694 5TMR of 5TMR-LYT BV884_01385 PF06580 Histidine kinase BV884_01385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_01390 PF04397 LytTr DNA-binding domain BV884_01390 PF00072 Response regulator receiver domain BV884_01395 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BV884_01395 PF03900 Porphobilinogen deaminase, C-terminal domain BV884_01420 PF00816 H-NS histone family BV884_01435 PF03958 Bacterial type II/III secretion system short domain BV884_01435 PF00263 Bacterial type II and III secretion system protein BV884_01440 PF12401 Protein of unknown function (DUF2662) BV884_01440 PF00498 FHA domain BV884_01445 PF13419 Haloacid dehalogenase-like hydrolase BV884_01450 PF00425 chorismate binding enzyme BV884_01450 PF04715 Anthranilate synthase component I, N terminal region BV884_01475 PF03144 Elongation factor Tu domain 2 BV884_01475 PF00009 Elongation factor Tu GTP binding domain BV884_01475 PF03143 Elongation factor Tu C-terminal domain BV884_01485 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BV884_01490 PF02357 Transcription termination factor nusG BV884_01490 PF00467 KOW motif BV884_01495 PF00298 Ribosomal protein L11, RNA binding domain BV884_01495 PF03946 Ribosomal protein L11, N-terminal domain BV884_01500 PF00687 Ribosomal protein L1p/L10e family BV884_01505 PF00466 Ribosomal protein L10 BV884_01510 PF00542 Ribosomal protein L7/L12 C-terminal domain BV884_01510 PF16320 Ribosomal protein L7/L12 dimerisation domain BV884_01515 PF10385 RNA polymerase beta subunit external 1 domain BV884_01515 PF04560 RNA polymerase Rpb2, domain 7 BV884_01515 PF00562 RNA polymerase Rpb2, domain 6 BV884_01515 PF04561 RNA polymerase Rpb2, domain 2 BV884_01515 PF04565 RNA polymerase Rpb2, domain 3 BV884_01515 PF04563 RNA polymerase beta subunit BV884_01520 PF04997 RNA polymerase Rpb1, domain 1 BV884_01520 PF00623 RNA polymerase Rpb1, domain 2 BV884_01520 PF04983 RNA polymerase Rpb1, domain 3 BV884_01520 PF05000 RNA polymerase Rpb1, domain 4 BV884_01520 PF04998 RNA polymerase Rpb1, domain 5 BV884_01540 PF00561 alpha/beta hydrolase fold BV884_01545 PF13726 Na+-H+ antiporter family BV884_01545 PF03553 Na+/H+ antiporter family BV884_01560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_01560 PF00183 Hsp90 protein BV884_01575 PF01323 DSBA-like thioredoxin domain BV884_01585 PF00376 MerR family regulatory protein BV884_01585 PF09278 MerR, DNA binding BV884_01605 PF00108 Thiolase, N-terminal domain BV884_01605 PF02803 Thiolase, C-terminal domain BV884_01610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BV884_01610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BV884_01610 PF00378 Enoyl-CoA hydratase/isomerase BV884_01630 PF01541 GIY-YIG catalytic domain BV884_01630 PF08459 UvrC Helix-hairpin-helix N-terminal BV884_01630 PF02151 UvrB/uvrC motif BV884_01640 PF01066 CDP-alcohol phosphatidyltransferase BV884_01645 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BV884_01645 PF12833 Helix-turn-helix domain BV884_01645 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BV884_01645 PF02805 Metal binding domain of Ada BV884_01670 PF13533 Biotin-lipoyl like BV884_01675 PF03652 Holliday junction resolvase BV884_01680 PF02622 Uncharacterized ACR, COG1678 BV884_01685 PF02463 RecF/RecN/SMC N terminal domain BV884_01695 PF06865 Pyrimidine/purine nucleoside phosphorylase BV884_01700 PF00588 SpoU rRNA Methylase family BV884_01700 PF08032 RNA 2'-O ribose methyltransferase substrate binding BV884_01710 PF01121 Dephospho-CoA kinase BV884_01715 PF01478 Type IV leader peptidase family BV884_01715 PF06750 Bacterial Peptidase A24 N-terminal domain BV884_01720 PF00482 Type II secretion system (T2SS), protein F BV884_01725 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BV884_01725 PF00437 Type II/IV secretion system protein BV884_01730 PF00121 Triosephosphate isomerase BV884_01735 PF03840 Preprotein translocase SecG subunit BV884_01755 PF02576 RimP N-terminal domain BV884_01755 PF17384 RimP C-terminal SH3 domain BV884_01760 PF13184 NusA-like KH domain BV884_01760 PF08529 NusA N-terminal domain BV884_01760 PF00575 S1 RNA binding domain BV884_01765 PF11987 Translation-initiation factor 2 BV884_01765 PF00009 Elongation factor Tu GTP binding domain BV884_01765 PF08364 Bacterial translation initiation factor IF-2 associated region BV884_01765 PF04760 Translation initiation factor IF-2, N-terminal region BV884_01770 PF02033 Ribosome-binding factor A BV884_01780 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BV884_01790 PF00361 Proton-conducting membrane transporter BV884_01795 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BV884_01800 PF00361 Proton-conducting membrane transporter BV884_01800 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BV884_01800 PF13244 Domain of unknown function (DUF4040) BV884_01800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BV884_01815 PF01502 Phosphoribosyl-AMP cyclohydrolase BV884_01820 PF01494 FAD binding domain BV884_01825 PF03109 ABC1 family BV884_01835 PF01209 ubiE/COQ5 methyltransferase family BV884_01845 PF03976 Polyphosphate kinase 2 (PPK2) BV884_01855 PF17946 RecC C-terminal domain BV884_01860 PF13361 UvrD-like helicase C-terminal domain BV884_01860 PF12705 PD-(D/E)XK nuclease superfamily BV884_01860 PF00580 UvrD/REP helicase N-terminal domain BV884_01865 PF13538 UvrD-like helicase C-terminal domain BV884_01875 PF00312 Ribosomal protein S15 BV884_01880 PF00575 S1 RNA binding domain BV884_01880 PF03725 3' exoribonuclease family, domain 2 BV884_01880 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BV884_01880 PF01138 3' exoribonuclease family, domain 1 BV884_01880 PF00013 KH domain BV884_01885 PF01544 CorA-like Mg2+ transporter protein BV884_01895 PF00226 DnaJ domain BV884_01895 PF01556 DnaJ C terminal domain BV884_01905 PF01430 Hsp33 protein BV884_01910 PF02254 TrkA-N domain BV884_01910 PF00999 Sodium/hydrogen exchanger family BV884_01915 PF00271 Helicase conserved C-terminal domain BV884_01915 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BV884_01915 PF18074 Primosomal protein N C-terminal domain BV884_01915 PF17764 3′ DNA-binding domain (3′BD) BV884_01915 PF00270 DEAD/DEAH box helicase BV884_01920 PF00482 Type II secretion system (T2SS), protein F BV884_01925 PF07963 Prokaryotic N-terminal methylation motif BV884_01925 PF08334 Type II secretion system (T2SS), protein G BV884_01935 PF01588 Putative tRNA binding domain BV884_01940 PF00795 Carbon-nitrogen hydrolase BV884_01945 PF03471 Transporter associated domain BV884_01945 PF00571 CBS domain BV884_01950 PF01206 Sulfurtransferase TusA BV884_01965 PF01177 Asp/Glu/Hydantoin racemase BV884_01975 PF00762 Ferrochelatase BV884_01980 PF00753 Metallo-beta-lactamase superfamily BV884_01985 PF03884 DNA gyrase inhibitor YacG BV884_02005 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BV884_02015 PF01197 Ribosomal protein L31 BV884_02020 PF03109 ABC1 family BV884_02025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_02025 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BV884_02030 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BV884_02030 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_02030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_02035 PF01554 MatE BV884_02045 PF04055 Radical SAM superfamily BV884_02045 PF06969 HemN C-terminal domain BV884_02050 PF00106 short chain dehydrogenase BV884_02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_02055 PF03466 LysR substrate binding domain BV884_02070 PF00501 AMP-binding enzyme BV884_02070 PF13193 AMP-binding enzyme C-terminal domain BV884_02075 PF00575 S1 RNA binding domain BV884_02075 PF12111 Polyribonucleotide phosphorylase C terminal BV884_02075 PF10150 Ribonuclease E/G family BV884_02085 PF00849 RNA pseudouridylate synthase BV884_02085 PF01479 S4 domain BV884_02090 PF13419 Haloacid dehalogenase-like hydrolase BV884_02095 PF08279 HTH domain BV884_02095 PF13280 WYL domain BV884_02100 PF02798 Glutathione S-transferase, N-terminal domain BV884_02110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_02110 PF03466 LysR substrate binding domain BV884_02115 PF12706 Beta-lactamase superfamily domain BV884_02120 PF00141 Peroxidase BV884_02125 PF01590 GAF domain BV884_02125 PF02896 PEP-utilising enzyme, TIM barrel domain BV884_02125 PF00391 PEP-utilising enzyme, mobile domain BV884_02125 PF05524 PEP-utilising enzyme, N-terminal BV884_02130 PF00293 NUDIX domain BV884_02150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_02150 PF03466 LysR substrate binding domain BV884_02160 PF00330 Aconitase family (aconitate hydratase) BV884_02165 PF00694 Aconitase C-terminal domain BV884_02175 PF00180 Isocitrate/isopropylmalate dehydrogenase BV884_02190 PF01176 Translation initiation factor 1A / IF-1 BV884_02200 PF01416 tRNA pseudouridine synthase BV884_02220 PF02774 Semialdehyde dehydrogenase, dimerisation domain BV884_02220 PF01118 Semialdehyde dehydrogenase, NAD binding domain BV884_02230 PF00375 Sodium:dicarboxylate symporter family BV884_02240 PF03279 Bacterial lipid A biosynthesis acyltransferase BV884_02245 PF01810 LysE type translocator BV884_02260 PF08240 Alcohol dehydrogenase GroES-like domain BV884_02260 PF00107 Zinc-binding dehydrogenase BV884_02265 PF01638 HxlR-like helix-turn-helix BV884_02275 PF01751 Toprim domain BV884_02275 PF01396 Topoisomerase DNA binding C4 zinc finger BV884_02275 PF08272 Topoisomerase I zinc-ribbon-like BV884_02275 PF01131 DNA topoisomerase BV884_02290 PF00580 UvrD/REP helicase N-terminal domain BV884_02290 PF13361 UvrD-like helicase C-terminal domain BV884_02295 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BV884_02315 PF02254 TrkA-N domain BV884_02315 PF00999 Sodium/hydrogen exchanger family BV884_02320 PF00471 Ribosomal protein L33 BV884_02325 PF00830 Ribosomal L28 family BV884_02330 PF00171 Aldehyde dehydrogenase family BV884_02340 PF01842 ACT domain BV884_02340 PF00551 Formyl transferase BV884_02350 PF01618 MotA/TolQ/ExbB proton channel family BV884_02360 PF01625 Peptide methionine sulfoxide reductase BV884_02370 PF00186 Dihydrofolate reductase BV884_02375 PF00303 Thymidylate synthase BV884_02390 PF01790 Prolipoprotein diacylglyceryl transferase BV884_02410 PF00902 Sec-independent protein translocase protein (TatC) BV884_02415 PF02416 mttA/Hcf106 family BV884_02420 PF02416 mttA/Hcf106 family BV884_02430 PF01725 Ham1 family BV884_02440 PF00561 alpha/beta hydrolase fold BV884_02440 PF07021 Methionine biosynthesis protein MetW BV884_02445 PF00561 alpha/beta hydrolase fold BV884_02450 PF00682 HMGL-like BV884_02450 PF08502 LeuA allosteric (dimerisation) domain BV884_02455 PF18331 PKHD-type hydroxylase C-terminal domain BV884_02455 PF13640 2OG-Fe(II) oxygenase superfamily BV884_02460 PF00593 TonB dependent receptor BV884_02460 PF07715 TonB-dependent Receptor Plug Domain BV884_02465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BV884_02465 PF05697 Bacterial trigger factor protein (TF) BV884_02465 PF05698 Bacterial trigger factor protein (TF) C-terminus BV884_02470 PF00574 Clp protease BV884_02475 PF10431 C-terminal, D2-small domain, of ClpB protein BV884_02475 PF06689 ClpX C4-type zinc finger BV884_02475 PF07724 AAA domain (Cdc48 subfamily) BV884_02490 PF05683 Fumarase C-terminus BV884_02490 PF05681 Fumarate hydratase (Fumerase) BV884_02495 PF07085 DRTGG domain BV884_02495 PF01515 Phosphate acetyl/butaryl transferase BV884_02500 PF00871 Acetokinase family BV884_02520 PF00920 Dehydratase family BV884_02525 PF01081 KDPG and KHG aldolase BV884_02530 PF02447 GntP family permease BV884_02535 PF01202 Shikimate kinase BV884_02540 PF00171 Aldehyde dehydrogenase family BV884_02545 PF00171 Aldehyde dehydrogenase family BV884_02550 PF00561 alpha/beta hydrolase fold BV884_02560 PF00933 Glycosyl hydrolase family 3 N terminal domain BV884_02565 PF11818 C-terminal domain of tail specific protease (DUF3340) BV884_02565 PF03572 Peptidase family S41 BV884_02565 PF17804 Tail specific protease N-terminal domain BV884_02565 PF00595 PDZ domain BV884_02570 PF13439 Glycosyltransferase Family 4 BV884_02570 PF00534 Glycosyl transferases group 1 BV884_02575 PF01569 PAP2 superfamily BV884_02580 PF04384 Iron-sulphur cluster assembly BV884_02585 PF00334 Nucleoside diphosphate kinase BV884_02590 PF04055 Radical SAM superfamily BV884_02600 PF13464 Domain of unknown function (DUF4115) BV884_02605 PF04551 GcpE protein BV884_02610 PF03129 Anticodon binding domain BV884_02610 PF13393 Histidyl-tRNA synthetase BV884_02620 PF13360 PQQ-like domain BV884_02625 PF01926 50S ribosome-binding GTPase BV884_02625 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BV884_02640 PF00550 Phosphopantetheine attachment site BV884_02645 PF00550 Phosphopantetheine attachment site BV884_02655 PF13193 AMP-binding enzyme C-terminal domain BV884_02655 PF00501 AMP-binding enzyme BV884_02670 PF00221 Aromatic amino acid lyase BV884_02690 PF04820 Tryptophan halogenase BV884_02700 PF02801 Beta-ketoacyl synthase, C-terminal domain BV884_02700 PF00109 Beta-ketoacyl synthase, N-terminal domain BV884_02715 PF00109 Beta-ketoacyl synthase, N-terminal domain BV884_02715 PF02801 Beta-ketoacyl synthase, C-terminal domain BV884_02730 PF02556 Preprotein translocase subunit SecB BV884_02735 PF00462 Glutaredoxin BV884_02745 PF03193 RsgA GTPase BV884_02750 PF00929 Exonuclease BV884_02765 PF02321 Outer membrane efflux protein BV884_02770 PF00005 ABC transporter BV884_02770 PF02687 FtsX-like permease family BV884_02770 PF12704 MacB-like periplasmic core domain BV884_02775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BV884_02790 PF09334 tRNA synthetases class I (M) BV884_02790 PF08264 Anticodon-binding domain of tRNA BV884_02790 PF00133 tRNA synthetases class I (I, L, M and V) BV884_02790 PF13603 Leucyl-tRNA synthetase, Domain 2 BV884_02805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BV884_02805 PF00205 Thiamine pyrophosphate enzyme, central domain BV884_02805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BV884_02810 PF10369 Small subunit of acetolactate synthase BV884_02815 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BV884_02815 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BV884_02820 PF00563 EAL domain BV884_02820 PF00990 Diguanylate cyclase, GGDEF domain BV884_02820 PF03707 Bacterial signalling protein N terminal repeat BV884_02845 PF16658 Class II release factor RF3, C-terminal domain BV884_02845 PF00009 Elongation factor Tu GTP binding domain BV884_02845 PF03144 Elongation factor Tu domain 2 BV884_02860 PF01026 TatD related DNase BV884_02865 PF00694 Aconitase C-terminal domain BV884_02865 PF00330 Aconitase family (aconitate hydratase) BV884_02875 PF00899 ThiF family BV884_02880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_02880 PF03466 LysR substrate binding domain BV884_02890 PF01207 Dihydrouridine synthase (Dus) BV884_02895 PF07690 Major Facilitator Superfamily BV884_02905 PF00892 EamA-like transporter family BV884_02910 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BV884_02910 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BV884_02915 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BV884_02920 PF02233 NAD(P) transhydrogenase beta subunit BV884_02925 PF00106 short chain dehydrogenase BV884_02935 PF01261 Xylose isomerase-like TIM barrel BV884_02940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BV884_02940 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BV884_02945 PF00378 Enoyl-CoA hydratase/isomerase BV884_02950 PF01627 Hpt domain BV884_02950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_02950 PF00072 Response regulator receiver domain BV884_02950 PF00512 His Kinase A (phospho-acceptor) domain BV884_02950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BV884_02950 PF00672 HAMP domain BV884_02955 PF00291 Pyridoxal-phosphate dependent enzyme BV884_02965 PF05958 tRNA (Uracil-5-)-methyltransferase BV884_02970 PF13291 ACT domain BV884_02970 PF02824 TGS domain BV884_02970 PF04607 Region found in RelA / SpoT proteins BV884_02980 PF03819 MazG nucleotide pyrophosphohydrolase domain BV884_02990 PF12627 Probable RNA and SrmB- binding site of polymerase A BV884_02990 PF12626 Polymerase A arginine-rich C-terminus BV884_02990 PF01743 Poly A polymerase head domain BV884_02995 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BV884_03000 PF02548 Ketopantoate hydroxymethyltransferase BV884_03005 PF02569 Pantoate-beta-alanine ligase BV884_03010 PF03668 P-loop ATPase protein family BV884_03015 PF00381 PTS HPr component phosphorylation site BV884_03020 PF04751 Protein of unknown function (DUF615) BV884_03025 PF13193 AMP-binding enzyme C-terminal domain BV884_03025 PF00501 AMP-binding enzyme BV884_03030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BV884_03030 PF02824 TGS domain BV884_03030 PF03129 Anticodon binding domain BV884_03030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BV884_03035 PF05198 Translation initiation factor IF-3, N-terminal domain BV884_03035 PF00707 Translation initiation factor IF-3, C-terminal domain BV884_03045 PF02798 Glutathione S-transferase, N-terminal domain BV884_03045 PF00043 Glutathione S-transferase, C-terminal domain BV884_03050 PF09335 SNARE associated Golgi protein BV884_03055 PF07690 Major Facilitator Superfamily BV884_03065 PF01632 Ribosomal protein L35 BV884_03070 PF00453 Ribosomal protein L20 BV884_03090 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BV884_03090 PF01409 tRNA synthetases class II core domain (F) BV884_03095 PF03147 Ferredoxin-fold anticodon binding domain BV884_03095 PF03484 tRNA synthetase B5 domain BV884_03095 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BV884_03095 PF03483 B3/4 domain BV884_03095 PF01588 Putative tRNA binding domain BV884_03100 PF00216 Bacterial DNA-binding protein BV884_03110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BV884_03110 PF07498 Rho termination factor, N-terminal domain BV884_03110 PF07497 Rho termination factor, RNA-binding domain BV884_03115 PF00085 Thioredoxin BV884_03120 PF02541 Ppx/GppA phosphatase family BV884_03125 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BV884_03130 PF09179 TilS substrate binding domain BV884_03130 PF01171 PP-loop family BV884_03130 PF11734 TilS substrate C-terminal domain BV884_03135 PF14748 Pyrroline-5-carboxylate reductase dimerisation BV884_03135 PF03807 NADP oxidoreductase coenzyme F420-dependent BV884_03140 PF02325 YGGT family BV884_03145 PF00476 DNA polymerase family A BV884_03145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BV884_03145 PF01367 5'-3' exonuclease, C-terminal SAM fold BV884_03145 PF01612 3'-5' exonuclease BV884_03185 PF00437 Type II/IV secretion system protein BV884_03190 PF02566 OsmC-like protein BV884_03195 PF01047 MarR family BV884_03205 PF00795 Carbon-nitrogen hydrolase BV884_03250 PF00309 Sigma-54 factor, Activator interacting domain (AID) BV884_03250 PF04552 Sigma-54, DNA binding domain BV884_03250 PF04963 Sigma-54 factor, core binding domain BV884_03255 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BV884_03260 PF01722 BolA-like protein BV884_03265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BV884_03270 PF01634 ATP phosphoribosyltransferase BV884_03275 PF00815 Histidinol dehydrogenase BV884_03280 PF00155 Aminotransferase class I and II BV884_03285 PF04715 Anthranilate synthase component I, N terminal region BV884_03285 PF00425 chorismate binding enzyme BV884_03340 PF00293 NUDIX domain BV884_03345 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_03350 PF00814 Glycoprotease family BV884_03355 PF04445 Putative SAM-dependent methyltransferase BV884_03365 PF00756 Putative esterase BV884_03375 PF00834 Ribulose-phosphate 3 epimerase family BV884_03390 PF07731 Multicopper oxidase BV884_03390 PF07732 Multicopper oxidase BV884_03390 PF00394 Multicopper oxidase BV884_03395 PF05275 Copper resistance protein B precursor (CopB) BV884_03405 PF00893 Small Multidrug Resistance protein BV884_03410 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BV884_03410 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BV884_03415 PF01960 ArgJ family BV884_03420 PF02445 Quinolinate synthetase A protein BV884_03445 PF00962 Adenosine/AMP deaminase BV884_03450 PF08240 Alcohol dehydrogenase GroES-like domain BV884_03450 PF00107 Zinc-binding dehydrogenase BV884_03455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_03455 PF03466 LysR substrate binding domain BV884_03460 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_03460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_03460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_03465 PF07690 Major Facilitator Superfamily BV884_03470 PF02515 CoA-transferase family III BV884_03480 PF00890 FAD binding domain BV884_03480 PF14537 Cytochrome c3 BV884_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_03485 PF03466 LysR substrate binding domain BV884_03495 PF07690 Major Facilitator Superfamily BV884_03505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_03505 PF03466 LysR substrate binding domain BV884_03515 PF07687 Peptidase dimerisation domain BV884_03515 PF01546 Peptidase family M20/M25/M40 BV884_03520 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BV884_03520 PF12833 Helix-turn-helix domain BV884_03530 PF01810 LysE type translocator BV884_03535 PF03466 LysR substrate binding domain BV884_03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_03545 PF01717 Cobalamin-independent synthase, Catalytic domain BV884_03545 PF08267 Cobalamin-independent synthase, N-terminal domain BV884_03550 PF01613 Flavin reductase like domain BV884_03580 PF02567 Phenazine biosynthesis-like protein BV884_03600 PF13360 PQQ-like domain BV884_03600 PF01011 PQQ enzyme repeat BV884_03670 PF00512 His Kinase A (phospho-acceptor) domain BV884_03670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_03670 PF00672 HAMP domain BV884_03670 PF13756 Stimulus-sensing domain BV884_03670 PF13755 Sensor N-terminal transmembrane domain BV884_03680 PF00268 Ribonucleotide reductase, small chain BV884_03690 PF03477 ATP cone domain BV884_03690 PF00317 Ribonucleotide reductase, all-alpha domain BV884_03690 PF02867 Ribonucleotide reductase, barrel domain BV884_03700 PF00486 Transcriptional regulatory protein, C terminal BV884_03700 PF00072 Response regulator receiver domain BV884_03705 PF00512 His Kinase A (phospho-acceptor) domain BV884_03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_03705 PF00672 HAMP domain BV884_03715 PF17151 Periplasmic sensor domain BV884_03715 PF00990 Diguanylate cyclase, GGDEF domain BV884_03720 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BV884_03725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BV884_03730 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BV884_03730 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BV884_03740 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BV884_03740 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BV884_03740 PF10531 SLBB domain BV884_03745 PF00384 Molybdopterin oxidoreductase BV884_03745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BV884_03745 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BV884_03750 PF00146 NADH dehydrogenase BV884_03755 PF12838 4Fe-4S dicluster domain BV884_03760 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BV884_03765 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BV884_03770 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BV884_03770 PF00361 Proton-conducting membrane transporter BV884_03775 PF00361 Proton-conducting membrane transporter BV884_03780 PF00361 Proton-conducting membrane transporter BV884_03790 PF00313 'Cold-shock' DNA-binding domain BV884_03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_03795 PF03466 LysR substrate binding domain BV884_03800 PF00970 Oxidoreductase FAD-binding domain BV884_03800 PF00175 Oxidoreductase NAD-binding domain BV884_03815 PF05552 Conserved TM helix BV884_03825 PF00291 Pyridoxal-phosphate dependent enzyme BV884_03830 PF13533 Biotin-lipoyl like BV884_03855 PF09334 tRNA synthetases class I (M) BV884_03855 PF01588 Putative tRNA binding domain BV884_03865 PF10609 NUBPL iron-transfer P-loop NTPase BV884_03875 PF01048 Phosphorylase superfamily BV884_03890 PF00692 dUTPase BV884_03920 PF01207 Dihydrouridine synthase (Dus) BV884_03930 PF02978 Signal peptide binding domain BV884_03930 PF02881 SRP54-type protein, helical bundle domain BV884_03930 PF00448 SRP54-type protein, GTPase domain BV884_03935 PF03309 Type III pantothenate kinase BV884_03945 PF01925 Sulfite exporter TauE/SafE BV884_03955 PF02463 RecF/RecN/SMC N terminal domain BV884_03955 PF06470 SMC proteins Flexible Hinge Domain BV884_03965 PF00533 BRCA1 C Terminus (BRCT) domain BV884_03965 PF01653 NAD-dependent DNA ligase adenylation domain BV884_03965 PF03120 NAD-dependent DNA ligase OB-fold domain BV884_03965 PF12826 Helix-hairpin-helix motif BV884_03965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BV884_03970 PF00210 Ferritin-like domain BV884_03975 PF07690 Major Facilitator Superfamily BV884_03980 PF00982 Glycosyltransferase family 20 BV884_03985 PF02358 Trehalose-phosphatase BV884_03990 PF12697 Alpha/beta hydrolase family BV884_03990 PF08241 Methyltransferase domain BV884_03995 PF00202 Aminotransferase class-III BV884_03995 PF06968 Biotin and Thiamin Synthesis associated domain BV884_03995 PF04055 Radical SAM superfamily BV884_04000 PF00155 Aminotransferase class I and II BV884_04015 PF00849 RNA pseudouridylate synthase BV884_04015 PF01479 S4 domain BV884_04020 PF04079 Segregation and condensation complex subunit ScpB BV884_04025 PF02616 Segregation and condensation protein ScpA BV884_04030 PF01300 Telomere recombination BV884_04035 PF04315 Elongation factor P hydroxylase BV884_04040 PF02620 Large ribosomal RNA subunit accumulation protein YceD BV884_04045 PF01783 Ribosomal L32p protein family BV884_04050 PF00698 Acyl transferase domain BV884_04060 PF00550 Phosphopantetheine attachment site BV884_04065 PF01476 LysM domain BV884_04065 PF04972 BON domain BV884_04070 PF08543 Phosphomethylpyrimidine kinase BV884_04070 PF03070 TENA/THI-4/PQQC family BV884_04070 PF02581 Thiamine monophosphate synthase BV884_04080 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BV884_04095 PF02261 Aspartate decarboxylase BV884_04100 PF01195 Peptidyl-tRNA hydrolase BV884_04105 PF01386 Ribosomal L25p family BV884_04110 PF14572 Phosphoribosyl synthetase-associated domain BV884_04110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BV884_04135 PF00288 GHMP kinases N terminal domain BV884_04135 PF08544 GHMP kinases C terminal BV884_04140 PF03550 Outer membrane lipoprotein LolB BV884_04150 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BV884_04150 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BV884_04150 PF01488 Shikimate / quinate 5-dehydrogenase BV884_04155 PF10410 DnaB-helicase binding domain of primase BV884_04155 PF08278 DNA primase DnaG DnaB-binding BV884_04155 PF08275 DNA primase catalytic core, N-terminal domain BV884_04155 PF01807 CHC2 zinc finger BV884_04160 PF13525 Outer membrane lipoprotein BV884_04165 PF00849 RNA pseudouridylate synthase BV884_04165 PF01479 S4 domain BV884_04175 PF03358 NADPH-dependent FMN reductase BV884_04180 PF01668 SmpB protein BV884_04185 PF01467 Cytidylyltransferase-like BV884_04190 PF00037 4Fe-4S binding domain BV884_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_04210 PF03466 LysR substrate binding domain BV884_04215 PF00180 Isocitrate/isopropylmalate dehydrogenase BV884_04220 PF02028 BCCT, betaine/carnitine/choline family transporter BV884_04225 PF07859 alpha/beta hydrolase fold BV884_04230 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BV884_04230 PF00355 Rieske [2Fe-2S] domain BV884_04235 PF00171 Aldehyde dehydrogenase family BV884_04240 PF00111 2Fe-2S iron-sulfur cluster binding domain BV884_04240 PF00175 Oxidoreductase NAD-binding domain BV884_04240 PF00970 Oxidoreductase FAD-binding domain BV884_04255 PF00795 Carbon-nitrogen hydrolase BV884_04255 PF02540 NAD synthase BV884_04265 PF05726 Pirin C-terminal cupin domain BV884_04265 PF02678 Pirin BV884_04275 PF00109 Beta-ketoacyl synthase, N-terminal domain BV884_04275 PF02801 Beta-ketoacyl synthase, C-terminal domain BV884_04285 PF00164 Ribosomal protein S12/S23 BV884_04290 PF00177 Ribosomal protein S7p/S5e BV884_04295 PF03144 Elongation factor Tu domain 2 BV884_04295 PF03764 Elongation factor G, domain IV BV884_04295 PF14492 Elongation Factor G, domain II BV884_04295 PF00679 Elongation factor G C-terminus BV884_04295 PF00009 Elongation factor Tu GTP binding domain BV884_04300 PF03143 Elongation factor Tu C-terminal domain BV884_04300 PF03144 Elongation factor Tu domain 2 BV884_04300 PF00009 Elongation factor Tu GTP binding domain BV884_04315 PF00583 Acetyltransferase (GNAT) family BV884_04320 PF04377 Arginine-tRNA-protein transferase, C terminus BV884_04320 PF04376 Arginine-tRNA-protein transferase, N terminus BV884_04325 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BV884_04330 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_04335 PF01580 FtsK/SpoIIIE family BV884_04335 PF09397 Ftsk gamma domain BV884_04335 PF17854 FtsK alpha domain BV884_04335 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BV884_04340 PF01810 LysE type translocator BV884_04355 PF03776 Septum formation topological specificity factor MinE BV884_04360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BV884_04365 PF03775 Septum formation inhibitor MinC, C-terminal domain BV884_04375 PF01553 Acyltransferase BV884_04380 PF13488 Glycine zipper BV884_04380 PF00691 OmpA family BV884_04385 PF00580 UvrD/REP helicase N-terminal domain BV884_04385 PF13361 UvrD-like helicase C-terminal domain BV884_04390 PF00692 dUTPase BV884_04395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BV884_04395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BV884_04395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BV884_04395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BV884_04400 PF00696 Amino acid kinase family BV884_04410 PF13230 Glutamine amidotransferases class-II BV884_04415 PF01814 Hemerythrin HHE cation binding domain BV884_04430 PF03658 RnfH family Ubiquitin BV884_04435 PF04355 SmpA / OmlA family BV884_04440 PF01475 Ferric uptake regulator family BV884_04445 PF00437 Type II/IV secretion system protein BV884_04450 PF00437 Type II/IV secretion system protein BV884_04455 PF01168 Alanine racemase, N-terminal domain BV884_04465 PF12320 Type 5 capsule protein repressor C-terminal domain BV884_04465 PF00149 Calcineurin-like phosphoesterase BV884_04485 PF01370 NAD dependent epimerase/dehydratase family BV884_04485 PF08338 Domain of unknown function (DUF1731) BV884_04490 PF01266 FAD dependent oxidoreductase BV884_04495 PF00490 Delta-aminolevulinic acid dehydratase BV884_04500 PF03061 Thioesterase superfamily BV884_04505 PF13533 Biotin-lipoyl like BV884_04510 PF07690 Major Facilitator Superfamily BV884_04580 PF00929 Exonuclease BV884_04660 PF00145 C-5 cytosine-specific DNA methylase BV884_04670 PF01695 IstB-like ATP binding protein BV884_04865 PF05016 ParE toxin of type II toxin-antitoxin system, parDE BV884_04905 PF02767 DNA polymerase III beta subunit, central domain BV884_04905 PF00712 DNA polymerase III beta subunit, N-terminal domain BV884_04905 PF02768 DNA polymerase III beta subunit, C-terminal domain BV884_05000 PF00589 Phage integrase family BV884_05000 PF13356 Arm DNA-binding domain BV884_05075 PF07693 KAP family P-loop domain BV884_05090 PF01026 TatD related DNase BV884_05115 PF00083 Sugar (and other) transporter BV884_05120 PF00701 Dihydrodipicolinate synthetase family BV884_05130 PF04542 Sigma-70 region 2 BV884_05130 PF08281 Sigma-70, region 4 BV884_05140 PF07715 TonB-dependent Receptor Plug Domain BV884_05140 PF00593 TonB dependent receptor BV884_05160 PF01126 Heme oxygenase BV884_05185 PF13520 Amino acid permease BV884_05190 PF02574 Homocysteine S-methyltransferase BV884_05200 PF06039 Malate:quinone oxidoreductase (Mqo) BV884_05205 PF00732 GMC oxidoreductase BV884_05205 PF05199 GMC oxidoreductase BV884_05210 PF00171 Aldehyde dehydrogenase family BV884_05215 PF13977 BetI-type transcriptional repressor, C-terminal BV884_05215 PF00440 Bacterial regulatory proteins, tetR family BV884_05220 PF02028 BCCT, betaine/carnitine/choline family transporter BV884_05225 PF02028 BCCT, betaine/carnitine/choline family transporter BV884_05235 PF03061 Thioesterase superfamily BV884_05245 PF02492 CobW/HypB/UreG, nucleotide-binding domain BV884_05245 PF07683 Cobalamin synthesis protein cobW C-terminal domain BV884_05250 PF00375 Sodium:dicarboxylate symporter family BV884_05255 PF07152 YaeQ protein BV884_05260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BV884_05265 PF01522 Polysaccharide deacetylase BV884_05265 PF14883 Hypothetical glycosyl hydrolase family 13 BV884_05270 PF00535 Glycosyl transferase family 2 BV884_05280 PF00378 Enoyl-CoA hydratase/isomerase BV884_05295 PF01614 Bacterial transcriptional regulator BV884_05295 PF09339 IclR helix-turn-helix domain BV884_05300 PF00355 Rieske [2Fe-2S] domain BV884_05310 PF00355 Rieske [2Fe-2S] domain BV884_05320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BV884_05325 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_05325 PF14759 Reductase C-terminal BV884_05330 PF07690 Major Facilitator Superfamily BV884_05340 PF12697 Alpha/beta hydrolase family BV884_05350 PF03447 Homoserine dehydrogenase, NAD binding domain BV884_05350 PF01958 Domain of unknown function DUF108 BV884_05355 PF00171 Aldehyde dehydrogenase family BV884_05360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BV884_05360 PF00205 Thiamine pyrophosphate enzyme, central domain BV884_05360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BV884_05370 PF07690 Major Facilitator Superfamily BV884_05375 PF01327 Polypeptide deformylase BV884_05380 PF04960 Glutaminase BV884_05385 PF12833 Helix-turn-helix domain BV884_05385 PF02311 AraC-like ligand binding domain BV884_05390 PF07690 Major Facilitator Superfamily BV884_05395 PF01263 Aldose 1-epimerase BV884_05410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_05410 PF03466 LysR substrate binding domain BV884_05420 PF07690 Major Facilitator Superfamily BV884_05425 PF00456 Transketolase, thiamine diphosphate binding domain BV884_05430 PF02779 Transketolase, pyrimidine binding domain BV884_05430 PF02780 Transketolase, C-terminal domain BV884_05435 PF02574 Homocysteine S-methyltransferase BV884_05435 PF02965 Vitamin B12 dependent methionine synthase, activation domain BV884_05435 PF00809 Pterin binding enzyme BV884_05435 PF02607 B12 binding domain BV884_05435 PF02310 B12 binding domain BV884_05440 PF01384 Phosphate transporter family BV884_05445 PF00291 Pyridoxal-phosphate dependent enzyme BV884_05455 PF03781 Sulfatase-modifying factor enzyme 1 BV884_05460 PF00884 Sulfatase BV884_05470 PF01521 Iron-sulphur cluster biosynthesis BV884_05470 PF01106 NifU-like domain BV884_05475 PF07715 TonB-dependent Receptor Plug Domain BV884_05475 PF00593 TonB dependent receptor BV884_05485 PF00561 alpha/beta hydrolase fold BV884_05490 PF00484 Carbonic anhydrase BV884_05495 PF13472 GDSL-like Lipase/Acylhydrolase family BV884_05500 PF00005 ABC transporter BV884_05510 PF01694 Rhomboid family BV884_05515 PF00912 Transglycosylase BV884_05520 PF13090 Polyphosphate kinase C-terminal domain 2 BV884_05520 PF02503 Polyphosphate kinase middle domain BV884_05520 PF13089 Polyphosphate kinase N-terminal domain BV884_05520 PF17941 Polyphosphate kinase C-terminal domain 1 BV884_05530 PF03466 LysR substrate binding domain BV884_05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_05535 PF00561 alpha/beta hydrolase fold BV884_05540 PF18113 Rubredoxin binding C-terminal domain BV884_05540 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_05545 PF00301 Rubredoxin BV884_05560 PF01336 OB-fold nucleic acid binding domain BV884_05560 PF00152 tRNA synthetases class II (D, K and N) BV884_05565 PF14052 Capsule assembly protein Wzi BV884_05585 PF01507 Phosphoadenosine phosphosulfate reductase family BV884_05590 PF00009 Elongation factor Tu GTP binding domain BV884_05605 PF03600 Citrate transporter BV884_05615 PF03471 Transporter associated domain BV884_05615 PF01595 Cyclin M transmembrane N-terminal domain BV884_05615 PF00571 CBS domain BV884_05620 PF03466 LysR substrate binding domain BV884_05620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_05625 PF00463 Isocitrate lyase family BV884_05640 PF01774 UreD urease accessory protein BV884_05645 PF00547 Urease, gamma subunit BV884_05650 PF00699 Urease beta subunit BV884_05655 PF01979 Amidohydrolase family BV884_05655 PF00449 Urease alpha-subunit, N-terminal domain BV884_05660 PF00449 Urease alpha-subunit, N-terminal domain BV884_05660 PF01979 Amidohydrolase family BV884_05665 PF02814 UreE urease accessory protein, N-terminal domain BV884_05665 PF05194 UreE urease accessory protein, C-terminal domain BV884_05670 PF01730 UreF BV884_05675 PF02492 CobW/HypB/UreG, nucleotide-binding domain BV884_05690 PF03717 Penicillin-binding Protein dimerisation domain BV884_05690 PF00905 Penicillin binding protein transpeptidase domain BV884_05705 PF05191 Adenylate kinase, active site lid BV884_05710 PF00730 HhH-GPD superfamily base excision DNA repair protein BV884_05710 PF00633 Helix-hairpin-helix motif BV884_05710 PF10576 Iron-sulfur binding domain of endonuclease III BV884_05715 PF04060 Putative Fe-S cluster BV884_05720 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BV884_05720 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BV884_05730 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BV884_05735 PF02590 Predicted SPOUT methyltransferase BV884_05740 PF05362 Lon protease (S16) C-terminal proteolytic domain BV884_05740 PF00004 ATPase family associated with various cellular activities (AAA) BV884_05740 PF02190 ATP-dependent protease La (LON) substrate-binding domain BV884_05745 PF03895 YadA-like membrane anchor domain BV884_05745 PF05662 Coiled stalk of trimeric autotransporter adhesin BV884_05745 PF13018 Extended Signal Peptide of Type V secretion system BV884_05745 PF05658 Head domain of trimeric autotransporter adhesin BV884_05755 PF01812 5-formyltetrahydrofolate cyclo-ligase family BV884_06090 PF01551 Peptidase family M23 BV884_06090 PF08525 Opacity-associated protein A N-terminal motif BV884_06090 PF01476 LysM domain BV884_06135 PF00884 Sulfatase BV884_06135 PF08019 Phosphoethanolamine transferase EptA/EptB BV884_06170 PF05195 Aminopeptidase P, N-terminal domain BV884_06170 PF00557 Metallopeptidase family M24 BV884_06175 PF01494 FAD binding domain BV884_06180 PF01494 FAD binding domain BV884_06190 PF13411 MerR HTH family regulatory protein BV884_06200 PF01810 LysE type translocator BV884_06205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_06205 PF03466 LysR substrate binding domain BV884_06215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BV884_06220 PF02021 Uncharacterised protein family UPF0102 BV884_06225 PF04972 BON domain BV884_06235 PF00293 NUDIX domain BV884_06235 PF09297 NADH pyrophosphatase zinc ribbon domain BV884_06245 PF00929 Exonuclease BV884_06250 PF01464 Transglycosylase SLT domain BV884_06250 PF01476 LysM domain BV884_06250 PF01476 LysM domain BV884_06250 PF01464 Transglycosylase SLT domain BV884_06255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BV884_06260 PF00528 Binding-protein-dependent transport system inner membrane component BV884_06265 PF12911 N-terminal TM domain of oligopeptide transport permease C BV884_06265 PF00528 Binding-protein-dependent transport system inner membrane component BV884_06270 PF00005 ABC transporter BV884_06270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BV884_06275 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_06275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BV884_06280 PF00593 TonB dependent receptor BV884_06280 PF07715 TonB-dependent Receptor Plug Domain BV884_06290 PF00929 Exonuclease BV884_06295 PF01979 Amidohydrolase family BV884_06300 PF00990 Diguanylate cyclase, GGDEF domain BV884_06300 PF00360 Phytochrome region BV884_06300 PF01590 GAF domain BV884_06300 PF00563 EAL domain BV884_06305 PF00764 Arginosuccinate synthase BV884_06310 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_06310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BV884_06325 PF13610 DDE domain BV884_06335 PF02796 Helix-turn-helix domain of resolvase BV884_06335 PF00239 Resolvase, N terminal domain BV884_06350 PF13610 DDE domain BV884_06355 PF13700 Domain of unknown function (DUF4158) BV884_06355 PF01526 Tn3 transposase DDE domain BV884_06360 PF00239 Resolvase, N terminal domain BV884_06360 PF02796 Helix-turn-helix domain of resolvase BV884_06365 PF13610 DDE domain BV884_06380 PF01636 Phosphotransferase enzyme family BV884_06385 PF13610 DDE domain BV884_06395 PF00440 Bacterial regulatory proteins, tetR family BV884_06395 PF17932 Tetracyclin repressor-like, C-terminal domain BV884_06400 PF02678 Pirin BV884_06400 PF17954 Quercetinase C-terminal cupin domain BV884_06410 PF00106 short chain dehydrogenase BV884_06415 PF00743 Flavin-binding monooxygenase-like BV884_06425 PF00860 Permease family BV884_06430 PF00962 Adenosine/AMP deaminase BV884_06435 PF01292 Prokaryotic cytochrome b561 BV884_06445 PF01351 Ribonuclease HII BV884_06450 PF02599 Global regulator protein family BV884_06455 PF13840 ACT domain BV884_06455 PF01842 ACT domain BV884_06455 PF00696 Amino acid kinase family BV884_06460 PF01411 tRNA synthetases class II (A) BV884_06460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BV884_06460 PF02272 DHHA1 domain BV884_06465 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BV884_06465 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BV884_06470 PF13393 Histidyl-tRNA synthetase BV884_06475 PF00709 Adenylosuccinate synthetase BV884_06490 PF00248 Aldo/keto reductase family BV884_06510 PF00027 Cyclic nucleotide-binding domain BV884_06510 PF13545 Crp-like helix-turn-helix domain BV884_06515 PF02566 OsmC-like protein BV884_06530 PF00004 ATPase family associated with various cellular activities (AAA) BV884_06530 PF07724 AAA domain (Cdc48 subfamily) BV884_06530 PF17871 AAA lid domain BV884_06530 PF02861 Clp amino terminal domain, pathogenicity island component BV884_06530 PF10431 C-terminal, D2-small domain, of ClpB protein BV884_06545 PF02926 THUMP domain BV884_06545 PF10672 S-adenosylmethionine-dependent methyltransferase BV884_06545 PF01170 Putative RNA methylase family UPF0020 BV884_06555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BV884_06555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BV884_06560 PF01979 Amidohydrolase family BV884_06565 PF00691 OmpA family BV884_06565 PF13488 Glycine zipper BV884_06575 PF13417 Glutathione S-transferase, N-terminal domain BV884_06575 PF00043 Glutathione S-transferase, C-terminal domain BV884_06580 PF02390 Putative methyltransferase BV884_06590 PF02798 Glutathione S-transferase, N-terminal domain BV884_06590 PF00043 Glutathione S-transferase, C-terminal domain BV884_06600 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_06600 PF13192 Thioredoxin domain BV884_06620 PF00578 AhpC/TSA family BV884_06620 PF10417 C-terminal domain of 1-Cys peroxiredoxin BV884_06625 PF00271 Helicase conserved C-terminal domain BV884_06625 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BV884_06625 PF04408 Helicase associated domain (HA2) BV884_06625 PF11898 Domain of unknown function (DUF3418) BV884_06625 PF00270 DEAD/DEAH box helicase BV884_06630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BV884_06630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BV884_06640 PF07690 Major Facilitator Superfamily BV884_06645 PF03594 Benzoate membrane transport protein BV884_06650 PF00106 short chain dehydrogenase BV884_06655 PF00970 Oxidoreductase FAD-binding domain BV884_06655 PF00111 2Fe-2S iron-sulfur cluster binding domain BV884_06655 PF00175 Oxidoreductase NAD-binding domain BV884_06660 PF00866 Ring hydroxylating beta subunit BV884_06665 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BV884_06665 PF00355 Rieske [2Fe-2S] domain BV884_06670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_06670 PF03466 LysR substrate binding domain BV884_06680 PF00403 Heavy-metal-associated domain BV884_06685 PF00376 MerR family regulatory protein BV884_06685 PF09278 MerR, DNA binding BV884_06725 PF02601 Exonuclease VII, large subunit BV884_06725 PF13742 OB-fold nucleic acid binding domain BV884_06760 PF01810 LysE type translocator BV884_06765 PF00313 'Cold-shock' DNA-binding domain BV884_06775 PF14748 Pyrroline-5-carboxylate reductase dimerisation BV884_06775 PF03807 NADP oxidoreductase coenzyme F420-dependent BV884_06800 PF07690 Major Facilitator Superfamily BV884_06805 PF01638 HxlR-like helix-turn-helix BV884_06835 PF01406 tRNA synthetases class I (C) catalytic domain BV884_06835 PF09190 DALR domain BV884_06840 PF00571 CBS domain BV884_06840 PF01380 SIS domain BV884_06855 PF03968 OstA-like protein BV884_06860 PF00005 ABC transporter BV884_06860 PF12399 Branched-chain amino acid ATP-binding cassette transporter BV884_06865 PF02321 Outer membrane efflux protein BV884_06870 PF03412 Peptidase C39 family BV884_06870 PF00005 ABC transporter BV884_06870 PF00664 ABC transporter transmembrane region BV884_06880 PF01205 Uncharacterized protein family UPF0029 BV884_06885 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_06895 PF01596 O-methyltransferase BV884_06905 PF00037 4Fe-4S binding domain BV884_06905 PF11953 Domain of unknown function (DUF3470) BV884_06915 PF00488 MutS domain V BV884_06915 PF05192 MutS domain III BV884_06915 PF05188 MutS domain II BV884_06915 PF01624 MutS domain I BV884_06915 PF05190 MutS family domain IV BV884_06920 PF01037 Lrp/AsnC ligand binding domain BV884_06925 PF00892 EamA-like transporter family BV884_06930 PF00990 Diguanylate cyclase, GGDEF domain BV884_06930 PF03707 Bacterial signalling protein N terminal repeat BV884_06930 PF00563 EAL domain BV884_06935 PF03279 Bacterial lipid A biosynthesis acyltransferase BV884_06950 PF07690 Major Facilitator Superfamily BV884_06970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BV884_06970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BV884_06990 PF13419 Haloacid dehalogenase-like hydrolase BV884_07005 PF04717 Type VI secretion system, phage-baseplate injector BV884_07005 PF16671 Actin cross-linking domain BV884_07010 PF03527 RHS protein BV884_07010 PF14220 Domain of unknown function (DUF4329) BV884_07010 PF05593 RHS Repeat BV884_07025 PF03466 LysR substrate binding domain BV884_07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_07030 PF01566 Natural resistance-associated macrophage protein BV884_07035 PF03746 LamB/YcsF family BV884_07040 PF07286 Protein of unknown function (DUF1445) BV884_07050 PF00364 Biotin-requiring enzyme BV884_07050 PF00289 Biotin carboxylase, N-terminal domain BV884_07050 PF02785 Biotin carboxylase C-terminal domain BV884_07050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BV884_07055 PF00654 Voltage gated chloride channel BV884_07085 PF00440 Bacterial regulatory proteins, tetR family BV884_07105 PF08240 Alcohol dehydrogenase GroES-like domain BV884_07105 PF13823 Alcohol dehydrogenase GroES-associated BV884_07105 PF00107 Zinc-binding dehydrogenase BV884_07120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BV884_07120 PF02785 Biotin carboxylase C-terminal domain BV884_07120 PF00289 Biotin carboxylase, N-terminal domain BV884_07125 PF02525 Flavodoxin-like fold BV884_07130 PF01638 HxlR-like helix-turn-helix BV884_07145 PF08753 NikR C terminal nickel binding domain BV884_07145 PF01402 Ribbon-helix-helix protein, copG family BV884_07150 PF01425 Amidase BV884_07155 PF00497 Bacterial extracellular solute-binding proteins, family 3 BV884_07160 PF00005 ABC transporter BV884_07230 PF01389 OmpA-like transmembrane domain BV884_07230 PF00691 OmpA family BV884_07240 PF07724 AAA domain (Cdc48 subfamily) BV884_07240 PF17871 AAA lid domain BV884_07240 PF10431 C-terminal, D2-small domain, of ClpB protein BV884_07240 PF00004 ATPase family associated with various cellular activities (AAA) BV884_07270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_07270 PF03466 LysR substrate binding domain BV884_07280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BV884_07285 PF07690 Major Facilitator Superfamily BV884_07300 PF02677 Epoxyqueuosine reductase QueH BV884_07325 PF09278 MerR, DNA binding BV884_07325 PF00376 MerR family regulatory protein BV884_07340 PF00701 Dihydrodipicolinate synthetase family BV884_07350 PF00392 Bacterial regulatory proteins, gntR family BV884_07355 PF05544 Proline racemase BV884_07360 PF01266 FAD dependent oxidoreductase BV884_07370 PF04324 BFD-like [2Fe-2S] binding domain BV884_07370 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_07380 PF00083 Sugar (and other) transporter BV884_07385 PF00171 Aldehyde dehydrogenase family BV884_07390 PF13520 Amino acid permease BV884_07395 PF03315 Serine dehydratase beta chain BV884_07395 PF03313 Serine dehydratase alpha chain BV884_07400 PF00171 Aldehyde dehydrogenase family BV884_07400 PF01575 MaoC like domain BV884_07405 PF05138 Phenylacetic acid catabolic protein BV884_07410 PF06243 Phenylacetic acid degradation B BV884_07415 PF05138 Phenylacetic acid catabolic protein BV884_07420 PF01883 Iron-sulfur cluster assembly protein BV884_07425 PF00175 Oxidoreductase NAD-binding domain BV884_07425 PF00111 2Fe-2S iron-sulfur cluster binding domain BV884_07425 PF00970 Oxidoreductase FAD-binding domain BV884_07430 PF00378 Enoyl-CoA hydratase/isomerase BV884_07435 PF00378 Enoyl-CoA hydratase/isomerase BV884_07440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BV884_07440 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BV884_07440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BV884_07445 PF00108 Thiolase, N-terminal domain BV884_07445 PF02803 Thiolase, C-terminal domain BV884_07450 PF00501 AMP-binding enzyme BV884_07450 PF14535 AMP-binding enzyme C-terminal domain BV884_07455 PF07848 PaaX-like protein BV884_07455 PF08223 PaaX-like protein C-terminal domain BV884_07460 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_07465 PF03061 Thioesterase superfamily BV884_07505 PF00199 Catalase BV884_07510 PF01292 Prokaryotic cytochrome b561 BV884_07530 PF12697 Alpha/beta hydrolase family BV884_07535 PF01613 Flavin reductase like domain BV884_07540 PF00296 Luciferase-like monooxygenase BV884_07545 PF00171 Aldehyde dehydrogenase family BV884_07550 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BV884_07560 PF00171 Aldehyde dehydrogenase family BV884_07565 PF02627 Carboxymuconolactone decarboxylase family BV884_07570 PF03466 LysR substrate binding domain BV884_07570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_07575 PF02525 Flavodoxin-like fold BV884_07580 PF09339 IclR helix-turn-helix domain BV884_07580 PF01614 Bacterial transcriptional regulator BV884_07585 PF01494 FAD binding domain BV884_07590 PF07702 UTRA domain BV884_07590 PF00392 Bacterial regulatory proteins, gntR family BV884_07600 PF08402 TOBE domain BV884_07600 PF00005 ABC transporter BV884_07605 PF00528 Binding-protein-dependent transport system inner membrane component BV884_07610 PF01266 FAD dependent oxidoreductase BV884_07615 PF00266 Aminotransferase class-V BV884_07620 PF13419 Haloacid dehalogenase-like hydrolase BV884_07625 PF07690 Major Facilitator Superfamily BV884_07630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_07630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_07630 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_07635 PF02515 CoA-transferase family III BV884_07640 PF09339 IclR helix-turn-helix domain BV884_07645 PF00378 Enoyl-CoA hydratase/isomerase BV884_07650 PF03060 Nitronate monooxygenase BV884_07655 PF07690 Major Facilitator Superfamily BV884_07660 PF09339 IclR helix-turn-helix domain BV884_07665 PF00108 Thiolase, N-terminal domain BV884_07665 PF02803 Thiolase, C-terminal domain BV884_07670 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BV884_07670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BV884_07670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BV884_07680 PF00378 Enoyl-CoA hydratase/isomerase BV884_07685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_07685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_07685 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_07690 PF07690 Major Facilitator Superfamily BV884_07695 PF01144 Coenzyme A transferase BV884_07700 PF01144 Coenzyme A transferase BV884_07710 PF07690 Major Facilitator Superfamily BV884_07720 PF12806 Acetyl-CoA dehydrogenase C-terminal like BV884_07720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_07720 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_07720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_07735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_07735 PF03466 LysR substrate binding domain BV884_07740 PF00682 HMGL-like BV884_07745 PF00364 Biotin-requiring enzyme BV884_07745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BV884_07745 PF00289 Biotin carboxylase, N-terminal domain BV884_07745 PF02785 Biotin carboxylase C-terminal domain BV884_07750 PF00378 Enoyl-CoA hydratase/isomerase BV884_07755 PF01039 Carboxyl transferase domain BV884_07760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_07760 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_07760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_07765 PF00440 Bacterial regulatory proteins, tetR family BV884_07770 PF00501 AMP-binding enzyme BV884_07770 PF13193 AMP-binding enzyme C-terminal domain BV884_07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_07790 PF03466 LysR substrate binding domain BV884_07820 PF02464 Competence-damaged protein BV884_07820 PF18146 Damage-inducible protein CinA KH domain BV884_07820 PF00994 Probable molybdopterin binding domain BV884_07830 PF00199 Catalase BV884_07830 PF18011 C-terminal domain found in long catalases BV884_07830 PF06628 Catalase-related immune-responsive BV884_07855 PF00717 Peptidase S24-like BV884_07865 PF13404 AsnC-type helix-turn-helix domain BV884_07865 PF01037 Lrp/AsnC ligand binding domain BV884_07875 PF00512 His Kinase A (phospho-acceptor) domain BV884_07875 PF00072 Response regulator receiver domain BV884_07875 PF09308 LuxQ, periplasmic BV884_07875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_07880 PF00072 Response regulator receiver domain BV884_07890 PF00528 Binding-protein-dependent transport system inner membrane component BV884_07895 PF00528 Binding-protein-dependent transport system inner membrane component BV884_07900 PF00005 ABC transporter BV884_07905 PF00497 Bacterial extracellular solute-binding proteins, family 3 BV884_07910 PF00497 Bacterial extracellular solute-binding proteins, family 3 BV884_07915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_07915 PF03466 LysR substrate binding domain BV884_07920 PF01810 LysE type translocator BV884_07925 PF00266 Aminotransferase class-V BV884_07935 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_07940 PF00581 Rhodanese-like domain BV884_07950 PF03466 LysR substrate binding domain BV884_07950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_07955 PF02798 Glutathione S-transferase, N-terminal domain BV884_07960 PF02798 Glutathione S-transferase, N-terminal domain BV884_07960 PF14834 Glutathione S-transferase, C-terminal domain BV884_07965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_07965 PF03466 LysR substrate binding domain BV884_07970 PF03788 LrgA family BV884_07975 PF04172 LrgB-like family BV884_07980 PF00392 Bacterial regulatory proteins, gntR family BV884_07980 PF00155 Aminotransferase class I and II BV884_07995 PF07690 Major Facilitator Superfamily BV884_08000 PF16957 Malonate decarboxylase, alpha subunit, transporter BV884_08005 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BV884_08010 PF06857 Malonate decarboxylase delta subunit (MdcD) BV884_08015 PF01039 Carboxyl transferase domain BV884_08025 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BV884_08030 PF00698 Acyl transferase domain BV884_08045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_08045 PF03466 LysR substrate binding domain BV884_08050 PF00155 Aminotransferase class I and II BV884_08050 PF00392 Bacterial regulatory proteins, gntR family BV884_08055 PF02322 Cytochrome bd terminal oxidase subunit II BV884_08060 PF01654 Cytochrome bd terminal oxidase subunit I BV884_08075 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_08075 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BV884_08075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_08080 PF00296 Luciferase-like monooxygenase BV884_08085 PF00083 Sugar (and other) transporter BV884_08095 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BV884_08100 PF00005 ABC transporter BV884_08105 PF00528 Binding-protein-dependent transport system inner membrane component BV884_08110 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BV884_08115 PF01177 Asp/Glu/Hydantoin racemase BV884_08120 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BV884_08130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_08130 PF03466 LysR substrate binding domain BV884_08140 PF13382 Adenine deaminase C-terminal domain BV884_08140 PF01979 Amidohydrolase family BV884_08150 PF03960 ArsC family BV884_08155 PF01022 Bacterial regulatory protein, arsR family BV884_08160 PF01758 Sodium Bile acid symporter family BV884_08165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_08165 PF03466 LysR substrate binding domain BV884_08180 PF13192 Thioredoxin domain BV884_08180 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_08195 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_08200 PF00588 SpoU rRNA Methylase family BV884_08205 PF02811 PHP domain BV884_08205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BV884_08205 PF07733 Bacterial DNA polymerase III alpha NTPase domain BV884_08205 PF14579 Helix-hairpin-helix motif BV884_08205 PF01336 OB-fold nucleic acid binding domain BV884_08210 PF00710 Asparaginase, N-terminal BV884_08210 PF17763 Glutaminase/Asparaginase C-terminal domain BV884_08215 PF00375 Sodium:dicarboxylate symporter family BV884_08220 PF00155 Aminotransferase class I and II BV884_08225 PF01641 SelR domain BV884_08230 PF00255 Glutathione peroxidase BV884_08235 PF12833 Helix-turn-helix domain BV884_08235 PF12852 Cupin BV884_08245 PF00155 Aminotransferase class I and II BV884_08250 PF08335 GlnD PII-uridylyltransferase BV884_08250 PF01909 Nucleotidyltransferase domain BV884_08250 PF01966 HD domain BV884_08255 PF02222 ATP-grasp domain BV884_08265 PF05437 Branched-chain amino acid transport protein (AzlD) BV884_08270 PF03591 AzlC protein BV884_08295 PF06071 Protein of unknown function (DUF933) BV884_08295 PF01926 50S ribosome-binding GTPase BV884_08300 PF00528 Binding-protein-dependent transport system inner membrane component BV884_08305 PF00005 ABC transporter BV884_08305 PF09383 NIL domain BV884_08310 PF03180 NLPA lipoprotein BV884_08315 PF03180 NLPA lipoprotein BV884_08320 PF00296 Luciferase-like monooxygenase BV884_08330 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BV884_08330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_08345 PF00528 Binding-protein-dependent transport system inner membrane component BV884_08350 PF00528 Binding-protein-dependent transport system inner membrane component BV884_08355 PF00005 ABC transporter BV884_08365 PF01037 Lrp/AsnC ligand binding domain BV884_08370 PF01709 Transcriptional regulator BV884_08380 PF00440 Bacterial regulatory proteins, tetR family BV884_08400 PF03466 LysR substrate binding domain BV884_08400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_08410 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BV884_08420 PF00892 EamA-like transporter family BV884_08445 PF13954 PapC N-terminal domain BV884_08445 PF00577 Outer membrane usher protein BV884_08445 PF13953 PapC C-terminal domain BV884_08450 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BV884_08450 PF02753 Pili assembly chaperone PapD, C-terminal domain BV884_08455 PF16970 Type-1 fimbrial protein, A BV884_08470 PF06968 Biotin and Thiamin Synthesis associated domain BV884_08470 PF04055 Radical SAM superfamily BV884_08475 PF08331 Domain of unknown function (DUF1730) BV884_08480 PF01256 Carbohydrate kinase BV884_08480 PF03853 YjeF-related protein N-terminus BV884_08485 PF02075 Crossover junction endodeoxyribonuclease RuvC BV884_08500 PF00905 Penicillin binding protein transpeptidase domain BV884_08520 PF02772 S-adenosylmethionine synthetase, central domain BV884_08520 PF00438 S-adenosylmethionine synthetase, N-terminal domain BV884_08520 PF02773 S-adenosylmethionine synthetase, C-terminal domain BV884_08525 PF00456 Transketolase, thiamine diphosphate binding domain BV884_08525 PF02780 Transketolase, C-terminal domain BV884_08525 PF02779 Transketolase, pyrimidine binding domain BV884_08535 PF04264 YceI-like domain BV884_08545 PF09992 Phosphodiester glycosidase BV884_08555 PF05958 tRNA (Uracil-5-)-methyltransferase BV884_08560 PF04229 GrpB protein BV884_08565 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BV884_08565 PF14850 DNA-binding domain of Proline dehydrogenase BV884_08565 PF00171 Aldehyde dehydrogenase family BV884_08565 PF01619 Proline dehydrogenase BV884_08570 PF01037 Lrp/AsnC ligand binding domain BV884_08575 PF00474 Sodium:solute symporter family BV884_08580 PF02146 Sir2 family BV884_08585 PF01597 Glycine cleavage H-protein BV884_08590 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BV884_08590 PF12833 Helix-turn-helix domain BV884_08600 PF00005 ABC transporter BV884_08600 PF00664 ABC transporter transmembrane region BV884_08605 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BV884_08610 PF06912 Protein of unknown function (DUF1275) BV884_08615 PF00375 Sodium:dicarboxylate symporter family BV884_08645 PF08007 Cupin superfamily protein BV884_08650 PF02545 Maf-like protein BV884_08660 PF00162 Phosphoglycerate kinase BV884_08670 PF01116 Fructose-bisphosphate aldolase class-II BV884_08675 PF00639 PPIC-type PPIASE domain BV884_08675 PF09312 SurA N-terminal domain BV884_08680 PF03968 OstA-like protein BV884_08680 PF04453 LPS transport system D BV884_08685 PF01636 Phosphotransferase enzyme family BV884_08690 PF00483 Nucleotidyl transferase BV884_08695 PF02527 rRNA small subunit methyltransferase G BV884_08700 PF13614 AAA domain BV884_08705 PF02195 ParB-like nuclease domain BV884_08705 PF17762 HTH domain found in ParB protein BV884_08710 PF01618 MotA/TolQ/ExbB proton channel family BV884_08720 PF00005 ABC transporter BV884_08720 PF00664 ABC transporter transmembrane region BV884_08725 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BV884_08730 PF02348 Cytidylyltransferase BV884_08735 PF09115 DNA polymerase III, delta subunit, C terminal BV884_08745 PF01026 TatD related DNase BV884_08760 PF02501 Type II secretion system (T2SS), protein I BV884_08760 PF07963 Prokaryotic N-terminal methylation motif BV884_08765 PF11612 Type II secretion system (T2SS), protein J BV884_08765 PF07963 Prokaryotic N-terminal methylation motif BV884_08770 PF03934 Type II secretion system (T2SS), protein K BV884_08780 PF03167 Uracil DNA glycosylase superfamily BV884_08790 PF14437 MafB19-like deaminase BV884_08800 PF02224 Cytidylate kinase BV884_08805 PF00575 S1 RNA binding domain BV884_08810 PF00216 Bacterial DNA-binding protein BV884_08820 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BV884_08830 PF00743 Flavin-binding monooxygenase-like BV884_08840 PF03969 AFG1-like ATPase BV884_08845 PF01274 Malate synthase BV884_08855 PF02472 Biopolymer transport protein ExbD/TolR BV884_08860 PF02472 Biopolymer transport protein ExbD/TolR BV884_08865 PF01618 MotA/TolQ/ExbB proton channel family BV884_08875 PF07715 TonB-dependent Receptor Plug Domain BV884_08875 PF00593 TonB dependent receptor BV884_08890 PF01432 Peptidase family M3 BV884_08895 PF00528 Binding-protein-dependent transport system inner membrane component BV884_08900 PF00528 Binding-protein-dependent transport system inner membrane component BV884_08905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BV884_08905 PF00005 ABC transporter BV884_08920 PF00459 Inositol monophosphatase family BV884_08930 PF01649 Ribosomal protein S20 BV884_08935 PF13460 NAD(P)H-binding BV884_08940 PF03737 Aldolase/RraA BV884_08960 PF03461 TRCF domain BV884_08960 PF00271 Helicase conserved C-terminal domain BV884_08960 PF00270 DEAD/DEAH box helicase BV884_08960 PF17757 UvrB interaction domain BV884_08960 PF02559 CarD-like/TRCF domain BV884_08970 PF00211 Adenylate and Guanylate cyclase catalytic domain BV884_08975 PF00111 2Fe-2S iron-sulfur cluster binding domain BV884_08980 PF00012 Hsp70 protein BV884_08985 PF00226 DnaJ domain BV884_08985 PF07743 HSCB C-terminal oligomerisation domain BV884_08990 PF01521 Iron-sulphur cluster biosynthesis BV884_08995 PF01592 NifU-like N terminal domain BV884_09000 PF00266 Aminotransferase class-V BV884_09005 PF02082 Transcriptional regulator BV884_09020 PF00216 Bacterial DNA-binding protein BV884_09025 PF09312 SurA N-terminal domain BV884_09025 PF00639 PPIC-type PPIASE domain BV884_09030 PF12852 Cupin BV884_09030 PF12833 Helix-turn-helix domain BV884_09035 PF00487 Fatty acid desaturase BV884_09040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_09040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_09040 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_09045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_09045 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_09045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_09050 PF03109 ABC1 family BV884_09060 PF04073 Aminoacyl-tRNA editing domain BV884_09065 PF06276 Ferric iron reductase FhuF-like transporter BV884_09065 PF04183 IucA / IucC family BV884_09070 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BV884_09075 PF07690 Major Facilitator Superfamily BV884_09080 PF06276 Ferric iron reductase FhuF-like transporter BV884_09080 PF04183 IucA / IucC family BV884_09085 PF04183 IucA / IucC family BV884_09085 PF06276 Ferric iron reductase FhuF-like transporter BV884_09100 PF07715 TonB-dependent Receptor Plug Domain BV884_09100 PF00593 TonB dependent receptor BV884_09135 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BV884_09140 PF02277 Phosphoribosyltransferase BV884_09155 PF02654 Cobalamin-5-phosphate synthase BV884_09160 PF00793 DAHP synthetase I family BV884_09165 PF01925 Sulfite exporter TauE/SafE BV884_09185 PF07715 TonB-dependent Receptor Plug Domain BV884_09185 PF00593 TonB dependent receptor BV884_09190 PF02684 Lipid-A-disaccharide synthetase BV884_09200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BV884_09205 PF00005 ABC transporter BV884_09240 PF01230 HIT domain BV884_09270 PF08241 Methyltransferase domain BV884_09275 PF00561 alpha/beta hydrolase fold BV884_09280 PF01053 Cys/Met metabolism PLP-dependent enzyme BV884_09290 PF02575 YbaB/EbfC DNA-binding family BV884_09295 PF13662 Toprim domain BV884_09295 PF02132 RecR protein BV884_09300 PF00570 HRDC domain BV884_09300 PF01612 3'-5' exonuclease BV884_09315 PF05166 YcgL domain BV884_09325 PF00004 ATPase family associated with various cellular activities (AAA) BV884_09325 PF17862 AAA+ lid domain BV884_09325 PF01434 Peptidase family M41 BV884_09335 PF00291 Pyridoxal-phosphate dependent enzyme BV884_09340 PF05175 Methyltransferase small domain BV884_09345 PF01264 Chorismate synthase BV884_09365 PF04055 Radical SAM superfamily BV884_09370 PF00676 Dehydrogenase E1 component BV884_09375 PF02780 Transketolase, C-terminal domain BV884_09375 PF02779 Transketolase, pyrimidine binding domain BV884_09380 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BV884_09380 PF00364 Biotin-requiring enzyme BV884_09380 PF02817 e3 binding domain BV884_09385 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_09385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BV884_09390 PF00106 short chain dehydrogenase BV884_09395 PF08240 Alcohol dehydrogenase GroES-like domain BV884_09395 PF00107 Zinc-binding dehydrogenase BV884_09400 PF01062 Bestrophin, RFP-TM, chloride channel BV884_09405 PF00072 Response regulator receiver domain BV884_09405 PF00158 Sigma-54 interaction domain BV884_09405 PF02954 Bacterial regulatory protein, Fis family BV884_09410 PF00753 Metallo-beta-lactamase superfamily BV884_09410 PF04273 Putative phosphatase (DUF442) BV884_09415 PF00753 Metallo-beta-lactamase superfamily BV884_09415 PF04273 Putative phosphatase (DUF442) BV884_09420 PF01925 Sulfite exporter TauE/SafE BV884_09435 PF06445 GyrI-like small molecule binding domain BV884_09435 PF12833 Helix-turn-helix domain BV884_09440 PF01638 HxlR-like helix-turn-helix BV884_09445 PF02525 Flavodoxin-like fold BV884_09470 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BV884_09475 PF00528 Binding-protein-dependent transport system inner membrane component BV884_09480 PF00005 ABC transporter BV884_09495 PF00083 Sugar (and other) transporter BV884_09500 PF00593 TonB dependent receptor BV884_09500 PF07715 TonB-dependent Receptor Plug Domain BV884_09505 PF10415 Fumarase C C-terminus BV884_09505 PF00206 Lyase BV884_09520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_09520 PF03466 LysR substrate binding domain BV884_09525 PF03466 LysR substrate binding domain BV884_09525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_09530 PF00108 Thiolase, N-terminal domain BV884_09530 PF02803 Thiolase, C-terminal domain BV884_09535 PF02667 Short chain fatty acid transporter BV884_09540 PF01144 Coenzyme A transferase BV884_09545 PF01144 Coenzyme A transferase BV884_09550 PF03466 LysR substrate binding domain BV884_09550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_09585 PF12833 Helix-turn-helix domain BV884_09585 PF06719 AraC-type transcriptional regulator N-terminus BV884_09595 PF01738 Dienelactone hydrolase family BV884_09610 PF01613 Flavin reductase like domain BV884_09620 PF12833 Helix-turn-helix domain BV884_09620 PF14525 AraC-binding-like domain BV884_09625 PF00175 Oxidoreductase NAD-binding domain BV884_09625 PF00970 Oxidoreductase FAD-binding domain BV884_09625 PF00111 2Fe-2S iron-sulfur cluster binding domain BV884_09630 PF00866 Ring hydroxylating beta subunit BV884_09635 PF00355 Rieske [2Fe-2S] domain BV884_09635 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BV884_09640 PF03459 TOBE domain BV884_09640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_09650 PF00528 Binding-protein-dependent transport system inner membrane component BV884_09655 PF03459 TOBE domain BV884_09655 PF00005 ABC transporter BV884_09660 PF00106 short chain dehydrogenase BV884_09665 PF00550 Phosphopantetheine attachment site BV884_09665 PF00857 Isochorismatase family BV884_09675 PF00149 Calcineurin-like phosphoesterase BV884_09680 PF13090 Polyphosphate kinase C-terminal domain 2 BV884_09680 PF17941 Polyphosphate kinase C-terminal domain 1 BV884_09680 PF13089 Polyphosphate kinase N-terminal domain BV884_09680 PF02503 Polyphosphate kinase middle domain BV884_09685 PF08042 PqqA family BV884_09690 PF12706 Beta-lactamase superfamily domain BV884_09695 PF03070 TENA/THI-4/PQQC family BV884_09700 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BV884_09705 PF13186 Iron-sulfur cluster-binding domain BV884_09705 PF04055 Radical SAM superfamily BV884_09710 PF01244 Membrane dipeptidase (Peptidase family M19) BV884_09725 PF13091 PLD-like domain BV884_09740 PF00199 Catalase BV884_09750 PF08240 Alcohol dehydrogenase GroES-like domain BV884_09750 PF00107 Zinc-binding dehydrogenase BV884_09760 PF00419 Fimbrial protein BV884_09765 PF13954 PapC N-terminal domain BV884_09765 PF13953 PapC C-terminal domain BV884_09765 PF00577 Outer membrane usher protein BV884_09770 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BV884_09770 PF02753 Pili assembly chaperone PapD, C-terminal domain BV884_09790 PF16970 Type-1 fimbrial protein, A BV884_09810 PF01266 FAD dependent oxidoreductase BV884_09825 PF01593 Flavin containing amine oxidoreductase BV884_09830 PF00743 Flavin-binding monooxygenase-like BV884_09835 PF12146 Serine aminopeptidase, S33 BV884_09840 PF02321 Outer membrane efflux protein BV884_09845 PF00873 AcrB/AcrD/AcrF family BV884_09850 PF00529 HlyD membrane-fusion protein of T1SS BV884_09850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BV884_09855 PF00072 Response regulator receiver domain BV884_09855 PF00486 Transcriptional regulatory protein, C terminal BV884_09860 PF00512 His Kinase A (phospho-acceptor) domain BV884_09860 PF16527 Two-component sensor protein CpxA, periplasmic domain BV884_09860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_09860 PF00672 HAMP domain BV884_09870 PF02311 AraC-like ligand binding domain BV884_09870 PF12833 Helix-turn-helix domain BV884_09875 PF12146 Serine aminopeptidase, S33 BV884_09930 PF13291 ACT domain BV884_09930 PF04607 Region found in RelA / SpoT proteins BV884_09930 PF02824 TGS domain BV884_09940 PF01975 Survival protein SurE BV884_09965 PF07690 Major Facilitator Superfamily BV884_09970 PF13533 Biotin-lipoyl like BV884_09975 PF01425 Amidase BV884_09980 PF00196 Bacterial regulatory proteins, luxR family BV884_10055 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BV884_10060 PF14572 Phosphoribosyl synthetase-associated domain BV884_10060 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BV884_10080 PF00005 ABC transporter BV884_10095 PF08240 Alcohol dehydrogenase GroES-like domain BV884_10095 PF00107 Zinc-binding dehydrogenase BV884_10110 PF06719 AraC-type transcriptional regulator N-terminus BV884_10110 PF12833 Helix-turn-helix domain BV884_10115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BV884_10115 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BV884_10120 PF07690 Major Facilitator Superfamily BV884_10125 PF01370 NAD dependent epimerase/dehydratase family BV884_10130 PF03466 LysR substrate binding domain BV884_10130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_10140 PF00920 Dehydratase family BV884_10145 PF00171 Aldehyde dehydrogenase family BV884_10160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BV884_10160 PF00529 HlyD membrane-fusion protein of T1SS BV884_10180 PF03737 Aldolase/RraA BV884_10185 PF01842 ACT domain BV884_10185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BV884_10185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BV884_10190 PF07690 Major Facilitator Superfamily BV884_10210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_10210 PF03466 LysR substrate binding domain BV884_10220 PF08450 SMP-30/Gluconolactonase/LRE-like region BV884_10235 PF04909 Amidohydrolase BV884_10240 PF07690 Major Facilitator Superfamily BV884_10250 PF13332 Hemagglutinin repeat BV884_10250 PF13018 Extended Signal Peptide of Type V secretion system BV884_10250 PF05860 haemagglutination activity domain BV884_10250 PF04829 Pre-toxin domain with VENN motif BV884_10255 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BV884_10255 PF17287 POTRA domain BV884_10255 PF08479 POTRA domain, ShlB-type BV884_10270 PF07687 Peptidase dimerisation domain BV884_10270 PF01546 Peptidase family M20/M25/M40 BV884_10280 PF02254 TrkA-N domain BV884_10280 PF00999 Sodium/hydrogen exchanger family BV884_10285 PF07995 Glucose / Sorbosone dehydrogenase BV884_10290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_10290 PF03466 LysR substrate binding domain BV884_10295 PF00857 Isochorismatase family BV884_10305 PF00440 Bacterial regulatory proteins, tetR family BV884_10305 PF08359 YsiA-like protein, C-terminal region BV884_10310 PF12706 Beta-lactamase superfamily domain BV884_10320 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_10330 PF00376 MerR family regulatory protein BV884_10330 PF09278 MerR, DNA binding BV884_10335 PF01872 RibD C-terminal domain BV884_10340 PF00106 short chain dehydrogenase BV884_10345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BV884_10345 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_10350 PF01047 MarR family BV884_10355 PF07859 alpha/beta hydrolase fold BV884_10375 PF06628 Catalase-related immune-responsive BV884_10375 PF00199 Catalase BV884_10380 PF00561 alpha/beta hydrolase fold BV884_10390 PF00171 Aldehyde dehydrogenase family BV884_10395 PF00107 Zinc-binding dehydrogenase BV884_10395 PF08240 Alcohol dehydrogenase GroES-like domain BV884_10400 PF00474 Sodium:solute symporter family BV884_10405 PF04341 Protein of unknown function, DUF485 BV884_10410 PF00501 AMP-binding enzyme BV884_10410 PF13193 AMP-binding enzyme C-terminal domain BV884_10415 PF02954 Bacterial regulatory protein, Fis family BV884_10415 PF06506 Propionate catabolism activator BV884_10415 PF00158 Sigma-54 interaction domain BV884_10425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_10425 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_10425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_10445 PF00171 Aldehyde dehydrogenase family BV884_10455 PF07690 Major Facilitator Superfamily BV884_10460 PF00920 Dehydratase family BV884_10465 PF00392 Bacterial regulatory proteins, gntR family BV884_10465 PF07729 FCD domain BV884_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_10475 PF03466 LysR substrate binding domain BV884_10480 PF13378 Enolase C-terminal domain-like BV884_10480 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BV884_10485 PF02426 Muconolactone delta-isomerase BV884_10490 PF04444 Catechol dioxygenase N terminus BV884_10490 PF00775 Dioxygenase BV884_10495 PF01144 Coenzyme A transferase BV884_10500 PF01144 Coenzyme A transferase BV884_10505 PF00108 Thiolase, N-terminal domain BV884_10505 PF02803 Thiolase, C-terminal domain BV884_10510 PF12146 Serine aminopeptidase, S33 BV884_10515 PF01804 Penicillin amidase BV884_10520 PF00171 Aldehyde dehydrogenase family BV884_10530 PF02728 Copper amine oxidase, N3 domain BV884_10530 PF02727 Copper amine oxidase, N2 domain BV884_10530 PF01179 Copper amine oxidase, enzyme domain BV884_10530 PF07833 Copper amine oxidase N-terminal domain BV884_10535 PF02311 AraC-like ligand binding domain BV884_10535 PF12833 Helix-turn-helix domain BV884_10540 PF01613 Flavin reductase like domain BV884_10545 PF00111 2Fe-2S iron-sulfur cluster binding domain BV884_10545 PF00175 Oxidoreductase NAD-binding domain BV884_10560 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BV884_10560 PF00355 Rieske [2Fe-2S] domain BV884_10575 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BV884_10580 PF01425 Amidase BV884_10590 PF07690 Major Facilitator Superfamily BV884_10600 PF00106 short chain dehydrogenase BV884_10615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_10615 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_10615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_10620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_10620 PF03466 LysR substrate binding domain BV884_10625 PF01614 Bacterial transcriptional regulator BV884_10625 PF09339 IclR helix-turn-helix domain BV884_10630 PF00753 Metallo-beta-lactamase superfamily BV884_10640 PF04143 Sulphur transport BV884_10650 PF13360 PQQ-like domain BV884_10650 PF01011 PQQ enzyme repeat BV884_10655 PF04966 Carbohydrate-selective porin, OprB family BV884_10660 PF05048 Periplasmic copper-binding protein (NosD) BV884_10665 PF01487 Type I 3-dehydroquinase BV884_10670 PF00775 Dioxygenase BV884_10675 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BV884_10675 PF00775 Dioxygenase BV884_10680 PF02627 Carboxymuconolactone decarboxylase family BV884_10685 PF07690 Major Facilitator Superfamily BV884_10690 PF00561 alpha/beta hydrolase fold BV884_10695 PF00206 Lyase BV884_10695 PF10397 Adenylosuccinate lyase C-terminus BV884_10700 PF02803 Thiolase, C-terminal domain BV884_10700 PF00108 Thiolase, N-terminal domain BV884_10705 PF01144 Coenzyme A transferase BV884_10710 PF01144 Coenzyme A transferase BV884_10715 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BV884_10720 PF04977 Septum formation initiator BV884_10725 PF04239 Protein of unknown function (DUF421) BV884_10730 PF00113 Enolase, C-terminal TIM barrel domain BV884_10730 PF03952 Enolase, N-terminal domain BV884_10735 PF00793 DAHP synthetase I family BV884_10740 PF06418 CTP synthase N-terminus BV884_10740 PF00117 Glutamine amidotransferase class-I BV884_10770 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_10770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BV884_10785 PF00793 DAHP synthetase I family BV884_10790 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BV884_10795 PF10431 C-terminal, D2-small domain, of ClpB protein BV884_10795 PF02861 Clp amino terminal domain, pathogenicity island component BV884_10795 PF17871 AAA lid domain BV884_10795 PF07724 AAA domain (Cdc48 subfamily) BV884_10795 PF00004 ATPase family associated with various cellular activities (AAA) BV884_10800 PF02617 ATP-dependent Clp protease adaptor protein ClpS BV884_10810 PF02774 Semialdehyde dehydrogenase, dimerisation domain BV884_10810 PF01118 Semialdehyde dehydrogenase, NAD binding domain BV884_10825 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BV884_10830 PF00585 C-terminal regulatory domain of Threonine dehydratase BV884_10830 PF00291 Pyridoxal-phosphate dependent enzyme BV884_10835 PF02254 TrkA-N domain BV884_10835 PF02080 TrkA-C domain BV884_10840 PF02386 Cation transport protein BV884_10845 PF02253 Phospholipase A1 BV884_10850 PF05193 Peptidase M16 inactive domain BV884_10850 PF00675 Insulinase (Peptidase family M16) BV884_10850 PF08367 Peptidase M16C associated BV884_10855 PF00593 TonB dependent receptor BV884_10855 PF07715 TonB-dependent Receptor Plug Domain BV884_10860 PF00294 pfkB family carbohydrate kinase BV884_10870 PF07290 Protein of unknown function (DUF1449) BV884_10895 PF01654 Cytochrome bd terminal oxidase subunit I BV884_10900 PF02322 Cytochrome bd terminal oxidase subunit II BV884_10905 PF08173 Membrane bound YbgT-like protein BV884_10920 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BV884_10930 PF00448 SRP54-type protein, GTPase domain BV884_10930 PF02881 SRP54-type protein, helical bundle domain BV884_10960 PF00571 CBS domain BV884_10960 PF00478 IMP dehydrogenase / GMP reductase domain BV884_10965 PF00202 Aminotransferase class-III BV884_10970 PF00462 Glutaredoxin BV884_10980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_10980 PF03466 LysR substrate binding domain BV884_10985 PF00557 Metallopeptidase family M24 BV884_10990 PF05525 Branched-chain amino acid transport protein BV884_11015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BV884_11015 PF05524 PEP-utilising enzyme, N-terminal BV884_11015 PF00381 PTS HPr component phosphorylation site BV884_11015 PF00391 PEP-utilising enzyme, mobile domain BV884_11015 PF02896 PEP-utilising enzyme, TIM barrel domain BV884_11020 PF00294 pfkB family carbohydrate kinase BV884_11025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BV884_11025 PF02378 Phosphotransferase system, EIIC BV884_11045 PF00990 Diguanylate cyclase, GGDEF domain BV884_11045 PF00563 EAL domain BV884_11045 PF03707 Bacterial signalling protein N terminal repeat BV884_11055 PF07995 Glucose / Sorbosone dehydrogenase BV884_11060 PF02586 SOS response associated peptidase (SRAP) BV884_11065 PF01740 STAS domain BV884_11065 PF00916 Sulfate permease family BV884_11070 PF00082 Subtilase family BV884_11070 PF05922 Peptidase inhibitor I9 BV884_11080 PF00324 Amino acid permease BV884_11085 PF00266 Aminotransferase class-V BV884_11090 PF01037 Lrp/AsnC ligand binding domain BV884_11115 PF13419 Haloacid dehalogenase-like hydrolase BV884_11120 PF01479 S4 domain BV884_11125 PF00154 recA bacterial DNA recombination protein BV884_11130 PF02631 RecX family BV884_11145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BV884_11145 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_11150 PF07977 FabA-like domain BV884_11155 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_11155 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BV884_11165 PF01103 Surface antigen BV884_11165 PF07244 Surface antigen variable number repeat BV884_11170 PF02163 Peptidase family M50 BV884_11170 PF17820 PDZ domain BV884_11170 PF13180 PDZ domain BV884_11175 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BV884_11175 PF13288 DXP reductoisomerase C-terminal domain BV884_11175 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BV884_11185 PF01255 Putative undecaprenyl diphosphate synthase BV884_11190 PF01765 Ribosome recycling factor BV884_11195 PF00696 Amino acid kinase family BV884_11200 PF00919 Uncharacterized protein family UPF0004 BV884_11200 PF18693 TRAM domain BV884_11200 PF04055 Radical SAM superfamily BV884_11205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_11205 PF00512 His Kinase A (phospho-acceptor) domain BV884_11205 PF00989 PAS fold BV884_11210 PF02954 Bacterial regulatory protein, Fis family BV884_11210 PF00072 Response regulator receiver domain BV884_11210 PF00158 Sigma-54 interaction domain BV884_11215 PF00440 Bacterial regulatory proteins, tetR family BV884_11220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BV884_11220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BV884_11230 PF02542 YgbB family BV884_11240 PF01266 FAD dependent oxidoreductase BV884_11265 PF00206 Lyase BV884_11265 PF10415 Fumarase C C-terminus BV884_11270 PF16363 GDP-mannose 4,6 dehydratase BV884_11275 PF02635 DsrE/DsrF-like family BV884_11295 PF00892 EamA-like transporter family BV884_11300 PF00392 Bacterial regulatory proteins, gntR family BV884_11300 PF00155 Aminotransferase class I and II BV884_11305 PF01638 HxlR-like helix-turn-helix BV884_11310 PF03453 MoeA N-terminal region (domain I and II) BV884_11310 PF03454 MoeA C-terminal region (domain IV) BV884_11310 PF00994 Probable molybdopterin binding domain BV884_11315 PF00994 Probable molybdopterin binding domain BV884_11315 PF01967 MoaC family BV884_11320 PF02391 MoaE protein BV884_11330 PF06463 Molybdenum Cofactor Synthesis C BV884_11330 PF04055 Radical SAM superfamily BV884_11335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BV884_11335 PF01568 Molydopterin dinucleotide binding domain BV884_11335 PF00384 Molybdopterin oxidoreductase BV884_11340 PF12804 MobA-like NTP transferase domain BV884_11345 PF01568 Molydopterin dinucleotide binding domain BV884_11345 PF00384 Molybdopterin oxidoreductase BV884_11345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BV884_11345 PF04324 BFD-like [2Fe-2S] binding domain BV884_11350 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_11350 PF18267 Rubredoxin NAD+ reductase C-terminal domain BV884_11350 PF04324 BFD-like [2Fe-2S] binding domain BV884_11350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BV884_11350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BV884_11355 PF18267 Rubredoxin NAD+ reductase C-terminal domain BV884_11355 PF13806 Rieske-like [2Fe-2S] domain BV884_11355 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_11355 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BV884_11355 PF04324 BFD-like [2Fe-2S] binding domain BV884_11355 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BV884_11365 PF00486 Transcriptional regulatory protein, C terminal BV884_11365 PF00072 Response regulator receiver domain BV884_11380 PF01220 Dehydroquinase class II BV884_11385 PF00364 Biotin-requiring enzyme BV884_11390 PF00289 Biotin carboxylase, N-terminal domain BV884_11390 PF02785 Biotin carboxylase C-terminal domain BV884_11390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BV884_11400 PF12832 MFS_1 like family BV884_11410 PF00665 Integrase core domain BV884_11410 PF13276 HTH-like domain BV884_11410 PF13333 Integrase core domain BV884_11470 PF01551 Peptidase family M23 BV884_11470 PF08525 Opacity-associated protein A N-terminal motif BV884_11470 PF01476 LysM domain BV884_11660 PF01555 DNA methylase BV884_11690 PF02384 N-6 DNA Methylase BV884_11690 PF12161 HsdM N-terminal domain BV884_11770 PF01645 Conserved region in glutamate synthase BV884_11785 PF01565 FAD binding domain BV884_11785 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BV884_11790 PF01451 Low molecular weight phosphotyrosine protein phosphatase BV884_11800 PF00465 Iron-containing alcohol dehydrogenase BV884_11805 PF03061 Thioesterase superfamily BV884_11810 PF04185 Phosphoesterase family BV884_11810 PF05506 Domain of unknown function (DUF756) BV884_11815 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BV884_11815 PF12169 DNA polymerase III subunits gamma and tau domain III BV884_11815 PF12170 DNA polymerase III tau subunit V interacting with alpha BV884_11820 PF07690 Major Facilitator Superfamily BV884_11845 PF02803 Thiolase, C-terminal domain BV884_11845 PF00108 Thiolase, N-terminal domain BV884_11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_11855 PF03466 LysR substrate binding domain BV884_11865 PF01810 LysE type translocator BV884_11870 PF01037 Lrp/AsnC ligand binding domain BV884_11875 PF03594 Benzoate membrane transport protein BV884_11880 PF02308 MgtC family BV884_11885 PF00690 Cation transporter/ATPase, N-terminus BV884_11885 PF00689 Cation transporting ATPase, C-terminus BV884_11900 PF00582 Universal stress protein family BV884_11905 PF12848 ABC transporter BV884_11905 PF00005 ABC transporter BV884_11920 PF07715 TonB-dependent Receptor Plug Domain BV884_11920 PF00593 TonB dependent receptor BV884_11965 PF00924 Mechanosensitive ion channel BV884_11970 PF07715 TonB-dependent Receptor Plug Domain BV884_11970 PF00593 TonB dependent receptor BV884_11975 PF00440 Bacterial regulatory proteins, tetR family BV884_11995 PF01037 Lrp/AsnC ligand binding domain BV884_12000 PF01817 Chorismate mutase type II BV884_12035 PF01433 Peptidase family M1 domain BV884_12035 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BV884_12035 PF11940 Domain of unknown function (DUF3458) Ig-like fold BV884_12050 PF02110 Hydroxyethylthiazole kinase family BV884_12055 PF06445 GyrI-like small molecule binding domain BV884_12065 PF14493 Helix-turn-helix domain BV884_12065 PF05970 PIF1-like helicase BV884_12070 PF00465 Iron-containing alcohol dehydrogenase BV884_12085 PF00171 Aldehyde dehydrogenase family BV884_12090 PF13520 Amino acid permease BV884_12095 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BV884_12100 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BV884_12105 PF00958 GMP synthase C terminal domain BV884_12105 PF00117 Glutamine amidotransferase class-I BV884_12105 PF02540 NAD synthase BV884_12110 PF00749 tRNA synthetases class I (E and Q), catalytic domain BV884_12110 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BV884_12115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BV884_12120 PF00149 Calcineurin-like phosphoesterase BV884_12130 PF00881 Nitroreductase family BV884_12140 PF17209 Hfq protein BV884_12150 PF08676 MutL C terminal dimerisation domain BV884_12150 PF01119 DNA mismatch repair protein, C-terminal domain BV884_12155 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BV884_12160 PF01479 S4 domain BV884_12160 PF00849 RNA pseudouridylate synthase BV884_12175 PF01479 S4 domain BV884_12175 PF00849 RNA pseudouridylate synthase BV884_12185 PF04284 Protein of unknown function (DUF441) BV884_12190 PF03466 LysR substrate binding domain BV884_12190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_12205 PF07690 Major Facilitator Superfamily BV884_12210 PF00027 Cyclic nucleotide-binding domain BV884_12210 PF00520 Ion transport protein BV884_12220 PF11791 Aconitate B N-terminal domain BV884_12220 PF06434 Aconitate hydratase 2 N-terminus BV884_12220 PF00330 Aconitase family (aconitate hydratase) BV884_12240 PF07244 Surface antigen variable number repeat BV884_12240 PF17243 POTRA domain TamA domain 1 BV884_12240 PF01103 Surface antigen BV884_12245 PF07690 Major Facilitator Superfamily BV884_12250 PF03232 Ubiquinone biosynthesis protein COQ7 BV884_12260 PF00120 Glutamine synthetase, catalytic domain BV884_12265 PF00072 Response regulator receiver domain BV884_12265 PF00486 Transcriptional regulatory protein, C terminal BV884_12270 PF13493 Domain of unknown function (DUF4118) BV884_12270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_12270 PF00512 His Kinase A (phospho-acceptor) domain BV884_12270 PF02702 Osmosensitive K+ channel His kinase sensor domain BV884_12275 PF02669 K+-transporting ATPase, c chain BV884_12285 PF03814 Potassium-transporting ATPase A subunit BV884_12300 PF03109 ABC1 family BV884_12305 PF00899 ThiF family BV884_12310 PF01613 Flavin reductase like domain BV884_12315 PF13193 AMP-binding enzyme C-terminal domain BV884_12315 PF00501 AMP-binding enzyme BV884_12320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_12320 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_12320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_12325 PF00106 short chain dehydrogenase BV884_12330 PF12833 Helix-turn-helix domain BV884_12335 PF09084 NMT1/THI5 like BV884_12340 PF00528 Binding-protein-dependent transport system inner membrane component BV884_12345 PF17827 PrmC N-terminal domain BV884_12345 PF13847 Methyltransferase domain BV884_12350 PF00472 RF-1 domain BV884_12350 PF03462 PCRF domain BV884_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_12360 PF03466 LysR substrate binding domain BV884_12380 PF00296 Luciferase-like monooxygenase BV884_12390 PF13994 PgaD-like protein BV884_12395 PF00535 Glycosyl transferase family 2 BV884_12400 PF01522 Polysaccharide deacetylase BV884_12400 PF14883 Hypothetical glycosyl hydrolase family 13 BV884_12410 PF03618 Kinase/pyrophosphorylase BV884_12415 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BV884_12415 PF02896 PEP-utilising enzyme, TIM barrel domain BV884_12415 PF00391 PEP-utilising enzyme, mobile domain BV884_12425 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BV884_12425 PF06481 COX Aromatic Rich Motif BV884_12430 PF00115 Cytochrome C and Quinol oxidase polypeptide I BV884_12435 PF00510 Cytochrome c oxidase subunit III BV884_12440 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BV884_12445 PF01040 UbiA prenyltransferase family BV884_12450 PF01250 Ribosomal protein S6 BV884_12455 PF01084 Ribosomal protein S18 BV884_12460 PF03948 Ribosomal protein L9, C-terminal domain BV884_12460 PF01281 Ribosomal protein L9, N-terminal domain BV884_12465 PF00772 DnaB-like helicase N terminal domain BV884_12465 PF03796 DnaB-like helicase C terminal domain BV884_12470 PF01168 Alanine racemase, N-terminal domain BV884_12470 PF00842 Alanine racemase, C-terminal domain BV884_12480 PF01841 Transglutaminase-like superfamily BV884_12480 PF08379 Bacterial transglutaminase-like N-terminal region BV884_12490 PF14403 Circularly permuted ATP-grasp type 2 BV884_12500 PF13932 GidA associated domain BV884_12500 PF01134 Glucose inhibited division protein A BV884_12520 PF02954 Bacterial regulatory protein, Fis family BV884_12525 PF02142 MGS-like domain BV884_12525 PF01808 AICARFT/IMPCHase bienzyme BV884_12530 PF02843 Phosphoribosylglycinamide synthetase, C domain BV884_12530 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BV884_12530 PF02844 Phosphoribosylglycinamide synthetase, N domain BV884_12535 PF03180 NLPA lipoprotein BV884_12540 PF00005 ABC transporter BV884_12540 PF09383 NIL domain BV884_12545 PF00528 Binding-protein-dependent transport system inner membrane component BV884_12550 PF00753 Metallo-beta-lactamase superfamily BV884_12550 PF16123 Hydroxyacylglutathione hydrolase C-terminus BV884_12560 PF00375 Sodium:dicarboxylate symporter family BV884_12575 PF13610 DDE domain BV884_12580 PF01051 Initiator Replication protein BV884_12600 PF13005 zinc-finger binding domain of transposase IS66 BV884_12600 PF13007 Transposase C of IS166 homeodomain BV884_12600 PF13817 IS66 C-terminal element BV884_12600 PF03050 Transposase IS66 family BV884_12610 PF01636 Phosphotransferase enzyme family BV884_12635 PF07091 Ribosomal RNA methyltransferase (FmrO) BV884_12640 PF13737 Transposase DDE domain BV884_12650 PF02470 MlaD protein BV884_12655 PF04403 Paraquat-inducible protein A BV884_12665 PF06826 Predicted Permease Membrane Region BV884_12665 PF02080 TrkA-C domain BV884_12670 PF00155 Aminotransferase class I and II BV884_12695 PF00083 Sugar (and other) transporter BV884_12695 PF08946 Osmosensory transporter coiled coil BV884_12745 PF07729 FCD domain BV884_12745 PF00392 Bacterial regulatory proteins, gntR family BV884_12755 PF03616 Sodium/glutamate symporter BV884_12760 PF00561 alpha/beta hydrolase fold BV884_12785 PF04076 Bacterial OB fold (BOF) protein BV884_12815 PF00324 Amino acid permease BV884_12820 PF00171 Aldehyde dehydrogenase family BV884_12825 PF00202 Aminotransferase class-III BV884_12830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_12830 PF03466 LysR substrate binding domain BV884_12855 PF00069 Protein kinase domain BV884_12875 PF00814 Glycoprotease family BV884_12880 PF01165 Ribosomal protein S21 BV884_12885 PF09424 Yqey-like protein BV884_12890 PF01435 Peptidase family M48 BV884_12895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BV884_12895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BV884_12910 PF00156 Phosphoribosyl transferase domain BV884_12915 PF02674 Colicin V production protein BV884_12920 PF01180 Dihydroorotate dehydrogenase BV884_12940 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BV884_12940 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BV884_12945 PF00881 Nitroreductase family BV884_12955 PF00270 DEAD/DEAH box helicase BV884_12955 PF00271 Helicase conserved C-terminal domain BV884_12960 PF00313 'Cold-shock' DNA-binding domain BV884_12970 PF04542 Sigma-70 region 2 BV884_12970 PF04545 Sigma-70, region 4 BV884_12970 PF00140 Sigma-70 factor, region 1.2 BV884_12975 PF04241 Protein of unknown function (DUF423) BV884_12985 PF05690 Thiazole biosynthesis protein ThiG BV884_12995 PF03883 Peroxide stress protein YaaA BV884_13005 PF12706 Beta-lactamase superfamily domain BV884_13010 PF07687 Peptidase dimerisation domain BV884_13010 PF01546 Peptidase family M20/M25/M40 BV884_13020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BV884_13025 PF00800 Prephenate dehydratase BV884_13025 PF01817 Chorismate mutase type II BV884_13025 PF01842 ACT domain BV884_13030 PF00756 Putative esterase BV884_13035 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_13035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_13035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_13040 PF00375 Sodium:dicarboxylate symporter family BV884_13050 PF02885 Glycosyl transferase family, helical bundle domain BV884_13050 PF00591 Glycosyl transferase family, a/b domain BV884_13055 PF07023 Protein of unknown function (DUF1315) BV884_13060 PF01513 ATP-NAD kinase BV884_13065 PF00912 Transglycosylase BV884_13065 PF00905 Penicillin binding protein transpeptidase domain BV884_13065 PF14814 Bifunctional transglycosylase second domain BV884_13075 PF00293 NUDIX domain BV884_13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_13085 PF08521 Two-component sensor kinase N-terminal BV884_13085 PF00512 His Kinase A (phospho-acceptor) domain BV884_13090 PF00486 Transcriptional regulatory protein, C terminal BV884_13090 PF00072 Response regulator receiver domain BV884_13100 PF00437 Type II/IV secretion system protein BV884_13110 PF18389 TrmO C-terminal domain BV884_13110 PF01980 tRNA-methyltransferase O BV884_13115 PF00175 Oxidoreductase NAD-binding domain BV884_13115 PF00970 Oxidoreductase FAD-binding domain BV884_13120 PF02567 Phenazine biosynthesis-like protein BV884_13125 PF00155 Aminotransferase class I and II BV884_13125 PF00392 Bacterial regulatory proteins, gntR family BV884_13135 PF00037 4Fe-4S binding domain BV884_13140 PF00893 Small Multidrug Resistance protein BV884_13145 PF00005 ABC transporter BV884_13150 PF00528 Binding-protein-dependent transport system inner membrane component BV884_13155 PF00528 Binding-protein-dependent transport system inner membrane component BV884_13160 PF00497 Bacterial extracellular solute-binding proteins, family 3 BV884_13165 PF03466 LysR substrate binding domain BV884_13165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_13170 PF13533 Biotin-lipoyl like BV884_13175 PF00873 AcrB/AcrD/AcrF family BV884_13180 PF02321 Outer membrane efflux protein BV884_13185 PF00464 Serine hydroxymethyltransferase BV884_13215 PF00005 ABC transporter BV884_13220 PF01061 ABC-2 type transporter BV884_13225 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BV884_13225 PF14489 QueF-like protein BV884_13235 PF01098 Cell cycle protein BV884_13240 PF13406 Transglycosylase SLT domain BV884_13245 PF03330 Lytic transglycolase BV884_13245 PF05036 Sporulation related domain BV884_13265 PF12833 Helix-turn-helix domain BV884_13275 PF00889 Elongation factor TS BV884_13280 PF00318 Ribosomal protein S2 BV884_13285 PF00557 Metallopeptidase family M24 BV884_13295 PF07690 Major Facilitator Superfamily BV884_13305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BV884_13305 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_13310 PF04055 Radical SAM superfamily BV884_13315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_13315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_13315 PF09317 Domain of unknown function (DUF1974) BV884_13330 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BV884_13330 PF05221 S-adenosyl-L-homocysteine hydrolase BV884_13335 PF02219 Methylenetetrahydrofolate reductase BV884_13340 PF04452 RNA methyltransferase BV884_13345 PF03707 Bacterial signalling protein N terminal repeat BV884_13345 PF00563 EAL domain BV884_13345 PF00990 Diguanylate cyclase, GGDEF domain BV884_13350 PF00390 Malic enzyme, N-terminal domain BV884_13350 PF03949 Malic enzyme, NAD binding domain BV884_13350 PF01515 Phosphate acetyl/butaryl transferase BV884_13355 PF12627 Probable RNA and SrmB- binding site of polymerase A BV884_13355 PF01743 Poly A polymerase head domain BV884_13360 PF13180 PDZ domain BV884_13365 PF01784 NIF3 (NGG1p interacting factor 3) BV884_13370 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BV884_13370 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BV884_13405 PF01040 UbiA prenyltransferase family BV884_13410 PF04345 Chorismate lyase BV884_13420 PF00854 POT family BV884_13430 PF00117 Glutamine amidotransferase class-I BV884_13435 PF11838 ERAP1-like C-terminal domain BV884_13435 PF01433 Peptidase family M1 domain BV884_13440 PF00593 TonB dependent receptor BV884_13440 PF07715 TonB-dependent Receptor Plug Domain BV884_13445 PF00591 Glycosyl transferase family, a/b domain BV884_13445 PF02885 Glycosyl transferase family, helical bundle domain BV884_13450 PF00218 Indole-3-glycerol phosphate synthase BV884_13465 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BV884_13465 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BV884_13470 PF01799 [2Fe-2S] binding domain BV884_13470 PF00111 2Fe-2S iron-sulfur cluster binding domain BV884_13495 PF00144 Beta-lactamase BV884_13510 PF05675 Protein of unknown function (DUF817) BV884_13515 PF01208 Uroporphyrinogen decarboxylase (URO-D) BV884_13525 PF00425 chorismate binding enzyme BV884_13535 PF00975 Thioesterase domain BV884_13540 PF00005 ABC transporter BV884_13540 PF00664 ABC transporter transmembrane region BV884_13545 PF00005 ABC transporter BV884_13545 PF00664 ABC transporter transmembrane region BV884_13550 PF00282 Pyridoxal-dependent decarboxylase conserved domain BV884_13555 PF00857 Isochorismatase family BV884_13555 PF00550 Phosphopantetheine attachment site BV884_13560 PF00501 AMP-binding enzyme BV884_13560 PF13193 AMP-binding enzyme C-terminal domain BV884_13565 PF00550 Phosphopantetheine attachment site BV884_13565 PF00668 Condensation domain BV884_13565 PF00501 AMP-binding enzyme BV884_13570 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BV884_13575 PF07715 TonB-dependent Receptor Plug Domain BV884_13575 PF00593 TonB dependent receptor BV884_13580 PF01497 Periplasmic binding protein BV884_13585 PF00005 ABC transporter BV884_13590 PF01032 FecCD transport family BV884_13595 PF01032 FecCD transport family BV884_13600 PF13193 AMP-binding enzyme C-terminal domain BV884_13600 PF00975 Thioesterase domain BV884_13600 PF00501 AMP-binding enzyme BV884_13600 PF00550 Phosphopantetheine attachment site BV884_13600 PF00668 Condensation domain BV884_13605 PF00501 AMP-binding enzyme BV884_13605 PF13193 AMP-binding enzyme C-terminal domain BV884_13605 PF00668 Condensation domain BV884_13605 PF00550 Phosphopantetheine attachment site BV884_13615 PF13309 HTH domain BV884_13615 PF08348 YheO-like PAS domain BV884_13625 PF17954 Quercetinase C-terminal cupin domain BV884_13625 PF02678 Pirin BV884_13645 PF00440 Bacterial regulatory proteins, tetR family BV884_13650 PF14765 Polyketide synthase dehydratase BV884_13650 PF08990 Erythronolide synthase docking BV884_13650 PF00550 Phosphopantetheine attachment site BV884_13650 PF08240 Alcohol dehydrogenase GroES-like domain BV884_13650 PF00698 Acyl transferase domain BV884_13650 PF09277 Erythronolide synthase, docking BV884_13650 PF08659 KR domain BV884_13650 PF02801 Beta-ketoacyl synthase, C-terminal domain BV884_13650 PF00109 Beta-ketoacyl synthase, N-terminal domain BV884_13650 PF16197 Ketoacyl-synthetase C-terminal extension BV884_13655 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BV884_13655 PF13378 Enolase C-terminal domain-like BV884_13660 PF00083 Sugar (and other) transporter BV884_13665 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BV884_13675 PF00892 EamA-like transporter family BV884_13695 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BV884_13695 PF01266 FAD dependent oxidoreductase BV884_13700 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_13700 PF18113 Rubredoxin binding C-terminal domain BV884_13710 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BV884_13710 PF00355 Rieske [2Fe-2S] domain BV884_13715 PF02028 BCCT, betaine/carnitine/choline family transporter BV884_13720 PF02028 BCCT, betaine/carnitine/choline family transporter BV884_13725 PF03466 LysR substrate binding domain BV884_13725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_13730 PF00324 Amino acid permease BV884_13735 PF00171 Aldehyde dehydrogenase family BV884_13750 PF06018 CodY GAF-like domain BV884_13750 PF17853 GGDEF-like domain BV884_13750 PF13556 PucR C-terminal helix-turn-helix domain BV884_13790 PF04328 Selenoprotein, putative BV884_13795 PF02554 Carbon starvation protein CstA BV884_13795 PF13722 5TM C-terminal transporter carbon starvation CstA BV884_13800 PF09285 Elongation factor P, C-terminal BV884_13800 PF01132 Elongation factor P (EF-P) OB domain BV884_13800 PF08207 Elongation factor P (EF-P) KOW-like domain BV884_13805 PF04055 Radical SAM superfamily BV884_13820 PF01197 Ribosomal protein L31 BV884_13825 PF13593 SBF-like CPA transporter family (DUF4137) BV884_13830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BV884_13835 PF07690 Major Facilitator Superfamily BV884_13840 PF13654 AAA domain BV884_13840 PF05362 Lon protease (S16) C-terminal proteolytic domain BV884_13845 PF03466 LysR substrate binding domain BV884_13845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_13850 PF01551 Peptidase family M23 BV884_13850 PF01476 LysM domain BV884_13855 PF01975 Survival protein SurE BV884_13870 PF07943 Penicillin-binding protein 5, C-terminal domain BV884_13870 PF00768 D-alanyl-D-alanine carboxypeptidase BV884_13875 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_13880 PF13344 Haloacid dehalogenase-like hydrolase BV884_13880 PF00293 NUDIX domain BV884_13890 PF04356 Protein of unknown function (DUF489) BV884_13895 PF00206 Lyase BV884_13895 PF08328 Adenylosuccinate lyase C-terminal BV884_13905 PF00872 Transposase, Mutator family BV884_13915 PF08496 Peptidase family S49 N-terminal BV884_13915 PF01343 Peptidase family S49 BV884_13920 PF00005 ABC transporter BV884_13925 PF00528 Binding-protein-dependent transport system inner membrane component BV884_13930 PF00528 Binding-protein-dependent transport system inner membrane component BV884_13935 PF12849 PBP superfamily domain BV884_13940 PF00324 Amino acid permease BV884_13945 PF00205 Thiamine pyrophosphate enzyme, central domain BV884_13945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BV884_13945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BV884_13950 PF01037 Lrp/AsnC ligand binding domain BV884_13955 PF00171 Aldehyde dehydrogenase family BV884_13960 PF00282 Pyridoxal-dependent decarboxylase conserved domain BV884_13965 PF00202 Aminotransferase class-III BV884_13975 PF00440 Bacterial regulatory proteins, tetR family BV884_13975 PF17754 MftR C-terminal domain BV884_13985 PF00487 Fatty acid desaturase BV884_13990 PF00111 2Fe-2S iron-sulfur cluster binding domain BV884_13990 PF00175 Oxidoreductase NAD-binding domain BV884_13990 PF00970 Oxidoreductase FAD-binding domain BV884_13995 PF00440 Bacterial regulatory proteins, tetR family BV884_14005 PF18337 RapA N-terminal Tudor like domain BV884_14005 PF00271 Helicase conserved C-terminal domain BV884_14005 PF12137 RNA polymerase recycling family C-terminal BV884_14005 PF00176 SNF2 family N-terminal domain BV884_14005 PF18339 RapA N-terminal Tudor like domain 1 BV884_14010 PF00849 RNA pseudouridylate synthase BV884_14020 PF00202 Aminotransferase class-III BV884_14025 PF02581 Thiamine monophosphate synthase BV884_14050 PF00675 Insulinase (Peptidase family M16) BV884_14050 PF05193 Peptidase M16 inactive domain BV884_14055 PF02567 Phenazine biosynthesis-like protein BV884_14065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_14065 PF03466 LysR substrate binding domain BV884_14070 PF06779 Uncharacterised MFS-type transporter YbfB BV884_14085 PF00180 Isocitrate/isopropylmalate dehydrogenase BV884_14090 PF00849 RNA pseudouridylate synthase BV884_14095 PF03971 Monomeric isocitrate dehydrogenase BV884_14105 PF00768 D-alanyl-D-alanine carboxypeptidase BV884_14105 PF07943 Penicillin-binding protein 5, C-terminal domain BV884_14110 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_14115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BV884_14120 PF03441 FAD binding domain of DNA photolyase BV884_14120 PF00875 DNA photolyase BV884_14150 PF02350 UDP-N-acetylglucosamine 2-epimerase BV884_14165 PF03060 Nitronate monooxygenase BV884_14170 PF01207 Dihydrouridine synthase (Dus) BV884_14175 PF07759 Protein of unknown function (DUF1615) BV884_14185 PF00696 Amino acid kinase family BV884_14185 PF01472 PUA domain BV884_14190 PF01018 GTP1/OBG BV884_14190 PF01926 50S ribosome-binding GTPase BV884_14205 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BV884_14205 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BV884_14210 PF00892 EamA-like transporter family BV884_14220 PF12344 Ultra-violet resistance protein B BV884_14220 PF17757 UvrB interaction domain BV884_14220 PF00271 Helicase conserved C-terminal domain BV884_14220 PF04851 Type III restriction enzyme, res subunit BV884_14220 PF02151 UvrB/uvrC motif BV884_14230 PF00990 Diguanylate cyclase, GGDEF domain BV884_14230 PF17151 Periplasmic sensor domain BV884_14265 PF00106 short chain dehydrogenase BV884_14270 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) BV884_14275 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BV884_14280 PF11967 Recombination protein O N terminal BV884_14280 PF02565 Recombination protein O C terminal BV884_14290 PF07650 KH domain BV884_14290 PF01926 50S ribosome-binding GTPase BV884_14295 PF14622 Ribonuclease-III-like BV884_14295 PF00035 Double-stranded RNA binding motif BV884_14305 PF10502 Signal peptidase, peptidase S26 BV884_14310 PF00679 Elongation factor G C-terminus BV884_14310 PF00009 Elongation factor Tu GTP binding domain BV884_14310 PF03144 Elongation factor Tu domain 2 BV884_14310 PF06421 GTP-binding protein LepA C-terminus BV884_14320 PF13180 PDZ domain BV884_14325 PF02910 Fumarate reductase flavoprotein C-term BV884_14325 PF00890 FAD binding domain BV884_14335 PF02223 Thymidylate kinase BV884_14340 PF02618 YceG-like family BV884_14345 PF01063 Amino-transferase class IV BV884_14360 PF00528 Binding-protein-dependent transport system inner membrane component BV884_14365 PF00528 Binding-protein-dependent transport system inner membrane component BV884_14370 PF00005 ABC transporter BV884_14370 PF12857 TOBE-like domain BV884_14375 PF03466 LysR substrate binding domain BV884_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_14385 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BV884_14385 PF14602 Hexapeptide repeat of succinyl-transferase BV884_14385 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_14395 PF06508 Queuosine biosynthesis protein QueC BV884_14410 PF00578 AhpC/TSA family BV884_14420 PF01467 Cytidylyltransferase-like BV884_14420 PF00293 NUDIX domain BV884_14425 PF00378 Enoyl-CoA hydratase/isomerase BV884_14430 PF01784 NIF3 (NGG1p interacting factor 3) BV884_14435 PF07690 Major Facilitator Superfamily BV884_14440 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BV884_14440 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BV884_14440 PF02769 AIR synthase related protein, C-terminal domain BV884_14445 PF01966 HD domain BV884_14450 PF07499 RuvA, C-terminal domain BV884_14450 PF01330 RuvA N terminal domain BV884_14455 PF17864 RuvB AAA lid domain BV884_14455 PF05491 RuvB C-terminal winged helix domain BV884_14455 PF05496 Holliday junction DNA helicase RuvB P-loop domain BV884_14460 PF01546 Peptidase family M20/M25/M40 BV884_14460 PF07687 Peptidase dimerisation domain BV884_14465 PF03061 Thioesterase superfamily BV884_14470 PF01618 MotA/TolQ/ExbB proton channel family BV884_14475 PF02472 Biopolymer transport protein ExbD/TolR BV884_14485 PF04052 TolB amino-terminal domain BV884_14485 PF07676 WD40-like Beta Propeller Repeat BV884_14490 PF00691 OmpA family BV884_14500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BV884_14505 PF00588 SpoU rRNA Methylase family BV884_14505 PF08032 RNA 2'-O ribose methyltransferase substrate binding BV884_14555 PF11638 DnaA N-terminal domain BV884_14555 PF08299 Bacterial dnaA protein helix-turn-helix BV884_14555 PF00308 Bacterial dnaA protein BV884_14560 PF01594 AI-2E family transporter BV884_14565 PF00586 AIR synthase related protein, N-terminal domain BV884_14565 PF02769 AIR synthase related protein, C-terminal domain BV884_14570 PF00551 Formyl transferase BV884_14575 PF12697 Alpha/beta hydrolase family BV884_14580 PF01343 Peptidase family S49 BV884_14580 PF06965 Na+/H+ antiporter 1 BV884_14590 PF00753 Metallo-beta-lactamase superfamily BV884_14590 PF03772 Competence protein BV884_14590 PF13567 Domain of unknown function (DUF4131) BV884_14595 PF00005 ABC transporter BV884_14600 PF02687 FtsX-like permease family BV884_14600 PF12704 MacB-like periplasmic core domain BV884_14610 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BV884_14620 PF00266 Aminotransferase class-V BV884_14630 PF13533 Biotin-lipoyl like BV884_14650 PF00535 Glycosyl transferase family 2 BV884_14665 PF03989 DNA gyrase C-terminal domain, beta-propeller BV884_14665 PF00521 DNA gyrase/topoisomerase IV, subunit A BV884_14670 PF00766 Electron transfer flavoprotein FAD-binding domain BV884_14670 PF01012 Electron transfer flavoprotein domain BV884_14675 PF01012 Electron transfer flavoprotein domain BV884_14680 PF00589 Phage integrase family BV884_14680 PF02899 Phage integrase, N-terminal SAM-like domain BV884_14685 PF01810 LysE type translocator BV884_14690 PF01678 Diaminopimelate epimerase BV884_14695 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BV884_14695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BV884_14705 PF00324 Amino acid permease BV884_14710 PF18073 Rubredoxin metal binding domain BV884_14720 PF00152 tRNA synthetases class II (D, K and N) BV884_14725 PF11890 Domain of unknown function (DUF3410) BV884_14725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BV884_14725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BV884_14730 PF06803 Protein of unknown function (DUF1232) BV884_14735 PF02634 FdhD/NarQ family BV884_14740 PF00384 Molybdopterin oxidoreductase BV884_14745 PF02595 Glycerate kinase family BV884_14760 PF00881 Nitroreductase family BV884_14790 PF00501 AMP-binding enzyme BV884_14790 PF13193 AMP-binding enzyme C-terminal domain BV884_14790 PF00668 Condensation domain BV884_14790 PF00550 Phosphopantetheine attachment site BV884_14790 PF00975 Thioesterase domain BV884_14805 PF03449 Transcription elongation factor, N-terminal BV884_14805 PF01272 Transcription elongation factor, GreA/GreB, C-term BV884_14810 PF01464 Transglycosylase SLT domain BV884_14810 PF00497 Bacterial extracellular solute-binding proteins, family 3 BV884_14820 PF01171 PP-loop family BV884_14830 PF01464 Transglycosylase SLT domain BV884_14835 PF01435 Peptidase family M48 BV884_14845 PF00873 AcrB/AcrD/AcrF family BV884_14850 PF03009 Glycerophosphoryl diester phosphodiesterase family BV884_14860 PF01219 Prokaryotic diacylglycerol kinase BV884_14865 PF00118 TCP-1/cpn60 chaperonin family BV884_14870 PF00166 Chaperonin 10 Kd subunit BV884_14880 PF00149 Calcineurin-like phosphoesterase BV884_14885 PF00781 Diacylglycerol kinase catalytic domain BV884_14890 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain BV884_14890 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain BV884_14895 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BV884_14895 PF01266 FAD dependent oxidoreductase BV884_14900 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BV884_14900 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BV884_14905 PF00083 Sugar (and other) transporter BV884_14920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BV884_14920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BV884_14935 PF09423 PhoD-like phosphatase BV884_14935 PF16655 PhoD-like phosphatase, N-terminal domain BV884_14955 PF00809 Pterin binding enzyme BV884_14960 PF00004 ATPase family associated with various cellular activities (AAA) BV884_14960 PF17862 AAA+ lid domain BV884_14960 PF01434 Peptidase family M41 BV884_14960 PF06480 FtsH Extracellular BV884_14965 PF01728 FtsJ-like methyltransferase BV884_14970 PF01985 CRS1 / YhbY (CRM) domain BV884_14990 PF00117 Glutamine amidotransferase class-I BV884_14990 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BV884_14995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BV884_14995 PF02142 MGS-like domain BV884_14995 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BV884_15000 PF03449 Transcription elongation factor, N-terminal BV884_15000 PF01272 Transcription elongation factor, GreA/GreB, C-term BV884_15005 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_15010 PF00582 Universal stress protein family BV884_15015 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BV884_15025 PF09587 Bacterial capsule synthesis protein PGA_cap BV884_15050 PF00999 Sodium/hydrogen exchanger family BV884_15055 PF04228 Putative neutral zinc metallopeptidase BV884_15060 PF05661 Protein of unknown function (DUF808) BV884_15065 PF00579 tRNA synthetases class I (W and Y) BV884_15070 PF00549 CoA-ligase BV884_15070 PF02629 CoA binding domain BV884_15075 PF08442 ATP-grasp domain BV884_15075 PF00549 CoA-ligase BV884_15080 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_15080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BV884_15085 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BV884_15085 PF02817 e3 binding domain BV884_15085 PF00364 Biotin-requiring enzyme BV884_15090 PF00676 Dehydrogenase E1 component BV884_15090 PF16870 2-oxoglutarate dehydrogenase C-terminal BV884_15090 PF02779 Transketolase, pyrimidine binding domain BV884_15090 PF16078 2-oxoglutarate dehydrogenase N-terminus BV884_15100 PF13085 2Fe-2S iron-sulfur cluster binding domain BV884_15105 PF00890 FAD binding domain BV884_15105 PF02910 Fumarate reductase flavoprotein C-term BV884_15110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BV884_15115 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BV884_15120 PF00285 Citrate synthase, C-terminal domain BV884_15150 PF04546 Sigma-70, non-essential region BV884_15150 PF03979 Sigma-70 factor, region 1.1 BV884_15150 PF00140 Sigma-70 factor, region 1.2 BV884_15150 PF04542 Sigma-70 region 2 BV884_15150 PF04539 Sigma-70 region 3 BV884_15150 PF04545 Sigma-70, region 4 BV884_15155 PF04359 Protein of unknown function (DUF493) BV884_15160 PF03099 Biotin/lipoate A/B protein ligase family BV884_15170 PF00465 Iron-containing alcohol dehydrogenase BV884_15175 PF13520 Amino acid permease BV884_15180 PF03358 NADPH-dependent FMN reductase BV884_15185 PF01638 HxlR-like helix-turn-helix BV884_15190 PF00588 SpoU rRNA Methylase family BV884_15195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BV884_15195 PF14824 Sirohaem biosynthesis protein central BV884_15195 PF10414 Sirohaem synthase dimerisation region BV884_15200 PF02403 Seryl-tRNA synthetase N-terminal domain BV884_15200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BV884_15210 PF03548 Outer membrane lipoprotein carrier protein LolA BV884_15215 PF01016 Ribosomal L27 protein BV884_15220 PF00829 Ribosomal prokaryotic L21 protein BV884_15230 PF00348 Polyprenyl synthetase BV884_15240 PF01569 PAP2 superfamily BV884_15245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BV884_15245 PF00529 HlyD membrane-fusion protein of T1SS BV884_15250 PF00873 AcrB/AcrD/AcrF family BV884_15255 PF02321 Outer membrane efflux protein BV884_15260 PF01906 Putative heavy-metal-binding BV884_15265 PF01906 Putative heavy-metal-binding BV884_15285 PF08264 Anticodon-binding domain of tRNA BV884_15285 PF10458 Valyl tRNA synthetase tRNA binding arm BV884_15285 PF00133 tRNA synthetases class I (I, L, M and V) BV884_15305 PF03466 LysR substrate binding domain BV884_15305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_15315 PF00909 Ammonium Transporter Family BV884_15325 PF08521 Two-component sensor kinase N-terminal BV884_15325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_15325 PF00512 His Kinase A (phospho-acceptor) domain BV884_15330 PF00486 Transcriptional regulatory protein, C terminal BV884_15330 PF00072 Response regulator receiver domain BV884_15335 PF08019 Phosphoethanolamine transferase EptA/EptB BV884_15335 PF00884 Sulfatase BV884_15355 PF01734 Patatin-like phospholipase BV884_15365 PF01145 SPFH domain / Band 7 family BV884_15370 PF04237 YjbR BV884_15375 PF00348 Polyprenyl synthetase BV884_15380 PF04303 PrpF protein BV884_15385 PF00324 Amino acid permease BV884_15395 PF01965 DJ-1/PfpI family BV884_15400 PF14765 Polyketide synthase dehydratase BV884_15400 PF00550 Phosphopantetheine attachment site BV884_15400 PF08659 KR domain BV884_15400 PF02801 Beta-ketoacyl synthase, C-terminal domain BV884_15400 PF00109 Beta-ketoacyl synthase, N-terminal domain BV884_15400 PF16197 Ketoacyl-synthetase C-terminal extension BV884_15400 PF09277 Erythronolide synthase, docking BV884_15400 PF08990 Erythronolide synthase docking BV884_15400 PF00698 Acyl transferase domain BV884_15400 PF08240 Alcohol dehydrogenase GroES-like domain BV884_15405 PF12833 Helix-turn-helix domain BV884_15405 PF06719 AraC-type transcriptional regulator N-terminus BV884_15410 PF02673 Bacitracin resistance protein BacA BV884_15430 PF02525 Flavodoxin-like fold BV884_15445 PF01507 Phosphoadenosine phosphosulfate reductase family BV884_15450 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain BV884_15450 PF06974 Protein of unknown function (DUF1298) BV884_15455 PF00575 S1 RNA binding domain BV884_15455 PF10150 Ribonuclease E/G family BV884_15460 PF02545 Maf-like protein BV884_15465 PF04093 rod shape-determining protein MreD BV884_15470 PF04085 rod shape-determining protein MreC BV884_15480 PF02686 Glu-tRNAGln amidotransferase C subunit BV884_15485 PF01425 Amidase BV884_15490 PF02637 GatB domain BV884_15490 PF02934 GatB/GatE catalytic domain BV884_15535 PF05992 SbmA/BacA-like family BV884_15540 PF13291 ACT domain BV884_15540 PF00291 Pyridoxal-phosphate dependent enzyme BV884_15545 PF01734 Patatin-like phospholipase BV884_15550 PF01235 Sodium:alanine symporter family BV884_15560 PF00881 Nitroreductase family BV884_15565 PF07690 Major Facilitator Superfamily BV884_15570 PF12805 FUSC-like inner membrane protein yccS BV884_15580 PF00258 Flavodoxin BV884_15580 PF00175 Oxidoreductase NAD-binding domain BV884_15580 PF00667 FAD binding domain BV884_15620 PF17969 L,D-transpeptidase C-terminal domain BV884_15620 PF03734 L,D-transpeptidase catalytic domain BV884_15625 PF04304 Protein of unknown function (DUF454) BV884_15635 PF08085 Entericidin EcnA/B family BV884_15640 PF07687 Peptidase dimerisation domain BV884_15640 PF01546 Peptidase family M20/M25/M40 BV884_15650 PF00072 Response regulator receiver domain BV884_15650 PF01627 Hpt domain BV884_15650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_15650 PF01584 CheW-like domain BV884_15655 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BV884_15655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BV884_15660 PF01584 CheW-like domain BV884_15665 PF00072 Response regulator receiver domain BV884_15670 PF00072 Response regulator receiver domain BV884_15685 PF00873 AcrB/AcrD/AcrF family BV884_15690 PF03129 Anticodon binding domain BV884_15690 PF04073 Aminoacyl-tRNA editing domain BV884_15690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BV884_15695 PF07411 Domain of unknown function (DUF1508) BV884_15700 PF03831 PhnA domain BV884_15700 PF08274 PhnA Zinc-Ribbon BV884_15705 PF04343 Protein of unknown function, DUF488 BV884_15715 PF01571 Aminomethyltransferase folate-binding domain BV884_15720 PF13098 Thioredoxin-like domain BV884_15720 PF10411 Disulfide bond isomerase protein N-terminus BV884_15735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BV884_15740 PF00593 TonB dependent receptor BV884_15740 PF07715 TonB-dependent Receptor Plug Domain BV884_15765 PF02245 Methylpurine-DNA glycosylase (MPG) BV884_15770 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BV884_15770 PF06827 Zinc finger found in FPG and IleRS BV884_15770 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BV884_15785 PF01741 Large-conductance mechanosensitive channel, MscL BV884_15795 PF00860 Permease family BV884_15800 PF08468 Methyltransferase small domain N-terminal BV884_15800 PF05175 Methyltransferase small domain BV884_15805 PF00324 Amino acid permease BV884_15810 PF01139 tRNA-splicing ligase RtcB BV884_15820 PF13505 Outer membrane protein beta-barrel domain BV884_15820 PF00691 OmpA family BV884_15830 PF02803 Thiolase, C-terminal domain BV884_15830 PF00108 Thiolase, N-terminal domain BV884_15840 PF00893 Small Multidrug Resistance protein BV884_15850 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BV884_15850 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BV884_15855 PF01011 PQQ enzyme repeat BV884_15860 PF04966 Carbohydrate-selective porin, OprB family BV884_15865 PF02515 CoA-transferase family III BV884_15870 PF12833 Helix-turn-helix domain BV884_15870 PF02311 AraC-like ligand binding domain BV884_15875 PF00108 Thiolase, N-terminal domain BV884_15875 PF02803 Thiolase, C-terminal domain BV884_15880 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BV884_15880 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BV884_15880 PF00378 Enoyl-CoA hydratase/isomerase BV884_15910 PF03006 Haemolysin-III related BV884_15915 PF00083 Sugar (and other) transporter BV884_15915 PF07690 Major Facilitator Superfamily BV884_15925 PF07517 SecA DEAD-like domain BV884_15925 PF02810 SEC-C motif BV884_15925 PF07516 SecA Wing and Scaffold domain BV884_15925 PF01043 SecA preprotein cross-linking domain BV884_15930 PF00578 AhpC/TSA family BV884_15930 PF10417 C-terminal domain of 1-Cys peroxiredoxin BV884_15935 PF00753 Metallo-beta-lactamase superfamily BV884_15950 PF02875 Mur ligase family, glutamate ligase domain BV884_15950 PF08245 Mur ligase middle domain BV884_15955 PF01039 Carboxyl transferase domain BV884_15960 PF00290 Tryptophan synthase alpha chain BV884_15985 PF00291 Pyridoxal-phosphate dependent enzyme BV884_15990 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BV884_15995 PF00593 TonB dependent receptor BV884_15995 PF07715 TonB-dependent Receptor Plug Domain BV884_16000 PF01923 Cobalamin adenosyltransferase BV884_16020 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BV884_16025 PF00072 Response regulator receiver domain BV884_16025 PF00486 Transcriptional regulatory protein, C terminal BV884_16030 PF00512 His Kinase A (phospho-acceptor) domain BV884_16030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_16030 PF00672 HAMP domain BV884_16040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_16040 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_16040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_16040 PF12806 Acetyl-CoA dehydrogenase C-terminal like BV884_16045 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_16045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_16045 PF12806 Acetyl-CoA dehydrogenase C-terminal like BV884_16045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_16050 PF03466 LysR substrate binding domain BV884_16050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_16055 PF00043 Glutathione S-transferase, C-terminal domain BV884_16055 PF02798 Glutathione S-transferase, N-terminal domain BV884_16060 PF06146 Phosphate-starvation-inducible E BV884_16080 PF00593 TonB dependent receptor BV884_16080 PF07715 TonB-dependent Receptor Plug Domain BV884_16090 PF00152 tRNA synthetases class II (D, K and N) BV884_16090 PF02938 GAD domain BV884_16090 PF01336 OB-fold nucleic acid binding domain BV884_16095 PF17101 Stealth protein CR1, conserved region 1 BV884_16095 PF11380 Stealth protein CR2, conserved region 2 BV884_16095 PF17102 Stealth protein CR3, conserved region 3 BV884_16120 PF13439 Glycosyltransferase Family 4 BV884_16120 PF00534 Glycosyl transferases group 1 BV884_16125 PF00535 Glycosyl transferase family 2 BV884_16130 PF01522 Polysaccharide deacetylase BV884_16145 PF01063 Amino-transferase class IV BV884_16150 PF08335 GlnD PII-uridylyltransferase BV884_16150 PF03710 Glutamate-ammonia ligase adenylyltransferase BV884_16155 PF00512 His Kinase A (phospho-acceptor) domain BV884_16155 PF07689 KaiB domain BV884_16155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_16165 PF02547 Queuosine biosynthesis protein BV884_16180 PF01702 Queuine tRNA-ribosyltransferase BV884_16185 PF02699 Preprotein translocase subunit BV884_16190 PF07549 SecD/SecF GG Motif BV884_16190 PF13721 SecD export protein N-terminal TM region BV884_16190 PF02355 Protein export membrane protein BV884_16195 PF07549 SecD/SecF GG Motif BV884_16195 PF02355 Protein export membrane protein BV884_16200 PF04127 DNA / pantothenate metabolism flavoprotein BV884_16200 PF02441 Flavoprotein BV884_16205 PF04002 RadC-like JAB domain BV884_16210 PF01062 Bestrophin, RFP-TM, chloride channel BV884_16215 PF02811 PHP domain BV884_16220 PF04279 Intracellular septation protein A BV884_16225 PF03795 YCII-related domain BV884_16235 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BV884_16235 PF01266 FAD dependent oxidoreductase BV884_16245 PF04461 Protein of unknown function (DUF520) BV884_16255 PF03061 Thioesterase superfamily BV884_16260 PF00085 Thioredoxin BV884_16265 PF00561 alpha/beta hydrolase fold BV884_16270 PF00753 Metallo-beta-lactamase superfamily BV884_16270 PF04273 Putative phosphatase (DUF442) BV884_16280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BV884_16280 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_16315 PF00990 Diguanylate cyclase, GGDEF domain BV884_16315 PF17152 Periplasmic sensor domain BV884_16320 PF01389 OmpA-like transmembrane domain BV884_16320 PF00691 OmpA family BV884_16325 PF10518 TAT (twin-arginine translocation) pathway signal sequence BV884_16325 PF00149 Calcineurin-like phosphoesterase BV884_16330 PF13091 PLD-like domain BV884_16340 PF01926 50S ribosome-binding GTPase BV884_16340 PF13167 GTP-binding GTPase N-terminal BV884_16340 PF16360 GTP-binding GTPase Middle Region BV884_16360 PF00149 Calcineurin-like phosphoesterase BV884_16365 PF00398 Ribosomal RNA adenine dimethylase BV884_16370 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BV884_16375 PF00572 Ribosomal protein L13 BV884_16380 PF00380 Ribosomal protein S9/S16 BV884_16385 PF00043 Glutathione S-transferase, C-terminal domain BV884_16385 PF13417 Glutathione S-transferase, N-terminal domain BV884_16390 PF04386 Stringent starvation protein B BV884_16400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BV884_16400 PF00364 Biotin-requiring enzyme BV884_16400 PF02785 Biotin carboxylase C-terminal domain BV884_16400 PF00289 Biotin carboxylase, N-terminal domain BV884_16410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_16410 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_16410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_16415 PF01039 Carboxyl transferase domain BV884_16430 PF17932 Tetracyclin repressor-like, C-terminal domain BV884_16430 PF00440 Bacterial regulatory proteins, tetR family BV884_16435 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_16435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_16435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_16480 PF01066 CDP-alcohol phosphatidyltransferase BV884_16485 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BV884_16505 PF00056 lactate/malate dehydrogenase, NAD binding domain BV884_16505 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BV884_16515 PF10145 Phage-related minor tail protein BV884_16515 PF01551 Peptidase family M23 BV884_16515 PF01464 Transglycosylase SLT domain BV884_16520 PF04055 Radical SAM superfamily BV884_16520 PF01938 TRAM domain BV884_16520 PF00919 Uncharacterized protein family UPF0004 BV884_16525 PF02562 PhoH-like protein BV884_16530 PF02130 Uncharacterized protein family UPF0054 BV884_16555 PF03358 NADPH-dependent FMN reductase BV884_16560 PF03631 Virulence factor BrkB BV884_16565 PF00892 EamA-like transporter family BV884_16570 PF12833 Helix-turn-helix domain BV884_16575 PF01557 Fumarylacetoacetate (FAA) hydrolase family BV884_16620 PF08206 Ribonuclease B OB domain BV884_16620 PF08461 Ribonuclease R winged-helix domain BV884_16620 PF17876 Cold shock domain BV884_16620 PF00575 S1 RNA binding domain BV884_16620 PF00773 RNB domain BV884_16625 PF01432 Peptidase family M3 BV884_16630 PF09526 Probable metal-binding protein (DUF2387) BV884_16660 PF03937 Flavinator of succinate dehydrogenase BV884_16665 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_16665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_16665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_16670 PF00743 Flavin-binding monooxygenase-like BV884_16675 PF01196 Ribosomal protein L17 BV884_16680 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BV884_16680 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BV884_16680 PF01000 RNA polymerase Rpb3/RpoA insert domain BV884_16685 PF00163 Ribosomal protein S4/S9 N-terminal domain BV884_16685 PF01479 S4 domain BV884_16690 PF00411 Ribosomal protein S11 BV884_16695 PF00416 Ribosomal protein S13/S18 BV884_16700 PF00444 Ribosomal protein L36 BV884_16705 PF00344 SecY translocase BV884_16710 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BV884_16715 PF00327 Ribosomal protein L30p/L7e BV884_16720 PF00333 Ribosomal protein S5, N-terminal domain BV884_16720 PF03719 Ribosomal protein S5, C-terminal domain BV884_16725 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BV884_16730 PF00347 Ribosomal protein L6 BV884_16735 PF00410 Ribosomal protein S8 BV884_16740 PF00253 Ribosomal protein S14p/S29e BV884_16745 PF00281 Ribosomal protein L5 BV884_16745 PF00673 ribosomal L5P family C-terminus BV884_16750 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BV884_16750 PF00467 KOW motif BV884_16755 PF00238 Ribosomal protein L14p/L23e BV884_16760 PF00366 Ribosomal protein S17 BV884_16765 PF00831 Ribosomal L29 protein BV884_16770 PF00252 Ribosomal protein L16p/L10e BV884_16775 PF07650 KH domain BV884_16775 PF00189 Ribosomal protein S3, C-terminal domain BV884_16780 PF00237 Ribosomal protein L22p/L17e BV884_16785 PF00203 Ribosomal protein S19 BV884_16790 PF00181 Ribosomal Proteins L2, RNA binding domain BV884_16790 PF03947 Ribosomal Proteins L2, C-terminal domain BV884_16795 PF00276 Ribosomal protein L23 BV884_16800 PF00573 Ribosomal protein L4/L1 family BV884_16805 PF00297 Ribosomal protein L3 BV884_16810 PF00338 Ribosomal protein S10p/S20e BV884_16815 PF00117 Glutamine amidotransferase class-I BV884_16820 PF01053 Cys/Met metabolism PLP-dependent enzyme BV884_16825 PF05872 Bacterial protein of unknown function (DUF853) BV884_16830 PF00175 Oxidoreductase NAD-binding domain BV884_16830 PF00970 Oxidoreductase FAD-binding domain BV884_16830 PF00042 Globin BV884_16835 PF02082 Transcriptional regulator BV884_16840 PF01926 50S ribosome-binding GTPase BV884_16850 PF00375 Sodium:dicarboxylate symporter family BV884_16860 PF01553 Acyltransferase BV884_16875 PF00271 Helicase conserved C-terminal domain BV884_16875 PF17191 RecG wedge domain BV884_16875 PF00270 DEAD/DEAH box helicase BV884_16880 PF00156 Phosphoribosyl transferase domain BV884_16885 PF00293 NUDIX domain BV884_16890 PF03641 Possible lysine decarboxylase BV884_16895 PF01544 CorA-like Mg2+ transporter protein BV884_16905 PF05494 MlaC protein BV884_16915 PF02405 Permease MlaE BV884_16920 PF00005 ABC transporter BV884_16925 PF00271 Helicase conserved C-terminal domain BV884_16925 PF00270 DEAD/DEAH box helicase BV884_16925 PF03880 DbpA RNA binding domain BV884_16925 PF12343 Cold shock protein DEAD box A BV884_16930 PF00459 Inositol monophosphatase family BV884_16935 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BV884_16935 PF02780 Transketolase, C-terminal domain BV884_16935 PF02779 Transketolase, pyrimidine binding domain BV884_16940 PF00925 GTP cyclohydrolase II BV884_16945 PF01218 Coproporphyrinogen III oxidase BV884_16950 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BV884_16950 PF08501 Shikimate dehydrogenase substrate binding domain BV884_16950 PF01488 Shikimate / quinate 5-dehydrogenase BV884_16960 PF12806 Acetyl-CoA dehydrogenase C-terminal like BV884_16960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BV884_16960 PF02770 Acyl-CoA dehydrogenase, middle domain BV884_16960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BV884_16970 PF04024 PspC domain BV884_16975 PF00571 CBS domain BV884_17000 PF02091 Glycyl-tRNA synthetase alpha subunit BV884_17005 PF05746 DALR anticodon binding domain BV884_17005 PF02092 Glycyl-tRNA synthetase beta subunit BV884_17015 PF00892 EamA-like transporter family BV884_17020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_17020 PF03466 LysR substrate binding domain BV884_17050 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BV884_17055 PF04996 Succinylarginine dihydrolase BV884_17060 PF00171 Aldehyde dehydrogenase family BV884_17065 PF04958 Arginine N-succinyltransferase beta subunit BV884_17070 PF00202 Aminotransferase class-III BV884_17075 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BV884_17075 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BV884_17080 PF00324 Amino acid permease BV884_17110 PF13614 AAA domain BV884_17115 PF01594 AI-2E family transporter BV884_17120 PF00080 Copper/zinc superoxide dismutase (SODC) BV884_17125 PF12805 FUSC-like inner membrane protein yccS BV884_17130 PF07690 Major Facilitator Superfamily BV884_17140 PF02525 Flavodoxin-like fold BV884_17145 PF03992 Antibiotic biosynthesis monooxygenase BV884_17155 PF02913 FAD linked oxidases, C-terminal domain BV884_17155 PF01565 FAD binding domain BV884_17160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BV884_17160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BV884_17165 PF00892 EamA-like transporter family BV884_17170 PF00892 EamA-like transporter family BV884_17180 PF01925 Sulfite exporter TauE/SafE BV884_17185 PF01509 TruB family pseudouridylate synthase (N terminal domain) BV884_17185 PF09157 Pseudouridine synthase II TruB, C-terminal BV884_17185 PF16198 tRNA pseudouridylate synthase B C-terminal domain BV884_17190 PF03280 Proteobacterial lipase chaperone protein BV884_17195 PF00561 alpha/beta hydrolase fold BV884_17200 PF01245 Ribosomal protein L19 BV884_17205 PF01746 tRNA (Guanine-1)-methyltransferase BV884_17210 PF01782 RimM N-terminal domain BV884_17210 PF05239 PRC-barrel domain BV884_17215 PF00886 Ribosomal protein S16 BV884_17255 PF02401 LytB protein BV884_17260 PF00625 Guanylate kinase BV884_17265 PF01192 RNA polymerase Rpb6 BV884_17270 PF02824 TGS domain BV884_17270 PF04607 Region found in RelA / SpoT proteins BV884_17270 PF13291 ACT domain BV884_17275 PF01042 Endoribonuclease L-PSP BV884_17280 PF04324 BFD-like [2Fe-2S] binding domain BV884_17285 PF00210 Ferritin-like domain BV884_17290 PF11846 Virulence factor membrane-bound polymerase, C-terminal BV884_17290 PF15864 Protein glycosylation ligase BV884_17290 PF04932 O-Antigen ligase BV884_17310 PF04536 TPM domain BV884_17315 PF04011 LemA family BV884_17325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BV884_17325 PF07992 Pyridine nucleotide-disulphide oxidoreductase BV884_17330 PF01493 GXGXG motif BV884_17330 PF01645 Conserved region in glutamate synthase BV884_17330 PF04898 Glutamate synthase central domain BV884_17330 PF00310 Glutamine amidotransferases class-II BV884_17340 PF01761 3-dehydroquinate synthase BV884_17345 PF01202 Shikimate kinase BV884_17350 PF11741 AMIN domain BV884_17350 PF07660 Secretin and TonB N terminus short domain BV884_17350 PF00263 Bacterial type II and III secretion system protein BV884_17350 PF03958 Bacterial type II/III secretion system short domain BV884_17375 PF17092 Penicillin-binding protein OB-like domain BV884_17375 PF00912 Transglycosylase BV884_17375 PF00905 Penicillin binding protein transpeptidase domain BV884_17380 PF13847 Methyltransferase domain BV884_17390 PF00953 Glycosyl transferase family 4 BV884_17395 PF02875 Mur ligase family, glutamate ligase domain BV884_17395 PF01225 Mur ligase family, catalytic domain BV884_17395 PF08245 Mur ligase middle domain BV884_17400 PF01225 Mur ligase family, catalytic domain BV884_17400 PF02875 Mur ligase family, glutamate ligase domain BV884_17400 PF08245 Mur ligase middle domain BV884_17405 PF03717 Penicillin-binding Protein dimerisation domain BV884_17405 PF00905 Penicillin binding protein transpeptidase domain BV884_17415 PF01795 MraW methylase family BV884_17430 PF00749 tRNA synthetases class I (E and Q), catalytic domain BV884_17445 PF00324 Amino acid permease BV884_17475 PF01545 Cation efflux family BV884_17480 PF00873 AcrB/AcrD/AcrF family BV884_17485 PF00529 HlyD membrane-fusion protein of T1SS BV884_17485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BV884_17500 PF04191 Phospholipid methyltransferase BV884_17525 PF00005 ABC transporter BV884_17525 PF12848 ABC transporter BV884_17530 PF01053 Cys/Met metabolism PLP-dependent enzyme BV884_17535 PF00106 short chain dehydrogenase BV884_17540 PF00916 Sulfate permease family BV884_17540 PF01740 STAS domain BV884_17545 PF00575 S1 RNA binding domain BV884_17545 PF09371 Tex-like protein N-terminal domain BV884_17545 PF16921 Tex protein YqgF-like domain BV884_17545 PF17674 HHH domain BV884_17550 PF00486 Transcriptional regulatory protein, C terminal BV884_17550 PF00072 Response regulator receiver domain BV884_17555 PF00672 HAMP domain BV884_17555 PF00512 His Kinase A (phospho-acceptor) domain BV884_17555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_17560 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BV884_17560 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BV884_17565 PF00583 Acetyltransferase (GNAT) family BV884_17585 PF00475 Imidazoleglycerol-phosphate dehydratase BV884_17590 PF00117 Glutamine amidotransferase class-I BV884_17605 PF00977 Histidine biosynthesis protein BV884_17620 PF03992 Antibiotic biosynthesis monooxygenase BV884_17635 PF01636 Phosphotransferase enzyme family BV884_17640 PF00977 Histidine biosynthesis protein BV884_17655 PF00230 Major intrinsic protein BV884_17680 PF02705 K+ potassium transporter BV884_17700 PF02525 Flavodoxin-like fold BV884_17740 PF00905 Penicillin binding protein transpeptidase domain BV884_17785 PF02311 AraC-like ligand binding domain BV884_17785 PF12833 Helix-turn-helix domain BV884_17790 PF00248 Aldo/keto reductase family BV884_17810 PF03466 LysR substrate binding domain BV884_17810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_17815 PF07690 Major Facilitator Superfamily BV884_17840 PF02678 Pirin BV884_17840 PF05726 Pirin C-terminal cupin domain BV884_17845 PF00857 Isochorismatase family BV884_17850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_17855 PF00171 Aldehyde dehydrogenase family BV884_17860 PF00202 Aminotransferase class-III BV884_17865 PF00392 Bacterial regulatory proteins, gntR family BV884_17865 PF00155 Aminotransferase class I and II BV884_17870 PF00324 Amino acid permease BV884_17880 PF03591 AzlC protein BV884_17890 PF00436 Single-strand binding protein family BV884_17895 PF07690 Major Facilitator Superfamily BV884_17905 PF08543 Phosphomethylpyrimidine kinase BV884_17905 PF02581 Thiamine monophosphate synthase BV884_17905 PF03070 TENA/THI-4/PQQC family BV884_17910 PF06942 GlpM protein BV884_17920 PF00107 Zinc-binding dehydrogenase BV884_17920 PF08240 Alcohol dehydrogenase GroES-like domain BV884_17925 PF00440 Bacterial regulatory proteins, tetR family BV884_17925 PF16925 Tetracyclin repressor-like, C-terminal domain BV884_17930 PF17760 UvrA interaction domain BV884_17930 PF17755 UvrA DNA-binding domain BV884_17930 PF00005 ABC transporter BV884_17940 PF00990 Diguanylate cyclase, GGDEF domain BV884_17940 PF17158 Membrane-associated sensor, integral membrane domain BV884_17950 PF02028 BCCT, betaine/carnitine/choline family transporter BV884_17960 PF00474 Sodium:solute symporter family BV884_17965 PF04341 Protein of unknown function, DUF485 BV884_17970 PF00672 HAMP domain BV884_17970 PF01627 Hpt domain BV884_17970 PF00512 His Kinase A (phospho-acceptor) domain BV884_17970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_17970 PF00072 Response regulator receiver domain BV884_17980 PF00196 Bacterial regulatory proteins, luxR family BV884_17980 PF00072 Response regulator receiver domain BV884_18000 PF03358 NADPH-dependent FMN reductase BV884_18005 PF00296 Luciferase-like monooxygenase BV884_18010 PF00872 Transposase, Mutator family BV884_18015 PF01037 Lrp/AsnC ligand binding domain BV884_18020 PF00857 Isochorismatase family BV884_18025 PF16177 Acetyl-coenzyme A synthetase N-terminus BV884_18025 PF13193 AMP-binding enzyme C-terminal domain BV884_18025 PF00501 AMP-binding enzyme BV884_18035 PF00924 Mechanosensitive ion channel BV884_18040 PF04452 RNA methyltransferase BV884_18045 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BV884_18050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BV884_18060 PF00472 RF-1 domain BV884_18060 PF03462 PCRF domain BV884_18070 PF17768 RecJ OB domain BV884_18070 PF02272 DHHA1 domain BV884_18070 PF01368 DHH family BV884_18075 PF01243 Pyridoxamine 5'-phosphate oxidase BV884_18075 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BV884_18080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BV884_18080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BV884_18080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BV884_18080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BV884_18085 PF00571 CBS domain BV884_18085 PF00478 IMP dehydrogenase / GMP reductase domain BV884_18090 PF03692 Putative zinc- or iron-chelating domain BV884_18095 PF00258 Flavodoxin BV884_18095 PF01613 Flavin reductase like domain BV884_18100 PF00593 TonB dependent receptor BV884_18100 PF07715 TonB-dependent Receptor Plug Domain BV884_18105 PF01169 Uncharacterized protein family UPF0016 BV884_18115 PF02817 e3 binding domain BV884_18115 PF00364 Biotin-requiring enzyme BV884_18115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BV884_18120 PF17831 Pyruvate dehydrogenase E1 component middle domain BV884_18120 PF00456 Transketolase, thiamine diphosphate binding domain BV884_18125 PF01551 Peptidase family M23 BV884_18135 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BV884_18140 PF12327 FtsZ family, C-terminal domain BV884_18140 PF00091 Tubulin/FtsZ family, GTPase domain BV884_18145 PF02491 SHS2 domain inserted in FTSA BV884_18150 PF03799 Cell division protein FtsQ BV884_18150 PF08478 POTRA domain, FtsQ-type BV884_18155 PF01820 D-ala D-ala ligase N-terminus BV884_18155 PF07478 D-ala D-ala ligase C-terminus BV884_18160 PF02875 Mur ligase family, glutamate ligase domain BV884_18160 PF01225 Mur ligase family, catalytic domain BV884_18160 PF08245 Mur ligase middle domain BV884_18165 PF04101 Glycosyltransferase family 28 C-terminal domain BV884_18165 PF03033 Glycosyltransferase family 28 N-terminal domain BV884_18170 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BV884_18170 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BV884_18180 PF07715 TonB-dependent Receptor Plug Domain BV884_18180 PF00593 TonB dependent receptor BV884_18185 PF00156 Phosphoribosyl transferase domain BV884_18190 PF03372 Endonuclease/Exonuclease/phosphatase family BV884_18195 PF03960 ArsC family BV884_18205 PF07859 alpha/beta hydrolase fold BV884_18210 PF07694 5TMR of 5TMR-LYT BV884_18210 PF00990 Diguanylate cyclase, GGDEF domain BV884_18215 PF02683 Cytochrome C biogenesis protein transmembrane region BV884_18215 PF11412 Disulphide bond corrector protein DsbC BV884_18245 PF00576 HIUase/Transthyretin family BV884_18250 PF00860 Permease family BV884_18260 PF01494 FAD binding domain BV884_18265 PF03561 Allantoicase repeat BV884_18270 PF04115 Ureidoglycolate lyase BV884_18275 PF00106 short chain dehydrogenase BV884_18280 PF00204 DNA gyrase B BV884_18280 PF01751 Toprim domain BV884_18280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_18280 PF00986 DNA gyrase B subunit, carboxyl terminus BV884_18285 PF05728 Uncharacterised protein family (UPF0227) BV884_18300 PF01476 LysM domain BV884_18300 PF00877 NlpC/P60 family BV884_18305 PF04717 Type VI secretion system, phage-baseplate injector BV884_18310 PF02600 Disulfide bond formation protein DsbB BV884_18315 PF04262 Glutamate-cysteine ligase BV884_18330 PF04286 Protein of unknown function (DUF445) BV884_18335 PF00155 Aminotransferase class I and II BV884_18340 PF01554 MatE BV884_18345 PF00106 short chain dehydrogenase BV884_18355 PF00486 Transcriptional regulatory protein, C terminal BV884_18355 PF00072 Response regulator receiver domain BV884_18360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BV884_18360 PF00512 His Kinase A (phospho-acceptor) domain BV884_18360 PF00989 PAS fold BV884_18360 PF11808 Phosphate regulon sensor protein PhoR BV884_18380 PF03069 Acetamidase/Formamidase family BV884_18385 PF02666 Phosphatidylserine decarboxylase BV884_18390 PF00581 Rhodanese-like domain BV884_18395 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BV884_18395 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BV884_18400 PF02580 D-Tyr-tRNA(Tyr) deacylase BV884_18430 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BV884_18430 PF00925 GTP cyclohydrolase II BV884_18435 PF00885 6,7-dimethyl-8-ribityllumazine synthase BV884_18440 PF01029 NusB family BV884_18445 PF00586 AIR synthase related protein, N-terminal domain BV884_18445 PF02769 AIR synthase related protein, C-terminal domain BV884_18450 PF04608 Phosphatidylglycerophosphatase A BV884_18455 PF14602 Hexapeptide repeat of succinyl-transferase BV884_18455 PF00132 Bacterial transferase hexapeptide (six repeats) BV884_18455 PF12804 MobA-like NTP transferase domain BV884_18460 PF01380 SIS domain BV884_18465 PF01177 Asp/Glu/Hydantoin racemase BV884_18480 PF00491 Arginase family BV884_18485 PF01979 Amidohydrolase family BV884_18490 PF00324 Amino acid permease BV884_18495 PF00221 Aromatic amino acid lyase BV884_18500 PF17391 Urocanase N-terminal domain BV884_18500 PF17392 Urocanase C-terminal domain BV884_18500 PF01175 Urocanase Rossmann-like domain BV884_18505 PF05962 HutD BV884_18510 PF07702 UTRA domain BV884_18510 PF00392 Bacterial regulatory proteins, gntR family BV884_18520 PF02492 CobW/HypB/UreG, nucleotide-binding domain BV884_18520 PF07683 Cobalamin synthesis protein cobW C-terminal domain BV884_18530 PF00324 Amino acid permease BV884_18540 PF14497 Glutathione S-transferase, C-terminal domain BV884_18540 PF02798 Glutathione S-transferase, N-terminal domain BV884_18545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BV884_18555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BV884_18560 PF04463 Protein of unknown function (DUF523) BV884_18565 PF01554 MatE BV884_18570 PF01758 Sodium Bile acid symporter family BV884_18575 PF00857 Isochorismatase family BV884_18580 PF00701 Dihydrodipicolinate synthetase family BV884_18590 PF01259 SAICAR synthetase BV884_18600 PF01226 Formate/nitrite transporter BV884_18605 PF00004 ATPase family associated with various cellular activities (AAA) BV884_18605 PF16193 AAA C-terminal domain BV884_18605 PF12002 MgsA AAA+ ATPase C terminal BV884_18610 PF07995 Glucose / Sorbosone dehydrogenase BV884_18615 PF03692 Putative zinc- or iron-chelating domain BV884_18620 PF07043 Protein of unknown function (DUF1328) BV884_18635 PF10576 Iron-sulfur binding domain of endonuclease III BV884_18635 PF14815 NUDIX domain BV884_18635 PF00730 HhH-GPD superfamily base excision DNA repair protein BV884_18635 PF00633 Helix-hairpin-helix motif BV884_18650 PF03352 Methyladenine glycosylase BV884_18655 PF00107 Zinc-binding dehydrogenase BV884_18655 PF08240 Alcohol dehydrogenase GroES-like domain BV884_18660 PF00392 Bacterial regulatory proteins, gntR family BV884_18660 PF00155 Aminotransferase class I and II BV884_18670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_18670 PF03466 LysR substrate binding domain BV884_18675 PF00248 Aldo/keto reductase family BV884_18680 PF07690 Major Facilitator Superfamily BV884_18690 PF01113 Dihydrodipicolinate reductase, N-terminus BV884_18690 PF05173 Dihydrodipicolinate reductase, C-terminus BV884_18700 PF01556 DnaJ C terminal domain BV884_18700 PF00684 DnaJ central domain BV884_18700 PF00226 DnaJ domain BV884_18710 PF00873 AcrB/AcrD/AcrF family BV884_18715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BV884_18720 PF08361 MAATS-type transcriptional repressor, C-terminal region BV884_18720 PF00440 Bacterial regulatory proteins, tetR family BV884_18725 PF00311 Phosphoenolpyruvate carboxylase BV884_18730 PF00860 Permease family BV884_18735 PF03466 LysR substrate binding domain BV884_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_18750 PF00920 Dehydratase family BV884_18755 PF00551 Formyl transferase BV884_18755 PF02911 Formyl transferase, C-terminal domain BV884_18760 PF01189 16S rRNA methyltransferase RsmB/F BV884_18760 PF01029 NusB family BV884_18770 PF00209 Sodium:neurotransmitter symporter family BV884_18810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BV884_18815 PF07859 alpha/beta hydrolase fold BV884_18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BV884_18835 PF03466 LysR substrate binding domain BV884_18840 PF01025 GrpE BV884_18845 PF00012 Hsp70 protein BV884_18865 PF13406 Transglycosylase SLT domain BV884_18870 PF02222 ATP-grasp domain BV884_18870 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BV884_18875 PF00731 AIR carboxylase BV884_18890 PF02875 Mur ligase family, glutamate ligase domain BV884_18890 PF08245 Mur ligase middle domain BV884_18890 PF01225 Mur ligase family, catalytic domain BV884_18900 PF01569 PAP2 superfamily BV884_18905 PF03741 Integral membrane protein TerC family BV884_18915 PF03738 Glutathionylspermidine synthase preATP-grasp BV884_18920 PF00355 Rieske [2Fe-2S] domain BV884_18925 PF01979 Amidohydrolase family BV884_18930 PF00156 Phosphoribosyl transferase domain BV884_18940 PF13098 Thioredoxin-like domain BV884_18940 PF10411 Disulfide bond isomerase protein N-terminus BV884_18945 PF16916 Dimerisation domain of Zinc Transporter BV884_18945 PF01545 Cation efflux family BV884_18950 PF02583 Metal-sensitive transcriptional repressor BV884_18955 PF01926 50S ribosome-binding GTPase BV884_18955 PF12631 MnmE helical domain BV884_18955 PF10396 GTP-binding protein TrmE N-terminus BV884_18960 PF14849 YidC periplasmic domain BV884_18960 PF02096 60Kd inner membrane protein BV884_18965 PF01809 Putative membrane protein insertion efficiency factor BV884_18970 PF00825 Ribonuclease P BV884_18975 PF00468 Ribosomal protein L34 BV884_19095 PF00239 Resolvase, N terminal domain BV884_19095 PF02796 Helix-turn-helix domain of resolvase BV884_19110 PF01464 Transglycosylase SLT domain BV884_19145 PF13098 Thioredoxin-like domain BV884_19145 PF10411 Disulfide bond isomerase protein N-terminus BV884_19180 PF06834 TraU protein BV884_19190 PF06986 Type-1V conjugative transfer system mating pair stabilisation BV884_19205 PF06122 Conjugative relaxosome accessory transposon protein BV884_19225 PF13438 Domain of unknown function (DUF4113) BV884_19225 PF00817 impB/mucB/samB family BV884_19225 PF11799 impB/mucB/samB family C-terminal domain BV884_19315 PF00565 Staphylococcal nuclease homologue BV884_19320 PF00816 H-NS histone family BV884_19375 PF13614 AAA domain BV884_19380 PF17762 HTH domain found in ParB protein BV884_19380 PF02195 ParB-like nuclease domain BV884_19395 PF05816 Toxic anion resistance protein (TelA)