locus-tag class description DYB08_00005 PF00743 Flavin-binding monooxygenase-like DYB08_00015 PF03969 AFG1-like ATPase DYB08_00020 PF01274 Malate synthase DYB08_00030 PF02472 Biopolymer transport protein ExbD/TolR DYB08_00035 PF02472 Biopolymer transport protein ExbD/TolR DYB08_00040 PF01618 MotA/TolQ/ExbB proton channel family DYB08_00050 PF07715 TonB-dependent Receptor Plug Domain DYB08_00050 PF00593 TonB dependent receptor DYB08_00070 PF01432 Peptidase family M3 DYB08_00075 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_00080 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_00085 PF00005 ABC transporter DYB08_00085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYB08_00100 PF00459 Inositol monophosphatase family DYB08_00110 PF01649 Ribosomal protein S20 DYB08_00115 PF13460 NAD(P)H-binding DYB08_00120 PF03737 Aldolase/RraA DYB08_00140 PF17757 UvrB interaction domain DYB08_00140 PF03461 TRCF domain DYB08_00140 PF00271 Helicase conserved C-terminal domain DYB08_00140 PF00270 DEAD/DEAH box helicase DYB08_00140 PF02559 CarD-like/TRCF domain DYB08_00150 PF00211 Adenylate and Guanylate cyclase catalytic domain DYB08_00155 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_00160 PF00012 Hsp70 protein DYB08_00165 PF00226 DnaJ domain DYB08_00165 PF07743 HSCB C-terminal oligomerisation domain DYB08_00170 PF01521 Iron-sulphur cluster biosynthesis DYB08_00175 PF01592 NifU-like N terminal domain DYB08_00180 PF00266 Aminotransferase class-V DYB08_00185 PF02082 Transcriptional regulator DYB08_00200 PF00216 Bacterial DNA-binding protein DYB08_00205 PF00639 PPIC-type PPIASE domain DYB08_00205 PF09312 SurA N-terminal domain DYB08_00210 PF12833 Helix-turn-helix domain DYB08_00210 PF12852 Cupin DYB08_00215 PF00487 Fatty acid desaturase DYB08_00220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_00220 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_00220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_00230 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_00230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_00230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_00240 PF03109 ABC1 family DYB08_00250 PF04073 Aminoacyl-tRNA editing domain DYB08_00255 PF04183 IucA / IucC family DYB08_00255 PF06276 Ferric iron reductase FhuF-like transporter DYB08_00260 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DYB08_00265 PF07690 Major Facilitator Superfamily DYB08_00270 PF06276 Ferric iron reductase FhuF-like transporter DYB08_00270 PF04183 IucA / IucC family DYB08_00275 PF06276 Ferric iron reductase FhuF-like transporter DYB08_00275 PF04183 IucA / IucC family DYB08_00290 PF07715 TonB-dependent Receptor Plug Domain DYB08_00290 PF00593 TonB dependent receptor DYB08_00330 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DYB08_00335 PF02277 Phosphoribosyltransferase DYB08_00350 PF02654 Cobalamin-5-phosphate synthase DYB08_00355 PF00793 DAHP synthetase I family DYB08_00360 PF01925 Sulfite exporter TauE/SafE DYB08_00395 PF02684 Lipid-A-disaccharide synthetase DYB08_00405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_00410 PF00005 ABC transporter DYB08_00445 PF01230 HIT domain DYB08_00475 PF08241 Methyltransferase domain DYB08_00480 PF00561 alpha/beta hydrolase fold DYB08_00485 PF01053 Cys/Met metabolism PLP-dependent enzyme DYB08_00495 PF02575 YbaB/EbfC DNA-binding family DYB08_00500 PF13662 Toprim domain DYB08_00500 PF02132 RecR protein DYB08_00505 PF01612 3'-5' exonuclease DYB08_00505 PF00570 HRDC domain DYB08_00525 PF05166 YcgL domain DYB08_00535 PF17862 AAA+ lid domain DYB08_00535 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_00535 PF01434 Peptidase family M41 DYB08_00545 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_00550 PF05175 Methyltransferase small domain DYB08_00555 PF01264 Chorismate synthase DYB08_00560 PF08448 PAS fold DYB08_00560 PF00990 Diguanylate cyclase, GGDEF domain DYB08_00575 PF04055 Radical SAM superfamily DYB08_00580 PF00676 Dehydrogenase E1 component DYB08_00585 PF02779 Transketolase, pyrimidine binding domain DYB08_00585 PF02780 Transketolase, C-terminal domain DYB08_00590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYB08_00590 PF00364 Biotin-requiring enzyme DYB08_00590 PF02817 e3 binding domain DYB08_00595 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_00595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYB08_00600 PF00106 short chain dehydrogenase DYB08_00605 PF00107 Zinc-binding dehydrogenase DYB08_00605 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_00610 PF01062 Bestrophin, RFP-TM, chloride channel DYB08_00615 PF00158 Sigma-54 interaction domain DYB08_00615 PF00072 Response regulator receiver domain DYB08_00615 PF02954 Bacterial regulatory protein, Fis family DYB08_00620 PF00753 Metallo-beta-lactamase superfamily DYB08_00620 PF04273 Putative phosphatase (DUF442) DYB08_00625 PF04273 Putative phosphatase (DUF442) DYB08_00625 PF00753 Metallo-beta-lactamase superfamily DYB08_00630 PF01925 Sulfite exporter TauE/SafE DYB08_00645 PF06445 GyrI-like small molecule binding domain DYB08_00645 PF12833 Helix-turn-helix domain DYB08_00650 PF01638 HxlR-like helix-turn-helix DYB08_00655 PF02525 Flavodoxin-like fold DYB08_00680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DYB08_00685 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_00690 PF00005 ABC transporter DYB08_00705 PF00083 Sugar (and other) transporter DYB08_00710 PF07715 TonB-dependent Receptor Plug Domain DYB08_00710 PF00593 TonB dependent receptor DYB08_00715 PF00206 Lyase DYB08_00715 PF10415 Fumarase C C-terminus DYB08_00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_00730 PF03466 LysR substrate binding domain DYB08_00735 PF03466 LysR substrate binding domain DYB08_00735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_00740 PF00108 Thiolase, N-terminal domain DYB08_00740 PF02803 Thiolase, C-terminal domain DYB08_00745 PF02667 Short chain fatty acid transporter DYB08_00750 PF01144 Coenzyme A transferase DYB08_00755 PF01144 Coenzyme A transferase DYB08_00760 PF03466 LysR substrate binding domain DYB08_00760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_00790 PF12833 Helix-turn-helix domain DYB08_00790 PF06719 AraC-type transcriptional regulator N-terminus DYB08_00795 PF07690 Major Facilitator Superfamily DYB08_00800 PF01738 Dienelactone hydrolase family DYB08_00815 PF01613 Flavin reductase like domain DYB08_00825 PF12833 Helix-turn-helix domain DYB08_00825 PF14525 AraC-binding-like domain DYB08_00830 PF00175 Oxidoreductase NAD-binding domain DYB08_00830 PF00970 Oxidoreductase FAD-binding domain DYB08_00830 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_00835 PF00866 Ring hydroxylating beta subunit DYB08_00840 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DYB08_00840 PF00355 Rieske [2Fe-2S] domain DYB08_00845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_00845 PF03459 TOBE domain DYB08_00855 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_00860 PF00005 ABC transporter DYB08_00860 PF03459 TOBE domain DYB08_00865 PF00106 short chain dehydrogenase DYB08_00870 PF00550 Phosphopantetheine attachment site DYB08_00870 PF00857 Isochorismatase family DYB08_00880 PF00149 Calcineurin-like phosphoesterase DYB08_00885 PF13089 Polyphosphate kinase N-terminal domain DYB08_00885 PF02503 Polyphosphate kinase middle domain DYB08_00885 PF17941 Polyphosphate kinase C-terminal domain 1 DYB08_00885 PF13090 Polyphosphate kinase C-terminal domain 2 DYB08_00890 PF08042 PqqA family DYB08_00895 PF12706 Beta-lactamase superfamily domain DYB08_00900 PF03070 TENA/THI-4/PQQC family DYB08_00905 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DYB08_00910 PF13186 Iron-sulfur cluster-binding domain DYB08_00910 PF04055 Radical SAM superfamily DYB08_00915 PF01244 Membrane dipeptidase (Peptidase family M19) DYB08_00935 PF13091 PLD-like domain DYB08_00950 PF00199 Catalase DYB08_00960 PF00107 Zinc-binding dehydrogenase DYB08_00960 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_00970 PF00419 Fimbrial protein DYB08_00975 PF13954 PapC N-terminal domain DYB08_00975 PF00577 Outer membrane usher protein DYB08_00975 PF13953 PapC C-terminal domain DYB08_00980 PF02753 Pili assembly chaperone PapD, C-terminal domain DYB08_00980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DYB08_00990 PF16970 Type-1 fimbrial protein, A DYB08_01010 PF01266 FAD dependent oxidoreductase DYB08_01030 PF01593 Flavin containing amine oxidoreductase DYB08_01035 PF00743 Flavin-binding monooxygenase-like DYB08_01040 PF12146 Serine aminopeptidase, S33 DYB08_01045 PF02321 Outer membrane efflux protein DYB08_01050 PF00873 AcrB/AcrD/AcrF family DYB08_01055 PF00529 HlyD membrane-fusion protein of T1SS DYB08_01055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_01075 PF00072 Response regulator receiver domain DYB08_01075 PF00486 Transcriptional regulatory protein, C terminal DYB08_01080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_01080 PF16527 Two-component sensor protein CpxA, periplasmic domain DYB08_01080 PF00672 HAMP domain DYB08_01080 PF00512 His Kinase A (phospho-acceptor) domain DYB08_01090 PF12833 Helix-turn-helix domain DYB08_01090 PF02311 AraC-like ligand binding domain DYB08_01095 PF12146 Serine aminopeptidase, S33 DYB08_01150 PF13291 ACT domain DYB08_01150 PF02824 TGS domain DYB08_01150 PF04607 Region found in RelA / SpoT proteins DYB08_01160 PF01975 Survival protein SurE DYB08_01185 PF07690 Major Facilitator Superfamily DYB08_01190 PF13533 Biotin-lipoyl like DYB08_01195 PF01425 Amidase DYB08_01200 PF00196 Bacterial regulatory proteins, luxR family DYB08_01275 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DYB08_01280 PF14572 Phosphoribosyl synthetase-associated domain DYB08_01280 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DYB08_01300 PF00005 ABC transporter DYB08_01315 PF00107 Zinc-binding dehydrogenase DYB08_01315 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_01330 PF12833 Helix-turn-helix domain DYB08_01330 PF06719 AraC-type transcriptional regulator N-terminus DYB08_01335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYB08_01335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYB08_01340 PF07690 Major Facilitator Superfamily DYB08_01345 PF00920 Dehydratase family DYB08_01350 PF00392 Bacterial regulatory proteins, gntR family DYB08_01350 PF07729 FCD domain DYB08_01360 PF03466 LysR substrate binding domain DYB08_01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_01365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DYB08_01365 PF13378 Enolase C-terminal domain-like DYB08_01370 PF02426 Muconolactone delta-isomerase DYB08_01375 PF04444 Catechol dioxygenase N terminus DYB08_01375 PF00775 Dioxygenase DYB08_01380 PF01144 Coenzyme A transferase DYB08_01385 PF01144 Coenzyme A transferase DYB08_01390 PF02803 Thiolase, C-terminal domain DYB08_01390 PF00108 Thiolase, N-terminal domain DYB08_01395 PF12146 Serine aminopeptidase, S33 DYB08_01400 PF01804 Penicillin amidase DYB08_01405 PF00171 Aldehyde dehydrogenase family DYB08_01415 PF07833 Copper amine oxidase N-terminal domain DYB08_01415 PF02727 Copper amine oxidase, N2 domain DYB08_01415 PF02728 Copper amine oxidase, N3 domain DYB08_01415 PF01179 Copper amine oxidase, enzyme domain DYB08_01420 PF02311 AraC-like ligand binding domain DYB08_01420 PF12833 Helix-turn-helix domain DYB08_01425 PF01613 Flavin reductase like domain DYB08_01430 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_01430 PF00175 Oxidoreductase NAD-binding domain DYB08_01445 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DYB08_01445 PF00355 Rieske [2Fe-2S] domain DYB08_01460 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_01465 PF01425 Amidase DYB08_01475 PF07690 Major Facilitator Superfamily DYB08_01485 PF00106 short chain dehydrogenase DYB08_01500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_01500 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_01500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_01520 PF01614 Bacterial transcriptional regulator DYB08_01520 PF09339 IclR helix-turn-helix domain DYB08_01525 PF00753 Metallo-beta-lactamase superfamily DYB08_01535 PF04143 Sulphur transport DYB08_01545 PF13360 PQQ-like domain DYB08_01545 PF01011 PQQ enzyme repeat DYB08_01550 PF04966 Carbohydrate-selective porin, OprB family DYB08_01555 PF05048 Periplasmic copper-binding protein (NosD) DYB08_01560 PF01487 Type I 3-dehydroquinase DYB08_01565 PF00775 Dioxygenase DYB08_01570 PF00775 Dioxygenase DYB08_01570 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DYB08_01575 PF02627 Carboxymuconolactone decarboxylase family DYB08_01580 PF07690 Major Facilitator Superfamily DYB08_01585 PF00561 alpha/beta hydrolase fold DYB08_01590 PF10397 Adenylosuccinate lyase C-terminus DYB08_01590 PF00206 Lyase DYB08_01595 PF02803 Thiolase, C-terminal domain DYB08_01595 PF00108 Thiolase, N-terminal domain DYB08_01600 PF01144 Coenzyme A transferase DYB08_01605 PF01144 Coenzyme A transferase DYB08_01610 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DYB08_01615 PF04977 Septum formation initiator DYB08_01620 PF04239 Protein of unknown function (DUF421) DYB08_01625 PF03952 Enolase, N-terminal domain DYB08_01625 PF00113 Enolase, C-terminal TIM barrel domain DYB08_01630 PF00793 DAHP synthetase I family DYB08_01635 PF06418 CTP synthase N-terminus DYB08_01635 PF00117 Glutamine amidotransferase class-I DYB08_01665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_01665 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_01680 PF00793 DAHP synthetase I family DYB08_01685 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DYB08_01690 PF10431 C-terminal, D2-small domain, of ClpB protein DYB08_01690 PF17871 AAA lid domain DYB08_01690 PF02861 Clp amino terminal domain, pathogenicity island component DYB08_01690 PF07724 AAA domain (Cdc48 subfamily) DYB08_01690 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_01695 PF02617 ATP-dependent Clp protease adaptor protein ClpS DYB08_01705 PF01118 Semialdehyde dehydrogenase, NAD binding domain DYB08_01705 PF02774 Semialdehyde dehydrogenase, dimerisation domain DYB08_01720 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DYB08_01725 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_01725 PF00585 C-terminal regulatory domain of Threonine dehydratase DYB08_01730 PF02080 TrkA-C domain DYB08_01730 PF02254 TrkA-N domain DYB08_01735 PF02386 Cation transport protein DYB08_01740 PF02253 Phospholipase A1 DYB08_01745 PF08367 Peptidase M16C associated DYB08_01745 PF00675 Insulinase (Peptidase family M16) DYB08_01745 PF05193 Peptidase M16 inactive domain DYB08_01750 PF07715 TonB-dependent Receptor Plug Domain DYB08_01750 PF00593 TonB dependent receptor DYB08_01755 PF00294 pfkB family carbohydrate kinase DYB08_01765 PF07290 Protein of unknown function (DUF1449) DYB08_01780 PF01654 Cytochrome bd terminal oxidase subunit I DYB08_01785 PF02322 Cytochrome bd terminal oxidase subunit II DYB08_01790 PF08173 Membrane bound YbgT-like protein DYB08_01805 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DYB08_01815 PF02881 SRP54-type protein, helical bundle domain DYB08_01815 PF00448 SRP54-type protein, GTPase domain DYB08_01840 PF00571 CBS domain DYB08_01840 PF00478 IMP dehydrogenase / GMP reductase domain DYB08_01845 PF00202 Aminotransferase class-III DYB08_01850 PF00462 Glutaredoxin DYB08_01860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_01860 PF03466 LysR substrate binding domain DYB08_01865 PF00557 Metallopeptidase family M24 DYB08_01870 PF05525 Branched-chain amino acid transport protein DYB08_01895 PF00381 PTS HPr component phosphorylation site DYB08_01895 PF02896 PEP-utilising enzyme, TIM barrel domain DYB08_01895 PF00391 PEP-utilising enzyme, mobile domain DYB08_01895 PF05524 PEP-utilising enzyme, N-terminal DYB08_01895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYB08_01900 PF00294 pfkB family carbohydrate kinase DYB08_01905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DYB08_01905 PF02378 Phosphotransferase system, EIIC DYB08_01925 PF00563 EAL domain DYB08_01925 PF00990 Diguanylate cyclase, GGDEF domain DYB08_01925 PF03707 Bacterial signalling protein N terminal repeat DYB08_01935 PF07995 Glucose / Sorbosone dehydrogenase DYB08_01940 PF02586 SOS response associated peptidase (SRAP) DYB08_01945 PF00916 Sulfate permease family DYB08_01945 PF01740 STAS domain DYB08_01950 PF05922 Peptidase inhibitor I9 DYB08_01950 PF00082 Subtilase family DYB08_01960 PF00324 Amino acid permease DYB08_01965 PF00266 Aminotransferase class-V DYB08_01970 PF01037 Lrp/AsnC ligand binding domain DYB08_01995 PF13419 Haloacid dehalogenase-like hydrolase DYB08_02000 PF01479 S4 domain DYB08_02005 PF00154 recA bacterial DNA recombination protein DYB08_02010 PF02631 RecX family DYB08_02025 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DYB08_02025 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_02030 PF07977 FabA-like domain DYB08_02035 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_02035 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DYB08_02045 PF01103 Surface antigen DYB08_02045 PF07244 Surface antigen variable number repeat DYB08_02050 PF02163 Peptidase family M50 DYB08_02050 PF17820 PDZ domain DYB08_02050 PF13180 PDZ domain DYB08_02055 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DYB08_02055 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DYB08_02055 PF13288 DXP reductoisomerase C-terminal domain DYB08_02065 PF01255 Putative undecaprenyl diphosphate synthase DYB08_02070 PF01765 Ribosome recycling factor DYB08_02075 PF00696 Amino acid kinase family DYB08_02080 PF04055 Radical SAM superfamily DYB08_02080 PF18693 TRAM domain DYB08_02080 PF00919 Uncharacterized protein family UPF0004 DYB08_02085 PF00512 His Kinase A (phospho-acceptor) domain DYB08_02085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_02085 PF00989 PAS fold DYB08_02090 PF00072 Response regulator receiver domain DYB08_02090 PF02954 Bacterial regulatory protein, Fis family DYB08_02090 PF00158 Sigma-54 interaction domain DYB08_02095 PF00440 Bacterial regulatory proteins, tetR family DYB08_02100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYB08_02100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYB08_02110 PF02542 YgbB family DYB08_02120 PF01266 FAD dependent oxidoreductase DYB08_02145 PF10415 Fumarase C C-terminus DYB08_02145 PF00206 Lyase DYB08_02150 PF16363 GDP-mannose 4,6 dehydratase DYB08_02155 PF02635 DsrE/DsrF-like family DYB08_02175 PF00892 EamA-like transporter family DYB08_02180 PF00392 Bacterial regulatory proteins, gntR family DYB08_02180 PF00155 Aminotransferase class I and II DYB08_02185 PF01638 HxlR-like helix-turn-helix DYB08_02190 PF00994 Probable molybdopterin binding domain DYB08_02190 PF03454 MoeA C-terminal region (domain IV) DYB08_02190 PF03453 MoeA N-terminal region (domain I and II) DYB08_02195 PF00994 Probable molybdopterin binding domain DYB08_02195 PF01967 MoaC family DYB08_02200 PF02391 MoaE protein DYB08_02210 PF06463 Molybdenum Cofactor Synthesis C DYB08_02210 PF04055 Radical SAM superfamily DYB08_02215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DYB08_02215 PF00384 Molybdopterin oxidoreductase DYB08_02215 PF01568 Molydopterin dinucleotide binding domain DYB08_02220 PF12804 MobA-like NTP transferase domain DYB08_02225 PF01568 Molydopterin dinucleotide binding domain DYB08_02225 PF00384 Molybdopterin oxidoreductase DYB08_02225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DYB08_02225 PF04324 BFD-like [2Fe-2S] binding domain DYB08_02230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DYB08_02230 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_02230 PF18267 Rubredoxin NAD+ reductase C-terminal domain DYB08_02230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYB08_02230 PF04324 BFD-like [2Fe-2S] binding domain DYB08_02235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYB08_02235 PF04324 BFD-like [2Fe-2S] binding domain DYB08_02235 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_02235 PF13806 Rieske-like [2Fe-2S] domain DYB08_02235 PF18267 Rubredoxin NAD+ reductase C-terminal domain DYB08_02235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DYB08_02245 PF00486 Transcriptional regulatory protein, C terminal DYB08_02245 PF00072 Response regulator receiver domain DYB08_02250 PF00005 ABC transporter DYB08_02260 PF13438 Domain of unknown function (DUF4113) DYB08_02260 PF11799 impB/mucB/samB family C-terminal domain DYB08_02260 PF00817 impB/mucB/samB family DYB08_02265 PF01220 Dehydroquinase class II DYB08_02270 PF00364 Biotin-requiring enzyme DYB08_02275 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_02275 PF00289 Biotin carboxylase, N-terminal domain DYB08_02275 PF02785 Biotin carboxylase C-terminal domain DYB08_02285 PF12832 MFS_1 like family DYB08_02625 PF01645 Conserved region in glutamate synthase DYB08_02640 PF01565 FAD binding domain DYB08_02640 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DYB08_02645 PF01451 Low molecular weight phosphotyrosine protein phosphatase DYB08_02655 PF00465 Iron-containing alcohol dehydrogenase DYB08_02660 PF03061 Thioesterase superfamily DYB08_02665 PF04185 Phosphoesterase family DYB08_02665 PF05506 Domain of unknown function (DUF756) DYB08_02670 PF12170 DNA polymerase III tau subunit V interacting with alpha DYB08_02670 PF12169 DNA polymerase III subunits gamma and tau domain III DYB08_02670 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DYB08_02675 PF07690 Major Facilitator Superfamily DYB08_02700 PF00108 Thiolase, N-terminal domain DYB08_02700 PF02803 Thiolase, C-terminal domain DYB08_02710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_02710 PF03466 LysR substrate binding domain DYB08_02720 PF01810 LysE type translocator DYB08_02725 PF01037 Lrp/AsnC ligand binding domain DYB08_02730 PF03594 Benzoate membrane transport protein DYB08_02735 PF02308 MgtC family DYB08_02740 PF00689 Cation transporting ATPase, C-terminus DYB08_02740 PF00690 Cation transporter/ATPase, N-terminus DYB08_02755 PF00665 Integrase core domain DYB08_02780 PF00809 Pterin binding enzyme DYB08_02785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_02785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_02785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_02785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_02800 PF00665 Integrase core domain DYB08_02840 PF00582 Universal stress protein family DYB08_02845 PF01740 STAS domain DYB08_02845 PF00916 Sulfate permease family DYB08_02855 PF07690 Major Facilitator Superfamily DYB08_02860 PF00440 Bacterial regulatory proteins, tetR family DYB08_02860 PF02909 Tetracyclin repressor-like, C-terminal domain DYB08_02885 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DYB08_02890 PF01636 Phosphotransferase enzyme family DYB08_02925 PF00582 Universal stress protein family DYB08_02930 PF00005 ABC transporter DYB08_02930 PF12848 ABC transporter DYB08_02950 PF07715 TonB-dependent Receptor Plug Domain DYB08_02950 PF00593 TonB dependent receptor DYB08_02980 PF00924 Mechanosensitive ion channel DYB08_02985 PF00593 TonB dependent receptor DYB08_02985 PF07715 TonB-dependent Receptor Plug Domain DYB08_02990 PF00440 Bacterial regulatory proteins, tetR family DYB08_03005 PF01037 Lrp/AsnC ligand binding domain DYB08_03010 PF01817 Chorismate mutase type II DYB08_03020 PF00106 short chain dehydrogenase DYB08_03030 PF01433 Peptidase family M1 domain DYB08_03030 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DYB08_03030 PF11940 Domain of unknown function (DUF3458) Ig-like fold DYB08_03045 PF02110 Hydroxyethylthiazole kinase family DYB08_03050 PF06445 GyrI-like small molecule binding domain DYB08_03060 PF05970 PIF1-like helicase DYB08_03060 PF14493 Helix-turn-helix domain DYB08_03065 PF00465 Iron-containing alcohol dehydrogenase DYB08_03080 PF00171 Aldehyde dehydrogenase family DYB08_03085 PF13520 Amino acid permease DYB08_03090 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DYB08_03095 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DYB08_03100 PF00117 Glutamine amidotransferase class-I DYB08_03100 PF00958 GMP synthase C terminal domain DYB08_03100 PF02540 NAD synthase DYB08_03105 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYB08_03105 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DYB08_03110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DYB08_03115 PF00149 Calcineurin-like phosphoesterase DYB08_03125 PF00881 Nitroreductase family DYB08_03135 PF17209 Hfq protein DYB08_03145 PF01119 DNA mismatch repair protein, C-terminal domain DYB08_03145 PF08676 MutL C terminal dimerisation domain DYB08_03150 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DYB08_03155 PF00849 RNA pseudouridylate synthase DYB08_03155 PF01479 S4 domain DYB08_03170 PF01479 S4 domain DYB08_03170 PF00849 RNA pseudouridylate synthase DYB08_03180 PF04284 Protein of unknown function (DUF441) DYB08_03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_03185 PF03466 LysR substrate binding domain DYB08_03200 PF07690 Major Facilitator Superfamily DYB08_03205 PF00027 Cyclic nucleotide-binding domain DYB08_03205 PF00520 Ion transport protein DYB08_03215 PF11791 Aconitate B N-terminal domain DYB08_03215 PF06434 Aconitate hydratase 2 N-terminus DYB08_03215 PF00330 Aconitase family (aconitate hydratase) DYB08_03235 PF17243 POTRA domain TamA domain 1 DYB08_03235 PF01103 Surface antigen DYB08_03235 PF07244 Surface antigen variable number repeat DYB08_03240 PF07690 Major Facilitator Superfamily DYB08_03245 PF03232 Ubiquinone biosynthesis protein COQ7 DYB08_03260 PF00120 Glutamine synthetase, catalytic domain DYB08_03265 PF00072 Response regulator receiver domain DYB08_03265 PF00486 Transcriptional regulatory protein, C terminal DYB08_03270 PF13493 Domain of unknown function (DUF4118) DYB08_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_03270 PF00512 His Kinase A (phospho-acceptor) domain DYB08_03270 PF02702 Osmosensitive K+ channel His kinase sensor domain DYB08_03275 PF02669 K+-transporting ATPase, c chain DYB08_03285 PF03814 Potassium-transporting ATPase A subunit DYB08_03300 PF03109 ABC1 family DYB08_03305 PF00899 ThiF family DYB08_03310 PF01613 Flavin reductase like domain DYB08_03315 PF13193 AMP-binding enzyme C-terminal domain DYB08_03315 PF00501 AMP-binding enzyme DYB08_03320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_03320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_03320 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_03325 PF00106 short chain dehydrogenase DYB08_03330 PF12833 Helix-turn-helix domain DYB08_03335 PF09084 NMT1/THI5 like DYB08_03340 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_03345 PF17827 PrmC N-terminal domain DYB08_03345 PF13847 Methyltransferase domain DYB08_03350 PF00472 RF-1 domain DYB08_03350 PF03462 PCRF domain DYB08_03360 PF03466 LysR substrate binding domain DYB08_03360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_03380 PF00296 Luciferase-like monooxygenase DYB08_03390 PF13994 PgaD-like protein DYB08_03395 PF00535 Glycosyl transferase family 2 DYB08_03400 PF14883 Hypothetical glycosyl hydrolase family 13 DYB08_03400 PF01522 Polysaccharide deacetylase DYB08_03410 PF03618 Kinase/pyrophosphorylase DYB08_03415 PF02896 PEP-utilising enzyme, TIM barrel domain DYB08_03415 PF00391 PEP-utilising enzyme, mobile domain DYB08_03415 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DYB08_03425 PF06481 COX Aromatic Rich Motif DYB08_03425 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DYB08_03430 PF00115 Cytochrome C and Quinol oxidase polypeptide I DYB08_03435 PF00510 Cytochrome c oxidase subunit III DYB08_03440 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DYB08_03445 PF01040 UbiA prenyltransferase family DYB08_03450 PF01250 Ribosomal protein S6 DYB08_03455 PF01084 Ribosomal protein S18 DYB08_03460 PF01281 Ribosomal protein L9, N-terminal domain DYB08_03460 PF03948 Ribosomal protein L9, C-terminal domain DYB08_03465 PF00772 DnaB-like helicase N terminal domain DYB08_03465 PF03796 DnaB-like helicase C terminal domain DYB08_03470 PF00842 Alanine racemase, C-terminal domain DYB08_03470 PF01168 Alanine racemase, N-terminal domain DYB08_03480 PF08379 Bacterial transglutaminase-like N-terminal region DYB08_03480 PF01841 Transglutaminase-like superfamily DYB08_03490 PF14403 Circularly permuted ATP-grasp type 2 DYB08_03500 PF01134 Glucose inhibited division protein A DYB08_03500 PF13932 GidA associated domain DYB08_03520 PF02954 Bacterial regulatory protein, Fis family DYB08_03525 PF01808 AICARFT/IMPCHase bienzyme DYB08_03525 PF02142 MGS-like domain DYB08_03530 PF02844 Phosphoribosylglycinamide synthetase, N domain DYB08_03530 PF02843 Phosphoribosylglycinamide synthetase, C domain DYB08_03530 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DYB08_03535 PF03180 NLPA lipoprotein DYB08_03540 PF00005 ABC transporter DYB08_03540 PF09383 NIL domain DYB08_03545 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_03550 PF16123 Hydroxyacylglutathione hydrolase C-terminus DYB08_03550 PF00753 Metallo-beta-lactamase superfamily DYB08_03560 PF00375 Sodium:dicarboxylate symporter family DYB08_03580 PF07995 Glucose / Sorbosone dehydrogenase DYB08_03585 PF00892 EamA-like transporter family DYB08_03590 PF01177 Asp/Glu/Hydantoin racemase DYB08_03600 PF02470 MlaD protein DYB08_03605 PF04403 Paraquat-inducible protein A DYB08_03615 PF06826 Predicted Permease Membrane Region DYB08_03615 PF02080 TrkA-C domain DYB08_03620 PF00155 Aminotransferase class I and II DYB08_03645 PF08946 Osmosensory transporter coiled coil DYB08_03645 PF00083 Sugar (and other) transporter DYB08_03700 PF00392 Bacterial regulatory proteins, gntR family DYB08_03700 PF07729 FCD domain DYB08_03710 PF03616 Sodium/glutamate symporter DYB08_03715 PF00561 alpha/beta hydrolase fold DYB08_03745 PF04076 Bacterial OB fold (BOF) protein DYB08_03775 PF00324 Amino acid permease DYB08_03780 PF00171 Aldehyde dehydrogenase family DYB08_03785 PF00202 Aminotransferase class-III DYB08_03790 PF03466 LysR substrate binding domain DYB08_03790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_03815 PF00069 Protein kinase domain DYB08_03835 PF00814 Glycoprotease family DYB08_03840 PF01165 Ribosomal protein S21 DYB08_03845 PF09424 Yqey-like protein DYB08_03850 PF01435 Peptidase family M48 DYB08_03855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYB08_03855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYB08_03870 PF00156 Phosphoribosyl transferase domain DYB08_03875 PF02674 Colicin V production protein DYB08_03880 PF01180 Dihydroorotate dehydrogenase DYB08_03900 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DYB08_03900 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DYB08_03905 PF00881 Nitroreductase family DYB08_03915 PF00270 DEAD/DEAH box helicase DYB08_03915 PF00271 Helicase conserved C-terminal domain DYB08_03920 PF00313 'Cold-shock' DNA-binding domain DYB08_03930 PF04542 Sigma-70 region 2 DYB08_03930 PF04545 Sigma-70, region 4 DYB08_03930 PF00140 Sigma-70 factor, region 1.2 DYB08_03935 PF04241 Protein of unknown function (DUF423) DYB08_03945 PF05690 Thiazole biosynthesis protein ThiG DYB08_03955 PF03883 Peroxide stress protein YaaA DYB08_03965 PF12706 Beta-lactamase superfamily domain DYB08_03970 PF07687 Peptidase dimerisation domain DYB08_03970 PF01546 Peptidase family M20/M25/M40 DYB08_03980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYB08_03985 PF00800 Prephenate dehydratase DYB08_03985 PF01842 ACT domain DYB08_03985 PF01817 Chorismate mutase type II DYB08_03990 PF00756 Putative esterase DYB08_03995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_03995 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_03995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_04000 PF00375 Sodium:dicarboxylate symporter family DYB08_04010 PF02885 Glycosyl transferase family, helical bundle domain DYB08_04010 PF00591 Glycosyl transferase family, a/b domain DYB08_04015 PF07023 Protein of unknown function (DUF1315) DYB08_04020 PF01513 ATP-NAD kinase DYB08_04025 PF00905 Penicillin binding protein transpeptidase domain DYB08_04025 PF00912 Transglycosylase DYB08_04025 PF14814 Bifunctional transglycosylase second domain DYB08_04035 PF00293 NUDIX domain DYB08_04045 PF08521 Two-component sensor kinase N-terminal DYB08_04045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_04045 PF00512 His Kinase A (phospho-acceptor) domain DYB08_04050 PF00486 Transcriptional regulatory protein, C terminal DYB08_04050 PF00072 Response regulator receiver domain DYB08_04065 PF00437 Type II/IV secretion system protein DYB08_04075 PF01980 tRNA-methyltransferase O DYB08_04075 PF18389 TrmO C-terminal domain DYB08_04080 PF00970 Oxidoreductase FAD-binding domain DYB08_04080 PF00175 Oxidoreductase NAD-binding domain DYB08_04085 PF02567 Phenazine biosynthesis-like protein DYB08_04090 PF00392 Bacterial regulatory proteins, gntR family DYB08_04090 PF00155 Aminotransferase class I and II DYB08_04100 PF00037 4Fe-4S binding domain DYB08_04105 PF00893 Small Multidrug Resistance protein DYB08_04110 PF00005 ABC transporter DYB08_04115 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_04120 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_04125 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_04145 PF13533 Biotin-lipoyl like DYB08_04150 PF00873 AcrB/AcrD/AcrF family DYB08_04155 PF02321 Outer membrane efflux protein DYB08_04160 PF00464 Serine hydroxymethyltransferase DYB08_04200 PF00005 ABC transporter DYB08_04205 PF01061 ABC-2 type transporter DYB08_04210 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DYB08_04210 PF14489 QueF-like protein DYB08_04220 PF01098 Cell cycle protein DYB08_04225 PF13406 Transglycosylase SLT domain DYB08_04230 PF05036 Sporulation related domain DYB08_04230 PF03330 Lytic transglycolase DYB08_04250 PF12833 Helix-turn-helix domain DYB08_04260 PF00889 Elongation factor TS DYB08_04265 PF00318 Ribosomal protein S2 DYB08_04270 PF00557 Metallopeptidase family M24 DYB08_04280 PF07690 Major Facilitator Superfamily DYB08_04290 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_04290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYB08_04295 PF04055 Radical SAM superfamily DYB08_04300 PF09317 Domain of unknown function (DUF1974) DYB08_04300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_04300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_04315 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DYB08_04315 PF05221 S-adenosyl-L-homocysteine hydrolase DYB08_04320 PF02219 Methylenetetrahydrofolate reductase DYB08_04325 PF04452 RNA methyltransferase DYB08_04330 PF00990 Diguanylate cyclase, GGDEF domain DYB08_04330 PF03707 Bacterial signalling protein N terminal repeat DYB08_04330 PF00563 EAL domain DYB08_04335 PF01515 Phosphate acetyl/butaryl transferase DYB08_04335 PF03949 Malic enzyme, NAD binding domain DYB08_04335 PF00390 Malic enzyme, N-terminal domain DYB08_04340 PF12627 Probable RNA and SrmB- binding site of polymerase A DYB08_04340 PF01743 Poly A polymerase head domain DYB08_04345 PF13180 PDZ domain DYB08_04350 PF01784 NIF3 (NGG1p interacting factor 3) DYB08_04355 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DYB08_04355 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DYB08_04390 PF01040 UbiA prenyltransferase family DYB08_04395 PF04345 Chorismate lyase DYB08_04405 PF00854 POT family DYB08_04415 PF00117 Glutamine amidotransferase class-I DYB08_04420 PF01433 Peptidase family M1 domain DYB08_04420 PF11838 ERAP1-like C-terminal domain DYB08_04425 PF07715 TonB-dependent Receptor Plug Domain DYB08_04425 PF00593 TonB dependent receptor DYB08_04435 PF02885 Glycosyl transferase family, helical bundle domain DYB08_04435 PF00591 Glycosyl transferase family, a/b domain DYB08_04440 PF00218 Indole-3-glycerol phosphate synthase DYB08_04455 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DYB08_04455 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DYB08_04460 PF01799 [2Fe-2S] binding domain DYB08_04460 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_04475 PF00144 Beta-lactamase DYB08_04490 PF05675 Protein of unknown function (DUF817) DYB08_04495 PF01208 Uroporphyrinogen decarboxylase (URO-D) DYB08_04505 PF00425 chorismate binding enzyme DYB08_04515 PF00975 Thioesterase domain DYB08_04520 PF00005 ABC transporter DYB08_04520 PF00664 ABC transporter transmembrane region DYB08_04525 PF00005 ABC transporter DYB08_04525 PF00664 ABC transporter transmembrane region DYB08_04535 PF00282 Pyridoxal-dependent decarboxylase conserved domain DYB08_04540 PF00857 Isochorismatase family DYB08_04540 PF00550 Phosphopantetheine attachment site DYB08_04545 PF00501 AMP-binding enzyme DYB08_04545 PF13193 AMP-binding enzyme C-terminal domain DYB08_04550 PF00668 Condensation domain DYB08_04550 PF00501 AMP-binding enzyme DYB08_04550 PF00550 Phosphopantetheine attachment site DYB08_04555 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DYB08_04560 PF00593 TonB dependent receptor DYB08_04560 PF07715 TonB-dependent Receptor Plug Domain DYB08_04565 PF01497 Periplasmic binding protein DYB08_04570 PF00005 ABC transporter DYB08_04575 PF01032 FecCD transport family DYB08_04580 PF01032 FecCD transport family DYB08_04585 PF13193 AMP-binding enzyme C-terminal domain DYB08_04585 PF00550 Phosphopantetheine attachment site DYB08_04585 PF00668 Condensation domain DYB08_04585 PF00501 AMP-binding enzyme DYB08_04585 PF00975 Thioesterase domain DYB08_04590 PF00668 Condensation domain DYB08_04590 PF00501 AMP-binding enzyme DYB08_04590 PF13193 AMP-binding enzyme C-terminal domain DYB08_04590 PF00550 Phosphopantetheine attachment site DYB08_04600 PF13309 HTH domain DYB08_04600 PF08348 YheO-like PAS domain DYB08_04610 PF02678 Pirin DYB08_04610 PF17954 Quercetinase C-terminal cupin domain DYB08_04630 PF00440 Bacterial regulatory proteins, tetR family DYB08_04635 PF00550 Phosphopantetheine attachment site DYB08_04635 PF08659 KR domain DYB08_04635 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_04635 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_04635 PF16197 Ketoacyl-synthetase C-terminal extension DYB08_04635 PF09277 Erythronolide synthase, docking DYB08_04635 PF14765 Polyketide synthase dehydratase DYB08_04635 PF08990 Erythronolide synthase docking DYB08_04635 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_04635 PF00698 Acyl transferase domain DYB08_04640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DYB08_04640 PF13378 Enolase C-terminal domain-like DYB08_04645 PF00083 Sugar (and other) transporter DYB08_04650 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DYB08_04660 PF00892 EamA-like transporter family DYB08_04680 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DYB08_04680 PF01266 FAD dependent oxidoreductase DYB08_04685 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_04685 PF18113 Rubredoxin binding C-terminal domain DYB08_04695 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DYB08_04695 PF00355 Rieske [2Fe-2S] domain DYB08_04700 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_04705 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_04715 PF03466 LysR substrate binding domain DYB08_04715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_04720 PF00324 Amino acid permease DYB08_04725 PF00171 Aldehyde dehydrogenase family DYB08_04740 PF13556 PucR C-terminal helix-turn-helix domain DYB08_04740 PF17853 GGDEF-like domain DYB08_04740 PF06018 CodY GAF-like domain DYB08_04780 PF04328 Selenoprotein, putative DYB08_04785 PF02554 Carbon starvation protein CstA DYB08_04785 PF13722 5TM C-terminal transporter carbon starvation CstA DYB08_04790 PF01132 Elongation factor P (EF-P) OB domain DYB08_04790 PF09285 Elongation factor P, C-terminal DYB08_04790 PF08207 Elongation factor P (EF-P) KOW-like domain DYB08_04795 PF04055 Radical SAM superfamily DYB08_04810 PF01197 Ribosomal protein L31 DYB08_04815 PF13593 SBF-like CPA transporter family (DUF4137) DYB08_04820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYB08_04825 PF07690 Major Facilitator Superfamily DYB08_04830 PF13654 AAA domain DYB08_04830 PF05362 Lon protease (S16) C-terminal proteolytic domain DYB08_04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_04835 PF03466 LysR substrate binding domain DYB08_04840 PF01551 Peptidase family M23 DYB08_04840 PF01476 LysM domain DYB08_04845 PF01975 Survival protein SurE DYB08_04860 PF00768 D-alanyl-D-alanine carboxypeptidase DYB08_04860 PF07943 Penicillin-binding protein 5, C-terminal domain DYB08_04865 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_04870 PF00293 NUDIX domain DYB08_04870 PF13344 Haloacid dehalogenase-like hydrolase DYB08_04880 PF04356 Protein of unknown function (DUF489) DYB08_04885 PF00206 Lyase DYB08_04885 PF08328 Adenylosuccinate lyase C-terminal DYB08_04900 PF01343 Peptidase family S49 DYB08_04900 PF08496 Peptidase family S49 N-terminal DYB08_04905 PF00005 ABC transporter DYB08_04910 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_04915 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_04920 PF12849 PBP superfamily domain DYB08_04925 PF00324 Amino acid permease DYB08_04930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYB08_04930 PF00205 Thiamine pyrophosphate enzyme, central domain DYB08_04930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYB08_04935 PF01037 Lrp/AsnC ligand binding domain DYB08_04940 PF00171 Aldehyde dehydrogenase family DYB08_04945 PF00282 Pyridoxal-dependent decarboxylase conserved domain DYB08_04950 PF00202 Aminotransferase class-III DYB08_04960 PF17754 MftR C-terminal domain DYB08_04960 PF00440 Bacterial regulatory proteins, tetR family DYB08_04970 PF00487 Fatty acid desaturase DYB08_04975 PF00970 Oxidoreductase FAD-binding domain DYB08_04975 PF00175 Oxidoreductase NAD-binding domain DYB08_04975 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_04980 PF00440 Bacterial regulatory proteins, tetR family DYB08_04990 PF00271 Helicase conserved C-terminal domain DYB08_04990 PF18339 RapA N-terminal Tudor like domain 1 DYB08_04990 PF18337 RapA N-terminal Tudor like domain DYB08_04990 PF12137 RNA polymerase recycling family C-terminal DYB08_04990 PF00176 SNF2 family N-terminal domain DYB08_04995 PF00849 RNA pseudouridylate synthase DYB08_05005 PF00202 Aminotransferase class-III DYB08_05010 PF02581 Thiamine monophosphate synthase DYB08_05035 PF00675 Insulinase (Peptidase family M16) DYB08_05035 PF05193 Peptidase M16 inactive domain DYB08_05040 PF02567 Phenazine biosynthesis-like protein DYB08_05050 PF03466 LysR substrate binding domain DYB08_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_05055 PF06779 Uncharacterised MFS-type transporter YbfB DYB08_05075 PF00180 Isocitrate/isopropylmalate dehydrogenase DYB08_05080 PF00849 RNA pseudouridylate synthase DYB08_05085 PF03971 Monomeric isocitrate dehydrogenase DYB08_05095 PF00768 D-alanyl-D-alanine carboxypeptidase DYB08_05095 PF07943 Penicillin-binding protein 5, C-terminal domain DYB08_05100 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_05105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_05110 PF03441 FAD binding domain of DNA photolyase DYB08_05110 PF00875 DNA photolyase DYB08_05140 PF02350 UDP-N-acetylglucosamine 2-epimerase DYB08_05155 PF03060 Nitronate monooxygenase DYB08_05160 PF01207 Dihydrouridine synthase (Dus) DYB08_05165 PF07759 Protein of unknown function (DUF1615) DYB08_05175 PF01472 PUA domain DYB08_05175 PF00696 Amino acid kinase family DYB08_05180 PF01926 50S ribosome-binding GTPase DYB08_05180 PF01018 GTP1/OBG DYB08_05195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DYB08_05195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DYB08_05200 PF00892 EamA-like transporter family DYB08_05210 PF12344 Ultra-violet resistance protein B DYB08_05210 PF17757 UvrB interaction domain DYB08_05210 PF00271 Helicase conserved C-terminal domain DYB08_05210 PF04851 Type III restriction enzyme, res subunit DYB08_05210 PF02151 UvrB/uvrC motif DYB08_05220 PF00990 Diguanylate cyclase, GGDEF domain DYB08_05220 PF17151 Periplasmic sensor domain DYB08_05260 PF00106 short chain dehydrogenase DYB08_05265 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DYB08_05270 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DYB08_05275 PF11967 Recombination protein O N terminal DYB08_05275 PF02565 Recombination protein O C terminal DYB08_05285 PF07650 KH domain DYB08_05285 PF01926 50S ribosome-binding GTPase DYB08_05290 PF00035 Double-stranded RNA binding motif DYB08_05290 PF14622 Ribonuclease-III-like DYB08_05300 PF10502 Signal peptidase, peptidase S26 DYB08_05305 PF06421 GTP-binding protein LepA C-terminus DYB08_05305 PF00679 Elongation factor G C-terminus DYB08_05305 PF00009 Elongation factor Tu GTP binding domain DYB08_05305 PF03144 Elongation factor Tu domain 2 DYB08_05315 PF13180 PDZ domain DYB08_05320 PF00890 FAD binding domain DYB08_05320 PF02910 Fumarate reductase flavoprotein C-term DYB08_05330 PF02223 Thymidylate kinase DYB08_05335 PF02618 YceG-like family DYB08_05340 PF01063 Amino-transferase class IV DYB08_05355 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_05360 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_05365 PF00005 ABC transporter DYB08_05365 PF12857 TOBE-like domain DYB08_05370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_05370 PF03466 LysR substrate binding domain DYB08_05380 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_05380 PF14602 Hexapeptide repeat of succinyl-transferase DYB08_05380 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DYB08_05390 PF06508 Queuosine biosynthesis protein QueC DYB08_05405 PF00578 AhpC/TSA family DYB08_05415 PF00293 NUDIX domain DYB08_05415 PF01467 Cytidylyltransferase-like DYB08_05420 PF00378 Enoyl-CoA hydratase/isomerase DYB08_05425 PF01784 NIF3 (NGG1p interacting factor 3) DYB08_05430 PF07690 Major Facilitator Superfamily DYB08_05435 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DYB08_05435 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DYB08_05435 PF02769 AIR synthase related protein, C-terminal domain DYB08_05445 PF01966 HD domain DYB08_05450 PF01330 RuvA N terminal domain DYB08_05450 PF07499 RuvA, C-terminal domain DYB08_05455 PF17864 RuvB AAA lid domain DYB08_05455 PF05491 RuvB C-terminal winged helix domain DYB08_05455 PF05496 Holliday junction DNA helicase RuvB P-loop domain DYB08_05460 PF01546 Peptidase family M20/M25/M40 DYB08_05460 PF07687 Peptidase dimerisation domain DYB08_05465 PF03061 Thioesterase superfamily DYB08_05470 PF01618 MotA/TolQ/ExbB proton channel family DYB08_05475 PF02472 Biopolymer transport protein ExbD/TolR DYB08_05485 PF07676 WD40-like Beta Propeller Repeat DYB08_05485 PF04052 TolB amino-terminal domain DYB08_05490 PF00691 OmpA family DYB08_05500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DYB08_05505 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYB08_05505 PF00588 SpoU rRNA Methylase family DYB08_05535 PF00308 Bacterial dnaA protein DYB08_05535 PF08299 Bacterial dnaA protein helix-turn-helix DYB08_05535 PF11638 DnaA N-terminal domain DYB08_05540 PF01594 AI-2E family transporter DYB08_05545 PF00586 AIR synthase related protein, N-terminal domain DYB08_05545 PF02769 AIR synthase related protein, C-terminal domain DYB08_05550 PF00551 Formyl transferase DYB08_05555 PF12697 Alpha/beta hydrolase family DYB08_05560 PF06965 Na+/H+ antiporter 1 DYB08_05560 PF01343 Peptidase family S49 DYB08_05585 PF00005 ABC transporter DYB08_05590 PF02687 FtsX-like permease family DYB08_05590 PF12704 MacB-like periplasmic core domain DYB08_05600 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DYB08_05610 PF00266 Aminotransferase class-V DYB08_05625 PF13533 Biotin-lipoyl like DYB08_05645 PF00535 Glycosyl transferase family 2 DYB08_05660 PF03989 DNA gyrase C-terminal domain, beta-propeller DYB08_05660 PF00521 DNA gyrase/topoisomerase IV, subunit A DYB08_05665 PF00766 Electron transfer flavoprotein FAD-binding domain DYB08_05665 PF01012 Electron transfer flavoprotein domain DYB08_05670 PF01012 Electron transfer flavoprotein domain DYB08_05675 PF00589 Phage integrase family DYB08_05675 PF02899 Phage integrase, N-terminal SAM-like domain DYB08_05680 PF01810 LysE type translocator DYB08_05685 PF01678 Diaminopimelate epimerase DYB08_05690 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DYB08_05690 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DYB08_05700 PF00324 Amino acid permease DYB08_05705 PF18073 Rubredoxin metal binding domain DYB08_05715 PF00152 tRNA synthetases class II (D, K and N) DYB08_05720 PF11890 Domain of unknown function (DUF3410) DYB08_05720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYB08_05720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYB08_05725 PF06803 Protein of unknown function (DUF1232) DYB08_05730 PF02634 FdhD/NarQ family DYB08_05735 PF00384 Molybdopterin oxidoreductase DYB08_05740 PF02595 Glycerate kinase family DYB08_05755 PF00881 Nitroreductase family DYB08_05780 PF00668 Condensation domain DYB08_05780 PF00975 Thioesterase domain DYB08_05780 PF00501 AMP-binding enzyme DYB08_05780 PF13193 AMP-binding enzyme C-terminal domain DYB08_05780 PF00550 Phosphopantetheine attachment site DYB08_05795 PF01272 Transcription elongation factor, GreA/GreB, C-term DYB08_05795 PF03449 Transcription elongation factor, N-terminal DYB08_05800 PF01464 Transglycosylase SLT domain DYB08_05800 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_05810 PF01171 PP-loop family DYB08_05825 PF01464 Transglycosylase SLT domain DYB08_05830 PF01435 Peptidase family M48 DYB08_05840 PF00873 AcrB/AcrD/AcrF family DYB08_05845 PF03009 Glycerophosphoryl diester phosphodiesterase family DYB08_05850 PF00753 Metallo-beta-lactamase superfamily DYB08_05855 PF01219 Prokaryotic diacylglycerol kinase DYB08_05860 PF00118 TCP-1/cpn60 chaperonin family DYB08_05865 PF00166 Chaperonin 10 Kd subunit DYB08_05875 PF00149 Calcineurin-like phosphoesterase DYB08_05880 PF00781 Diacylglycerol kinase catalytic domain DYB08_05885 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DYB08_05885 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DYB08_05890 PF01266 FAD dependent oxidoreductase DYB08_05890 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DYB08_05895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYB08_05895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYB08_05900 PF00083 Sugar (and other) transporter DYB08_05915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DYB08_05915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DYB08_05930 PF09423 PhoD-like phosphatase DYB08_05930 PF16655 PhoD-like phosphatase, N-terminal domain DYB08_05955 PF06480 FtsH Extracellular DYB08_05955 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_05955 PF17862 AAA+ lid domain DYB08_05955 PF01434 Peptidase family M41 DYB08_05960 PF01728 FtsJ-like methyltransferase DYB08_05965 PF01985 CRS1 / YhbY (CRM) domain DYB08_05980 PF00117 Glutamine amidotransferase class-I DYB08_05980 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DYB08_05985 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DYB08_05985 PF02142 MGS-like domain DYB08_05985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_05990 PF03449 Transcription elongation factor, N-terminal DYB08_05990 PF01272 Transcription elongation factor, GreA/GreB, C-term DYB08_05995 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_06000 PF00582 Universal stress protein family DYB08_06005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYB08_06015 PF09587 Bacterial capsule synthesis protein PGA_cap DYB08_06050 PF00999 Sodium/hydrogen exchanger family DYB08_06055 PF04228 Putative neutral zinc metallopeptidase DYB08_06060 PF05661 Protein of unknown function (DUF808) DYB08_06065 PF00579 tRNA synthetases class I (W and Y) DYB08_06070 PF00549 CoA-ligase DYB08_06070 PF02629 CoA binding domain DYB08_06075 PF00549 CoA-ligase DYB08_06075 PF08442 ATP-grasp domain DYB08_06080 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_06080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYB08_06085 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYB08_06085 PF02817 e3 binding domain DYB08_06085 PF00364 Biotin-requiring enzyme DYB08_06090 PF16870 2-oxoglutarate dehydrogenase C-terminal DYB08_06090 PF02779 Transketolase, pyrimidine binding domain DYB08_06090 PF00676 Dehydrogenase E1 component DYB08_06090 PF16078 2-oxoglutarate dehydrogenase N-terminus DYB08_06105 PF13085 2Fe-2S iron-sulfur cluster binding domain DYB08_06110 PF00890 FAD binding domain DYB08_06110 PF02910 Fumarate reductase flavoprotein C-term DYB08_06115 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DYB08_06120 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DYB08_06125 PF00285 Citrate synthase, C-terminal domain DYB08_06155 PF04542 Sigma-70 region 2 DYB08_06155 PF03979 Sigma-70 factor, region 1.1 DYB08_06155 PF04546 Sigma-70, non-essential region DYB08_06155 PF04539 Sigma-70 region 3 DYB08_06155 PF04545 Sigma-70, region 4 DYB08_06155 PF00140 Sigma-70 factor, region 1.2 DYB08_06160 PF04359 Protein of unknown function (DUF493) DYB08_06165 PF03099 Biotin/lipoate A/B protein ligase family DYB08_06175 PF00465 Iron-containing alcohol dehydrogenase DYB08_06180 PF13520 Amino acid permease DYB08_06185 PF03358 NADPH-dependent FMN reductase DYB08_06190 PF01638 HxlR-like helix-turn-helix DYB08_06195 PF00588 SpoU rRNA Methylase family DYB08_06200 PF14824 Sirohaem biosynthesis protein central DYB08_06200 PF10414 Sirohaem synthase dimerisation region DYB08_06200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYB08_06205 PF02403 Seryl-tRNA synthetase N-terminal domain DYB08_06205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYB08_06215 PF03548 Outer membrane lipoprotein carrier protein LolA DYB08_06220 PF01016 Ribosomal L27 protein DYB08_06225 PF00829 Ribosomal prokaryotic L21 protein DYB08_06235 PF00348 Polyprenyl synthetase DYB08_06245 PF01569 PAP2 superfamily DYB08_06250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_06250 PF00529 HlyD membrane-fusion protein of T1SS DYB08_06255 PF00873 AcrB/AcrD/AcrF family DYB08_06260 PF02321 Outer membrane efflux protein DYB08_06265 PF01906 Putative heavy-metal-binding DYB08_06270 PF01906 Putative heavy-metal-binding DYB08_06290 PF08264 Anticodon-binding domain of tRNA DYB08_06290 PF10458 Valyl tRNA synthetase tRNA binding arm DYB08_06290 PF00133 tRNA synthetases class I (I, L, M and V) DYB08_06310 PF03466 LysR substrate binding domain DYB08_06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_06320 PF00909 Ammonium Transporter Family DYB08_06330 PF00512 His Kinase A (phospho-acceptor) domain DYB08_06330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_06330 PF08521 Two-component sensor kinase N-terminal DYB08_06335 PF00072 Response regulator receiver domain DYB08_06335 PF00486 Transcriptional regulatory protein, C terminal DYB08_06340 PF08019 Phosphoethanolamine transferase EptA/EptB DYB08_06340 PF00884 Sulfatase DYB08_06360 PF01734 Patatin-like phospholipase DYB08_06370 PF01145 SPFH domain / Band 7 family DYB08_06375 PF04237 YjbR DYB08_06380 PF00348 Polyprenyl synthetase DYB08_06385 PF04303 PrpF protein DYB08_06390 PF00324 Amino acid permease DYB08_06400 PF01965 DJ-1/PfpI family DYB08_06405 PF08990 Erythronolide synthase docking DYB08_06405 PF16197 Ketoacyl-synthetase C-terminal extension DYB08_06405 PF14765 Polyketide synthase dehydratase DYB08_06405 PF00550 Phosphopantetheine attachment site DYB08_06405 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_06405 PF00698 Acyl transferase domain DYB08_06405 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_06405 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_06405 PF09277 Erythronolide synthase, docking DYB08_06405 PF08659 KR domain DYB08_06410 PF06719 AraC-type transcriptional regulator N-terminus DYB08_06410 PF12833 Helix-turn-helix domain DYB08_06415 PF02673 Bacitracin resistance protein BacA DYB08_06435 PF02525 Flavodoxin-like fold DYB08_06450 PF01507 Phosphoadenosine phosphosulfate reductase family DYB08_06455 PF06974 Protein of unknown function (DUF1298) DYB08_06455 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DYB08_06465 PF00575 S1 RNA binding domain DYB08_06465 PF10150 Ribonuclease E/G family DYB08_06470 PF02545 Maf-like protein DYB08_06475 PF04093 rod shape-determining protein MreD DYB08_06480 PF04085 rod shape-determining protein MreC DYB08_06490 PF02686 Glu-tRNAGln amidotransferase C subunit DYB08_06495 PF01425 Amidase DYB08_06500 PF02637 GatB domain DYB08_06500 PF02934 GatB/GatE catalytic domain DYB08_06530 PF05992 SbmA/BacA-like family DYB08_06535 PF13291 ACT domain DYB08_06535 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_06540 PF01734 Patatin-like phospholipase DYB08_06545 PF01235 Sodium:alanine symporter family DYB08_06560 PF00881 Nitroreductase family DYB08_06565 PF07690 Major Facilitator Superfamily DYB08_06570 PF12805 FUSC-like inner membrane protein yccS DYB08_06580 PF00258 Flavodoxin DYB08_06580 PF00667 FAD binding domain DYB08_06580 PF00175 Oxidoreductase NAD-binding domain DYB08_06620 PF03734 L,D-transpeptidase catalytic domain DYB08_06620 PF17969 L,D-transpeptidase C-terminal domain DYB08_06625 PF04304 Protein of unknown function (DUF454) DYB08_06635 PF08085 Entericidin EcnA/B family DYB08_06640 PF01546 Peptidase family M20/M25/M40 DYB08_06640 PF07687 Peptidase dimerisation domain DYB08_06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_06650 PF01627 Hpt domain DYB08_06650 PF00072 Response regulator receiver domain DYB08_06650 PF01584 CheW-like domain DYB08_06655 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DYB08_06655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYB08_06660 PF01584 CheW-like domain DYB08_06665 PF00072 Response regulator receiver domain DYB08_06670 PF00072 Response regulator receiver domain DYB08_06695 PF00873 AcrB/AcrD/AcrF family DYB08_06700 PF03129 Anticodon binding domain DYB08_06700 PF04073 Aminoacyl-tRNA editing domain DYB08_06700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYB08_06705 PF07411 Domain of unknown function (DUF1508) DYB08_06710 PF03831 PhnA domain DYB08_06710 PF08274 PhnA Zinc-Ribbon DYB08_06715 PF04343 Protein of unknown function, DUF488 DYB08_06725 PF01571 Aminomethyltransferase folate-binding domain DYB08_06730 PF10411 Disulfide bond isomerase protein N-terminus DYB08_06730 PF13098 Thioredoxin-like domain DYB08_06740 PF03547 Membrane transport protein DYB08_06745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_06750 PF07715 TonB-dependent Receptor Plug Domain DYB08_06750 PF00593 TonB dependent receptor DYB08_06755 PF02245 Methylpurine-DNA glycosylase (MPG) DYB08_06760 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DYB08_06760 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DYB08_06760 PF06827 Zinc finger found in FPG and IleRS DYB08_06775 PF01741 Large-conductance mechanosensitive channel, MscL DYB08_06785 PF00860 Permease family DYB08_06790 PF08468 Methyltransferase small domain N-terminal DYB08_06790 PF05175 Methyltransferase small domain DYB08_06795 PF00324 Amino acid permease DYB08_06800 PF01139 tRNA-splicing ligase RtcB DYB08_06810 PF13505 Outer membrane protein beta-barrel domain DYB08_06810 PF00691 OmpA family DYB08_06820 PF00108 Thiolase, N-terminal domain DYB08_06820 PF02803 Thiolase, C-terminal domain DYB08_06830 PF00893 Small Multidrug Resistance protein DYB08_06840 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYB08_06840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DYB08_06845 PF01011 PQQ enzyme repeat DYB08_06850 PF04966 Carbohydrate-selective porin, OprB family DYB08_06855 PF02515 CoA-transferase family III DYB08_06860 PF02311 AraC-like ligand binding domain DYB08_06860 PF12833 Helix-turn-helix domain DYB08_06865 PF02803 Thiolase, C-terminal domain DYB08_06865 PF00108 Thiolase, N-terminal domain DYB08_06870 PF00378 Enoyl-CoA hydratase/isomerase DYB08_06870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_06870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_06895 PF03006 Haemolysin-III related DYB08_06900 PF07690 Major Facilitator Superfamily DYB08_06900 PF00083 Sugar (and other) transporter DYB08_06910 PF07516 SecA Wing and Scaffold domain DYB08_06910 PF01043 SecA preprotein cross-linking domain DYB08_06910 PF07517 SecA DEAD-like domain DYB08_06910 PF02810 SEC-C motif DYB08_06925 PF10417 C-terminal domain of 1-Cys peroxiredoxin DYB08_06925 PF00578 AhpC/TSA family DYB08_06930 PF00753 Metallo-beta-lactamase superfamily DYB08_06945 PF02875 Mur ligase family, glutamate ligase domain DYB08_06945 PF08245 Mur ligase middle domain DYB08_06950 PF01039 Carboxyl transferase domain DYB08_06955 PF00290 Tryptophan synthase alpha chain DYB08_06980 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_06985 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DYB08_06990 PF07715 TonB-dependent Receptor Plug Domain DYB08_06990 PF00593 TonB dependent receptor DYB08_06995 PF01923 Cobalamin adenosyltransferase DYB08_07015 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DYB08_07020 PF00072 Response regulator receiver domain DYB08_07020 PF00486 Transcriptional regulatory protein, C terminal DYB08_07025 PF00672 HAMP domain DYB08_07025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_07025 PF00512 His Kinase A (phospho-acceptor) domain DYB08_07035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_07035 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_07035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_07035 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYB08_07040 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_07040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_07040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_07040 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYB08_07050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_07050 PF03466 LysR substrate binding domain DYB08_07055 PF02798 Glutathione S-transferase, N-terminal domain DYB08_07055 PF00043 Glutathione S-transferase, C-terminal domain DYB08_07060 PF06146 Phosphate-starvation-inducible E DYB08_07080 PF00593 TonB dependent receptor DYB08_07080 PF07715 TonB-dependent Receptor Plug Domain DYB08_07090 PF02938 GAD domain DYB08_07090 PF01336 OB-fold nucleic acid binding domain DYB08_07090 PF00152 tRNA synthetases class II (D, K and N) DYB08_07095 PF17102 Stealth protein CR3, conserved region 3 DYB08_07095 PF11380 Stealth protein CR2, conserved region 2 DYB08_07095 PF17101 Stealth protein CR1, conserved region 1 DYB08_07120 PF00534 Glycosyl transferases group 1 DYB08_07120 PF13439 Glycosyltransferase Family 4 DYB08_07125 PF00535 Glycosyl transferase family 2 DYB08_07130 PF01522 Polysaccharide deacetylase DYB08_07145 PF01063 Amino-transferase class IV DYB08_07150 PF03710 Glutamate-ammonia ligase adenylyltransferase DYB08_07150 PF08335 GlnD PII-uridylyltransferase DYB08_07155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_07155 PF00512 His Kinase A (phospho-acceptor) domain DYB08_07155 PF07689 KaiB domain DYB08_07195 PF02547 Queuosine biosynthesis protein DYB08_07210 PF01702 Queuine tRNA-ribosyltransferase DYB08_07215 PF02699 Preprotein translocase subunit DYB08_07220 PF07549 SecD/SecF GG Motif DYB08_07220 PF02355 Protein export membrane protein DYB08_07220 PF13721 SecD export protein N-terminal TM region DYB08_07225 PF02355 Protein export membrane protein DYB08_07225 PF07549 SecD/SecF GG Motif DYB08_07230 PF04127 DNA / pantothenate metabolism flavoprotein DYB08_07230 PF02441 Flavoprotein DYB08_07235 PF04002 RadC-like JAB domain DYB08_07240 PF01062 Bestrophin, RFP-TM, chloride channel DYB08_07245 PF02811 PHP domain DYB08_07250 PF04279 Intracellular septation protein A DYB08_07255 PF03795 YCII-related domain DYB08_07265 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DYB08_07265 PF01266 FAD dependent oxidoreductase DYB08_07275 PF04461 Protein of unknown function (DUF520) DYB08_07285 PF03061 Thioesterase superfamily DYB08_07290 PF00085 Thioredoxin DYB08_07295 PF00561 alpha/beta hydrolase fold DYB08_07300 PF04273 Putative phosphatase (DUF442) DYB08_07300 PF00753 Metallo-beta-lactamase superfamily DYB08_07310 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_07310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYB08_07345 PF17152 Periplasmic sensor domain DYB08_07345 PF00990 Diguanylate cyclase, GGDEF domain DYB08_07350 PF00691 OmpA family DYB08_07350 PF01389 OmpA-like transmembrane domain DYB08_07355 PF00149 Calcineurin-like phosphoesterase DYB08_07355 PF10518 TAT (twin-arginine translocation) pathway signal sequence DYB08_07360 PF13091 PLD-like domain DYB08_07370 PF16360 GTP-binding GTPase Middle Region DYB08_07370 PF13167 GTP-binding GTPase N-terminal DYB08_07370 PF01926 50S ribosome-binding GTPase DYB08_07390 PF00149 Calcineurin-like phosphoesterase DYB08_07395 PF00398 Ribosomal RNA adenine dimethylase DYB08_07400 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DYB08_07405 PF00572 Ribosomal protein L13 DYB08_07410 PF00380 Ribosomal protein S9/S16 DYB08_07415 PF00043 Glutathione S-transferase, C-terminal domain DYB08_07415 PF13417 Glutathione S-transferase, N-terminal domain DYB08_07420 PF04386 Stringent starvation protein B DYB08_07430 PF00289 Biotin carboxylase, N-terminal domain DYB08_07430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_07430 PF02785 Biotin carboxylase C-terminal domain DYB08_07430 PF00364 Biotin-requiring enzyme DYB08_07455 PF01039 Carboxyl transferase domain DYB08_07470 PF00440 Bacterial regulatory proteins, tetR family DYB08_07470 PF17932 Tetracyclin repressor-like, C-terminal domain DYB08_07475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_07475 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_07475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_07520 PF01066 CDP-alcohol phosphatidyltransferase DYB08_07525 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DYB08_07545 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DYB08_07545 PF00056 lactate/malate dehydrogenase, NAD binding domain DYB08_07555 PF01551 Peptidase family M23 DYB08_07555 PF01464 Transglycosylase SLT domain DYB08_07555 PF10145 Phage-related minor tail protein DYB08_07560 PF04055 Radical SAM superfamily DYB08_07560 PF01938 TRAM domain DYB08_07560 PF00919 Uncharacterized protein family UPF0004 DYB08_07565 PF02562 PhoH-like protein DYB08_07570 PF02130 Uncharacterized protein family UPF0054 DYB08_07595 PF03358 NADPH-dependent FMN reductase DYB08_07600 PF03631 Virulence factor BrkB DYB08_07605 PF00892 EamA-like transporter family DYB08_07610 PF12833 Helix-turn-helix domain DYB08_07615 PF01557 Fumarylacetoacetate (FAA) hydrolase family DYB08_07660 PF08461 Ribonuclease R winged-helix domain DYB08_07660 PF08206 Ribonuclease B OB domain DYB08_07660 PF00773 RNB domain DYB08_07660 PF00575 S1 RNA binding domain DYB08_07660 PF17876 Cold shock domain DYB08_07665 PF01432 Peptidase family M3 DYB08_07670 PF09526 Probable metal-binding protein (DUF2387) DYB08_07700 PF03937 Flavinator of succinate dehydrogenase DYB08_07705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_07705 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_07705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_07710 PF00743 Flavin-binding monooxygenase-like DYB08_07715 PF01196 Ribosomal protein L17 DYB08_07720 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DYB08_07720 PF01000 RNA polymerase Rpb3/RpoA insert domain DYB08_07720 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DYB08_07725 PF01479 S4 domain DYB08_07725 PF00163 Ribosomal protein S4/S9 N-terminal domain DYB08_07730 PF00411 Ribosomal protein S11 DYB08_07735 PF00416 Ribosomal protein S13/S18 DYB08_07740 PF00444 Ribosomal protein L36 DYB08_07745 PF00344 SecY translocase DYB08_07750 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DYB08_07755 PF00327 Ribosomal protein L30p/L7e DYB08_07760 PF00333 Ribosomal protein S5, N-terminal domain DYB08_07760 PF03719 Ribosomal protein S5, C-terminal domain DYB08_07765 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DYB08_07770 PF00347 Ribosomal protein L6 DYB08_07775 PF00410 Ribosomal protein S8 DYB08_07780 PF00253 Ribosomal protein S14p/S29e DYB08_07785 PF00281 Ribosomal protein L5 DYB08_07785 PF00673 ribosomal L5P family C-terminus DYB08_07790 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DYB08_07790 PF00467 KOW motif DYB08_07795 PF00238 Ribosomal protein L14p/L23e DYB08_07800 PF00366 Ribosomal protein S17 DYB08_07805 PF00831 Ribosomal L29 protein DYB08_07810 PF00252 Ribosomal protein L16p/L10e DYB08_07815 PF07650 KH domain DYB08_07815 PF00189 Ribosomal protein S3, C-terminal domain DYB08_07820 PF00237 Ribosomal protein L22p/L17e DYB08_07825 PF00203 Ribosomal protein S19 DYB08_07830 PF03947 Ribosomal Proteins L2, C-terminal domain DYB08_07830 PF00181 Ribosomal Proteins L2, RNA binding domain DYB08_07835 PF00276 Ribosomal protein L23 DYB08_07840 PF00573 Ribosomal protein L4/L1 family DYB08_07845 PF00297 Ribosomal protein L3 DYB08_07850 PF00338 Ribosomal protein S10p/S20e DYB08_07855 PF00117 Glutamine amidotransferase class-I DYB08_07860 PF01053 Cys/Met metabolism PLP-dependent enzyme DYB08_07865 PF05872 Bacterial protein of unknown function (DUF853) DYB08_07870 PF00175 Oxidoreductase NAD-binding domain DYB08_07870 PF00042 Globin DYB08_07870 PF00970 Oxidoreductase FAD-binding domain DYB08_07875 PF02082 Transcriptional regulator DYB08_07880 PF01926 50S ribosome-binding GTPase DYB08_07890 PF00375 Sodium:dicarboxylate symporter family DYB08_07900 PF01553 Acyltransferase DYB08_07915 PF17191 RecG wedge domain DYB08_07915 PF00270 DEAD/DEAH box helicase DYB08_07915 PF00271 Helicase conserved C-terminal domain DYB08_07920 PF00156 Phosphoribosyl transferase domain DYB08_07925 PF00293 NUDIX domain DYB08_07930 PF03641 Possible lysine decarboxylase DYB08_07935 PF01544 CorA-like Mg2+ transporter protein DYB08_07945 PF05494 MlaC protein DYB08_07955 PF02405 Permease MlaE DYB08_07960 PF00005 ABC transporter DYB08_07965 PF00271 Helicase conserved C-terminal domain DYB08_07965 PF12343 Cold shock protein DEAD box A DYB08_07965 PF03880 DbpA RNA binding domain DYB08_07965 PF00270 DEAD/DEAH box helicase DYB08_07970 PF00459 Inositol monophosphatase family DYB08_07975 PF02779 Transketolase, pyrimidine binding domain DYB08_07975 PF02780 Transketolase, C-terminal domain DYB08_07975 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DYB08_07980 PF00925 GTP cyclohydrolase II DYB08_07985 PF01218 Coproporphyrinogen III oxidase DYB08_07990 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DYB08_07990 PF01488 Shikimate / quinate 5-dehydrogenase DYB08_07990 PF08501 Shikimate dehydrogenase substrate binding domain DYB08_08000 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYB08_08000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_08000 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_08000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_08010 PF04024 PspC domain DYB08_08015 PF00571 CBS domain DYB08_08040 PF02091 Glycyl-tRNA synthetase alpha subunit DYB08_08045 PF02092 Glycyl-tRNA synthetase beta subunit DYB08_08045 PF05746 DALR anticodon binding domain DYB08_08055 PF00892 EamA-like transporter family DYB08_08060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_08060 PF03466 LysR substrate binding domain DYB08_08090 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DYB08_08095 PF04996 Succinylarginine dihydrolase DYB08_08100 PF00171 Aldehyde dehydrogenase family DYB08_08105 PF04958 Arginine N-succinyltransferase beta subunit DYB08_08110 PF00202 Aminotransferase class-III DYB08_08115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DYB08_08115 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DYB08_08120 PF00324 Amino acid permease DYB08_08150 PF13614 AAA domain DYB08_08155 PF01594 AI-2E family transporter DYB08_08160 PF00080 Copper/zinc superoxide dismutase (SODC) DYB08_08165 PF12805 FUSC-like inner membrane protein yccS DYB08_08170 PF07690 Major Facilitator Superfamily DYB08_08200 PF03992 Antibiotic biosynthesis monooxygenase DYB08_08210 PF02913 FAD linked oxidases, C-terminal domain DYB08_08210 PF01565 FAD binding domain DYB08_08215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYB08_08215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYB08_08220 PF00892 EamA-like transporter family DYB08_08225 PF00892 EamA-like transporter family DYB08_08235 PF01925 Sulfite exporter TauE/SafE DYB08_08240 PF01509 TruB family pseudouridylate synthase (N terminal domain) DYB08_08240 PF16198 tRNA pseudouridylate synthase B C-terminal domain DYB08_08240 PF09157 Pseudouridine synthase II TruB, C-terminal DYB08_08245 PF03280 Proteobacterial lipase chaperone protein DYB08_08250 PF00561 alpha/beta hydrolase fold DYB08_08255 PF01245 Ribosomal protein L19 DYB08_08260 PF01746 tRNA (Guanine-1)-methyltransferase DYB08_08270 PF01782 RimM N-terminal domain DYB08_08270 PF05239 PRC-barrel domain DYB08_08275 PF00886 Ribosomal protein S16 DYB08_08315 PF02401 LytB protein DYB08_08320 PF00625 Guanylate kinase DYB08_08325 PF01192 RNA polymerase Rpb6 DYB08_08335 PF04607 Region found in RelA / SpoT proteins DYB08_08335 PF02824 TGS domain DYB08_08335 PF13291 ACT domain DYB08_08340 PF01042 Endoribonuclease L-PSP DYB08_08345 PF04324 BFD-like [2Fe-2S] binding domain DYB08_08350 PF00210 Ferritin-like domain DYB08_08355 PF15864 Protein glycosylation ligase DYB08_08355 PF04932 O-Antigen ligase DYB08_08355 PF11846 Virulence factor membrane-bound polymerase, C-terminal DYB08_08365 PF07963 Prokaryotic N-terminal methylation motif DYB08_08365 PF00114 Pilin (bacterial filament) DYB08_08375 PF04536 TPM domain DYB08_08380 PF04011 LemA family DYB08_08390 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_08390 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DYB08_08395 PF01493 GXGXG motif DYB08_08395 PF01645 Conserved region in glutamate synthase DYB08_08395 PF04898 Glutamate synthase central domain DYB08_08395 PF00310 Glutamine amidotransferases class-II DYB08_08405 PF01761 3-dehydroquinate synthase DYB08_08410 PF01202 Shikimate kinase DYB08_08415 PF07660 Secretin and TonB N terminus short domain DYB08_08415 PF03958 Bacterial type II/III secretion system short domain DYB08_08415 PF00263 Bacterial type II and III secretion system protein DYB08_08415 PF11741 AMIN domain DYB08_08440 PF00905 Penicillin binding protein transpeptidase domain DYB08_08440 PF00912 Transglycosylase DYB08_08440 PF17092 Penicillin-binding protein OB-like domain DYB08_08445 PF13847 Methyltransferase domain DYB08_08455 PF00953 Glycosyl transferase family 4 DYB08_08460 PF01225 Mur ligase family, catalytic domain DYB08_08460 PF08245 Mur ligase middle domain DYB08_08460 PF02875 Mur ligase family, glutamate ligase domain DYB08_08465 PF08245 Mur ligase middle domain DYB08_08465 PF02875 Mur ligase family, glutamate ligase domain DYB08_08465 PF01225 Mur ligase family, catalytic domain DYB08_08470 PF03717 Penicillin-binding Protein dimerisation domain DYB08_08470 PF00905 Penicillin binding protein transpeptidase domain DYB08_08480 PF01795 MraW methylase family DYB08_08495 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYB08_08510 PF00324 Amino acid permease DYB08_08540 PF01545 Cation efflux family DYB08_08545 PF00873 AcrB/AcrD/AcrF family DYB08_08550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_08550 PF00529 HlyD membrane-fusion protein of T1SS DYB08_08570 PF04191 Phospholipid methyltransferase DYB08_08595 PF12848 ABC transporter DYB08_08595 PF00005 ABC transporter DYB08_08600 PF01053 Cys/Met metabolism PLP-dependent enzyme DYB08_08605 PF00106 short chain dehydrogenase DYB08_08610 PF00916 Sulfate permease family DYB08_08610 PF01740 STAS domain DYB08_08615 PF17674 HHH domain DYB08_08615 PF00575 S1 RNA binding domain DYB08_08615 PF09371 Tex-like protein N-terminal domain DYB08_08615 PF16921 Tex protein YqgF-like domain DYB08_08620 PF00486 Transcriptional regulatory protein, C terminal DYB08_08620 PF00072 Response regulator receiver domain DYB08_08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_08625 PF00512 His Kinase A (phospho-acceptor) domain DYB08_08625 PF00672 HAMP domain DYB08_08635 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DYB08_08635 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DYB08_08640 PF00583 Acetyltransferase (GNAT) family DYB08_08660 PF00475 Imidazoleglycerol-phosphate dehydratase DYB08_08665 PF00117 Glutamine amidotransferase class-I DYB08_08680 PF00977 Histidine biosynthesis protein DYB08_08695 PF03992 Antibiotic biosynthesis monooxygenase DYB08_08710 PF01636 Phosphotransferase enzyme family DYB08_08715 PF00977 Histidine biosynthesis protein DYB08_08730 PF00230 Major intrinsic protein DYB08_08755 PF02705 K+ potassium transporter DYB08_08775 PF02525 Flavodoxin-like fold DYB08_08785 PF01638 HxlR-like helix-turn-helix DYB08_08815 PF02311 AraC-like ligand binding domain DYB08_08815 PF12833 Helix-turn-helix domain DYB08_08820 PF00248 Aldo/keto reductase family DYB08_08840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_08840 PF03466 LysR substrate binding domain DYB08_08845 PF07690 Major Facilitator Superfamily DYB08_08865 PF01593 Flavin containing amine oxidoreductase DYB08_08870 PF05726 Pirin C-terminal cupin domain DYB08_08870 PF02678 Pirin DYB08_08875 PF00857 Isochorismatase family DYB08_08880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_08885 PF00171 Aldehyde dehydrogenase family DYB08_08890 PF00202 Aminotransferase class-III DYB08_08895 PF00392 Bacterial regulatory proteins, gntR family DYB08_08895 PF00155 Aminotransferase class I and II DYB08_08900 PF00324 Amino acid permease DYB08_08930 PF00436 Single-strand binding protein family DYB08_08935 PF07690 Major Facilitator Superfamily DYB08_08945 PF02581 Thiamine monophosphate synthase DYB08_08945 PF03070 TENA/THI-4/PQQC family DYB08_08945 PF08543 Phosphomethylpyrimidine kinase DYB08_08950 PF06942 GlpM protein DYB08_08960 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_08960 PF00107 Zinc-binding dehydrogenase DYB08_08965 PF00440 Bacterial regulatory proteins, tetR family DYB08_08965 PF16925 Tetracyclin repressor-like, C-terminal domain DYB08_08970 PF17760 UvrA interaction domain DYB08_08970 PF17755 UvrA DNA-binding domain DYB08_08970 PF00005 ABC transporter DYB08_08980 PF00990 Diguanylate cyclase, GGDEF domain DYB08_08980 PF17158 Membrane-associated sensor, integral membrane domain DYB08_08990 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_09000 PF00474 Sodium:solute symporter family DYB08_09005 PF04341 Protein of unknown function, DUF485 DYB08_09010 PF00672 HAMP domain DYB08_09010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_09010 PF00512 His Kinase A (phospho-acceptor) domain DYB08_09010 PF01627 Hpt domain DYB08_09010 PF00072 Response regulator receiver domain DYB08_09020 PF00196 Bacterial regulatory proteins, luxR family DYB08_09020 PF00072 Response regulator receiver domain DYB08_09025 PF03358 NADPH-dependent FMN reductase DYB08_09030 PF00296 Luciferase-like monooxygenase DYB08_09035 PF00872 Transposase, Mutator family DYB08_09040 PF01037 Lrp/AsnC ligand binding domain DYB08_09045 PF00857 Isochorismatase family DYB08_09050 PF16177 Acetyl-coenzyme A synthetase N-terminus DYB08_09050 PF00501 AMP-binding enzyme DYB08_09050 PF13193 AMP-binding enzyme C-terminal domain DYB08_09060 PF00924 Mechanosensitive ion channel DYB08_09065 PF04452 RNA methyltransferase DYB08_09070 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DYB08_09075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_09095 PF02272 DHHA1 domain DYB08_09095 PF17768 RecJ OB domain DYB08_09095 PF01368 DHH family DYB08_09100 PF01243 Pyridoxamine 5'-phosphate oxidase DYB08_09100 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DYB08_09105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_09105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_09105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_09105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_09110 PF00478 IMP dehydrogenase / GMP reductase domain DYB08_09110 PF00571 CBS domain DYB08_09115 PF03692 Putative zinc- or iron-chelating domain DYB08_09120 PF01613 Flavin reductase like domain DYB08_09120 PF00258 Flavodoxin DYB08_09125 PF00593 TonB dependent receptor DYB08_09125 PF07715 TonB-dependent Receptor Plug Domain DYB08_09130 PF01169 Uncharacterized protein family UPF0016 DYB08_09140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYB08_09140 PF02817 e3 binding domain DYB08_09140 PF00364 Biotin-requiring enzyme DYB08_09145 PF00456 Transketolase, thiamine diphosphate binding domain DYB08_09145 PF17831 Pyruvate dehydrogenase E1 component middle domain DYB08_09150 PF01551 Peptidase family M23 DYB08_09160 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DYB08_09165 PF12327 FtsZ family, C-terminal domain DYB08_09165 PF00091 Tubulin/FtsZ family, GTPase domain DYB08_09170 PF02491 SHS2 domain inserted in FTSA DYB08_09175 PF08478 POTRA domain, FtsQ-type DYB08_09175 PF03799 Cell division protein FtsQ DYB08_09180 PF07478 D-ala D-ala ligase C-terminus DYB08_09180 PF01820 D-ala D-ala ligase N-terminus DYB08_09185 PF08245 Mur ligase middle domain DYB08_09185 PF01225 Mur ligase family, catalytic domain DYB08_09185 PF02875 Mur ligase family, glutamate ligase domain DYB08_09190 PF04101 Glycosyltransferase family 28 C-terminal domain DYB08_09190 PF03033 Glycosyltransferase family 28 N-terminal domain DYB08_09195 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DYB08_09195 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DYB08_09205 PF07715 TonB-dependent Receptor Plug Domain DYB08_09205 PF00593 TonB dependent receptor DYB08_09210 PF00156 Phosphoribosyl transferase domain DYB08_09215 PF03372 Endonuclease/Exonuclease/phosphatase family DYB08_09220 PF03960 ArsC family DYB08_09230 PF07859 alpha/beta hydrolase fold DYB08_09235 PF00990 Diguanylate cyclase, GGDEF domain DYB08_09235 PF07694 5TMR of 5TMR-LYT DYB08_09240 PF11412 Disulphide bond corrector protein DsbC DYB08_09240 PF02683 Cytochrome C biogenesis protein transmembrane region DYB08_09270 PF00576 HIUase/Transthyretin family DYB08_09275 PF00860 Permease family DYB08_09285 PF01494 FAD binding domain DYB08_09290 PF03561 Allantoicase repeat DYB08_09295 PF04115 Ureidoglycolate lyase DYB08_09300 PF00106 short chain dehydrogenase DYB08_09305 PF01751 Toprim domain DYB08_09305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_09305 PF00986 DNA gyrase B subunit, carboxyl terminus DYB08_09305 PF00204 DNA gyrase B DYB08_09310 PF05728 Uncharacterised protein family (UPF0227) DYB08_09325 PF01476 LysM domain DYB08_09325 PF00877 NlpC/P60 family DYB08_09330 PF04717 Type VI secretion system, phage-baseplate injector DYB08_09335 PF02600 Disulfide bond formation protein DsbB DYB08_09340 PF04262 Glutamate-cysteine ligase DYB08_09355 PF04286 Protein of unknown function (DUF445) DYB08_09360 PF00155 Aminotransferase class I and II DYB08_09365 PF01554 MatE DYB08_09370 PF00106 short chain dehydrogenase DYB08_09380 PF00486 Transcriptional regulatory protein, C terminal DYB08_09380 PF00072 Response regulator receiver domain DYB08_09385 PF00989 PAS fold DYB08_09385 PF00512 His Kinase A (phospho-acceptor) domain DYB08_09385 PF11808 Phosphate regulon sensor protein PhoR DYB08_09385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_09415 PF03069 Acetamidase/Formamidase family DYB08_09420 PF02666 Phosphatidylserine decarboxylase DYB08_09425 PF00581 Rhodanese-like domain DYB08_09430 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DYB08_09430 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DYB08_09435 PF02580 D-Tyr-tRNA(Tyr) deacylase DYB08_09465 PF00925 GTP cyclohydrolase II DYB08_09465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DYB08_09470 PF00885 6,7-dimethyl-8-ribityllumazine synthase DYB08_09475 PF01029 NusB family DYB08_09480 PF02769 AIR synthase related protein, C-terminal domain DYB08_09480 PF00586 AIR synthase related protein, N-terminal domain DYB08_09485 PF04608 Phosphatidylglycerophosphatase A DYB08_09490 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_09490 PF12804 MobA-like NTP transferase domain DYB08_09490 PF14602 Hexapeptide repeat of succinyl-transferase DYB08_09495 PF01380 SIS domain DYB08_09500 PF01177 Asp/Glu/Hydantoin racemase DYB08_09505 PF13419 Haloacid dehalogenase-like hydrolase DYB08_09515 PF00491 Arginase family DYB08_09520 PF01979 Amidohydrolase family DYB08_09525 PF00324 Amino acid permease DYB08_09530 PF00221 Aromatic amino acid lyase DYB08_09535 PF17392 Urocanase C-terminal domain DYB08_09535 PF17391 Urocanase N-terminal domain DYB08_09535 PF01175 Urocanase Rossmann-like domain DYB08_09540 PF05962 HutD DYB08_09545 PF00392 Bacterial regulatory proteins, gntR family DYB08_09545 PF07702 UTRA domain DYB08_09555 PF07683 Cobalamin synthesis protein cobW C-terminal domain DYB08_09555 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYB08_09565 PF00324 Amino acid permease DYB08_09575 PF14497 Glutathione S-transferase, C-terminal domain DYB08_09575 PF02798 Glutathione S-transferase, N-terminal domain DYB08_09580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYB08_09590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYB08_09595 PF04463 Protein of unknown function (DUF523) DYB08_09600 PF01554 MatE DYB08_09605 PF01758 Sodium Bile acid symporter family DYB08_09610 PF00857 Isochorismatase family DYB08_09615 PF00701 Dihydrodipicolinate synthetase family DYB08_09625 PF01259 SAICAR synthetase DYB08_09635 PF01226 Formate/nitrite transporter DYB08_09640 PF16193 AAA C-terminal domain DYB08_09640 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_09640 PF12002 MgsA AAA+ ATPase C terminal DYB08_09645 PF07995 Glucose / Sorbosone dehydrogenase DYB08_09650 PF03692 Putative zinc- or iron-chelating domain DYB08_09655 PF07043 Protein of unknown function (DUF1328) DYB08_09660 PF02230 Phospholipase/Carboxylesterase DYB08_09670 PF14815 NUDIX domain DYB08_09670 PF00633 Helix-hairpin-helix motif DYB08_09670 PF00730 HhH-GPD superfamily base excision DNA repair protein DYB08_09670 PF10576 Iron-sulfur binding domain of endonuclease III DYB08_09685 PF03352 Methyladenine glycosylase DYB08_09690 PF00107 Zinc-binding dehydrogenase DYB08_09690 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_09695 PF00155 Aminotransferase class I and II DYB08_09695 PF00392 Bacterial regulatory proteins, gntR family DYB08_09710 PF03466 LysR substrate binding domain DYB08_09710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_09715 PF00248 Aldo/keto reductase family DYB08_09720 PF07690 Major Facilitator Superfamily DYB08_09730 PF05173 Dihydrodipicolinate reductase, C-terminus DYB08_09730 PF01113 Dihydrodipicolinate reductase, N-terminus DYB08_09740 PF00684 DnaJ central domain DYB08_09740 PF00226 DnaJ domain DYB08_09740 PF01556 DnaJ C terminal domain DYB08_09750 PF00873 AcrB/AcrD/AcrF family DYB08_09755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_09760 PF00440 Bacterial regulatory proteins, tetR family DYB08_09760 PF08361 MAATS-type transcriptional repressor, C-terminal region DYB08_09765 PF00311 Phosphoenolpyruvate carboxylase DYB08_09770 PF00860 Permease family DYB08_09775 PF03466 LysR substrate binding domain DYB08_09775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_09790 PF00920 Dehydratase family DYB08_09795 PF00551 Formyl transferase DYB08_09795 PF02911 Formyl transferase, C-terminal domain DYB08_09800 PF01189 16S rRNA methyltransferase RsmB/F DYB08_09800 PF01029 NusB family DYB08_09810 PF00209 Sodium:neurotransmitter symporter family DYB08_09850 PF00579 tRNA synthetases class I (W and Y) DYB08_09855 PF03702 Anhydro-N-acetylmuramic acid kinase DYB08_09860 PF00561 alpha/beta hydrolase fold DYB08_09865 PF01521 Iron-sulphur cluster biosynthesis DYB08_09885 PF12848 ABC transporter DYB08_09885 PF00005 ABC transporter DYB08_09890 PF09335 SNARE associated Golgi protein DYB08_09900 PF01751 Toprim domain DYB08_09900 PF00204 DNA gyrase B DYB08_09900 PF00986 DNA gyrase B subunit, carboxyl terminus DYB08_09900 PF18053 DNA gyrase B subunit insert domain DYB08_09900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_09905 PF02463 RecF/RecN/SMC N terminal domain DYB08_09910 PF02768 DNA polymerase III beta subunit, C-terminal domain DYB08_09910 PF00712 DNA polymerase III beta subunit, N-terminal domain DYB08_09910 PF02767 DNA polymerase III beta subunit, central domain DYB08_09915 PF00308 Bacterial dnaA protein DYB08_09915 PF08299 Bacterial dnaA protein helix-turn-helix DYB08_09915 PF11638 DnaA N-terminal domain DYB08_09920 PF00468 Ribosomal protein L34 DYB08_09925 PF00825 Ribonuclease P DYB08_09930 PF01809 Putative membrane protein insertion efficiency factor DYB08_09935 PF02096 60Kd inner membrane protein DYB08_09935 PF14849 YidC periplasmic domain DYB08_09940 PF10396 GTP-binding protein TrmE N-terminus DYB08_09940 PF01926 50S ribosome-binding GTPase DYB08_09940 PF12631 MnmE helical domain DYB08_09945 PF02583 Metal-sensitive transcriptional repressor DYB08_09950 PF16916 Dimerisation domain of Zinc Transporter DYB08_09950 PF01545 Cation efflux family DYB08_09955 PF10411 Disulfide bond isomerase protein N-terminus DYB08_09955 PF13098 Thioredoxin-like domain DYB08_09965 PF00156 Phosphoribosyl transferase domain DYB08_09970 PF01979 Amidohydrolase family DYB08_09975 PF00355 Rieske [2Fe-2S] domain DYB08_09980 PF03738 Glutathionylspermidine synthase preATP-grasp DYB08_09990 PF03741 Integral membrane protein TerC family DYB08_09995 PF01569 PAP2 superfamily DYB08_10005 PF02875 Mur ligase family, glutamate ligase domain DYB08_10005 PF08245 Mur ligase middle domain DYB08_10005 PF01225 Mur ligase family, catalytic domain DYB08_10020 PF00731 AIR carboxylase DYB08_10025 PF02222 ATP-grasp domain DYB08_10025 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DYB08_10030 PF13406 Transglycosylase SLT domain DYB08_10050 PF00012 Hsp70 protein DYB08_10055 PF01025 GrpE DYB08_10095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DYB08_10135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_10140 PF01252 Signal peptidase (SPase) II DYB08_10145 PF00133 tRNA synthetases class I (I, L, M and V) DYB08_10145 PF06827 Zinc finger found in FPG and IleRS DYB08_10145 PF08264 Anticodon-binding domain of tRNA DYB08_10150 PF01687 Riboflavin kinase DYB08_10150 PF06574 FAD synthetase DYB08_10160 PF01048 Phosphorylase superfamily DYB08_10165 PF08362 YcdC-like protein, C-terminal region DYB08_10165 PF00440 Bacterial regulatory proteins, tetR family DYB08_10170 PF00005 ABC transporter DYB08_10175 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_10180 PF00296 Luciferase-like monooxygenase DYB08_10185 PF09084 NMT1/THI5 like DYB08_10190 PF09084 NMT1/THI5 like DYB08_10195 PF00583 Acetyltransferase (GNAT) family DYB08_10195 PF00696 Amino acid kinase family DYB08_10210 PF00106 short chain dehydrogenase DYB08_10215 PF13419 Haloacid dehalogenase-like hydrolase DYB08_10225 PF01323 DSBA-like thioredoxin domain DYB08_10230 PF08360 QacR-like protein, C-terminal region DYB08_10230 PF00440 Bacterial regulatory proteins, tetR family DYB08_10235 PF00440 Bacterial regulatory proteins, tetR family DYB08_10240 PF00175 Oxidoreductase NAD-binding domain DYB08_10245 PF00487 Fatty acid desaturase DYB08_10250 PF03725 3' exoribonuclease family, domain 2 DYB08_10250 PF01138 3' exoribonuclease family, domain 1 DYB08_10260 PF04185 Phosphoesterase family DYB08_10260 PF05506 Domain of unknown function (DUF756) DYB08_10270 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DYB08_10270 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DYB08_10275 PF01510 N-acetylmuramoyl-L-alanine amidase DYB08_10280 PF03023 Lipid II flippase MurJ DYB08_10285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_10285 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYB08_10290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_10290 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYB08_10295 PF13807 G-rich domain on putative tyrosine kinase DYB08_10295 PF02706 Chain length determinant protein DYB08_10295 PF13614 AAA domain DYB08_10300 PF01451 Low molecular weight phosphotyrosine protein phosphatase DYB08_10305 PF02563 Polysaccharide biosynthesis/export protein DYB08_10305 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DYB08_10305 PF10531 SLBB domain DYB08_10310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYB08_10310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYB08_10310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYB08_10315 PF01370 NAD dependent epimerase/dehydratase family DYB08_10340 PF02719 Polysaccharide biosynthesis protein DYB08_10340 PF08485 Polysaccharide biosynthesis protein C-terminal DYB08_10345 PF01370 NAD dependent epimerase/dehydratase family DYB08_10350 PF02350 UDP-N-acetylglucosamine 2-epimerase DYB08_10355 PF13579 Glycosyl transferase 4-like domain DYB08_10360 PF01370 NAD dependent epimerase/dehydratase family DYB08_10365 PF00953 Glycosyl transferase family 4 DYB08_10370 PF02397 Bacterial sugar transferase DYB08_10375 PF00483 Nucleotidyl transferase DYB08_10380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYB08_10380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYB08_10380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYB08_10395 PF16363 GDP-mannose 4,6 dehydratase DYB08_10400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_10400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_10400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_10400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_10405 PF02652 L-lactate permease DYB08_10410 PF00392 Bacterial regulatory proteins, gntR family DYB08_10410 PF07729 FCD domain DYB08_10415 PF01070 FMN-dependent dehydrogenase DYB08_10420 PF09330 D-lactate dehydrogenase, membrane binding DYB08_10420 PF01565 FAD binding domain DYB08_10425 PF00155 Aminotransferase class I and II DYB08_10435 PF07729 FCD domain DYB08_10435 PF00392 Bacterial regulatory proteins, gntR family DYB08_10445 PF00285 Citrate synthase, C-terminal domain DYB08_10450 PF00330 Aconitase family (aconitate hydratase) DYB08_10450 PF00694 Aconitase C-terminal domain DYB08_10470 PF00293 NUDIX domain DYB08_10495 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_10495 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_10510 PF00849 RNA pseudouridylate synthase DYB08_10525 PF07715 TonB-dependent Receptor Plug Domain DYB08_10525 PF00593 TonB dependent receptor DYB08_10535 PF01037 Lrp/AsnC ligand binding domain DYB08_10540 PF01266 FAD dependent oxidoreductase DYB08_10545 PF00842 Alanine racemase, C-terminal domain DYB08_10545 PF01168 Alanine racemase, N-terminal domain DYB08_10550 PF01042 Endoribonuclease L-PSP DYB08_10555 PF00324 Amino acid permease DYB08_10560 PF00324 Amino acid permease DYB08_10570 PF00171 Aldehyde dehydrogenase family DYB08_10575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYB08_10575 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYB08_10580 PF13193 AMP-binding enzyme C-terminal domain DYB08_10580 PF00501 AMP-binding enzyme DYB08_10585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_10585 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_10585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_10590 PF00378 Enoyl-CoA hydratase/isomerase DYB08_10595 PF00378 Enoyl-CoA hydratase/isomerase DYB08_10600 PF00083 Sugar (and other) transporter DYB08_10600 PF07690 Major Facilitator Superfamily DYB08_10605 PF00765 Autoinducer synthase DYB08_10615 PF03472 Autoinducer binding domain DYB08_10615 PF00196 Bacterial regulatory proteins, luxR family DYB08_10620 PF00501 AMP-binding enzyme DYB08_10625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_10625 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_10625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_10630 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_10630 PF08242 Methyltransferase domain DYB08_10630 PF00550 Phosphopantetheine attachment site DYB08_10630 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_10630 PF14765 Polyketide synthase dehydratase DYB08_10630 PF00975 Thioesterase domain DYB08_10630 PF16197 Ketoacyl-synthetase C-terminal extension DYB08_10635 PF00550 Phosphopantetheine attachment site DYB08_10635 PF07993 Male sterility protein DYB08_10635 PF00501 AMP-binding enzyme DYB08_10635 PF13193 AMP-binding enzyme C-terminal domain DYB08_10635 PF00668 Condensation domain DYB08_10640 PF00975 Thioesterase domain DYB08_10640 PF00550 Phosphopantetheine attachment site DYB08_10640 PF00668 Condensation domain DYB08_10640 PF13193 AMP-binding enzyme C-terminal domain DYB08_10640 PF00501 AMP-binding enzyme DYB08_10655 PF12697 Alpha/beta hydrolase family DYB08_10660 PF01648 4'-phosphopantetheinyl transferase superfamily DYB08_10675 PF01722 BolA-like protein DYB08_10685 PF13614 AAA domain DYB08_10700 PF09335 SNARE associated Golgi protein DYB08_10705 PF07681 DoxX DYB08_10710 PF04286 Protein of unknown function (DUF445) DYB08_10715 PF00958 GMP synthase C terminal domain DYB08_10715 PF02540 NAD synthase DYB08_10715 PF00117 Glutamine amidotransferase class-I DYB08_10720 PF01909 Nucleotidyltransferase domain DYB08_10720 PF13427 Domain of unknown function (DUF4111) DYB08_10725 PF03551 Transcriptional regulator PadR-like family DYB08_10735 PF02678 Pirin DYB08_10735 PF05726 Pirin C-terminal cupin domain DYB08_10755 PF03485 Arginyl tRNA synthetase N terminal domain DYB08_10755 PF05746 DALR anticodon binding domain DYB08_10755 PF00750 tRNA synthetases class I (R) DYB08_10760 PF00390 Malic enzyme, N-terminal domain DYB08_10760 PF03949 Malic enzyme, NAD binding domain DYB08_10790 PF01810 LysE type translocator DYB08_10795 PF00950 ABC 3 transport family DYB08_10800 PF00005 ABC transporter DYB08_10820 PF00119 ATP synthase A chain DYB08_10825 PF00137 ATP synthase subunit C DYB08_10830 PF00430 ATP synthase B/B' CF(0) DYB08_10835 PF00213 ATP synthase delta (OSCP) subunit DYB08_10840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYB08_10840 PF00306 ATP synthase alpha/beta chain, C terminal domain DYB08_10840 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYB08_10845 PF00231 ATP synthase DYB08_10850 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYB08_10850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYB08_10855 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DYB08_10865 PF00255 Glutathione peroxidase DYB08_10875 PF07690 Major Facilitator Superfamily DYB08_10880 PF00440 Bacterial regulatory proteins, tetR family DYB08_10885 PF00892 EamA-like transporter family DYB08_10890 PF01300 Telomere recombination DYB08_10895 PF17782 DprA winged helix domain DYB08_10895 PF02481 DNA recombination-mediator protein A DYB08_10905 PF01327 Polypeptide deformylase DYB08_10930 PF00440 Bacterial regulatory proteins, tetR family DYB08_10965 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_10975 PF03358 NADPH-dependent FMN reductase DYB08_10995 PF08497 Radical SAM N-terminal DYB08_10995 PF04055 Radical SAM superfamily DYB08_10995 PF11842 Domain of unknown function (DUF3362) DYB08_11010 PF11799 impB/mucB/samB family C-terminal domain DYB08_11010 PF11798 IMS family HHH motif DYB08_11010 PF00817 impB/mucB/samB family DYB08_11020 PF07690 Major Facilitator Superfamily DYB08_11025 PF03641 Possible lysine decarboxylase DYB08_11030 PF03471 Transporter associated domain DYB08_11030 PF03741 Integral membrane protein TerC family DYB08_11035 PF02810 SEC-C motif DYB08_11040 PF03458 UPF0126 domain DYB08_11045 PF07690 Major Facilitator Superfamily DYB08_11050 PF00521 DNA gyrase/topoisomerase IV, subunit A DYB08_11050 PF03989 DNA gyrase C-terminal domain, beta-propeller DYB08_11055 PF13193 AMP-binding enzyme C-terminal domain DYB08_11055 PF00501 AMP-binding enzyme DYB08_11070 PF00719 Inorganic pyrophosphatase DYB08_11075 PF03573 outer membrane porin, OprD family DYB08_11085 PF00701 Dihydrodipicolinate synthetase family DYB08_11095 PF00392 Bacterial regulatory proteins, gntR family DYB08_11095 PF00155 Aminotransferase class I and II DYB08_11100 PF13335 Magnesium chelatase, subunit ChlI C-terminal DYB08_11100 PF01078 Magnesium chelatase, subunit ChlI DYB08_11120 PF00665 Integrase core domain DYB08_11140 PF00582 Universal stress protein family DYB08_11145 PF01740 STAS domain DYB08_11145 PF00916 Sulfate permease family DYB08_11175 PF02899 Phage integrase, N-terminal SAM-like domain DYB08_11175 PF00589 Phage integrase family DYB08_11200 PF00665 Integrase core domain DYB08_11225 PF00809 Pterin binding enzyme DYB08_11230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_11230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_11230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_11230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_11245 PF00665 Integrase core domain DYB08_11275 PF00582 Universal stress protein family DYB08_11280 PF01740 STAS domain DYB08_11280 PF00916 Sulfate permease family DYB08_11290 PF07690 Major Facilitator Superfamily DYB08_11295 PF00440 Bacterial regulatory proteins, tetR family DYB08_11295 PF02909 Tetracyclin repressor-like, C-terminal domain DYB08_11320 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DYB08_11325 PF01636 Phosphotransferase enzyme family DYB08_11340 PF13335 Magnesium chelatase, subunit ChlI C-terminal DYB08_11340 PF01078 Magnesium chelatase, subunit ChlI DYB08_11350 PF00543 Nitrogen regulatory protein P-II DYB08_11355 PF00909 Ammonium Transporter Family DYB08_11360 PF03477 ATP cone domain DYB08_11365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DYB08_11365 PF01872 RibD C-terminal domain DYB08_11375 PF00677 Lumazine binding domain DYB08_11395 PF00883 Cytosol aminopeptidase family, catalytic domain DYB08_11395 PF02789 Cytosol aminopeptidase family, N-terminal domain DYB08_11405 PF03739 Lipopolysaccharide export system permease LptF/LptG DYB08_11410 PF01676 Metalloenzyme superfamily DYB08_11410 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DYB08_11415 PF03572 Peptidase family S41 DYB08_11415 PF00595 PDZ domain DYB08_11420 PF00072 Response regulator receiver domain DYB08_11420 PF02954 Bacterial regulatory protein, Fis family DYB08_11420 PF00158 Sigma-54 interaction domain DYB08_11425 PF00512 His Kinase A (phospho-acceptor) domain DYB08_11425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_11430 PF00196 Bacterial regulatory proteins, luxR family DYB08_11430 PF00072 Response regulator receiver domain DYB08_11435 PF00768 D-alanyl-D-alanine carboxypeptidase DYB08_11440 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_11445 PF00742 Homoserine dehydrogenase DYB08_11445 PF03447 Homoserine dehydrogenase, NAD binding domain DYB08_11445 PF01842 ACT domain DYB08_11450 PF13098 Thioredoxin-like domain DYB08_11450 PF10411 Disulfide bond isomerase protein N-terminus DYB08_11455 PF02899 Phage integrase, N-terminal SAM-like domain DYB08_11455 PF00589 Phage integrase family DYB08_11465 PF02421 Ferrous iron transport protein B DYB08_11465 PF07670 Nucleoside recognition DYB08_11465 PF07664 Ferrous iron transport protein B C terminus DYB08_11475 PF02875 Mur ligase family, glutamate ligase domain DYB08_11475 PF08245 Mur ligase middle domain DYB08_11480 PF01098 Cell cycle protein DYB08_11485 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYB08_11490 PF01258 Prokaryotic dksA/traR C4-type zinc finger DYB08_11495 PF00149 Calcineurin-like phosphoesterase DYB08_11500 PF00293 NUDIX domain DYB08_11505 PF01964 Radical SAM ThiC family DYB08_11505 PF13667 ThiC-associated domain DYB08_11520 PF00892 EamA-like transporter family DYB08_11525 PF02321 Outer membrane efflux protein DYB08_11530 PF01895 PhoU domain DYB08_11535 PF04362 Bacterial Fe(2+) trafficking DYB08_11540 PF14698 Argininosuccinate lyase C-terminal DYB08_11540 PF00206 Lyase DYB08_11545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_11545 PF06580 Histidine kinase DYB08_11545 PF07694 5TMR of 5TMR-LYT DYB08_11550 PF04397 LytTr DNA-binding domain DYB08_11550 PF00072 Response regulator receiver domain DYB08_11555 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DYB08_11555 PF03900 Porphobilinogen deaminase, C-terminal domain DYB08_11580 PF00816 H-NS histone family DYB08_11595 PF00263 Bacterial type II and III secretion system protein DYB08_11595 PF03958 Bacterial type II/III secretion system short domain DYB08_11600 PF12401 Protein of unknown function (DUF2662) DYB08_11600 PF00498 FHA domain DYB08_11605 PF13419 Haloacid dehalogenase-like hydrolase DYB08_11610 PF00425 chorismate binding enzyme DYB08_11610 PF04715 Anthranilate synthase component I, N terminal region DYB08_11635 PF03144 Elongation factor Tu domain 2 DYB08_11635 PF03143 Elongation factor Tu C-terminal domain DYB08_11635 PF00009 Elongation factor Tu GTP binding domain DYB08_11645 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DYB08_11650 PF02357 Transcription termination factor nusG DYB08_11650 PF00467 KOW motif DYB08_11655 PF03946 Ribosomal protein L11, N-terminal domain DYB08_11655 PF00298 Ribosomal protein L11, RNA binding domain DYB08_11660 PF00687 Ribosomal protein L1p/L10e family DYB08_11665 PF00466 Ribosomal protein L10 DYB08_11670 PF00542 Ribosomal protein L7/L12 C-terminal domain DYB08_11670 PF16320 Ribosomal protein L7/L12 dimerisation domain DYB08_11675 PF00562 RNA polymerase Rpb2, domain 6 DYB08_11675 PF10385 RNA polymerase beta subunit external 1 domain DYB08_11675 PF04563 RNA polymerase beta subunit DYB08_11675 PF04561 RNA polymerase Rpb2, domain 2 DYB08_11675 PF04565 RNA polymerase Rpb2, domain 3 DYB08_11675 PF04560 RNA polymerase Rpb2, domain 7 DYB08_11680 PF04997 RNA polymerase Rpb1, domain 1 DYB08_11680 PF04998 RNA polymerase Rpb1, domain 5 DYB08_11680 PF00623 RNA polymerase Rpb1, domain 2 DYB08_11680 PF04983 RNA polymerase Rpb1, domain 3 DYB08_11680 PF05000 RNA polymerase Rpb1, domain 4 DYB08_11710 PF00561 alpha/beta hydrolase fold DYB08_11715 PF13726 Na+-H+ antiporter family DYB08_11715 PF03553 Na+/H+ antiporter family DYB08_11730 PF00183 Hsp90 protein DYB08_11730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_11745 PF01323 DSBA-like thioredoxin domain DYB08_11755 PF09278 MerR, DNA binding DYB08_11755 PF00376 MerR family regulatory protein DYB08_11775 PF02803 Thiolase, C-terminal domain DYB08_11775 PF00108 Thiolase, N-terminal domain DYB08_11780 PF00378 Enoyl-CoA hydratase/isomerase DYB08_11780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_11780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_11805 PF02151 UvrB/uvrC motif DYB08_11805 PF08459 UvrC Helix-hairpin-helix N-terminal DYB08_11805 PF01541 GIY-YIG catalytic domain DYB08_11815 PF01066 CDP-alcohol phosphatidyltransferase DYB08_11820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYB08_11820 PF12833 Helix-turn-helix domain DYB08_11820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DYB08_11820 PF02805 Metal binding domain of Ada DYB08_11845 PF13533 Biotin-lipoyl like DYB08_11850 PF03652 Holliday junction resolvase DYB08_11855 PF02622 Uncharacterized ACR, COG1678 DYB08_11860 PF02463 RecF/RecN/SMC N terminal domain DYB08_11870 PF06865 Pyrimidine/purine nucleoside phosphorylase DYB08_11875 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYB08_11875 PF00588 SpoU rRNA Methylase family DYB08_11885 PF01121 Dephospho-CoA kinase DYB08_11890 PF06750 Bacterial Peptidase A24 N-terminal domain DYB08_11890 PF01478 Type IV leader peptidase family DYB08_11895 PF00482 Type II secretion system (T2SS), protein F DYB08_11900 PF00437 Type II/IV secretion system protein DYB08_11900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DYB08_11905 PF00121 Triosephosphate isomerase DYB08_11910 PF03840 Preprotein translocase SecG subunit DYB08_11930 PF17384 RimP C-terminal SH3 domain DYB08_11930 PF02576 RimP N-terminal domain DYB08_11935 PF08529 NusA N-terminal domain DYB08_11935 PF00575 S1 RNA binding domain DYB08_11935 PF13184 NusA-like KH domain DYB08_11940 PF11987 Translation-initiation factor 2 DYB08_11940 PF08364 Bacterial translation initiation factor IF-2 associated region DYB08_11940 PF00009 Elongation factor Tu GTP binding domain DYB08_11940 PF04760 Translation initiation factor IF-2, N-terminal region DYB08_11945 PF02033 Ribosome-binding factor A DYB08_11955 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DYB08_11965 PF00361 Proton-conducting membrane transporter DYB08_11970 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DYB08_11975 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DYB08_11975 PF13244 Domain of unknown function (DUF4040) DYB08_11975 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DYB08_11975 PF00361 Proton-conducting membrane transporter DYB08_11990 PF01502 Phosphoribosyl-AMP cyclohydrolase DYB08_11995 PF01494 FAD binding domain DYB08_12000 PF03109 ABC1 family DYB08_12010 PF01209 ubiE/COQ5 methyltransferase family DYB08_12020 PF03976 Polyphosphate kinase 2 (PPK2) DYB08_12030 PF17946 RecC C-terminal domain DYB08_12035 PF12705 PD-(D/E)XK nuclease superfamily DYB08_12035 PF00580 UvrD/REP helicase N-terminal domain DYB08_12035 PF13361 UvrD-like helicase C-terminal domain DYB08_12040 PF13538 UvrD-like helicase C-terminal domain DYB08_12050 PF00312 Ribosomal protein S15 DYB08_12055 PF03725 3' exoribonuclease family, domain 2 DYB08_12055 PF01138 3' exoribonuclease family, domain 1 DYB08_12055 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DYB08_12055 PF00013 KH domain DYB08_12055 PF00575 S1 RNA binding domain DYB08_12060 PF01544 CorA-like Mg2+ transporter protein DYB08_12070 PF00226 DnaJ domain DYB08_12070 PF01556 DnaJ C terminal domain DYB08_12080 PF01430 Hsp33 protein DYB08_12085 PF00999 Sodium/hydrogen exchanger family DYB08_12085 PF02254 TrkA-N domain DYB08_12090 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DYB08_12090 PF00271 Helicase conserved C-terminal domain DYB08_12090 PF18074 Primosomal protein N C-terminal domain DYB08_12090 PF00270 DEAD/DEAH box helicase DYB08_12090 PF17764 3′ DNA-binding domain (3′BD) DYB08_12095 PF00482 Type II secretion system (T2SS), protein F DYB08_12100 PF08334 Type II secretion system (T2SS), protein G DYB08_12100 PF07963 Prokaryotic N-terminal methylation motif DYB08_12115 PF01588 Putative tRNA binding domain DYB08_12120 PF00795 Carbon-nitrogen hydrolase DYB08_12125 PF00571 CBS domain DYB08_12125 PF03471 Transporter associated domain DYB08_12130 PF01206 Sulfurtransferase TusA DYB08_12145 PF01177 Asp/Glu/Hydantoin racemase DYB08_12155 PF00762 Ferrochelatase DYB08_12160 PF00753 Metallo-beta-lactamase superfamily DYB08_12165 PF03884 DNA gyrase inhibitor YacG DYB08_12185 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DYB08_12200 PF01197 Ribosomal protein L31 DYB08_12205 PF03109 ABC1 family DYB08_12210 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_12210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_12215 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_12215 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_12215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_12220 PF01554 MatE DYB08_12230 PF06969 HemN C-terminal domain DYB08_12230 PF04055 Radical SAM superfamily DYB08_12235 PF00106 short chain dehydrogenase DYB08_12240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_12240 PF03466 LysR substrate binding domain DYB08_12255 PF13193 AMP-binding enzyme C-terminal domain DYB08_12255 PF00501 AMP-binding enzyme DYB08_12260 PF00575 S1 RNA binding domain DYB08_12260 PF10150 Ribonuclease E/G family DYB08_12260 PF12111 Polyribonucleotide phosphorylase C terminal DYB08_12270 PF00849 RNA pseudouridylate synthase DYB08_12270 PF01479 S4 domain DYB08_12275 PF13419 Haloacid dehalogenase-like hydrolase DYB08_12280 PF08279 HTH domain DYB08_12280 PF13280 WYL domain DYB08_12285 PF02798 Glutathione S-transferase, N-terminal domain DYB08_12295 PF03466 LysR substrate binding domain DYB08_12295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_12300 PF12706 Beta-lactamase superfamily domain DYB08_12305 PF00141 Peroxidase DYB08_12310 PF02896 PEP-utilising enzyme, TIM barrel domain DYB08_12310 PF00391 PEP-utilising enzyme, mobile domain DYB08_12310 PF01590 GAF domain DYB08_12310 PF05524 PEP-utilising enzyme, N-terminal DYB08_12315 PF00293 NUDIX domain DYB08_12335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_12335 PF03466 LysR substrate binding domain DYB08_12345 PF00330 Aconitase family (aconitate hydratase) DYB08_12350 PF00694 Aconitase C-terminal domain DYB08_12360 PF00180 Isocitrate/isopropylmalate dehydrogenase DYB08_12375 PF01176 Translation initiation factor 1A / IF-1 DYB08_12385 PF01416 tRNA pseudouridine synthase DYB08_12405 PF01118 Semialdehyde dehydrogenase, NAD binding domain DYB08_12405 PF02774 Semialdehyde dehydrogenase, dimerisation domain DYB08_12415 PF00375 Sodium:dicarboxylate symporter family DYB08_12425 PF03279 Bacterial lipid A biosynthesis acyltransferase DYB08_12430 PF01810 LysE type translocator DYB08_12445 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_12445 PF00107 Zinc-binding dehydrogenase DYB08_12450 PF01638 HxlR-like helix-turn-helix DYB08_12460 PF01131 DNA topoisomerase DYB08_12460 PF08272 Topoisomerase I zinc-ribbon-like DYB08_12460 PF01751 Toprim domain DYB08_12460 PF01396 Topoisomerase DNA binding C4 zinc finger DYB08_12475 PF13361 UvrD-like helicase C-terminal domain DYB08_12475 PF00580 UvrD/REP helicase N-terminal domain DYB08_12480 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DYB08_12500 PF02254 TrkA-N domain DYB08_12500 PF00999 Sodium/hydrogen exchanger family DYB08_12505 PF00471 Ribosomal protein L33 DYB08_12510 PF00830 Ribosomal L28 family DYB08_12515 PF00171 Aldehyde dehydrogenase family DYB08_12525 PF01842 ACT domain DYB08_12525 PF00551 Formyl transferase DYB08_12535 PF01618 MotA/TolQ/ExbB proton channel family DYB08_12545 PF01625 Peptide methionine sulfoxide reductase DYB08_12555 PF00186 Dihydrofolate reductase DYB08_12560 PF00303 Thymidylate synthase DYB08_12575 PF01790 Prolipoprotein diacylglyceryl transferase DYB08_12595 PF00902 Sec-independent protein translocase protein (TatC) DYB08_12600 PF02416 mttA/Hcf106 family DYB08_12605 PF02416 mttA/Hcf106 family DYB08_12615 PF01725 Ham1 family DYB08_12625 PF07021 Methionine biosynthesis protein MetW DYB08_12625 PF00561 alpha/beta hydrolase fold DYB08_12630 PF00561 alpha/beta hydrolase fold DYB08_12635 PF08502 LeuA allosteric (dimerisation) domain DYB08_12635 PF00682 HMGL-like DYB08_12640 PF13640 2OG-Fe(II) oxygenase superfamily DYB08_12640 PF18331 PKHD-type hydroxylase C-terminal domain DYB08_12645 PF07715 TonB-dependent Receptor Plug Domain DYB08_12645 PF00593 TonB dependent receptor DYB08_12650 PF05697 Bacterial trigger factor protein (TF) DYB08_12650 PF05698 Bacterial trigger factor protein (TF) C-terminus DYB08_12650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_12655 PF00574 Clp protease DYB08_12660 PF10431 C-terminal, D2-small domain, of ClpB protein DYB08_12660 PF07724 AAA domain (Cdc48 subfamily) DYB08_12660 PF06689 ClpX C4-type zinc finger DYB08_12675 PF05681 Fumarate hydratase (Fumerase) DYB08_12675 PF05683 Fumarase C-terminus DYB08_12680 PF07085 DRTGG domain DYB08_12680 PF01515 Phosphate acetyl/butaryl transferase DYB08_12685 PF00871 Acetokinase family DYB08_12695 PF00920 Dehydratase family DYB08_12700 PF01081 KDPG and KHG aldolase DYB08_12705 PF02447 GntP family permease DYB08_12710 PF01202 Shikimate kinase DYB08_12715 PF00171 Aldehyde dehydrogenase family DYB08_12720 PF00171 Aldehyde dehydrogenase family DYB08_12725 PF00561 alpha/beta hydrolase fold DYB08_12735 PF00933 Glycosyl hydrolase family 3 N terminal domain DYB08_12740 PF17804 Tail specific protease N-terminal domain DYB08_12740 PF11818 C-terminal domain of tail specific protease (DUF3340) DYB08_12740 PF03572 Peptidase family S41 DYB08_12740 PF00595 PDZ domain DYB08_12745 PF13439 Glycosyltransferase Family 4 DYB08_12745 PF00534 Glycosyl transferases group 1 DYB08_12750 PF01569 PAP2 superfamily DYB08_12755 PF04384 Iron-sulphur cluster assembly DYB08_12760 PF00334 Nucleoside diphosphate kinase DYB08_12765 PF04055 Radical SAM superfamily DYB08_12775 PF13464 Domain of unknown function (DUF4115) DYB08_12780 PF04551 GcpE protein DYB08_12785 PF03129 Anticodon binding domain DYB08_12785 PF13393 Histidyl-tRNA synthetase DYB08_12795 PF13360 PQQ-like domain DYB08_12800 PF01926 50S ribosome-binding GTPase DYB08_12800 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DYB08_12815 PF00550 Phosphopantetheine attachment site DYB08_12820 PF00550 Phosphopantetheine attachment site DYB08_12830 PF13193 AMP-binding enzyme C-terminal domain DYB08_12830 PF00501 AMP-binding enzyme DYB08_12845 PF00221 Aromatic amino acid lyase DYB08_12875 PF04820 Tryptophan halogenase DYB08_12885 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_12885 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_12900 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_12900 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_12915 PF02556 Preprotein translocase subunit SecB DYB08_12920 PF00462 Glutaredoxin DYB08_12930 PF03193 RsgA GTPase DYB08_12935 PF00929 Exonuclease DYB08_12950 PF02321 Outer membrane efflux protein DYB08_12955 PF00005 ABC transporter DYB08_12955 PF12704 MacB-like periplasmic core domain DYB08_12955 PF02687 FtsX-like permease family DYB08_12985 PF08264 Anticodon-binding domain of tRNA DYB08_12985 PF00133 tRNA synthetases class I (I, L, M and V) DYB08_12985 PF09334 tRNA synthetases class I (M) DYB08_12985 PF13603 Leucyl-tRNA synthetase, Domain 2 DYB08_12995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYB08_12995 PF00205 Thiamine pyrophosphate enzyme, central domain DYB08_12995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYB08_13000 PF10369 Small subunit of acetolactate synthase DYB08_13005 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DYB08_13005 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DYB08_13010 PF03707 Bacterial signalling protein N terminal repeat DYB08_13010 PF00563 EAL domain DYB08_13010 PF00990 Diguanylate cyclase, GGDEF domain DYB08_13040 PF16658 Class II release factor RF3, C-terminal domain DYB08_13040 PF03144 Elongation factor Tu domain 2 DYB08_13040 PF00009 Elongation factor Tu GTP binding domain DYB08_13055 PF01026 TatD related DNase DYB08_13060 PF00330 Aconitase family (aconitate hydratase) DYB08_13060 PF00694 Aconitase C-terminal domain DYB08_13070 PF00899 ThiF family DYB08_13080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_13080 PF03466 LysR substrate binding domain DYB08_13090 PF01207 Dihydrouridine synthase (Dus) DYB08_13095 PF07690 Major Facilitator Superfamily DYB08_13105 PF00892 EamA-like transporter family DYB08_13110 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DYB08_13110 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DYB08_13115 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DYB08_13120 PF02233 NAD(P) transhydrogenase beta subunit DYB08_13125 PF00106 short chain dehydrogenase DYB08_13135 PF01261 Xylose isomerase-like TIM barrel DYB08_13140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYB08_13140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYB08_13145 PF00378 Enoyl-CoA hydratase/isomerase DYB08_13150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYB08_13150 PF01627 Hpt domain DYB08_13150 PF00512 His Kinase A (phospho-acceptor) domain DYB08_13150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_13150 PF00072 Response regulator receiver domain DYB08_13150 PF00672 HAMP domain DYB08_13155 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_13165 PF05958 tRNA (Uracil-5-)-methyltransferase DYB08_13170 PF13291 ACT domain DYB08_13170 PF04607 Region found in RelA / SpoT proteins DYB08_13170 PF02824 TGS domain DYB08_13180 PF03819 MazG nucleotide pyrophosphohydrolase domain DYB08_13190 PF01743 Poly A polymerase head domain DYB08_13190 PF12626 Polymerase A arginine-rich C-terminus DYB08_13190 PF12627 Probable RNA and SrmB- binding site of polymerase A DYB08_13195 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DYB08_13200 PF02548 Ketopantoate hydroxymethyltransferase DYB08_13205 PF02569 Pantoate-beta-alanine ligase DYB08_13210 PF03668 P-loop ATPase protein family DYB08_13215 PF00381 PTS HPr component phosphorylation site DYB08_13220 PF04751 Protein of unknown function (DUF615) DYB08_13225 PF13193 AMP-binding enzyme C-terminal domain DYB08_13225 PF00501 AMP-binding enzyme DYB08_13230 PF03129 Anticodon binding domain DYB08_13230 PF02824 TGS domain DYB08_13230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYB08_13230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYB08_13235 PF00707 Translation initiation factor IF-3, C-terminal domain DYB08_13235 PF05198 Translation initiation factor IF-3, N-terminal domain DYB08_13245 PF02798 Glutathione S-transferase, N-terminal domain DYB08_13245 PF00043 Glutathione S-transferase, C-terminal domain DYB08_13250 PF09335 SNARE associated Golgi protein DYB08_13255 PF07690 Major Facilitator Superfamily DYB08_13260 PF01632 Ribosomal protein L35 DYB08_13265 PF00453 Ribosomal protein L20 DYB08_13285 PF01409 tRNA synthetases class II core domain (F) DYB08_13285 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DYB08_13290 PF03484 tRNA synthetase B5 domain DYB08_13290 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DYB08_13290 PF01588 Putative tRNA binding domain DYB08_13290 PF03147 Ferredoxin-fold anticodon binding domain DYB08_13290 PF03483 B3/4 domain DYB08_13295 PF00216 Bacterial DNA-binding protein DYB08_13310 PF07497 Rho termination factor, RNA-binding domain DYB08_13310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYB08_13310 PF07498 Rho termination factor, N-terminal domain DYB08_13315 PF00085 Thioredoxin DYB08_13320 PF02541 Ppx/GppA phosphatase family DYB08_13325 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DYB08_13330 PF11734 TilS substrate C-terminal domain DYB08_13330 PF09179 TilS substrate binding domain DYB08_13330 PF01171 PP-loop family DYB08_13335 PF03807 NADP oxidoreductase coenzyme F420-dependent DYB08_13335 PF14748 Pyrroline-5-carboxylate reductase dimerisation DYB08_13340 PF02325 YGGT family DYB08_13345 PF01367 5'-3' exonuclease, C-terminal SAM fold DYB08_13345 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DYB08_13345 PF00476 DNA polymerase family A DYB08_13345 PF01612 3'-5' exonuclease DYB08_13365 PF00437 Type II/IV secretion system protein DYB08_13370 PF02566 OsmC-like protein DYB08_13375 PF01047 MarR family DYB08_13385 PF00795 Carbon-nitrogen hydrolase DYB08_13430 PF04552 Sigma-54, DNA binding domain DYB08_13430 PF00309 Sigma-54 factor, Activator interacting domain (AID) DYB08_13430 PF04963 Sigma-54 factor, core binding domain DYB08_13435 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DYB08_13440 PF01722 BolA-like protein DYB08_13445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYB08_13450 PF01634 ATP phosphoribosyltransferase DYB08_13455 PF00815 Histidinol dehydrogenase DYB08_13460 PF00155 Aminotransferase class I and II DYB08_13465 PF00425 chorismate binding enzyme DYB08_13465 PF04715 Anthranilate synthase component I, N terminal region DYB08_13505 PF00293 NUDIX domain DYB08_13515 PF00814 Glycoprotease family DYB08_13520 PF04445 Putative SAM-dependent methyltransferase DYB08_13530 PF00756 Putative esterase DYB08_13540 PF00834 Ribulose-phosphate 3 epimerase family DYB08_13555 PF07731 Multicopper oxidase DYB08_13555 PF07732 Multicopper oxidase DYB08_13555 PF00394 Multicopper oxidase DYB08_13560 PF05275 Copper resistance protein B precursor (CopB) DYB08_13570 PF00893 Small Multidrug Resistance protein DYB08_13575 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DYB08_13575 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYB08_13580 PF01960 ArgJ family DYB08_13585 PF02445 Quinolinate synthetase A protein DYB08_13610 PF00962 Adenosine/AMP deaminase DYB08_13615 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_13615 PF00107 Zinc-binding dehydrogenase DYB08_13620 PF03466 LysR substrate binding domain DYB08_13620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_13625 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_13625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_13625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_13635 PF07690 Major Facilitator Superfamily DYB08_13640 PF02515 CoA-transferase family III DYB08_13650 PF00890 FAD binding domain DYB08_13650 PF14537 Cytochrome c3 DYB08_13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_13655 PF03466 LysR substrate binding domain DYB08_13665 PF07690 Major Facilitator Superfamily DYB08_13680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_13680 PF03466 LysR substrate binding domain DYB08_13690 PF01546 Peptidase family M20/M25/M40 DYB08_13690 PF07687 Peptidase dimerisation domain DYB08_13695 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DYB08_13695 PF12833 Helix-turn-helix domain DYB08_13705 PF01810 LysE type translocator DYB08_13710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_13710 PF03466 LysR substrate binding domain DYB08_13720 PF01717 Cobalamin-independent synthase, Catalytic domain DYB08_13720 PF08267 Cobalamin-independent synthase, N-terminal domain DYB08_13725 PF01613 Flavin reductase like domain DYB08_13755 PF02567 Phenazine biosynthesis-like protein DYB08_13775 PF01011 PQQ enzyme repeat DYB08_13775 PF13360 PQQ-like domain DYB08_13860 PF13756 Stimulus-sensing domain DYB08_13860 PF13755 Sensor N-terminal transmembrane domain DYB08_13860 PF00512 His Kinase A (phospho-acceptor) domain DYB08_13860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_13860 PF00672 HAMP domain DYB08_13870 PF00268 Ribonucleotide reductase, small chain DYB08_13880 PF00317 Ribonucleotide reductase, all-alpha domain DYB08_13880 PF02867 Ribonucleotide reductase, barrel domain DYB08_13880 PF03477 ATP cone domain DYB08_13890 PF00072 Response regulator receiver domain DYB08_13890 PF00486 Transcriptional regulatory protein, C terminal DYB08_13895 PF00512 His Kinase A (phospho-acceptor) domain DYB08_13895 PF00672 HAMP domain DYB08_13895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_13905 PF17151 Periplasmic sensor domain DYB08_13905 PF00990 Diguanylate cyclase, GGDEF domain DYB08_13910 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DYB08_13915 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DYB08_13920 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DYB08_13920 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DYB08_13930 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYB08_13930 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DYB08_13930 PF10531 SLBB domain DYB08_13935 PF00384 Molybdopterin oxidoreductase DYB08_13935 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DYB08_13935 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DYB08_13940 PF00146 NADH dehydrogenase DYB08_13945 PF12838 4Fe-4S dicluster domain DYB08_13950 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DYB08_13955 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DYB08_13960 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DYB08_13960 PF00361 Proton-conducting membrane transporter DYB08_13965 PF00361 Proton-conducting membrane transporter DYB08_13970 PF00361 Proton-conducting membrane transporter DYB08_13980 PF00313 'Cold-shock' DNA-binding domain DYB08_13985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_13985 PF03466 LysR substrate binding domain DYB08_13990 PF00175 Oxidoreductase NAD-binding domain DYB08_13990 PF00970 Oxidoreductase FAD-binding domain DYB08_14005 PF05552 Conserved TM helix DYB08_14020 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_14025 PF13533 Biotin-lipoyl like DYB08_14050 PF09334 tRNA synthetases class I (M) DYB08_14050 PF01588 Putative tRNA binding domain DYB08_14060 PF10609 NUBPL iron-transfer P-loop NTPase DYB08_14070 PF01048 Phosphorylase superfamily DYB08_14085 PF00692 dUTPase DYB08_14120 PF01207 Dihydrouridine synthase (Dus) DYB08_14130 PF00448 SRP54-type protein, GTPase domain DYB08_14130 PF02881 SRP54-type protein, helical bundle domain DYB08_14130 PF02978 Signal peptide binding domain DYB08_14135 PF03309 Type III pantothenate kinase DYB08_14145 PF01925 Sulfite exporter TauE/SafE DYB08_14155 PF06470 SMC proteins Flexible Hinge Domain DYB08_14155 PF02463 RecF/RecN/SMC N terminal domain DYB08_14165 PF00533 BRCA1 C Terminus (BRCT) domain DYB08_14165 PF03120 NAD-dependent DNA ligase OB-fold domain DYB08_14165 PF01653 NAD-dependent DNA ligase adenylation domain DYB08_14165 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DYB08_14165 PF12826 Helix-hairpin-helix motif DYB08_14170 PF00210 Ferritin-like domain DYB08_14175 PF07690 Major Facilitator Superfamily DYB08_14180 PF00982 Glycosyltransferase family 20 DYB08_14185 PF02358 Trehalose-phosphatase DYB08_14190 PF08241 Methyltransferase domain DYB08_14190 PF12697 Alpha/beta hydrolase family DYB08_14195 PF06968 Biotin and Thiamin Synthesis associated domain DYB08_14195 PF04055 Radical SAM superfamily DYB08_14195 PF00202 Aminotransferase class-III DYB08_14200 PF00155 Aminotransferase class I and II DYB08_14215 PF00849 RNA pseudouridylate synthase DYB08_14215 PF01479 S4 domain DYB08_14220 PF04079 Segregation and condensation complex subunit ScpB DYB08_14225 PF02616 Segregation and condensation protein ScpA DYB08_14230 PF01300 Telomere recombination DYB08_14235 PF04315 Elongation factor P hydroxylase DYB08_14240 PF02620 Large ribosomal RNA subunit accumulation protein YceD DYB08_14245 PF01783 Ribosomal L32p protein family DYB08_14250 PF00698 Acyl transferase domain DYB08_14260 PF00550 Phosphopantetheine attachment site DYB08_14265 PF04972 BON domain DYB08_14265 PF01476 LysM domain DYB08_14270 PF02581 Thiamine monophosphate synthase DYB08_14270 PF08543 Phosphomethylpyrimidine kinase DYB08_14270 PF03070 TENA/THI-4/PQQC family DYB08_14280 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DYB08_14295 PF02261 Aspartate decarboxylase DYB08_14300 PF01195 Peptidyl-tRNA hydrolase DYB08_14305 PF01386 Ribosomal L25p family DYB08_14310 PF14572 Phosphoribosyl synthetase-associated domain DYB08_14310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DYB08_14335 PF00288 GHMP kinases N terminal domain DYB08_14335 PF08544 GHMP kinases C terminal DYB08_14340 PF03550 Outer membrane lipoprotein LolB DYB08_14350 PF01488 Shikimate / quinate 5-dehydrogenase DYB08_14350 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DYB08_14350 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DYB08_14355 PF10410 DnaB-helicase binding domain of primase DYB08_14355 PF08278 DNA primase DnaG DnaB-binding DYB08_14355 PF01807 CHC2 zinc finger DYB08_14355 PF08275 DNA primase catalytic core, N-terminal domain DYB08_14360 PF13525 Outer membrane lipoprotein DYB08_14365 PF00849 RNA pseudouridylate synthase DYB08_14365 PF01479 S4 domain DYB08_14375 PF03358 NADPH-dependent FMN reductase DYB08_14380 PF01668 SmpB protein DYB08_14385 PF01467 Cytidylyltransferase-like DYB08_14390 PF00037 4Fe-4S binding domain DYB08_14410 PF03466 LysR substrate binding domain DYB08_14410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_14415 PF00180 Isocitrate/isopropylmalate dehydrogenase DYB08_14430 PF00970 Oxidoreductase FAD-binding domain DYB08_14430 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_14430 PF00175 Oxidoreductase NAD-binding domain DYB08_14445 PF02540 NAD synthase DYB08_14445 PF00795 Carbon-nitrogen hydrolase DYB08_14455 PF05726 Pirin C-terminal cupin domain DYB08_14455 PF02678 Pirin DYB08_14465 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_14465 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_14475 PF00164 Ribosomal protein S12/S23 DYB08_14480 PF00177 Ribosomal protein S7p/S5e DYB08_14485 PF00009 Elongation factor Tu GTP binding domain DYB08_14485 PF03144 Elongation factor Tu domain 2 DYB08_14485 PF03764 Elongation factor G, domain IV DYB08_14485 PF14492 Elongation Factor G, domain II DYB08_14485 PF00679 Elongation factor G C-terminus DYB08_14490 PF03143 Elongation factor Tu C-terminal domain DYB08_14490 PF03144 Elongation factor Tu domain 2 DYB08_14490 PF00009 Elongation factor Tu GTP binding domain DYB08_14505 PF00583 Acetyltransferase (GNAT) family DYB08_14510 PF04376 Arginine-tRNA-protein transferase, N terminus DYB08_14510 PF04377 Arginine-tRNA-protein transferase, C terminus DYB08_14515 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DYB08_14520 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_14525 PF01580 FtsK/SpoIIIE family DYB08_14525 PF09397 Ftsk gamma domain DYB08_14525 PF17854 FtsK alpha domain DYB08_14525 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DYB08_14530 PF01810 LysE type translocator DYB08_14550 PF03776 Septum formation topological specificity factor MinE DYB08_14555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DYB08_14560 PF03775 Septum formation inhibitor MinC, C-terminal domain DYB08_14570 PF01553 Acyltransferase DYB08_14575 PF00691 OmpA family DYB08_14575 PF13488 Glycine zipper DYB08_14580 PF00580 UvrD/REP helicase N-terminal domain DYB08_14580 PF13361 UvrD-like helicase C-terminal domain DYB08_14585 PF00692 dUTPase DYB08_14590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_14590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_14590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_14590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_14595 PF00696 Amino acid kinase family DYB08_14605 PF13230 Glutamine amidotransferases class-II DYB08_14610 PF01814 Hemerythrin HHE cation binding domain DYB08_14625 PF03658 RnfH family Ubiquitin DYB08_14630 PF04355 SmpA / OmlA family DYB08_14635 PF01475 Ferric uptake regulator family DYB08_14640 PF00437 Type II/IV secretion system protein DYB08_14645 PF00437 Type II/IV secretion system protein DYB08_14650 PF01168 Alanine racemase, N-terminal domain DYB08_14660 PF12320 Type 5 capsule protein repressor C-terminal domain DYB08_14660 PF00149 Calcineurin-like phosphoesterase DYB08_14680 PF01370 NAD dependent epimerase/dehydratase family DYB08_14680 PF08338 Domain of unknown function (DUF1731) DYB08_14685 PF01266 FAD dependent oxidoreductase DYB08_14690 PF00490 Delta-aminolevulinic acid dehydratase DYB08_14695 PF03061 Thioesterase superfamily DYB08_14700 PF13533 Biotin-lipoyl like DYB08_14705 PF07690 Major Facilitator Superfamily DYB08_14775 PF00929 Exonuclease DYB08_14855 PF00145 C-5 cytosine-specific DNA methylase DYB08_14865 PF01695 IstB-like ATP binding protein DYB08_15060 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DYB08_15100 PF00712 DNA polymerase III beta subunit, N-terminal domain DYB08_15100 PF02767 DNA polymerase III beta subunit, central domain DYB08_15100 PF02768 DNA polymerase III beta subunit, C-terminal domain DYB08_15240 PF00083 Sugar (and other) transporter DYB08_15245 PF00701 Dihydrodipicolinate synthetase family DYB08_15255 PF04542 Sigma-70 region 2 DYB08_15255 PF08281 Sigma-70, region 4 DYB08_15265 PF00593 TonB dependent receptor DYB08_15265 PF07715 TonB-dependent Receptor Plug Domain DYB08_15285 PF01126 Heme oxygenase DYB08_15310 PF13520 Amino acid permease DYB08_15315 PF02574 Homocysteine S-methyltransferase DYB08_15325 PF06039 Malate:quinone oxidoreductase (Mqo) DYB08_15330 PF00732 GMC oxidoreductase DYB08_15330 PF05199 GMC oxidoreductase DYB08_15335 PF00171 Aldehyde dehydrogenase family DYB08_15340 PF13977 BetI-type transcriptional repressor, C-terminal DYB08_15340 PF00440 Bacterial regulatory proteins, tetR family DYB08_15345 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_15350 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_15360 PF03061 Thioesterase superfamily DYB08_15370 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYB08_15370 PF07683 Cobalamin synthesis protein cobW C-terminal domain DYB08_15375 PF00375 Sodium:dicarboxylate symporter family DYB08_15380 PF07152 YaeQ protein DYB08_15385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_15390 PF14883 Hypothetical glycosyl hydrolase family 13 DYB08_15390 PF01522 Polysaccharide deacetylase DYB08_15395 PF00535 Glycosyl transferase family 2 DYB08_15405 PF00378 Enoyl-CoA hydratase/isomerase DYB08_15420 PF01614 Bacterial transcriptional regulator DYB08_15420 PF09339 IclR helix-turn-helix domain DYB08_15425 PF00355 Rieske [2Fe-2S] domain DYB08_15435 PF00355 Rieske [2Fe-2S] domain DYB08_15445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYB08_15450 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_15450 PF14759 Reductase C-terminal DYB08_15455 PF07690 Major Facilitator Superfamily DYB08_15465 PF12697 Alpha/beta hydrolase family DYB08_15475 PF03447 Homoserine dehydrogenase, NAD binding domain DYB08_15475 PF01958 Domain of unknown function DUF108 DYB08_15480 PF00171 Aldehyde dehydrogenase family DYB08_15485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYB08_15485 PF00205 Thiamine pyrophosphate enzyme, central domain DYB08_15485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYB08_15495 PF07690 Major Facilitator Superfamily DYB08_15500 PF01327 Polypeptide deformylase DYB08_15505 PF04960 Glutaminase DYB08_15510 PF02311 AraC-like ligand binding domain DYB08_15510 PF12833 Helix-turn-helix domain DYB08_15515 PF07690 Major Facilitator Superfamily DYB08_15520 PF01263 Aldose 1-epimerase DYB08_15535 PF03466 LysR substrate binding domain DYB08_15535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_15545 PF07690 Major Facilitator Superfamily DYB08_15550 PF00456 Transketolase, thiamine diphosphate binding domain DYB08_15555 PF02780 Transketolase, C-terminal domain DYB08_15555 PF02779 Transketolase, pyrimidine binding domain DYB08_15560 PF02310 B12 binding domain DYB08_15560 PF00809 Pterin binding enzyme DYB08_15560 PF02607 B12 binding domain DYB08_15560 PF02574 Homocysteine S-methyltransferase DYB08_15560 PF02965 Vitamin B12 dependent methionine synthase, activation domain DYB08_15565 PF01384 Phosphate transporter family DYB08_15570 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_15585 PF03781 Sulfatase-modifying factor enzyme 1 DYB08_15590 PF00884 Sulfatase DYB08_15600 PF01521 Iron-sulphur cluster biosynthesis DYB08_15600 PF01106 NifU-like domain DYB08_15605 PF07715 TonB-dependent Receptor Plug Domain DYB08_15605 PF00593 TonB dependent receptor DYB08_15615 PF00561 alpha/beta hydrolase fold DYB08_15620 PF00484 Carbonic anhydrase DYB08_15625 PF13472 GDSL-like Lipase/Acylhydrolase family DYB08_15630 PF00005 ABC transporter DYB08_15640 PF01694 Rhomboid family DYB08_15645 PF00912 Transglycosylase DYB08_15650 PF13089 Polyphosphate kinase N-terminal domain DYB08_15650 PF17941 Polyphosphate kinase C-terminal domain 1 DYB08_15650 PF13090 Polyphosphate kinase C-terminal domain 2 DYB08_15650 PF02503 Polyphosphate kinase middle domain DYB08_15660 PF03466 LysR substrate binding domain DYB08_15660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_15665 PF00561 alpha/beta hydrolase fold DYB08_15670 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_15670 PF18113 Rubredoxin binding C-terminal domain DYB08_15675 PF00301 Rubredoxin DYB08_15690 PF00152 tRNA synthetases class II (D, K and N) DYB08_15690 PF01336 OB-fold nucleic acid binding domain DYB08_15695 PF14052 Capsule assembly protein Wzi DYB08_15705 PF01507 Phosphoadenosine phosphosulfate reductase family DYB08_15710 PF00009 Elongation factor Tu GTP binding domain DYB08_15725 PF03600 Citrate transporter DYB08_15735 PF01595 Cyclin M transmembrane N-terminal domain DYB08_15735 PF03471 Transporter associated domain DYB08_15735 PF00571 CBS domain DYB08_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_15740 PF03466 LysR substrate binding domain DYB08_15745 PF00463 Isocitrate lyase family DYB08_15760 PF01774 UreD urease accessory protein DYB08_15765 PF00547 Urease, gamma subunit DYB08_15770 PF00699 Urease beta subunit DYB08_15775 PF00449 Urease alpha-subunit, N-terminal domain DYB08_15775 PF01979 Amidohydrolase family DYB08_15780 PF05194 UreE urease accessory protein, C-terminal domain DYB08_15780 PF02814 UreE urease accessory protein, N-terminal domain DYB08_15785 PF01730 UreF DYB08_15790 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYB08_15805 PF00905 Penicillin binding protein transpeptidase domain DYB08_15805 PF03717 Penicillin-binding Protein dimerisation domain DYB08_15820 PF05191 Adenylate kinase, active site lid DYB08_15830 PF00633 Helix-hairpin-helix motif DYB08_15830 PF10576 Iron-sulfur binding domain of endonuclease III DYB08_15830 PF00730 HhH-GPD superfamily base excision DNA repair protein DYB08_15835 PF04060 Putative Fe-S cluster DYB08_15840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DYB08_15840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DYB08_15850 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DYB08_15855 PF02590 Predicted SPOUT methyltransferase DYB08_15865 PF02190 ATP-dependent protease La (LON) substrate-binding domain DYB08_15865 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_15865 PF05362 Lon protease (S16) C-terminal proteolytic domain DYB08_15870 PF03895 YadA-like membrane anchor domain DYB08_15870 PF05658 Head domain of trimeric autotransporter adhesin DYB08_15870 PF13018 Extended Signal Peptide of Type V secretion system DYB08_15870 PF05662 Coiled stalk of trimeric autotransporter adhesin DYB08_15880 PF01812 5-formyltetrahydrofolate cyclo-ligase family DYB08_16205 PF01551 Peptidase family M23 DYB08_16205 PF08525 Opacity-associated protein A N-terminal motif DYB08_16205 PF01476 LysM domain DYB08_16260 PF08019 Phosphoethanolamine transferase EptA/EptB DYB08_16260 PF00884 Sulfatase DYB08_16295 PF00557 Metallopeptidase family M24 DYB08_16295 PF05195 Aminopeptidase P, N-terminal domain DYB08_16300 PF01494 FAD binding domain DYB08_16305 PF01494 FAD binding domain DYB08_16315 PF13411 MerR HTH family regulatory protein DYB08_16325 PF01810 LysE type translocator DYB08_16330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_16330 PF03466 LysR substrate binding domain DYB08_16340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYB08_16345 PF02021 Uncharacterised protein family UPF0102 DYB08_16350 PF04972 BON domain DYB08_16360 PF00293 NUDIX domain DYB08_16360 PF09297 NADH pyrophosphatase zinc ribbon domain DYB08_16370 PF00929 Exonuclease DYB08_16375 PF01464 Transglycosylase SLT domain DYB08_16375 PF01464 Transglycosylase SLT domain DYB08_16375 PF01476 LysM domain DYB08_16375 PF01476 LysM domain DYB08_16380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYB08_16385 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_16390 PF12911 N-terminal TM domain of oligopeptide transport permease C DYB08_16390 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_16395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYB08_16395 PF00005 ABC transporter DYB08_16400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_16400 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_16405 PF07715 TonB-dependent Receptor Plug Domain DYB08_16405 PF00593 TonB dependent receptor DYB08_16415 PF00929 Exonuclease DYB08_16420 PF01979 Amidohydrolase family DYB08_16425 PF00990 Diguanylate cyclase, GGDEF domain DYB08_16425 PF00563 EAL domain DYB08_16425 PF01590 GAF domain DYB08_16425 PF00360 Phytochrome region DYB08_16430 PF00764 Arginosuccinate synthase DYB08_16435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_16435 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_16450 PF13610 DDE domain DYB08_16455 PF00589 Phage integrase family DYB08_16455 PF13495 Phage integrase, N-terminal SAM-like domain DYB08_16460 PF00583 Acetyltransferase (GNAT) family DYB08_16475 PF13610 DDE domain DYB08_16490 PF00239 Resolvase, N terminal domain DYB08_16490 PF02796 Helix-turn-helix domain of resolvase DYB08_16495 PF13610 DDE domain DYB08_16505 PF00583 Acetyltransferase (GNAT) family DYB08_16520 PF13610 DDE domain DYB08_16530 PF00106 short chain dehydrogenase DYB08_16540 PF00440 Bacterial regulatory proteins, tetR family DYB08_16540 PF17932 Tetracyclin repressor-like, C-terminal domain DYB08_16545 PF17954 Quercetinase C-terminal cupin domain DYB08_16545 PF02678 Pirin DYB08_16555 PF00106 short chain dehydrogenase DYB08_16560 PF00743 Flavin-binding monooxygenase-like DYB08_16570 PF00860 Permease family DYB08_16575 PF00962 Adenosine/AMP deaminase DYB08_16580 PF01292 Prokaryotic cytochrome b561 DYB08_16590 PF01351 Ribonuclease HII DYB08_16595 PF02599 Global regulator protein family DYB08_16600 PF00696 Amino acid kinase family DYB08_16600 PF13840 ACT domain DYB08_16600 PF01842 ACT domain DYB08_16605 PF02272 DHHA1 domain DYB08_16605 PF01411 tRNA synthetases class II (A) DYB08_16605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYB08_16610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DYB08_16610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DYB08_16615 PF13393 Histidyl-tRNA synthetase DYB08_16620 PF00709 Adenylosuccinate synthetase DYB08_16635 PF00248 Aldo/keto reductase family DYB08_16645 PF13545 Crp-like helix-turn-helix domain DYB08_16645 PF00027 Cyclic nucleotide-binding domain DYB08_16650 PF02566 OsmC-like protein DYB08_16665 PF17871 AAA lid domain DYB08_16665 PF02861 Clp amino terminal domain, pathogenicity island component DYB08_16665 PF07724 AAA domain (Cdc48 subfamily) DYB08_16665 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_16665 PF10431 C-terminal, D2-small domain, of ClpB protein DYB08_16680 PF01170 Putative RNA methylase family UPF0020 DYB08_16680 PF02926 THUMP domain DYB08_16680 PF10672 S-adenosylmethionine-dependent methyltransferase DYB08_16690 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYB08_16690 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYB08_16695 PF01979 Amidohydrolase family DYB08_16700 PF00691 OmpA family DYB08_16700 PF13488 Glycine zipper DYB08_16710 PF13417 Glutathione S-transferase, N-terminal domain DYB08_16710 PF00043 Glutathione S-transferase, C-terminal domain DYB08_16715 PF02390 Putative methyltransferase DYB08_16725 PF02798 Glutathione S-transferase, N-terminal domain DYB08_16725 PF00043 Glutathione S-transferase, C-terminal domain DYB08_16735 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_16735 PF13192 Thioredoxin domain DYB08_16755 PF00578 AhpC/TSA family DYB08_16755 PF10417 C-terminal domain of 1-Cys peroxiredoxin DYB08_16760 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DYB08_16760 PF00270 DEAD/DEAH box helicase DYB08_16760 PF00271 Helicase conserved C-terminal domain DYB08_16760 PF04408 Helicase associated domain (HA2) DYB08_16760 PF11898 Domain of unknown function (DUF3418) DYB08_16765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYB08_16765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DYB08_16775 PF07690 Major Facilitator Superfamily DYB08_16780 PF03594 Benzoate membrane transport protein DYB08_16785 PF00106 short chain dehydrogenase DYB08_16790 PF00175 Oxidoreductase NAD-binding domain DYB08_16790 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_16790 PF00970 Oxidoreductase FAD-binding domain DYB08_16795 PF00866 Ring hydroxylating beta subunit DYB08_16800 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DYB08_16800 PF00355 Rieske [2Fe-2S] domain DYB08_16805 PF03466 LysR substrate binding domain DYB08_16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_16810 PF00403 Heavy-metal-associated domain DYB08_16815 PF00403 Heavy-metal-associated domain DYB08_16820 PF00376 MerR family regulatory protein DYB08_16820 PF09278 MerR, DNA binding DYB08_16860 PF02601 Exonuclease VII, large subunit DYB08_16860 PF13742 OB-fold nucleic acid binding domain DYB08_16895 PF01810 LysE type translocator DYB08_16900 PF00313 'Cold-shock' DNA-binding domain DYB08_16920 PF03807 NADP oxidoreductase coenzyme F420-dependent DYB08_16920 PF14748 Pyrroline-5-carboxylate reductase dimerisation DYB08_16950 PF07690 Major Facilitator Superfamily DYB08_16955 PF01638 HxlR-like helix-turn-helix DYB08_17090 PF01695 IstB-like ATP binding protein DYB08_17330 PF00589 Phage integrase family DYB08_17340 PF09190 DALR domain DYB08_17340 PF01406 tRNA synthetases class I (C) catalytic domain DYB08_17345 PF00571 CBS domain DYB08_17345 PF01380 SIS domain DYB08_17360 PF03968 OstA-like protein DYB08_17365 PF00005 ABC transporter DYB08_17365 PF12399 Branched-chain amino acid ATP-binding cassette transporter DYB08_17370 PF02321 Outer membrane efflux protein DYB08_17375 PF03412 Peptidase C39 family DYB08_17375 PF00664 ABC transporter transmembrane region DYB08_17375 PF00005 ABC transporter DYB08_17385 PF01205 Uncharacterized protein family UPF0029 DYB08_17390 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_17400 PF01596 O-methyltransferase DYB08_17410 PF00037 4Fe-4S binding domain DYB08_17410 PF11953 Domain of unknown function (DUF3470) DYB08_17420 PF05192 MutS domain III DYB08_17420 PF05188 MutS domain II DYB08_17420 PF05190 MutS family domain IV DYB08_17420 PF00488 MutS domain V DYB08_17420 PF01624 MutS domain I DYB08_17425 PF01037 Lrp/AsnC ligand binding domain DYB08_17430 PF00892 EamA-like transporter family DYB08_17435 PF00563 EAL domain DYB08_17435 PF00990 Diguanylate cyclase, GGDEF domain DYB08_17435 PF03707 Bacterial signalling protein N terminal repeat DYB08_17440 PF03279 Bacterial lipid A biosynthesis acyltransferase DYB08_17455 PF07690 Major Facilitator Superfamily DYB08_17475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_17475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_17495 PF13419 Haloacid dehalogenase-like hydrolase DYB08_17510 PF04717 Type VI secretion system, phage-baseplate injector DYB08_17510 PF16671 Actin cross-linking domain DYB08_17515 PF05593 RHS Repeat DYB08_17515 PF03527 RHS protein DYB08_17515 PF14220 Domain of unknown function (DUF4329) DYB08_17530 PF03466 LysR substrate binding domain DYB08_17530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_17535 PF01566 Natural resistance-associated macrophage protein DYB08_17540 PF03746 LamB/YcsF family DYB08_17545 PF07286 Protein of unknown function (DUF1445) DYB08_17555 PF00364 Biotin-requiring enzyme DYB08_17555 PF00289 Biotin carboxylase, N-terminal domain DYB08_17555 PF02785 Biotin carboxylase C-terminal domain DYB08_17555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_17560 PF00654 Voltage gated chloride channel DYB08_17585 PF00440 Bacterial regulatory proteins, tetR family DYB08_17595 PF00107 Zinc-binding dehydrogenase DYB08_17595 PF13823 Alcohol dehydrogenase GroES-associated DYB08_17595 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_17610 PF00289 Biotin carboxylase, N-terminal domain DYB08_17610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_17610 PF02785 Biotin carboxylase C-terminal domain DYB08_17615 PF02525 Flavodoxin-like fold DYB08_17635 PF01402 Ribbon-helix-helix protein, copG family DYB08_17635 PF08753 NikR C terminal nickel binding domain DYB08_17640 PF01425 Amidase DYB08_17645 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_17650 PF00005 ABC transporter DYB08_17725 PF00691 OmpA family DYB08_17725 PF01389 OmpA-like transmembrane domain DYB08_17735 PF10431 C-terminal, D2-small domain, of ClpB protein DYB08_17735 PF17871 AAA lid domain DYB08_17735 PF07724 AAA domain (Cdc48 subfamily) DYB08_17735 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_17765 PF03466 LysR substrate binding domain DYB08_17765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_17775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DYB08_17780 PF07690 Major Facilitator Superfamily DYB08_17795 PF02677 Epoxyqueuosine reductase QueH DYB08_17810 PF00376 MerR family regulatory protein DYB08_17810 PF09278 MerR, DNA binding DYB08_17825 PF00701 Dihydrodipicolinate synthetase family DYB08_17835 PF00392 Bacterial regulatory proteins, gntR family DYB08_17840 PF05544 Proline racemase DYB08_17845 PF01266 FAD dependent oxidoreductase DYB08_17855 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_17855 PF04324 BFD-like [2Fe-2S] binding domain DYB08_17865 PF00083 Sugar (and other) transporter DYB08_17870 PF00171 Aldehyde dehydrogenase family DYB08_17875 PF13520 Amino acid permease DYB08_17880 PF03315 Serine dehydratase beta chain DYB08_17880 PF03313 Serine dehydratase alpha chain DYB08_17885 PF01575 MaoC like domain DYB08_17885 PF00171 Aldehyde dehydrogenase family DYB08_17890 PF05138 Phenylacetic acid catabolic protein DYB08_17895 PF06243 Phenylacetic acid degradation B DYB08_17900 PF05138 Phenylacetic acid catabolic protein DYB08_17905 PF01883 Iron-sulfur cluster assembly protein DYB08_17910 PF00970 Oxidoreductase FAD-binding domain DYB08_17910 PF00175 Oxidoreductase NAD-binding domain DYB08_17910 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_17915 PF00378 Enoyl-CoA hydratase/isomerase DYB08_17920 PF00378 Enoyl-CoA hydratase/isomerase DYB08_17925 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_17925 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DYB08_17925 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_17930 PF00108 Thiolase, N-terminal domain DYB08_17930 PF02803 Thiolase, C-terminal domain DYB08_17935 PF00501 AMP-binding enzyme DYB08_17935 PF14535 AMP-binding enzyme C-terminal domain DYB08_17940 PF08223 PaaX-like protein C-terminal domain DYB08_17940 PF07848 PaaX-like protein DYB08_17945 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_17950 PF03061 Thioesterase superfamily DYB08_17990 PF00199 Catalase DYB08_17995 PF01292 Prokaryotic cytochrome b561 DYB08_18015 PF12697 Alpha/beta hydrolase family DYB08_18020 PF01613 Flavin reductase like domain DYB08_18025 PF00296 Luciferase-like monooxygenase DYB08_18030 PF00171 Aldehyde dehydrogenase family DYB08_18040 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DYB08_18050 PF00171 Aldehyde dehydrogenase family DYB08_18055 PF02627 Carboxymuconolactone decarboxylase family DYB08_18060 PF03466 LysR substrate binding domain DYB08_18060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18065 PF02525 Flavodoxin-like fold DYB08_18070 PF09339 IclR helix-turn-helix domain DYB08_18070 PF01614 Bacterial transcriptional regulator DYB08_18075 PF01494 FAD binding domain DYB08_18080 PF00392 Bacterial regulatory proteins, gntR family DYB08_18080 PF07702 UTRA domain DYB08_18090 PF00005 ABC transporter DYB08_18090 PF08402 TOBE domain DYB08_18095 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_18100 PF01266 FAD dependent oxidoreductase DYB08_18105 PF00266 Aminotransferase class-V DYB08_18110 PF13419 Haloacid dehalogenase-like hydrolase DYB08_18115 PF07690 Major Facilitator Superfamily DYB08_18120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_18120 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_18120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_18125 PF02515 CoA-transferase family III DYB08_18140 PF09339 IclR helix-turn-helix domain DYB08_18145 PF00378 Enoyl-CoA hydratase/isomerase DYB08_18150 PF03060 Nitronate monooxygenase DYB08_18155 PF07690 Major Facilitator Superfamily DYB08_18160 PF09339 IclR helix-turn-helix domain DYB08_18165 PF02803 Thiolase, C-terminal domain DYB08_18165 PF00108 Thiolase, N-terminal domain DYB08_18170 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DYB08_18170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_18170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_18180 PF00378 Enoyl-CoA hydratase/isomerase DYB08_18185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_18185 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_18185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_18190 PF07690 Major Facilitator Superfamily DYB08_18195 PF01144 Coenzyme A transferase DYB08_18200 PF01144 Coenzyme A transferase DYB08_18210 PF07690 Major Facilitator Superfamily DYB08_18220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_18220 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYB08_18220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_18220 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_18235 PF03466 LysR substrate binding domain DYB08_18235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18240 PF00682 HMGL-like DYB08_18245 PF02785 Biotin carboxylase C-terminal domain DYB08_18245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_18245 PF00364 Biotin-requiring enzyme DYB08_18245 PF00289 Biotin carboxylase, N-terminal domain DYB08_18250 PF00378 Enoyl-CoA hydratase/isomerase DYB08_18255 PF01039 Carboxyl transferase domain DYB08_18260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_18260 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_18260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_18265 PF00440 Bacterial regulatory proteins, tetR family DYB08_18270 PF00501 AMP-binding enzyme DYB08_18270 PF13193 AMP-binding enzyme C-terminal domain DYB08_18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18290 PF03466 LysR substrate binding domain DYB08_18320 PF02464 Competence-damaged protein DYB08_18320 PF00994 Probable molybdopterin binding domain DYB08_18320 PF18146 Damage-inducible protein CinA KH domain DYB08_18330 PF00199 Catalase DYB08_18330 PF18011 C-terminal domain found in long catalases DYB08_18330 PF06628 Catalase-related immune-responsive DYB08_18355 PF00717 Peptidase S24-like DYB08_18365 PF13404 AsnC-type helix-turn-helix domain DYB08_18365 PF01037 Lrp/AsnC ligand binding domain DYB08_18375 PF00072 Response regulator receiver domain DYB08_18375 PF09308 LuxQ, periplasmic DYB08_18375 PF00512 His Kinase A (phospho-acceptor) domain DYB08_18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_18380 PF00072 Response regulator receiver domain DYB08_18395 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_18400 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_18405 PF00005 ABC transporter DYB08_18410 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_18415 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_18425 PF03466 LysR substrate binding domain DYB08_18425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18430 PF01810 LysE type translocator DYB08_18440 PF00266 Aminotransferase class-V DYB08_18450 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_18455 PF00581 Rhodanese-like domain DYB08_18465 PF03466 LysR substrate binding domain DYB08_18465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18470 PF02798 Glutathione S-transferase, N-terminal domain DYB08_18475 PF02798 Glutathione S-transferase, N-terminal domain DYB08_18475 PF14834 Glutathione S-transferase, C-terminal domain DYB08_18480 PF03466 LysR substrate binding domain DYB08_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18485 PF03788 LrgA family DYB08_18490 PF04172 LrgB-like family DYB08_18495 PF00155 Aminotransferase class I and II DYB08_18495 PF00392 Bacterial regulatory proteins, gntR family DYB08_18510 PF07690 Major Facilitator Superfamily DYB08_18515 PF16957 Malonate decarboxylase, alpha subunit, transporter DYB08_18520 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DYB08_18525 PF06857 Malonate decarboxylase delta subunit (MdcD) DYB08_18530 PF01039 Carboxyl transferase domain DYB08_18540 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DYB08_18545 PF00698 Acyl transferase domain DYB08_18560 PF03466 LysR substrate binding domain DYB08_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18565 PF00392 Bacterial regulatory proteins, gntR family DYB08_18565 PF00155 Aminotransferase class I and II DYB08_18575 PF02322 Cytochrome bd terminal oxidase subunit II DYB08_18580 PF01654 Cytochrome bd terminal oxidase subunit I DYB08_18595 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_18595 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_18595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_18600 PF00296 Luciferase-like monooxygenase DYB08_18605 PF00083 Sugar (and other) transporter DYB08_18630 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DYB08_18635 PF00005 ABC transporter DYB08_18640 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_18645 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DYB08_18650 PF01177 Asp/Glu/Hydantoin racemase DYB08_18655 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DYB08_18665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18665 PF03466 LysR substrate binding domain DYB08_18675 PF01979 Amidohydrolase family DYB08_18675 PF13382 Adenine deaminase C-terminal domain DYB08_18685 PF03960 ArsC family DYB08_18690 PF01022 Bacterial regulatory protein, arsR family DYB08_18695 PF01758 Sodium Bile acid symporter family DYB08_18700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18700 PF03466 LysR substrate binding domain DYB08_18715 PF13192 Thioredoxin domain DYB08_18715 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_18730 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_18735 PF00588 SpoU rRNA Methylase family DYB08_18740 PF02811 PHP domain DYB08_18740 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYB08_18740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYB08_18740 PF14579 Helix-hairpin-helix motif DYB08_18740 PF01336 OB-fold nucleic acid binding domain DYB08_18745 PF17763 Glutaminase/Asparaginase C-terminal domain DYB08_18745 PF00710 Asparaginase, N-terminal DYB08_18765 PF00375 Sodium:dicarboxylate symporter family DYB08_18770 PF00155 Aminotransferase class I and II DYB08_18775 PF01641 SelR domain DYB08_18780 PF00255 Glutathione peroxidase DYB08_18785 PF12833 Helix-turn-helix domain DYB08_18785 PF12852 Cupin DYB08_18795 PF00155 Aminotransferase class I and II DYB08_18800 PF08335 GlnD PII-uridylyltransferase DYB08_18800 PF01966 HD domain DYB08_18800 PF01909 Nucleotidyltransferase domain DYB08_18805 PF02222 ATP-grasp domain DYB08_18815 PF05437 Branched-chain amino acid transport protein (AzlD) DYB08_18820 PF03591 AzlC protein DYB08_18845 PF06071 Protein of unknown function (DUF933) DYB08_18845 PF01926 50S ribosome-binding GTPase DYB08_18850 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_18855 PF09383 NIL domain DYB08_18855 PF00005 ABC transporter DYB08_18860 PF03180 NLPA lipoprotein DYB08_18865 PF03180 NLPA lipoprotein DYB08_18870 PF00296 Luciferase-like monooxygenase DYB08_18880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_18880 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_18895 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_18900 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_18905 PF00005 ABC transporter DYB08_18915 PF01037 Lrp/AsnC ligand binding domain DYB08_18920 PF01709 Transcriptional regulator DYB08_18930 PF00440 Bacterial regulatory proteins, tetR family DYB08_18955 PF03466 LysR substrate binding domain DYB08_18955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_18965 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DYB08_18975 PF00892 EamA-like transporter family DYB08_19000 PF00577 Outer membrane usher protein DYB08_19000 PF13954 PapC N-terminal domain DYB08_19000 PF13953 PapC C-terminal domain DYB08_19005 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DYB08_19005 PF02753 Pili assembly chaperone PapD, C-terminal domain DYB08_19010 PF16970 Type-1 fimbrial protein, A DYB08_19025 PF04055 Radical SAM superfamily DYB08_19025 PF06968 Biotin and Thiamin Synthesis associated domain DYB08_19030 PF08331 Domain of unknown function (DUF1730) DYB08_19035 PF03853 YjeF-related protein N-terminus DYB08_19035 PF01256 Carbohydrate kinase DYB08_19040 PF02075 Crossover junction endodeoxyribonuclease RuvC DYB08_19055 PF00905 Penicillin binding protein transpeptidase domain DYB08_19075 PF02773 S-adenosylmethionine synthetase, C-terminal domain DYB08_19075 PF02772 S-adenosylmethionine synthetase, central domain DYB08_19075 PF00438 S-adenosylmethionine synthetase, N-terminal domain DYB08_19080 PF02780 Transketolase, C-terminal domain DYB08_19080 PF00456 Transketolase, thiamine diphosphate binding domain DYB08_19080 PF02779 Transketolase, pyrimidine binding domain DYB08_19090 PF04264 YceI-like domain DYB08_19100 PF09992 Phosphodiester glycosidase DYB08_19110 PF05958 tRNA (Uracil-5-)-methyltransferase DYB08_19115 PF04229 GrpB protein DYB08_19120 PF01619 Proline dehydrogenase DYB08_19120 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DYB08_19120 PF14850 DNA-binding domain of Proline dehydrogenase DYB08_19120 PF00171 Aldehyde dehydrogenase family DYB08_19125 PF01037 Lrp/AsnC ligand binding domain DYB08_19130 PF00474 Sodium:solute symporter family DYB08_19135 PF02146 Sir2 family DYB08_19140 PF01597 Glycine cleavage H-protein DYB08_19145 PF12833 Helix-turn-helix domain DYB08_19145 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DYB08_19155 PF00664 ABC transporter transmembrane region DYB08_19155 PF00005 ABC transporter DYB08_19160 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DYB08_19165 PF06912 Protein of unknown function (DUF1275) DYB08_19195 PF08007 Cupin superfamily protein DYB08_19200 PF02545 Maf-like protein DYB08_19210 PF00162 Phosphoglycerate kinase DYB08_19220 PF01116 Fructose-bisphosphate aldolase class-II DYB08_19225 PF09312 SurA N-terminal domain DYB08_19225 PF00639 PPIC-type PPIASE domain DYB08_19230 PF03968 OstA-like protein DYB08_19230 PF04453 LPS transport system D DYB08_19235 PF01636 Phosphotransferase enzyme family DYB08_19240 PF00483 Nucleotidyl transferase DYB08_19245 PF02527 rRNA small subunit methyltransferase G DYB08_19250 PF13614 AAA domain DYB08_19255 PF17762 HTH domain found in ParB protein DYB08_19255 PF02195 ParB-like nuclease domain DYB08_19260 PF01618 MotA/TolQ/ExbB proton channel family DYB08_19270 PF00664 ABC transporter transmembrane region DYB08_19270 PF00005 ABC transporter DYB08_19275 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DYB08_19280 PF02348 Cytidylyltransferase DYB08_19285 PF09115 DNA polymerase III, delta subunit, C terminal DYB08_19295 PF01026 TatD related DNase DYB08_19310 PF02501 Type II secretion system (T2SS), protein I DYB08_19310 PF07963 Prokaryotic N-terminal methylation motif DYB08_19315 PF11612 Type II secretion system (T2SS), protein J DYB08_19315 PF07963 Prokaryotic N-terminal methylation motif DYB08_19320 PF03934 Type II secretion system (T2SS), protein K DYB08_19330 PF03167 Uracil DNA glycosylase superfamily DYB08_19340 PF14437 MafB19-like deaminase DYB08_19350 PF02224 Cytidylate kinase DYB08_19355 PF00575 S1 RNA binding domain DYB08_19360 PF00216 Bacterial DNA-binding protein DYB08_19370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DYB08_19405 PF00877 NlpC/P60 family DYB08_19515 PF09383 NIL domain DYB08_19515 PF00005 ABC transporter DYB08_19520 PF02195 ParB-like nuclease domain DYB08_19665 PF00929 Exonuclease DYB08_19715 PF13610 DDE domain DYB08_19730 PF01636 Phosphotransferase enzyme family DYB08_19740 PF13610 DDE domain DYB08_19800 PF00692 dUTPase DYB08_19825 PF00268 Ribonucleotide reductase, small chain DYB08_19830 PF03477 ATP cone domain DYB08_19830 PF02867 Ribonucleotide reductase, barrel domain DYB08_19830 PF00317 Ribonucleotide reductase, all-alpha domain DYB08_19855 PF13476 AAA domain DYB08_19900 PF00154 recA bacterial DNA recombination protein DYB08_19920 PF02811 PHP domain DYB08_19920 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYB08_19920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYB08_19920 PF14579 Helix-hairpin-helix motif DYB08_19955 PF00589 Phage integrase family DYB08_19955 PF02899 Phage integrase, N-terminal SAM-like domain DYB08_19980 PF00625 Guanylate kinase DYB08_20020 PF01807 CHC2 zinc finger DYB08_20020 PF10410 DnaB-helicase binding domain of primase DYB08_20020 PF08275 DNA primase catalytic core, N-terminal domain DYB08_20060 PF00905 Penicillin binding protein transpeptidase domain DYB08_20075 PF07715 TonB-dependent Receptor Plug Domain DYB08_20075 PF00593 TonB dependent receptor DYB08_20095 PF05973 Phage derived protein Gp49-like (DUF891) DYB08_20100 PF00905 Penicillin binding protein transpeptidase domain