locus-tag class description LQQ45_00005 PF00579 tRNA synthetases class I (W and Y) LQQ45_00010 PF03702 Anhydro-N-acetylmuramic acid kinase LQQ45_00015 PF00561 alpha/beta hydrolase fold LQQ45_00020 PF01521 Iron-sulphur cluster biosynthesis LQQ45_00040 PF00005 ABC transporter LQQ45_00040 PF12848 ABC transporter LQQ45_00045 PF09335 SNARE associated Golgi protein LQQ45_00055 PF01751 Toprim domain LQQ45_00055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_00055 PF18053 DNA gyrase B subunit insert domain LQQ45_00055 PF00204 DNA gyrase B LQQ45_00055 PF00986 DNA gyrase B subunit, carboxyl terminus LQQ45_00060 PF02463 RecF/RecN/SMC N terminal domain LQQ45_00065 PF02767 DNA polymerase III beta subunit, central domain LQQ45_00065 PF00712 DNA polymerase III beta subunit, N-terminal domain LQQ45_00065 PF02768 DNA polymerase III beta subunit, C-terminal domain LQQ45_00070 PF08299 Bacterial dnaA protein helix-turn-helix LQQ45_00070 PF11638 DnaA N-terminal domain LQQ45_00070 PF00308 Bacterial dnaA protein LQQ45_00075 PF00468 Ribosomal protein L34 LQQ45_00080 PF00825 Ribonuclease P LQQ45_00085 PF01809 Putative membrane protein insertion efficiency factor LQQ45_00090 PF02096 60Kd inner membrane protein LQQ45_00090 PF14849 YidC periplasmic domain LQQ45_00095 PF12631 MnmE helical domain LQQ45_00095 PF01926 50S ribosome-binding GTPase LQQ45_00095 PF10396 GTP-binding protein TrmE N-terminus LQQ45_00100 PF02583 Metal-sensitive transcriptional repressor LQQ45_00105 PF01545 Cation efflux family LQQ45_00105 PF16916 Dimerisation domain of Zinc Transporter LQQ45_00110 PF10411 Disulfide bond isomerase protein N-terminus LQQ45_00110 PF13098 Thioredoxin-like domain LQQ45_00120 PF00156 Phosphoribosyl transferase domain LQQ45_00125 PF01979 Amidohydrolase family LQQ45_00130 PF00355 Rieske [2Fe-2S] domain LQQ45_00135 PF03738 Glutathionylspermidine synthase preATP-grasp LQQ45_00145 PF03741 Integral membrane protein TerC family LQQ45_00150 PF01569 PAP2 superfamily LQQ45_00160 PF01225 Mur ligase family, catalytic domain LQQ45_00160 PF02875 Mur ligase family, glutamate ligase domain LQQ45_00160 PF08245 Mur ligase middle domain LQQ45_00170 PF00731 AIR carboxylase LQQ45_00175 PF02222 ATP-grasp domain LQQ45_00175 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LQQ45_00180 PF13406 Transglycosylase SLT domain LQQ45_00200 PF00012 Hsp70 protein LQQ45_00205 PF01025 GrpE LQQ45_00210 PF03466 LysR substrate binding domain LQQ45_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_00230 PF07859 alpha/beta hydrolase fold LQQ45_00235 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LQQ45_00275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQQ45_00280 PF01252 Signal peptidase (SPase) II LQQ45_00285 PF08264 Anticodon-binding domain of tRNA LQQ45_00285 PF06827 Zinc finger found in FPG and IleRS LQQ45_00285 PF00133 tRNA synthetases class I (I, L, M and V) LQQ45_00290 PF06574 FAD synthetase LQQ45_00290 PF01687 Riboflavin kinase LQQ45_00300 PF01048 Phosphorylase superfamily LQQ45_00305 PF08362 YcdC-like protein, C-terminal region LQQ45_00305 PF00440 Bacterial regulatory proteins, tetR family LQQ45_00310 PF00005 ABC transporter LQQ45_00315 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_00320 PF00296 Luciferase-like monooxygenase LQQ45_00325 PF09084 NMT1/THI5 like LQQ45_00330 PF09084 NMT1/THI5 like LQQ45_00335 PF00583 Acetyltransferase (GNAT) family LQQ45_00335 PF00696 Amino acid kinase family LQQ45_00350 PF00106 short chain dehydrogenase LQQ45_00355 PF13419 Haloacid dehalogenase-like hydrolase LQQ45_00365 PF01323 DSBA-like thioredoxin domain LQQ45_00370 PF00440 Bacterial regulatory proteins, tetR family LQQ45_00370 PF08360 QacR-like protein, C-terminal region LQQ45_00375 PF00440 Bacterial regulatory proteins, tetR family LQQ45_00380 PF00175 Oxidoreductase NAD-binding domain LQQ45_00385 PF00487 Fatty acid desaturase LQQ45_00390 PF03725 3' exoribonuclease family, domain 2 LQQ45_00390 PF01138 3' exoribonuclease family, domain 1 LQQ45_00395 PF05506 Domain of unknown function (DUF756) LQQ45_00395 PF04185 Phosphoesterase family LQQ45_00405 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LQQ45_00405 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LQQ45_00410 PF01510 N-acetylmuramoyl-L-alanine amidase LQQ45_00415 PF03023 Lipid II flippase MurJ LQQ45_00420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQQ45_00420 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LQQ45_00425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQQ45_00425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LQQ45_00430 PF02706 Chain length determinant protein LQQ45_00430 PF13807 G-rich domain on putative tyrosine kinase LQQ45_00430 PF13614 AAA domain LQQ45_00435 PF01451 Low molecular weight phosphotyrosine protein phosphatase LQQ45_00440 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LQQ45_00440 PF10531 SLBB domain LQQ45_00440 PF02563 Polysaccharide biosynthesis/export protein LQQ45_00445 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LQQ45_00445 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LQQ45_00445 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LQQ45_00450 PF01370 NAD dependent epimerase/dehydratase family LQQ45_00460 PF00534 Glycosyl transferases group 1 LQQ45_00460 PF13439 Glycosyltransferase Family 4 LQQ45_00470 PF01168 Alanine racemase, N-terminal domain LQQ45_00470 PF00842 Alanine racemase, C-terminal domain LQQ45_00470 PF01757 Acyltransferase family LQQ45_00475 PF13477 Glycosyl transferase 4-like LQQ45_00475 PF00534 Glycosyl transferases group 1 LQQ45_00480 PF02397 Bacterial sugar transferase LQQ45_00485 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_00485 PF17836 PglD N-terminal domain LQQ45_00485 PF14602 Hexapeptide repeat of succinyl-transferase LQQ45_00490 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQQ45_00495 PF02719 Polysaccharide biosynthesis protein LQQ45_00500 PF00483 Nucleotidyl transferase LQQ45_00505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LQQ45_00505 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LQQ45_00505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LQQ45_00510 PF00342 Phosphoglucose isomerase LQQ45_00515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LQQ45_00515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LQQ45_00515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LQQ45_00515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LQQ45_00520 PF02652 L-lactate permease LQQ45_00525 PF07729 FCD domain LQQ45_00525 PF00392 Bacterial regulatory proteins, gntR family LQQ45_00530 PF01070 FMN-dependent dehydrogenase LQQ45_00535 PF01565 FAD binding domain LQQ45_00535 PF09330 D-lactate dehydrogenase, membrane binding LQQ45_00540 PF00155 Aminotransferase class I and II LQQ45_00545 PF07729 FCD domain LQQ45_00545 PF00392 Bacterial regulatory proteins, gntR family LQQ45_00555 PF00285 Citrate synthase, C-terminal domain LQQ45_00560 PF00330 Aconitase family (aconitate hydratase) LQQ45_00560 PF00694 Aconitase C-terminal domain LQQ45_00610 PF00849 RNA pseudouridylate synthase LQQ45_00625 PF00593 TonB dependent receptor LQQ45_00625 PF07715 TonB-dependent Receptor Plug Domain LQQ45_00635 PF01037 Lrp/AsnC ligand binding domain LQQ45_00640 PF01266 FAD dependent oxidoreductase LQQ45_00645 PF01168 Alanine racemase, N-terminal domain LQQ45_00645 PF00842 Alanine racemase, C-terminal domain LQQ45_00650 PF01042 Endoribonuclease L-PSP LQQ45_00655 PF00324 Amino acid permease LQQ45_00660 PF00324 Amino acid permease LQQ45_00670 PF00171 Aldehyde dehydrogenase family LQQ45_00675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LQQ45_00675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LQQ45_00680 PF13193 AMP-binding enzyme C-terminal domain LQQ45_00680 PF00501 AMP-binding enzyme LQQ45_00685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_00685 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_00685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_00690 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_00695 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_00700 PF07690 Major Facilitator Superfamily LQQ45_00700 PF00083 Sugar (and other) transporter LQQ45_00705 PF00765 Autoinducer synthase LQQ45_00715 PF00196 Bacterial regulatory proteins, luxR family LQQ45_00715 PF03472 Autoinducer binding domain LQQ45_00720 PF00501 AMP-binding enzyme LQQ45_00725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_00725 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_00725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_00730 PF08242 Methyltransferase domain LQQ45_00730 PF14765 Polyketide synthase dehydratase LQQ45_00730 PF00109 Beta-ketoacyl synthase, N-terminal domain LQQ45_00730 PF02801 Beta-ketoacyl synthase, C-terminal domain LQQ45_00730 PF00550 Phosphopantetheine attachment site LQQ45_00730 PF00975 Thioesterase domain LQQ45_00730 PF16197 Ketoacyl-synthetase C-terminal extension LQQ45_00735 PF00975 Thioesterase domain LQQ45_00735 PF00501 AMP-binding enzyme LQQ45_00735 PF13193 AMP-binding enzyme C-terminal domain LQQ45_00735 PF00668 Condensation domain LQQ45_00735 PF00550 Phosphopantetheine attachment site LQQ45_00750 PF12697 Alpha/beta hydrolase family LQQ45_00755 PF01648 4'-phosphopantetheinyl transferase superfamily LQQ45_00770 PF01722 BolA-like protein LQQ45_00780 PF13614 AAA domain LQQ45_00795 PF09335 SNARE associated Golgi protein LQQ45_00800 PF07681 DoxX LQQ45_00805 PF04286 Protein of unknown function (DUF445) LQQ45_00810 PF00117 Glutamine amidotransferase class-I LQQ45_00810 PF00958 GMP synthase C terminal domain LQQ45_00810 PF02540 NAD synthase LQQ45_00815 PF13427 Domain of unknown function (DUF4111) LQQ45_00815 PF01909 Nucleotidyltransferase domain LQQ45_00820 PF03551 Transcriptional regulator PadR-like family LQQ45_00830 PF02678 Pirin LQQ45_00830 PF05726 Pirin C-terminal cupin domain LQQ45_00850 PF03485 Arginyl tRNA synthetase N terminal domain LQQ45_00850 PF05746 DALR anticodon binding domain LQQ45_00850 PF00750 tRNA synthetases class I (R) LQQ45_00855 PF03949 Malic enzyme, NAD binding domain LQQ45_00855 PF00390 Malic enzyme, N-terminal domain LQQ45_00860 PF04261 Dyp-type peroxidase family LQQ45_00865 PF01810 LysE type translocator LQQ45_00870 PF00950 ABC 3 transport family LQQ45_00875 PF00005 ABC transporter LQQ45_00895 PF00119 ATP synthase A chain LQQ45_00900 PF00137 ATP synthase subunit C LQQ45_00905 PF00430 ATP synthase B/B' CF(0) LQQ45_00910 PF00213 ATP synthase delta (OSCP) subunit LQQ45_00915 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQQ45_00915 PF00306 ATP synthase alpha/beta chain, C terminal domain LQQ45_00915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQQ45_00920 PF00231 ATP synthase LQQ45_00925 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQQ45_00925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQQ45_00930 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LQQ45_00940 PF00255 Glutathione peroxidase LQQ45_00950 PF07690 Major Facilitator Superfamily LQQ45_00955 PF00440 Bacterial regulatory proteins, tetR family LQQ45_00960 PF00892 EamA-like transporter family LQQ45_00965 PF01300 Telomere recombination LQQ45_00970 PF02481 DNA recombination-mediator protein A LQQ45_00970 PF17782 DprA winged helix domain LQQ45_00980 PF01327 Polypeptide deformylase LQQ45_01040 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_01070 PF11842 Domain of unknown function (DUF3362) LQQ45_01070 PF04055 Radical SAM superfamily LQQ45_01070 PF08497 Radical SAM N-terminal LQQ45_01090 PF00817 impB/mucB/samB family LQQ45_01090 PF11799 impB/mucB/samB family C-terminal domain LQQ45_01090 PF11798 IMS family HHH motif LQQ45_01100 PF07690 Major Facilitator Superfamily LQQ45_01105 PF03641 Possible lysine decarboxylase LQQ45_01110 PF03471 Transporter associated domain LQQ45_01110 PF03741 Integral membrane protein TerC family LQQ45_01115 PF02810 SEC-C motif LQQ45_01120 PF03458 UPF0126 domain LQQ45_01125 PF07690 Major Facilitator Superfamily LQQ45_01130 PF03989 DNA gyrase C-terminal domain, beta-propeller LQQ45_01130 PF00521 DNA gyrase/topoisomerase IV, subunit A LQQ45_01135 PF00501 AMP-binding enzyme LQQ45_01135 PF13193 AMP-binding enzyme C-terminal domain LQQ45_01150 PF00719 Inorganic pyrophosphatase LQQ45_01155 PF03573 outer membrane porin, OprD family LQQ45_01170 PF00701 Dihydrodipicolinate synthetase family LQQ45_01190 PF01636 Phosphotransferase enzyme family LQQ45_01200 PF11809 Domain of unknown function (DUF3330) LQQ45_01200 PF00563 EAL domain LQQ45_01205 PF13495 Phage integrase, N-terminal SAM-like domain LQQ45_01205 PF00589 Phage integrase family LQQ45_01210 PF00583 Acetyltransferase (GNAT) family LQQ45_01225 PF00893 Small Multidrug Resistance protein LQQ45_01230 PF00809 Pterin binding enzyme LQQ45_01265 PF03743 Bacterial conjugation TrbI-like protein LQQ45_01270 PF13411 MerR HTH family regulatory protein LQQ45_01280 PF01252 Signal peptidase (SPase) II LQQ45_01295 PF01740 STAS domain LQQ45_01295 PF00916 Sulfate permease family LQQ45_01315 PF00543 Nitrogen regulatory protein P-II LQQ45_01320 PF00909 Ammonium Transporter Family LQQ45_01325 PF03477 ATP cone domain LQQ45_01330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQQ45_01330 PF01872 RibD C-terminal domain LQQ45_01340 PF00677 Lumazine binding domain LQQ45_01360 PF00883 Cytosol aminopeptidase family, catalytic domain LQQ45_01360 PF02789 Cytosol aminopeptidase family, N-terminal domain LQQ45_01370 PF03739 Lipopolysaccharide export system permease LptF/LptG LQQ45_01375 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LQQ45_01375 PF01676 Metalloenzyme superfamily LQQ45_01380 PF03572 Peptidase family S41 LQQ45_01380 PF00595 PDZ domain LQQ45_01385 PF00072 Response regulator receiver domain LQQ45_01385 PF02954 Bacterial regulatory protein, Fis family LQQ45_01385 PF00158 Sigma-54 interaction domain LQQ45_01390 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_01390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_01395 PF00072 Response regulator receiver domain LQQ45_01395 PF00196 Bacterial regulatory proteins, luxR family LQQ45_01400 PF00768 D-alanyl-D-alanine carboxypeptidase LQQ45_01405 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_01410 PF01842 ACT domain LQQ45_01410 PF03447 Homoserine dehydrogenase, NAD binding domain LQQ45_01410 PF00742 Homoserine dehydrogenase LQQ45_01415 PF10411 Disulfide bond isomerase protein N-terminus LQQ45_01415 PF13098 Thioredoxin-like domain LQQ45_01420 PF02899 Phage integrase, N-terminal SAM-like domain LQQ45_01420 PF00589 Phage integrase family LQQ45_01430 PF07670 Nucleoside recognition LQQ45_01430 PF02421 Ferrous iron transport protein B LQQ45_01430 PF07664 Ferrous iron transport protein B C terminus LQQ45_01440 PF02875 Mur ligase family, glutamate ligase domain LQQ45_01440 PF08245 Mur ligase middle domain LQQ45_01445 PF01098 Cell cycle protein LQQ45_01450 PF00749 tRNA synthetases class I (E and Q), catalytic domain LQQ45_01455 PF01258 Prokaryotic dksA/traR C4-type zinc finger LQQ45_01460 PF00149 Calcineurin-like phosphoesterase LQQ45_01465 PF00293 NUDIX domain LQQ45_01470 PF01964 Radical SAM ThiC family LQQ45_01470 PF13667 ThiC-associated domain LQQ45_01485 PF00892 EamA-like transporter family LQQ45_01490 PF02321 Outer membrane efflux protein LQQ45_01495 PF01895 PhoU domain LQQ45_01500 PF04362 Bacterial Fe(2+) trafficking LQQ45_01505 PF00206 Lyase LQQ45_01505 PF14698 Argininosuccinate lyase C-terminal LQQ45_01510 PF06580 Histidine kinase LQQ45_01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_01510 PF07694 5TMR of 5TMR-LYT LQQ45_01515 PF00072 Response regulator receiver domain LQQ45_01515 PF04397 LytTr DNA-binding domain LQQ45_01520 PF03900 Porphobilinogen deaminase, C-terminal domain LQQ45_01520 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LQQ45_01545 PF00816 H-NS histone family LQQ45_01560 PF03958 Bacterial type II/III secretion system short domain LQQ45_01560 PF00263 Bacterial type II and III secretion system protein LQQ45_01565 PF12401 Protein of unknown function (DUF2662) LQQ45_01565 PF00498 FHA domain LQQ45_01570 PF13419 Haloacid dehalogenase-like hydrolase LQQ45_01575 PF04715 Anthranilate synthase component I, N terminal region LQQ45_01575 PF00425 chorismate binding enzyme LQQ45_01600 PF00009 Elongation factor Tu GTP binding domain LQQ45_01600 PF03144 Elongation factor Tu domain 2 LQQ45_01600 PF03143 Elongation factor Tu C-terminal domain LQQ45_01610 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LQQ45_01615 PF02357 Transcription termination factor nusG LQQ45_01615 PF00467 KOW motif LQQ45_01620 PF03946 Ribosomal protein L11, N-terminal domain LQQ45_01620 PF00298 Ribosomal protein L11, RNA binding domain LQQ45_01625 PF00687 Ribosomal protein L1p/L10e family LQQ45_01630 PF00466 Ribosomal protein L10 LQQ45_01635 PF00542 Ribosomal protein L7/L12 C-terminal domain LQQ45_01635 PF16320 Ribosomal protein L7/L12 dimerisation domain LQQ45_01640 PF04561 RNA polymerase Rpb2, domain 2 LQQ45_01640 PF04563 RNA polymerase beta subunit LQQ45_01640 PF04565 RNA polymerase Rpb2, domain 3 LQQ45_01640 PF10385 RNA polymerase beta subunit external 1 domain LQQ45_01640 PF00562 RNA polymerase Rpb2, domain 6 LQQ45_01640 PF04560 RNA polymerase Rpb2, domain 7 LQQ45_01645 PF04983 RNA polymerase Rpb1, domain 3 LQQ45_01645 PF00623 RNA polymerase Rpb1, domain 2 LQQ45_01645 PF04997 RNA polymerase Rpb1, domain 1 LQQ45_01645 PF04998 RNA polymerase Rpb1, domain 5 LQQ45_01645 PF05000 RNA polymerase Rpb1, domain 4 LQQ45_01670 PF13726 Na+-H+ antiporter family LQQ45_01670 PF03553 Na+/H+ antiporter family LQQ45_01680 PF13936 Helix-turn-helix domain LQQ45_01680 PF00665 Integrase core domain LQQ45_01690 PF00183 Hsp90 protein LQQ45_01690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_01705 PF01323 DSBA-like thioredoxin domain LQQ45_01715 PF09278 MerR, DNA binding LQQ45_01715 PF00376 MerR family regulatory protein LQQ45_01730 PF00108 Thiolase, N-terminal domain LQQ45_01730 PF02803 Thiolase, C-terminal domain LQQ45_01735 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQQ45_01735 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_01735 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQQ45_01755 PF01541 GIY-YIG catalytic domain LQQ45_01755 PF02151 UvrB/uvrC motif LQQ45_01755 PF08459 UvrC Helix-hairpin-helix N-terminal LQQ45_01765 PF01066 CDP-alcohol phosphatidyltransferase LQQ45_01770 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LQQ45_01770 PF02805 Metal binding domain of Ada LQQ45_01770 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LQQ45_01770 PF12833 Helix-turn-helix domain LQQ45_01795 PF13533 Biotin-lipoyl like LQQ45_01800 PF03652 Holliday junction resolvase LQQ45_01805 PF02622 Uncharacterized ACR, COG1678 LQQ45_01810 PF02463 RecF/RecN/SMC N terminal domain LQQ45_01820 PF06865 Pyrimidine/purine nucleoside phosphorylase LQQ45_01825 PF00588 SpoU rRNA Methylase family LQQ45_01825 PF08032 RNA 2'-O ribose methyltransferase substrate binding LQQ45_01835 PF01121 Dephospho-CoA kinase LQQ45_01840 PF06750 Bacterial Peptidase A24 N-terminal domain LQQ45_01840 PF01478 Type IV leader peptidase family LQQ45_01850 PF00482 Type II secretion system (T2SS), protein F LQQ45_01855 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LQQ45_01855 PF00437 Type II/IV secretion system protein LQQ45_01860 PF00121 Triosephosphate isomerase LQQ45_01865 PF03840 Preprotein translocase SecG subunit LQQ45_01885 PF17384 RimP C-terminal SH3 domain LQQ45_01885 PF02576 RimP N-terminal domain LQQ45_01890 PF13184 NusA-like KH domain LQQ45_01890 PF00575 S1 RNA binding domain LQQ45_01890 PF08529 NusA N-terminal domain LQQ45_01895 PF11987 Translation-initiation factor 2 LQQ45_01895 PF00009 Elongation factor Tu GTP binding domain LQQ45_01895 PF08364 Bacterial translation initiation factor IF-2 associated region LQQ45_01895 PF04760 Translation initiation factor IF-2, N-terminal region LQQ45_01900 PF02033 Ribosome-binding factor A LQQ45_01905 PF03334 Na+/H+ antiporter subunit LQQ45_01910 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LQQ45_01915 PF01899 Na+/H+ ion antiporter subunit LQQ45_01920 PF00361 Proton-conducting membrane transporter LQQ45_01925 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LQQ45_01930 PF13244 Domain of unknown function (DUF4040) LQQ45_01930 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LQQ45_01930 PF00361 Proton-conducting membrane transporter LQQ45_01930 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LQQ45_01945 PF01502 Phosphoribosyl-AMP cyclohydrolase LQQ45_01950 PF01494 FAD binding domain LQQ45_01955 PF03109 ABC1 family LQQ45_01965 PF01209 ubiE/COQ5 methyltransferase family LQQ45_01975 PF03976 Polyphosphate kinase 2 (PPK2) LQQ45_01985 PF17946 RecC C-terminal domain LQQ45_01990 PF12705 PD-(D/E)XK nuclease superfamily LQQ45_01990 PF00580 UvrD/REP helicase N-terminal domain LQQ45_01990 PF13361 UvrD-like helicase C-terminal domain LQQ45_01995 PF13538 UvrD-like helicase C-terminal domain LQQ45_02000 PF00144 Beta-lactamase LQQ45_02005 PF00312 Ribosomal protein S15 LQQ45_02010 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LQQ45_02010 PF01138 3' exoribonuclease family, domain 1 LQQ45_02010 PF03725 3' exoribonuclease family, domain 2 LQQ45_02010 PF00575 S1 RNA binding domain LQQ45_02010 PF00013 KH domain LQQ45_02015 PF01544 CorA-like Mg2+ transporter protein LQQ45_02025 PF01556 DnaJ C terminal domain LQQ45_02025 PF00226 DnaJ domain LQQ45_02035 PF01430 Hsp33 protein LQQ45_02040 PF00999 Sodium/hydrogen exchanger family LQQ45_02040 PF02254 TrkA-N domain LQQ45_02045 PF00270 DEAD/DEAH box helicase LQQ45_02045 PF00271 Helicase conserved C-terminal domain LQQ45_02045 PF17764 3′ DNA-binding domain (3′BD) LQQ45_02045 PF18074 Primosomal protein N C-terminal domain LQQ45_02045 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LQQ45_02050 PF00482 Type II secretion system (T2SS), protein F LQQ45_02055 PF07963 Prokaryotic N-terminal methylation motif LQQ45_02055 PF08334 Type II secretion system (T2SS), protein G LQQ45_02065 PF01588 Putative tRNA binding domain LQQ45_02070 PF00795 Carbon-nitrogen hydrolase LQQ45_02075 PF00571 CBS domain LQQ45_02075 PF03471 Transporter associated domain LQQ45_02080 PF01206 Sulfurtransferase TusA LQQ45_02100 PF01177 Asp/Glu/Hydantoin racemase LQQ45_02110 PF00762 Ferrochelatase LQQ45_02115 PF00753 Metallo-beta-lactamase superfamily LQQ45_02120 PF03884 DNA gyrase inhibitor YacG LQQ45_02130 PF13247 4Fe-4S dicluster domain LQQ45_02130 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LQQ45_02130 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_02140 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LQQ45_02150 PF01197 Ribosomal protein L31 LQQ45_02155 PF03109 ABC1 family LQQ45_02160 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_02160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_02165 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_02165 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_02165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_02170 PF01554 MatE LQQ45_02180 PF06969 HemN C-terminal domain LQQ45_02180 PF04055 Radical SAM superfamily LQQ45_02185 PF00106 short chain dehydrogenase LQQ45_02190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_02190 PF03466 LysR substrate binding domain LQQ45_02205 PF00501 AMP-binding enzyme LQQ45_02205 PF13193 AMP-binding enzyme C-terminal domain LQQ45_02210 PF00575 S1 RNA binding domain LQQ45_02210 PF10150 Ribonuclease E/G family LQQ45_02210 PF12111 Polyribonucleotide phosphorylase C terminal LQQ45_02220 PF00849 RNA pseudouridylate synthase LQQ45_02220 PF01479 S4 domain LQQ45_02225 PF13419 Haloacid dehalogenase-like hydrolase LQQ45_02230 PF08279 HTH domain LQQ45_02230 PF13280 WYL domain LQQ45_02235 PF02798 Glutathione S-transferase, N-terminal domain LQQ45_02245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_02245 PF03466 LysR substrate binding domain LQQ45_02250 PF12706 Beta-lactamase superfamily domain LQQ45_02255 PF00141 Peroxidase LQQ45_02260 PF01590 GAF domain LQQ45_02260 PF05524 PEP-utilising enzyme, N-terminal LQQ45_02260 PF00391 PEP-utilising enzyme, mobile domain LQQ45_02260 PF02896 PEP-utilising enzyme, TIM barrel domain LQQ45_02265 PF00293 NUDIX domain LQQ45_02275 PF03466 LysR substrate binding domain LQQ45_02275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_02285 PF00330 Aconitase family (aconitate hydratase) LQQ45_02290 PF00694 Aconitase C-terminal domain LQQ45_02300 PF00180 Isocitrate/isopropylmalate dehydrogenase LQQ45_02315 PF01176 Translation initiation factor 1A / IF-1 LQQ45_02325 PF01416 tRNA pseudouridine synthase LQQ45_02345 PF01118 Semialdehyde dehydrogenase, NAD binding domain LQQ45_02345 PF02774 Semialdehyde dehydrogenase, dimerisation domain LQQ45_02355 PF00375 Sodium:dicarboxylate symporter family LQQ45_02365 PF03279 Bacterial lipid A biosynthesis acyltransferase LQQ45_02370 PF01810 LysE type translocator LQQ45_02375 PF12848 ABC transporter LQQ45_02375 PF16326 ABC transporter C-terminal domain LQQ45_02375 PF00005 ABC transporter LQQ45_02380 PF04102 SlyX LQQ45_02385 PF00107 Zinc-binding dehydrogenase LQQ45_02385 PF08240 Alcohol dehydrogenase GroES-like domain LQQ45_02390 PF01638 HxlR-like helix-turn-helix LQQ45_02400 PF01396 Topoisomerase DNA binding C4 zinc finger LQQ45_02400 PF01751 Toprim domain LQQ45_02400 PF01131 DNA topoisomerase LQQ45_02400 PF08272 Topoisomerase I zinc-ribbon-like LQQ45_02415 PF13361 UvrD-like helicase C-terminal domain LQQ45_02415 PF00580 UvrD/REP helicase N-terminal domain LQQ45_02420 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LQQ45_02440 PF02254 TrkA-N domain LQQ45_02440 PF00999 Sodium/hydrogen exchanger family LQQ45_02445 PF00471 Ribosomal protein L33 LQQ45_02450 PF00830 Ribosomal L28 family LQQ45_02455 PF00171 Aldehyde dehydrogenase family LQQ45_02465 PF00551 Formyl transferase LQQ45_02465 PF01842 ACT domain LQQ45_02475 PF01618 MotA/TolQ/ExbB proton channel family LQQ45_02485 PF01625 Peptide methionine sulfoxide reductase LQQ45_02495 PF00186 Dihydrofolate reductase LQQ45_02500 PF00303 Thymidylate synthase LQQ45_02515 PF01790 Prolipoprotein diacylglyceryl transferase LQQ45_02535 PF00902 Sec-independent protein translocase protein (TatC) LQQ45_02540 PF02416 mttA/Hcf106 family LQQ45_02545 PF02416 mttA/Hcf106 family LQQ45_02555 PF01725 Ham1 family LQQ45_02565 PF07021 Methionine biosynthesis protein MetW LQQ45_02565 PF00561 alpha/beta hydrolase fold LQQ45_02570 PF00561 alpha/beta hydrolase fold LQQ45_02575 PF08502 LeuA allosteric (dimerisation) domain LQQ45_02575 PF00682 HMGL-like LQQ45_02580 PF13640 2OG-Fe(II) oxygenase superfamily LQQ45_02580 PF18331 PKHD-type hydroxylase C-terminal domain LQQ45_02585 PF00593 TonB dependent receptor LQQ45_02585 PF07715 TonB-dependent Receptor Plug Domain LQQ45_02590 PF05697 Bacterial trigger factor protein (TF) LQQ45_02590 PF05698 Bacterial trigger factor protein (TF) C-terminus LQQ45_02590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQQ45_02595 PF00574 Clp protease LQQ45_02600 PF06689 ClpX C4-type zinc finger LQQ45_02600 PF10431 C-terminal, D2-small domain, of ClpB protein LQQ45_02600 PF07724 AAA domain (Cdc48 subfamily) LQQ45_02615 PF05683 Fumarase C-terminus LQQ45_02615 PF05681 Fumarate hydratase (Fumerase) LQQ45_02620 PF01515 Phosphate acetyl/butaryl transferase LQQ45_02620 PF07085 DRTGG domain LQQ45_02625 PF00871 Acetokinase family LQQ45_02630 PF00920 Dehydratase family LQQ45_02635 PF01081 KDPG and KHG aldolase LQQ45_02640 PF02447 GntP family permease LQQ45_02645 PF01202 Shikimate kinase LQQ45_02650 PF00171 Aldehyde dehydrogenase family LQQ45_02655 PF00171 Aldehyde dehydrogenase family LQQ45_02660 PF00561 alpha/beta hydrolase fold LQQ45_02670 PF00933 Glycosyl hydrolase family 3 N terminal domain LQQ45_02675 PF17804 Tail specific protease N-terminal domain LQQ45_02675 PF11818 C-terminal domain of tail specific protease (DUF3340) LQQ45_02675 PF00595 PDZ domain LQQ45_02675 PF03572 Peptidase family S41 LQQ45_02680 PF00534 Glycosyl transferases group 1 LQQ45_02680 PF13439 Glycosyltransferase Family 4 LQQ45_02685 PF01569 PAP2 superfamily LQQ45_02690 PF04384 Iron-sulphur cluster assembly LQQ45_02695 PF00334 Nucleoside diphosphate kinase LQQ45_02700 PF04055 Radical SAM superfamily LQQ45_02710 PF13464 Domain of unknown function (DUF4115) LQQ45_02715 PF04551 GcpE protein LQQ45_02720 PF13393 Histidyl-tRNA synthetase LQQ45_02720 PF03129 Anticodon binding domain LQQ45_02730 PF13360 PQQ-like domain LQQ45_02735 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LQQ45_02735 PF01926 50S ribosome-binding GTPase LQQ45_02745 PF02556 Preprotein translocase subunit SecB LQQ45_02750 PF00462 Glutaredoxin LQQ45_02760 PF03193 RsgA GTPase LQQ45_02765 PF00929 Exonuclease LQQ45_02780 PF02321 Outer membrane efflux protein LQQ45_02785 PF00005 ABC transporter LQQ45_02785 PF02687 FtsX-like permease family LQQ45_02785 PF12704 MacB-like periplasmic core domain LQQ45_02790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQQ45_02805 PF09334 tRNA synthetases class I (M) LQQ45_02805 PF00133 tRNA synthetases class I (I, L, M and V) LQQ45_02805 PF13603 Leucyl-tRNA synthetase, Domain 2 LQQ45_02805 PF08264 Anticodon-binding domain of tRNA LQQ45_02815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQQ45_02815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQQ45_02815 PF00205 Thiamine pyrophosphate enzyme, central domain LQQ45_02820 PF10369 Small subunit of acetolactate synthase LQQ45_02825 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LQQ45_02825 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LQQ45_02830 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_02830 PF03707 Bacterial signalling protein N terminal repeat LQQ45_02830 PF00563 EAL domain LQQ45_02855 PF00009 Elongation factor Tu GTP binding domain LQQ45_02855 PF03144 Elongation factor Tu domain 2 LQQ45_02855 PF16658 Class II release factor RF3, C-terminal domain LQQ45_02870 PF01026 TatD related DNase LQQ45_02875 PF00694 Aconitase C-terminal domain LQQ45_02875 PF00330 Aconitase family (aconitate hydratase) LQQ45_02880 PF00899 ThiF family LQQ45_02890 PF03466 LysR substrate binding domain LQQ45_02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_02900 PF01207 Dihydrouridine synthase (Dus) LQQ45_02905 PF00589 Phage integrase family LQQ45_02980 PF04945 YHS domain LQQ45_02985 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_02985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_02985 PF00672 HAMP domain LQQ45_02990 PF00486 Transcriptional regulatory protein, C terminal LQQ45_02990 PF00072 Response regulator receiver domain LQQ45_03025 PF07690 Major Facilitator Superfamily LQQ45_03040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LQQ45_03040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LQQ45_03045 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LQQ45_03065 PF01261 Xylose isomerase-like TIM barrel LQQ45_03070 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LQQ45_03070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LQQ45_03075 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_03080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQQ45_03080 PF01627 Hpt domain LQQ45_03080 PF00072 Response regulator receiver domain LQQ45_03080 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_03080 PF00672 HAMP domain LQQ45_03080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_03085 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_03110 PF03819 MazG nucleotide pyrophosphohydrolase domain LQQ45_03120 PF01743 Poly A polymerase head domain LQQ45_03120 PF12626 Polymerase A arginine-rich C-terminus LQQ45_03120 PF12627 Probable RNA and SrmB- binding site of polymerase A LQQ45_03125 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LQQ45_03130 PF02548 Ketopantoate hydroxymethyltransferase LQQ45_03135 PF02569 Pantoate-beta-alanine ligase LQQ45_03140 PF03668 P-loop ATPase protein family LQQ45_03145 PF00381 PTS HPr component phosphorylation site LQQ45_03155 PF00501 AMP-binding enzyme LQQ45_03155 PF13193 AMP-binding enzyme C-terminal domain LQQ45_03160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQQ45_03160 PF03129 Anticodon binding domain LQQ45_03160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LQQ45_03160 PF02824 TGS domain LQQ45_03165 PF00707 Translation initiation factor IF-3, C-terminal domain LQQ45_03165 PF05198 Translation initiation factor IF-3, N-terminal domain LQQ45_03170 PF00043 Glutathione S-transferase, C-terminal domain LQQ45_03170 PF02798 Glutathione S-transferase, N-terminal domain LQQ45_03180 PF07690 Major Facilitator Superfamily LQQ45_03190 PF01632 Ribosomal protein L35 LQQ45_03195 PF00453 Ribosomal protein L20 LQQ45_03215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LQQ45_03215 PF01588 Putative tRNA binding domain LQQ45_03215 PF03483 B3/4 domain LQQ45_03215 PF03484 tRNA synthetase B5 domain LQQ45_03215 PF03147 Ferredoxin-fold anticodon binding domain LQQ45_03220 PF00216 Bacterial DNA-binding protein LQQ45_03235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQQ45_03235 PF07498 Rho termination factor, N-terminal domain LQQ45_03235 PF07497 Rho termination factor, RNA-binding domain LQQ45_03240 PF00085 Thioredoxin LQQ45_03250 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LQQ45_03255 PF11734 TilS substrate C-terminal domain LQQ45_03255 PF01171 PP-loop family LQQ45_03255 PF09179 TilS substrate binding domain LQQ45_03265 PF02325 YGGT family LQQ45_03290 PF00437 Type II/IV secretion system protein LQQ45_03295 PF02566 OsmC-like protein LQQ45_03360 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LQQ45_03365 PF01722 BolA-like protein LQQ45_03375 PF01634 ATP phosphoribosyltransferase LQQ45_03380 PF00815 Histidinol dehydrogenase LQQ45_03385 PF00155 Aminotransferase class I and II LQQ45_03390 PF00425 chorismate binding enzyme LQQ45_03390 PF04715 Anthranilate synthase component I, N terminal region LQQ45_03430 PF00293 NUDIX domain LQQ45_03435 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_03440 PF00814 Glycoprotease family LQQ45_03445 PF04445 Putative SAM-dependent methyltransferase LQQ45_03455 PF00756 Putative esterase LQQ45_03465 PF00834 Ribulose-phosphate 3 epimerase family LQQ45_03480 PF07732 Multicopper oxidase LQQ45_03480 PF00394 Multicopper oxidase LQQ45_03480 PF07731 Multicopper oxidase LQQ45_03485 PF05275 Copper resistance protein B precursor (CopB) LQQ45_03495 PF00893 Small Multidrug Resistance protein LQQ45_03500 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LQQ45_03500 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LQQ45_03505 PF01960 ArgJ family LQQ45_03510 PF02445 Quinolinate synthetase A protein LQQ45_03535 PF00962 Adenosine/AMP deaminase LQQ45_03540 PF00107 Zinc-binding dehydrogenase LQQ45_03540 PF08240 Alcohol dehydrogenase GroES-like domain LQQ45_03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_03545 PF03466 LysR substrate binding domain LQQ45_03550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_03550 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_03550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_03555 PF07690 Major Facilitator Superfamily LQQ45_03560 PF02515 CoA-transferase family III LQQ45_03570 PF14537 Cytochrome c3 LQQ45_03570 PF00890 FAD binding domain LQQ45_03575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_03575 PF03466 LysR substrate binding domain LQQ45_03585 PF07690 Major Facilitator Superfamily LQQ45_03590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_03590 PF03466 LysR substrate binding domain LQQ45_03600 PF07687 Peptidase dimerisation domain LQQ45_03600 PF01546 Peptidase family M20/M25/M40 LQQ45_03605 PF12833 Helix-turn-helix domain LQQ45_03605 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LQQ45_03615 PF01810 LysE type translocator LQQ45_03620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_03620 PF03466 LysR substrate binding domain LQQ45_03630 PF08267 Cobalamin-independent synthase, N-terminal domain LQQ45_03630 PF01717 Cobalamin-independent synthase, Catalytic domain LQQ45_03635 PF01613 Flavin reductase like domain LQQ45_03640 PF16295 Tetracyclin repressor-like, C-terminal domain LQQ45_03640 PF00440 Bacterial regulatory proteins, tetR family LQQ45_03670 PF02567 Phenazine biosynthesis-like protein LQQ45_03680 PF00268 Ribonucleotide reductase, small chain LQQ45_03690 PF03477 ATP cone domain LQQ45_03690 PF02867 Ribonucleotide reductase, barrel domain LQQ45_03690 PF00317 Ribonucleotide reductase, all-alpha domain LQQ45_03700 PF00072 Response regulator receiver domain LQQ45_03700 PF00486 Transcriptional regulatory protein, C terminal LQQ45_03705 PF00672 HAMP domain LQQ45_03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_03705 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_03715 PF17151 Periplasmic sensor domain LQQ45_03715 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_03720 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LQQ45_03725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LQQ45_03730 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LQQ45_03730 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LQQ45_03740 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LQQ45_03740 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LQQ45_03740 PF10531 SLBB domain LQQ45_03745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LQQ45_03745 PF00384 Molybdopterin oxidoreductase LQQ45_03745 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LQQ45_03750 PF00146 NADH dehydrogenase LQQ45_03755 PF12838 4Fe-4S dicluster domain LQQ45_03760 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LQQ45_03765 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LQQ45_03770 PF00361 Proton-conducting membrane transporter LQQ45_03770 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LQQ45_03775 PF00361 Proton-conducting membrane transporter LQQ45_03780 PF00361 Proton-conducting membrane transporter LQQ45_03790 PF00313 'Cold-shock' DNA-binding domain LQQ45_03800 PF03466 LysR substrate binding domain LQQ45_03800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_03805 PF00970 Oxidoreductase FAD-binding domain LQQ45_03805 PF00175 Oxidoreductase NAD-binding domain LQQ45_03820 PF05552 Conserved TM helix LQQ45_03835 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_03840 PF13533 Biotin-lipoyl like LQQ45_03865 PF01588 Putative tRNA binding domain LQQ45_03865 PF09334 tRNA synthetases class I (M) LQQ45_03875 PF10609 NUBPL iron-transfer P-loop NTPase LQQ45_03880 PF01048 Phosphorylase superfamily LQQ45_03895 PF00692 dUTPase LQQ45_03925 PF01207 Dihydrouridine synthase (Dus) LQQ45_03935 PF00448 SRP54-type protein, GTPase domain LQQ45_03935 PF02881 SRP54-type protein, helical bundle domain LQQ45_03935 PF02978 Signal peptide binding domain LQQ45_03940 PF03309 Type III pantothenate kinase LQQ45_03950 PF01925 Sulfite exporter TauE/SafE LQQ45_03960 PF06470 SMC proteins Flexible Hinge Domain LQQ45_03960 PF02463 RecF/RecN/SMC N terminal domain LQQ45_03970 PF00533 BRCA1 C Terminus (BRCT) domain LQQ45_03970 PF01653 NAD-dependent DNA ligase adenylation domain LQQ45_03970 PF03120 NAD-dependent DNA ligase OB-fold domain LQQ45_03970 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LQQ45_03970 PF12826 Helix-hairpin-helix motif LQQ45_03975 PF00210 Ferritin-like domain LQQ45_03980 PF07690 Major Facilitator Superfamily LQQ45_03985 PF00982 Glycosyltransferase family 20 LQQ45_03990 PF02358 Trehalose-phosphatase LQQ45_03995 PF12697 Alpha/beta hydrolase family LQQ45_03995 PF08241 Methyltransferase domain LQQ45_04000 PF00202 Aminotransferase class-III LQQ45_04000 PF06968 Biotin and Thiamin Synthesis associated domain LQQ45_04000 PF04055 Radical SAM superfamily LQQ45_04005 PF00155 Aminotransferase class I and II LQQ45_04020 PF01479 S4 domain LQQ45_04020 PF00849 RNA pseudouridylate synthase LQQ45_04025 PF04079 Segregation and condensation complex subunit ScpB LQQ45_04030 PF02616 Segregation and condensation protein ScpA LQQ45_04035 PF01300 Telomere recombination LQQ45_04040 PF04315 Elongation factor P hydroxylase LQQ45_04045 PF02620 Large ribosomal RNA subunit accumulation protein YceD LQQ45_04050 PF01783 Ribosomal L32p protein family LQQ45_04055 PF00698 Acyl transferase domain LQQ45_04065 PF00550 Phosphopantetheine attachment site LQQ45_04070 PF04972 BON domain LQQ45_04070 PF01476 LysM domain LQQ45_04075 PF08543 Phosphomethylpyrimidine kinase LQQ45_04075 PF03070 TENA/THI-4/PQQC family LQQ45_04075 PF02581 Thiamine monophosphate synthase LQQ45_04085 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LQQ45_04100 PF02261 Aspartate decarboxylase LQQ45_04105 PF01195 Peptidyl-tRNA hydrolase LQQ45_04110 PF01386 Ribosomal L25p family LQQ45_04115 PF14572 Phosphoribosyl synthetase-associated domain LQQ45_04115 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LQQ45_04140 PF08544 GHMP kinases C terminal LQQ45_04140 PF00288 GHMP kinases N terminal domain LQQ45_04145 PF03550 Outer membrane lipoprotein LolB LQQ45_04155 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LQQ45_04155 PF01488 Shikimate / quinate 5-dehydrogenase LQQ45_04155 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LQQ45_04160 PF01807 CHC2 zinc finger LQQ45_04160 PF08275 DNA primase catalytic core, N-terminal domain LQQ45_04160 PF08278 DNA primase DnaG DnaB-binding LQQ45_04160 PF10410 DnaB-helicase binding domain of primase LQQ45_04165 PF13525 Outer membrane lipoprotein LQQ45_04170 PF01479 S4 domain LQQ45_04170 PF00849 RNA pseudouridylate synthase LQQ45_04175 PF02578 Multi-copper polyphenol oxidoreductase laccase LQQ45_04180 PF03358 NADPH-dependent FMN reductase LQQ45_04185 PF01668 SmpB protein LQQ45_04190 PF01467 Cytidylyltransferase-like LQQ45_04195 PF00037 4Fe-4S binding domain LQQ45_04215 PF03466 LysR substrate binding domain LQQ45_04215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_04220 PF00180 Isocitrate/isopropylmalate dehydrogenase LQQ45_04225 PF02028 BCCT, betaine/carnitine/choline family transporter LQQ45_04230 PF07859 alpha/beta hydrolase fold LQQ45_04235 PF00355 Rieske [2Fe-2S] domain LQQ45_04235 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LQQ45_04240 PF00171 Aldehyde dehydrogenase family LQQ45_04245 PF00970 Oxidoreductase FAD-binding domain LQQ45_04245 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_04245 PF00175 Oxidoreductase NAD-binding domain LQQ45_04260 PF02540 NAD synthase LQQ45_04260 PF00795 Carbon-nitrogen hydrolase LQQ45_04270 PF05726 Pirin C-terminal cupin domain LQQ45_04270 PF02678 Pirin LQQ45_04275 PF03653 Uncharacterised protein family (UPF0093) LQQ45_04280 PF02801 Beta-ketoacyl synthase, C-terminal domain LQQ45_04280 PF00109 Beta-ketoacyl synthase, N-terminal domain LQQ45_04290 PF00164 Ribosomal protein S12/S23 LQQ45_04295 PF00177 Ribosomal protein S7p/S5e LQQ45_04300 PF03144 Elongation factor Tu domain 2 LQQ45_04300 PF00009 Elongation factor Tu GTP binding domain LQQ45_04300 PF03764 Elongation factor G, domain IV LQQ45_04300 PF00679 Elongation factor G C-terminus LQQ45_04300 PF14492 Elongation Factor G, domain II LQQ45_04305 PF00009 Elongation factor Tu GTP binding domain LQQ45_04305 PF03144 Elongation factor Tu domain 2 LQQ45_04305 PF03143 Elongation factor Tu C-terminal domain LQQ45_04320 PF00583 Acetyltransferase (GNAT) family LQQ45_04325 PF04376 Arginine-tRNA-protein transferase, N terminus LQQ45_04325 PF04377 Arginine-tRNA-protein transferase, C terminus LQQ45_04330 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LQQ45_04335 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_04340 PF09397 Ftsk gamma domain LQQ45_04340 PF17854 FtsK alpha domain LQQ45_04340 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LQQ45_04340 PF01580 FtsK/SpoIIIE family LQQ45_04345 PF01810 LysE type translocator LQQ45_04355 PF03776 Septum formation topological specificity factor MinE LQQ45_04360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LQQ45_04365 PF03775 Septum formation inhibitor MinC, C-terminal domain LQQ45_04375 PF01553 Acyltransferase LQQ45_04380 PF13488 Glycine zipper LQQ45_04380 PF00691 OmpA family LQQ45_04385 PF13361 UvrD-like helicase C-terminal domain LQQ45_04385 PF00580 UvrD/REP helicase N-terminal domain LQQ45_04390 PF00692 dUTPase LQQ45_04395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LQQ45_04395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LQQ45_04395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LQQ45_04395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LQQ45_04400 PF00696 Amino acid kinase family LQQ45_04410 PF13230 Glutamine amidotransferases class-II LQQ45_04415 PF01814 Hemerythrin HHE cation binding domain LQQ45_04425 PF03658 RnfH family Ubiquitin LQQ45_04430 PF04355 SmpA / OmlA family LQQ45_04435 PF01475 Ferric uptake regulator family LQQ45_04440 PF00437 Type II/IV secretion system protein LQQ45_04445 PF00437 Type II/IV secretion system protein LQQ45_04450 PF01168 Alanine racemase, N-terminal domain LQQ45_04460 PF00149 Calcineurin-like phosphoesterase LQQ45_04460 PF12320 Type 5 capsule protein repressor C-terminal domain LQQ45_04480 PF08338 Domain of unknown function (DUF1731) LQQ45_04480 PF01370 NAD dependent epimerase/dehydratase family LQQ45_04485 PF01266 FAD dependent oxidoreductase LQQ45_04490 PF00490 Delta-aminolevulinic acid dehydratase LQQ45_04495 PF03061 Thioesterase superfamily LQQ45_04500 PF13533 Biotin-lipoyl like LQQ45_04505 PF07690 Major Facilitator Superfamily LQQ45_04525 PF00665 Integrase core domain LQQ45_04565 PF01636 Phosphotransferase enzyme family LQQ45_04590 PF01636 Phosphotransferase enzyme family LQQ45_04615 PF01636 Phosphotransferase enzyme family LQQ45_04640 PF01636 Phosphotransferase enzyme family LQQ45_04665 PF01636 Phosphotransferase enzyme family LQQ45_04690 PF01636 Phosphotransferase enzyme family LQQ45_04715 PF01636 Phosphotransferase enzyme family LQQ45_04740 PF01636 Phosphotransferase enzyme family LQQ45_04765 PF01636 Phosphotransferase enzyme family LQQ45_04790 PF01636 Phosphotransferase enzyme family LQQ45_04815 PF01636 Phosphotransferase enzyme family LQQ45_04840 PF01636 Phosphotransferase enzyme family LQQ45_04865 PF01636 Phosphotransferase enzyme family LQQ45_04890 PF01636 Phosphotransferase enzyme family LQQ45_04915 PF01636 Phosphotransferase enzyme family LQQ45_04940 PF01636 Phosphotransferase enzyme family LQQ45_04965 PF01636 Phosphotransferase enzyme family LQQ45_04990 PF01636 Phosphotransferase enzyme family LQQ45_05015 PF01636 Phosphotransferase enzyme family LQQ45_05040 PF01636 Phosphotransferase enzyme family LQQ45_05065 PF01636 Phosphotransferase enzyme family LQQ45_05090 PF01636 Phosphotransferase enzyme family LQQ45_05115 PF01636 Phosphotransferase enzyme family LQQ45_05140 PF01636 Phosphotransferase enzyme family LQQ45_05165 PF01636 Phosphotransferase enzyme family LQQ45_05190 PF01636 Phosphotransferase enzyme family LQQ45_05215 PF01636 Phosphotransferase enzyme family LQQ45_05240 PF01636 Phosphotransferase enzyme family LQQ45_05265 PF01636 Phosphotransferase enzyme family LQQ45_05290 PF01636 Phosphotransferase enzyme family LQQ45_05315 PF01636 Phosphotransferase enzyme family LQQ45_05340 PF01636 Phosphotransferase enzyme family LQQ45_05365 PF01636 Phosphotransferase enzyme family LQQ45_05390 PF01636 Phosphotransferase enzyme family LQQ45_05415 PF01636 Phosphotransferase enzyme family LQQ45_05440 PF01636 Phosphotransferase enzyme family LQQ45_05465 PF01636 Phosphotransferase enzyme family LQQ45_05490 PF01636 Phosphotransferase enzyme family LQQ45_05515 PF01636 Phosphotransferase enzyme family LQQ45_05540 PF01636 Phosphotransferase enzyme family LQQ45_05565 PF01636 Phosphotransferase enzyme family LQQ45_05590 PF01636 Phosphotransferase enzyme family LQQ45_05615 PF01636 Phosphotransferase enzyme family LQQ45_05640 PF01636 Phosphotransferase enzyme family LQQ45_05665 PF01636 Phosphotransferase enzyme family LQQ45_05690 PF01636 Phosphotransferase enzyme family LQQ45_05715 PF01636 Phosphotransferase enzyme family LQQ45_05740 PF01636 Phosphotransferase enzyme family LQQ45_05765 PF01636 Phosphotransferase enzyme family LQQ45_05790 PF01636 Phosphotransferase enzyme family LQQ45_05815 PF01636 Phosphotransferase enzyme family LQQ45_05840 PF01636 Phosphotransferase enzyme family LQQ45_05865 PF01636 Phosphotransferase enzyme family LQQ45_05890 PF01636 Phosphotransferase enzyme family LQQ45_05915 PF01636 Phosphotransferase enzyme family LQQ45_05940 PF01636 Phosphotransferase enzyme family LQQ45_05965 PF01636 Phosphotransferase enzyme family LQQ45_05990 PF01636 Phosphotransferase enzyme family LQQ45_06015 PF01636 Phosphotransferase enzyme family LQQ45_06040 PF01636 Phosphotransferase enzyme family LQQ45_06065 PF01636 Phosphotransferase enzyme family LQQ45_06090 PF01636 Phosphotransferase enzyme family LQQ45_06115 PF01636 Phosphotransferase enzyme family LQQ45_06140 PF01636 Phosphotransferase enzyme family LQQ45_06165 PF01636 Phosphotransferase enzyme family LQQ45_06190 PF01636 Phosphotransferase enzyme family LQQ45_06215 PF01636 Phosphotransferase enzyme family LQQ45_06240 PF01636 Phosphotransferase enzyme family LQQ45_06265 PF01636 Phosphotransferase enzyme family LQQ45_06290 PF01636 Phosphotransferase enzyme family LQQ45_06315 PF01636 Phosphotransferase enzyme family LQQ45_06340 PF01636 Phosphotransferase enzyme family LQQ45_06365 PF01636 Phosphotransferase enzyme family LQQ45_06390 PF01636 Phosphotransferase enzyme family LQQ45_06415 PF01636 Phosphotransferase enzyme family LQQ45_06440 PF00582 Universal stress protein family LQQ45_06445 PF00916 Sulfate permease family LQQ45_06445 PF01740 STAS domain LQQ45_06470 PF00905 Penicillin binding protein transpeptidase domain LQQ45_06490 PF07693 KAP family P-loop domain LQQ45_06505 PF01026 TatD related DNase LQQ45_06525 PF00083 Sugar (and other) transporter LQQ45_06530 PF00701 Dihydrodipicolinate synthetase family LQQ45_06540 PF04542 Sigma-70 region 2 LQQ45_06540 PF08281 Sigma-70, region 4 LQQ45_06550 PF07715 TonB-dependent Receptor Plug Domain LQQ45_06550 PF00593 TonB dependent receptor LQQ45_06560 PF04575 Protein of unknown function (DUF560) LQQ45_06570 PF01126 Heme oxygenase LQQ45_06595 PF13520 Amino acid permease LQQ45_06600 PF02574 Homocysteine S-methyltransferase LQQ45_06610 PF06039 Malate:quinone oxidoreductase (Mqo) LQQ45_06615 PF05199 GMC oxidoreductase LQQ45_06615 PF00732 GMC oxidoreductase LQQ45_06620 PF00171 Aldehyde dehydrogenase family LQQ45_06625 PF00440 Bacterial regulatory proteins, tetR family LQQ45_06625 PF13977 BetI-type transcriptional repressor, C-terminal LQQ45_06630 PF02028 BCCT, betaine/carnitine/choline family transporter LQQ45_06635 PF02028 BCCT, betaine/carnitine/choline family transporter LQQ45_06645 PF03061 Thioesterase superfamily LQQ45_06655 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQQ45_06655 PF07683 Cobalamin synthesis protein cobW C-terminal domain LQQ45_06660 PF00375 Sodium:dicarboxylate symporter family LQQ45_06665 PF07152 YaeQ protein LQQ45_06670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQQ45_06675 PF01522 Polysaccharide deacetylase LQQ45_06675 PF14883 Hypothetical glycosyl hydrolase family 13 LQQ45_06680 PF00535 Glycosyl transferase family 2 LQQ45_06690 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_06705 PF09339 IclR helix-turn-helix domain LQQ45_06705 PF01614 Bacterial transcriptional regulator LQQ45_06710 PF00355 Rieske [2Fe-2S] domain LQQ45_06720 PF00355 Rieske [2Fe-2S] domain LQQ45_06730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LQQ45_06735 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_06735 PF14759 Reductase C-terminal LQQ45_06740 PF07690 Major Facilitator Superfamily LQQ45_06750 PF12697 Alpha/beta hydrolase family LQQ45_06760 PF01958 Domain of unknown function DUF108 LQQ45_06760 PF03447 Homoserine dehydrogenase, NAD binding domain LQQ45_06765 PF00171 Aldehyde dehydrogenase family LQQ45_06770 PF00205 Thiamine pyrophosphate enzyme, central domain LQQ45_06770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQQ45_06770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQQ45_06780 PF07690 Major Facilitator Superfamily LQQ45_06785 PF01327 Polypeptide deformylase LQQ45_06790 PF04960 Glutaminase LQQ45_06795 PF02311 AraC-like ligand binding domain LQQ45_06795 PF12833 Helix-turn-helix domain LQQ45_06800 PF07690 Major Facilitator Superfamily LQQ45_06805 PF01263 Aldose 1-epimerase LQQ45_06815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_06815 PF03466 LysR substrate binding domain LQQ45_06825 PF07690 Major Facilitator Superfamily LQQ45_06830 PF00456 Transketolase, thiamine diphosphate binding domain LQQ45_06835 PF02779 Transketolase, pyrimidine binding domain LQQ45_06835 PF02780 Transketolase, C-terminal domain LQQ45_06840 PF02310 B12 binding domain LQQ45_06840 PF02607 B12 binding domain LQQ45_06840 PF00809 Pterin binding enzyme LQQ45_06840 PF02574 Homocysteine S-methyltransferase LQQ45_06840 PF02965 Vitamin B12 dependent methionine synthase, activation domain LQQ45_06845 PF01384 Phosphate transporter family LQQ45_06850 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_06865 PF03781 Sulfatase-modifying factor enzyme 1 LQQ45_06870 PF00884 Sulfatase LQQ45_06880 PF01106 NifU-like domain LQQ45_06880 PF01521 Iron-sulphur cluster biosynthesis LQQ45_06885 PF07715 TonB-dependent Receptor Plug Domain LQQ45_06885 PF00593 TonB dependent receptor LQQ45_06895 PF00561 alpha/beta hydrolase fold LQQ45_06900 PF00484 Carbonic anhydrase LQQ45_06905 PF13472 GDSL-like Lipase/Acylhydrolase family LQQ45_06910 PF00005 ABC transporter LQQ45_06920 PF01694 Rhomboid family LQQ45_06925 PF00912 Transglycosylase LQQ45_06930 PF02503 Polyphosphate kinase middle domain LQQ45_06930 PF13090 Polyphosphate kinase C-terminal domain 2 LQQ45_06930 PF17941 Polyphosphate kinase C-terminal domain 1 LQQ45_06930 PF13089 Polyphosphate kinase N-terminal domain LQQ45_06945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_06945 PF03466 LysR substrate binding domain LQQ45_06950 PF00561 alpha/beta hydrolase fold LQQ45_06955 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_06955 PF18113 Rubredoxin binding C-terminal domain LQQ45_06960 PF00301 Rubredoxin LQQ45_06975 PF00152 tRNA synthetases class II (D, K and N) LQQ45_06975 PF01336 OB-fold nucleic acid binding domain LQQ45_06980 PF14052 Capsule assembly protein Wzi LQQ45_06990 PF01507 Phosphoadenosine phosphosulfate reductase family LQQ45_06995 PF00009 Elongation factor Tu GTP binding domain LQQ45_07010 PF03600 Citrate transporter LQQ45_07015 PF01595 Cyclin M transmembrane N-terminal domain LQQ45_07015 PF03471 Transporter associated domain LQQ45_07015 PF00571 CBS domain LQQ45_07020 PF03466 LysR substrate binding domain LQQ45_07020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_07025 PF00463 Isocitrate lyase family LQQ45_07040 PF01774 UreD urease accessory protein LQQ45_07045 PF00547 Urease, gamma subunit LQQ45_07050 PF00699 Urease beta subunit LQQ45_07055 PF01979 Amidohydrolase family LQQ45_07055 PF00449 Urease alpha-subunit, N-terminal domain LQQ45_07060 PF05194 UreE urease accessory protein, C-terminal domain LQQ45_07060 PF02814 UreE urease accessory protein, N-terminal domain LQQ45_07065 PF01730 UreF LQQ45_07070 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQQ45_07085 PF03717 Penicillin-binding Protein dimerisation domain LQQ45_07085 PF00905 Penicillin binding protein transpeptidase domain LQQ45_07100 PF05191 Adenylate kinase, active site lid LQQ45_07110 PF10576 Iron-sulfur binding domain of endonuclease III LQQ45_07110 PF00633 Helix-hairpin-helix motif LQQ45_07110 PF00730 HhH-GPD superfamily base excision DNA repair protein LQQ45_07115 PF04060 Putative Fe-S cluster LQQ45_07120 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LQQ45_07120 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LQQ45_07130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LQQ45_07135 PF02590 Predicted SPOUT methyltransferase LQQ45_07140 PF00004 ATPase family associated with various cellular activities (AAA) LQQ45_07140 PF05362 Lon protease (S16) C-terminal proteolytic domain LQQ45_07140 PF02190 ATP-dependent protease La (LON) substrate-binding domain LQQ45_07150 PF01812 5-formyltetrahydrofolate cyclo-ligase family LQQ45_07235 PF01381 Helix-turn-helix LQQ45_07445 PF08346 AntA/AntB antirepressor LQQ45_07445 PF10548 P22AR C-terminal domain LQQ45_07465 PF01476 LysM domain LQQ45_07465 PF08525 Opacity-associated protein A N-terminal motif LQQ45_07465 PF01551 Peptidase family M23 LQQ45_07520 PF00313 'Cold-shock' DNA-binding domain LQQ45_07560 PF05195 Aminopeptidase P, N-terminal domain LQQ45_07560 PF00557 Metallopeptidase family M24 LQQ45_07565 PF01494 FAD binding domain LQQ45_07570 PF01494 FAD binding domain LQQ45_07580 PF13411 MerR HTH family regulatory protein LQQ45_07590 PF01810 LysE type translocator LQQ45_07595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_07595 PF03466 LysR substrate binding domain LQQ45_07605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQQ45_07610 PF02021 Uncharacterised protein family UPF0102 LQQ45_07615 PF04972 BON domain LQQ45_07625 PF09297 NADH pyrophosphatase zinc ribbon domain LQQ45_07625 PF00293 NUDIX domain LQQ45_07635 PF00929 Exonuclease LQQ45_07640 PF01476 LysM domain LQQ45_07640 PF01464 Transglycosylase SLT domain LQQ45_07640 PF01476 LysM domain LQQ45_07640 PF01464 Transglycosylase SLT domain LQQ45_07645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LQQ45_07650 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_07655 PF12911 N-terminal TM domain of oligopeptide transport permease C LQQ45_07655 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_07660 PF00005 ABC transporter LQQ45_07660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LQQ45_07665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQQ45_07665 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_07705 PF07715 TonB-dependent Receptor Plug Domain LQQ45_07705 PF00593 TonB dependent receptor LQQ45_07715 PF00929 Exonuclease LQQ45_07720 PF01979 Amidohydrolase family LQQ45_07725 PF00563 EAL domain LQQ45_07725 PF01590 GAF domain LQQ45_07725 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_07725 PF00360 Phytochrome region LQQ45_07730 PF00764 Arginosuccinate synthase LQQ45_07735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQQ45_07735 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_07745 PF13356 Arm DNA-binding domain LQQ45_07745 PF00589 Phage integrase family LQQ45_07815 PF05656 Protein of unknown function (DUF805) LQQ45_07840 PF02661 Fic/DOC family LQQ45_07850 PF02384 N-6 DNA Methylase LQQ45_07855 PF01420 Type I restriction modification DNA specificity domain LQQ45_07890 PF00176 SNF2 family N-terminal domain LQQ45_07890 PF12419 SNF2 Helicase protein LQQ45_07890 PF00271 Helicase conserved C-terminal domain LQQ45_07905 PF03180 NLPA lipoprotein LQQ45_07925 PF03527 RHS protein LQQ45_07925 PF05593 RHS Repeat LQQ45_07960 PF00324 Amino acid permease LQQ45_07965 PF01266 FAD dependent oxidoreductase LQQ45_07980 PF07729 FCD domain LQQ45_07980 PF00392 Bacterial regulatory proteins, gntR family LQQ45_07990 PF00171 Aldehyde dehydrogenase family LQQ45_08000 PF00202 Aminotransferase class-III LQQ45_08005 PF04958 Arginine N-succinyltransferase beta subunit LQQ45_08010 PF00324 Amino acid permease LQQ45_08030 PF00171 Aldehyde dehydrogenase family LQQ45_08035 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LQQ45_08035 PF12833 Helix-turn-helix domain LQQ45_08040 PF00892 EamA-like transporter family LQQ45_08045 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LQQ45_08045 PF08666 SAF domain LQQ45_08050 PF07690 Major Facilitator Superfamily LQQ45_08055 PF13378 Enolase C-terminal domain-like LQQ45_08060 PF00701 Dihydrodipicolinate synthetase family LQQ45_08065 PF00171 Aldehyde dehydrogenase family LQQ45_08070 PF00392 Bacterial regulatory proteins, gntR family LQQ45_08070 PF07729 FCD domain LQQ45_08075 PF07519 Tannase and feruloyl esterase LQQ45_08090 PF03573 outer membrane porin, OprD family LQQ45_08095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_08095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_08095 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_08105 PF00171 Aldehyde dehydrogenase family LQQ45_08110 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_08115 PF07690 Major Facilitator Superfamily LQQ45_08130 PF00175 Oxidoreductase NAD-binding domain LQQ45_08130 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_08135 PF00355 Rieske [2Fe-2S] domain LQQ45_08140 PF07690 Major Facilitator Superfamily LQQ45_08145 PF03573 outer membrane porin, OprD family LQQ45_08150 PF05199 GMC oxidoreductase LQQ45_08155 PF07859 alpha/beta hydrolase fold LQQ45_08160 PF00106 short chain dehydrogenase LQQ45_08165 PF00743 Flavin-binding monooxygenase-like LQQ45_08170 PF12833 Helix-turn-helix domain LQQ45_08170 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LQQ45_08175 PF04072 Leucine carboxyl methyltransferase LQQ45_08180 PF00743 Flavin-binding monooxygenase-like LQQ45_08185 PF00106 short chain dehydrogenase LQQ45_08210 PF17954 Quercetinase C-terminal cupin domain LQQ45_08210 PF02678 Pirin LQQ45_08220 PF00106 short chain dehydrogenase LQQ45_08220 PF00561 alpha/beta hydrolase fold LQQ45_08225 PF00743 Flavin-binding monooxygenase-like LQQ45_08235 PF00860 Permease family LQQ45_08240 PF00962 Adenosine/AMP deaminase LQQ45_08245 PF01292 Prokaryotic cytochrome b561 LQQ45_08255 PF01351 Ribonuclease HII LQQ45_08260 PF02599 Global regulator protein family LQQ45_08265 PF00696 Amino acid kinase family LQQ45_08265 PF13840 ACT domain LQQ45_08265 PF01842 ACT domain LQQ45_08270 PF01411 tRNA synthetases class II (A) LQQ45_08270 PF02272 DHHA1 domain LQQ45_08270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LQQ45_08275 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LQQ45_08275 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LQQ45_08280 PF13393 Histidyl-tRNA synthetase LQQ45_08285 PF00709 Adenylosuccinate synthetase LQQ45_08300 PF00248 Aldo/keto reductase family LQQ45_08305 PF00027 Cyclic nucleotide-binding domain LQQ45_08305 PF13545 Crp-like helix-turn-helix domain LQQ45_08315 PF02566 OsmC-like protein LQQ45_08330 PF10431 C-terminal, D2-small domain, of ClpB protein LQQ45_08330 PF02861 Clp amino terminal domain, pathogenicity island component LQQ45_08330 PF17871 AAA lid domain LQQ45_08330 PF00004 ATPase family associated with various cellular activities (AAA) LQQ45_08330 PF07724 AAA domain (Cdc48 subfamily) LQQ45_08345 PF01170 Putative RNA methylase family UPF0020 LQQ45_08345 PF10672 S-adenosylmethionine-dependent methyltransferase LQQ45_08345 PF02926 THUMP domain LQQ45_08355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LQQ45_08355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LQQ45_08360 PF01979 Amidohydrolase family LQQ45_08365 PF00691 OmpA family LQQ45_08365 PF13488 Glycine zipper LQQ45_08375 PF00043 Glutathione S-transferase, C-terminal domain LQQ45_08375 PF13417 Glutathione S-transferase, N-terminal domain LQQ45_08380 PF02390 Putative methyltransferase LQQ45_08390 PF00043 Glutathione S-transferase, C-terminal domain LQQ45_08390 PF02798 Glutathione S-transferase, N-terminal domain LQQ45_08400 PF13192 Thioredoxin domain LQQ45_08400 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_08420 PF00578 AhpC/TSA family LQQ45_08420 PF10417 C-terminal domain of 1-Cys peroxiredoxin LQQ45_08425 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LQQ45_08425 PF00271 Helicase conserved C-terminal domain LQQ45_08425 PF04408 Helicase associated domain (HA2) LQQ45_08425 PF11898 Domain of unknown function (DUF3418) LQQ45_08425 PF00270 DEAD/DEAH box helicase LQQ45_08430 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LQQ45_08430 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LQQ45_08440 PF07690 Major Facilitator Superfamily LQQ45_08445 PF03594 Benzoate membrane transport protein LQQ45_08450 PF00106 short chain dehydrogenase LQQ45_08455 PF00970 Oxidoreductase FAD-binding domain LQQ45_08455 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_08455 PF00175 Oxidoreductase NAD-binding domain LQQ45_08465 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LQQ45_08465 PF00355 Rieske [2Fe-2S] domain LQQ45_08475 PF03466 LysR substrate binding domain LQQ45_08475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_08485 PF00403 Heavy-metal-associated domain LQQ45_08490 PF09278 MerR, DNA binding LQQ45_08490 PF00376 MerR family regulatory protein LQQ45_08525 PF13742 OB-fold nucleic acid binding domain LQQ45_08525 PF02601 Exonuclease VII, large subunit LQQ45_08555 PF01810 LysE type translocator LQQ45_08560 PF00313 'Cold-shock' DNA-binding domain LQQ45_08570 PF14748 Pyrroline-5-carboxylate reductase dimerisation LQQ45_08570 PF03807 NADP oxidoreductase coenzyme F420-dependent LQQ45_08595 PF07690 Major Facilitator Superfamily LQQ45_08600 PF01638 HxlR-like helix-turn-helix LQQ45_08670 PF06381 Protein of unknown function (DUF1073) LQQ45_08690 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) LQQ45_08705 PF12708 Pectate lyase superfamily protein LQQ45_08705 PF13229 Right handed beta helix region LQQ45_08740 PF00589 Phage integrase family LQQ45_08755 PF01406 tRNA synthetases class I (C) catalytic domain LQQ45_08755 PF09190 DALR domain LQQ45_08760 PF00571 CBS domain LQQ45_08760 PF01380 SIS domain LQQ45_08775 PF03968 OstA-like protein LQQ45_08780 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQQ45_08780 PF00005 ABC transporter LQQ45_08785 PF02321 Outer membrane efflux protein LQQ45_08790 PF00005 ABC transporter LQQ45_08790 PF00664 ABC transporter transmembrane region LQQ45_08790 PF03412 Peptidase C39 family LQQ45_08800 PF01205 Uncharacterized protein family UPF0029 LQQ45_08805 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_08815 PF01596 O-methyltransferase LQQ45_08825 PF00037 4Fe-4S binding domain LQQ45_08825 PF11953 Domain of unknown function (DUF3470) LQQ45_08835 PF05188 MutS domain II LQQ45_08835 PF05192 MutS domain III LQQ45_08835 PF05190 MutS family domain IV LQQ45_08835 PF00488 MutS domain V LQQ45_08835 PF01624 MutS domain I LQQ45_08840 PF01037 Lrp/AsnC ligand binding domain LQQ45_08845 PF00892 EamA-like transporter family LQQ45_08855 PF03279 Bacterial lipid A biosynthesis acyltransferase LQQ45_08870 PF07690 Major Facilitator Superfamily LQQ45_08890 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQQ45_08890 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQQ45_08915 PF13296 Putative type VI secretion system Rhs element Vgr LQQ45_08915 PF04717 Type VI secretion system, phage-baseplate injector LQQ45_08915 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LQQ45_08920 PF05593 RHS Repeat LQQ45_08920 PF03527 RHS protein LQQ45_08935 PF05593 RHS Repeat LQQ45_08935 PF03527 RHS protein LQQ45_08955 PF03466 LysR substrate binding domain LQQ45_08955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_08960 PF01566 Natural resistance-associated macrophage protein LQQ45_08965 PF03746 LamB/YcsF family LQQ45_08970 PF07286 Protein of unknown function (DUF1445) LQQ45_08980 PF00364 Biotin-requiring enzyme LQQ45_08980 PF02785 Biotin carboxylase C-terminal domain LQQ45_08980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQQ45_08980 PF00289 Biotin carboxylase, N-terminal domain LQQ45_08985 PF00654 Voltage gated chloride channel LQQ45_09010 PF00440 Bacterial regulatory proteins, tetR family LQQ45_09020 PF08240 Alcohol dehydrogenase GroES-like domain LQQ45_09020 PF13823 Alcohol dehydrogenase GroES-associated LQQ45_09020 PF00107 Zinc-binding dehydrogenase LQQ45_09035 PF02785 Biotin carboxylase C-terminal domain LQQ45_09035 PF00289 Biotin carboxylase, N-terminal domain LQQ45_09035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQQ45_09040 PF02525 Flavodoxin-like fold LQQ45_09045 PF01638 HxlR-like helix-turn-helix LQQ45_09055 PF01402 Ribbon-helix-helix protein, copG family LQQ45_09055 PF08753 NikR C terminal nickel binding domain LQQ45_09060 PF01425 Amidase LQQ45_09065 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQQ45_09070 PF00005 ABC transporter LQQ45_09110 PF05947 Type VI secretion system, TssF LQQ45_09135 PF06761 Intracellular multiplication and human macrophage-killing LQQ45_09135 PF14331 ImcF-related N-terminal domain LQQ45_09135 PF06744 Type VI secretion protein IcmF C-terminal LQQ45_09145 PF00691 OmpA family LQQ45_09145 PF01389 OmpA-like transmembrane domain LQQ45_09160 PF07724 AAA domain (Cdc48 subfamily) LQQ45_09160 PF10431 C-terminal, D2-small domain, of ClpB protein LQQ45_09160 PF00004 ATPase family associated with various cellular activities (AAA) LQQ45_09160 PF17871 AAA lid domain LQQ45_09165 PF06812 ImpA, N-terminal, type VI secretion system LQQ45_09170 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LQQ45_09190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_09190 PF03466 LysR substrate binding domain LQQ45_09200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQQ45_09205 PF07690 Major Facilitator Superfamily LQQ45_09220 PF02677 Epoxyqueuosine reductase QueH LQQ45_09230 PF00376 MerR family regulatory protein LQQ45_09230 PF09278 MerR, DNA binding LQQ45_09240 PF00701 Dihydrodipicolinate synthetase family LQQ45_09250 PF00392 Bacterial regulatory proteins, gntR family LQQ45_09255 PF05544 Proline racemase LQQ45_09260 PF01266 FAD dependent oxidoreductase LQQ45_09270 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_09270 PF04324 BFD-like [2Fe-2S] binding domain LQQ45_09280 PF00083 Sugar (and other) transporter LQQ45_09285 PF00171 Aldehyde dehydrogenase family LQQ45_09290 PF13520 Amino acid permease LQQ45_09295 PF03313 Serine dehydratase alpha chain LQQ45_09295 PF03315 Serine dehydratase beta chain LQQ45_09300 PF00171 Aldehyde dehydrogenase family LQQ45_09300 PF01575 MaoC like domain LQQ45_09305 PF05138 Phenylacetic acid catabolic protein LQQ45_09310 PF06243 Phenylacetic acid degradation B LQQ45_09315 PF05138 Phenylacetic acid catabolic protein LQQ45_09320 PF01883 Iron-sulfur cluster assembly protein LQQ45_09325 PF00970 Oxidoreductase FAD-binding domain LQQ45_09325 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_09325 PF00175 Oxidoreductase NAD-binding domain LQQ45_09330 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_09335 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_09340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQQ45_09340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQQ45_09340 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LQQ45_09345 PF02803 Thiolase, C-terminal domain LQQ45_09345 PF00108 Thiolase, N-terminal domain LQQ45_09350 PF14535 AMP-binding enzyme C-terminal domain LQQ45_09350 PF00501 AMP-binding enzyme LQQ45_09355 PF08223 PaaX-like protein C-terminal domain LQQ45_09355 PF07848 PaaX-like protein LQQ45_09360 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_09365 PF03061 Thioesterase superfamily LQQ45_09370 PF02463 RecF/RecN/SMC N terminal domain LQQ45_09375 PF13361 UvrD-like helicase C-terminal domain LQQ45_09375 PF00580 UvrD/REP helicase N-terminal domain LQQ45_09410 PF00313 'Cold-shock' DNA-binding domain LQQ45_09440 PF02515 CoA-transferase family III LQQ45_09445 PF00682 HMGL-like LQQ45_09450 PF07690 Major Facilitator Superfamily LQQ45_09455 PF00199 Catalase LQQ45_09460 PF01292 Prokaryotic cytochrome b561 LQQ45_09480 PF12697 Alpha/beta hydrolase family LQQ45_09485 PF01613 Flavin reductase like domain LQQ45_09490 PF00296 Luciferase-like monooxygenase LQQ45_09495 PF00171 Aldehyde dehydrogenase family LQQ45_09505 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LQQ45_09515 PF00171 Aldehyde dehydrogenase family LQQ45_09520 PF02627 Carboxymuconolactone decarboxylase family LQQ45_09525 PF03466 LysR substrate binding domain LQQ45_09525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_09530 PF02525 Flavodoxin-like fold LQQ45_09535 PF01614 Bacterial transcriptional regulator LQQ45_09535 PF09339 IclR helix-turn-helix domain LQQ45_09540 PF01494 FAD binding domain LQQ45_09545 PF07702 UTRA domain LQQ45_09545 PF00392 Bacterial regulatory proteins, gntR family LQQ45_09555 PF08402 TOBE domain LQQ45_09555 PF00005 ABC transporter LQQ45_09560 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_09565 PF01266 FAD dependent oxidoreductase LQQ45_09570 PF00266 Aminotransferase class-V LQQ45_09575 PF13419 Haloacid dehalogenase-like hydrolase LQQ45_09580 PF07690 Major Facilitator Superfamily LQQ45_09585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_09585 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_09585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_09590 PF02515 CoA-transferase family III LQQ45_09595 PF09339 IclR helix-turn-helix domain LQQ45_09600 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_09605 PF03060 Nitronate monooxygenase LQQ45_09610 PF07690 Major Facilitator Superfamily LQQ45_09615 PF09339 IclR helix-turn-helix domain LQQ45_09620 PF02803 Thiolase, C-terminal domain LQQ45_09620 PF00108 Thiolase, N-terminal domain LQQ45_09625 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQQ45_09625 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LQQ45_09625 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQQ45_09635 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_09640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_09640 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_09640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_09645 PF07690 Major Facilitator Superfamily LQQ45_09650 PF01144 Coenzyme A transferase LQQ45_09655 PF01144 Coenzyme A transferase LQQ45_09665 PF07690 Major Facilitator Superfamily LQQ45_09675 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_09675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_09675 PF12806 Acetyl-CoA dehydrogenase C-terminal like LQQ45_09675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_09690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_09690 PF03466 LysR substrate binding domain LQQ45_09695 PF00682 HMGL-like LQQ45_09700 PF18140 Propionyl-coenzyme A carboxylase BT domain LQQ45_09700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQQ45_09700 PF00364 Biotin-requiring enzyme LQQ45_09700 PF00289 Biotin carboxylase, N-terminal domain LQQ45_09700 PF02785 Biotin carboxylase C-terminal domain LQQ45_09705 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_09710 PF01039 Carboxyl transferase domain LQQ45_09715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_09715 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_09715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_09720 PF00440 Bacterial regulatory proteins, tetR family LQQ45_09725 PF00501 AMP-binding enzyme LQQ45_09725 PF13193 AMP-binding enzyme C-terminal domain LQQ45_09745 PF03466 LysR substrate binding domain LQQ45_09745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_09780 PF02464 Competence-damaged protein LQQ45_09780 PF18146 Damage-inducible protein CinA KH domain LQQ45_09780 PF00994 Probable molybdopterin binding domain LQQ45_09790 PF06628 Catalase-related immune-responsive LQQ45_09790 PF00199 Catalase LQQ45_09790 PF18011 C-terminal domain found in long catalases LQQ45_09820 PF00717 Peptidase S24-like LQQ45_09830 PF01037 Lrp/AsnC ligand binding domain LQQ45_09830 PF13404 AsnC-type helix-turn-helix domain LQQ45_09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_09840 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_09840 PF09308 LuxQ, periplasmic LQQ45_09840 PF00072 Response regulator receiver domain LQQ45_09845 PF00072 Response regulator receiver domain LQQ45_09860 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_09865 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_09870 PF00005 ABC transporter LQQ45_09875 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQQ45_09880 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQQ45_09890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_09890 PF03466 LysR substrate binding domain LQQ45_09895 PF01810 LysE type translocator LQQ45_09905 PF00266 Aminotransferase class-V LQQ45_09915 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_09920 PF00581 Rhodanese-like domain LQQ45_09930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_09930 PF03466 LysR substrate binding domain LQQ45_09935 PF02798 Glutathione S-transferase, N-terminal domain LQQ45_09940 PF14834 Glutathione S-transferase, C-terminal domain LQQ45_09940 PF02798 Glutathione S-transferase, N-terminal domain LQQ45_09945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_09945 PF03466 LysR substrate binding domain LQQ45_09950 PF03788 LrgA family LQQ45_09955 PF04172 LrgB-like family LQQ45_09960 PF00392 Bacterial regulatory proteins, gntR family LQQ45_09975 PF07690 Major Facilitator Superfamily LQQ45_09980 PF16957 Malonate decarboxylase, alpha subunit, transporter LQQ45_09985 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LQQ45_09990 PF06857 Malonate decarboxylase delta subunit (MdcD) LQQ45_09995 PF01039 Carboxyl transferase domain LQQ45_10005 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG LQQ45_10010 PF00698 Acyl transferase domain LQQ45_10025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_10025 PF03466 LysR substrate binding domain LQQ45_10030 PF00155 Aminotransferase class I and II LQQ45_10030 PF00392 Bacterial regulatory proteins, gntR family LQQ45_10040 PF02322 Cytochrome bd terminal oxidase subunit II LQQ45_10045 PF01654 Cytochrome bd terminal oxidase subunit I LQQ45_10060 PF00296 Luciferase-like monooxygenase LQQ45_10065 PF00083 Sugar (and other) transporter LQQ45_10075 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LQQ45_10080 PF00005 ABC transporter LQQ45_10085 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_10090 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LQQ45_10095 PF01177 Asp/Glu/Hydantoin racemase LQQ45_10100 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LQQ45_10110 PF03466 LysR substrate binding domain LQQ45_10110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_10120 PF13382 Adenine deaminase C-terminal domain LQQ45_10120 PF01979 Amidohydrolase family LQQ45_10130 PF03960 ArsC family LQQ45_10135 PF01022 Bacterial regulatory protein, arsR family LQQ45_10140 PF01758 Sodium Bile acid symporter family LQQ45_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_10145 PF03466 LysR substrate binding domain LQQ45_10160 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_10160 PF13192 Thioredoxin domain LQQ45_10175 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_10180 PF00588 SpoU rRNA Methylase family LQQ45_10185 PF07733 Bacterial DNA polymerase III alpha NTPase domain LQQ45_10185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LQQ45_10185 PF02811 PHP domain LQQ45_10185 PF01336 OB-fold nucleic acid binding domain LQQ45_10185 PF14579 Helix-hairpin-helix motif LQQ45_10190 PF00710 Asparaginase, N-terminal LQQ45_10190 PF17763 Glutaminase/Asparaginase C-terminal domain LQQ45_10195 PF00375 Sodium:dicarboxylate symporter family LQQ45_10200 PF00155 Aminotransferase class I and II LQQ45_10205 PF01641 SelR domain LQQ45_10210 PF00255 Glutathione peroxidase LQQ45_10215 PF12833 Helix-turn-helix domain LQQ45_10215 PF12852 Cupin LQQ45_10225 PF00155 Aminotransferase class I and II LQQ45_10230 PF01966 HD domain LQQ45_10230 PF01909 Nucleotidyltransferase domain LQQ45_10230 PF08335 GlnD PII-uridylyltransferase LQQ45_10235 PF02222 ATP-grasp domain LQQ45_10245 PF05437 Branched-chain amino acid transport protein (AzlD) LQQ45_10250 PF03591 AzlC protein LQQ45_10275 PF01926 50S ribosome-binding GTPase LQQ45_10275 PF06071 Protein of unknown function (DUF933) LQQ45_10280 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_10285 PF09383 NIL domain LQQ45_10285 PF00005 ABC transporter LQQ45_10290 PF03180 NLPA lipoprotein LQQ45_10295 PF03180 NLPA lipoprotein LQQ45_10300 PF00296 Luciferase-like monooxygenase LQQ45_10310 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_10310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_10325 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_10330 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_10335 PF00005 ABC transporter LQQ45_10345 PF01037 Lrp/AsnC ligand binding domain LQQ45_10350 PF01709 Transcriptional regulator LQQ45_10360 PF00440 Bacterial regulatory proteins, tetR family LQQ45_10380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_10380 PF03466 LysR substrate binding domain LQQ45_10390 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LQQ45_10400 PF00892 EamA-like transporter family LQQ45_10420 PF13953 PapC C-terminal domain LQQ45_10420 PF13954 PapC N-terminal domain LQQ45_10420 PF00577 Outer membrane usher protein LQQ45_10425 PF02753 Pili assembly chaperone PapD, C-terminal domain LQQ45_10425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LQQ45_10430 PF16970 Type-1 fimbrial protein, A LQQ45_10445 PF04055 Radical SAM superfamily LQQ45_10445 PF06968 Biotin and Thiamin Synthesis associated domain LQQ45_10450 PF08331 Domain of unknown function (DUF1730) LQQ45_10455 PF01256 Carbohydrate kinase LQQ45_10455 PF03853 YjeF-related protein N-terminus LQQ45_10460 PF02075 Crossover junction endodeoxyribonuclease RuvC LQQ45_10475 PF00905 Penicillin binding protein transpeptidase domain LQQ45_10495 PF02772 S-adenosylmethionine synthetase, central domain LQQ45_10495 PF02773 S-adenosylmethionine synthetase, C-terminal domain LQQ45_10495 PF00438 S-adenosylmethionine synthetase, N-terminal domain LQQ45_10500 PF02779 Transketolase, pyrimidine binding domain LQQ45_10500 PF02780 Transketolase, C-terminal domain LQQ45_10500 PF00456 Transketolase, thiamine diphosphate binding domain LQQ45_10510 PF04264 YceI-like domain LQQ45_10520 PF09992 Phosphodiester glycosidase LQQ45_10530 PF05958 tRNA (Uracil-5-)-methyltransferase LQQ45_10535 PF04229 GrpB protein LQQ45_10540 PF01619 Proline dehydrogenase LQQ45_10540 PF14850 DNA-binding domain of Proline dehydrogenase LQQ45_10540 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LQQ45_10540 PF00171 Aldehyde dehydrogenase family LQQ45_10545 PF01037 Lrp/AsnC ligand binding domain LQQ45_10550 PF00474 Sodium:solute symporter family LQQ45_10555 PF02146 Sir2 family LQQ45_10560 PF01597 Glycine cleavage H-protein LQQ45_10565 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LQQ45_10565 PF12833 Helix-turn-helix domain LQQ45_10575 PF00664 ABC transporter transmembrane region LQQ45_10575 PF00005 ABC transporter LQQ45_10580 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LQQ45_10585 PF06912 Protein of unknown function (DUF1275) LQQ45_10590 PF00375 Sodium:dicarboxylate symporter family LQQ45_10605 PF08007 Cupin superfamily protein LQQ45_10610 PF02545 Maf-like protein LQQ45_10620 PF00162 Phosphoglycerate kinase LQQ45_10630 PF01116 Fructose-bisphosphate aldolase class-II LQQ45_10635 PF00639 PPIC-type PPIASE domain LQQ45_10635 PF09312 SurA N-terminal domain LQQ45_10640 PF04453 LPS transport system D LQQ45_10640 PF03968 OstA-like protein LQQ45_10645 PF01636 Phosphotransferase enzyme family LQQ45_10650 PF00483 Nucleotidyl transferase LQQ45_10655 PF02527 rRNA small subunit methyltransferase G LQQ45_10660 PF13614 AAA domain LQQ45_10665 PF02195 ParB-like nuclease domain LQQ45_10665 PF17762 HTH domain found in ParB protein LQQ45_10670 PF01618 MotA/TolQ/ExbB proton channel family LQQ45_10680 PF00664 ABC transporter transmembrane region LQQ45_10680 PF00005 ABC transporter LQQ45_10685 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LQQ45_10690 PF02348 Cytidylyltransferase LQQ45_10695 PF09115 DNA polymerase III, delta subunit, C terminal LQQ45_10705 PF01026 TatD related DNase LQQ45_10720 PF07963 Prokaryotic N-terminal methylation motif LQQ45_10720 PF02501 Type II secretion system (T2SS), protein I LQQ45_10725 PF07963 Prokaryotic N-terminal methylation motif LQQ45_10725 PF11612 Type II secretion system (T2SS), protein J LQQ45_10730 PF03934 Type II secretion system (T2SS), protein K LQQ45_10740 PF03167 Uracil DNA glycosylase superfamily LQQ45_10750 PF14437 MafB19-like deaminase LQQ45_10760 PF02224 Cytidylate kinase LQQ45_10765 PF00575 S1 RNA binding domain LQQ45_10770 PF00216 Bacterial DNA-binding protein LQQ45_10780 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LQQ45_10790 PF00743 Flavin-binding monooxygenase-like LQQ45_10800 PF03969 AFG1-like ATPase LQQ45_10805 PF01274 Malate synthase LQQ45_10815 PF02472 Biopolymer transport protein ExbD/TolR LQQ45_10820 PF02472 Biopolymer transport protein ExbD/TolR LQQ45_10825 PF01618 MotA/TolQ/ExbB proton channel family LQQ45_10830 PF03544 Gram-negative bacterial TonB protein C-terminal LQQ45_10835 PF07715 TonB-dependent Receptor Plug Domain LQQ45_10835 PF00593 TonB dependent receptor LQQ45_10850 PF01432 Peptidase family M3 LQQ45_10855 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_10860 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_10865 PF00005 ABC transporter LQQ45_10865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LQQ45_10880 PF00459 Inositol monophosphatase family LQQ45_10890 PF01649 Ribosomal protein S20 LQQ45_10895 PF13460 NAD(P)H-binding LQQ45_10900 PF03737 Aldolase/RraA LQQ45_10920 PF02559 CarD-like/TRCF domain LQQ45_10920 PF00270 DEAD/DEAH box helicase LQQ45_10920 PF00271 Helicase conserved C-terminal domain LQQ45_10920 PF03461 TRCF domain LQQ45_10920 PF17757 UvrB interaction domain LQQ45_10930 PF00211 Adenylate and Guanylate cyclase catalytic domain LQQ45_10935 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_10940 PF00012 Hsp70 protein LQQ45_10945 PF00226 DnaJ domain LQQ45_10945 PF07743 HSCB C-terminal oligomerisation domain LQQ45_10950 PF01521 Iron-sulphur cluster biosynthesis LQQ45_10955 PF01592 NifU-like N terminal domain LQQ45_10960 PF00266 Aminotransferase class-V LQQ45_10965 PF02082 Transcriptional regulator LQQ45_10980 PF00216 Bacterial DNA-binding protein LQQ45_10985 PF09312 SurA N-terminal domain LQQ45_10985 PF00639 PPIC-type PPIASE domain LQQ45_10990 PF12852 Cupin LQQ45_10990 PF12833 Helix-turn-helix domain LQQ45_10995 PF00487 Fatty acid desaturase LQQ45_11000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_11000 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_11000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_11005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_11005 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_11005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_11010 PF03109 ABC1 family LQQ45_11020 PF04073 Aminoacyl-tRNA editing domain LQQ45_11025 PF06276 Ferric iron reductase FhuF-like transporter LQQ45_11025 PF04183 IucA / IucC family LQQ45_11030 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LQQ45_11035 PF07690 Major Facilitator Superfamily LQQ45_11040 PF06276 Ferric iron reductase FhuF-like transporter LQQ45_11040 PF04183 IucA / IucC family LQQ45_11045 PF04183 IucA / IucC family LQQ45_11045 PF06276 Ferric iron reductase FhuF-like transporter LQQ45_11055 PF03737 Aldolase/RraA LQQ45_11060 PF00593 TonB dependent receptor LQQ45_11060 PF07715 TonB-dependent Receptor Plug Domain LQQ45_11085 PF13419 Haloacid dehalogenase-like hydrolase LQQ45_11095 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LQQ45_11100 PF02277 Phosphoribosyltransferase LQQ45_11105 PF00300 Histidine phosphatase superfamily (branch 1) LQQ45_11115 PF02654 Cobalamin-5-phosphate synthase LQQ45_11120 PF00793 DAHP synthetase I family LQQ45_11125 PF01925 Sulfite exporter TauE/SafE LQQ45_11145 PF07715 TonB-dependent Receptor Plug Domain LQQ45_11145 PF00593 TonB dependent receptor LQQ45_11150 PF02684 Lipid-A-disaccharide synthetase LQQ45_11175 PF01230 HIT domain LQQ45_11205 PF08241 Methyltransferase domain LQQ45_11210 PF00561 alpha/beta hydrolase fold LQQ45_11215 PF01053 Cys/Met metabolism PLP-dependent enzyme LQQ45_11225 PF02575 YbaB/EbfC DNA-binding family LQQ45_11230 PF02132 RecR protein LQQ45_11230 PF13662 Toprim domain LQQ45_11235 PF01612 3'-5' exonuclease LQQ45_11235 PF00570 HRDC domain LQQ45_11255 PF05166 YcgL domain LQQ45_11265 PF00004 ATPase family associated with various cellular activities (AAA) LQQ45_11265 PF01434 Peptidase family M41 LQQ45_11265 PF17862 AAA+ lid domain LQQ45_11275 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_11280 PF05175 Methyltransferase small domain LQQ45_11285 PF01264 Chorismate synthase LQQ45_11290 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_11290 PF08448 PAS fold LQQ45_11305 PF04055 Radical SAM superfamily LQQ45_11310 PF00676 Dehydrogenase E1 component LQQ45_11315 PF02780 Transketolase, C-terminal domain LQQ45_11315 PF02779 Transketolase, pyrimidine binding domain LQQ45_11320 PF02817 e3 binding domain LQQ45_11320 PF00364 Biotin-requiring enzyme LQQ45_11320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LQQ45_11325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LQQ45_11325 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_11330 PF00106 short chain dehydrogenase LQQ45_11335 PF00107 Zinc-binding dehydrogenase LQQ45_11335 PF08240 Alcohol dehydrogenase GroES-like domain LQQ45_11340 PF01062 Bestrophin, RFP-TM, chloride channel LQQ45_11345 PF00158 Sigma-54 interaction domain LQQ45_11345 PF00072 Response regulator receiver domain LQQ45_11345 PF02954 Bacterial regulatory protein, Fis family LQQ45_11350 PF00753 Metallo-beta-lactamase superfamily LQQ45_11350 PF04273 Putative phosphatase (DUF442) LQQ45_11365 PF01925 Sulfite exporter TauE/SafE LQQ45_11380 PF12833 Helix-turn-helix domain LQQ45_11380 PF06445 GyrI-like small molecule binding domain LQQ45_11385 PF01638 HxlR-like helix-turn-helix LQQ45_11390 PF02525 Flavodoxin-like fold LQQ45_11400 PF00392 Bacterial regulatory proteins, gntR family LQQ45_11400 PF07702 UTRA domain LQQ45_11415 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LQQ45_11420 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_11425 PF00005 ABC transporter LQQ45_11440 PF00083 Sugar (and other) transporter LQQ45_11445 PF00593 TonB dependent receptor LQQ45_11445 PF07715 TonB-dependent Receptor Plug Domain LQQ45_11450 PF10415 Fumarase C C-terminus LQQ45_11450 PF00206 Lyase LQQ45_11465 PF03466 LysR substrate binding domain LQQ45_11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_11470 PF03466 LysR substrate binding domain LQQ45_11470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_11475 PF02803 Thiolase, C-terminal domain LQQ45_11475 PF00108 Thiolase, N-terminal domain LQQ45_11480 PF02667 Short chain fatty acid transporter LQQ45_11485 PF01144 Coenzyme A transferase LQQ45_11490 PF01144 Coenzyme A transferase LQQ45_11495 PF03466 LysR substrate binding domain LQQ45_11495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_11515 PF12833 Helix-turn-helix domain LQQ45_11515 PF06719 AraC-type transcriptional regulator N-terminus LQQ45_11520 PF07690 Major Facilitator Superfamily LQQ45_11525 PF01738 Dienelactone hydrolase family LQQ45_11540 PF01613 Flavin reductase like domain LQQ45_11550 PF14525 AraC-binding-like domain LQQ45_11550 PF12833 Helix-turn-helix domain LQQ45_11555 PF00970 Oxidoreductase FAD-binding domain LQQ45_11555 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_11555 PF00175 Oxidoreductase NAD-binding domain LQQ45_11560 PF00866 Ring hydroxylating beta subunit LQQ45_11565 PF00355 Rieske [2Fe-2S] domain LQQ45_11565 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LQQ45_11570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_11570 PF03459 TOBE domain LQQ45_11585 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_11590 PF00005 ABC transporter LQQ45_11590 PF03459 TOBE domain LQQ45_11595 PF00106 short chain dehydrogenase LQQ45_11600 PF00550 Phosphopantetheine attachment site LQQ45_11600 PF00857 Isochorismatase family LQQ45_11610 PF00149 Calcineurin-like phosphoesterase LQQ45_11615 PF13089 Polyphosphate kinase N-terminal domain LQQ45_11615 PF17941 Polyphosphate kinase C-terminal domain 1 LQQ45_11615 PF13090 Polyphosphate kinase C-terminal domain 2 LQQ45_11615 PF02503 Polyphosphate kinase middle domain LQQ45_11620 PF08042 PqqA family LQQ45_11625 PF12706 Beta-lactamase superfamily domain LQQ45_11630 PF03070 TENA/THI-4/PQQC family LQQ45_11635 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LQQ45_11640 PF04055 Radical SAM superfamily LQQ45_11640 PF13186 Iron-sulfur cluster-binding domain LQQ45_11645 PF01244 Membrane dipeptidase (Peptidase family M19) LQQ45_11665 PF13091 PLD-like domain LQQ45_11680 PF00199 Catalase LQQ45_11690 PF08240 Alcohol dehydrogenase GroES-like domain LQQ45_11690 PF00107 Zinc-binding dehydrogenase LQQ45_11705 PF00577 Outer membrane usher protein LQQ45_11705 PF13954 PapC N-terminal domain LQQ45_11705 PF13953 PapC C-terminal domain LQQ45_11710 PF02753 Pili assembly chaperone PapD, C-terminal domain LQQ45_11710 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LQQ45_11715 PF16970 Type-1 fimbrial protein, A LQQ45_11735 PF01266 FAD dependent oxidoreductase LQQ45_11750 PF00743 Flavin-binding monooxygenase-like LQQ45_11755 PF12146 Serine aminopeptidase, S33 LQQ45_11760 PF02321 Outer membrane efflux protein LQQ45_11765 PF00873 AcrB/AcrD/AcrF family LQQ45_11770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQQ45_11770 PF00529 HlyD membrane-fusion protein of T1SS LQQ45_11775 PF00486 Transcriptional regulatory protein, C terminal LQQ45_11775 PF00072 Response regulator receiver domain LQQ45_11780 PF16527 Two-component sensor protein CpxA, periplasmic domain LQQ45_11780 PF00672 HAMP domain LQQ45_11780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_11780 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_11790 PF02311 AraC-like ligand binding domain LQQ45_11790 PF12833 Helix-turn-helix domain LQQ45_11795 PF12146 Serine aminopeptidase, S33 LQQ45_11810 PF03466 LysR substrate binding domain LQQ45_11810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_11815 PF12146 Serine aminopeptidase, S33 LQQ45_11820 PF13673 Acetyltransferase (GNAT) domain LQQ45_11850 PF02151 UvrB/uvrC motif LQQ45_11850 PF04851 Type III restriction enzyme, res subunit LQQ45_11850 PF12344 Ultra-violet resistance protein B LQQ45_11850 PF00271 Helicase conserved C-terminal domain LQQ45_11850 PF17757 UvrB interaction domain LQQ45_11855 PF13291 ACT domain LQQ45_11855 PF04607 Region found in RelA / SpoT proteins LQQ45_11855 PF02824 TGS domain LQQ45_11865 PF01975 Survival protein SurE LQQ45_11890 PF07690 Major Facilitator Superfamily LQQ45_11895 PF13533 Biotin-lipoyl like LQQ45_11900 PF01425 Amidase LQQ45_11905 PF00196 Bacterial regulatory proteins, luxR family LQQ45_11905 PF03472 Autoinducer binding domain LQQ45_11920 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LQQ45_11925 PF14572 Phosphoribosyl synthetase-associated domain LQQ45_11925 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LQQ45_11940 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LQQ45_11940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LQQ45_11945 PF07690 Major Facilitator Superfamily LQQ45_11950 PF01370 NAD dependent epimerase/dehydratase family LQQ45_11955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_11955 PF03466 LysR substrate binding domain LQQ45_11965 PF00920 Dehydratase family LQQ45_11970 PF00171 Aldehyde dehydrogenase family LQQ45_11985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQQ45_11985 PF00529 HlyD membrane-fusion protein of T1SS LQQ45_12000 PF03466 LysR substrate binding domain LQQ45_12000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_12025 PF00186 Dihydrofolate reductase LQQ45_12030 PF00583 Acetyltransferase (GNAT) family LQQ45_12060 PF18623 TnsE C-terminal domain LQQ45_12065 PF15978 Tn7-like transposition protein D LQQ45_12065 PF06527 TniQ LQQ45_12070 PF11426 Tn7 transposition regulator TnsC LQQ45_12070 PF13401 AAA domain LQQ45_12075 PF00665 Integrase core domain LQQ45_12080 PF08722 TnsA endonuclease N terminal LQQ45_12080 PF08721 TnsA endonuclease C terminal LQQ45_12090 PF07702 UTRA domain LQQ45_12090 PF00392 Bacterial regulatory proteins, gntR family LQQ45_12100 PF04909 Amidohydrolase LQQ45_12105 PF07690 Major Facilitator Superfamily LQQ45_12110 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) LQQ45_12150 PF07687 Peptidase dimerisation domain LQQ45_12150 PF01546 Peptidase family M20/M25/M40 LQQ45_12160 PF00999 Sodium/hydrogen exchanger family LQQ45_12160 PF02254 TrkA-N domain LQQ45_12165 PF07995 Glucose / Sorbosone dehydrogenase LQQ45_12170 PF03466 LysR substrate binding domain LQQ45_12170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_12175 PF00857 Isochorismatase family LQQ45_12190 PF07995 Glucose / Sorbosone dehydrogenase LQQ45_12195 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQQ45_12205 PF06314 Acetoacetate decarboxylase (ADC) LQQ45_12215 PF12833 Helix-turn-helix domain LQQ45_12215 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LQQ45_12220 PF08359 YsiA-like protein, C-terminal region LQQ45_12220 PF00440 Bacterial regulatory proteins, tetR family LQQ45_12225 PF12706 Beta-lactamase superfamily domain LQQ45_12235 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_12245 PF09278 MerR, DNA binding LQQ45_12245 PF00376 MerR family regulatory protein LQQ45_12255 PF00106 short chain dehydrogenase LQQ45_12260 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQQ45_12260 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_12265 PF00561 alpha/beta hydrolase fold LQQ45_12275 PF00171 Aldehyde dehydrogenase family LQQ45_12285 PF07690 Major Facilitator Superfamily LQQ45_12290 PF00920 Dehydratase family LQQ45_12295 PF00392 Bacterial regulatory proteins, gntR family LQQ45_12295 PF07729 FCD domain LQQ45_12305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_12305 PF03466 LysR substrate binding domain LQQ45_12310 PF13378 Enolase C-terminal domain-like LQQ45_12310 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LQQ45_12315 PF02426 Muconolactone delta-isomerase LQQ45_12320 PF00775 Dioxygenase LQQ45_12320 PF04444 Catechol dioxygenase N terminus LQQ45_12325 PF01144 Coenzyme A transferase LQQ45_12330 PF01144 Coenzyme A transferase LQQ45_12335 PF00108 Thiolase, N-terminal domain LQQ45_12335 PF02803 Thiolase, C-terminal domain LQQ45_12340 PF12146 Serine aminopeptidase, S33 LQQ45_12345 PF01804 Penicillin amidase LQQ45_12350 PF00171 Aldehyde dehydrogenase family LQQ45_12360 PF01179 Copper amine oxidase, enzyme domain LQQ45_12360 PF02728 Copper amine oxidase, N3 domain LQQ45_12360 PF02727 Copper amine oxidase, N2 domain LQQ45_12360 PF07833 Copper amine oxidase N-terminal domain LQQ45_12365 PF12833 Helix-turn-helix domain LQQ45_12365 PF02311 AraC-like ligand binding domain LQQ45_12370 PF01613 Flavin reductase like domain LQQ45_12375 PF00175 Oxidoreductase NAD-binding domain LQQ45_12375 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_12390 PF00355 Rieske [2Fe-2S] domain LQQ45_12390 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LQQ45_12405 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_12410 PF01425 Amidase LQQ45_12425 PF07690 Major Facilitator Superfamily LQQ45_12435 PF00106 short chain dehydrogenase LQQ45_12450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_12450 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_12450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_12455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_12455 PF03466 LysR substrate binding domain LQQ45_12460 PF01614 Bacterial transcriptional regulator LQQ45_12460 PF09339 IclR helix-turn-helix domain LQQ45_12465 PF00753 Metallo-beta-lactamase superfamily LQQ45_12475 PF04143 Sulphur transport LQQ45_12485 PF01011 PQQ enzyme repeat LQQ45_12485 PF13360 PQQ-like domain LQQ45_12490 PF04966 Carbohydrate-selective porin, OprB family LQQ45_12495 PF05048 Periplasmic copper-binding protein (NosD) LQQ45_12500 PF01487 Type I 3-dehydroquinase LQQ45_12505 PF00775 Dioxygenase LQQ45_12510 PF00775 Dioxygenase LQQ45_12510 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LQQ45_12515 PF02627 Carboxymuconolactone decarboxylase family LQQ45_12520 PF07690 Major Facilitator Superfamily LQQ45_12525 PF00561 alpha/beta hydrolase fold LQQ45_12530 PF10397 Adenylosuccinate lyase C-terminus LQQ45_12530 PF00206 Lyase LQQ45_12535 PF02803 Thiolase, C-terminal domain LQQ45_12535 PF00108 Thiolase, N-terminal domain LQQ45_12540 PF01144 Coenzyme A transferase LQQ45_12545 PF01144 Coenzyme A transferase LQQ45_12550 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LQQ45_12555 PF04977 Septum formation initiator LQQ45_12560 PF04239 Protein of unknown function (DUF421) LQQ45_12565 PF00113 Enolase, C-terminal TIM barrel domain LQQ45_12565 PF03952 Enolase, N-terminal domain LQQ45_12570 PF00793 DAHP synthetase I family LQQ45_12575 PF06418 CTP synthase N-terminus LQQ45_12575 PF00117 Glutamine amidotransferase class-I LQQ45_12605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQQ45_12605 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_12620 PF00793 DAHP synthetase I family LQQ45_12625 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LQQ45_12630 PF00004 ATPase family associated with various cellular activities (AAA) LQQ45_12630 PF07724 AAA domain (Cdc48 subfamily) LQQ45_12630 PF17871 AAA lid domain LQQ45_12630 PF02861 Clp amino terminal domain, pathogenicity island component LQQ45_12630 PF10431 C-terminal, D2-small domain, of ClpB protein LQQ45_12635 PF02617 ATP-dependent Clp protease adaptor protein ClpS LQQ45_12645 PF01118 Semialdehyde dehydrogenase, NAD binding domain LQQ45_12645 PF02774 Semialdehyde dehydrogenase, dimerisation domain LQQ45_12660 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LQQ45_12665 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_12665 PF00585 C-terminal regulatory domain of Threonine dehydratase LQQ45_12670 PF02080 TrkA-C domain LQQ45_12670 PF02254 TrkA-N domain LQQ45_12675 PF02386 Cation transport protein LQQ45_12680 PF02253 Phospholipase A1 LQQ45_12685 PF08367 Peptidase M16C associated LQQ45_12685 PF05193 Peptidase M16 inactive domain LQQ45_12685 PF00675 Insulinase (Peptidase family M16) LQQ45_12695 PF00294 pfkB family carbohydrate kinase LQQ45_12705 PF07290 Protein of unknown function (DUF1449) LQQ45_12715 PF01654 Cytochrome bd terminal oxidase subunit I LQQ45_12720 PF02322 Cytochrome bd terminal oxidase subunit II LQQ45_12725 PF08173 Membrane bound YbgT-like protein LQQ45_12735 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LQQ45_12745 PF02881 SRP54-type protein, helical bundle domain LQQ45_12745 PF00448 SRP54-type protein, GTPase domain LQQ45_12770 PF00478 IMP dehydrogenase / GMP reductase domain LQQ45_12770 PF00571 CBS domain LQQ45_12775 PF00202 Aminotransferase class-III LQQ45_12780 PF00462 Glutaredoxin LQQ45_12790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_12790 PF03466 LysR substrate binding domain LQQ45_12795 PF00557 Metallopeptidase family M24 LQQ45_12800 PF05525 Branched-chain amino acid transport protein LQQ45_12825 PF05524 PEP-utilising enzyme, N-terminal LQQ45_12825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LQQ45_12825 PF00391 PEP-utilising enzyme, mobile domain LQQ45_12825 PF00381 PTS HPr component phosphorylation site LQQ45_12825 PF02896 PEP-utilising enzyme, TIM barrel domain LQQ45_12830 PF00294 pfkB family carbohydrate kinase LQQ45_12835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LQQ45_12835 PF02378 Phosphotransferase system, EIIC LQQ45_12855 PF00563 EAL domain LQQ45_12855 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_12855 PF03707 Bacterial signalling protein N terminal repeat LQQ45_12865 PF07995 Glucose / Sorbosone dehydrogenase LQQ45_12870 PF02586 SOS response associated peptidase (SRAP) LQQ45_12875 PF00916 Sulfate permease family LQQ45_12875 PF01740 STAS domain LQQ45_12880 PF00082 Subtilase family LQQ45_12880 PF05922 Peptidase inhibitor I9 LQQ45_12895 PF00324 Amino acid permease LQQ45_12900 PF00266 Aminotransferase class-V LQQ45_12905 PF01037 Lrp/AsnC ligand binding domain LQQ45_12930 PF13419 Haloacid dehalogenase-like hydrolase LQQ45_12935 PF01479 S4 domain LQQ45_12940 PF00154 recA bacterial DNA recombination protein LQQ45_12945 PF02631 RecX family LQQ45_12960 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_12960 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LQQ45_12965 PF07977 FabA-like domain LQQ45_12970 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LQQ45_12970 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_12980 PF07244 Surface antigen variable number repeat LQQ45_12980 PF01103 Surface antigen LQQ45_12985 PF17820 PDZ domain LQQ45_12985 PF13180 PDZ domain LQQ45_12985 PF02163 Peptidase family M50 LQQ45_12990 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LQQ45_12990 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LQQ45_12990 PF13288 DXP reductoisomerase C-terminal domain LQQ45_13000 PF01255 Putative undecaprenyl diphosphate synthase LQQ45_13005 PF01765 Ribosome recycling factor LQQ45_13010 PF00696 Amino acid kinase family LQQ45_13015 PF04055 Radical SAM superfamily LQQ45_13015 PF00919 Uncharacterized protein family UPF0004 LQQ45_13015 PF18693 TRAM domain LQQ45_13025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_13025 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_13025 PF00989 PAS fold LQQ45_13030 PF02954 Bacterial regulatory protein, Fis family LQQ45_13030 PF00072 Response regulator receiver domain LQQ45_13030 PF00158 Sigma-54 interaction domain LQQ45_13035 PF00440 Bacterial regulatory proteins, tetR family LQQ45_13040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LQQ45_13040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LQQ45_13050 PF02542 YgbB family LQQ45_13060 PF01266 FAD dependent oxidoreductase LQQ45_13080 PF10415 Fumarase C C-terminus LQQ45_13080 PF00206 Lyase LQQ45_13085 PF16363 GDP-mannose 4,6 dehydratase LQQ45_13090 PF02635 DsrE/DsrF-like family LQQ45_13110 PF00892 EamA-like transporter family LQQ45_13115 PF00155 Aminotransferase class I and II LQQ45_13115 PF00392 Bacterial regulatory proteins, gntR family LQQ45_13120 PF01638 HxlR-like helix-turn-helix LQQ45_13125 PF00994 Probable molybdopterin binding domain LQQ45_13125 PF03454 MoeA C-terminal region (domain IV) LQQ45_13125 PF03453 MoeA N-terminal region (domain I and II) LQQ45_13130 PF01967 MoaC family LQQ45_13130 PF00994 Probable molybdopterin binding domain LQQ45_13135 PF02391 MoaE protein LQQ45_13145 PF06463 Molybdenum Cofactor Synthesis C LQQ45_13145 PF04055 Radical SAM superfamily LQQ45_13150 PF01568 Molydopterin dinucleotide binding domain LQQ45_13150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LQQ45_13150 PF00384 Molybdopterin oxidoreductase LQQ45_13155 PF12804 MobA-like NTP transferase domain LQQ45_13160 PF04324 BFD-like [2Fe-2S] binding domain LQQ45_13160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LQQ45_13160 PF00384 Molybdopterin oxidoreductase LQQ45_13160 PF01568 Molydopterin dinucleotide binding domain LQQ45_13165 PF18267 Rubredoxin NAD+ reductase C-terminal domain LQQ45_13165 PF04324 BFD-like [2Fe-2S] binding domain LQQ45_13165 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQQ45_13165 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LQQ45_13165 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_13170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQQ45_13170 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_13170 PF13806 Rieske-like [2Fe-2S] domain LQQ45_13170 PF18267 Rubredoxin NAD+ reductase C-terminal domain LQQ45_13170 PF04324 BFD-like [2Fe-2S] binding domain LQQ45_13170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LQQ45_13180 PF00072 Response regulator receiver domain LQQ45_13180 PF00486 Transcriptional regulatory protein, C terminal LQQ45_13185 PF00005 ABC transporter LQQ45_13195 PF13438 Domain of unknown function (DUF4113) LQQ45_13195 PF00817 impB/mucB/samB family LQQ45_13195 PF11799 impB/mucB/samB family C-terminal domain LQQ45_13200 PF01220 Dehydroquinase class II LQQ45_13205 PF00364 Biotin-requiring enzyme LQQ45_13210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQQ45_13210 PF00289 Biotin carboxylase, N-terminal domain LQQ45_13210 PF02785 Biotin carboxylase C-terminal domain LQQ45_13220 PF12832 MFS_1 like family LQQ45_13240 PF01645 Conserved region in glutamate synthase LQQ45_13255 PF01565 FAD binding domain LQQ45_13255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LQQ45_13260 PF01451 Low molecular weight phosphotyrosine protein phosphatase LQQ45_13270 PF00465 Iron-containing alcohol dehydrogenase LQQ45_13275 PF03061 Thioesterase superfamily LQQ45_13280 PF05506 Domain of unknown function (DUF756) LQQ45_13280 PF04185 Phosphoesterase family LQQ45_13285 PF12169 DNA polymerase III subunits gamma and tau domain III LQQ45_13285 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LQQ45_13285 PF12170 DNA polymerase III tau subunit V interacting with alpha LQQ45_13290 PF07690 Major Facilitator Superfamily LQQ45_13300 PF00144 Beta-lactamase LQQ45_13305 PF01575 MaoC like domain LQQ45_13315 PF00108 Thiolase, N-terminal domain LQQ45_13315 PF02803 Thiolase, C-terminal domain LQQ45_13325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_13325 PF03466 LysR substrate binding domain LQQ45_13330 PF00923 Transaldolase/Fructose-6-phosphate aldolase LQQ45_13335 PF01810 LysE type translocator LQQ45_13340 PF01037 Lrp/AsnC ligand binding domain LQQ45_13345 PF03594 Benzoate membrane transport protein LQQ45_13350 PF02308 MgtC family LQQ45_13355 PF00689 Cation transporting ATPase, C-terminus LQQ45_13355 PF00690 Cation transporter/ATPase, N-terminus LQQ45_13375 PF00582 Universal stress protein family LQQ45_13380 PF00005 ABC transporter LQQ45_13380 PF12848 ABC transporter LQQ45_13400 PF07715 TonB-dependent Receptor Plug Domain LQQ45_13400 PF00593 TonB dependent receptor LQQ45_13435 PF00924 Mechanosensitive ion channel LQQ45_13440 PF07715 TonB-dependent Receptor Plug Domain LQQ45_13440 PF00593 TonB dependent receptor LQQ45_13445 PF00440 Bacterial regulatory proteins, tetR family LQQ45_13460 PF02224 Cytidylate kinase LQQ45_13470 PF01037 Lrp/AsnC ligand binding domain LQQ45_13475 PF01817 Chorismate mutase type II LQQ45_13500 PF13954 PapC N-terminal domain LQQ45_13500 PF13953 PapC C-terminal domain LQQ45_13500 PF00577 Outer membrane usher protein LQQ45_13515 PF00665 Integrase core domain LQQ45_13515 PF13936 Helix-turn-helix domain LQQ45_13520 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LQQ45_13520 PF01433 Peptidase family M1 domain LQQ45_13520 PF11940 Domain of unknown function (DUF3458) Ig-like fold LQQ45_13535 PF02110 Hydroxyethylthiazole kinase family LQQ45_13545 PF14493 Helix-turn-helix domain LQQ45_13545 PF05970 PIF1-like helicase LQQ45_13550 PF00465 Iron-containing alcohol dehydrogenase LQQ45_13565 PF00171 Aldehyde dehydrogenase family LQQ45_13570 PF13520 Amino acid permease LQQ45_13575 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LQQ45_13580 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LQQ45_13585 PF00117 Glutamine amidotransferase class-I LQQ45_13585 PF00958 GMP synthase C terminal domain LQQ45_13585 PF02540 NAD synthase LQQ45_13590 PF00749 tRNA synthetases class I (E and Q), catalytic domain LQQ45_13590 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LQQ45_13595 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LQQ45_13600 PF00149 Calcineurin-like phosphoesterase LQQ45_13610 PF00881 Nitroreductase family LQQ45_13620 PF17209 Hfq protein LQQ45_13630 PF01119 DNA mismatch repair protein, C-terminal domain LQQ45_13630 PF08676 MutL C terminal dimerisation domain LQQ45_13635 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LQQ45_13640 PF01479 S4 domain LQQ45_13640 PF00849 RNA pseudouridylate synthase LQQ45_13655 PF00849 RNA pseudouridylate synthase LQQ45_13655 PF01479 S4 domain LQQ45_13665 PF04284 Protein of unknown function (DUF441) LQQ45_13670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_13670 PF03466 LysR substrate binding domain LQQ45_13715 PF00216 Bacterial DNA-binding protein LQQ45_13745 PF13401 AAA domain LQQ45_13745 PF01471 Putative peptidoglycan binding domain LQQ45_13815 PF03237 Terminase-like family LQQ45_13825 PF06074 Protein of unknown function (DUF935) LQQ45_13830 PF04233 Phage Mu protein F like protein LQQ45_13835 PF05069 Phage virion morphogenesis family LQQ45_13850 PF10124 Mu-like prophage major head subunit gpT LQQ45_13945 PF07690 Major Facilitator Superfamily LQQ45_13950 PF00027 Cyclic nucleotide-binding domain LQQ45_13950 PF00520 Ion transport protein LQQ45_13960 PF00330 Aconitase family (aconitate hydratase) LQQ45_13960 PF06434 Aconitate hydratase 2 N-terminus LQQ45_13960 PF11791 Aconitate B N-terminal domain LQQ45_13975 PF01103 Surface antigen LQQ45_13975 PF17243 POTRA domain TamA domain 1 LQQ45_13975 PF07244 Surface antigen variable number repeat LQQ45_13980 PF07690 Major Facilitator Superfamily LQQ45_13985 PF03232 Ubiquinone biosynthesis protein COQ7 LQQ45_13995 PF00120 Glutamine synthetase, catalytic domain LQQ45_14000 PF00486 Transcriptional regulatory protein, C terminal LQQ45_14000 PF00072 Response regulator receiver domain LQQ45_14005 PF13493 Domain of unknown function (DUF4118) LQQ45_14005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_14005 PF02702 Osmosensitive K+ channel His kinase sensor domain LQQ45_14005 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_14010 PF02669 K+-transporting ATPase, c chain LQQ45_14020 PF03814 Potassium-transporting ATPase A subunit LQQ45_14035 PF03109 ABC1 family LQQ45_14040 PF00899 ThiF family LQQ45_14045 PF01613 Flavin reductase like domain LQQ45_14050 PF13193 AMP-binding enzyme C-terminal domain LQQ45_14050 PF00501 AMP-binding enzyme LQQ45_14055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_14055 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_14055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_14060 PF00106 short chain dehydrogenase LQQ45_14065 PF12833 Helix-turn-helix domain LQQ45_14075 PF09084 NMT1/THI5 like LQQ45_14080 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_14085 PF17827 PrmC N-terminal domain LQQ45_14085 PF13847 Methyltransferase domain LQQ45_14090 PF03462 PCRF domain LQQ45_14090 PF00472 RF-1 domain LQQ45_14100 PF03466 LysR substrate binding domain LQQ45_14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_14115 PF00296 Luciferase-like monooxygenase LQQ45_14125 PF13994 PgaD-like protein LQQ45_14130 PF00535 Glycosyl transferase family 2 LQQ45_14135 PF01522 Polysaccharide deacetylase LQQ45_14135 PF14883 Hypothetical glycosyl hydrolase family 13 LQQ45_14145 PF03618 Kinase/pyrophosphorylase LQQ45_14150 PF00391 PEP-utilising enzyme, mobile domain LQQ45_14150 PF02896 PEP-utilising enzyme, TIM barrel domain LQQ45_14150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LQQ45_14160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LQQ45_14160 PF06481 COX Aromatic Rich Motif LQQ45_14165 PF00115 Cytochrome C and Quinol oxidase polypeptide I LQQ45_14170 PF00510 Cytochrome c oxidase subunit III LQQ45_14175 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LQQ45_14180 PF01040 UbiA prenyltransferase family LQQ45_14185 PF01250 Ribosomal protein S6 LQQ45_14190 PF01084 Ribosomal protein S18 LQQ45_14195 PF01281 Ribosomal protein L9, N-terminal domain LQQ45_14195 PF03948 Ribosomal protein L9, C-terminal domain LQQ45_14200 PF00772 DnaB-like helicase N terminal domain LQQ45_14200 PF03796 DnaB-like helicase C terminal domain LQQ45_14205 PF00842 Alanine racemase, C-terminal domain LQQ45_14205 PF01168 Alanine racemase, N-terminal domain LQQ45_14215 PF08379 Bacterial transglutaminase-like N-terminal region LQQ45_14215 PF01841 Transglutaminase-like superfamily LQQ45_14225 PF14403 Circularly permuted ATP-grasp type 2 LQQ45_14235 PF13932 GidA associated domain LQQ45_14235 PF01134 Glucose inhibited division protein A LQQ45_14255 PF02954 Bacterial regulatory protein, Fis family LQQ45_14260 PF01808 AICARFT/IMPCHase bienzyme LQQ45_14260 PF02142 MGS-like domain LQQ45_14265 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LQQ45_14265 PF02843 Phosphoribosylglycinamide synthetase, C domain LQQ45_14265 PF02844 Phosphoribosylglycinamide synthetase, N domain LQQ45_14270 PF03180 NLPA lipoprotein LQQ45_14275 PF00005 ABC transporter LQQ45_14275 PF09383 NIL domain LQQ45_14280 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_14285 PF00753 Metallo-beta-lactamase superfamily LQQ45_14285 PF16123 Hydroxyacylglutathione hydrolase C-terminus LQQ45_14295 PF00375 Sodium:dicarboxylate symporter family LQQ45_14315 PF07995 Glucose / Sorbosone dehydrogenase LQQ45_14320 PF00892 EamA-like transporter family LQQ45_14325 PF01177 Asp/Glu/Hydantoin racemase LQQ45_14345 PF00486 Transcriptional regulatory protein, C terminal LQQ45_14345 PF00072 Response regulator receiver domain LQQ45_14350 PF08521 Two-component sensor kinase N-terminal LQQ45_14350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_14350 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_14390 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_14390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_14390 PF00672 HAMP domain LQQ45_14395 PF00072 Response regulator receiver domain LQQ45_14395 PF00486 Transcriptional regulatory protein, C terminal LQQ45_14405 PF00576 HIUase/Transthyretin family LQQ45_14415 PF02470 MlaD protein LQQ45_14420 PF04403 Paraquat-inducible protein A LQQ45_14445 PF00083 Sugar (and other) transporter LQQ45_14445 PF08946 Osmosensory transporter coiled coil LQQ45_14505 PF07729 FCD domain LQQ45_14505 PF00392 Bacterial regulatory proteins, gntR family LQQ45_14520 PF00106 short chain dehydrogenase LQQ45_14525 PF00248 Aldo/keto reductase family LQQ45_14530 PF03466 LysR substrate binding domain LQQ45_14530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_14540 PF03616 Sodium/glutamate symporter LQQ45_14545 PF00561 alpha/beta hydrolase fold LQQ45_14570 PF04076 Bacterial OB fold (BOF) protein LQQ45_14600 PF00324 Amino acid permease LQQ45_14605 PF00171 Aldehyde dehydrogenase family LQQ45_14610 PF00202 Aminotransferase class-III LQQ45_14615 PF03466 LysR substrate binding domain LQQ45_14615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_14640 PF00069 Protein kinase domain LQQ45_14660 PF00814 Glycoprotease family LQQ45_14665 PF01165 Ribosomal protein S21 LQQ45_14670 PF09424 Yqey-like protein LQQ45_14675 PF01435 Peptidase family M48 LQQ45_14680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LQQ45_14680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LQQ45_14695 PF00156 Phosphoribosyl transferase domain LQQ45_14700 PF02674 Colicin V production protein LQQ45_14705 PF01180 Dihydroorotate dehydrogenase LQQ45_14725 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LQQ45_14725 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LQQ45_14730 PF00881 Nitroreductase family LQQ45_14740 PF00270 DEAD/DEAH box helicase LQQ45_14740 PF00271 Helicase conserved C-terminal domain LQQ45_14745 PF00313 'Cold-shock' DNA-binding domain LQQ45_14760 PF00140 Sigma-70 factor, region 1.2 LQQ45_14760 PF04542 Sigma-70 region 2 LQQ45_14760 PF04545 Sigma-70, region 4 LQQ45_14765 PF04241 Protein of unknown function (DUF423) LQQ45_14775 PF05690 Thiazole biosynthesis protein ThiG LQQ45_14780 PF03883 Peroxide stress protein YaaA LQQ45_14790 PF00753 Metallo-beta-lactamase superfamily LQQ45_14795 PF07687 Peptidase dimerisation domain LQQ45_14795 PF01546 Peptidase family M20/M25/M40 LQQ45_14805 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQQ45_14810 PF01842 ACT domain LQQ45_14810 PF00800 Prephenate dehydratase LQQ45_14810 PF01817 Chorismate mutase type II LQQ45_14815 PF00756 Putative esterase LQQ45_14820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_14820 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_14820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_14825 PF00375 Sodium:dicarboxylate symporter family LQQ45_14830 PF02885 Glycosyl transferase family, helical bundle domain LQQ45_14830 PF00591 Glycosyl transferase family, a/b domain LQQ45_14835 PF07023 Protein of unknown function (DUF1315) LQQ45_14840 PF01513 ATP-NAD kinase LQQ45_14845 PF14814 Bifunctional transglycosylase second domain LQQ45_14845 PF00905 Penicillin binding protein transpeptidase domain LQQ45_14845 PF00912 Transglycosylase LQQ45_14855 PF00293 NUDIX domain LQQ45_14865 PF08521 Two-component sensor kinase N-terminal LQQ45_14865 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_14865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_14870 PF00072 Response regulator receiver domain LQQ45_14870 PF00486 Transcriptional regulatory protein, C terminal LQQ45_14880 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LQQ45_14880 PF00437 Type II/IV secretion system protein LQQ45_14890 PF01980 tRNA-methyltransferase O LQQ45_14890 PF18389 TrmO C-terminal domain LQQ45_14895 PF00175 Oxidoreductase NAD-binding domain LQQ45_14895 PF00970 Oxidoreductase FAD-binding domain LQQ45_14900 PF02567 Phenazine biosynthesis-like protein LQQ45_14905 PF00155 Aminotransferase class I and II LQQ45_14905 PF00392 Bacterial regulatory proteins, gntR family LQQ45_14910 PF01136 Peptidase family U32 LQQ45_14910 PF16325 Peptidase family U32 C-terminal domain LQQ45_14915 PF00037 4Fe-4S binding domain LQQ45_14920 PF00893 Small Multidrug Resistance protein LQQ45_14925 PF00005 ABC transporter LQQ45_14930 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_14935 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_14940 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQQ45_14945 PF03466 LysR substrate binding domain LQQ45_14945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_14950 PF13533 Biotin-lipoyl like LQQ45_14955 PF00873 AcrB/AcrD/AcrF family LQQ45_14960 PF02321 Outer membrane efflux protein LQQ45_14965 PF00464 Serine hydroxymethyltransferase LQQ45_15045 PF01551 Peptidase family M23 LQQ45_15045 PF08525 Opacity-associated protein A N-terminal motif LQQ45_15045 PF01476 LysM domain LQQ45_15230 PF00149 Calcineurin-like phosphoesterase LQQ45_15280 PF00772 DnaB-like helicase N terminal domain LQQ45_15280 PF03796 DnaB-like helicase C terminal domain LQQ45_15280 PF14528 LAGLIDADG-like domain LQQ45_15315 PF02384 N-6 DNA Methylase LQQ45_15315 PF12161 HsdM N-terminal domain LQQ45_15370 PF00589 Phage integrase family LQQ45_15375 PF00005 ABC transporter LQQ45_15380 PF01061 ABC-2 type transporter LQQ45_15385 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LQQ45_15385 PF14489 QueF-like protein LQQ45_15395 PF01098 Cell cycle protein LQQ45_15400 PF13406 Transglycosylase SLT domain LQQ45_15405 PF03330 Lytic transglycolase LQQ45_15405 PF05036 Sporulation related domain LQQ45_15425 PF12833 Helix-turn-helix domain LQQ45_15435 PF00889 Elongation factor TS LQQ45_15440 PF00318 Ribosomal protein S2 LQQ45_15445 PF00557 Metallopeptidase family M24 LQQ45_15455 PF07690 Major Facilitator Superfamily LQQ45_15465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LQQ45_15465 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_15470 PF04055 Radical SAM superfamily LQQ45_15475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_15475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_15475 PF09317 Domain of unknown function (DUF1974) LQQ45_15490 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LQQ45_15490 PF05221 S-adenosyl-L-homocysteine hydrolase LQQ45_15495 PF02219 Methylenetetrahydrofolate reductase LQQ45_15500 PF04452 RNA methyltransferase LQQ45_15505 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_15505 PF03707 Bacterial signalling protein N terminal repeat LQQ45_15505 PF00563 EAL domain LQQ45_15510 PF00390 Malic enzyme, N-terminal domain LQQ45_15510 PF01515 Phosphate acetyl/butaryl transferase LQQ45_15510 PF03949 Malic enzyme, NAD binding domain LQQ45_15515 PF12627 Probable RNA and SrmB- binding site of polymerase A LQQ45_15515 PF01743 Poly A polymerase head domain LQQ45_15520 PF13180 PDZ domain LQQ45_15525 PF01784 NIF3 (NGG1p interacting factor 3) LQQ45_15530 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LQQ45_15530 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LQQ45_15565 PF01040 UbiA prenyltransferase family LQQ45_15570 PF04345 Chorismate lyase LQQ45_15575 PF00120 Glutamine synthetase, catalytic domain LQQ45_15575 PF03951 Glutamine synthetase, beta-Grasp domain LQQ45_15580 PF00854 POT family LQQ45_15590 PF00117 Glutamine amidotransferase class-I LQQ45_15600 PF07715 TonB-dependent Receptor Plug Domain LQQ45_15600 PF00593 TonB dependent receptor LQQ45_15605 PF00591 Glycosyl transferase family, a/b domain LQQ45_15605 PF02885 Glycosyl transferase family, helical bundle domain LQQ45_15610 PF00218 Indole-3-glycerol phosphate synthase LQQ45_15625 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LQQ45_15625 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LQQ45_15630 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_15630 PF01799 [2Fe-2S] binding domain LQQ45_15635 PF01227 GTP cyclohydrolase I LQQ45_15645 PF00144 Beta-lactamase LQQ45_15660 PF05675 Protein of unknown function (DUF817) LQQ45_15665 PF01208 Uroporphyrinogen decarboxylase (URO-D) LQQ45_15675 PF00425 chorismate binding enzyme LQQ45_15685 PF00975 Thioesterase domain LQQ45_15690 PF00005 ABC transporter LQQ45_15695 PF00664 ABC transporter transmembrane region LQQ45_15695 PF00005 ABC transporter LQQ45_15705 PF00282 Pyridoxal-dependent decarboxylase conserved domain LQQ45_15710 PF00857 Isochorismatase family LQQ45_15710 PF00550 Phosphopantetheine attachment site LQQ45_15715 PF00501 AMP-binding enzyme LQQ45_15715 PF13193 AMP-binding enzyme C-terminal domain LQQ45_15720 PF00501 AMP-binding enzyme LQQ45_15720 PF00550 Phosphopantetheine attachment site LQQ45_15720 PF00668 Condensation domain LQQ45_15725 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LQQ45_15730 PF00593 TonB dependent receptor LQQ45_15730 PF07715 TonB-dependent Receptor Plug Domain LQQ45_15735 PF01497 Periplasmic binding protein LQQ45_15740 PF00005 ABC transporter LQQ45_15745 PF01032 FecCD transport family LQQ45_15750 PF01032 FecCD transport family LQQ45_15755 PF00501 AMP-binding enzyme LQQ45_15755 PF13193 AMP-binding enzyme C-terminal domain LQQ45_15755 PF00668 Condensation domain LQQ45_15755 PF00550 Phosphopantetheine attachment site LQQ45_15755 PF00975 Thioesterase domain LQQ45_15760 PF13193 AMP-binding enzyme C-terminal domain LQQ45_15760 PF00550 Phosphopantetheine attachment site LQQ45_15760 PF00668 Condensation domain LQQ45_15760 PF00501 AMP-binding enzyme LQQ45_15770 PF08348 YheO-like PAS domain LQQ45_15770 PF13309 HTH domain LQQ45_15775 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_15780 PF02678 Pirin LQQ45_15780 PF17954 Quercetinase C-terminal cupin domain LQQ45_15805 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LQQ45_15815 PF00892 EamA-like transporter family LQQ45_15835 PF01266 FAD dependent oxidoreductase LQQ45_15835 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LQQ45_15840 PF18113 Rubredoxin binding C-terminal domain LQQ45_15840 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_15850 PF00171 Aldehyde dehydrogenase family LQQ45_15855 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LQQ45_15855 PF00355 Rieske [2Fe-2S] domain LQQ45_15860 PF02028 BCCT, betaine/carnitine/choline family transporter LQQ45_15865 PF02028 BCCT, betaine/carnitine/choline family transporter LQQ45_15870 PF00557 Metallopeptidase family M24 LQQ45_15875 PF03466 LysR substrate binding domain LQQ45_15875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_15885 PF04328 Selenoprotein, putative LQQ45_15890 PF02554 Carbon starvation protein CstA LQQ45_15890 PF13722 5TM C-terminal transporter carbon starvation CstA LQQ45_15895 PF08207 Elongation factor P (EF-P) KOW-like domain LQQ45_15895 PF09285 Elongation factor P, C-terminal LQQ45_15895 PF01132 Elongation factor P (EF-P) OB domain LQQ45_15900 PF04055 Radical SAM superfamily LQQ45_15910 PF12792 CSS motif domain associated with EAL LQQ45_15910 PF00563 EAL domain LQQ45_15915 PF01197 Ribosomal protein L31 LQQ45_15920 PF13593 SBF-like CPA transporter family (DUF4137) LQQ45_15925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LQQ45_15930 PF07690 Major Facilitator Superfamily LQQ45_15935 PF13654 AAA domain LQQ45_15935 PF05362 Lon protease (S16) C-terminal proteolytic domain LQQ45_15940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_15940 PF03466 LysR substrate binding domain LQQ45_15945 PF01551 Peptidase family M23 LQQ45_15945 PF01476 LysM domain LQQ45_15950 PF01975 Survival protein SurE LQQ45_15965 PF00768 D-alanyl-D-alanine carboxypeptidase LQQ45_15965 PF07943 Penicillin-binding protein 5, C-terminal domain LQQ45_15970 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_15975 PF13344 Haloacid dehalogenase-like hydrolase LQQ45_15975 PF00293 NUDIX domain LQQ45_15985 PF04356 Protein of unknown function (DUF489) LQQ45_15990 PF08328 Adenylosuccinate lyase C-terminal LQQ45_15990 PF00206 Lyase LQQ45_16005 PF01343 Peptidase family S49 LQQ45_16005 PF08496 Peptidase family S49 N-terminal LQQ45_16010 PF00005 ABC transporter LQQ45_16015 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_16020 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_16025 PF12849 PBP superfamily domain LQQ45_16030 PF00324 Amino acid permease LQQ45_16035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQQ45_16035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQQ45_16035 PF00205 Thiamine pyrophosphate enzyme, central domain LQQ45_16040 PF01037 Lrp/AsnC ligand binding domain LQQ45_16045 PF00171 Aldehyde dehydrogenase family LQQ45_16050 PF00282 Pyridoxal-dependent decarboxylase conserved domain LQQ45_16055 PF00202 Aminotransferase class-III LQQ45_16065 PF17754 MftR C-terminal domain LQQ45_16065 PF00440 Bacterial regulatory proteins, tetR family LQQ45_16075 PF00487 Fatty acid desaturase LQQ45_16080 PF00970 Oxidoreductase FAD-binding domain LQQ45_16080 PF00111 2Fe-2S iron-sulfur cluster binding domain LQQ45_16080 PF00175 Oxidoreductase NAD-binding domain LQQ45_16085 PF00440 Bacterial regulatory proteins, tetR family LQQ45_16095 PF12137 RNA polymerase recycling family C-terminal LQQ45_16095 PF18339 RapA N-terminal Tudor like domain 1 LQQ45_16095 PF00176 SNF2 family N-terminal domain LQQ45_16095 PF00271 Helicase conserved C-terminal domain LQQ45_16095 PF18337 RapA N-terminal Tudor like domain LQQ45_16100 PF00849 RNA pseudouridylate synthase LQQ45_16110 PF00202 Aminotransferase class-III LQQ45_16115 PF02581 Thiamine monophosphate synthase LQQ45_16125 PF09615 CRISPR-associated protein (Cas_Csy3) LQQ45_16130 PF09614 CRISPR-associated protein (Cas_Csy2) LQQ45_16135 PF09611 CRISPR-associated protein (Cas_Csy1) LQQ45_16145 PF01867 CRISPR associated protein Cas1 LQQ45_16170 PF00675 Insulinase (Peptidase family M16) LQQ45_16170 PF05193 Peptidase M16 inactive domain LQQ45_16175 PF02567 Phenazine biosynthesis-like protein LQQ45_16180 PF00375 Sodium:dicarboxylate symporter family LQQ45_16185 PF03466 LysR substrate binding domain LQQ45_16185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_16190 PF06779 Uncharacterised MFS-type transporter YbfB LQQ45_16205 PF00180 Isocitrate/isopropylmalate dehydrogenase LQQ45_16210 PF00849 RNA pseudouridylate synthase LQQ45_16215 PF03971 Monomeric isocitrate dehydrogenase LQQ45_16225 PF07943 Penicillin-binding protein 5, C-terminal domain LQQ45_16225 PF00768 D-alanyl-D-alanine carboxypeptidase LQQ45_16230 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_16235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQQ45_16240 PF00875 DNA photolyase LQQ45_16240 PF03441 FAD binding domain of DNA photolyase LQQ45_16270 PF02350 UDP-N-acetylglucosamine 2-epimerase LQQ45_16285 PF03060 Nitronate monooxygenase LQQ45_16290 PF01207 Dihydrouridine synthase (Dus) LQQ45_16295 PF07759 Protein of unknown function (DUF1615) LQQ45_16305 PF00696 Amino acid kinase family LQQ45_16305 PF01472 PUA domain LQQ45_16310 PF01018 GTP1/OBG LQQ45_16310 PF01926 50S ribosome-binding GTPase LQQ45_16325 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LQQ45_16325 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LQQ45_16330 PF00892 EamA-like transporter family LQQ45_16340 PF00271 Helicase conserved C-terminal domain LQQ45_16340 PF04851 Type III restriction enzyme, res subunit LQQ45_16340 PF02151 UvrB/uvrC motif LQQ45_16340 PF12344 Ultra-violet resistance protein B LQQ45_16340 PF17757 UvrB interaction domain LQQ45_16350 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_16350 PF17151 Periplasmic sensor domain LQQ45_16360 PF00155 Aminotransferase class I and II LQQ45_16390 PF00106 short chain dehydrogenase LQQ45_16395 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LQQ45_16400 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LQQ45_16405 PF11967 Recombination protein O N terminal LQQ45_16405 PF02565 Recombination protein O C terminal LQQ45_16415 PF07650 KH domain LQQ45_16415 PF01926 50S ribosome-binding GTPase LQQ45_16420 PF00035 Double-stranded RNA binding motif LQQ45_16420 PF14622 Ribonuclease-III-like LQQ45_16430 PF10502 Signal peptidase, peptidase S26 LQQ45_16435 PF03144 Elongation factor Tu domain 2 LQQ45_16435 PF06421 GTP-binding protein LepA C-terminus LQQ45_16435 PF00679 Elongation factor G C-terminus LQQ45_16435 PF00009 Elongation factor Tu GTP binding domain LQQ45_16445 PF13180 PDZ domain LQQ45_16450 PF00890 FAD binding domain LQQ45_16450 PF02910 Fumarate reductase flavoprotein C-term LQQ45_16460 PF02223 Thymidylate kinase LQQ45_16465 PF02618 YceG-like family LQQ45_16470 PF01063 Amino-transferase class IV LQQ45_16485 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_16490 PF00528 Binding-protein-dependent transport system inner membrane component LQQ45_16495 PF00005 ABC transporter LQQ45_16495 PF12857 TOBE-like domain LQQ45_16500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_16500 PF03466 LysR substrate binding domain LQQ45_16510 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_16510 PF14602 Hexapeptide repeat of succinyl-transferase LQQ45_16510 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LQQ45_16520 PF06508 Queuosine biosynthesis protein QueC LQQ45_16535 PF00578 AhpC/TSA family LQQ45_16545 PF01467 Cytidylyltransferase-like LQQ45_16545 PF00293 NUDIX domain LQQ45_16550 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_16555 PF01784 NIF3 (NGG1p interacting factor 3) LQQ45_16560 PF07690 Major Facilitator Superfamily LQQ45_16565 PF02769 AIR synthase related protein, C-terminal domain LQQ45_16565 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LQQ45_16565 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LQQ45_16570 PF01966 HD domain LQQ45_16575 PF07499 RuvA, C-terminal domain LQQ45_16575 PF01330 RuvA N terminal domain LQQ45_16580 PF17864 RuvB AAA lid domain LQQ45_16580 PF05491 RuvB C-terminal winged helix domain LQQ45_16580 PF05496 Holliday junction DNA helicase RuvB P-loop domain LQQ45_16585 PF01546 Peptidase family M20/M25/M40 LQQ45_16585 PF07687 Peptidase dimerisation domain LQQ45_16590 PF03061 Thioesterase superfamily LQQ45_16595 PF01618 MotA/TolQ/ExbB proton channel family LQQ45_16600 PF02472 Biopolymer transport protein ExbD/TolR LQQ45_16610 PF07676 WD40-like Beta Propeller Repeat LQQ45_16610 PF04052 TolB amino-terminal domain LQQ45_16615 PF00691 OmpA family LQQ45_16625 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LQQ45_16630 PF00588 SpoU rRNA Methylase family LQQ45_16630 PF08032 RNA 2'-O ribose methyltransferase substrate binding LQQ45_16660 PF00308 Bacterial dnaA protein LQQ45_16660 PF08299 Bacterial dnaA protein helix-turn-helix LQQ45_16660 PF11638 DnaA N-terminal domain LQQ45_16665 PF01594 AI-2E family transporter LQQ45_16670 PF00586 AIR synthase related protein, N-terminal domain LQQ45_16670 PF02769 AIR synthase related protein, C-terminal domain LQQ45_16675 PF00551 Formyl transferase LQQ45_16680 PF12697 Alpha/beta hydrolase family LQQ45_16685 PF06965 Na+/H+ antiporter 1 LQQ45_16685 PF01343 Peptidase family S49 LQQ45_16695 PF03772 Competence protein LQQ45_16695 PF00753 Metallo-beta-lactamase superfamily LQQ45_16695 PF13567 Domain of unknown function (DUF4131) LQQ45_16700 PF00005 ABC transporter LQQ45_16705 PF02687 FtsX-like permease family LQQ45_16705 PF12704 MacB-like periplasmic core domain LQQ45_16715 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LQQ45_16730 PF00266 Aminotransferase class-V LQQ45_16740 PF13533 Biotin-lipoyl like LQQ45_16760 PF00535 Glycosyl transferase family 2 LQQ45_16775 PF03989 DNA gyrase C-terminal domain, beta-propeller LQQ45_16775 PF00521 DNA gyrase/topoisomerase IV, subunit A LQQ45_16780 PF00766 Electron transfer flavoprotein FAD-binding domain LQQ45_16780 PF01012 Electron transfer flavoprotein domain LQQ45_16785 PF01012 Electron transfer flavoprotein domain LQQ45_16790 PF02899 Phage integrase, N-terminal SAM-like domain LQQ45_16790 PF00589 Phage integrase family LQQ45_16795 PF01810 LysE type translocator LQQ45_16800 PF00561 alpha/beta hydrolase fold LQQ45_16805 PF01678 Diaminopimelate epimerase LQQ45_16810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LQQ45_16810 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LQQ45_16820 PF00324 Amino acid permease LQQ45_16825 PF18073 Rubredoxin metal binding domain LQQ45_16835 PF00152 tRNA synthetases class II (D, K and N) LQQ45_16840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LQQ45_16840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LQQ45_16840 PF11890 Domain of unknown function (DUF3410) LQQ45_16845 PF06803 Protein of unknown function (DUF1232) LQQ45_16850 PF02634 FdhD/NarQ family LQQ45_16855 PF00384 Molybdopterin oxidoreductase LQQ45_16860 PF02595 Glycerate kinase family LQQ45_16875 PF00881 Nitroreductase family LQQ45_16910 PF00975 Thioesterase domain LQQ45_16910 PF00550 Phosphopantetheine attachment site LQQ45_16910 PF00501 AMP-binding enzyme LQQ45_16910 PF00668 Condensation domain LQQ45_16910 PF13193 AMP-binding enzyme C-terminal domain LQQ45_16925 PF01272 Transcription elongation factor, GreA/GreB, C-term LQQ45_16925 PF03449 Transcription elongation factor, N-terminal LQQ45_16930 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQQ45_16930 PF01464 Transglycosylase SLT domain LQQ45_16940 PF01171 PP-loop family LQQ45_16945 PF01464 Transglycosylase SLT domain LQQ45_16950 PF01435 Peptidase family M48 LQQ45_16960 PF00873 AcrB/AcrD/AcrF family LQQ45_16965 PF03009 Glycerophosphoryl diester phosphodiesterase family LQQ45_16970 PF00753 Metallo-beta-lactamase superfamily LQQ45_16975 PF01219 Prokaryotic diacylglycerol kinase LQQ45_16980 PF00118 TCP-1/cpn60 chaperonin family LQQ45_16985 PF00166 Chaperonin 10 Kd subunit LQQ45_16995 PF00149 Calcineurin-like phosphoesterase LQQ45_17000 PF00781 Diacylglycerol kinase catalytic domain LQQ45_17005 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LQQ45_17005 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LQQ45_17010 PF01266 FAD dependent oxidoreductase LQQ45_17010 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LQQ45_17015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LQQ45_17015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LQQ45_17020 PF00083 Sugar (and other) transporter LQQ45_17035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LQQ45_17035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LQQ45_17050 PF09423 PhoD-like phosphatase LQQ45_17050 PF16655 PhoD-like phosphatase, N-terminal domain LQQ45_17070 PF00809 Pterin binding enzyme LQQ45_17075 PF06480 FtsH Extracellular LQQ45_17075 PF01434 Peptidase family M41 LQQ45_17075 PF00004 ATPase family associated with various cellular activities (AAA) LQQ45_17075 PF17862 AAA+ lid domain LQQ45_17080 PF01728 FtsJ-like methyltransferase LQQ45_17085 PF01985 CRS1 / YhbY (CRM) domain LQQ45_17100 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LQQ45_17100 PF00117 Glutamine amidotransferase class-I LQQ45_17105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQQ45_17105 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LQQ45_17105 PF02142 MGS-like domain LQQ45_17110 PF01272 Transcription elongation factor, GreA/GreB, C-term LQQ45_17110 PF03449 Transcription elongation factor, N-terminal LQQ45_17115 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_17120 PF00582 Universal stress protein family LQQ45_17125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LQQ45_17135 PF09587 Bacterial capsule synthesis protein PGA_cap LQQ45_17150 PF00999 Sodium/hydrogen exchanger family LQQ45_17155 PF04228 Putative neutral zinc metallopeptidase LQQ45_17160 PF05661 Protein of unknown function (DUF808) LQQ45_17165 PF00579 tRNA synthetases class I (W and Y) LQQ45_17180 PF02629 CoA binding domain LQQ45_17180 PF00549 CoA-ligase LQQ45_17185 PF08442 ATP-grasp domain LQQ45_17185 PF00549 CoA-ligase LQQ45_17190 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_17190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LQQ45_17195 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LQQ45_17195 PF00364 Biotin-requiring enzyme LQQ45_17195 PF02817 e3 binding domain LQQ45_17200 PF16078 2-oxoglutarate dehydrogenase N-terminus LQQ45_17200 PF00676 Dehydrogenase E1 component LQQ45_17200 PF16870 2-oxoglutarate dehydrogenase C-terminal LQQ45_17200 PF02779 Transketolase, pyrimidine binding domain LQQ45_17215 PF13085 2Fe-2S iron-sulfur cluster binding domain LQQ45_17220 PF02910 Fumarate reductase flavoprotein C-term LQQ45_17220 PF00890 FAD binding domain LQQ45_17225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LQQ45_17230 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LQQ45_17235 PF00285 Citrate synthase, C-terminal domain LQQ45_17245 PF00581 Rhodanese-like domain LQQ45_17245 PF17773 UPF0176 acylphosphatase like domain LQQ45_17260 PF04539 Sigma-70 region 3 LQQ45_17260 PF04546 Sigma-70, non-essential region LQQ45_17260 PF03979 Sigma-70 factor, region 1.1 LQQ45_17260 PF00140 Sigma-70 factor, region 1.2 LQQ45_17260 PF04542 Sigma-70 region 2 LQQ45_17260 PF04545 Sigma-70, region 4 LQQ45_17265 PF04359 Protein of unknown function (DUF493) LQQ45_17270 PF03099 Biotin/lipoate A/B protein ligase family LQQ45_17280 PF00465 Iron-containing alcohol dehydrogenase LQQ45_17285 PF13520 Amino acid permease LQQ45_17290 PF03358 NADPH-dependent FMN reductase LQQ45_17295 PF01638 HxlR-like helix-turn-helix LQQ45_17300 PF00588 SpoU rRNA Methylase family LQQ45_17305 PF10414 Sirohaem synthase dimerisation region LQQ45_17305 PF14824 Sirohaem biosynthesis protein central LQQ45_17305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQQ45_17310 PF02403 Seryl-tRNA synthetase N-terminal domain LQQ45_17310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQQ45_17320 PF03548 Outer membrane lipoprotein carrier protein LolA LQQ45_17325 PF01016 Ribosomal L27 protein LQQ45_17330 PF00829 Ribosomal prokaryotic L21 protein LQQ45_17340 PF00348 Polyprenyl synthetase LQQ45_17350 PF01569 PAP2 superfamily LQQ45_17355 PF00529 HlyD membrane-fusion protein of T1SS LQQ45_17355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQQ45_17360 PF00873 AcrB/AcrD/AcrF family LQQ45_17365 PF02321 Outer membrane efflux protein LQQ45_17370 PF01906 Putative heavy-metal-binding LQQ45_17375 PF01906 Putative heavy-metal-binding LQQ45_17395 PF08264 Anticodon-binding domain of tRNA LQQ45_17395 PF00133 tRNA synthetases class I (I, L, M and V) LQQ45_17395 PF10458 Valyl tRNA synthetase tRNA binding arm LQQ45_17415 PF03466 LysR substrate binding domain LQQ45_17415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_17420 PF00909 Ammonium Transporter Family LQQ45_17430 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_17430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_17430 PF08521 Two-component sensor kinase N-terminal LQQ45_17435 PF00072 Response regulator receiver domain LQQ45_17435 PF00486 Transcriptional regulatory protein, C terminal LQQ45_17440 PF08019 Phosphoethanolamine transferase EptA/EptB LQQ45_17440 PF00884 Sulfatase LQQ45_17460 PF01734 Patatin-like phospholipase LQQ45_17470 PF01145 SPFH domain / Band 7 family LQQ45_17475 PF04237 YjbR LQQ45_17480 PF00348 Polyprenyl synthetase LQQ45_17485 PF04303 PrpF protein LQQ45_17490 PF00324 Amino acid permease LQQ45_17550 PF10145 Phage-related minor tail protein LQQ45_17550 PF01464 Transglycosylase SLT domain LQQ45_17550 PF01551 Peptidase family M23 LQQ45_17605 PF00574 Clp protease LQQ45_17610 PF04860 Phage portal protein LQQ45_17615 PF03354 Phage Terminase LQQ45_17670 PF05866 Endodeoxyribonuclease RusA LQQ45_17695 PF03796 DnaB-like helicase C terminal domain LQQ45_17695 PF00772 DnaB-like helicase N terminal domain LQQ45_17725 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT LQQ45_17730 PF00717 Peptidase S24-like LQQ45_17730 PF01726 LexA DNA binding domain LQQ45_17775 PF01965 DJ-1/PfpI family LQQ45_17780 PF02801 Beta-ketoacyl synthase, C-terminal domain LQQ45_17780 PF00698 Acyl transferase domain LQQ45_17780 PF09277 Erythronolide synthase, docking LQQ45_17780 PF16197 Ketoacyl-synthetase C-terminal extension LQQ45_17780 PF00109 Beta-ketoacyl synthase, N-terminal domain LQQ45_17780 PF08240 Alcohol dehydrogenase GroES-like domain LQQ45_17780 PF08990 Erythronolide synthase docking LQQ45_17780 PF14765 Polyketide synthase dehydratase LQQ45_17780 PF00550 Phosphopantetheine attachment site LQQ45_17780 PF08659 KR domain LQQ45_17785 PF06719 AraC-type transcriptional regulator N-terminus LQQ45_17785 PF12833 Helix-turn-helix domain LQQ45_17790 PF02673 Bacitracin resistance protein BacA LQQ45_17810 PF02525 Flavodoxin-like fold LQQ45_17825 PF01507 Phosphoadenosine phosphosulfate reductase family LQQ45_17830 PF06974 Protein of unknown function (DUF1298) LQQ45_17830 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LQQ45_17840 PF10150 Ribonuclease E/G family LQQ45_17840 PF00575 S1 RNA binding domain LQQ45_17845 PF02545 Maf-like protein LQQ45_17850 PF04093 rod shape-determining protein MreD LQQ45_17855 PF04085 rod shape-determining protein MreC LQQ45_17865 PF02686 Glu-tRNAGln amidotransferase C subunit LQQ45_17870 PF01425 Amidase LQQ45_17875 PF02637 GatB domain LQQ45_17875 PF02934 GatB/GatE catalytic domain LQQ45_17900 PF05992 SbmA/BacA-like family LQQ45_17905 PF13291 ACT domain LQQ45_17905 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_17910 PF01734 Patatin-like phospholipase LQQ45_17915 PF01235 Sodium:alanine symporter family LQQ45_17930 PF00881 Nitroreductase family LQQ45_17935 PF07690 Major Facilitator Superfamily LQQ45_17940 PF12805 FUSC-like inner membrane protein yccS LQQ45_17950 PF00175 Oxidoreductase NAD-binding domain LQQ45_17950 PF00667 FAD binding domain LQQ45_17950 PF00258 Flavodoxin LQQ45_17990 PF03734 L,D-transpeptidase catalytic domain LQQ45_17990 PF17969 L,D-transpeptidase C-terminal domain LQQ45_17995 PF04304 Protein of unknown function (DUF454) LQQ45_18005 PF08085 Entericidin EcnA/B family LQQ45_18010 PF07687 Peptidase dimerisation domain LQQ45_18010 PF01546 Peptidase family M20/M25/M40 LQQ45_18020 PF04055 Radical SAM superfamily LQQ45_18020 PF06969 HemN C-terminal domain LQQ45_18030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_18030 PF01584 CheW-like domain LQQ45_18030 PF01627 Hpt domain LQQ45_18030 PF00072 Response regulator receiver domain LQQ45_18035 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LQQ45_18035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQQ45_18040 PF01584 CheW-like domain LQQ45_18045 PF00072 Response regulator receiver domain LQQ45_18050 PF00072 Response regulator receiver domain LQQ45_18065 PF00873 AcrB/AcrD/AcrF family LQQ45_18070 PF03129 Anticodon binding domain LQQ45_18070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQQ45_18070 PF04073 Aminoacyl-tRNA editing domain LQQ45_18075 PF07411 Domain of unknown function (DUF1508) LQQ45_18080 PF08274 PhnA Zinc-Ribbon LQQ45_18080 PF03831 PhnA domain LQQ45_18085 PF04343 Protein of unknown function, DUF488 LQQ45_18095 PF01571 Aminomethyltransferase folate-binding domain LQQ45_18100 PF10411 Disulfide bond isomerase protein N-terminus LQQ45_18100 PF13098 Thioredoxin-like domain LQQ45_18110 PF03547 Membrane transport protein LQQ45_18115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQQ45_18120 PF00593 TonB dependent receptor LQQ45_18120 PF07715 TonB-dependent Receptor Plug Domain LQQ45_18125 PF02245 Methylpurine-DNA glycosylase (MPG) LQQ45_18130 PF06827 Zinc finger found in FPG and IleRS LQQ45_18130 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LQQ45_18130 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LQQ45_18145 PF01741 Large-conductance mechanosensitive channel, MscL LQQ45_18150 PF00009 Elongation factor Tu GTP binding domain LQQ45_18150 PF00679 Elongation factor G C-terminus LQQ45_18150 PF03144 Elongation factor Tu domain 2 LQQ45_18155 PF00860 Permease family LQQ45_18160 PF08468 Methyltransferase small domain N-terminal LQQ45_18160 PF05175 Methyltransferase small domain LQQ45_18165 PF00324 Amino acid permease LQQ45_18170 PF01139 tRNA-splicing ligase RtcB LQQ45_18180 PF00691 OmpA family LQQ45_18180 PF13505 Outer membrane protein beta-barrel domain LQQ45_18200 PF00893 Small Multidrug Resistance protein LQQ45_18210 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LQQ45_18210 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQQ45_18215 PF01011 PQQ enzyme repeat LQQ45_18220 PF04966 Carbohydrate-selective porin, OprB family LQQ45_18225 PF02515 CoA-transferase family III LQQ45_18230 PF02311 AraC-like ligand binding domain LQQ45_18230 PF12833 Helix-turn-helix domain LQQ45_18235 PF02803 Thiolase, C-terminal domain LQQ45_18235 PF00108 Thiolase, N-terminal domain LQQ45_18240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQQ45_18240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQQ45_18240 PF00378 Enoyl-CoA hydratase/isomerase LQQ45_18255 PF13673 Acetyltransferase (GNAT) domain LQQ45_18265 PF03006 Haemolysin-III related LQQ45_18270 PF00083 Sugar (and other) transporter LQQ45_18270 PF07690 Major Facilitator Superfamily LQQ45_18280 PF07516 SecA Wing and Scaffold domain LQQ45_18280 PF02810 SEC-C motif LQQ45_18280 PF01043 SecA preprotein cross-linking domain LQQ45_18280 PF07517 SecA DEAD-like domain LQQ45_18285 PF10417 C-terminal domain of 1-Cys peroxiredoxin LQQ45_18285 PF00578 AhpC/TSA family LQQ45_18290 PF00753 Metallo-beta-lactamase superfamily LQQ45_18305 PF02875 Mur ligase family, glutamate ligase domain LQQ45_18305 PF08245 Mur ligase middle domain LQQ45_18310 PF01039 Carboxyl transferase domain LQQ45_18315 PF00290 Tryptophan synthase alpha chain LQQ45_18340 PF00291 Pyridoxal-phosphate dependent enzyme LQQ45_18345 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LQQ45_18350 PF07715 TonB-dependent Receptor Plug Domain LQQ45_18350 PF00593 TonB dependent receptor LQQ45_18355 PF01923 Cobalamin adenosyltransferase LQQ45_18375 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LQQ45_18380 PF00486 Transcriptional regulatory protein, C terminal LQQ45_18380 PF00072 Response regulator receiver domain LQQ45_18385 PF00672 HAMP domain LQQ45_18385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_18385 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_18395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_18395 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_18395 PF12806 Acetyl-CoA dehydrogenase C-terminal like LQQ45_18395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_18400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_18400 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_18400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_18400 PF12806 Acetyl-CoA dehydrogenase C-terminal like LQQ45_18405 PF06146 Phosphate-starvation-inducible E LQQ45_18425 PF07715 TonB-dependent Receptor Plug Domain LQQ45_18425 PF00593 TonB dependent receptor LQQ45_18435 PF02938 GAD domain LQQ45_18435 PF00152 tRNA synthetases class II (D, K and N) LQQ45_18435 PF01336 OB-fold nucleic acid binding domain LQQ45_18440 PF11380 Stealth protein CR2, conserved region 2 LQQ45_18440 PF17101 Stealth protein CR1, conserved region 1 LQQ45_18440 PF17102 Stealth protein CR3, conserved region 3 LQQ45_18465 PF13439 Glycosyltransferase Family 4 LQQ45_18465 PF00534 Glycosyl transferases group 1 LQQ45_18470 PF00535 Glycosyl transferase family 2 LQQ45_18475 PF01522 Polysaccharide deacetylase LQQ45_18490 PF01063 Amino-transferase class IV LQQ45_18495 PF08335 GlnD PII-uridylyltransferase LQQ45_18495 PF03710 Glutamate-ammonia ligase adenylyltransferase LQQ45_18500 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_18500 PF07689 KaiB domain LQQ45_18500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_18510 PF02547 Queuosine biosynthesis protein LQQ45_18525 PF01702 Queuine tRNA-ribosyltransferase LQQ45_18530 PF02699 Preprotein translocase subunit LQQ45_18535 PF07549 SecD/SecF GG Motif LQQ45_18535 PF13721 SecD export protein N-terminal TM region LQQ45_18535 PF02355 Protein export membrane protein LQQ45_18540 PF07549 SecD/SecF GG Motif LQQ45_18540 PF02355 Protein export membrane protein LQQ45_18545 PF02441 Flavoprotein LQQ45_18545 PF04127 DNA / pantothenate metabolism flavoprotein LQQ45_18550 PF04002 RadC-like JAB domain LQQ45_18555 PF01062 Bestrophin, RFP-TM, chloride channel LQQ45_18560 PF02811 PHP domain LQQ45_18565 PF04279 Intracellular septation protein A LQQ45_18570 PF03795 YCII-related domain LQQ45_18580 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LQQ45_18580 PF01266 FAD dependent oxidoreductase LQQ45_18590 PF04461 Protein of unknown function (DUF520) LQQ45_18600 PF03061 Thioesterase superfamily LQQ45_18605 PF00085 Thioredoxin LQQ45_18610 PF00561 alpha/beta hydrolase fold LQQ45_18615 PF04273 Putative phosphatase (DUF442) LQQ45_18615 PF00753 Metallo-beta-lactamase superfamily LQQ45_18625 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_18625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LQQ45_18660 PF17152 Periplasmic sensor domain LQQ45_18660 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_18665 PF01389 OmpA-like transmembrane domain LQQ45_18665 PF00691 OmpA family LQQ45_18670 PF00149 Calcineurin-like phosphoesterase LQQ45_18670 PF10518 TAT (twin-arginine translocation) pathway signal sequence LQQ45_18675 PF13091 PLD-like domain LQQ45_18685 PF01926 50S ribosome-binding GTPase LQQ45_18685 PF16360 GTP-binding GTPase Middle Region LQQ45_18685 PF13167 GTP-binding GTPase N-terminal LQQ45_18705 PF00149 Calcineurin-like phosphoesterase LQQ45_18710 PF00398 Ribosomal RNA adenine dimethylase LQQ45_18715 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LQQ45_18720 PF00572 Ribosomal protein L13 LQQ45_18725 PF00380 Ribosomal protein S9/S16 LQQ45_18730 PF00043 Glutathione S-transferase, C-terminal domain LQQ45_18730 PF13417 Glutathione S-transferase, N-terminal domain LQQ45_18735 PF04386 Stringent starvation protein B LQQ45_18745 PF00364 Biotin-requiring enzyme LQQ45_18745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQQ45_18745 PF00289 Biotin carboxylase, N-terminal domain LQQ45_18745 PF02785 Biotin carboxylase C-terminal domain LQQ45_18755 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_18755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_18755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_18760 PF01039 Carboxyl transferase domain LQQ45_18775 PF17932 Tetracyclin repressor-like, C-terminal domain LQQ45_18775 PF00440 Bacterial regulatory proteins, tetR family LQQ45_18780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_18780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_18780 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_18825 PF01066 CDP-alcohol phosphatidyltransferase LQQ45_18830 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LQQ45_18850 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LQQ45_18850 PF00056 lactate/malate dehydrogenase, NAD binding domain LQQ45_18860 PF10145 Phage-related minor tail protein LQQ45_18860 PF01551 Peptidase family M23 LQQ45_18860 PF01464 Transglycosylase SLT domain LQQ45_18865 PF04055 Radical SAM superfamily LQQ45_18865 PF01938 TRAM domain LQQ45_18865 PF00919 Uncharacterized protein family UPF0004 LQQ45_18870 PF02562 PhoH-like protein LQQ45_18875 PF02130 Uncharacterized protein family UPF0054 LQQ45_18900 PF03358 NADPH-dependent FMN reductase LQQ45_18905 PF03631 Virulence factor BrkB LQQ45_18910 PF00892 EamA-like transporter family LQQ45_18915 PF12833 Helix-turn-helix domain LQQ45_18920 PF01557 Fumarylacetoacetate (FAA) hydrolase family LQQ45_18965 PF17876 Cold shock domain LQQ45_18965 PF00773 RNB domain LQQ45_18965 PF00575 S1 RNA binding domain LQQ45_18965 PF08461 Ribonuclease R winged-helix domain LQQ45_18965 PF08206 Ribonuclease B OB domain LQQ45_18970 PF01432 Peptidase family M3 LQQ45_18975 PF09526 Probable metal-binding protein (DUF2387) LQQ45_19005 PF03937 Flavinator of succinate dehydrogenase LQQ45_19010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_19010 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_19010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_19015 PF00743 Flavin-binding monooxygenase-like LQQ45_19020 PF01196 Ribosomal protein L17 LQQ45_19025 PF01000 RNA polymerase Rpb3/RpoA insert domain LQQ45_19025 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LQQ45_19025 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LQQ45_19030 PF00163 Ribosomal protein S4/S9 N-terminal domain LQQ45_19030 PF01479 S4 domain LQQ45_19035 PF00411 Ribosomal protein S11 LQQ45_19040 PF00416 Ribosomal protein S13/S18 LQQ45_19045 PF00444 Ribosomal protein L36 LQQ45_19050 PF00344 SecY translocase LQQ45_19055 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LQQ45_19060 PF00327 Ribosomal protein L30p/L7e LQQ45_19065 PF00333 Ribosomal protein S5, N-terminal domain LQQ45_19065 PF03719 Ribosomal protein S5, C-terminal domain LQQ45_19070 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LQQ45_19075 PF00347 Ribosomal protein L6 LQQ45_19080 PF00410 Ribosomal protein S8 LQQ45_19085 PF00253 Ribosomal protein S14p/S29e LQQ45_19090 PF00281 Ribosomal protein L5 LQQ45_19090 PF00673 ribosomal L5P family C-terminus LQQ45_19095 PF00467 KOW motif LQQ45_19095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LQQ45_19100 PF00238 Ribosomal protein L14p/L23e LQQ45_19105 PF00366 Ribosomal protein S17 LQQ45_19110 PF00831 Ribosomal L29 protein LQQ45_19115 PF00252 Ribosomal protein L16p/L10e LQQ45_19125 PF00237 Ribosomal protein L22p/L17e LQQ45_19130 PF00203 Ribosomal protein S19 LQQ45_19135 PF00181 Ribosomal Proteins L2, RNA binding domain LQQ45_19135 PF03947 Ribosomal Proteins L2, C-terminal domain LQQ45_19140 PF00276 Ribosomal protein L23 LQQ45_19145 PF00573 Ribosomal protein L4/L1 family LQQ45_19150 PF00297 Ribosomal protein L3 LQQ45_19155 PF00338 Ribosomal protein S10p/S20e LQQ45_19160 PF00117 Glutamine amidotransferase class-I LQQ45_19165 PF01053 Cys/Met metabolism PLP-dependent enzyme LQQ45_19170 PF05872 Bacterial protein of unknown function (DUF853) LQQ45_19175 PF00970 Oxidoreductase FAD-binding domain LQQ45_19175 PF00042 Globin LQQ45_19175 PF00175 Oxidoreductase NAD-binding domain LQQ45_19180 PF02082 Transcriptional regulator LQQ45_19185 PF01926 50S ribosome-binding GTPase LQQ45_19195 PF00375 Sodium:dicarboxylate symporter family LQQ45_19205 PF01553 Acyltransferase LQQ45_19220 PF00270 DEAD/DEAH box helicase LQQ45_19220 PF00271 Helicase conserved C-terminal domain LQQ45_19220 PF17191 RecG wedge domain LQQ45_19225 PF00156 Phosphoribosyl transferase domain LQQ45_19230 PF00293 NUDIX domain LQQ45_19235 PF03641 Possible lysine decarboxylase LQQ45_19240 PF01544 CorA-like Mg2+ transporter protein LQQ45_19250 PF05494 MlaC protein LQQ45_19260 PF02405 Permease MlaE LQQ45_19265 PF00005 ABC transporter LQQ45_19275 PF03880 DbpA RNA binding domain LQQ45_19275 PF00270 DEAD/DEAH box helicase LQQ45_19275 PF12343 Cold shock protein DEAD box A LQQ45_19275 PF00271 Helicase conserved C-terminal domain LQQ45_19280 PF00459 Inositol monophosphatase family LQQ45_19285 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LQQ45_19285 PF02779 Transketolase, pyrimidine binding domain LQQ45_19285 PF02780 Transketolase, C-terminal domain LQQ45_19290 PF00925 GTP cyclohydrolase II LQQ45_19295 PF01218 Coproporphyrinogen III oxidase LQQ45_19300 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LQQ45_19300 PF01488 Shikimate / quinate 5-dehydrogenase LQQ45_19300 PF08501 Shikimate dehydrogenase substrate binding domain LQQ45_19310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQQ45_19310 PF02770 Acyl-CoA dehydrogenase, middle domain LQQ45_19310 PF12806 Acetyl-CoA dehydrogenase C-terminal like LQQ45_19310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQQ45_19320 PF04024 PspC domain LQQ45_19325 PF00571 CBS domain LQQ45_19340 PF07690 Major Facilitator Superfamily LQQ45_19345 PF02091 Glycyl-tRNA synthetase alpha subunit LQQ45_19350 PF05746 DALR anticodon binding domain LQQ45_19350 PF02092 Glycyl-tRNA synthetase beta subunit LQQ45_19370 PF00892 EamA-like transporter family LQQ45_19375 PF03466 LysR substrate binding domain LQQ45_19375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_19390 PF05922 Peptidase inhibitor I9 LQQ45_19390 PF00082 Subtilase family LQQ45_19405 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LQQ45_19410 PF04996 Succinylarginine dihydrolase LQQ45_19415 PF00171 Aldehyde dehydrogenase family LQQ45_19420 PF04958 Arginine N-succinyltransferase beta subunit LQQ45_19425 PF00202 Aminotransferase class-III LQQ45_19430 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LQQ45_19430 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LQQ45_19435 PF00324 Amino acid permease LQQ45_19445 PF08241 Methyltransferase domain LQQ45_19465 PF13614 AAA domain LQQ45_19470 PF01594 AI-2E family transporter LQQ45_19475 PF00080 Copper/zinc superoxide dismutase (SODC) LQQ45_19480 PF12805 FUSC-like inner membrane protein yccS LQQ45_19485 PF07690 Major Facilitator Superfamily LQQ45_19495 PF02525 Flavodoxin-like fold LQQ45_19500 PF03992 Antibiotic biosynthesis monooxygenase LQQ45_19510 PF01565 FAD binding domain LQQ45_19510 PF02913 FAD linked oxidases, C-terminal domain LQQ45_19515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LQQ45_19515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LQQ45_19520 PF00892 EamA-like transporter family LQQ45_19525 PF00892 EamA-like transporter family LQQ45_19535 PF01925 Sulfite exporter TauE/SafE LQQ45_19540 PF09157 Pseudouridine synthase II TruB, C-terminal LQQ45_19540 PF16198 tRNA pseudouridylate synthase B C-terminal domain LQQ45_19540 PF01509 TruB family pseudouridylate synthase (N terminal domain) LQQ45_19545 PF03280 Proteobacterial lipase chaperone protein LQQ45_19550 PF00561 alpha/beta hydrolase fold LQQ45_19555 PF01245 Ribosomal protein L19 LQQ45_19560 PF01746 tRNA (Guanine-1)-methyltransferase LQQ45_19565 PF01782 RimM N-terminal domain LQQ45_19565 PF05239 PRC-barrel domain LQQ45_19570 PF00886 Ribosomal protein S16 LQQ45_19610 PF02401 LytB protein LQQ45_19615 PF00625 Guanylate kinase LQQ45_19620 PF01192 RNA polymerase Rpb6 LQQ45_19630 PF04607 Region found in RelA / SpoT proteins LQQ45_19630 PF13291 ACT domain LQQ45_19630 PF02824 TGS domain LQQ45_19635 PF01042 Endoribonuclease L-PSP LQQ45_19640 PF04324 BFD-like [2Fe-2S] binding domain LQQ45_19645 PF00210 Ferritin-like domain LQQ45_19650 PF15864 Protein glycosylation ligase LQQ45_19650 PF04932 O-Antigen ligase LQQ45_19650 PF11846 Virulence factor membrane-bound polymerase, C-terminal LQQ45_19655 PF07963 Prokaryotic N-terminal methylation motif LQQ45_19655 PF00114 Pilin (bacterial filament) LQQ45_19665 PF04536 TPM domain LQQ45_19670 PF04011 LemA family LQQ45_19680 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQQ45_19680 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LQQ45_19685 PF00310 Glutamine amidotransferases class-II LQQ45_19685 PF04898 Glutamate synthase central domain LQQ45_19685 PF01645 Conserved region in glutamate synthase LQQ45_19685 PF01493 GXGXG motif LQQ45_19695 PF01761 3-dehydroquinate synthase LQQ45_19700 PF01202 Shikimate kinase LQQ45_19705 PF07660 Secretin and TonB N terminus short domain LQQ45_19705 PF03958 Bacterial type II/III secretion system short domain LQQ45_19705 PF00263 Bacterial type II and III secretion system protein LQQ45_19705 PF11741 AMIN domain LQQ45_19715 PF04350 Pilus assembly protein, PilO LQQ45_19720 PF05137 Fimbrial assembly protein (PilN) LQQ45_19725 PF11104 Type IV pilus assembly protein PilM; LQQ45_19730 PF00905 Penicillin binding protein transpeptidase domain LQQ45_19730 PF17092 Penicillin-binding protein OB-like domain LQQ45_19730 PF00912 Transglycosylase LQQ45_19735 PF13847 Methyltransferase domain LQQ45_19745 PF00953 Glycosyl transferase family 4 LQQ45_19750 PF08245 Mur ligase middle domain LQQ45_19750 PF01225 Mur ligase family, catalytic domain LQQ45_19750 PF02875 Mur ligase family, glutamate ligase domain LQQ45_19755 PF01225 Mur ligase family, catalytic domain LQQ45_19755 PF08245 Mur ligase middle domain LQQ45_19755 PF02875 Mur ligase family, glutamate ligase domain LQQ45_19760 PF00905 Penicillin binding protein transpeptidase domain LQQ45_19760 PF03717 Penicillin-binding Protein dimerisation domain LQQ45_19770 PF01795 MraW methylase family LQQ45_19785 PF00749 tRNA synthetases class I (E and Q), catalytic domain LQQ45_19800 PF00324 Amino acid permease LQQ45_19830 PF01545 Cation efflux family LQQ45_19835 PF00873 AcrB/AcrD/AcrF family LQQ45_19840 PF00529 HlyD membrane-fusion protein of T1SS LQQ45_19840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQQ45_19865 PF00005 ABC transporter LQQ45_19865 PF12848 ABC transporter LQQ45_19870 PF01053 Cys/Met metabolism PLP-dependent enzyme LQQ45_19875 PF00106 short chain dehydrogenase LQQ45_19880 PF01740 STAS domain LQQ45_19880 PF00916 Sulfate permease family LQQ45_19885 PF09371 Tex-like protein N-terminal domain LQQ45_19885 PF17674 HHH domain LQQ45_19885 PF00575 S1 RNA binding domain LQQ45_19885 PF16921 Tex protein YqgF-like domain LQQ45_19890 PF00072 Response regulator receiver domain LQQ45_19890 PF00486 Transcriptional regulatory protein, C terminal LQQ45_19895 PF00672 HAMP domain LQQ45_19895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_19895 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_19905 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LQQ45_19905 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LQQ45_19910 PF00583 Acetyltransferase (GNAT) family LQQ45_19930 PF00475 Imidazoleglycerol-phosphate dehydratase LQQ45_19935 PF00117 Glutamine amidotransferase class-I LQQ45_19950 PF00977 Histidine biosynthesis protein LQQ45_19975 PF01636 Phosphotransferase enzyme family LQQ45_19980 PF00977 Histidine biosynthesis protein LQQ45_19995 PF00230 Major intrinsic protein LQQ45_20025 PF02705 K+ potassium transporter LQQ45_20035 PF13302 Acetyltransferase (GNAT) domain LQQ45_20045 PF02525 Flavodoxin-like fold LQQ45_20050 PF01638 HxlR-like helix-turn-helix LQQ45_20065 PF01638 HxlR-like helix-turn-helix LQQ45_20080 PF02311 AraC-like ligand binding domain LQQ45_20080 PF12833 Helix-turn-helix domain LQQ45_20085 PF00248 Aldo/keto reductase family LQQ45_20105 PF03466 LysR substrate binding domain LQQ45_20105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_20110 PF07690 Major Facilitator Superfamily LQQ45_20130 PF01593 Flavin containing amine oxidoreductase LQQ45_20135 PF02678 Pirin LQQ45_20135 PF05726 Pirin C-terminal cupin domain LQQ45_20140 PF00857 Isochorismatase family LQQ45_20145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_20150 PF00171 Aldehyde dehydrogenase family LQQ45_20155 PF00202 Aminotransferase class-III LQQ45_20160 PF00155 Aminotransferase class I and II LQQ45_20160 PF00392 Bacterial regulatory proteins, gntR family LQQ45_20165 PF00324 Amino acid permease LQQ45_20175 PF03591 AzlC protein LQQ45_20185 PF00436 Single-strand binding protein family LQQ45_20190 PF07690 Major Facilitator Superfamily LQQ45_20200 PF02581 Thiamine monophosphate synthase LQQ45_20200 PF03070 TENA/THI-4/PQQC family LQQ45_20200 PF08543 Phosphomethylpyrimidine kinase LQQ45_20205 PF06942 GlpM protein LQQ45_20215 PF08240 Alcohol dehydrogenase GroES-like domain LQQ45_20215 PF00107 Zinc-binding dehydrogenase LQQ45_20220 PF16925 Tetracyclin repressor-like, C-terminal domain LQQ45_20220 PF00440 Bacterial regulatory proteins, tetR family LQQ45_20225 PF00005 ABC transporter LQQ45_20225 PF17760 UvrA interaction domain LQQ45_20225 PF17755 UvrA DNA-binding domain LQQ45_20230 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_20240 PF02028 BCCT, betaine/carnitine/choline family transporter LQQ45_20250 PF00474 Sodium:solute symporter family LQQ45_20255 PF04341 Protein of unknown function, DUF485 LQQ45_20260 PF00672 HAMP domain LQQ45_20260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_20260 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_20260 PF01627 Hpt domain LQQ45_20260 PF00072 Response regulator receiver domain LQQ45_20270 PF00196 Bacterial regulatory proteins, luxR family LQQ45_20270 PF00072 Response regulator receiver domain LQQ45_20275 PF03358 NADPH-dependent FMN reductase LQQ45_20280 PF00296 Luciferase-like monooxygenase LQQ45_20285 PF01037 Lrp/AsnC ligand binding domain LQQ45_20290 PF00857 Isochorismatase family LQQ45_20295 PF13193 AMP-binding enzyme C-terminal domain LQQ45_20295 PF00501 AMP-binding enzyme LQQ45_20295 PF16177 Acetyl-coenzyme A synthetase N-terminus LQQ45_20305 PF00924 Mechanosensitive ion channel LQQ45_20310 PF04452 RNA methyltransferase LQQ45_20315 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LQQ45_20320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQQ45_20340 PF01368 DHH family LQQ45_20340 PF17768 RecJ OB domain LQQ45_20340 PF02272 DHHA1 domain LQQ45_20345 PF01243 Pyridoxamine 5'-phosphate oxidase LQQ45_20345 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LQQ45_20350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LQQ45_20350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LQQ45_20350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LQQ45_20350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LQQ45_20355 PF00478 IMP dehydrogenase / GMP reductase domain LQQ45_20355 PF00571 CBS domain LQQ45_20360 PF03692 Putative zinc- or iron-chelating domain LQQ45_20365 PF00258 Flavodoxin LQQ45_20365 PF01613 Flavin reductase like domain LQQ45_20370 PF07715 TonB-dependent Receptor Plug Domain LQQ45_20370 PF00593 TonB dependent receptor LQQ45_20375 PF01169 Uncharacterized protein family UPF0016 LQQ45_20385 PF00364 Biotin-requiring enzyme LQQ45_20385 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LQQ45_20385 PF02817 e3 binding domain LQQ45_20390 PF00456 Transketolase, thiamine diphosphate binding domain LQQ45_20390 PF17831 Pyruvate dehydrogenase E1 component middle domain LQQ45_20395 PF01551 Peptidase family M23 LQQ45_20405 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LQQ45_20410 PF12327 FtsZ family, C-terminal domain LQQ45_20410 PF00091 Tubulin/FtsZ family, GTPase domain LQQ45_20415 PF02491 SHS2 domain inserted in FTSA LQQ45_20420 PF03799 Cell division protein FtsQ LQQ45_20420 PF08478 POTRA domain, FtsQ-type LQQ45_20425 PF07478 D-ala D-ala ligase C-terminus LQQ45_20425 PF01820 D-ala D-ala ligase N-terminus LQQ45_20430 PF01225 Mur ligase family, catalytic domain LQQ45_20430 PF02875 Mur ligase family, glutamate ligase domain LQQ45_20430 PF08245 Mur ligase middle domain LQQ45_20435 PF03033 Glycosyltransferase family 28 N-terminal domain LQQ45_20435 PF04101 Glycosyltransferase family 28 C-terminal domain LQQ45_20440 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LQQ45_20440 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LQQ45_20450 PF07715 TonB-dependent Receptor Plug Domain LQQ45_20450 PF00593 TonB dependent receptor LQQ45_20455 PF00156 Phosphoribosyl transferase domain LQQ45_20460 PF03372 Endonuclease/Exonuclease/phosphatase family LQQ45_20465 PF03960 ArsC family LQQ45_20475 PF07859 alpha/beta hydrolase fold LQQ45_20480 PF07694 5TMR of 5TMR-LYT LQQ45_20480 PF00990 Diguanylate cyclase, GGDEF domain LQQ45_20485 PF11412 Disulphide bond corrector protein DsbC LQQ45_20485 PF02683 Cytochrome C biogenesis protein transmembrane region LQQ45_20515 PF00576 HIUase/Transthyretin family LQQ45_20520 PF00860 Permease family LQQ45_20530 PF01494 FAD binding domain LQQ45_20535 PF03561 Allantoicase repeat LQQ45_20540 PF04115 Ureidoglycolate lyase LQQ45_20545 PF00986 DNA gyrase B subunit, carboxyl terminus LQQ45_20545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_20545 PF01751 Toprim domain LQQ45_20545 PF00204 DNA gyrase B LQQ45_20550 PF05728 Uncharacterised protein family (UPF0227) LQQ45_20580 PF01510 N-acetylmuramoyl-L-alanine amidase LQQ45_20580 PF01476 LysM domain LQQ45_20580 PF01471 Putative peptidoglycan binding domain LQQ45_20585 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LQQ45_20585 PF04717 Type VI secretion system, phage-baseplate injector LQQ45_20585 PF13296 Putative type VI secretion system Rhs element Vgr LQQ45_20590 PF02600 Disulfide bond formation protein DsbB LQQ45_20595 PF04262 Glutamate-cysteine ligase LQQ45_20610 PF04286 Protein of unknown function (DUF445) LQQ45_20615 PF00155 Aminotransferase class I and II LQQ45_20620 PF01554 MatE LQQ45_20625 PF00106 short chain dehydrogenase LQQ45_20635 PF00072 Response regulator receiver domain LQQ45_20635 PF00486 Transcriptional regulatory protein, C terminal LQQ45_20640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQQ45_20640 PF00512 His Kinase A (phospho-acceptor) domain LQQ45_20640 PF00989 PAS fold LQQ45_20640 PF11808 Phosphate regulon sensor protein PhoR LQQ45_20650 PF02666 Phosphatidylserine decarboxylase LQQ45_20655 PF00581 Rhodanese-like domain LQQ45_20660 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LQQ45_20660 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LQQ45_20665 PF02580 D-Tyr-tRNA(Tyr) deacylase LQQ45_20675 PF00905 Penicillin binding protein transpeptidase domain LQQ45_20720 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LQQ45_20720 PF00925 GTP cyclohydrolase II LQQ45_20725 PF00885 6,7-dimethyl-8-ribityllumazine synthase LQQ45_20730 PF01029 NusB family LQQ45_20735 PF00586 AIR synthase related protein, N-terminal domain LQQ45_20735 PF02769 AIR synthase related protein, C-terminal domain LQQ45_20740 PF04608 Phosphatidylglycerophosphatase A LQQ45_20745 PF00132 Bacterial transferase hexapeptide (six repeats) LQQ45_20745 PF12804 MobA-like NTP transferase domain LQQ45_20745 PF14602 Hexapeptide repeat of succinyl-transferase LQQ45_20750 PF01380 SIS domain LQQ45_20755 PF08722 TnsA endonuclease N terminal LQQ45_20755 PF08721 TnsA endonuclease C terminal LQQ45_20760 PF00665 Integrase core domain LQQ45_20765 PF11426 Tn7 transposition regulator TnsC LQQ45_20765 PF13401 AAA domain LQQ45_20770 PF15978 Tn7-like transposition protein D LQQ45_20770 PF06527 TniQ LQQ45_20775 PF18623 TnsE C-terminal domain LQQ45_20805 PF00583 Acetyltransferase (GNAT) family LQQ45_20810 PF00186 Dihydrofolate reductase LQQ45_20825 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase LQQ45_20845 PF00440 Bacterial regulatory proteins, tetR family LQQ45_20845 PF02909 Tetracyclin repressor-like, C-terminal domain LQQ45_20850 PF07690 Major Facilitator Superfamily LQQ45_20855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LQQ45_20855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LQQ45_20855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LQQ45_20855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LQQ45_20860 PF00809 Pterin binding enzyme LQQ45_20875 PF00665 Integrase core domain LQQ45_20900 PF02899 Phage integrase, N-terminal SAM-like domain LQQ45_20900 PF00589 Phage integrase family LQQ45_20930 PF01740 STAS domain LQQ45_20930 PF00916 Sulfate permease family LQQ45_20935 PF00582 Universal stress protein family LQQ45_20955 PF01119 DNA mismatch repair protein, C-terminal domain LQQ45_20955 PF08676 MutL C terminal dimerisation domain LQQ45_20960 PF00145 C-5 cytosine-specific DNA methylase LQQ45_20975 PF01177 Asp/Glu/Hydantoin racemase LQQ45_20990 PF00491 Arginase family LQQ45_20995 PF01979 Amidohydrolase family LQQ45_21000 PF00324 Amino acid permease LQQ45_21005 PF00221 Aromatic amino acid lyase LQQ45_21010 PF17392 Urocanase C-terminal domain LQQ45_21010 PF17391 Urocanase N-terminal domain LQQ45_21010 PF01175 Urocanase Rossmann-like domain LQQ45_21015 PF05962 HutD LQQ45_21020 PF00392 Bacterial regulatory proteins, gntR family LQQ45_21020 PF07702 UTRA domain LQQ45_21030 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQQ45_21030 PF07683 Cobalamin synthesis protein cobW C-terminal domain LQQ45_21040 PF00324 Amino acid permease LQQ45_21050 PF02798 Glutathione S-transferase, N-terminal domain LQQ45_21050 PF14497 Glutathione S-transferase, C-terminal domain LQQ45_21055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LQQ45_21065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LQQ45_21070 PF04463 Protein of unknown function (DUF523) LQQ45_21075 PF01554 MatE LQQ45_21080 PF01758 Sodium Bile acid symporter family LQQ45_21085 PF00857 Isochorismatase family LQQ45_21090 PF00701 Dihydrodipicolinate synthetase family LQQ45_21100 PF01259 SAICAR synthetase LQQ45_21110 PF01226 Formate/nitrite transporter LQQ45_21115 PF00004 ATPase family associated with various cellular activities (AAA) LQQ45_21115 PF12002 MgsA AAA+ ATPase C terminal LQQ45_21115 PF16193 AAA C-terminal domain LQQ45_21120 PF07995 Glucose / Sorbosone dehydrogenase LQQ45_21125 PF03692 Putative zinc- or iron-chelating domain LQQ45_21130 PF07043 Protein of unknown function (DUF1328) LQQ45_21145 PF14815 NUDIX domain LQQ45_21145 PF10576 Iron-sulfur binding domain of endonuclease III LQQ45_21145 PF00730 HhH-GPD superfamily base excision DNA repair protein LQQ45_21145 PF00633 Helix-hairpin-helix motif LQQ45_21160 PF03352 Methyladenine glycosylase LQQ45_21165 PF00107 Zinc-binding dehydrogenase LQQ45_21165 PF08240 Alcohol dehydrogenase GroES-like domain LQQ45_21170 PF00392 Bacterial regulatory proteins, gntR family LQQ45_21170 PF00155 Aminotransferase class I and II LQQ45_21185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_21185 PF03466 LysR substrate binding domain LQQ45_21190 PF00248 Aldo/keto reductase family LQQ45_21195 PF07690 Major Facilitator Superfamily LQQ45_21205 PF01113 Dihydrodipicolinate reductase, N-terminus LQQ45_21205 PF05173 Dihydrodipicolinate reductase, C-terminus LQQ45_21215 PF00684 DnaJ central domain LQQ45_21215 PF00226 DnaJ domain LQQ45_21215 PF01556 DnaJ C terminal domain LQQ45_21225 PF00873 AcrB/AcrD/AcrF family LQQ45_21230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQQ45_21235 PF08361 MAATS-type transcriptional repressor, C-terminal region LQQ45_21235 PF00440 Bacterial regulatory proteins, tetR family LQQ45_21240 PF00311 Phosphoenolpyruvate carboxylase LQQ45_21245 PF00860 Permease family LQQ45_21250 PF03466 LysR substrate binding domain LQQ45_21250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQQ45_21265 PF00920 Dehydratase family LQQ45_21270 PF02911 Formyl transferase, C-terminal domain LQQ45_21270 PF00551 Formyl transferase LQQ45_21275 PF01029 NusB family LQQ45_21275 PF01189 16S rRNA methyltransferase RsmB/F LQQ45_21285 PF00209 Sodium:neurotransmitter symporter family