locus-tag	class	description
DYB08_00015	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DYB08_00020	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DYB08_00070	COG0339	signal peptide processing
DYB08_00080	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYB08_00115	COG0702	epimerase
DYB08_00120	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DYB08_00140	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DYB08_00170	COG0316	Belongs to the HesB IscA family
DYB08_00175	COG0822	iron-sulfur transferase activity
DYB08_00200	COG0776	regulation of translation
DYB08_00205	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DYB08_00210	COG2207	Transcriptional regulator
DYB08_00215	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DYB08_00220	COG1960	acyl-CoA dehydrogenase activity
DYB08_00230	COG1960	acyl-CoA dehydrogenase activity
DYB08_00250	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DYB08_00270	COG4264	IucA IucC family
DYB08_00275	COG4264	IucA IucC family
DYB08_00335	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
DYB08_00355	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DYB08_00360	COG0730	response to heat
DYB08_00395	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DYB08_00410	COG1131	(ABC) transporter
DYB08_00415	COG0842	Transport permease protein
DYB08_00420	COG0842	Transport permease protein
DYB08_00475	COG2226	methyltransferase
DYB08_00500	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DYB08_00535	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DYB08_00545	COG0133	tryptophan synthase activity
DYB08_00560	COG3706	GGDEF domain
DYB08_00575	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DYB08_00580	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DYB08_00585	COG0022	dehydrogenase e1 component
DYB08_00590	COG0508	dehydrogenase complex catalyzes the overall conversion of
DYB08_00595	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DYB08_00605	COG1063	alcohol dehydrogenase
DYB08_00610	COG3781	membrane
DYB08_00620	COG3453	Protein conserved in bacteria
DYB08_00620	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYB08_00630	COG0730	response to heat
DYB08_00645	COG3708	Transcriptional regulator
DYB08_00645	COG2207	Transcriptional regulator
DYB08_00650	COG1733	regulation of RNA biosynthetic process
DYB08_00655	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DYB08_00680	COG4521	taurine ABC transporter
DYB08_00685	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYB08_00705	COG0477	Major facilitator Superfamily
DYB08_00715	COG1027	Aspartate ammonia-lyase
DYB08_00730	COG0583	DNA-binding transcription factor activity
DYB08_00735	COG0583	DNA-binding transcription factor activity
DYB08_00740	COG0183	Belongs to the thiolase family
DYB08_00745	COG2031	fatty acid transporter
DYB08_00750	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DYB08_00760	COG0583	DNA-binding transcription factor activity
DYB08_00780	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_00790	COG2207	Transcriptional regulator
DYB08_00800	COG0412	Dienelactone hydrolase
DYB08_00805	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_00815	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DYB08_00830	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DYB08_00830	COG0543	2 iron, 2 sulfur cluster binding
DYB08_00835	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
DYB08_00840	COG4638	Rieske (2fe-2S)
DYB08_00850	COG0725	ABC transporter, periplasmic molybdate-binding protein
DYB08_00855	COG4149	molybdate abc transporter
DYB08_00860	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
DYB08_00865	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_00870	COG3433	isochorismatase activity
DYB08_00870	COG1535	isochorismatase
DYB08_00935	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DYB08_00950	COG0753	catalase activity
DYB08_00960	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
DYB08_00990	COG3539	Fimbrial protein
DYB08_01010	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DYB08_01035	COG2072	flavoprotein involved in K transport
DYB08_01045	COG1538	Outer membrane efflux protein
DYB08_01050	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DYB08_01055	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYB08_01075	COG0745	RESPONSE REGULATOR receiver
DYB08_01080	COG2205	protein histidine kinase activity
DYB08_01090	COG2207	Transcriptional regulator
DYB08_01105	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_01160	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DYB08_01280	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DYB08_01300	COG1120	ATPase activity
DYB08_01315	COG1064	alcohol dehydrogenase
DYB08_01330	COG2207	Transcriptional regulator
DYB08_01335	COG2084	Dehydrogenase
DYB08_01350	COG2186	Transcriptional regulator
DYB08_01360	COG0583	DNA-binding transcription factor activity
DYB08_01365	COG4948	Mandelate Racemase Muconate Lactonizing
DYB08_01370	COG4829	muconolactone delta-isomerase
DYB08_01380	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DYB08_01385	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DYB08_01390	COG0183	Belongs to the thiolase family
DYB08_01395	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DYB08_01405	COG1012	belongs to the aldehyde dehydrogenase family
DYB08_01415	COG3733	amine oxidase
DYB08_01425	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DYB08_01435	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_01445	COG4638	Rieske (2fe-2S)
DYB08_01465	COG0154	amidase activity
DYB08_01475	COG2814	Major facilitator Superfamily
DYB08_01500	COG1960	acyl-CoA dehydrogenase activity
DYB08_01520	COG1414	Transcriptional regulator
DYB08_01535	COG2391	methyltransferase activity
DYB08_01545	COG4993	Dehydrogenase
DYB08_01550	COG3659	wide pore channel activity
DYB08_01555	COG3420	alginic acid biosynthetic process
DYB08_01560	COG0710	3-dehydroquinate dehydratase activity
DYB08_01565	COG3485	protocatechuate 3,4-dioxygenase
DYB08_01570	COG3485	protocatechuate 3,4-dioxygenase
DYB08_01575	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DYB08_01580	COG2271	Major facilitator Superfamily
DYB08_01585	COG0596	Alpha beta hydrolase
DYB08_01590	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DYB08_01595	COG0183	Belongs to the thiolase family
DYB08_01600	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DYB08_01605	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DYB08_01615	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
DYB08_01620	COG2323	membrane
DYB08_01665	COG0446	pyridine nucleotide-disulphide oxidoreductase
DYB08_01665	COG1902	pentaerythritol trinitrate reductase activity
DYB08_01680	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DYB08_01690	COG0542	response to heat
DYB08_01695	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DYB08_01725	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DYB08_01730	COG0569	domain protein
DYB08_01735	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DYB08_01750	COG4774	siderophore transport
DYB08_01755	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DYB08_01765	COG1585	Membrane protein implicated in regulation of membrane protease activity
DYB08_01785	COG1294	oxidase, subunit
DYB08_01790	COG4890	Cyd operon protein YbgT
DYB08_01805	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
DYB08_01815	COG0552	protein localization to endoplasmic reticulum
DYB08_01840	COG0516	GMP reductase activity
DYB08_01840	COG0517	IMP dehydrogenase activity
DYB08_01845	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DYB08_01850	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DYB08_01860	COG0583	DNA-binding transcription factor activity
DYB08_01865	COG0024	Methionine aminopeptidase
DYB08_01895	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DYB08_01895	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYB08_01900	COG1105	Belongs to the carbohydrate kinase PfkB family
DYB08_01905	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
DYB08_01905	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DYB08_01905	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DYB08_01925	COG3300	MHYT domain
DYB08_01925	COG5001	Diguanylate cyclase
DYB08_01940	COG2135	peptidase activity
DYB08_01945	COG0659	secondary active sulfate transmembrane transporter activity
DYB08_01960	COG1113	amino acid transport
DYB08_01970	COG1522	sequence-specific DNA binding
DYB08_01995	COG1011	Hydrolase
DYB08_02000	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DYB08_02010	COG2137	regulation of response to DNA damage stimulus
DYB08_02025	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DYB08_02060	COG0575	Belongs to the CDS family
DYB08_02065	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DYB08_02085	COG3852	Histidine kinase
DYB08_02090	COG2204	response regulator
DYB08_02150	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DYB08_02155	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
DYB08_02175	COG0697	spore germination
DYB08_02180	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DYB08_02190	COG0303	'Molybdopterin
DYB08_02195	COG0521	Mo-molybdopterin cofactor biosynthetic process
DYB08_02195	COG0315	cyclic pyranopterin monophosphate synthase activity
DYB08_02210	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DYB08_02215	COG0243	molybdopterin cofactor binding
DYB08_02225	COG0243	molybdopterin cofactor binding
DYB08_02230	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DYB08_02235	COG2146	nitrite reductase [NAD(P)H] activity
DYB08_02235	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DYB08_02245	COG0745	RESPONSE REGULATOR receiver
DYB08_02250	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DYB08_02250	COG1116	anion transmembrane transporter activity
DYB08_02270	COG0511	ligase activity, forming carbon-carbon bonds
DYB08_02285	COG2814	Major facilitator Superfamily
DYB08_02625	COG0069	glutamate synthase activity
DYB08_02645	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DYB08_02655	COG1454	alcohol dehydrogenase
DYB08_02660	COG0824	Thioesterase
DYB08_02670	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DYB08_02700	COG0183	Belongs to the thiolase family
DYB08_02710	COG0583	DNA-binding transcription factor activity
DYB08_02725	COG1522	sequence-specific DNA binding
DYB08_02730	COG3135	benzoate transporter
DYB08_02740	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
DYB08_02785	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYB08_02840	COG0589	response to stress
DYB08_02845	COG0659	secondary active sulfate transmembrane transporter activity
DYB08_02925	COG0589	response to stress
DYB08_02930	COG0488	(ABC) transporter
DYB08_02950	COG4773	Receptor
DYB08_02980	COG0668	transmembrane transport
DYB08_02990	COG1309	transcriptional regulator
DYB08_03010	COG1605	Chorismate mutase
DYB08_03020	COG4221	oxidoreductase activity
DYB08_03030	COG0308	aminopeptidase N
DYB08_03050	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
DYB08_03060	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DYB08_03065	COG1454	alcohol dehydrogenase
DYB08_03085	COG0531	amino acid
DYB08_03090	COG4303	Ethanolamine ammonia lyase large subunit
DYB08_03095	COG4302	ethanolamine ammonia-lyase activity
DYB08_03100	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DYB08_03100	COG0519	Catalyzes the synthesis of GMP from XMP
DYB08_03115	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DYB08_03130	COG0697	spore germination
DYB08_03135	COG1923	regulation of RNA biosynthetic process
DYB08_03145	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DYB08_03150	COG0802	atpase or kinase
DYB08_03170	COG1187	pseudouridine synthase activity
DYB08_03185	COG0583	DNA-binding transcription factor activity
DYB08_03200	COG2814	Major facilitator Superfamily
DYB08_03205	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYB08_03235	COG0729	surface antigen
DYB08_03260	COG0174	glutamine synthetase
DYB08_03265	COG0745	RESPONSE REGULATOR receiver
DYB08_03270	COG2205	protein histidine kinase activity
DYB08_03280	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
DYB08_03285	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
DYB08_03310	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DYB08_03315	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DYB08_03320	COG1960	acyl-CoA dehydrogenase activity
DYB08_03335	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DYB08_03340	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYB08_03360	COG0583	DNA-binding transcription factor activity
DYB08_03380	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DYB08_03390	COG3658	cytochrome
DYB08_03395	COG1215	transferase activity, transferring glycosyl groups
DYB08_03400	COG1649	PFAM Uncharacterised BCR, COG1649
DYB08_03400	COG0726	polysaccharide deacetylase
DYB08_03425	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DYB08_03430	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DYB08_03440	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DYB08_03465	COG0305	Participates in initiation and elongation during chromosome replication
DYB08_03470	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DYB08_03480	COG1305	Transglutaminase-like
DYB08_03490	COG2308	Evidence 4 Homologs of previously reported genes of
DYB08_03520	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
DYB08_03525	COG0138	bifunctional purine biosynthesis protein purh
DYB08_03530	COG0151	Belongs to the GarS family
DYB08_03535	COG1464	Belongs to the NlpA lipoprotein family
DYB08_03540	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DYB08_03545	COG2011	ABC-type metal ion transport system permease component
DYB08_03550	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYB08_03560	COG1301	dicarboxylic acid transport
DYB08_03590	COG1794	racemase activity, acting on amino acids and derivatives
DYB08_03600	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DYB08_03600	COG3008	intermembrane lipid transfer
DYB08_03605	COG2995	paraquat-inducible protein a
DYB08_03615	COG2985	domain, Protein
DYB08_03645	COG0477	Major facilitator Superfamily
DYB08_03700	COG2186	Transcriptional regulator
DYB08_03710	COG0786	glutamate:sodium symporter activity
DYB08_03715	COG3243	poly(R)-hydroxyalkanoic acid synthase
DYB08_03745	COG3111	PFAM Bacterial OB fold (BOF) protein
DYB08_03840	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DYB08_03845	COG1610	YqeY-like protein
DYB08_03850	COG4783	chaperone-mediated protein folding
DYB08_03875	COG1286	toxin biosynthetic process
DYB08_03905	COG0778	Nitroreductase
DYB08_03915	COG0513	Belongs to the DEAD box helicase family
DYB08_03935	COG2363	Small membrane protein
DYB08_03965	COG1234	tRNA 3'-trailer cleavage
DYB08_03970	COG2195	Cleaves the N-terminal amino acid of tripeptides
DYB08_03980	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DYB08_03990	COG2819	hydrolase of the alpha beta superfamily
DYB08_03995	COG1960	acyl-CoA dehydrogenase activity
DYB08_04000	COG1301	dicarboxylic acid transport
DYB08_04010	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DYB08_04015	COG3139	Protein of unknown function (DUF1315)
DYB08_04020	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DYB08_04025	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DYB08_04035	COG0494	nUDIX hydrolase
DYB08_04045	COG0642	Histidine kinase
DYB08_04050	COG0745	RESPONSE REGULATOR receiver
DYB08_04075	COG1720	tRNA m6t6A37 methyltransferase activity
DYB08_04090	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DYB08_04100	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DYB08_04110	COG4598	ABC transporter
DYB08_04115	COG4160	amino acid transport
DYB08_04120	COG4215	(ABC) transporter
DYB08_04145	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYB08_04155	COG1538	Outer membrane efflux protein
DYB08_04200	COG1131	(ABC) transporter
DYB08_04205	COG0842	Transport permease protein
DYB08_04220	COG0772	Belongs to the SEDS family
DYB08_04225	COG2951	lytic endotransglycosylase activity
DYB08_04250	COG2207	Transcriptional regulator
DYB08_04265	COG0052	Belongs to the universal ribosomal protein uS2 family
DYB08_04270	COG0024	Methionine aminopeptidase
DYB08_04280	COG2223	nitrite transmembrane transporter activity
DYB08_04290	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DYB08_04295	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DYB08_04300	COG1960	acyl-CoA dehydrogenase activity
DYB08_04315	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
DYB08_04320	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DYB08_04325	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DYB08_04345	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYB08_04350	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DYB08_04355	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DYB08_04390	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DYB08_04405	COG3104	oligopeptide transport
DYB08_04415	COG0512	Glutamine amidotransferase of anthranilate synthase
DYB08_04420	COG0308	aminopeptidase N
DYB08_04455	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DYB08_04490	COG3739	integral membrane protein
DYB08_04505	COG1169	isochorismate synthase
DYB08_04515	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
DYB08_04525	COG1132	(ABC) transporter
DYB08_04540	COG3433	isochorismatase activity
DYB08_04540	COG1535	isochorismatase
DYB08_04545	COG1021	2,3-dihydroxybenzoate-AMP ligase
DYB08_04550	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DYB08_04560	COG4774	siderophore transport
DYB08_04565	COG4607	ABC-type enterochelin transport system periplasmic component
DYB08_04570	COG4604	ABC transporter, ATP-binding protein
DYB08_04575	COG4605	iron ion homeostasis
DYB08_04580	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYB08_04585	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DYB08_04600	COG2964	Protein conserved in bacteria
DYB08_04610	COG1741	Belongs to the pirin family
DYB08_04630	COG1309	transcriptional regulator
DYB08_04640	COG4948	Mandelate Racemase Muconate Lactonizing
DYB08_04645	COG2814	Major facilitator Superfamily
DYB08_04680	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DYB08_04680	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
DYB08_04685	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DYB08_04700	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DYB08_04705	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DYB08_04715	COG0583	DNA-binding transcription factor activity
DYB08_04720	COG1113	amino acid transport
DYB08_04740	COG2508	Transcriptional regulator
DYB08_04740	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
DYB08_04780	COG2879	small protein
DYB08_04785	COG1966	Carbon starvation protein
DYB08_04830	COG1067	ATP-dependent peptidase activity
DYB08_04835	COG0583	DNA-binding transcription factor activity
DYB08_04860	COG1686	Belongs to the peptidase S11 family
DYB08_04865	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DYB08_04900	COG0616	signal peptide processing
DYB08_04905	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DYB08_04915	COG0573	inorganic phosphate transmembrane transporter activity
DYB08_04920	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DYB08_04925	COG1113	amino acid transport
DYB08_04930	COG3961	Belongs to the TPP enzyme family
DYB08_04935	COG1522	sequence-specific DNA binding
DYB08_04945	COG0076	glutamate decarboxylase activity
DYB08_04950	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DYB08_04960	COG1309	transcriptional regulator
DYB08_04975	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DYB08_05010	COG0352	thiamine-phosphate diphosphorylase activity
DYB08_05035	COG0612	Peptidase, M16
DYB08_05050	COG0583	DNA-binding transcription factor activity
DYB08_05055	COG0477	Major facilitator Superfamily
DYB08_05080	COG1187	pseudouridine synthase activity
DYB08_05095	COG1686	Belongs to the peptidase S11 family
DYB08_05100	COG1252	NADH dehydrogenase
DYB08_05110	COG0415	Belongs to the DNA photolyase family
DYB08_05125	COG1215	transferase activity, transferring glycosyl groups
DYB08_05155	COG2070	2-Nitropropane dioxygenase
DYB08_05210	COG0556	nucleotide-excision repair
DYB08_05260	COG4221	oxidoreductase activity
DYB08_05270	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DYB08_05275	COG1381	Involved in DNA repair and RecF pathway recombination
DYB08_05285	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DYB08_05300	COG0681	Belongs to the peptidase S26 family
DYB08_05315	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYB08_05335	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DYB08_05340	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DYB08_05345	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DYB08_05355	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DYB08_05360	COG4208	sulfate ABC transporter
DYB08_05365	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DYB08_05370	COG0583	DNA-binding transcription factor activity
DYB08_05375	COG4625	pathogenesis
DYB08_05390	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DYB08_05405	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DYB08_05415	COG1056	cytidyltransferase-related domain
DYB08_05415	COG1051	belongs to the nudix hydrolase family
DYB08_05420	COG1024	Enoyl-CoA hydratase
DYB08_05425	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DYB08_05430	COG2814	Major facilitator Superfamily
DYB08_05435	COG0047	phosphoribosylformylglycinamidine synthase activity
DYB08_05435	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DYB08_05460	COG1473	amidohydrolase
DYB08_05465	COG0824	Thioesterase
DYB08_05485	COG0823	Involved in the tonB-independent uptake of proteins
DYB08_05505	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DYB08_05540	COG0628	permease
DYB08_05550	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DYB08_05555	COG0596	Alpha beta hydrolase
DYB08_05560	COG0616	signal peptide processing
DYB08_05560	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DYB08_05585	COG1136	(ABC) transporter
DYB08_05590	COG4591	ABC-type transport system involved in lipoprotein release permease component
DYB08_05625	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYB08_05645	COG0463	Glycosyl transferase, family 2
DYB08_05675	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DYB08_05680	COG1280	lysine exporter protein (LysE YggA)
DYB08_05690	COG0019	diaminopimelate decarboxylase activity
DYB08_05700	COG1113	amino acid transport
DYB08_05715	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
DYB08_05725	COG3339	Conserved Protein
DYB08_05730	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
DYB08_05735	COG0243	molybdopterin cofactor binding
DYB08_05740	COG1929	Belongs to the glycerate kinase type-1 family
DYB08_05755	COG0778	Nitroreductase
DYB08_05780	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DYB08_05795	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DYB08_05825	COG0741	lytic transglycosylase activity
DYB08_05845	COG0584	glycerophosphoryl diester phosphodiesterase
DYB08_05850	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYB08_05875	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DYB08_05895	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DYB08_05900	COG0477	Major facilitator Superfamily
DYB08_05955	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DYB08_05980	COG0505	Belongs to the CarA family
DYB08_06000	COG0589	response to stress
DYB08_06015	COG2843	Capsule synthesis protein
DYB08_06055	COG2321	neutral zinc metallopeptidase
DYB08_06060	COG2354	Protein conserved in bacteria
DYB08_06080	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DYB08_06105	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DYB08_06110	COG1053	succinate dehydrogenase
DYB08_06115	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DYB08_06120	COG2009	succinate dehydrogenase
DYB08_06160	COG2921	Belongs to the UPF0250 family
DYB08_06165	COG0321	lipoyl(octanoyl) transferase activity
DYB08_06180	COG0531	amino acid
DYB08_06190	COG1733	regulation of RNA biosynthetic process
DYB08_06195	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DYB08_06200	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DYB08_06200	COG1648	precorrin-2 dehydrogenase activity
DYB08_06215	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
DYB08_06245	COG0671	phosphoesterase, PA-phosphatase related
DYB08_06250	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYB08_06260	COG1538	Outer membrane efflux protein
DYB08_06265	COG0393	Putative heavy-metal-binding
DYB08_06270	COG0393	Putative heavy-metal-binding
DYB08_06280	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_06290	COG0525	valine-tRNA ligase activity
DYB08_06310	COG0583	DNA-binding transcription factor activity
DYB08_06320	COG0004	ammonium transporteR
DYB08_06330	COG0642	Histidine kinase
DYB08_06335	COG0745	RESPONSE REGULATOR receiver
DYB08_06340	COG2194	sulfuric ester hydrolase activity
DYB08_06360	COG1752	Esterase of the alpha-beta hydrolase superfamily
DYB08_06375	COG2315	Protein conserved in bacteria
DYB08_06380	COG0142	geranyltranstransferase activity
DYB08_06385	COG2828	Protein conserved in bacteria
DYB08_06390	COG1113	amino acid transport
DYB08_06410	COG2207	Transcriptional regulator
DYB08_06435	COG2249	NAD(P)H dehydrogenase (quinone) activity
DYB08_06455	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DYB08_06465	COG1530	ribonuclease E activity
DYB08_06470	COG0424	maF-like protein
DYB08_06475	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
DYB08_06480	COG1792	Involved in formation and maintenance of cell shape
DYB08_06485	COG1077	Cell shape determining protein MreB Mrl
DYB08_06490	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DYB08_06500	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DYB08_06530	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
DYB08_06535	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DYB08_06540	COG1752	Esterase of the alpha-beta hydrolase superfamily
DYB08_06545	COG1115	amino acid carrier protein
DYB08_06565	COG2814	Major facilitator Superfamily
DYB08_06570	COG1289	transmembrane transporter activity
DYB08_06620	COG1376	ErfK ybiS ycfS ynhG family protein
DYB08_06625	COG2832	Protein of unknown function (DUF454)
DYB08_06635	COG5510	response to toxic substance
DYB08_06655	COG0840	transmembrane signaling receptor activity
DYB08_06705	COG3422	double-strand break repair
DYB08_06710	COG2824	Alkylphosphonate utilization operon protein PhnA
DYB08_06715	COG3189	MarR family transcriptional regulator
DYB08_06725	COG0354	folic acid binding
DYB08_06730	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DYB08_06740	COG0679	Auxin Efflux Carrier
DYB08_06745	COG1902	pentaerythritol trinitrate reductase activity
DYB08_06750	COG4772	TonB-dependent receptor
DYB08_06755	COG2094	Belongs to the DNA glycosylase MPG family
DYB08_06785	COG2233	PERMEase
DYB08_06795	COG0833	amino acid
DYB08_06800	COG1690	Belongs to the RtcB family
DYB08_06810	COG2885	chlorophyll binding
DYB08_06810	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DYB08_06820	COG0183	Belongs to the thiolase family
DYB08_06840	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DYB08_06860	COG2207	Transcriptional regulator
DYB08_06865	COG0183	Belongs to the thiolase family
DYB08_06895	COG1272	protein, Hemolysin III
DYB08_06900	COG0477	Major facilitator Superfamily
DYB08_06925	COG0450	alkyl hydroperoxide reductase
DYB08_06945	COG0285	dihydrofolate synthase activity
DYB08_06980	COG0133	tryptophan synthase activity
DYB08_06995	COG2096	Adenosyltransferase
DYB08_07015	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
DYB08_07020	COG0745	RESPONSE REGULATOR receiver
DYB08_07025	COG2205	protein histidine kinase activity
DYB08_07035	COG1960	acyl-CoA dehydrogenase activity
DYB08_07040	COG1960	acyl-CoA dehydrogenase activity
DYB08_07050	COG0583	DNA-binding transcription factor activity
DYB08_07055	COG0625	glutathione transferase activity
DYB08_07120	COG0438	transferase activity, transferring glycosyl groups
DYB08_07125	COG0463	Glycosyl transferase, family 2
DYB08_07130	COG0726	polysaccharide deacetylase
DYB08_07150	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
DYB08_07155	COG2205	protein histidine kinase activity
DYB08_07215	COG1862	Preprotein translocase
DYB08_07225	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DYB08_07230	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DYB08_07240	COG3781	membrane
DYB08_07245	COG0613	PHP domain protein
DYB08_07255	COG2350	Protein conserved in bacteria
DYB08_07285	COG1607	acyl-coa hydrolase
DYB08_07300	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYB08_07300	COG3453	Protein conserved in bacteria
DYB08_07345	COG2199	diguanylate cyclase activity
DYB08_07355	COG1408	metallophosphoesterase
DYB08_07360	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DYB08_07370	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DYB08_07390	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DYB08_07395	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DYB08_07410	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DYB08_07420	COG2969	positive regulation of protein catabolic process
DYB08_07455	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DYB08_07470	COG1309	transcriptional regulator
DYB08_07475	COG1960	acyl-CoA dehydrogenase activity
DYB08_07520	COG1183	phosphatidylcholine synthase activity
DYB08_07525	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DYB08_07555	COG1196	nuclear chromosome segregation
DYB08_07555	COG0741	lytic transglycosylase activity
DYB08_07555	COG0739	heme binding
DYB08_07565	COG1702	phosphate starvation-inducible protein PhoH
DYB08_07600	COG1295	ribonuclease BN
DYB08_07605	COG0697	spore germination
DYB08_07610	COG2169	Transcriptional regulator
DYB08_07615	COG0179	Fumarylacetoacetate (FAA) hydrolase
DYB08_07660	COG0557	exoribonuclease II activity
DYB08_07665	COG0339	signal peptide processing
DYB08_07670	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
DYB08_07700	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DYB08_07705	COG1960	acyl-CoA dehydrogenase activity
DYB08_07730	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DYB08_07740	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DYB08_07860	COG0626	cystathionine gamma-synthase activity
DYB08_07865	COG0433	COG0433 Predicted ATPase
DYB08_07870	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DYB08_07870	COG1017	nitric oxide dioxygenase activity
DYB08_07875	COG1959	2 iron, 2 sulfur cluster binding
DYB08_07890	COG1301	dicarboxylic acid transport
DYB08_07895	COG1946	Acyl-CoA thioesterase
DYB08_07915	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DYB08_07920	COG1040	competence protein
DYB08_07925	COG0494	nUDIX hydrolase
DYB08_07935	COG0598	Magnesium transport protein CorA
DYB08_07945	COG2854	intermembrane phospholipid transfer
DYB08_07955	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DYB08_07960	COG1127	ABC transporter
DYB08_07965	COG0513	Belongs to the DEAD box helicase family
DYB08_07985	COG0408	coproporphyrinogen oxidase activity
DYB08_08000	COG1960	acyl-CoA dehydrogenase activity
DYB08_08010	COG1983	PspC domain protein
DYB08_08015	COG0517	IMP dehydrogenase activity
DYB08_08060	COG0583	DNA-binding transcription factor activity
DYB08_08100	COG1012	belongs to the aldehyde dehydrogenase family
DYB08_08110	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DYB08_08115	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DYB08_08120	COG0833	amino acid
DYB08_08150	COG1192	Involved in chromosome partitioning
DYB08_08155	COG0628	permease
DYB08_08165	COG1289	transmembrane transporter activity
DYB08_08200	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
DYB08_08210	COG0277	FAD linked oxidase domain protein
DYB08_08215	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DYB08_08240	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DYB08_08245	COG5380	lipid catabolic process
DYB08_08270	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DYB08_08320	COG0194	GDP metabolic process
DYB08_08335	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DYB08_08355	COG3307	-O-antigen
DYB08_08375	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
DYB08_08380	COG1704	LemA family
DYB08_08390	COG0493	'glutamate synthase
DYB08_08395	COG0070	glutamate synthase
DYB08_08395	COG0067	glutamate synthase
DYB08_08395	COG0069	glutamate synthase activity
DYB08_08445	COG2226	methyltransferase
DYB08_08460	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DYB08_08465	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DYB08_08510	COG0833	amino acid
DYB08_08595	COG0488	(ABC) transporter
DYB08_08605	COG4221	oxidoreductase activity
DYB08_08610	COG0659	secondary active sulfate transmembrane transporter activity
DYB08_08620	COG0745	RESPONSE REGULATOR receiver
DYB08_08635	COG0427	acetyl-CoA hydrolase
DYB08_08665	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DYB08_08695	COG2329	Antibiotic biosynthesis monooxygenase
DYB08_08710	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DYB08_08775	COG2249	NAD(P)H dehydrogenase (quinone) activity
DYB08_08785	COG1733	regulation of RNA biosynthetic process
DYB08_08820	COG0667	Aldo Keto reductase
DYB08_08840	COG0583	DNA-binding transcription factor activity
DYB08_08845	COG2814	Major facilitator Superfamily
DYB08_08875	COG1335	isochorismatase
DYB08_08885	COG1012	belongs to the aldehyde dehydrogenase family
DYB08_08890	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DYB08_08900	COG1113	amino acid transport
DYB08_08935	COG2814	Major facilitator Superfamily
DYB08_08945	COG0352	thiamine-phosphate diphosphorylase activity
DYB08_08945	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DYB08_08945	COG0351	phosphomethylpyrimidine kinase
DYB08_08965	COG1309	transcriptional regulator
DYB08_08970	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DYB08_08980	COG3706	GGDEF domain
DYB08_08990	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DYB08_09000	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DYB08_09005	COG3162	membrane
DYB08_09010	COG2198	Histidine kinase
DYB08_09010	COG0784	Response regulator, receiver
DYB08_09010	COG2205	protein histidine kinase activity
DYB08_09035	COG3328	transposase activity
DYB08_09040	COG1522	sequence-specific DNA binding
DYB08_09045	COG1335	isochorismatase
DYB08_09050	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DYB08_09060	COG0668	transmembrane transport
DYB08_09065	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DYB08_09070	COG1519	Transferase
DYB08_09075	COG1902	pentaerythritol trinitrate reductase activity
DYB08_09095	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DYB08_09120	COG0426	domain, Protein
DYB08_09120	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DYB08_09125	COG4774	siderophore transport
DYB08_09130	COG2119	membrane
DYB08_09140	COG0508	dehydrogenase complex catalyzes the overall conversion of
DYB08_09150	COG4942	peptidase
DYB08_09165	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DYB08_09175	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DYB08_09195	COG0189	ligase activity
DYB08_09215	COG0708	Exodeoxyribonuclease III
DYB08_09220	COG1393	Belongs to the ArsC family
DYB08_09235	COG3706	GGDEF domain
DYB08_09270	COG2351	hydroxyisourate hydrolase activity
DYB08_09275	COG2233	PERMEase
DYB08_09285	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYB08_09295	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
DYB08_09300	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_09310	COG3150	esterase
DYB08_09325	COG0791	NLP P60 protein
DYB08_09325	COG1388	LysM domain
DYB08_09330	COG3501	Rhs element vgr protein
DYB08_09340	COG2918	glutathione biosynthetic process
DYB08_09355	COG2733	membrane
DYB08_09360	COG0436	Aminotransferase
DYB08_09365	COG0534	Mate efflux family protein
DYB08_09480	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DYB08_09485	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DYB08_09495	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DYB08_09500	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DYB08_09505	COG0546	phosphoglycolate phosphatase activity
DYB08_09515	COG0010	Belongs to the arginase family
DYB08_09545	COG2188	Transcriptional regulator
DYB08_09555	COG0523	cobalamin synthesis protein
DYB08_09565	COG1113	amino acid transport
DYB08_09575	COG0625	glutathione transferase activity
DYB08_09595	COG1683	Conserved Protein
DYB08_09600	COG0534	Mate efflux family protein
DYB08_09605	COG0385	Bile acid
DYB08_09610	COG1335	isochorismatase
DYB08_09615	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DYB08_09635	COG2116	formate transmembrane transporter activity
DYB08_09640	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DYB08_09645	COG2133	pyrroloquinoline quinone binding
DYB08_09650	COG2983	Belongs to the UPF0260 family
DYB08_09660	COG0400	carboxylic ester hydrolase activity
DYB08_09670	COG1194	a g-specific adenine glycosylase
DYB08_09685	COG2818	Glycosylase
DYB08_09690	COG1064	alcohol dehydrogenase
DYB08_09695	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DYB08_09710	COG0583	DNA-binding transcription factor activity
DYB08_09715	COG0656	L-ascorbic acid biosynthetic process
DYB08_09720	COG2814	Major facilitator Superfamily
DYB08_09755	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYB08_09770	COG2233	PERMEase
DYB08_09775	COG0583	DNA-binding transcription factor activity
DYB08_09800	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DYB08_09810	COG0733	neurotransmitter:sodium symporter activity
DYB08_09850	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DYB08_09855	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
DYB08_09860	COG0596	Alpha beta hydrolase
DYB08_09885	COG0488	(ABC) transporter
DYB08_09890	COG0586	Pfam SNARE associated Golgi protein
DYB08_09900	COG0187	DNA topoisomerase II activity
DYB08_09910	COG0592	DNA-directed DNA polymerase activity
DYB08_09920	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DYB08_09935	COG0706	membrane insertase activity
DYB08_09950	COG1230	cation diffusion facilitator family transporter
DYB08_09955	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DYB08_09970	COG0402	S-adenosylhomocysteine deaminase activity
DYB08_09980	COG0754	glutathionylspermidine amidase activity
DYB08_09990	COG0861	Integral membrane protein TerC family
DYB08_09995	COG0671	phosphoesterase, PA-phosphatase related
DYB08_10005	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DYB08_10025	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DYB08_10030	COG2951	lytic endotransglycosylase activity
DYB08_10095	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DYB08_10135	COG1047	Peptidyl-prolyl cis-trans
DYB08_10145	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DYB08_10150	COG0196	riboflavin kinase activity
DYB08_10160	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DYB08_10165	COG1309	transcriptional regulator
DYB08_10170	COG1116	anion transmembrane transporter activity
DYB08_10175	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYB08_10180	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DYB08_10185	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DYB08_10190	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DYB08_10210	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_10215	COG0546	phosphoglycolate phosphatase activity
DYB08_10275	COG3023	N-Acetylmuramoyl-L-alanine amidase
DYB08_10280	COG0728	peptidoglycan biosynthetic process
DYB08_10305	COG1596	polysaccharide export
DYB08_10310	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DYB08_10350	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DYB08_10365	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DYB08_10370	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DYB08_10375	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DYB08_10395	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DYB08_10400	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYB08_10410	COG2186	Transcriptional regulator
DYB08_10420	COG0277	FAD linked oxidase domain protein
DYB08_10425	COG1448	Aminotransferase
DYB08_10435	COG1802	Transcriptional regulator
DYB08_10450	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DYB08_10470	COG1051	belongs to the nudix hydrolase family
DYB08_10510	COG0564	pseudouridine synthase activity
DYB08_10535	COG1522	sequence-specific DNA binding
DYB08_10550	COG0251	oxidation-reduction process
DYB08_10555	COG1113	amino acid transport
DYB08_10560	COG1113	amino acid transport
DYB08_10580	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DYB08_10585	COG1960	acyl-CoA dehydrogenase activity
DYB08_10590	COG1024	Enoyl-CoA hydratase
DYB08_10595	COG1024	Enoyl-CoA hydratase
DYB08_10600	COG0477	Major facilitator Superfamily
DYB08_10605	COG3916	Acyl-homoserine-lactone synthase
DYB08_10615	COG2197	response regulator
DYB08_10625	COG1960	acyl-CoA dehydrogenase activity
DYB08_10630	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DYB08_10630	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
DYB08_10630	COG3321	synthase
DYB08_10630	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DYB08_10640	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DYB08_10655	COG2267	carboxylic ester hydrolase activity
DYB08_10675	COG0271	Belongs to the BolA IbaG family
DYB08_10685	COG1192	Involved in chromosome partitioning
DYB08_10700	COG0586	Pfam SNARE associated Golgi protein
DYB08_10705	COG2259	Doxx family
DYB08_10710	COG4399	Belongs to the UPF0754 family
DYB08_10715	COG0519	Catalyzes the synthesis of GMP from XMP
DYB08_10715	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DYB08_10760	COG0281	malic enzyme
DYB08_10790	COG1280	lysine exporter protein (LysE YggA)
DYB08_10795	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DYB08_10800	COG1121	(ABC) transporter
DYB08_10865	COG0386	Belongs to the glutathione peroxidase family
DYB08_10880	COG1309	transcriptional regulator
DYB08_10885	COG0697	spore germination
DYB08_10895	COG0758	DNA mediated transformation
DYB08_10930	COG1309	transcriptional regulator
DYB08_10965	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DYB08_10975	COG0655	NAD(P)H dehydrogenase (quinone) activity
DYB08_11010	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DYB08_11030	COG1253	flavin adenine dinucleotide binding
DYB08_11040	COG2860	membrane
DYB08_11045	COG0477	Major facilitator Superfamily
DYB08_11055	COG0318	PFAM AMP-dependent synthetase and ligase
DYB08_11070	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DYB08_11085	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DYB08_11095	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DYB08_11100	COG0606	chelatase, subunit chli
DYB08_11140	COG0589	response to stress
DYB08_11145	COG0659	secondary active sulfate transmembrane transporter activity
DYB08_11175	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DYB08_11230	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYB08_11275	COG0589	response to stress
DYB08_11280	COG0659	secondary active sulfate transmembrane transporter activity
DYB08_11340	COG0606	chelatase, subunit chli
DYB08_11350	COG0347	Belongs to the P(II) protein family
DYB08_11355	COG0004	ammonium transporteR
DYB08_11365	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DYB08_11365	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DYB08_11405	COG0795	lipopolysaccharide-transporting ATPase activity
DYB08_11410	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DYB08_11415	COG0793	Belongs to the peptidase S41A family
DYB08_11430	COG2197	response regulator
DYB08_11440	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DYB08_11450	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DYB08_11455	COG4974	Belongs to the 'phage' integrase family
DYB08_11480	COG0772	Belongs to the SEDS family
DYB08_11485	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DYB08_11490	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DYB08_11495	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DYB08_11520	COG0697	spore germination
DYB08_11525	COG1538	Outer membrane efflux protein
DYB08_11545	COG3275	phosphorelay sensor kinase activity
DYB08_11555	COG0181	hydroxymethylbilane synthase activity
DYB08_11600	COG1716	ATPase activity
DYB08_11605	COG0546	phosphoglycolate phosphatase activity
DYB08_11710	COG0596	Alpha beta hydrolase
DYB08_11715	COG2056	Na+-H+ antiporter family
DYB08_11730	COG0326	Molecular chaperone. Has ATPase activity
DYB08_11745	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
DYB08_11815	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DYB08_11820	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DYB08_11820	COG2169	Transcriptional regulator
DYB08_11850	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DYB08_11860	COG0497	DNA recombination
DYB08_11875	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DYB08_11885	COG0237	dephospho-CoA kinase activity
DYB08_11935	COG0195	Participates in both transcription termination and antitermination
DYB08_11955	COG2212	antiporter activity
DYB08_11965	COG0651	ATP synthesis coupled electron transport
DYB08_11970	COG1006	Multisubunit Na H antiporter MnhC subunit
DYB08_11975	COG2111	Na H antiporter
DYB08_11975	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DYB08_11990	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DYB08_11995	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYB08_12010	COG2226	methyltransferase
DYB08_12030	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
DYB08_12035	COG1074	ATP-dependent DNA helicase activity
DYB08_12040	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DYB08_12060	COG0598	Magnesium transport protein CorA
DYB08_12065	COG0789	Transcriptional regulator
DYB08_12070	COG0484	heat shock protein binding
DYB08_12080	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DYB08_12085	COG0475	glutathione-regulated potassium exporter activity
DYB08_12085	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DYB08_12090	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DYB08_12115	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYB08_12125	COG4535	Mg2 and Co2 transporter CorC
DYB08_12130	COG0425	Belongs to the sulfur carrier protein TusA family
DYB08_12135	COG0644	oxidoreductase
DYB08_12135	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
DYB08_12145	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DYB08_12160	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYB08_12165	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
DYB08_12205	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DYB08_12220	COG0534	Mate efflux family protein
DYB08_12230	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DYB08_12235	COG4221	oxidoreductase activity
DYB08_12240	COG0583	DNA-binding transcription factor activity
DYB08_12260	COG1530	ribonuclease E activity
DYB08_12275	COG0546	phosphoglycolate phosphatase activity
DYB08_12280	COG2378	regulation of single-species biofilm formation
DYB08_12285	COG0625	glutathione transferase activity
DYB08_12295	COG0583	DNA-binding transcription factor activity
DYB08_12360	COG0473	3-isopropylmalate dehydrogenase activity
DYB08_12415	COG1301	dicarboxylic acid transport
DYB08_12425	COG1560	Kdo2-lipid A biosynthetic process
DYB08_12430	COG1280	lysine exporter protein (LysE YggA)
DYB08_12450	COG1733	regulation of RNA biosynthetic process
DYB08_12475	COG0210	DNA helicase
DYB08_12480	COG0724	RNA recognition motif
DYB08_12500	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DYB08_12500	COG4651	solute:proton antiporter activity
DYB08_12505	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DYB08_12510	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DYB08_12525	COG0788	formyltetrahydrofolate deformylase activity
DYB08_12625	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DYB08_12625	COG2813	Specifically methylates the guanine in position
DYB08_12635	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DYB08_12645	COG4774	siderophore transport
DYB08_12655	COG0740	serine-type endopeptidase activity
DYB08_12675	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DYB08_12675	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DYB08_12680	COG0280	phosphate acetyltransferase
DYB08_12680	COG0857	belongs to the CobB CobQ family
DYB08_12685	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DYB08_12700	COG0800	Aldolase
DYB08_12710	COG3265	gluconokinase activity
DYB08_12715	COG1012	belongs to the aldehyde dehydrogenase family
DYB08_12725	COG2267	carboxylic ester hydrolase activity
DYB08_12740	COG0793	Belongs to the peptidase S41A family
DYB08_12775	COG1426	Protein conserved in bacteria
DYB08_12815	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DYB08_12820	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DYB08_12830	COG0318	PFAM AMP-dependent synthetase and ligase
DYB08_12845	COG2986	histidine ammonia-lyase
DYB08_12895	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_12900	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DYB08_12920	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DYB08_12930	COG1162	GTPase activity
DYB08_12935	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
DYB08_12950	COG1538	Outer membrane efflux protein
DYB08_12955	COG0577	efflux transmembrane transporter activity
DYB08_12955	COG1136	(ABC) transporter
DYB08_12995	COG0028	Belongs to the TPP enzyme family
DYB08_13000	COG0440	acetolactate synthase activity
DYB08_13040	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DYB08_13055	COG0084	hydrolase, TatD family'
DYB08_13070	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DYB08_13080	COG0583	DNA-binding transcription factor activity
DYB08_13090	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DYB08_13095	COG2814	Major facilitator Superfamily
DYB08_13105	COG0697	spore germination
DYB08_13110	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DYB08_13115	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DYB08_13120	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
DYB08_13135	COG3622	Belongs to the hyi family
DYB08_13140	COG2084	Dehydrogenase
DYB08_13145	COG1024	Enoyl-CoA hydratase
DYB08_13150	COG0784	Response regulator, receiver
DYB08_13150	COG5002	protein histidine kinase activity
DYB08_13150	COG2205	protein histidine kinase activity
DYB08_13170	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DYB08_13180	COG3956	TIGRFAM MazG family protein
DYB08_13185	COG1555	photosystem II stabilization
DYB08_13190	COG0617	tRNA 3'-terminal CCA addition
DYB08_13195	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DYB08_13215	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYB08_13220	COG3028	Belongs to the UPF0307 family
DYB08_13225	COG0318	PFAM AMP-dependent synthetase and ligase
DYB08_13245	COG0625	glutathione transferase activity
DYB08_13250	COG1238	metal cluster binding
DYB08_13265	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DYB08_13290	COG0072	phenylalanine-tRNA ligase activity
DYB08_13320	COG0248	Ppx GppA phosphatase
DYB08_13330	COG0037	tRNA processing
DYB08_13370	COG1764	response to oxidative stress
DYB08_13375	COG1846	Transcriptional regulator
DYB08_13385	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DYB08_13445	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DYB08_13450	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DYB08_13455	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DYB08_13465	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DYB08_13515	COG1214	PFAM Peptidase M22, glycoprotease
DYB08_13540	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DYB08_13545	COG0561	phosphatase activity
DYB08_13555	COG2132	Multicopper oxidase
DYB08_13560	COG3667	copper resistance
DYB08_13575	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DYB08_13580	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DYB08_13585	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
DYB08_13615	COG1063	alcohol dehydrogenase
DYB08_13620	COG0583	DNA-binding transcription factor activity
DYB08_13625	COG1960	acyl-CoA dehydrogenase activity
DYB08_13635	COG2814	Major facilitator Superfamily
DYB08_13640	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DYB08_13650	COG1053	succinate dehydrogenase
DYB08_13655	COG0583	DNA-binding transcription factor activity
DYB08_13680	COG0583	DNA-binding transcription factor activity
DYB08_13690	COG1473	amidohydrolase
DYB08_13710	COG0583	DNA-binding transcription factor activity
DYB08_13720	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DYB08_13725	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DYB08_13755	COG0384	phenazine biosynthesis protein PhzF
DYB08_13775	COG4993	Dehydrogenase
DYB08_13860	COG2205	protein histidine kinase activity
DYB08_13870	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYB08_13890	COG0745	RESPONSE REGULATOR receiver
DYB08_13895	COG2205	protein histidine kinase activity
DYB08_13930	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
DYB08_13960	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DYB08_13965	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DYB08_13985	COG0583	DNA-binding transcription factor activity
DYB08_14005	COG0668	transmembrane transport
DYB08_14015	COG2081	HI0933 family
DYB08_14020	COG2515	1-aminocyclopropane-1-carboxylate deaminase
DYB08_14050	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYB08_14050	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYB08_14060	COG0489	protein tyrosine kinase activity
DYB08_14120	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DYB08_14130	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DYB08_14145	COG0730	response to heat
DYB08_14155	COG1196	nuclear chromosome segregation
DYB08_14175	COG2223	nitrite transmembrane transporter activity
DYB08_14180	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
DYB08_14185	COG1877	trehalose-phosphatase activity
DYB08_14190	COG2226	methyltransferase
DYB08_14190	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DYB08_14190	COG0596	Alpha beta hydrolase
DYB08_14205	COG4106	trans-aconitate 2-methyltransferase activity
DYB08_14220	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DYB08_14225	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DYB08_14230	COG0009	L-threonylcarbamoyladenylate synthase
DYB08_14235	COG3101	peptidyl-lysine hydroxylation
DYB08_14240	COG1399	metal-binding, possibly nucleic acid-binding protein
DYB08_14265	COG1652	LysM domain
DYB08_14270	COG0352	thiamine-phosphate diphosphorylase activity
DYB08_14270	COG0351	phosphomethylpyrimidine kinase
DYB08_14270	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DYB08_14280	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DYB08_14310	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DYB08_14340	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
DYB08_14355	COG0358	DNA primase activity
DYB08_14365	COG0564	pseudouridine synthase activity
DYB08_14390	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DYB08_14410	COG0583	DNA-binding transcription factor activity
DYB08_14415	COG0473	3-isopropylmalate dehydrogenase activity
DYB08_14445	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DYB08_14445	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DYB08_14505	COG0456	acetyltransferase
DYB08_14515	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DYB08_14520	COG0492	ferredoxin-NADP+ reductase activity
DYB08_14525	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DYB08_14525	COG1674	ftsk spoiiie
DYB08_14530	COG1280	lysine exporter protein (LysE YggA)
DYB08_14555	COG2894	cell division
DYB08_14570	COG0204	Acyl-transferase
DYB08_14575	COG2885	chlorophyll binding
DYB08_14580	COG0210	DNA helicase
DYB08_14590	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYB08_14605	COG0121	glutamine amidotransferase
DYB08_14630	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYB08_14635	COG0735	belongs to the Fur family
DYB08_14660	COG0420	3'-5' exonuclease activity
DYB08_14680	COG1090	epimerase
DYB08_14695	COG2050	protein possibly involved in aromatic compounds catabolism
DYB08_14705	COG2814	Major facilitator Superfamily
DYB08_14710	COG0405	Gamma-glutamyltransferase
DYB08_14775	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DYB08_14865	COG1484	DNA-dependent DNA replication
DYB08_15060	COG2026	Addiction module toxin, RelE StbE family
DYB08_15100	COG0592	DNA-directed DNA polymerase activity
DYB08_15240	COG0477	Major facilitator Superfamily
DYB08_15245	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DYB08_15255	COG1595	DNA-templated transcription, initiation
DYB08_15310	COG0531	amino acid
DYB08_15315	COG2040	homocysteine
DYB08_15340	COG1309	transcriptional regulator
DYB08_15345	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DYB08_15350	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DYB08_15360	COG1607	acyl-coa hydrolase
DYB08_15370	COG0523	cobalamin synthesis protein
DYB08_15380	COG4681	YaeQ
DYB08_15390	COG0726	polysaccharide deacetylase
DYB08_15390	COG1649	PFAM Uncharacterised BCR, COG1649
DYB08_15395	COG1215	transferase activity, transferring glycosyl groups
DYB08_15405	COG1024	Enoyl-CoA hydratase
DYB08_15420	COG1414	Transcriptional regulator
DYB08_15440	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_15450	COG0446	pyridine nucleotide-disulphide oxidoreductase
DYB08_15455	COG2271	Major facilitator Superfamily
DYB08_15465	COG2267	carboxylic ester hydrolase activity
DYB08_15470	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_15485	COG0028	Belongs to the TPP enzyme family
DYB08_15495	COG0477	Major facilitator Superfamily
DYB08_15500	COG0242	peptide deformylase activity
DYB08_15505	COG2066	Belongs to the glutaminase family
DYB08_15510	COG2207	Transcriptional regulator
DYB08_15515	COG2223	nitrite transmembrane transporter activity
DYB08_15535	COG0583	DNA-binding transcription factor activity
DYB08_15540	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_15545	COG2271	Major facilitator Superfamily
DYB08_15550	COG3959	Transketolase, thiamine diphosphate binding domain
DYB08_15555	COG3958	Transketolase
DYB08_15565	COG0306	phosphate transporter
DYB08_15585	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DYB08_15630	COG4181	ATPase activity
DYB08_15635	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
DYB08_15660	COG0583	DNA-binding transcription factor activity
DYB08_15670	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DYB08_15675	COG1773	rubredoxin
DYB08_15725	COG2851	Citrate transporter
DYB08_15735	COG1253	flavin adenine dinucleotide binding
DYB08_15775	COG0804	urea catabolic process
DYB08_15785	COG0830	nickel cation binding
DYB08_15800	COG0742	ribosomal rna small subunit methyltransferase
DYB08_15805	COG0768	penicillin binding
DYB08_15830	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DYB08_15835	COG2878	Part of a membrane complex involved in electron transport
DYB08_15840	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DYB08_15850	COG3384	dioxygenase
DYB08_15880	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DYB08_16205	COG0739	heme binding
DYB08_16260	COG2194	sulfuric ester hydrolase activity
DYB08_16295	COG0006	proline dipeptidase activity
DYB08_16300	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYB08_16305	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYB08_16325	COG1279	arginine transmembrane transporter activity
DYB08_16330	COG0583	DNA-binding transcription factor activity
DYB08_16370	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DYB08_16375	COG0741	lytic transglycosylase activity
DYB08_16375	COG1388	LysM domain
DYB08_16375	COG1388	LysM domain
DYB08_16375	COG0741	lytic transglycosylase activity
DYB08_16385	COG4174	ABC transporter (Permease)
DYB08_16390	COG4239	(ABC) transporter, permease
DYB08_16395	COG4172	Belongs to the ABC transporter superfamily
DYB08_16415	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DYB08_16425	COG5001	Diguanylate cyclase
DYB08_16425	COG4251	negative regulation of phosphorylation
DYB08_16425	COG3706	GGDEF domain
DYB08_16425	COG2203	Gaf domain
DYB08_16435	COG1902	pentaerythritol trinitrate reductase activity
DYB08_16435	COG0446	pyridine nucleotide-disulphide oxidoreductase
DYB08_16450	COG3316	Transposase and inactivated derivatives
DYB08_16475	COG3316	Transposase and inactivated derivatives
DYB08_16495	COG3316	Transposase and inactivated derivatives
DYB08_16520	COG3316	Transposase and inactivated derivatives
DYB08_16530	COG0300	oxidoreductase activity
DYB08_16540	COG1309	transcriptional regulator
DYB08_16545	COG1741	Belongs to the pirin family
DYB08_16560	COG2072	flavoprotein involved in K transport
DYB08_16570	COG2252	PERMEase
DYB08_16575	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DYB08_16580	COG3038	cytochrome b561
DYB08_16590	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DYB08_16610	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DYB08_16620	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DYB08_16635	COG0667	Aldo Keto reductase
DYB08_16650	COG1765	OsmC-like protein
DYB08_16700	COG2885	chlorophyll binding
DYB08_16710	COG0625	glutathione transferase activity
DYB08_16715	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DYB08_16735	COG3634	alkyl hydroperoxide reductase activity
DYB08_16745	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DYB08_16755	COG0450	alkyl hydroperoxide reductase
DYB08_16760	COG1643	Atp-dependent helicase
DYB08_16775	COG2814	Major facilitator Superfamily
DYB08_16780	COG3135	benzoate transporter
DYB08_16785	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_16790	COG0543	2 iron, 2 sulfur cluster binding
DYB08_16790	COG0633	Ferredoxin
DYB08_16795	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
DYB08_16800	COG4638	Rieske (2fe-2S)
DYB08_16805	COG0583	DNA-binding transcription factor activity
DYB08_16860	COG1570	exodeoxyribonuclease VII activity
DYB08_16895	COG1280	lysine exporter protein (LysE YggA)
DYB08_16900	COG1278	Cold shock
DYB08_16950	COG2814	Major facilitator Superfamily
DYB08_16955	COG1733	regulation of RNA biosynthetic process
DYB08_17170	COG5410	chromosome segregation
DYB08_17345	COG0517	IMP dehydrogenase activity
DYB08_17345	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DYB08_17350	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DYB08_17360	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DYB08_17365	COG1137	ATPase activity
DYB08_17370	COG1538	Outer membrane efflux protein
DYB08_17410	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DYB08_17425	COG1522	sequence-specific DNA binding
DYB08_17430	COG5006	permease, DMT superfamily
DYB08_17440	COG1560	Kdo2-lipid A biosynthetic process
DYB08_17455	COG2814	Major facilitator Superfamily
DYB08_17475	COG1250	3-hydroxyacyl-CoA dehydrogenase
DYB08_17510	COG3501	Rhs element vgr protein
DYB08_17515	COG3209	COG3209 Rhs family protein
DYB08_17530	COG0583	DNA-binding transcription factor activity
DYB08_17535	COG1914	H( )-stimulated, divalent metal cation uptake system
DYB08_17555	COG4770	biotin carboxylase activity
DYB08_17560	COG0038	chloride channel
DYB08_17585	COG1309	transcriptional regulator
DYB08_17595	COG1063	alcohol dehydrogenase
DYB08_17610	COG0439	Biotin carboxylase
DYB08_17615	COG2249	NAD(P)H dehydrogenase (quinone) activity
DYB08_17635	COG0864	Transcriptional regulator
DYB08_17645	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DYB08_17650	COG1116	anion transmembrane transporter activity
DYB08_17725	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DYB08_17725	COG2885	chlorophyll binding
DYB08_17765	COG0583	DNA-binding transcription factor activity
DYB08_17775	COG0590	tRNA wobble adenosine to inosine editing
DYB08_17780	COG2807	transmembrane transport
DYB08_17795	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DYB08_17810	COG0789	Transcriptional regulator
DYB08_17825	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DYB08_17845	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DYB08_17855	COG0446	pyridine nucleotide-disulphide oxidoreductase
DYB08_17870	COG1012	belongs to the aldehyde dehydrogenase family
DYB08_17875	COG0531	amino acid
DYB08_17880	COG1760	l-serine dehydratase
DYB08_17885	COG1012	belongs to the aldehyde dehydrogenase family
DYB08_17885	COG2030	dehydratase
DYB08_17890	COG3396	Phenylacetate-CoA oxygenase
DYB08_17895	COG3460	Phenylacetate-CoA oxygenase
DYB08_17900	COG3396	Phenylacetate-CoA oxygenase
DYB08_17905	COG2151	metal-sulfur cluster biosynthetic enzyme
DYB08_17910	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DYB08_17915	COG1024	Enoyl-CoA hydratase
DYB08_17920	COG1024	Enoyl-CoA hydratase
DYB08_17925	COG1250	3-hydroxyacyl-CoA dehydrogenase
DYB08_17930	COG0183	Belongs to the thiolase family
DYB08_17935	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
DYB08_17940	COG3327	negative regulation of DNA-templated transcription, initiation
DYB08_17950	COG2050	protein possibly involved in aromatic compounds catabolism
DYB08_17990	COG0753	catalase activity
DYB08_17995	COG3038	cytochrome b561
DYB08_18015	COG2267	carboxylic ester hydrolase activity
DYB08_18020	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DYB08_18025	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DYB08_18030	COG1012	belongs to the aldehyde dehydrogenase family
DYB08_18040	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
DYB08_18050	COG1012	belongs to the aldehyde dehydrogenase family
DYB08_18055	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DYB08_18060	COG0583	DNA-binding transcription factor activity
DYB08_18070	COG1414	Transcriptional regulator
DYB08_18075	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYB08_18085	COG1840	ABC-type Fe3 transport system, periplasmic component
DYB08_18090	COG3842	ATPase activity
DYB08_18105	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DYB08_18110	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DYB08_18115	COG2814	Major facilitator Superfamily
DYB08_18120	COG1960	acyl-CoA dehydrogenase activity
DYB08_18145	COG1024	Enoyl-CoA hydratase
DYB08_18155	COG2814	Major facilitator Superfamily
DYB08_18165	COG0183	Belongs to the thiolase family
DYB08_18170	COG1250	3-hydroxyacyl-CoA dehydrogenase
DYB08_18175	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_18180	COG1024	Enoyl-CoA hydratase
DYB08_18185	COG1960	acyl-CoA dehydrogenase activity
DYB08_18190	COG2814	Major facilitator Superfamily
DYB08_18195	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DYB08_18200	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DYB08_18210	COG2814	Major facilitator Superfamily
DYB08_18220	COG1960	acyl-CoA dehydrogenase activity
DYB08_18235	COG0583	DNA-binding transcription factor activity
DYB08_18250	COG1024	Enoyl-CoA hydratase
DYB08_18255	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DYB08_18260	COG1960	acyl-CoA dehydrogenase activity
DYB08_18265	COG1309	transcriptional regulator
DYB08_18270	COG0318	PFAM AMP-dependent synthetase and ligase
DYB08_18290	COG0583	DNA-binding transcription factor activity
DYB08_18335	COG1028	Short-chain dehydrogenase reductase Sdr
DYB08_18355	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DYB08_18375	COG2205	protein histidine kinase activity
DYB08_18375	COG0784	Response regulator, receiver
DYB08_18395	COG0765	amino acid transport
DYB08_18400	COG0765	amino acid transport
DYB08_18405	COG1126	abc transporter atp-binding protein
DYB08_18410	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DYB08_18415	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DYB08_18430	COG1280	lysine exporter protein (LysE YggA)
DYB08_18440	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DYB08_18445	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYB08_18450	COG1045	serine acetyltransferase
DYB08_18465	COG0583	DNA-binding transcription factor activity
DYB08_18470	COG0625	glutathione transferase activity
DYB08_18475	COG0625	glutathione transferase activity
DYB08_18480	COG0583	DNA-binding transcription factor activity
DYB08_18490	COG1346	cytolysis
DYB08_18510	COG2814	Major facilitator Superfamily
DYB08_18520	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
DYB08_18525	COG3052	prosthetic group binding
DYB08_18545	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DYB08_18565	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DYB08_18575	COG1294	oxidase, subunit
DYB08_18580	COG1271	oxidase subunit
DYB08_18605	COG0477	Major facilitator Superfamily
DYB08_18630	COG4521	taurine ABC transporter
DYB08_18635	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
DYB08_18640	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYB08_18645	COG2175	clavaminate synthase activity
DYB08_18655	COG1953	Uracil, thiamine, allantoin
DYB08_18665	COG0583	DNA-binding transcription factor activity
DYB08_18675	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
DYB08_18690	COG0640	Transcriptional regulator
DYB08_18695	COG0798	PFAM Bile acid sodium symporter
DYB08_18700	COG0583	DNA-binding transcription factor activity
DYB08_18715	COG3634	alkyl hydroperoxide reductase activity
DYB08_18770	COG0436	Aminotransferase
DYB08_18780	COG0386	Belongs to the glutathione peroxidase family
DYB08_18820	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DYB08_18845	COG0012	GTP binding
DYB08_18850	COG2011	ABC-type metal ion transport system permease component
DYB08_18855	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DYB08_18865	COG1464	Belongs to the NlpA lipoprotein family
DYB08_18895	COG0765	amino acid transport
DYB08_18900	COG0765	amino acid transport
DYB08_18905	COG1126	abc transporter atp-binding protein
DYB08_18915	COG1522	sequence-specific DNA binding
DYB08_18930	COG1309	transcriptional regulator
DYB08_18955	COG0583	DNA-binding transcription factor activity
DYB08_18965	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
DYB08_18975	COG0697	spore germination
DYB08_19005	COG3121	Chaperone
DYB08_19010	COG3539	Fimbrial protein
DYB08_19035	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DYB08_19035	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DYB08_19080	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DYB08_19090	COG2353	YceI-like domain
DYB08_19100	COG3698	Phosphodiester glycosidase
DYB08_19115	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
DYB08_19120	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DYB08_19120	COG0506	proline dehydrogenase activity
DYB08_19120	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DYB08_19130	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DYB08_19135	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DYB08_19155	COG1132	(ABC) transporter
DYB08_19160	COG3122	Protein conserved in bacteria
DYB08_19165	COG3619	membrane
DYB08_19185	COG0640	Transcriptional regulator
DYB08_19195	COG2850	peptidyl-arginine hydroxylation
DYB08_19200	COG0424	maF-like protein
DYB08_19220	COG0191	fructose-bisphosphate aldolase activity
DYB08_19225	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DYB08_19240	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DYB08_19250	COG1192	Involved in chromosome partitioning
DYB08_19255	COG1475	DNA binding
DYB08_19260	COG0811	peptide transport
DYB08_19270	COG1132	(ABC) transporter
DYB08_19275	COG1663	tetraacyldisaccharide 4'-kinase activity
DYB08_19295	COG0084	hydrolase, TatD family'
DYB08_19310	COG2165	general secretion pathway protein
DYB08_19340	COG0590	tRNA wobble adenosine to inosine editing
DYB08_19360	COG0776	regulation of translation
DYB08_19405	COG0791	NLP P60 protein
DYB08_19515	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DYB08_19520	COG1475	DNA binding
DYB08_19715	COG3316	Transposase and inactivated derivatives
DYB08_19730	COG3173	Aminoglycoside phosphotransferase
DYB08_19740	COG3316	Transposase and inactivated derivatives
DYB08_19800	COG0756	dUTP diphosphatase activity
DYB08_19825	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYB08_19830	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYB08_19830	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DYB08_19855	COG0419	ATPase involved in DNA repair
DYB08_19900	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DYB08_19955	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DYB08_19980	COG0194	GDP metabolic process
DYB08_20020	COG0358	DNA primase activity
DYB08_20095	COG4683	PFAM Phage derived protein Gp49-like (DUF891)