locus-tag class description MQE20_00005 PF00308 Bacterial dnaA protein MQE20_00005 PF08299 Bacterial dnaA protein helix-turn-helix MQE20_00005 PF11638 DnaA N-terminal domain MQE20_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain MQE20_00010 PF02767 DNA polymerase III beta subunit, central domain MQE20_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain MQE20_00015 PF02463 RecF/RecN/SMC N terminal domain MQE20_00020 PF00204 DNA gyrase B MQE20_00020 PF00986 DNA gyrase B subunit, carboxyl terminus MQE20_00020 PF18053 DNA gyrase B subunit insert domain MQE20_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_00020 PF01751 Toprim domain MQE20_00030 PF09335 SNARE associated Golgi protein MQE20_00035 PF12848 ABC transporter MQE20_00035 PF00005 ABC transporter MQE20_00055 PF01521 Iron-sulphur cluster biosynthesis MQE20_00060 PF00561 alpha/beta hydrolase fold MQE20_00065 PF03702 Anhydro-N-acetylmuramic acid kinase MQE20_00070 PF00579 tRNA synthetases class I (W and Y) MQE20_00110 PF00209 Sodium:neurotransmitter symporter family MQE20_00120 PF01189 16S rRNA methyltransferase RsmB/F MQE20_00120 PF01029 NusB family MQE20_00125 PF02911 Formyl transferase, C-terminal domain MQE20_00125 PF00551 Formyl transferase MQE20_00130 PF00920 Dehydratase family MQE20_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_00145 PF03466 LysR substrate binding domain MQE20_00150 PF00860 Permease family MQE20_00155 PF00311 Phosphoenolpyruvate carboxylase MQE20_00160 PF00440 Bacterial regulatory proteins, tetR family MQE20_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region MQE20_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE20_00170 PF00873 AcrB/AcrD/AcrF family MQE20_00180 PF00226 DnaJ domain MQE20_00180 PF01556 DnaJ C terminal domain MQE20_00180 PF00684 DnaJ central domain MQE20_00190 PF05173 Dihydrodipicolinate reductase, C-terminus MQE20_00190 PF01113 Dihydrodipicolinate reductase, N-terminus MQE20_00200 PF07690 Major Facilitator Superfamily MQE20_00205 PF00248 Aldo/keto reductase family MQE20_00210 PF03466 LysR substrate binding domain MQE20_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_00225 PF00155 Aminotransferase class I and II MQE20_00225 PF00392 Bacterial regulatory proteins, gntR family MQE20_00230 PF00107 Zinc-binding dehydrogenase MQE20_00230 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_00235 PF03352 Methyladenine glycosylase MQE20_00250 PF00633 Helix-hairpin-helix motif MQE20_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein MQE20_00250 PF10576 Iron-sulfur binding domain of endonuclease III MQE20_00250 PF14815 NUDIX domain MQE20_00265 PF07043 Protein of unknown function (DUF1328) MQE20_00270 PF03692 Putative zinc- or iron-chelating domain MQE20_00275 PF07995 Glucose / Sorbosone dehydrogenase MQE20_00280 PF16193 AAA C-terminal domain MQE20_00280 PF12002 MgsA AAA+ ATPase C terminal MQE20_00280 PF00004 ATPase family associated with various cellular activities (AAA) MQE20_00285 PF01226 Formate/nitrite transporter MQE20_00295 PF01259 SAICAR synthetase MQE20_00305 PF00701 Dihydrodipicolinate synthetase family MQE20_00310 PF00857 Isochorismatase family MQE20_00315 PF01758 Sodium Bile acid symporter family MQE20_00320 PF01554 MatE MQE20_00325 PF04463 Protein of unknown function (DUF523) MQE20_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MQE20_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MQE20_00345 PF02798 Glutathione S-transferase, N-terminal domain MQE20_00345 PF14497 Glutathione S-transferase, C-terminal domain MQE20_00355 PF00324 Amino acid permease MQE20_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain MQE20_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain MQE20_00375 PF07702 UTRA domain MQE20_00375 PF00392 Bacterial regulatory proteins, gntR family MQE20_00380 PF05962 HutD MQE20_00385 PF01175 Urocanase Rossmann-like domain MQE20_00385 PF17392 Urocanase C-terminal domain MQE20_00385 PF17391 Urocanase N-terminal domain MQE20_00390 PF00221 Aromatic amino acid lyase MQE20_00395 PF00324 Amino acid permease MQE20_00400 PF01979 Amidohydrolase family MQE20_00405 PF00491 Arginase family MQE20_00420 PF01177 Asp/Glu/Hydantoin racemase MQE20_00430 PF01381 Helix-turn-helix MQE20_00445 PF00145 C-5 cytosine-specific DNA methylase MQE20_00455 PF06527 TniQ MQE20_00455 PF15978 Tn7-like transposition protein D MQE20_00460 PF13401 AAA domain MQE20_00460 PF11426 Tn7 transposition regulator TnsC MQE20_00465 PF00665 Integrase core domain MQE20_00470 PF08722 TnsA endonuclease N terminal MQE20_00470 PF08721 TnsA endonuclease C terminal MQE20_00475 PF01380 SIS domain MQE20_00480 PF12804 MobA-like NTP transferase domain MQE20_00480 PF14602 Hexapeptide repeat of succinyl-transferase MQE20_00480 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_00485 PF04608 Phosphatidylglycerophosphatase A MQE20_00490 PF00586 AIR synthase related protein, N-terminal domain MQE20_00490 PF02769 AIR synthase related protein, C-terminal domain MQE20_00495 PF01029 NusB family MQE20_00500 PF00885 6,7-dimethyl-8-ribityllumazine synthase MQE20_00505 PF00925 GTP cyclohydrolase II MQE20_00505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MQE20_00530 PF02580 D-Tyr-tRNA(Tyr) deacylase MQE20_00535 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MQE20_00535 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MQE20_00540 PF00581 Rhodanese-like domain MQE20_00545 PF02666 Phosphatidylserine decarboxylase MQE20_00550 PF03069 Acetamidase/Formamidase family MQE20_00570 PF11808 Phosphate regulon sensor protein PhoR MQE20_00570 PF00989 PAS fold MQE20_00570 PF00512 His Kinase A (phospho-acceptor) domain MQE20_00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_00575 PF00486 Transcriptional regulatory protein, C terminal MQE20_00575 PF00072 Response regulator receiver domain MQE20_00585 PF00106 short chain dehydrogenase MQE20_00590 PF01554 MatE MQE20_00595 PF00155 Aminotransferase class I and II MQE20_00600 PF04286 Protein of unknown function (DUF445) MQE20_00615 PF04262 Glutamate-cysteine ligase MQE20_00620 PF02600 Disulfide bond formation protein DsbB MQE20_00625 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) MQE20_00625 PF04717 Type VI secretion system, phage-baseplate injector MQE20_00625 PF13296 Putative type VI secretion system Rhs element Vgr MQE20_00630 PF01476 LysM domain MQE20_00630 PF00877 NlpC/P60 family MQE20_00645 PF05728 Uncharacterised protein family (UPF0227) MQE20_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_00650 PF00986 DNA gyrase B subunit, carboxyl terminus MQE20_00650 PF01751 Toprim domain MQE20_00650 PF00204 DNA gyrase B MQE20_00655 PF00106 short chain dehydrogenase MQE20_00660 PF04115 Ureidoglycolate lyase MQE20_00665 PF03561 Allantoicase repeat MQE20_00670 PF01494 FAD binding domain MQE20_00680 PF00860 Permease family MQE20_00685 PF00576 HIUase/Transthyretin family MQE20_00715 PF02683 Cytochrome C biogenesis protein transmembrane region MQE20_00715 PF11412 Disulphide bond corrector protein DsbC MQE20_00720 PF00990 Diguanylate cyclase, GGDEF domain MQE20_00720 PF07694 5TMR of 5TMR-LYT MQE20_00725 PF07859 alpha/beta hydrolase fold MQE20_00735 PF03960 ArsC family MQE20_00740 PF03372 Endonuclease/Exonuclease/phosphatase family MQE20_00745 PF00156 Phosphoribosyl transferase domain MQE20_00750 PF00593 TonB dependent receptor MQE20_00750 PF07715 TonB-dependent Receptor Plug Domain MQE20_00760 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MQE20_00760 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MQE20_00765 PF03033 Glycosyltransferase family 28 N-terminal domain MQE20_00765 PF04101 Glycosyltransferase family 28 C-terminal domain MQE20_00770 PF08245 Mur ligase middle domain MQE20_00770 PF02875 Mur ligase family, glutamate ligase domain MQE20_00770 PF01225 Mur ligase family, catalytic domain MQE20_00775 PF01820 D-ala D-ala ligase N-terminus MQE20_00775 PF07478 D-ala D-ala ligase C-terminus MQE20_00780 PF03799 Cell division protein FtsQ MQE20_00780 PF08478 POTRA domain, FtsQ-type MQE20_00785 PF02491 SHS2 domain inserted in FTSA MQE20_00790 PF00091 Tubulin/FtsZ family, GTPase domain MQE20_00790 PF12327 FtsZ family, C-terminal domain MQE20_00795 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MQE20_00805 PF01551 Peptidase family M23 MQE20_00810 PF00456 Transketolase, thiamine diphosphate binding domain MQE20_00810 PF17831 Pyruvate dehydrogenase E1 component middle domain MQE20_00815 PF02817 e3 binding domain MQE20_00815 PF00364 Biotin-requiring enzyme MQE20_00815 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MQE20_00825 PF01169 Uncharacterized protein family UPF0016 MQE20_00845 PF01613 Flavin reductase like domain MQE20_00845 PF00258 Flavodoxin MQE20_00850 PF03692 Putative zinc- or iron-chelating domain MQE20_00855 PF00478 IMP dehydrogenase / GMP reductase domain MQE20_00855 PF00571 CBS domain MQE20_00860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MQE20_00860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MQE20_00860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MQE20_00860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MQE20_00865 PF01243 Pyridoxamine 5'-phosphate oxidase MQE20_00865 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MQE20_00870 PF17768 RecJ OB domain MQE20_00870 PF02272 DHHA1 domain MQE20_00870 PF01368 DHH family MQE20_00890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE20_00895 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MQE20_00900 PF04452 RNA methyltransferase MQE20_00905 PF00924 Mechanosensitive ion channel MQE20_00915 PF13193 AMP-binding enzyme C-terminal domain MQE20_00915 PF00501 AMP-binding enzyme MQE20_00915 PF16177 Acetyl-coenzyme A synthetase N-terminus MQE20_00920 PF00857 Isochorismatase family MQE20_00925 PF01037 Lrp/AsnC ligand binding domain MQE20_00930 PF00872 Transposase, Mutator family MQE20_00935 PF00296 Luciferase-like monooxygenase MQE20_00940 PF03358 NADPH-dependent FMN reductase MQE20_00945 PF00196 Bacterial regulatory proteins, luxR family MQE20_00945 PF00072 Response regulator receiver domain MQE20_00955 PF00672 HAMP domain MQE20_00955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_00955 PF00512 His Kinase A (phospho-acceptor) domain MQE20_00955 PF00072 Response regulator receiver domain MQE20_00955 PF01627 Hpt domain MQE20_00960 PF04341 Protein of unknown function, DUF485 MQE20_00965 PF00474 Sodium:solute symporter family MQE20_00975 PF02028 BCCT, betaine/carnitine/choline family transporter MQE20_00985 PF00990 Diguanylate cyclase, GGDEF domain MQE20_00995 PF17755 UvrA DNA-binding domain MQE20_00995 PF17760 UvrA interaction domain MQE20_00995 PF00005 ABC transporter MQE20_01000 PF00440 Bacterial regulatory proteins, tetR family MQE20_01000 PF16925 Tetracyclin repressor-like, C-terminal domain MQE20_01005 PF00107 Zinc-binding dehydrogenase MQE20_01005 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_01015 PF06942 GlpM protein MQE20_01020 PF02581 Thiamine monophosphate synthase MQE20_01020 PF03070 TENA/THI-4/PQQC family MQE20_01020 PF08543 Phosphomethylpyrimidine kinase MQE20_01030 PF07690 Major Facilitator Superfamily MQE20_01035 PF00436 Single-strand binding protein family MQE20_01045 PF03591 AzlC protein MQE20_01055 PF00324 Amino acid permease MQE20_01060 PF00155 Aminotransferase class I and II MQE20_01060 PF00392 Bacterial regulatory proteins, gntR family MQE20_01065 PF00202 Aminotransferase class-III MQE20_01070 PF00171 Aldehyde dehydrogenase family MQE20_01075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_01080 PF00857 Isochorismatase family MQE20_01085 PF05726 Pirin C-terminal cupin domain MQE20_01085 PF02678 Pirin MQE20_01090 PF01593 Flavin containing amine oxidoreductase MQE20_01110 PF07690 Major Facilitator Superfamily MQE20_01115 PF03466 LysR substrate binding domain MQE20_01115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_01135 PF00248 Aldo/keto reductase family MQE20_01140 PF12833 Helix-turn-helix domain MQE20_01140 PF02311 AraC-like ligand binding domain MQE20_01170 PF01638 HxlR-like helix-turn-helix MQE20_01175 PF02525 Flavodoxin-like fold MQE20_01195 PF02705 K+ potassium transporter MQE20_01220 PF00230 Major intrinsic protein MQE20_01235 PF00977 Histidine biosynthesis protein MQE20_01240 PF01636 Phosphotransferase enzyme family MQE20_01255 PF03992 Antibiotic biosynthesis monooxygenase MQE20_01270 PF00977 Histidine biosynthesis protein MQE20_01285 PF00117 Glutamine amidotransferase class-I MQE20_01290 PF00475 Imidazoleglycerol-phosphate dehydratase MQE20_01310 PF00583 Acetyltransferase (GNAT) family MQE20_01315 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MQE20_01315 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MQE20_01325 PF00512 His Kinase A (phospho-acceptor) domain MQE20_01325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_01325 PF00672 HAMP domain MQE20_01330 PF00072 Response regulator receiver domain MQE20_01330 PF00486 Transcriptional regulatory protein, C terminal MQE20_01335 PF17674 HHH domain MQE20_01335 PF00575 S1 RNA binding domain MQE20_01335 PF09371 Tex-like protein N-terminal domain MQE20_01335 PF16921 Tex protein YqgF-like domain MQE20_01340 PF00916 Sulfate permease family MQE20_01340 PF01740 STAS domain MQE20_01345 PF00106 short chain dehydrogenase MQE20_01350 PF01053 Cys/Met metabolism PLP-dependent enzyme MQE20_01355 PF12848 ABC transporter MQE20_01355 PF00005 ABC transporter MQE20_01380 PF04191 Phospholipid methyltransferase MQE20_01400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE20_01400 PF00529 HlyD membrane-fusion protein of T1SS MQE20_01405 PF00873 AcrB/AcrD/AcrF family MQE20_01410 PF01545 Cation efflux family MQE20_01440 PF00324 Amino acid permease MQE20_01455 PF00749 tRNA synthetases class I (E and Q), catalytic domain MQE20_01470 PF01795 MraW methylase family MQE20_01480 PF03717 Penicillin-binding Protein dimerisation domain MQE20_01480 PF00905 Penicillin binding protein transpeptidase domain MQE20_01485 PF02875 Mur ligase family, glutamate ligase domain MQE20_01485 PF08245 Mur ligase middle domain MQE20_01485 PF01225 Mur ligase family, catalytic domain MQE20_01490 PF08245 Mur ligase middle domain MQE20_01490 PF02875 Mur ligase family, glutamate ligase domain MQE20_01490 PF01225 Mur ligase family, catalytic domain MQE20_01495 PF00953 Glycosyl transferase family 4 MQE20_01505 PF13847 Methyltransferase domain MQE20_01510 PF17092 Penicillin-binding protein OB-like domain MQE20_01510 PF00912 Transglycosylase MQE20_01510 PF00905 Penicillin binding protein transpeptidase domain MQE20_01515 PF11104 Type IV pilus assembly protein PilM; MQE20_01520 PF05137 Fimbrial assembly protein (PilN) MQE20_01525 PF04350 Pilus assembly protein, PilO MQE20_01535 PF11741 AMIN domain MQE20_01535 PF00263 Bacterial type II and III secretion system protein MQE20_01535 PF03958 Bacterial type II/III secretion system short domain MQE20_01535 PF07660 Secretin and TonB N terminus short domain MQE20_01540 PF01202 Shikimate kinase MQE20_01545 PF01761 3-dehydroquinate synthase MQE20_01555 PF01493 GXGXG motif MQE20_01555 PF01645 Conserved region in glutamate synthase MQE20_01555 PF00310 Glutamine amidotransferases class-II MQE20_01555 PF04898 Glutamate synthase central domain MQE20_01560 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_01560 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MQE20_01570 PF04011 LemA family MQE20_01575 PF04536 TPM domain MQE20_01585 PF00114 Pilin (bacterial filament) MQE20_01585 PF07963 Prokaryotic N-terminal methylation motif MQE20_01595 PF11846 Virulence factor membrane-bound polymerase, C-terminal MQE20_01595 PF04932 O-Antigen ligase MQE20_01595 PF15864 Protein glycosylation ligase MQE20_01600 PF00210 Ferritin-like domain MQE20_01605 PF04324 BFD-like [2Fe-2S] binding domain MQE20_01610 PF01042 Endoribonuclease L-PSP MQE20_01615 PF04607 Region found in RelA / SpoT proteins MQE20_01615 PF13291 ACT domain MQE20_01615 PF02824 TGS domain MQE20_01625 PF01192 RNA polymerase Rpb6 MQE20_01630 PF00625 Guanylate kinase MQE20_01635 PF02401 LytB protein MQE20_01675 PF00886 Ribosomal protein S16 MQE20_01680 PF01782 RimM N-terminal domain MQE20_01680 PF05239 PRC-barrel domain MQE20_01685 PF01746 tRNA (Guanine-1)-methyltransferase MQE20_01690 PF01245 Ribosomal protein L19 MQE20_01695 PF00561 alpha/beta hydrolase fold MQE20_01700 PF03280 Proteobacterial lipase chaperone protein MQE20_01705 PF01509 TruB family pseudouridylate synthase (N terminal domain) MQE20_01705 PF16198 tRNA pseudouridylate synthase B C-terminal domain MQE20_01705 PF09157 Pseudouridine synthase II TruB, C-terminal MQE20_01710 PF01925 Sulfite exporter TauE/SafE MQE20_01720 PF00892 EamA-like transporter family MQE20_01725 PF00892 EamA-like transporter family MQE20_01730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MQE20_01730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MQE20_01735 PF02913 FAD linked oxidases, C-terminal domain MQE20_01735 PF01565 FAD binding domain MQE20_01745 PF03992 Antibiotic biosynthesis monooxygenase MQE20_01750 PF02525 Flavodoxin-like fold MQE20_01760 PF07690 Major Facilitator Superfamily MQE20_01765 PF12805 FUSC-like inner membrane protein yccS MQE20_01770 PF00080 Copper/zinc superoxide dismutase (SODC) MQE20_01775 PF01594 AI-2E family transporter MQE20_01780 PF13614 AAA domain MQE20_01810 PF00324 Amino acid permease MQE20_01815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MQE20_01815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MQE20_01820 PF00202 Aminotransferase class-III MQE20_01825 PF04958 Arginine N-succinyltransferase beta subunit MQE20_01830 PF00171 Aldehyde dehydrogenase family MQE20_01835 PF04996 Succinylarginine dihydrolase MQE20_01840 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family MQE20_01855 PF05922 Peptidase inhibitor I9 MQE20_01855 PF00082 Subtilase family MQE20_01870 PF03466 LysR substrate binding domain MQE20_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_01875 PF00892 EamA-like transporter family MQE20_01890 PF05746 DALR anticodon binding domain MQE20_01890 PF02092 Glycyl-tRNA synthetase beta subunit MQE20_01895 PF02091 Glycyl-tRNA synthetase alpha subunit MQE20_01920 PF00571 CBS domain MQE20_01925 PF04024 PspC domain MQE20_01935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_01935 PF12806 Acetyl-CoA dehydrogenase C-terminal like MQE20_01935 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_01935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_01945 PF01488 Shikimate / quinate 5-dehydrogenase MQE20_01945 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MQE20_01945 PF08501 Shikimate dehydrogenase substrate binding domain MQE20_01950 PF01218 Coproporphyrinogen III oxidase MQE20_01955 PF00925 GTP cyclohydrolase II MQE20_01960 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MQE20_01960 PF02779 Transketolase, pyrimidine binding domain MQE20_01960 PF02780 Transketolase, C-terminal domain MQE20_01965 PF00459 Inositol monophosphatase family MQE20_01970 PF03880 DbpA RNA binding domain MQE20_01970 PF00270 DEAD/DEAH box helicase MQE20_01970 PF12343 Cold shock protein DEAD box A MQE20_01970 PF00271 Helicase conserved C-terminal domain MQE20_01980 PF00005 ABC transporter MQE20_01985 PF02405 Permease MlaE MQE20_01995 PF05494 MlaC protein MQE20_02005 PF01544 CorA-like Mg2+ transporter protein MQE20_02010 PF03641 Possible lysine decarboxylase MQE20_02015 PF00293 NUDIX domain MQE20_02020 PF00156 Phosphoribosyl transferase domain MQE20_02025 PF00270 DEAD/DEAH box helicase MQE20_02025 PF00271 Helicase conserved C-terminal domain MQE20_02025 PF17191 RecG wedge domain MQE20_02040 PF01553 Acyltransferase MQE20_02050 PF00375 Sodium:dicarboxylate symporter family MQE20_02060 PF01926 50S ribosome-binding GTPase MQE20_02065 PF02082 Transcriptional regulator MQE20_02070 PF00175 Oxidoreductase NAD-binding domain MQE20_02070 PF00970 Oxidoreductase FAD-binding domain MQE20_02070 PF00042 Globin MQE20_02075 PF05872 Bacterial protein of unknown function (DUF853) MQE20_02080 PF01053 Cys/Met metabolism PLP-dependent enzyme MQE20_02085 PF00117 Glutamine amidotransferase class-I MQE20_02090 PF00338 Ribosomal protein S10p/S20e MQE20_02095 PF00297 Ribosomal protein L3 MQE20_02100 PF00573 Ribosomal protein L4/L1 family MQE20_02105 PF00276 Ribosomal protein L23 MQE20_02110 PF03947 Ribosomal Proteins L2, C-terminal domain MQE20_02110 PF00181 Ribosomal Proteins L2, RNA binding domain MQE20_02115 PF00203 Ribosomal protein S19 MQE20_02120 PF00237 Ribosomal protein L22p/L17e MQE20_02130 PF00252 Ribosomal protein L16p/L10e MQE20_02135 PF00831 Ribosomal L29 protein MQE20_02140 PF00366 Ribosomal protein S17 MQE20_02145 PF00238 Ribosomal protein L14p/L23e MQE20_02150 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MQE20_02150 PF00467 KOW motif MQE20_02155 PF00673 ribosomal L5P family C-terminus MQE20_02155 PF00281 Ribosomal protein L5 MQE20_02160 PF00253 Ribosomal protein S14p/S29e MQE20_02165 PF00410 Ribosomal protein S8 MQE20_02170 PF00347 Ribosomal protein L6 MQE20_02175 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MQE20_02180 PF00333 Ribosomal protein S5, N-terminal domain MQE20_02180 PF03719 Ribosomal protein S5, C-terminal domain MQE20_02185 PF00327 Ribosomal protein L30p/L7e MQE20_02190 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MQE20_02195 PF00344 SecY translocase MQE20_02200 PF00444 Ribosomal protein L36 MQE20_02205 PF00416 Ribosomal protein S13/S18 MQE20_02210 PF00411 Ribosomal protein S11 MQE20_02215 PF00163 Ribosomal protein S4/S9 N-terminal domain MQE20_02215 PF01479 S4 domain MQE20_02220 PF01000 RNA polymerase Rpb3/RpoA insert domain MQE20_02220 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MQE20_02220 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MQE20_02225 PF01196 Ribosomal protein L17 MQE20_02230 PF00743 Flavin-binding monooxygenase-like MQE20_02235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_02235 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_02235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_02240 PF03937 Flavinator of succinate dehydrogenase MQE20_02270 PF09526 Probable metal-binding protein (DUF2387) MQE20_02275 PF01432 Peptidase family M3 MQE20_02280 PF17876 Cold shock domain MQE20_02280 PF08461 Ribonuclease R winged-helix domain MQE20_02280 PF08206 Ribonuclease B OB domain MQE20_02280 PF00773 RNB domain MQE20_02280 PF00575 S1 RNA binding domain MQE20_02325 PF01557 Fumarylacetoacetate (FAA) hydrolase family MQE20_02330 PF12833 Helix-turn-helix domain MQE20_02335 PF00892 EamA-like transporter family MQE20_02340 PF03631 Virulence factor BrkB MQE20_02345 PF03358 NADPH-dependent FMN reductase MQE20_02370 PF02130 Uncharacterized protein family UPF0054 MQE20_02375 PF02562 PhoH-like protein MQE20_02380 PF04055 Radical SAM superfamily MQE20_02380 PF00919 Uncharacterized protein family UPF0004 MQE20_02380 PF01938 TRAM domain MQE20_02385 PF01464 Transglycosylase SLT domain MQE20_02385 PF10145 Phage-related minor tail protein MQE20_02385 PF01551 Peptidase family M23 MQE20_02395 PF00056 lactate/malate dehydrogenase, NAD binding domain MQE20_02395 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MQE20_02415 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MQE20_02420 PF01066 CDP-alcohol phosphatidyltransferase MQE20_02465 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_02465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_02465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_02470 PF17932 Tetracyclin repressor-like, C-terminal domain MQE20_02470 PF00440 Bacterial regulatory proteins, tetR family MQE20_02485 PF01039 Carboxyl transferase domain MQE20_02490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_02490 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_02490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_02500 PF02785 Biotin carboxylase C-terminal domain MQE20_02500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MQE20_02500 PF00364 Biotin-requiring enzyme MQE20_02500 PF00289 Biotin carboxylase, N-terminal domain MQE20_02510 PF04386 Stringent starvation protein B MQE20_02515 PF00043 Glutathione S-transferase, C-terminal domain MQE20_02515 PF13417 Glutathione S-transferase, N-terminal domain MQE20_02520 PF00380 Ribosomal protein S9/S16 MQE20_02525 PF00572 Ribosomal protein L13 MQE20_02530 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MQE20_02535 PF00398 Ribosomal RNA adenine dimethylase MQE20_02540 PF00149 Calcineurin-like phosphoesterase MQE20_02560 PF16360 GTP-binding GTPase Middle Region MQE20_02560 PF13167 GTP-binding GTPase N-terminal MQE20_02560 PF01926 50S ribosome-binding GTPase MQE20_02570 PF13091 PLD-like domain MQE20_02575 PF00149 Calcineurin-like phosphoesterase MQE20_02575 PF10518 TAT (twin-arginine translocation) pathway signal sequence MQE20_02580 PF00691 OmpA family MQE20_02580 PF01389 OmpA-like transmembrane domain MQE20_02585 PF17152 Periplasmic sensor domain MQE20_02585 PF00990 Diguanylate cyclase, GGDEF domain MQE20_02620 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_02620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE20_02630 PF04273 Putative phosphatase (DUF442) MQE20_02630 PF00753 Metallo-beta-lactamase superfamily MQE20_02635 PF00561 alpha/beta hydrolase fold MQE20_02640 PF00085 Thioredoxin MQE20_02645 PF03061 Thioesterase superfamily MQE20_02655 PF04461 Protein of unknown function (DUF520) MQE20_02665 PF01266 FAD dependent oxidoreductase MQE20_02665 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MQE20_02675 PF03795 YCII-related domain MQE20_02680 PF04279 Intracellular septation protein A MQE20_02685 PF02811 PHP domain MQE20_02690 PF01062 Bestrophin, RFP-TM, chloride channel MQE20_02695 PF04002 RadC-like JAB domain MQE20_02700 PF04127 DNA / pantothenate metabolism flavoprotein MQE20_02700 PF02441 Flavoprotein MQE20_02705 PF07549 SecD/SecF GG Motif MQE20_02705 PF02355 Protein export membrane protein MQE20_02710 PF07549 SecD/SecF GG Motif MQE20_02710 PF13721 SecD export protein N-terminal TM region MQE20_02710 PF02355 Protein export membrane protein MQE20_02715 PF02699 Preprotein translocase subunit MQE20_02720 PF01702 Queuine tRNA-ribosyltransferase MQE20_02735 PF02547 Queuosine biosynthesis protein MQE20_02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_02765 PF00512 His Kinase A (phospho-acceptor) domain MQE20_02765 PF07689 KaiB domain MQE20_02770 PF03710 Glutamate-ammonia ligase adenylyltransferase MQE20_02770 PF08335 GlnD PII-uridylyltransferase MQE20_02775 PF01063 Amino-transferase class IV MQE20_02790 PF01522 Polysaccharide deacetylase MQE20_02795 PF00535 Glycosyl transferase family 2 MQE20_02800 PF13439 Glycosyltransferase Family 4 MQE20_02800 PF00534 Glycosyl transferases group 1 MQE20_02825 PF11380 Stealth protein CR2, conserved region 2 MQE20_02825 PF17101 Stealth protein CR1, conserved region 1 MQE20_02825 PF17102 Stealth protein CR3, conserved region 3 MQE20_02830 PF02938 GAD domain MQE20_02830 PF00152 tRNA synthetases class II (D, K and N) MQE20_02830 PF01336 OB-fold nucleic acid binding domain MQE20_02840 PF07715 TonB-dependent Receptor Plug Domain MQE20_02840 PF00593 TonB dependent receptor MQE20_02860 PF06146 Phosphate-starvation-inducible E MQE20_02865 PF00043 Glutathione S-transferase, C-terminal domain MQE20_02865 PF02798 Glutathione S-transferase, N-terminal domain MQE20_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_02870 PF03466 LysR substrate binding domain MQE20_02875 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_02875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_02875 PF12806 Acetyl-CoA dehydrogenase C-terminal like MQE20_02875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_02880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_02880 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_02880 PF12806 Acetyl-CoA dehydrogenase C-terminal like MQE20_02880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_02890 PF00512 His Kinase A (phospho-acceptor) domain MQE20_02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_02890 PF00672 HAMP domain MQE20_02895 PF00486 Transcriptional regulatory protein, C terminal MQE20_02895 PF00072 Response regulator receiver domain MQE20_02900 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MQE20_02920 PF01923 Cobalamin adenosyltransferase MQE20_02925 PF00593 TonB dependent receptor MQE20_02925 PF07715 TonB-dependent Receptor Plug Domain MQE20_02930 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MQE20_02935 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_02960 PF00290 Tryptophan synthase alpha chain MQE20_02965 PF01039 Carboxyl transferase domain MQE20_02970 PF02875 Mur ligase family, glutamate ligase domain MQE20_02970 PF08245 Mur ligase middle domain MQE20_02985 PF00753 Metallo-beta-lactamase superfamily MQE20_02990 PF10417 C-terminal domain of 1-Cys peroxiredoxin MQE20_02990 PF00578 AhpC/TSA family MQE20_02995 PF07516 SecA Wing and Scaffold domain MQE20_02995 PF01043 SecA preprotein cross-linking domain MQE20_02995 PF07517 SecA DEAD-like domain MQE20_02995 PF02810 SEC-C motif MQE20_03005 PF07690 Major Facilitator Superfamily MQE20_03005 PF00083 Sugar (and other) transporter MQE20_03010 PF03006 Haemolysin-III related MQE20_03035 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MQE20_03035 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MQE20_03035 PF00378 Enoyl-CoA hydratase/isomerase MQE20_03040 PF02803 Thiolase, C-terminal domain MQE20_03040 PF00108 Thiolase, N-terminal domain MQE20_03045 PF02311 AraC-like ligand binding domain MQE20_03045 PF12833 Helix-turn-helix domain MQE20_03050 PF02515 CoA-transferase family III MQE20_03055 PF04966 Carbohydrate-selective porin, OprB family MQE20_03060 PF01011 PQQ enzyme repeat MQE20_03065 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MQE20_03065 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MQE20_03075 PF00893 Small Multidrug Resistance protein MQE20_03085 PF02803 Thiolase, C-terminal domain MQE20_03085 PF00108 Thiolase, N-terminal domain MQE20_03095 PF13505 Outer membrane protein beta-barrel domain MQE20_03095 PF00691 OmpA family MQE20_03105 PF01139 tRNA-splicing ligase RtcB MQE20_03110 PF00324 Amino acid permease MQE20_03115 PF08468 Methyltransferase small domain N-terminal MQE20_03115 PF05175 Methyltransferase small domain MQE20_03120 PF00860 Permease family MQE20_03125 PF00679 Elongation factor G C-terminus MQE20_03125 PF00009 Elongation factor Tu GTP binding domain MQE20_03125 PF03144 Elongation factor Tu domain 2 MQE20_03130 PF01741 Large-conductance mechanosensitive channel, MscL MQE20_03145 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MQE20_03145 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MQE20_03145 PF06827 Zinc finger found in FPG and IleRS MQE20_03150 PF02245 Methylpurine-DNA glycosylase (MPG) MQE20_03170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE20_03185 PF10411 Disulfide bond isomerase protein N-terminus MQE20_03185 PF13098 Thioredoxin-like domain MQE20_03190 PF01571 Aminomethyltransferase folate-binding domain MQE20_03200 PF04343 Protein of unknown function, DUF488 MQE20_03205 PF03831 PhnA domain MQE20_03205 PF08274 PhnA Zinc-Ribbon MQE20_03210 PF07411 Domain of unknown function (DUF1508) MQE20_03215 PF04073 Aminoacyl-tRNA editing domain MQE20_03215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MQE20_03215 PF03129 Anticodon binding domain MQE20_03220 PF00873 AcrB/AcrD/AcrF family MQE20_03235 PF00072 Response regulator receiver domain MQE20_03240 PF00072 Response regulator receiver domain MQE20_03245 PF01584 CheW-like domain MQE20_03250 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term MQE20_03250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MQE20_03255 PF01627 Hpt domain MQE20_03255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_03255 PF01584 CheW-like domain MQE20_03255 PF00072 Response regulator receiver domain MQE20_03265 PF01546 Peptidase family M20/M25/M40 MQE20_03265 PF07687 Peptidase dimerisation domain MQE20_03270 PF08085 Entericidin EcnA/B family MQE20_03280 PF04304 Protein of unknown function (DUF454) MQE20_03285 PF17969 L,D-transpeptidase C-terminal domain MQE20_03285 PF03734 L,D-transpeptidase catalytic domain MQE20_03325 PF00667 FAD binding domain MQE20_03325 PF00258 Flavodoxin MQE20_03325 PF00175 Oxidoreductase NAD-binding domain MQE20_03335 PF12805 FUSC-like inner membrane protein yccS MQE20_03340 PF07690 Major Facilitator Superfamily MQE20_03345 PF00881 Nitroreductase family MQE20_03360 PF01235 Sodium:alanine symporter family MQE20_03365 PF01734 Patatin-like phospholipase MQE20_03370 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_03370 PF13291 ACT domain MQE20_03375 PF05992 SbmA/BacA-like family MQE20_03405 PF02637 GatB domain MQE20_03405 PF02934 GatB/GatE catalytic domain MQE20_03410 PF01425 Amidase MQE20_03415 PF02686 Glu-tRNAGln amidotransferase C subunit MQE20_03425 PF04085 rod shape-determining protein MreC MQE20_03430 PF04093 rod shape-determining protein MreD MQE20_03435 PF02545 Maf-like protein MQE20_03440 PF10150 Ribonuclease E/G family MQE20_03440 PF00575 S1 RNA binding domain MQE20_03450 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain MQE20_03450 PF06974 Protein of unknown function (DUF1298) MQE20_03455 PF01507 Phosphoadenosine phosphosulfate reductase family MQE20_03470 PF02525 Flavodoxin-like fold MQE20_03490 PF02673 Bacitracin resistance protein BacA MQE20_03495 PF06719 AraC-type transcriptional regulator N-terminus MQE20_03495 PF12833 Helix-turn-helix domain MQE20_03500 PF00109 Beta-ketoacyl synthase, N-terminal domain MQE20_03500 PF02801 Beta-ketoacyl synthase, C-terminal domain MQE20_03500 PF08659 KR domain MQE20_03500 PF00550 Phosphopantetheine attachment site MQE20_03500 PF14765 Polyketide synthase dehydratase MQE20_03500 PF16197 Ketoacyl-synthetase C-terminal extension MQE20_03500 PF09277 Erythronolide synthase, docking MQE20_03500 PF00698 Acyl transferase domain MQE20_03500 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_03500 PF08990 Erythronolide synthase docking MQE20_03505 PF01965 DJ-1/PfpI family MQE20_03515 PF00324 Amino acid permease MQE20_03520 PF04303 PrpF protein MQE20_03525 PF00348 Polyprenyl synthetase MQE20_03530 PF04237 YjbR MQE20_03535 PF01145 SPFH domain / Band 7 family MQE20_03545 PF01734 Patatin-like phospholipase MQE20_03565 PF08019 Phosphoethanolamine transferase EptA/EptB MQE20_03565 PF00884 Sulfatase MQE20_03570 PF00072 Response regulator receiver domain MQE20_03570 PF00486 Transcriptional regulatory protein, C terminal MQE20_03575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_03575 PF08521 Two-component sensor kinase N-terminal MQE20_03575 PF00512 His Kinase A (phospho-acceptor) domain MQE20_03585 PF00909 Ammonium Transporter Family MQE20_03590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_03590 PF03466 LysR substrate binding domain MQE20_03610 PF08264 Anticodon-binding domain of tRNA MQE20_03610 PF00133 tRNA synthetases class I (I, L, M and V) MQE20_03610 PF10458 Valyl tRNA synthetase tRNA binding arm MQE20_03630 PF01906 Putative heavy-metal-binding MQE20_03635 PF01906 Putative heavy-metal-binding MQE20_03640 PF02321 Outer membrane efflux protein MQE20_03645 PF00873 AcrB/AcrD/AcrF family MQE20_03650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE20_03650 PF00529 HlyD membrane-fusion protein of T1SS MQE20_03655 PF01569 PAP2 superfamily MQE20_03665 PF00348 Polyprenyl synthetase MQE20_03675 PF00829 Ribosomal prokaryotic L21 protein MQE20_03680 PF01016 Ribosomal L27 protein MQE20_03685 PF03548 Outer membrane lipoprotein carrier protein LolA MQE20_03695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MQE20_03695 PF02403 Seryl-tRNA synthetase N-terminal domain MQE20_03700 PF14824 Sirohaem biosynthesis protein central MQE20_03700 PF10414 Sirohaem synthase dimerisation region MQE20_03700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MQE20_03705 PF00588 SpoU rRNA Methylase family MQE20_03710 PF01638 HxlR-like helix-turn-helix MQE20_03715 PF03358 NADPH-dependent FMN reductase MQE20_03720 PF13520 Amino acid permease MQE20_03725 PF00465 Iron-containing alcohol dehydrogenase MQE20_03735 PF03099 Biotin/lipoate A/B protein ligase family MQE20_03740 PF04359 Protein of unknown function (DUF493) MQE20_03745 PF04545 Sigma-70, region 4 MQE20_03745 PF04542 Sigma-70 region 2 MQE20_03745 PF04539 Sigma-70 region 3 MQE20_03745 PF03979 Sigma-70 factor, region 1.1 MQE20_03745 PF04546 Sigma-70, non-essential region MQE20_03745 PF00140 Sigma-70 factor, region 1.2 MQE20_03765 PF00581 Rhodanese-like domain MQE20_03765 PF17773 UPF0176 acylphosphatase like domain MQE20_03775 PF00285 Citrate synthase, C-terminal domain MQE20_03780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MQE20_03785 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MQE20_03790 PF00890 FAD binding domain MQE20_03790 PF02910 Fumarate reductase flavoprotein C-term MQE20_03795 PF13085 2Fe-2S iron-sulfur cluster binding domain MQE20_03810 PF02779 Transketolase, pyrimidine binding domain MQE20_03810 PF16078 2-oxoglutarate dehydrogenase N-terminus MQE20_03810 PF00676 Dehydrogenase E1 component MQE20_03810 PF16870 2-oxoglutarate dehydrogenase C-terminal MQE20_03815 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MQE20_03815 PF00364 Biotin-requiring enzyme MQE20_03815 PF02817 e3 binding domain MQE20_03820 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_03820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE20_03825 PF08442 ATP-grasp domain MQE20_03825 PF00549 CoA-ligase MQE20_03830 PF00549 CoA-ligase MQE20_03830 PF02629 CoA binding domain MQE20_03835 PF00579 tRNA synthetases class I (W and Y) MQE20_03840 PF05661 Protein of unknown function (DUF808) MQE20_03845 PF04228 Putative neutral zinc metallopeptidase MQE20_03850 PF00999 Sodium/hydrogen exchanger family MQE20_03865 PF09587 Bacterial capsule synthesis protein PGA_cap MQE20_03875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MQE20_03880 PF00582 Universal stress protein family MQE20_03885 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_03890 PF01272 Transcription elongation factor, GreA/GreB, C-term MQE20_03890 PF03449 Transcription elongation factor, N-terminal MQE20_03895 PF02142 MGS-like domain MQE20_03895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MQE20_03895 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MQE20_03900 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MQE20_03900 PF00117 Glutamine amidotransferase class-I MQE20_03915 PF01985 CRS1 / YhbY (CRM) domain MQE20_03920 PF01728 FtsJ-like methyltransferase MQE20_03925 PF00004 ATPase family associated with various cellular activities (AAA) MQE20_03925 PF17862 AAA+ lid domain MQE20_03925 PF06480 FtsH Extracellular MQE20_03925 PF01434 Peptidase family M41 MQE20_03930 PF00809 Pterin binding enzyme MQE20_03950 PF16655 PhoD-like phosphatase, N-terminal domain MQE20_03950 PF09423 PhoD-like phosphatase MQE20_03965 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MQE20_03965 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MQE20_03980 PF00083 Sugar (and other) transporter MQE20_03985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MQE20_03985 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MQE20_03990 PF01266 FAD dependent oxidoreductase MQE20_03990 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MQE20_03995 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain MQE20_03995 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain MQE20_04000 PF00781 Diacylglycerol kinase catalytic domain MQE20_04005 PF00149 Calcineurin-like phosphoesterase MQE20_04015 PF00166 Chaperonin 10 Kd subunit MQE20_04020 PF00118 TCP-1/cpn60 chaperonin family MQE20_04025 PF01219 Prokaryotic diacylglycerol kinase MQE20_04030 PF00753 Metallo-beta-lactamase superfamily MQE20_04035 PF03009 Glycerophosphoryl diester phosphodiesterase family MQE20_04040 PF00873 AcrB/AcrD/AcrF family MQE20_04050 PF01435 Peptidase family M48 MQE20_04055 PF01464 Transglycosylase SLT domain MQE20_04060 PF01171 PP-loop family MQE20_04070 PF01464 Transglycosylase SLT domain MQE20_04070 PF00497 Bacterial extracellular solute-binding proteins, family 3 MQE20_04075 PF01272 Transcription elongation factor, GreA/GreB, C-term MQE20_04075 PF03449 Transcription elongation factor, N-terminal MQE20_04090 PF00501 AMP-binding enzyme MQE20_04090 PF13193 AMP-binding enzyme C-terminal domain MQE20_04090 PF00668 Condensation domain MQE20_04090 PF00550 Phosphopantetheine attachment site MQE20_04090 PF00975 Thioesterase domain MQE20_04120 PF00881 Nitroreductase family MQE20_04135 PF02595 Glycerate kinase family MQE20_04140 PF00384 Molybdopterin oxidoreductase MQE20_04145 PF02634 FdhD/NarQ family MQE20_04150 PF06803 Protein of unknown function (DUF1232) MQE20_04155 PF11890 Domain of unknown function (DUF3410) MQE20_04155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MQE20_04155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MQE20_04160 PF00152 tRNA synthetases class II (D, K and N) MQE20_04170 PF18073 Rubredoxin metal binding domain MQE20_04175 PF00324 Amino acid permease MQE20_04185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MQE20_04185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MQE20_04190 PF01678 Diaminopimelate epimerase MQE20_04195 PF01810 LysE type translocator MQE20_04200 PF02899 Phage integrase, N-terminal SAM-like domain MQE20_04200 PF00589 Phage integrase family MQE20_04205 PF01012 Electron transfer flavoprotein domain MQE20_04210 PF00766 Electron transfer flavoprotein FAD-binding domain MQE20_04210 PF01012 Electron transfer flavoprotein domain MQE20_04215 PF00521 DNA gyrase/topoisomerase IV, subunit A MQE20_04215 PF03989 DNA gyrase C-terminal domain, beta-propeller MQE20_04230 PF00535 Glycosyl transferase family 2 MQE20_04250 PF13533 Biotin-lipoyl like MQE20_04260 PF00266 Aminotransferase class-V MQE20_04275 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MQE20_04285 PF02687 FtsX-like permease family MQE20_04285 PF12704 MacB-like periplasmic core domain MQE20_04290 PF00005 ABC transporter MQE20_04295 PF00753 Metallo-beta-lactamase superfamily MQE20_04295 PF13567 Domain of unknown function (DUF4131) MQE20_04295 PF03772 Competence protein MQE20_04305 PF06965 Na+/H+ antiporter 1 MQE20_04305 PF01343 Peptidase family S49 MQE20_04310 PF12697 Alpha/beta hydrolase family MQE20_04315 PF00551 Formyl transferase MQE20_04320 PF00586 AIR synthase related protein, N-terminal domain MQE20_04320 PF02769 AIR synthase related protein, C-terminal domain MQE20_04325 PF01594 AI-2E family transporter MQE20_04330 PF11638 DnaA N-terminal domain MQE20_04330 PF00308 Bacterial dnaA protein MQE20_04330 PF08299 Bacterial dnaA protein helix-turn-helix MQE20_04360 PF00588 SpoU rRNA Methylase family MQE20_04360 PF08032 RNA 2'-O ribose methyltransferase substrate binding MQE20_04365 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MQE20_04375 PF00691 OmpA family MQE20_04380 PF07676 WD40-like Beta Propeller Repeat MQE20_04380 PF04052 TolB amino-terminal domain MQE20_04390 PF02472 Biopolymer transport protein ExbD/TolR MQE20_04395 PF01618 MotA/TolQ/ExbB proton channel family MQE20_04400 PF03061 Thioesterase superfamily MQE20_04405 PF01546 Peptidase family M20/M25/M40 MQE20_04405 PF07687 Peptidase dimerisation domain MQE20_04410 PF17864 RuvB AAA lid domain MQE20_04410 PF05496 Holliday junction DNA helicase RuvB P-loop domain MQE20_04410 PF05491 RuvB C-terminal winged helix domain MQE20_04415 PF01330 RuvA N terminal domain MQE20_04415 PF07499 RuvA, C-terminal domain MQE20_04420 PF01966 HD domain MQE20_04425 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MQE20_04425 PF02769 AIR synthase related protein, C-terminal domain MQE20_04425 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MQE20_04430 PF07690 Major Facilitator Superfamily MQE20_04435 PF01784 NIF3 (NGG1p interacting factor 3) MQE20_04440 PF00378 Enoyl-CoA hydratase/isomerase MQE20_04445 PF00293 NUDIX domain MQE20_04445 PF01467 Cytidylyltransferase-like MQE20_04455 PF00578 AhpC/TSA family MQE20_04470 PF06508 Queuosine biosynthesis protein QueC MQE20_04480 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_04480 PF14602 Hexapeptide repeat of succinyl-transferase MQE20_04480 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MQE20_04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_04490 PF03466 LysR substrate binding domain MQE20_04495 PF12857 TOBE-like domain MQE20_04495 PF00005 ABC transporter MQE20_04500 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_04505 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_04520 PF01063 Amino-transferase class IV MQE20_04525 PF02618 YceG-like family MQE20_04530 PF02223 Thymidylate kinase MQE20_04540 PF00890 FAD binding domain MQE20_04540 PF02910 Fumarate reductase flavoprotein C-term MQE20_04545 PF13180 PDZ domain MQE20_04555 PF00679 Elongation factor G C-terminus MQE20_04555 PF00009 Elongation factor Tu GTP binding domain MQE20_04555 PF03144 Elongation factor Tu domain 2 MQE20_04555 PF06421 GTP-binding protein LepA C-terminus MQE20_04560 PF10502 Signal peptidase, peptidase S26 MQE20_04570 PF14622 Ribonuclease-III-like MQE20_04570 PF00035 Double-stranded RNA binding motif MQE20_04575 PF01926 50S ribosome-binding GTPase MQE20_04575 PF07650 KH domain MQE20_04585 PF11967 Recombination protein O N terminal MQE20_04585 PF02565 Recombination protein O C terminal MQE20_04590 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MQE20_04595 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) MQE20_04600 PF00106 short chain dehydrogenase MQE20_04630 PF00155 Aminotransferase class I and II MQE20_04640 PF17151 Periplasmic sensor domain MQE20_04640 PF00990 Diguanylate cyclase, GGDEF domain MQE20_04650 PF00271 Helicase conserved C-terminal domain MQE20_04650 PF04851 Type III restriction enzyme, res subunit MQE20_04650 PF12344 Ultra-violet resistance protein B MQE20_04650 PF02151 UvrB/uvrC motif MQE20_04650 PF17757 UvrB interaction domain MQE20_04660 PF00892 EamA-like transporter family MQE20_04665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MQE20_04665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MQE20_04680 PF01926 50S ribosome-binding GTPase MQE20_04680 PF01018 GTP1/OBG MQE20_04685 PF00696 Amino acid kinase family MQE20_04685 PF01472 PUA domain MQE20_04695 PF07759 Protein of unknown function (DUF1615) MQE20_04700 PF01207 Dihydrouridine synthase (Dus) MQE20_04705 PF03060 Nitronate monooxygenase MQE20_04720 PF02350 UDP-N-acetylglucosamine 2-epimerase MQE20_04750 PF00875 DNA photolyase MQE20_04750 PF03441 FAD binding domain of DNA photolyase MQE20_04755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MQE20_04760 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_04765 PF00768 D-alanyl-D-alanine carboxypeptidase MQE20_04765 PF07943 Penicillin-binding protein 5, C-terminal domain MQE20_04775 PF03971 Monomeric isocitrate dehydrogenase MQE20_04780 PF00849 RNA pseudouridylate synthase MQE20_04785 PF00180 Isocitrate/isopropylmalate dehydrogenase MQE20_04805 PF06779 Uncharacterised MFS-type transporter YbfB MQE20_04810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_04810 PF03466 LysR substrate binding domain MQE20_04815 PF00375 Sodium:dicarboxylate symporter family MQE20_04820 PF02567 Phenazine biosynthesis-like protein MQE20_04825 PF00675 Insulinase (Peptidase family M16) MQE20_04825 PF05193 Peptidase M16 inactive domain MQE20_04850 PF02581 Thiamine monophosphate synthase MQE20_04855 PF00202 Aminotransferase class-III MQE20_04865 PF00849 RNA pseudouridylate synthase MQE20_04870 PF18337 RapA N-terminal Tudor like domain MQE20_04870 PF00271 Helicase conserved C-terminal domain MQE20_04870 PF12137 RNA polymerase recycling family C-terminal MQE20_04870 PF18339 RapA N-terminal Tudor like domain 1 MQE20_04870 PF00176 SNF2 family N-terminal domain MQE20_04880 PF00440 Bacterial regulatory proteins, tetR family MQE20_04885 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE20_04885 PF00175 Oxidoreductase NAD-binding domain MQE20_04885 PF00970 Oxidoreductase FAD-binding domain MQE20_04890 PF00487 Fatty acid desaturase MQE20_04900 PF00440 Bacterial regulatory proteins, tetR family MQE20_04900 PF17754 MftR C-terminal domain MQE20_04910 PF00202 Aminotransferase class-III MQE20_04915 PF00282 Pyridoxal-dependent decarboxylase conserved domain MQE20_04920 PF00171 Aldehyde dehydrogenase family MQE20_04925 PF01037 Lrp/AsnC ligand binding domain MQE20_04930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MQE20_04930 PF00205 Thiamine pyrophosphate enzyme, central domain MQE20_04930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MQE20_04935 PF00324 Amino acid permease MQE20_04940 PF12849 PBP superfamily domain MQE20_04945 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_04950 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_04955 PF00005 ABC transporter MQE20_04960 PF01343 Peptidase family S49 MQE20_04960 PF08496 Peptidase family S49 N-terminal MQE20_04975 PF08328 Adenylosuccinate lyase C-terminal MQE20_04975 PF00206 Lyase MQE20_04980 PF04356 Protein of unknown function (DUF489) MQE20_04990 PF13344 Haloacid dehalogenase-like hydrolase MQE20_04990 PF00293 NUDIX domain MQE20_04995 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_05000 PF00768 D-alanyl-D-alanine carboxypeptidase MQE20_05000 PF07943 Penicillin-binding protein 5, C-terminal domain MQE20_05015 PF01975 Survival protein SurE MQE20_05020 PF01476 LysM domain MQE20_05020 PF01551 Peptidase family M23 MQE20_05025 PF03466 LysR substrate binding domain MQE20_05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_05030 PF05362 Lon protease (S16) C-terminal proteolytic domain MQE20_05030 PF13654 AAA domain MQE20_05035 PF07690 Major Facilitator Superfamily MQE20_05040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MQE20_05045 PF13593 SBF-like CPA transporter family (DUF4137) MQE20_05050 PF01197 Ribosomal protein L31 MQE20_05065 PF04055 Radical SAM superfamily MQE20_05070 PF08207 Elongation factor P (EF-P) KOW-like domain MQE20_05070 PF09285 Elongation factor P, C-terminal MQE20_05070 PF01132 Elongation factor P (EF-P) OB domain MQE20_05075 PF02554 Carbon starvation protein CstA MQE20_05075 PF13722 5TM C-terminal transporter carbon starvation CstA MQE20_05080 PF04328 Selenoprotein, putative MQE20_05115 PF13556 PucR C-terminal helix-turn-helix domain MQE20_05115 PF17853 GGDEF-like domain MQE20_05115 PF06018 CodY GAF-like domain MQE20_05130 PF00171 Aldehyde dehydrogenase family MQE20_05135 PF00324 Amino acid permease MQE20_05140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_05140 PF03466 LysR substrate binding domain MQE20_05145 PF02028 BCCT, betaine/carnitine/choline family transporter MQE20_05150 PF02028 BCCT, betaine/carnitine/choline family transporter MQE20_05155 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MQE20_05155 PF00355 Rieske [2Fe-2S] domain MQE20_05160 PF00171 Aldehyde dehydrogenase family MQE20_05170 PF18113 Rubredoxin binding C-terminal domain MQE20_05170 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_05175 PF01266 FAD dependent oxidoreductase MQE20_05175 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MQE20_05195 PF00892 EamA-like transporter family MQE20_05205 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system MQE20_05210 PF00083 Sugar (and other) transporter MQE20_05215 PF13378 Enolase C-terminal domain-like MQE20_05215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MQE20_05220 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_05220 PF14765 Polyketide synthase dehydratase MQE20_05220 PF08990 Erythronolide synthase docking MQE20_05220 PF09277 Erythronolide synthase, docking MQE20_05220 PF16197 Ketoacyl-synthetase C-terminal extension MQE20_05220 PF00109 Beta-ketoacyl synthase, N-terminal domain MQE20_05220 PF02801 Beta-ketoacyl synthase, C-terminal domain MQE20_05220 PF08659 KR domain MQE20_05220 PF00550 Phosphopantetheine attachment site MQE20_05220 PF00698 Acyl transferase domain MQE20_05225 PF00440 Bacterial regulatory proteins, tetR family MQE20_05245 PF02678 Pirin MQE20_05245 PF17954 Quercetinase C-terminal cupin domain MQE20_05255 PF08348 YheO-like PAS domain MQE20_05255 PF13309 HTH domain MQE20_05265 PF00550 Phosphopantetheine attachment site MQE20_05265 PF00668 Condensation domain MQE20_05265 PF13193 AMP-binding enzyme C-terminal domain MQE20_05265 PF00501 AMP-binding enzyme MQE20_05270 PF00501 AMP-binding enzyme MQE20_05270 PF00550 Phosphopantetheine attachment site MQE20_05270 PF00975 Thioesterase domain MQE20_05270 PF00668 Condensation domain MQE20_05270 PF13193 AMP-binding enzyme C-terminal domain MQE20_05275 PF01032 FecCD transport family MQE20_05280 PF01032 FecCD transport family MQE20_05285 PF00005 ABC transporter MQE20_05290 PF01497 Periplasmic binding protein MQE20_05295 PF07715 TonB-dependent Receptor Plug Domain MQE20_05295 PF00593 TonB dependent receptor MQE20_05300 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) MQE20_05305 PF00501 AMP-binding enzyme MQE20_05305 PF00668 Condensation domain MQE20_05305 PF00550 Phosphopantetheine attachment site MQE20_05310 PF00501 AMP-binding enzyme MQE20_05310 PF13193 AMP-binding enzyme C-terminal domain MQE20_05315 PF00857 Isochorismatase family MQE20_05315 PF00550 Phosphopantetheine attachment site MQE20_05320 PF00282 Pyridoxal-dependent decarboxylase conserved domain MQE20_05330 PF00005 ABC transporter MQE20_05335 PF00005 ABC transporter MQE20_05340 PF00975 Thioesterase domain MQE20_05350 PF00425 chorismate binding enzyme MQE20_05360 PF01208 Uroporphyrinogen decarboxylase (URO-D) MQE20_05365 PF05675 Protein of unknown function (DUF817) MQE20_05380 PF00144 Beta-lactamase MQE20_05390 PF01227 GTP cyclohydrolase I MQE20_05395 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE20_05395 PF01799 [2Fe-2S] binding domain MQE20_05400 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MQE20_05400 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MQE20_05415 PF00218 Indole-3-glycerol phosphate synthase MQE20_05420 PF02885 Glycosyl transferase family, helical bundle domain MQE20_05420 PF00591 Glycosyl transferase family, a/b domain MQE20_05425 PF07715 TonB-dependent Receptor Plug Domain MQE20_05425 PF00593 TonB dependent receptor MQE20_05430 PF11838 ERAP1-like C-terminal domain MQE20_05430 PF01433 Peptidase family M1 domain MQE20_05435 PF00117 Glutamine amidotransferase class-I MQE20_05445 PF00854 POT family MQE20_05450 PF00120 Glutamine synthetase, catalytic domain MQE20_05450 PF03951 Glutamine synthetase, beta-Grasp domain MQE20_05455 PF04345 Chorismate lyase MQE20_05460 PF01040 UbiA prenyltransferase family MQE20_05495 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MQE20_05495 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MQE20_05500 PF01784 NIF3 (NGG1p interacting factor 3) MQE20_05505 PF13180 PDZ domain MQE20_05510 PF01743 Poly A polymerase head domain MQE20_05510 PF12627 Probable RNA and SrmB- binding site of polymerase A MQE20_05515 PF00390 Malic enzyme, N-terminal domain MQE20_05515 PF03949 Malic enzyme, NAD binding domain MQE20_05515 PF01515 Phosphate acetyl/butaryl transferase MQE20_05520 PF00990 Diguanylate cyclase, GGDEF domain MQE20_05520 PF03707 Bacterial signalling protein N terminal repeat MQE20_05520 PF00563 EAL domain MQE20_05525 PF04452 RNA methyltransferase MQE20_05530 PF02219 Methylenetetrahydrofolate reductase MQE20_05535 PF05221 S-adenosyl-L-homocysteine hydrolase MQE20_05535 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MQE20_05550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_05550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_05550 PF09317 Domain of unknown function (DUF1974) MQE20_05555 PF04055 Radical SAM superfamily MQE20_05560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE20_05560 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_05580 PF00557 Metallopeptidase family M24 MQE20_05585 PF00318 Ribosomal protein S2 MQE20_05590 PF00889 Elongation factor TS MQE20_05600 PF12833 Helix-turn-helix domain MQE20_05620 PF03330 Lytic transglycolase MQE20_05620 PF05036 Sporulation related domain MQE20_05625 PF13406 Transglycosylase SLT domain MQE20_05630 PF01098 Cell cycle protein MQE20_05640 PF14489 QueF-like protein MQE20_05640 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term MQE20_05645 PF01061 ABC-2 type transporter MQE20_05650 PF00005 ABC transporter MQE20_05680 PF00464 Serine hydroxymethyltransferase MQE20_05685 PF02321 Outer membrane efflux protein MQE20_05690 PF00873 AcrB/AcrD/AcrF family MQE20_05695 PF13533 Biotin-lipoyl like MQE20_05700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_05700 PF03466 LysR substrate binding domain MQE20_05705 PF00497 Bacterial extracellular solute-binding proteins, family 3 MQE20_05710 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_05715 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_05720 PF00005 ABC transporter MQE20_05725 PF00893 Small Multidrug Resistance protein MQE20_05730 PF00037 4Fe-4S binding domain MQE20_05735 PF01136 Peptidase family U32 MQE20_05735 PF16325 Peptidase family U32 C-terminal domain MQE20_05740 PF00155 Aminotransferase class I and II MQE20_05740 PF00392 Bacterial regulatory proteins, gntR family MQE20_05745 PF02567 Phenazine biosynthesis-like protein MQE20_05750 PF00970 Oxidoreductase FAD-binding domain MQE20_05750 PF00175 Oxidoreductase NAD-binding domain MQE20_05755 PF01980 tRNA-methyltransferase O MQE20_05755 PF18389 TrmO C-terminal domain MQE20_05765 PF00437 Type II/IV secretion system protein MQE20_05765 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MQE20_05775 PF00072 Response regulator receiver domain MQE20_05775 PF00486 Transcriptional regulatory protein, C terminal MQE20_05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_05780 PF08521 Two-component sensor kinase N-terminal MQE20_05780 PF00512 His Kinase A (phospho-acceptor) domain MQE20_05790 PF00293 NUDIX domain MQE20_05800 PF14814 Bifunctional transglycosylase second domain MQE20_05800 PF00905 Penicillin binding protein transpeptidase domain MQE20_05800 PF00912 Transglycosylase MQE20_05805 PF01513 ATP-NAD kinase MQE20_05810 PF07023 Protein of unknown function (DUF1315) MQE20_05815 PF00591 Glycosyl transferase family, a/b domain MQE20_05815 PF02885 Glycosyl transferase family, helical bundle domain MQE20_05820 PF00375 Sodium:dicarboxylate symporter family MQE20_05825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_05825 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_05825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_05830 PF00756 Putative esterase MQE20_05835 PF00800 Prephenate dehydratase MQE20_05835 PF01817 Chorismate mutase type II MQE20_05835 PF01842 ACT domain MQE20_05840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MQE20_05850 PF07687 Peptidase dimerisation domain MQE20_05850 PF01546 Peptidase family M20/M25/M40 MQE20_05855 PF12706 Beta-lactamase superfamily domain MQE20_05865 PF03883 Peroxide stress protein YaaA MQE20_05875 PF05690 Thiazole biosynthesis protein ThiG MQE20_05885 PF04241 Protein of unknown function (DUF423) MQE20_05890 PF04545 Sigma-70, region 4 MQE20_05890 PF00140 Sigma-70 factor, region 1.2 MQE20_05890 PF04542 Sigma-70 region 2 MQE20_05905 PF00313 'Cold-shock' DNA-binding domain MQE20_05910 PF00271 Helicase conserved C-terminal domain MQE20_05910 PF00270 DEAD/DEAH box helicase MQE20_05920 PF00881 Nitroreductase family MQE20_05925 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MQE20_05925 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MQE20_05935 PF00589 Phage integrase family MQE20_06045 PF00145 C-5 cytosine-specific DNA methylase MQE20_06050 PF01555 DNA methylase MQE20_06240 PF03869 Arc-like DNA binding domain MQE20_06345 PF01180 Dihydroorotate dehydrogenase MQE20_06350 PF02674 Colicin V production protein MQE20_06355 PF00156 Phosphoribosyl transferase domain MQE20_06370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MQE20_06370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MQE20_06375 PF01435 Peptidase family M48 MQE20_06380 PF09424 Yqey-like protein MQE20_06385 PF01165 Ribosomal protein S21 MQE20_06390 PF00814 Glycoprotease family MQE20_06410 PF00069 Protein kinase domain MQE20_06435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_06435 PF03466 LysR substrate binding domain MQE20_06440 PF00202 Aminotransferase class-III MQE20_06445 PF00171 Aldehyde dehydrogenase family MQE20_06450 PF00324 Amino acid permease MQE20_06480 PF04076 Bacterial OB fold (BOF) protein MQE20_06505 PF00561 alpha/beta hydrolase fold MQE20_06510 PF03616 Sodium/glutamate symporter MQE20_06520 PF07729 FCD domain MQE20_06520 PF00392 Bacterial regulatory proteins, gntR family MQE20_06570 PF08946 Osmosensory transporter coiled coil MQE20_06570 PF00083 Sugar (and other) transporter MQE20_06595 PF00155 Aminotransferase class I and II MQE20_06600 PF06826 Predicted Permease Membrane Region MQE20_06600 PF02080 TrkA-C domain MQE20_06610 PF04403 Paraquat-inducible protein A MQE20_06615 PF02470 MlaD protein MQE20_06625 PF01177 Asp/Glu/Hydantoin racemase MQE20_06630 PF00892 EamA-like transporter family MQE20_06635 PF07995 Glucose / Sorbosone dehydrogenase MQE20_06645 PF13610 DDE domain MQE20_06655 PF01636 Phosphotransferase enzyme family MQE20_06660 PF13610 DDE domain MQE20_06675 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_06685 PF00893 Small Multidrug Resistance protein MQE20_06690 PF00809 Pterin binding enzyme MQE20_06705 PF07091 Ribosomal RNA methyltransferase (FmrO) MQE20_06720 PF12848 ABC transporter MQE20_06720 PF00005 ABC transporter MQE20_06725 PF01636 Phosphotransferase enzyme family MQE20_06735 PF13005 zinc-finger binding domain of transposase IS66 MQE20_06735 PF13007 Transposase C of IS166 homeodomain MQE20_06735 PF13817 IS66 C-terminal element MQE20_06735 PF03050 Transposase IS66 family MQE20_06760 PF13610 DDE domain MQE20_06765 PF02515 CoA-transferase family III MQE20_06770 PF09339 IclR helix-turn-helix domain MQE20_06775 PF00378 Enoyl-CoA hydratase/isomerase MQE20_06780 PF03060 Nitronate monooxygenase MQE20_06785 PF07690 Major Facilitator Superfamily MQE20_06790 PF09339 IclR helix-turn-helix domain MQE20_06795 PF02803 Thiolase, C-terminal domain MQE20_06795 PF00108 Thiolase, N-terminal domain MQE20_06800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MQE20_06800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MQE20_06800 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain MQE20_06810 PF00378 Enoyl-CoA hydratase/isomerase MQE20_06815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_06815 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_06815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_06820 PF07690 Major Facilitator Superfamily MQE20_06825 PF01144 Coenzyme A transferase MQE20_06830 PF01144 Coenzyme A transferase MQE20_06840 PF07690 Major Facilitator Superfamily MQE20_06850 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_06850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_06850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_06850 PF12806 Acetyl-CoA dehydrogenase C-terminal like MQE20_06865 PF03466 LysR substrate binding domain MQE20_06865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_06870 PF00682 HMGL-like MQE20_06875 PF18140 Propionyl-coenzyme A carboxylase BT domain MQE20_06875 PF00364 Biotin-requiring enzyme MQE20_06875 PF02785 Biotin carboxylase C-terminal domain MQE20_06875 PF00289 Biotin carboxylase, N-terminal domain MQE20_06875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MQE20_06880 PF00378 Enoyl-CoA hydratase/isomerase MQE20_06885 PF01039 Carboxyl transferase domain MQE20_06890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_06890 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_06890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_06895 PF00440 Bacterial regulatory proteins, tetR family MQE20_06900 PF00501 AMP-binding enzyme MQE20_06900 PF13193 AMP-binding enzyme C-terminal domain MQE20_06920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_06920 PF03466 LysR substrate binding domain MQE20_06955 PF02464 Competence-damaged protein MQE20_06955 PF18146 Damage-inducible protein CinA KH domain MQE20_06955 PF00994 Probable molybdopterin binding domain MQE20_06965 PF06628 Catalase-related immune-responsive MQE20_06965 PF18011 C-terminal domain found in long catalases MQE20_06965 PF00199 Catalase MQE20_06990 PF00717 Peptidase S24-like MQE20_07000 PF01037 Lrp/AsnC ligand binding domain MQE20_07000 PF13404 AsnC-type helix-turn-helix domain MQE20_07010 PF00072 Response regulator receiver domain MQE20_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_07010 PF00512 His Kinase A (phospho-acceptor) domain MQE20_07010 PF09308 LuxQ, periplasmic MQE20_07015 PF00072 Response regulator receiver domain MQE20_07030 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_07035 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_07040 PF00005 ABC transporter MQE20_07045 PF00497 Bacterial extracellular solute-binding proteins, family 3 MQE20_07050 PF00497 Bacterial extracellular solute-binding proteins, family 3 MQE20_07060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_07060 PF03466 LysR substrate binding domain MQE20_07065 PF01810 LysE type translocator MQE20_07075 PF00266 Aminotransferase class-V MQE20_07085 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_07090 PF00581 Rhodanese-like domain MQE20_07100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_07100 PF03466 LysR substrate binding domain MQE20_07105 PF02798 Glutathione S-transferase, N-terminal domain MQE20_07110 PF02798 Glutathione S-transferase, N-terminal domain MQE20_07110 PF14834 Glutathione S-transferase, C-terminal domain MQE20_07115 PF03466 LysR substrate binding domain MQE20_07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_07120 PF03788 LrgA family MQE20_07125 PF04172 LrgB-like family MQE20_07130 PF00155 Aminotransferase class I and II MQE20_07130 PF00392 Bacterial regulatory proteins, gntR family MQE20_07145 PF07690 Major Facilitator Superfamily MQE20_07150 PF16957 Malonate decarboxylase, alpha subunit, transporter MQE20_07155 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase MQE20_07160 PF06857 Malonate decarboxylase delta subunit (MdcD) MQE20_07165 PF01039 Carboxyl transferase domain MQE20_07175 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG MQE20_07180 PF00698 Acyl transferase domain MQE20_07195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_07195 PF03466 LysR substrate binding domain MQE20_07200 PF00392 Bacterial regulatory proteins, gntR family MQE20_07200 PF00155 Aminotransferase class I and II MQE20_07210 PF02322 Cytochrome bd terminal oxidase subunit II MQE20_07215 PF01654 Cytochrome bd terminal oxidase subunit I MQE20_07225 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MQE20_07225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_07225 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_07230 PF00296 Luciferase-like monooxygenase MQE20_07235 PF00083 Sugar (and other) transporter MQE20_07245 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MQE20_07250 PF00005 ABC transporter MQE20_07255 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_07260 PF02668 Taurine catabolism dioxygenase TauD, TfdA family MQE20_07265 PF01177 Asp/Glu/Hydantoin racemase MQE20_07270 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin MQE20_07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_07280 PF03466 LysR substrate binding domain MQE20_07290 PF01979 Amidohydrolase family MQE20_07290 PF13382 Adenine deaminase C-terminal domain MQE20_07300 PF03960 ArsC family MQE20_07305 PF01022 Bacterial regulatory protein, arsR family MQE20_07310 PF01758 Sodium Bile acid symporter family MQE20_07315 PF03466 LysR substrate binding domain MQE20_07315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_07330 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_07330 PF13192 Thioredoxin domain MQE20_07345 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_07350 PF00588 SpoU rRNA Methylase family MQE20_07355 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MQE20_07355 PF07733 Bacterial DNA polymerase III alpha NTPase domain MQE20_07355 PF14579 Helix-hairpin-helix motif MQE20_07355 PF01336 OB-fold nucleic acid binding domain MQE20_07355 PF02811 PHP domain MQE20_07360 PF00710 Asparaginase, N-terminal MQE20_07360 PF17763 Glutaminase/Asparaginase C-terminal domain MQE20_07365 PF00375 Sodium:dicarboxylate symporter family MQE20_07370 PF00155 Aminotransferase class I and II MQE20_07375 PF01641 SelR domain MQE20_07380 PF00255 Glutathione peroxidase MQE20_07385 PF12852 Cupin MQE20_07385 PF12833 Helix-turn-helix domain MQE20_07395 PF00155 Aminotransferase class I and II MQE20_07400 PF08335 GlnD PII-uridylyltransferase MQE20_07400 PF01966 HD domain MQE20_07400 PF01909 Nucleotidyltransferase domain MQE20_07405 PF02222 ATP-grasp domain MQE20_07415 PF05437 Branched-chain amino acid transport protein (AzlD) MQE20_07420 PF03591 AzlC protein MQE20_07445 PF01926 50S ribosome-binding GTPase MQE20_07445 PF06071 Protein of unknown function (DUF933) MQE20_07450 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_07455 PF09383 NIL domain MQE20_07455 PF00005 ABC transporter MQE20_07460 PF03180 NLPA lipoprotein MQE20_07465 PF03180 NLPA lipoprotein MQE20_07470 PF00296 Luciferase-like monooxygenase MQE20_07480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_07480 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MQE20_07495 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_07500 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_07505 PF00005 ABC transporter MQE20_07515 PF01037 Lrp/AsnC ligand binding domain MQE20_07520 PF01709 Transcriptional regulator MQE20_07530 PF00440 Bacterial regulatory proteins, tetR family MQE20_07550 PF03466 LysR substrate binding domain MQE20_07550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_07560 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin MQE20_07570 PF00892 EamA-like transporter family MQE20_07595 PF00577 Outer membrane usher protein MQE20_07595 PF13954 PapC N-terminal domain MQE20_07595 PF13953 PapC C-terminal domain MQE20_07600 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain MQE20_07600 PF02753 Pili assembly chaperone PapD, C-terminal domain MQE20_07605 PF16970 Type-1 fimbrial protein, A MQE20_07620 PF06968 Biotin and Thiamin Synthesis associated domain MQE20_07620 PF04055 Radical SAM superfamily MQE20_07625 PF08331 Domain of unknown function (DUF1730) MQE20_07635 PF02075 Crossover junction endodeoxyribonuclease RuvC MQE20_07650 PF00905 Penicillin binding protein transpeptidase domain MQE20_07675 PF02773 S-adenosylmethionine synthetase, C-terminal domain MQE20_07675 PF02772 S-adenosylmethionine synthetase, central domain MQE20_07675 PF00438 S-adenosylmethionine synthetase, N-terminal domain MQE20_07680 PF02779 Transketolase, pyrimidine binding domain MQE20_07680 PF02780 Transketolase, C-terminal domain MQE20_07680 PF00456 Transketolase, thiamine diphosphate binding domain MQE20_07690 PF04264 YceI-like domain MQE20_07700 PF09992 Phosphodiester glycosidase MQE20_07710 PF05958 tRNA (Uracil-5-)-methyltransferase MQE20_07715 PF04229 GrpB protein MQE20_07720 PF00171 Aldehyde dehydrogenase family MQE20_07720 PF14850 DNA-binding domain of Proline dehydrogenase MQE20_07720 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MQE20_07720 PF01619 Proline dehydrogenase MQE20_07725 PF01037 Lrp/AsnC ligand binding domain MQE20_07730 PF00474 Sodium:solute symporter family MQE20_07735 PF02146 Sir2 family MQE20_07740 PF01597 Glycine cleavage H-protein MQE20_07745 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MQE20_07745 PF12833 Helix-turn-helix domain MQE20_07755 PF00664 ABC transporter transmembrane region MQE20_07755 PF00005 ABC transporter MQE20_07760 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) MQE20_07765 PF06912 Protein of unknown function (DUF1275) MQE20_07770 PF00375 Sodium:dicarboxylate symporter family MQE20_07785 PF08007 Cupin superfamily protein MQE20_07790 PF02545 Maf-like protein MQE20_07800 PF00162 Phosphoglycerate kinase MQE20_07810 PF01116 Fructose-bisphosphate aldolase class-II MQE20_07815 PF09312 SurA N-terminal domain MQE20_07815 PF00639 PPIC-type PPIASE domain MQE20_07820 PF03968 OstA-like protein MQE20_07820 PF04453 LPS transport system D MQE20_07825 PF01636 Phosphotransferase enzyme family MQE20_07830 PF00483 Nucleotidyl transferase MQE20_07835 PF02527 rRNA small subunit methyltransferase G MQE20_07840 PF13614 AAA domain MQE20_07845 PF02195 ParB-like nuclease domain MQE20_07845 PF17762 HTH domain found in ParB protein MQE20_07850 PF01618 MotA/TolQ/ExbB proton channel family MQE20_07860 PF00664 ABC transporter transmembrane region MQE20_07860 PF00005 ABC transporter MQE20_07865 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MQE20_07870 PF02348 Cytidylyltransferase MQE20_07875 PF09115 DNA polymerase III, delta subunit, C terminal MQE20_07885 PF01026 TatD related DNase MQE20_07900 PF02501 Type II secretion system (T2SS), protein I MQE20_07900 PF07963 Prokaryotic N-terminal methylation motif MQE20_07905 PF07963 Prokaryotic N-terminal methylation motif MQE20_07905 PF11612 Type II secretion system (T2SS), protein J MQE20_07910 PF03934 Type II secretion system (T2SS), protein K MQE20_07920 PF03167 Uracil DNA glycosylase superfamily MQE20_07930 PF14437 MafB19-like deaminase MQE20_07940 PF02224 Cytidylate kinase MQE20_07945 PF00575 S1 RNA binding domain MQE20_07950 PF00216 Bacterial DNA-binding protein MQE20_07960 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MQE20_07970 PF00743 Flavin-binding monooxygenase-like MQE20_07980 PF03969 AFG1-like ATPase MQE20_07985 PF01274 Malate synthase MQE20_07995 PF02472 Biopolymer transport protein ExbD/TolR MQE20_08000 PF02472 Biopolymer transport protein ExbD/TolR MQE20_08005 PF01618 MotA/TolQ/ExbB proton channel family MQE20_08015 PF00593 TonB dependent receptor MQE20_08015 PF07715 TonB-dependent Receptor Plug Domain MQE20_08035 PF01432 Peptidase family M3 MQE20_08040 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_08045 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_08050 PF00005 ABC transporter MQE20_08050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MQE20_08065 PF00459 Inositol monophosphatase family MQE20_08075 PF01649 Ribosomal protein S20 MQE20_08080 PF13460 NAD(P)H-binding MQE20_08085 PF03737 Aldolase/RraA MQE20_08105 PF03461 TRCF domain MQE20_08105 PF00271 Helicase conserved C-terminal domain MQE20_08105 PF00270 DEAD/DEAH box helicase MQE20_08105 PF02559 CarD-like/TRCF domain MQE20_08105 PF17757 UvrB interaction domain MQE20_08115 PF00211 Adenylate and Guanylate cyclase catalytic domain MQE20_08120 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE20_08125 PF00012 Hsp70 protein MQE20_08130 PF00226 DnaJ domain MQE20_08130 PF07743 HSCB C-terminal oligomerisation domain MQE20_08135 PF01521 Iron-sulphur cluster biosynthesis MQE20_08140 PF01592 NifU-like N terminal domain MQE20_08145 PF00266 Aminotransferase class-V MQE20_08150 PF02082 Transcriptional regulator MQE20_08165 PF00216 Bacterial DNA-binding protein MQE20_08170 PF00639 PPIC-type PPIASE domain MQE20_08170 PF09312 SurA N-terminal domain MQE20_08175 PF12833 Helix-turn-helix domain MQE20_08175 PF12852 Cupin MQE20_08180 PF00487 Fatty acid desaturase MQE20_08185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_08185 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_08185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_08190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_08190 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_08190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_08195 PF03109 ABC1 family MQE20_08205 PF04073 Aminoacyl-tRNA editing domain MQE20_08210 PF04183 IucA / IucC family MQE20_08210 PF06276 Ferric iron reductase FhuF-like transporter MQE20_08215 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) MQE20_08220 PF07690 Major Facilitator Superfamily MQE20_08225 PF04183 IucA / IucC family MQE20_08225 PF06276 Ferric iron reductase FhuF-like transporter MQE20_08230 PF06276 Ferric iron reductase FhuF-like transporter MQE20_08230 PF04183 IucA / IucC family MQE20_08245 PF00593 TonB dependent receptor MQE20_08245 PF07715 TonB-dependent Receptor Plug Domain MQE20_08270 PF13419 Haloacid dehalogenase-like hydrolase MQE20_08280 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase MQE20_08285 PF02277 Phosphoribosyltransferase MQE20_08300 PF02654 Cobalamin-5-phosphate synthase MQE20_08305 PF00793 DAHP synthetase I family MQE20_08310 PF01925 Sulfite exporter TauE/SafE MQE20_08330 PF00593 TonB dependent receptor MQE20_08330 PF07715 TonB-dependent Receptor Plug Domain MQE20_08335 PF02684 Lipid-A-disaccharide synthetase MQE20_08345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE20_08350 PF00005 ABC transporter MQE20_08385 PF01230 HIT domain MQE20_08415 PF08241 Methyltransferase domain MQE20_08420 PF00561 alpha/beta hydrolase fold MQE20_08425 PF01053 Cys/Met metabolism PLP-dependent enzyme MQE20_08435 PF02575 YbaB/EbfC DNA-binding family MQE20_08440 PF02132 RecR protein MQE20_08440 PF13662 Toprim domain MQE20_08445 PF00570 HRDC domain MQE20_08445 PF01612 3'-5' exonuclease MQE20_08465 PF05166 YcgL domain MQE20_08475 PF00004 ATPase family associated with various cellular activities (AAA) MQE20_08475 PF01434 Peptidase family M41 MQE20_08475 PF17862 AAA+ lid domain MQE20_08485 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_08490 PF05175 Methyltransferase small domain MQE20_08495 PF01264 Chorismate synthase MQE20_08500 PF08448 PAS fold MQE20_08500 PF00990 Diguanylate cyclase, GGDEF domain MQE20_08515 PF04055 Radical SAM superfamily MQE20_08520 PF00676 Dehydrogenase E1 component MQE20_08525 PF02779 Transketolase, pyrimidine binding domain MQE20_08525 PF02780 Transketolase, C-terminal domain MQE20_08530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MQE20_08530 PF00364 Biotin-requiring enzyme MQE20_08530 PF02817 e3 binding domain MQE20_08535 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_08535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE20_08540 PF00106 short chain dehydrogenase MQE20_08545 PF00107 Zinc-binding dehydrogenase MQE20_08545 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_08550 PF01062 Bestrophin, RFP-TM, chloride channel MQE20_08555 PF02954 Bacterial regulatory protein, Fis family MQE20_08555 PF00158 Sigma-54 interaction domain MQE20_08555 PF00072 Response regulator receiver domain MQE20_08560 PF00753 Metallo-beta-lactamase superfamily MQE20_08560 PF04273 Putative phosphatase (DUF442) MQE20_08575 PF01925 Sulfite exporter TauE/SafE MQE20_08590 PF12833 Helix-turn-helix domain MQE20_08590 PF06445 GyrI-like small molecule binding domain MQE20_08595 PF01638 HxlR-like helix-turn-helix MQE20_08600 PF02525 Flavodoxin-like fold MQE20_08610 PF07702 UTRA domain MQE20_08610 PF00392 Bacterial regulatory proteins, gntR family MQE20_08625 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MQE20_08630 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_08635 PF00005 ABC transporter MQE20_08650 PF00083 Sugar (and other) transporter MQE20_08655 PF00593 TonB dependent receptor MQE20_08655 PF07715 TonB-dependent Receptor Plug Domain MQE20_08660 PF10415 Fumarase C C-terminus MQE20_08660 PF00206 Lyase MQE20_08675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_08675 PF03466 LysR substrate binding domain MQE20_08680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_08680 PF03466 LysR substrate binding domain MQE20_08685 PF02803 Thiolase, C-terminal domain MQE20_08685 PF00108 Thiolase, N-terminal domain MQE20_08690 PF02667 Short chain fatty acid transporter MQE20_08695 PF01144 Coenzyme A transferase MQE20_08700 PF01144 Coenzyme A transferase MQE20_08705 PF03466 LysR substrate binding domain MQE20_08705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_08730 PF12833 Helix-turn-helix domain MQE20_08730 PF06719 AraC-type transcriptional regulator N-terminus MQE20_08735 PF07690 Major Facilitator Superfamily MQE20_08740 PF01738 Dienelactone hydrolase family MQE20_08755 PF01613 Flavin reductase like domain MQE20_08765 PF14525 AraC-binding-like domain MQE20_08765 PF12833 Helix-turn-helix domain MQE20_08770 PF00175 Oxidoreductase NAD-binding domain MQE20_08770 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE20_08770 PF00970 Oxidoreductase FAD-binding domain MQE20_08775 PF00866 Ring hydroxylating beta subunit MQE20_08780 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MQE20_08780 PF00355 Rieske [2Fe-2S] domain MQE20_08785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_08785 PF03459 TOBE domain MQE20_08795 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_08800 PF03459 TOBE domain MQE20_08800 PF00005 ABC transporter MQE20_08805 PF00106 short chain dehydrogenase MQE20_08810 PF00550 Phosphopantetheine attachment site MQE20_08810 PF00857 Isochorismatase family MQE20_08820 PF00149 Calcineurin-like phosphoesterase MQE20_08825 PF02503 Polyphosphate kinase middle domain MQE20_08825 PF13090 Polyphosphate kinase C-terminal domain 2 MQE20_08825 PF17941 Polyphosphate kinase C-terminal domain 1 MQE20_08825 PF13089 Polyphosphate kinase N-terminal domain MQE20_08830 PF08042 PqqA family MQE20_08835 PF12706 Beta-lactamase superfamily domain MQE20_08840 PF03070 TENA/THI-4/PQQC family MQE20_08845 PF05402 Coenzyme PQQ synthesis protein D (PqqD) MQE20_08850 PF04055 Radical SAM superfamily MQE20_08850 PF13186 Iron-sulfur cluster-binding domain MQE20_08855 PF01244 Membrane dipeptidase (Peptidase family M19) MQE20_08870 PF13091 PLD-like domain MQE20_08885 PF00199 Catalase MQE20_08895 PF00107 Zinc-binding dehydrogenase MQE20_08895 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_08905 PF00419 Fimbrial protein MQE20_08910 PF13953 PapC C-terminal domain MQE20_08910 PF00577 Outer membrane usher protein MQE20_08910 PF13954 PapC N-terminal domain MQE20_08915 PF02753 Pili assembly chaperone PapD, C-terminal domain MQE20_08915 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain MQE20_08925 PF16970 Type-1 fimbrial protein, A MQE20_08945 PF01266 FAD dependent oxidoreductase MQE20_08960 PF01593 Flavin containing amine oxidoreductase MQE20_08965 PF00743 Flavin-binding monooxygenase-like MQE20_08970 PF12146 Serine aminopeptidase, S33 MQE20_08975 PF02321 Outer membrane efflux protein MQE20_08980 PF00873 AcrB/AcrD/AcrF family MQE20_08985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE20_08985 PF00529 HlyD membrane-fusion protein of T1SS MQE20_09005 PF16527 Two-component sensor protein CpxA, periplasmic domain MQE20_09005 PF00512 His Kinase A (phospho-acceptor) domain MQE20_09005 PF00672 HAMP domain MQE20_09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_09015 PF12833 Helix-turn-helix domain MQE20_09015 PF02311 AraC-like ligand binding domain MQE20_09020 PF12146 Serine aminopeptidase, S33 MQE20_09070 PF13291 ACT domain MQE20_09070 PF04607 Region found in RelA / SpoT proteins MQE20_09070 PF02824 TGS domain MQE20_09080 PF01975 Survival protein SurE MQE20_09105 PF07690 Major Facilitator Superfamily MQE20_09110 PF13533 Biotin-lipoyl like MQE20_09115 PF01425 Amidase MQE20_09120 PF00196 Bacterial regulatory proteins, luxR family MQE20_09195 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MQE20_09200 PF14572 Phosphoribosyl synthetase-associated domain MQE20_09200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MQE20_09220 PF00005 ABC transporter MQE20_09225 PF01032 FecCD transport family MQE20_09235 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_09235 PF00107 Zinc-binding dehydrogenase MQE20_09250 PF12833 Helix-turn-helix domain MQE20_09250 PF06719 AraC-type transcriptional regulator N-terminus MQE20_09255 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MQE20_09255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MQE20_09260 PF07690 Major Facilitator Superfamily MQE20_09265 PF01370 NAD dependent epimerase/dehydratase family MQE20_09270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_09270 PF03466 LysR substrate binding domain MQE20_09280 PF00920 Dehydratase family MQE20_09285 PF00171 Aldehyde dehydrogenase family MQE20_09300 PF00529 HlyD membrane-fusion protein of T1SS MQE20_09300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE20_09335 PF03737 Aldolase/RraA MQE20_09340 PF01842 ACT domain MQE20_09340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MQE20_09340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MQE20_09345 PF07690 Major Facilitator Superfamily MQE20_09365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_09365 PF03466 LysR substrate binding domain MQE20_09375 PF08450 SMP-30/Gluconolactonase/LRE-like region MQE20_09380 PF00392 Bacterial regulatory proteins, gntR family MQE20_09380 PF07702 UTRA domain MQE20_09390 PF04909 Amidohydrolase MQE20_09395 PF07690 Major Facilitator Superfamily MQE20_09410 PF04829 Pre-toxin domain with VENN motif MQE20_09410 PF05860 haemagglutination activity domain MQE20_09410 PF13018 Extended Signal Peptide of Type V secretion system MQE20_09410 PF13332 Hemagglutinin repeat MQE20_09415 PF08479 POTRA domain, ShlB-type MQE20_09415 PF17287 POTRA domain MQE20_09415 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB MQE20_09425 PF01546 Peptidase family M20/M25/M40 MQE20_09425 PF07687 Peptidase dimerisation domain MQE20_09435 PF02254 TrkA-N domain MQE20_09435 PF00999 Sodium/hydrogen exchanger family MQE20_09455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_09455 PF03466 LysR substrate binding domain MQE20_09460 PF00857 Isochorismatase family MQE20_09470 PF00440 Bacterial regulatory proteins, tetR family MQE20_09470 PF08359 YsiA-like protein, C-terminal region MQE20_09475 PF12706 Beta-lactamase superfamily domain MQE20_09485 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_09495 PF00376 MerR family regulatory protein MQE20_09495 PF09278 MerR, DNA binding MQE20_09500 PF01872 RibD C-terminal domain MQE20_09505 PF00106 short chain dehydrogenase MQE20_09510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE20_09510 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_09515 PF01047 MarR family MQE20_09520 PF07859 alpha/beta hydrolase fold MQE20_09535 PF00199 Catalase MQE20_09535 PF06628 Catalase-related immune-responsive MQE20_09540 PF00561 alpha/beta hydrolase fold MQE20_09550 PF00171 Aldehyde dehydrogenase family MQE20_09555 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_09555 PF00107 Zinc-binding dehydrogenase MQE20_09560 PF00474 Sodium:solute symporter family MQE20_09565 PF04341 Protein of unknown function, DUF485 MQE20_09570 PF00501 AMP-binding enzyme MQE20_09570 PF13193 AMP-binding enzyme C-terminal domain MQE20_09575 PF02954 Bacterial regulatory protein, Fis family MQE20_09575 PF06506 Propionate catabolism activator MQE20_09575 PF00158 Sigma-54 interaction domain MQE20_09585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_09585 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_09585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_09605 PF00171 Aldehyde dehydrogenase family MQE20_09615 PF07690 Major Facilitator Superfamily MQE20_09620 PF00920 Dehydratase family MQE20_09625 PF07729 FCD domain MQE20_09625 PF00392 Bacterial regulatory proteins, gntR family MQE20_09635 PF03466 LysR substrate binding domain MQE20_09635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_09640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MQE20_09640 PF13378 Enolase C-terminal domain-like MQE20_09645 PF02426 Muconolactone delta-isomerase MQE20_09650 PF04444 Catechol dioxygenase N terminus MQE20_09650 PF00775 Dioxygenase MQE20_09655 PF01144 Coenzyme A transferase MQE20_09660 PF01144 Coenzyme A transferase MQE20_09665 PF00108 Thiolase, N-terminal domain MQE20_09665 PF02803 Thiolase, C-terminal domain MQE20_09670 PF12146 Serine aminopeptidase, S33 MQE20_09675 PF01804 Penicillin amidase MQE20_09680 PF00171 Aldehyde dehydrogenase family MQE20_09690 PF01179 Copper amine oxidase, enzyme domain MQE20_09690 PF07833 Copper amine oxidase N-terminal domain MQE20_09690 PF02728 Copper amine oxidase, N3 domain MQE20_09690 PF02727 Copper amine oxidase, N2 domain MQE20_09695 PF12833 Helix-turn-helix domain MQE20_09695 PF02311 AraC-like ligand binding domain MQE20_09700 PF01613 Flavin reductase like domain MQE20_09705 PF00175 Oxidoreductase NAD-binding domain MQE20_09705 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE20_09720 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MQE20_09720 PF00355 Rieske [2Fe-2S] domain MQE20_09735 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MQE20_09740 PF01425 Amidase MQE20_09750 PF07690 Major Facilitator Superfamily MQE20_09760 PF00106 short chain dehydrogenase MQE20_09775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_09775 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_09775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_09780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_09780 PF03466 LysR substrate binding domain MQE20_09785 PF09339 IclR helix-turn-helix domain MQE20_09785 PF01614 Bacterial transcriptional regulator MQE20_09790 PF00753 Metallo-beta-lactamase superfamily MQE20_09800 PF04143 Sulphur transport MQE20_09810 PF13360 PQQ-like domain MQE20_09810 PF01011 PQQ enzyme repeat MQE20_09815 PF04966 Carbohydrate-selective porin, OprB family MQE20_09835 PF01487 Type I 3-dehydroquinase MQE20_09840 PF00775 Dioxygenase MQE20_09845 PF00775 Dioxygenase MQE20_09845 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal MQE20_09850 PF02627 Carboxymuconolactone decarboxylase family MQE20_09855 PF07690 Major Facilitator Superfamily MQE20_09860 PF00561 alpha/beta hydrolase fold MQE20_09865 PF00206 Lyase MQE20_09865 PF10397 Adenylosuccinate lyase C-terminus MQE20_09870 PF02803 Thiolase, C-terminal domain MQE20_09870 PF00108 Thiolase, N-terminal domain MQE20_09875 PF01144 Coenzyme A transferase MQE20_09880 PF01144 Coenzyme A transferase MQE20_09885 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MQE20_09890 PF04977 Septum formation initiator MQE20_09895 PF04239 Protein of unknown function (DUF421) MQE20_09900 PF00113 Enolase, C-terminal TIM barrel domain MQE20_09900 PF03952 Enolase, N-terminal domain MQE20_09905 PF00793 DAHP synthetase I family MQE20_09910 PF06418 CTP synthase N-terminus MQE20_09910 PF00117 Glutamine amidotransferase class-I MQE20_09940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE20_09940 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_09955 PF00793 DAHP synthetase I family MQE20_09960 PF02694 Uncharacterised BCR, YnfA/UPF0060 family MQE20_09965 PF02861 Clp amino terminal domain, pathogenicity island component MQE20_09965 PF10431 C-terminal, D2-small domain, of ClpB protein MQE20_09965 PF17871 AAA lid domain MQE20_09965 PF07724 AAA domain (Cdc48 subfamily) MQE20_09965 PF00004 ATPase family associated with various cellular activities (AAA) MQE20_09970 PF02617 ATP-dependent Clp protease adaptor protein ClpS MQE20_09980 PF02774 Semialdehyde dehydrogenase, dimerisation domain MQE20_09980 PF01118 Semialdehyde dehydrogenase, NAD binding domain MQE20_09995 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MQE20_10000 PF00585 C-terminal regulatory domain of Threonine dehydratase MQE20_10000 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_10005 PF02254 TrkA-N domain MQE20_10005 PF02080 TrkA-C domain MQE20_10010 PF02386 Cation transport protein MQE20_10015 PF02253 Phospholipase A1 MQE20_10020 PF05193 Peptidase M16 inactive domain MQE20_10020 PF08367 Peptidase M16C associated MQE20_10020 PF00675 Insulinase (Peptidase family M16) MQE20_10025 PF07715 TonB-dependent Receptor Plug Domain MQE20_10025 PF00593 TonB dependent receptor MQE20_10030 PF00294 pfkB family carbohydrate kinase MQE20_10040 PF07290 Protein of unknown function (DUF1449) MQE20_10050 PF01654 Cytochrome bd terminal oxidase subunit I MQE20_10055 PF02322 Cytochrome bd terminal oxidase subunit II MQE20_10060 PF08173 Membrane bound YbgT-like protein MQE20_10075 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) MQE20_10085 PF02881 SRP54-type protein, helical bundle domain MQE20_10085 PF00448 SRP54-type protein, GTPase domain MQE20_10110 PF00571 CBS domain MQE20_10110 PF00478 IMP dehydrogenase / GMP reductase domain MQE20_10115 PF00202 Aminotransferase class-III MQE20_10120 PF00462 Glutaredoxin MQE20_10130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_10130 PF03466 LysR substrate binding domain MQE20_10135 PF00557 Metallopeptidase family M24 MQE20_10140 PF05525 Branched-chain amino acid transport protein MQE20_10165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MQE20_10165 PF00381 PTS HPr component phosphorylation site MQE20_10165 PF02896 PEP-utilising enzyme, TIM barrel domain MQE20_10165 PF00391 PEP-utilising enzyme, mobile domain MQE20_10165 PF05524 PEP-utilising enzyme, N-terminal MQE20_10170 PF00294 pfkB family carbohydrate kinase MQE20_10175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MQE20_10175 PF02378 Phosphotransferase system, EIIC MQE20_10195 PF00563 EAL domain MQE20_10195 PF00990 Diguanylate cyclase, GGDEF domain MQE20_10195 PF03707 Bacterial signalling protein N terminal repeat MQE20_10205 PF07995 Glucose / Sorbosone dehydrogenase MQE20_10210 PF02586 SOS response associated peptidase (SRAP) MQE20_10215 PF01740 STAS domain MQE20_10215 PF00916 Sulfate permease family MQE20_10220 PF05922 Peptidase inhibitor I9 MQE20_10220 PF00082 Subtilase family MQE20_10235 PF00324 Amino acid permease MQE20_10240 PF00266 Aminotransferase class-V MQE20_10245 PF01037 Lrp/AsnC ligand binding domain MQE20_10270 PF13419 Haloacid dehalogenase-like hydrolase MQE20_10275 PF01479 S4 domain MQE20_10280 PF00154 recA bacterial DNA recombination protein MQE20_10285 PF02631 RecX family MQE20_10300 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MQE20_10300 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_10305 PF07977 FabA-like domain MQE20_10310 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_10310 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MQE20_10320 PF01103 Surface antigen MQE20_10320 PF07244 Surface antigen variable number repeat MQE20_10325 PF13180 PDZ domain MQE20_10325 PF17820 PDZ domain MQE20_10325 PF02163 Peptidase family M50 MQE20_10330 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MQE20_10330 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MQE20_10330 PF13288 DXP reductoisomerase C-terminal domain MQE20_10340 PF01255 Putative undecaprenyl diphosphate synthase MQE20_10345 PF01765 Ribosome recycling factor MQE20_10350 PF00696 Amino acid kinase family MQE20_10355 PF04055 Radical SAM superfamily MQE20_10355 PF18693 TRAM domain MQE20_10355 PF00919 Uncharacterized protein family UPF0004 MQE20_10360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_10360 PF00512 His Kinase A (phospho-acceptor) domain MQE20_10360 PF00989 PAS fold MQE20_10365 PF00158 Sigma-54 interaction domain MQE20_10365 PF00072 Response regulator receiver domain MQE20_10365 PF02954 Bacterial regulatory protein, Fis family MQE20_10385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MQE20_10385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MQE20_10395 PF02542 YgbB family MQE20_10405 PF01266 FAD dependent oxidoreductase MQE20_10425 PF10415 Fumarase C C-terminus MQE20_10425 PF00206 Lyase MQE20_10430 PF16363 GDP-mannose 4,6 dehydratase MQE20_10435 PF02635 DsrE/DsrF-like family MQE20_10455 PF00892 EamA-like transporter family MQE20_10460 PF00392 Bacterial regulatory proteins, gntR family MQE20_10460 PF00155 Aminotransferase class I and II MQE20_10465 PF01638 HxlR-like helix-turn-helix MQE20_10470 PF00994 Probable molybdopterin binding domain MQE20_10470 PF03454 MoeA C-terminal region (domain IV) MQE20_10470 PF03453 MoeA N-terminal region (domain I and II) MQE20_10475 PF00994 Probable molybdopterin binding domain MQE20_10475 PF01967 MoaC family MQE20_10480 PF02391 MoaE protein MQE20_10490 PF04055 Radical SAM superfamily MQE20_10490 PF06463 Molybdenum Cofactor Synthesis C MQE20_10495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MQE20_10495 PF00384 Molybdopterin oxidoreductase MQE20_10495 PF01568 Molydopterin dinucleotide binding domain MQE20_10500 PF12804 MobA-like NTP transferase domain MQE20_10505 PF04324 BFD-like [2Fe-2S] binding domain MQE20_10505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MQE20_10505 PF00384 Molybdopterin oxidoreductase MQE20_10505 PF01568 Molydopterin dinucleotide binding domain MQE20_10510 PF04324 BFD-like [2Fe-2S] binding domain MQE20_10510 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MQE20_10510 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MQE20_10510 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_10510 PF18267 Rubredoxin NAD+ reductase C-terminal domain MQE20_10515 PF18267 Rubredoxin NAD+ reductase C-terminal domain MQE20_10515 PF13806 Rieske-like [2Fe-2S] domain MQE20_10515 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MQE20_10515 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MQE20_10515 PF04324 BFD-like [2Fe-2S] binding domain MQE20_10515 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_10525 PF00072 Response regulator receiver domain MQE20_10525 PF00486 Transcriptional regulatory protein, C terminal MQE20_10530 PF00005 ABC transporter MQE20_10540 PF13438 Domain of unknown function (DUF4113) MQE20_10540 PF00817 impB/mucB/samB family MQE20_10540 PF11799 impB/mucB/samB family C-terminal domain MQE20_10545 PF01220 Dehydroquinase class II MQE20_10550 PF00364 Biotin-requiring enzyme MQE20_10555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MQE20_10555 PF02785 Biotin carboxylase C-terminal domain MQE20_10555 PF00289 Biotin carboxylase, N-terminal domain MQE20_10565 PF12832 MFS_1 like family MQE20_10635 PF08525 Opacity-associated protein A N-terminal motif MQE20_10635 PF01476 LysM domain MQE20_10635 PF01551 Peptidase family M23 MQE20_10670 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system MQE20_11015 PF08525 Opacity-associated protein A N-terminal motif MQE20_11015 PF01476 LysM domain MQE20_11015 PF01551 Peptidase family M23 MQE20_11050 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system MQE20_11340 PF01645 Conserved region in glutamate synthase MQE20_11355 PF01565 FAD binding domain MQE20_11355 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MQE20_11360 PF01451 Low molecular weight phosphotyrosine protein phosphatase MQE20_11370 PF00465 Iron-containing alcohol dehydrogenase MQE20_11375 PF03061 Thioesterase superfamily MQE20_11380 PF04185 Phosphoesterase family MQE20_11380 PF05506 Domain of unknown function (DUF756) MQE20_11385 PF12170 DNA polymerase III tau subunit V interacting with alpha MQE20_11385 PF12169 DNA polymerase III subunits gamma and tau domain III MQE20_11385 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MQE20_11390 PF07690 Major Facilitator Superfamily MQE20_11400 PF00144 Beta-lactamase MQE20_11405 PF01575 MaoC like domain MQE20_11415 PF02803 Thiolase, C-terminal domain MQE20_11415 PF00108 Thiolase, N-terminal domain MQE20_11425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_11425 PF03466 LysR substrate binding domain MQE20_11430 PF00923 Transaldolase/Fructose-6-phosphate aldolase MQE20_11435 PF01810 LysE type translocator MQE20_11440 PF01037 Lrp/AsnC ligand binding domain MQE20_11445 PF03594 Benzoate membrane transport protein MQE20_11450 PF02308 MgtC family MQE20_11455 PF00689 Cation transporting ATPase, C-terminus MQE20_11455 PF00690 Cation transporter/ATPase, N-terminus MQE20_11480 PF00582 Universal stress protein family MQE20_11485 PF12848 ABC transporter MQE20_11485 PF00005 ABC transporter MQE20_11505 PF07715 TonB-dependent Receptor Plug Domain MQE20_11505 PF00593 TonB dependent receptor MQE20_11540 PF00924 Mechanosensitive ion channel MQE20_11545 PF07715 TonB-dependent Receptor Plug Domain MQE20_11545 PF00593 TonB dependent receptor MQE20_11550 PF00440 Bacterial regulatory proteins, tetR family MQE20_11565 PF01037 Lrp/AsnC ligand binding domain MQE20_11570 PF01817 Chorismate mutase type II MQE20_11580 PF00106 short chain dehydrogenase MQE20_11590 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MQE20_11590 PF01433 Peptidase family M1 domain MQE20_11590 PF11940 Domain of unknown function (DUF3458) Ig-like fold MQE20_11605 PF02110 Hydroxyethylthiazole kinase family MQE20_11610 PF06445 GyrI-like small molecule binding domain MQE20_11620 PF14493 Helix-turn-helix domain MQE20_11620 PF05970 PIF1-like helicase MQE20_11625 PF00465 Iron-containing alcohol dehydrogenase MQE20_11640 PF00171 Aldehyde dehydrogenase family MQE20_11645 PF13520 Amino acid permease MQE20_11650 PF06751 Ethanolamine ammonia lyase large subunit (EutB) MQE20_11655 PF05985 Ethanolamine ammonia-lyase light chain (EutC) MQE20_11660 PF00117 Glutamine amidotransferase class-I MQE20_11660 PF00958 GMP synthase C terminal domain MQE20_11660 PF02540 NAD synthase MQE20_11665 PF00749 tRNA synthetases class I (E and Q), catalytic domain MQE20_11665 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MQE20_11670 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MQE20_11675 PF00149 Calcineurin-like phosphoesterase MQE20_11685 PF00881 Nitroreductase family MQE20_11695 PF17209 Hfq protein MQE20_11705 PF01119 DNA mismatch repair protein, C-terminal domain MQE20_11705 PF08676 MutL C terminal dimerisation domain MQE20_11710 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MQE20_11715 PF01479 S4 domain MQE20_11715 PF00849 RNA pseudouridylate synthase MQE20_11730 PF00849 RNA pseudouridylate synthase MQE20_11730 PF01479 S4 domain MQE20_11740 PF04284 Protein of unknown function (DUF441) MQE20_11745 PF03466 LysR substrate binding domain MQE20_11745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_11760 PF07690 Major Facilitator Superfamily MQE20_11765 PF00520 Ion transport protein MQE20_11765 PF00027 Cyclic nucleotide-binding domain MQE20_11775 PF00330 Aconitase family (aconitate hydratase) MQE20_11775 PF06434 Aconitate hydratase 2 N-terminus MQE20_11775 PF11791 Aconitate B N-terminal domain MQE20_11790 PF01103 Surface antigen MQE20_11790 PF07244 Surface antigen variable number repeat MQE20_11790 PF17243 POTRA domain TamA domain 1 MQE20_11795 PF07690 Major Facilitator Superfamily MQE20_11800 PF03232 Ubiquinone biosynthesis protein COQ7 MQE20_11810 PF00120 Glutamine synthetase, catalytic domain MQE20_11815 PF00486 Transcriptional regulatory protein, C terminal MQE20_11815 PF00072 Response regulator receiver domain MQE20_11820 PF13493 Domain of unknown function (DUF4118) MQE20_11820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_11820 PF00512 His Kinase A (phospho-acceptor) domain MQE20_11820 PF02702 Osmosensitive K+ channel His kinase sensor domain MQE20_11825 PF02669 K+-transporting ATPase, c chain MQE20_11835 PF03814 Potassium-transporting ATPase A subunit MQE20_11850 PF03109 ABC1 family MQE20_11855 PF00899 ThiF family MQE20_11860 PF01613 Flavin reductase like domain MQE20_11865 PF00501 AMP-binding enzyme MQE20_11865 PF13193 AMP-binding enzyme C-terminal domain MQE20_11870 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_11870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_11870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_11875 PF00106 short chain dehydrogenase MQE20_11880 PF12833 Helix-turn-helix domain MQE20_11885 PF09084 NMT1/THI5 like MQE20_11890 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_11895 PF17827 PrmC N-terminal domain MQE20_11895 PF13847 Methyltransferase domain MQE20_11900 PF03462 PCRF domain MQE20_11900 PF00472 RF-1 domain MQE20_11910 PF03466 LysR substrate binding domain MQE20_11910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_11925 PF00296 Luciferase-like monooxygenase MQE20_11935 PF13994 PgaD-like protein MQE20_11940 PF00535 Glycosyl transferase family 2 MQE20_11945 PF14883 Hypothetical glycosyl hydrolase family 13 MQE20_11945 PF01522 Polysaccharide deacetylase MQE20_11955 PF03618 Kinase/pyrophosphorylase MQE20_11960 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MQE20_11960 PF02896 PEP-utilising enzyme, TIM barrel domain MQE20_11960 PF00391 PEP-utilising enzyme, mobile domain MQE20_11970 PF06481 COX Aromatic Rich Motif MQE20_11970 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MQE20_11975 PF00115 Cytochrome C and Quinol oxidase polypeptide I MQE20_11980 PF00510 Cytochrome c oxidase subunit III MQE20_11985 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MQE20_11990 PF01040 UbiA prenyltransferase family MQE20_11995 PF01250 Ribosomal protein S6 MQE20_12000 PF01084 Ribosomal protein S18 MQE20_12005 PF01281 Ribosomal protein L9, N-terminal domain MQE20_12005 PF03948 Ribosomal protein L9, C-terminal domain MQE20_12010 PF03796 DnaB-like helicase C terminal domain MQE20_12010 PF00772 DnaB-like helicase N terminal domain MQE20_12015 PF01168 Alanine racemase, N-terminal domain MQE20_12015 PF00842 Alanine racemase, C-terminal domain MQE20_12025 PF08379 Bacterial transglutaminase-like N-terminal region MQE20_12025 PF01841 Transglutaminase-like superfamily MQE20_12035 PF14403 Circularly permuted ATP-grasp type 2 MQE20_12045 PF13932 GidA associated domain MQE20_12045 PF01134 Glucose inhibited division protein A MQE20_12065 PF02954 Bacterial regulatory protein, Fis family MQE20_12070 PF01808 AICARFT/IMPCHase bienzyme MQE20_12070 PF02142 MGS-like domain MQE20_12075 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MQE20_12075 PF02843 Phosphoribosylglycinamide synthetase, C domain MQE20_12075 PF02844 Phosphoribosylglycinamide synthetase, N domain MQE20_12080 PF03180 NLPA lipoprotein MQE20_12085 PF00005 ABC transporter MQE20_12085 PF09383 NIL domain MQE20_12090 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_12095 PF16123 Hydroxyacylglutathione hydrolase C-terminus MQE20_12095 PF00753 Metallo-beta-lactamase superfamily MQE20_12105 PF00375 Sodium:dicarboxylate symporter family MQE20_12120 PF13610 DDE domain MQE20_12130 PF06761 Intracellular multiplication and human macrophage-killing MQE20_12130 PF06744 Type VI secretion protein IcmF C-terminal MQE20_12130 PF14331 ImcF-related N-terminal domain MQE20_12145 PF05947 Type VI secretion system, TssF MQE20_12160 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath MQE20_12185 PF00005 ABC transporter MQE20_12190 PF00497 Bacterial extracellular solute-binding proteins, family 3 MQE20_12195 PF01425 Amidase MQE20_12200 PF01402 Ribbon-helix-helix protein, copG family MQE20_12200 PF08753 NikR C terminal nickel binding domain MQE20_12220 PF02525 Flavodoxin-like fold MQE20_12225 PF00289 Biotin carboxylase, N-terminal domain MQE20_12225 PF02785 Biotin carboxylase C-terminal domain MQE20_12225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MQE20_12240 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_12240 PF13823 Alcohol dehydrogenase GroES-associated MQE20_12240 PF00107 Zinc-binding dehydrogenase MQE20_12250 PF00440 Bacterial regulatory proteins, tetR family MQE20_12270 PF00654 Voltage gated chloride channel MQE20_12275 PF00364 Biotin-requiring enzyme MQE20_12275 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MQE20_12275 PF00289 Biotin carboxylase, N-terminal domain MQE20_12275 PF02785 Biotin carboxylase C-terminal domain MQE20_12285 PF07286 Protein of unknown function (DUF1445) MQE20_12290 PF03746 LamB/YcsF family MQE20_12295 PF01566 Natural resistance-associated macrophage protein MQE20_12300 PF03466 LysR substrate binding domain MQE20_12300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_12315 PF03527 RHS protein MQE20_12315 PF05593 RHS Repeat MQE20_12320 PF04717 Type VI secretion system, phage-baseplate injector MQE20_12320 PF13296 Putative type VI secretion system Rhs element Vgr MQE20_12320 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) MQE20_12330 PF13419 Haloacid dehalogenase-like hydrolase MQE20_12350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MQE20_12350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MQE20_12370 PF07690 Major Facilitator Superfamily MQE20_12385 PF03279 Bacterial lipid A biosynthesis acyltransferase MQE20_12390 PF03707 Bacterial signalling protein N terminal repeat MQE20_12390 PF00990 Diguanylate cyclase, GGDEF domain MQE20_12390 PF00563 EAL domain MQE20_12395 PF00892 EamA-like transporter family MQE20_12400 PF01037 Lrp/AsnC ligand binding domain MQE20_12405 PF05192 MutS domain III MQE20_12405 PF05188 MutS domain II MQE20_12405 PF01624 MutS domain I MQE20_12405 PF00488 MutS domain V MQE20_12405 PF05190 MutS family domain IV MQE20_12415 PF00037 4Fe-4S binding domain MQE20_12415 PF11953 Domain of unknown function (DUF3470) MQE20_12425 PF01596 O-methyltransferase MQE20_12435 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_12440 PF01205 Uncharacterized protein family UPF0029 MQE20_12450 PF00664 ABC transporter transmembrane region MQE20_12450 PF00005 ABC transporter MQE20_12450 PF03412 Peptidase C39 family MQE20_12470 PF00005 ABC transporter MQE20_12470 PF12399 Branched-chain amino acid ATP-binding cassette transporter MQE20_12475 PF03968 OstA-like protein MQE20_12490 PF01380 SIS domain MQE20_12490 PF00571 CBS domain MQE20_12495 PF01406 tRNA synthetases class I (C) catalytic domain MQE20_12495 PF09190 DALR domain MQE20_12520 PF01638 HxlR-like helix-turn-helix MQE20_12525 PF07690 Major Facilitator Superfamily MQE20_12550 PF03807 NADP oxidoreductase coenzyme F420-dependent MQE20_12550 PF14748 Pyrroline-5-carboxylate reductase dimerisation MQE20_12560 PF00313 'Cold-shock' DNA-binding domain MQE20_12565 PF01810 LysE type translocator MQE20_12595 PF13742 OB-fold nucleic acid binding domain MQE20_12595 PF02601 Exonuclease VII, large subunit MQE20_12630 PF00376 MerR family regulatory protein MQE20_12630 PF09278 MerR, DNA binding MQE20_12635 PF00403 Heavy-metal-associated domain MQE20_12640 PF00403 Heavy-metal-associated domain MQE20_12645 PF03466 LysR substrate binding domain MQE20_12645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_12655 PF00355 Rieske [2Fe-2S] domain MQE20_12655 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MQE20_12660 PF00866 Ring hydroxylating beta subunit MQE20_12665 PF00175 Oxidoreductase NAD-binding domain MQE20_12665 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE20_12665 PF00970 Oxidoreductase FAD-binding domain MQE20_12670 PF00106 short chain dehydrogenase MQE20_12675 PF03594 Benzoate membrane transport protein MQE20_12680 PF07690 Major Facilitator Superfamily MQE20_12690 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MQE20_12690 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MQE20_12695 PF00270 DEAD/DEAH box helicase MQE20_12695 PF00271 Helicase conserved C-terminal domain MQE20_12695 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MQE20_12695 PF04408 Helicase associated domain (HA2) MQE20_12695 PF11898 Domain of unknown function (DUF3418) MQE20_12700 PF10417 C-terminal domain of 1-Cys peroxiredoxin MQE20_12700 PF00578 AhpC/TSA family MQE20_12720 PF13192 Thioredoxin domain MQE20_12720 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_12730 PF00043 Glutathione S-transferase, C-terminal domain MQE20_12730 PF02798 Glutathione S-transferase, N-terminal domain MQE20_12740 PF02390 Putative methyltransferase MQE20_12745 PF00043 Glutathione S-transferase, C-terminal domain MQE20_12745 PF13417 Glutathione S-transferase, N-terminal domain MQE20_12755 PF00691 OmpA family MQE20_12755 PF13488 Glycine zipper MQE20_12760 PF01979 Amidohydrolase family MQE20_12765 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MQE20_12765 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MQE20_12775 PF01170 Putative RNA methylase family UPF0020 MQE20_12775 PF02926 THUMP domain MQE20_12775 PF10672 S-adenosylmethionine-dependent methyltransferase MQE20_12790 PF02861 Clp amino terminal domain, pathogenicity island component MQE20_12790 PF17871 AAA lid domain MQE20_12790 PF07724 AAA domain (Cdc48 subfamily) MQE20_12790 PF10431 C-terminal, D2-small domain, of ClpB protein MQE20_12790 PF00004 ATPase family associated with various cellular activities (AAA) MQE20_12805 PF02566 OsmC-like protein MQE20_12815 PF13545 Crp-like helix-turn-helix domain MQE20_12815 PF00027 Cyclic nucleotide-binding domain MQE20_12825 PF00248 Aldo/keto reductase family MQE20_12840 PF00709 Adenylosuccinate synthetase MQE20_12845 PF13393 Histidyl-tRNA synthetase MQE20_12850 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MQE20_12850 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MQE20_12855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MQE20_12855 PF01411 tRNA synthetases class II (A) MQE20_12855 PF02272 DHHA1 domain MQE20_12860 PF00696 Amino acid kinase family MQE20_12860 PF01842 ACT domain MQE20_12860 PF13840 ACT domain MQE20_12865 PF02599 Global regulator protein family MQE20_12870 PF01351 Ribonuclease HII MQE20_12880 PF01292 Prokaryotic cytochrome b561 MQE20_12885 PF00962 Adenosine/AMP deaminase MQE20_12895 PF13610 DDE domain MQE20_12910 PF13610 DDE domain MQE20_12915 PF02796 Helix-turn-helix domain of resolvase MQE20_12915 PF00239 Resolvase, N terminal domain MQE20_12925 PF13610 DDE domain MQE20_12935 PF00239 Resolvase, N terminal domain MQE20_12935 PF02796 Helix-turn-helix domain of resolvase MQE20_12940 PF13610 DDE domain MQE20_12950 PF04958 Arginine N-succinyltransferase beta subunit MQE20_12955 PF00202 Aminotransferase class-III MQE20_12965 PF00171 Aldehyde dehydrogenase family MQE20_12975 PF00392 Bacterial regulatory proteins, gntR family MQE20_12975 PF07729 FCD domain MQE20_12985 PF00324 Amino acid permease MQE20_12990 PF01266 FAD dependent oxidoreductase MQE20_12995 PF00324 Amino acid permease MQE20_13035 PF03527 RHS protein MQE20_13035 PF05593 RHS Repeat MQE20_13040 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) MQE20_13040 PF13296 Putative type VI secretion system Rhs element Vgr MQE20_13040 PF04717 Type VI secretion system, phage-baseplate injector MQE20_13060 PF03180 NLPA lipoprotein MQE20_13065 PF05987 Bacterial protein of unknown function (DUF898) MQE20_13080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE20_13080 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_13085 PF00764 Arginosuccinate synthase MQE20_13090 PF00990 Diguanylate cyclase, GGDEF domain MQE20_13090 PF00360 Phytochrome region MQE20_13090 PF01590 GAF domain MQE20_13090 PF00563 EAL domain MQE20_13095 PF01979 Amidohydrolase family MQE20_13100 PF00929 Exonuclease MQE20_13110 PF07715 TonB-dependent Receptor Plug Domain MQE20_13110 PF00593 TonB dependent receptor MQE20_13115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE20_13115 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_13120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MQE20_13120 PF00005 ABC transporter MQE20_13125 PF12911 N-terminal TM domain of oligopeptide transport permease C MQE20_13125 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_13130 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_13135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MQE20_13140 PF01464 Transglycosylase SLT domain MQE20_13140 PF01464 Transglycosylase SLT domain MQE20_13140 PF01476 LysM domain MQE20_13140 PF01476 LysM domain MQE20_13145 PF00929 Exonuclease MQE20_13155 PF00293 NUDIX domain MQE20_13155 PF09297 NADH pyrophosphatase zinc ribbon domain MQE20_13165 PF04972 BON domain MQE20_13170 PF02021 Uncharacterised protein family UPF0102 MQE20_13175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MQE20_13185 PF03466 LysR substrate binding domain MQE20_13185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_13190 PF01810 LysE type translocator MQE20_13200 PF13411 MerR HTH family regulatory protein MQE20_13210 PF01494 FAD binding domain MQE20_13215 PF01494 FAD binding domain MQE20_13220 PF00557 Metallopeptidase family M24 MQE20_13220 PF05195 Aminopeptidase P, N-terminal domain MQE20_13305 PF01551 Peptidase family M23 MQE20_13305 PF10145 Phage-related minor tail protein MQE20_13305 PF01464 Transglycosylase SLT domain MQE20_13365 PF04860 Phage portal protein MQE20_13465 PF00772 DnaB-like helicase N terminal domain MQE20_13465 PF03796 DnaB-like helicase C terminal domain MQE20_13480 PF01726 LexA DNA binding domain MQE20_13480 PF00717 Peptidase S24-like MQE20_13540 PF00884 Sulfatase MQE20_13540 PF08019 Phosphoethanolamine transferase EptA/EptB MQE20_13865 PF01812 5-formyltetrahydrofolate cyclo-ligase family MQE20_13870 PF00691 OmpA family MQE20_13870 PF04355 SmpA / OmlA family MQE20_13875 PF05662 Coiled stalk of trimeric autotransporter adhesin MQE20_13875 PF03895 YadA-like membrane anchor domain MQE20_13875 PF05658 Head domain of trimeric autotransporter adhesin MQE20_13875 PF13018 Extended Signal Peptide of Type V secretion system MQE20_13880 PF02190 ATP-dependent protease La (LON) substrate-binding domain MQE20_13880 PF00004 ATPase family associated with various cellular activities (AAA) MQE20_13880 PF05362 Lon protease (S16) C-terminal proteolytic domain MQE20_13885 PF02590 Predicted SPOUT methyltransferase MQE20_13890 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase MQE20_13900 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MQE20_13900 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MQE20_13905 PF04060 Putative Fe-S cluster MQE20_13910 PF00633 Helix-hairpin-helix motif MQE20_13910 PF10576 Iron-sulfur binding domain of endonuclease III MQE20_13910 PF00730 HhH-GPD superfamily base excision DNA repair protein MQE20_13920 PF05191 Adenylate kinase, active site lid MQE20_13935 PF00905 Penicillin binding protein transpeptidase domain MQE20_13935 PF03717 Penicillin-binding Protein dimerisation domain MQE20_13950 PF02492 CobW/HypB/UreG, nucleotide-binding domain MQE20_13955 PF01730 UreF MQE20_13960 PF05194 UreE urease accessory protein, C-terminal domain MQE20_13960 PF02814 UreE urease accessory protein, N-terminal domain MQE20_13965 PF01979 Amidohydrolase family MQE20_13965 PF00449 Urease alpha-subunit, N-terminal domain MQE20_13970 PF00699 Urease beta subunit MQE20_13975 PF00547 Urease, gamma subunit MQE20_13980 PF01774 UreD urease accessory protein MQE20_13995 PF00463 Isocitrate lyase family MQE20_14000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_14000 PF03466 LysR substrate binding domain MQE20_14005 PF00571 CBS domain MQE20_14005 PF03471 Transporter associated domain MQE20_14005 PF01595 Cyclin M transmembrane N-terminal domain MQE20_14010 PF03600 Citrate transporter MQE20_14025 PF00009 Elongation factor Tu GTP binding domain MQE20_14030 PF01507 Phosphoadenosine phosphosulfate reductase family MQE20_14040 PF14052 Capsule assembly protein Wzi MQE20_14050 PF00152 tRNA synthetases class II (D, K and N) MQE20_14050 PF01336 OB-fold nucleic acid binding domain MQE20_14065 PF00301 Rubredoxin MQE20_14070 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_14070 PF18113 Rubredoxin binding C-terminal domain MQE20_14075 PF00561 alpha/beta hydrolase fold MQE20_14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_14080 PF03466 LysR substrate binding domain MQE20_14090 PF02503 Polyphosphate kinase middle domain MQE20_14090 PF13090 Polyphosphate kinase C-terminal domain 2 MQE20_14090 PF17941 Polyphosphate kinase C-terminal domain 1 MQE20_14090 PF13089 Polyphosphate kinase N-terminal domain MQE20_14095 PF00912 Transglycosylase MQE20_14100 PF01694 Rhomboid family MQE20_14110 PF00005 ABC transporter MQE20_14115 PF13472 GDSL-like Lipase/Acylhydrolase family MQE20_14120 PF00484 Carbonic anhydrase MQE20_14125 PF00561 alpha/beta hydrolase fold MQE20_14135 PF07715 TonB-dependent Receptor Plug Domain MQE20_14135 PF00593 TonB dependent receptor MQE20_14140 PF01521 Iron-sulphur cluster biosynthesis MQE20_14140 PF01106 NifU-like domain MQE20_14150 PF00884 Sulfatase MQE20_14155 PF03781 Sulfatase-modifying factor enzyme 1 MQE20_14170 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_14175 PF01384 Phosphate transporter family MQE20_14180 PF02310 B12 binding domain MQE20_14180 PF02607 B12 binding domain MQE20_14180 PF02965 Vitamin B12 dependent methionine synthase, activation domain MQE20_14180 PF00809 Pterin binding enzyme MQE20_14180 PF02574 Homocysteine S-methyltransferase MQE20_14185 PF02779 Transketolase, pyrimidine binding domain MQE20_14185 PF02780 Transketolase, C-terminal domain MQE20_14190 PF00456 Transketolase, thiamine diphosphate binding domain MQE20_14195 PF07690 Major Facilitator Superfamily MQE20_14205 PF03466 LysR substrate binding domain MQE20_14205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_14215 PF01263 Aldose 1-epimerase MQE20_14220 PF07690 Major Facilitator Superfamily MQE20_14225 PF12833 Helix-turn-helix domain MQE20_14225 PF02311 AraC-like ligand binding domain MQE20_14230 PF04960 Glutaminase MQE20_14235 PF01327 Polypeptide deformylase MQE20_14240 PF07690 Major Facilitator Superfamily MQE20_14250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MQE20_14250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MQE20_14250 PF00205 Thiamine pyrophosphate enzyme, central domain MQE20_14255 PF00171 Aldehyde dehydrogenase family MQE20_14260 PF03447 Homoserine dehydrogenase, NAD binding domain MQE20_14260 PF01958 Domain of unknown function DUF108 MQE20_14270 PF12697 Alpha/beta hydrolase family MQE20_14280 PF07690 Major Facilitator Superfamily MQE20_14285 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_14285 PF14759 Reductase C-terminal MQE20_14290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MQE20_14300 PF00355 Rieske [2Fe-2S] domain MQE20_14310 PF00355 Rieske [2Fe-2S] domain MQE20_14315 PF09339 IclR helix-turn-helix domain MQE20_14315 PF01614 Bacterial transcriptional regulator MQE20_14330 PF00378 Enoyl-CoA hydratase/isomerase MQE20_14340 PF00535 Glycosyl transferase family 2 MQE20_14345 PF14883 Hypothetical glycosyl hydrolase family 13 MQE20_14345 PF01522 Polysaccharide deacetylase MQE20_14350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MQE20_14355 PF07152 YaeQ protein MQE20_14360 PF00375 Sodium:dicarboxylate symporter family MQE20_14365 PF02492 CobW/HypB/UreG, nucleotide-binding domain MQE20_14365 PF07683 Cobalamin synthesis protein cobW C-terminal domain MQE20_14375 PF03061 Thioesterase superfamily MQE20_14385 PF02028 BCCT, betaine/carnitine/choline family transporter MQE20_14390 PF02028 BCCT, betaine/carnitine/choline family transporter MQE20_14395 PF13977 BetI-type transcriptional repressor, C-terminal MQE20_14395 PF00440 Bacterial regulatory proteins, tetR family MQE20_14400 PF00171 Aldehyde dehydrogenase family MQE20_14405 PF05199 GMC oxidoreductase MQE20_14405 PF00732 GMC oxidoreductase MQE20_14410 PF06039 Malate:quinone oxidoreductase (Mqo) MQE20_14420 PF02574 Homocysteine S-methyltransferase MQE20_14425 PF13520 Amino acid permease MQE20_14450 PF01126 Heme oxygenase MQE20_14460 PF04575 Protein of unknown function (DUF560) MQE20_14470 PF07715 TonB-dependent Receptor Plug Domain MQE20_14470 PF00593 TonB dependent receptor MQE20_14480 PF04542 Sigma-70 region 2 MQE20_14480 PF08281 Sigma-70, region 4 MQE20_14490 PF00701 Dihydrodipicolinate synthetase family MQE20_14495 PF00083 Sugar (and other) transporter MQE20_14565 PF10544 T5orf172 domain MQE20_14570 PF13614 AAA domain MQE20_14590 PF00905 Penicillin binding protein transpeptidase domain MQE20_14610 PF10544 T5orf172 domain MQE20_14615 PF13614 AAA domain MQE20_14635 PF00905 Penicillin binding protein transpeptidase domain MQE20_14730 PF02768 DNA polymerase III beta subunit, C-terminal domain MQE20_14730 PF00712 DNA polymerase III beta subunit, N-terminal domain MQE20_14730 PF02767 DNA polymerase III beta subunit, central domain MQE20_14770 PF05016 ParE toxin of type II toxin-antitoxin system, parDE MQE20_14965 PF01695 IstB-like ATP binding protein MQE20_14975 PF01555 DNA methylase MQE20_15005 PF01555 DNA methylase MQE20_15010 PF00145 C-5 cytosine-specific DNA methylase MQE20_15080 PF00929 Exonuclease MQE20_15120 PF07690 Major Facilitator Superfamily MQE20_15125 PF13533 Biotin-lipoyl like MQE20_15130 PF03061 Thioesterase superfamily MQE20_15135 PF00490 Delta-aminolevulinic acid dehydratase MQE20_15140 PF01266 FAD dependent oxidoreductase MQE20_15145 PF08338 Domain of unknown function (DUF1731) MQE20_15145 PF01370 NAD dependent epimerase/dehydratase family MQE20_15165 PF00149 Calcineurin-like phosphoesterase MQE20_15165 PF12320 Type 5 capsule protein repressor C-terminal domain MQE20_15175 PF01168 Alanine racemase, N-terminal domain MQE20_15180 PF00437 Type II/IV secretion system protein MQE20_15185 PF00437 Type II/IV secretion system protein MQE20_15190 PF01475 Ferric uptake regulator family MQE20_15195 PF04355 SmpA / OmlA family MQE20_15200 PF03658 RnfH family Ubiquitin MQE20_15210 PF01814 Hemerythrin HHE cation binding domain MQE20_15215 PF13230 Glutamine amidotransferases class-II MQE20_15225 PF00696 Amino acid kinase family MQE20_15230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MQE20_15230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MQE20_15230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MQE20_15230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MQE20_15235 PF00692 dUTPase MQE20_15240 PF00580 UvrD/REP helicase N-terminal domain MQE20_15240 PF13361 UvrD-like helicase C-terminal domain MQE20_15245 PF13488 Glycine zipper MQE20_15245 PF00691 OmpA family MQE20_15250 PF01553 Acyltransferase MQE20_15260 PF03775 Septum formation inhibitor MinC, C-terminal domain MQE20_15265 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MQE20_15270 PF03776 Septum formation topological specificity factor MinE MQE20_15290 PF01810 LysE type translocator MQE20_15295 PF09397 Ftsk gamma domain MQE20_15295 PF17854 FtsK alpha domain MQE20_15295 PF01580 FtsK/SpoIIIE family MQE20_15295 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MQE20_15300 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE20_15305 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MQE20_15310 PF04376 Arginine-tRNA-protein transferase, N terminus MQE20_15310 PF04377 Arginine-tRNA-protein transferase, C terminus MQE20_15315 PF00583 Acetyltransferase (GNAT) family MQE20_15330 PF03144 Elongation factor Tu domain 2 MQE20_15330 PF00009 Elongation factor Tu GTP binding domain MQE20_15330 PF03143 Elongation factor Tu C-terminal domain MQE20_15335 PF00679 Elongation factor G C-terminus MQE20_15335 PF14492 Elongation Factor G, domain II MQE20_15335 PF03764 Elongation factor G, domain IV MQE20_15335 PF00009 Elongation factor Tu GTP binding domain MQE20_15335 PF03144 Elongation factor Tu domain 2 MQE20_15340 PF00177 Ribosomal protein S7p/S5e MQE20_15345 PF00164 Ribosomal protein S12/S23 MQE20_15355 PF00109 Beta-ketoacyl synthase, N-terminal domain MQE20_15355 PF02801 Beta-ketoacyl synthase, C-terminal domain MQE20_15360 PF03653 Uncharacterised protein family (UPF0093) MQE20_15365 PF05726 Pirin C-terminal cupin domain MQE20_15365 PF02678 Pirin MQE20_15375 PF02540 NAD synthase MQE20_15375 PF00795 Carbon-nitrogen hydrolase MQE20_15390 PF00970 Oxidoreductase FAD-binding domain MQE20_15390 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE20_15390 PF00175 Oxidoreductase NAD-binding domain MQE20_15395 PF00171 Aldehyde dehydrogenase family MQE20_15400 PF00355 Rieske [2Fe-2S] domain MQE20_15400 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MQE20_15405 PF07859 alpha/beta hydrolase fold MQE20_15410 PF02028 BCCT, betaine/carnitine/choline family transporter MQE20_15415 PF00180 Isocitrate/isopropylmalate dehydrogenase MQE20_15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_15420 PF03466 LysR substrate binding domain MQE20_15440 PF00037 4Fe-4S binding domain MQE20_15445 PF01467 Cytidylyltransferase-like MQE20_15450 PF01668 SmpB protein MQE20_15455 PF03358 NADPH-dependent FMN reductase MQE20_15460 PF02578 Multi-copper polyphenol oxidoreductase laccase MQE20_15465 PF01479 S4 domain MQE20_15465 PF00849 RNA pseudouridylate synthase MQE20_15470 PF13525 Outer membrane lipoprotein MQE20_15475 PF10410 DnaB-helicase binding domain of primase MQE20_15475 PF08278 DNA primase DnaG DnaB-binding MQE20_15475 PF08275 DNA primase catalytic core, N-terminal domain MQE20_15475 PF01807 CHC2 zinc finger MQE20_15480 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MQE20_15480 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MQE20_15480 PF01488 Shikimate / quinate 5-dehydrogenase MQE20_15490 PF03550 Outer membrane lipoprotein LolB MQE20_15495 PF08544 GHMP kinases C terminal MQE20_15495 PF00288 GHMP kinases N terminal domain MQE20_15520 PF14572 Phosphoribosyl synthetase-associated domain MQE20_15520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MQE20_15525 PF01386 Ribosomal L25p family MQE20_15530 PF01195 Peptidyl-tRNA hydrolase MQE20_15535 PF02261 Aspartate decarboxylase MQE20_15550 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MQE20_15560 PF08543 Phosphomethylpyrimidine kinase MQE20_15560 PF03070 TENA/THI-4/PQQC family MQE20_15560 PF02581 Thiamine monophosphate synthase MQE20_15565 PF04972 BON domain MQE20_15565 PF01476 LysM domain MQE20_15570 PF00550 Phosphopantetheine attachment site MQE20_15580 PF00698 Acyl transferase domain MQE20_15585 PF01783 Ribosomal L32p protein family MQE20_15590 PF02620 Large ribosomal RNA subunit accumulation protein YceD MQE20_15595 PF04315 Elongation factor P hydroxylase MQE20_15600 PF01300 Telomere recombination MQE20_15605 PF02616 Segregation and condensation protein ScpA MQE20_15610 PF04079 Segregation and condensation complex subunit ScpB MQE20_15615 PF00849 RNA pseudouridylate synthase MQE20_15615 PF01479 S4 domain MQE20_15630 PF00155 Aminotransferase class I and II MQE20_15635 PF00202 Aminotransferase class-III MQE20_15635 PF06968 Biotin and Thiamin Synthesis associated domain MQE20_15635 PF04055 Radical SAM superfamily MQE20_15640 PF12697 Alpha/beta hydrolase family MQE20_15640 PF08241 Methyltransferase domain MQE20_15645 PF02358 Trehalose-phosphatase MQE20_15650 PF00982 Glycosyltransferase family 20 MQE20_15655 PF07690 Major Facilitator Superfamily MQE20_15660 PF00210 Ferritin-like domain MQE20_15665 PF00533 BRCA1 C Terminus (BRCT) domain MQE20_15665 PF01653 NAD-dependent DNA ligase adenylation domain MQE20_15665 PF03120 NAD-dependent DNA ligase OB-fold domain MQE20_15665 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MQE20_15665 PF12826 Helix-hairpin-helix motif MQE20_15675 PF06470 SMC proteins Flexible Hinge Domain MQE20_15675 PF02463 RecF/RecN/SMC N terminal domain MQE20_15685 PF01925 Sulfite exporter TauE/SafE MQE20_15695 PF03309 Type III pantothenate kinase MQE20_15700 PF00448 SRP54-type protein, GTPase domain MQE20_15700 PF02881 SRP54-type protein, helical bundle domain MQE20_15700 PF02978 Signal peptide binding domain MQE20_15710 PF01207 Dihydrouridine synthase (Dus) MQE20_15740 PF00692 dUTPase MQE20_15755 PF01048 Phosphorylase superfamily MQE20_15760 PF10609 NUBPL iron-transfer P-loop NTPase MQE20_15770 PF09334 tRNA synthetases class I (M) MQE20_15770 PF01588 Putative tRNA binding domain MQE20_15795 PF13533 Biotin-lipoyl like MQE20_15800 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_15815 PF05552 Conserved TM helix MQE20_15830 PF00970 Oxidoreductase FAD-binding domain MQE20_15830 PF00175 Oxidoreductase NAD-binding domain MQE20_15835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_15835 PF03466 LysR substrate binding domain MQE20_15840 PF00313 'Cold-shock' DNA-binding domain MQE20_15850 PF00361 Proton-conducting membrane transporter MQE20_15855 PF00361 Proton-conducting membrane transporter MQE20_15860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MQE20_15860 PF00361 Proton-conducting membrane transporter MQE20_15865 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MQE20_15870 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MQE20_15875 PF12838 4Fe-4S dicluster domain MQE20_15880 PF00146 NADH dehydrogenase MQE20_15885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MQE20_15885 PF00384 Molybdopterin oxidoreductase MQE20_15885 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MQE20_15890 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MQE20_15890 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MQE20_15890 PF10531 SLBB domain MQE20_15900 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MQE20_15900 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MQE20_15905 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MQE20_15910 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MQE20_15915 PF17151 Periplasmic sensor domain MQE20_15915 PF00990 Diguanylate cyclase, GGDEF domain MQE20_15925 PF00672 HAMP domain MQE20_15925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_15925 PF00512 His Kinase A (phospho-acceptor) domain MQE20_15930 PF00072 Response regulator receiver domain MQE20_15930 PF00486 Transcriptional regulatory protein, C terminal MQE20_15940 PF02867 Ribonucleotide reductase, barrel domain MQE20_15940 PF00317 Ribonucleotide reductase, all-alpha domain MQE20_15940 PF03477 ATP cone domain MQE20_15950 PF00268 Ribonucleotide reductase, small chain MQE20_15960 PF00672 HAMP domain MQE20_15960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_15960 PF00512 His Kinase A (phospho-acceptor) domain MQE20_15960 PF13755 Sensor N-terminal transmembrane domain MQE20_15960 PF13756 Stimulus-sensing domain MQE20_16030 PF13360 PQQ-like domain MQE20_16030 PF01011 PQQ enzyme repeat MQE20_16055 PF02567 Phenazine biosynthesis-like protein MQE20_16080 PF01613 Flavin reductase like domain MQE20_16085 PF08267 Cobalamin-independent synthase, N-terminal domain MQE20_16085 PF01717 Cobalamin-independent synthase, Catalytic domain MQE20_16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_16095 PF03466 LysR substrate binding domain MQE20_16100 PF01810 LysE type translocator MQE20_16110 PF12833 Helix-turn-helix domain MQE20_16110 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MQE20_16115 PF07687 Peptidase dimerisation domain MQE20_16115 PF01546 Peptidase family M20/M25/M40 MQE20_16125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_16125 PF03466 LysR substrate binding domain MQE20_16130 PF07690 Major Facilitator Superfamily MQE20_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_16140 PF03466 LysR substrate binding domain MQE20_16145 PF14537 Cytochrome c3 MQE20_16145 PF00890 FAD binding domain MQE20_16155 PF02515 CoA-transferase family III MQE20_16160 PF07690 Major Facilitator Superfamily MQE20_16165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_16165 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_16165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_16170 PF03466 LysR substrate binding domain MQE20_16170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_16175 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_16175 PF00107 Zinc-binding dehydrogenase MQE20_16180 PF00962 Adenosine/AMP deaminase MQE20_16205 PF02445 Quinolinate synthetase A protein MQE20_16210 PF01960 ArgJ family MQE20_16215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MQE20_16215 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MQE20_16220 PF00893 Small Multidrug Resistance protein MQE20_16230 PF05275 Copper resistance protein B precursor (CopB) MQE20_16235 PF07731 Multicopper oxidase MQE20_16235 PF00394 Multicopper oxidase MQE20_16235 PF07732 Multicopper oxidase MQE20_16250 PF00834 Ribulose-phosphate 3 epimerase family MQE20_16260 PF00756 Putative esterase MQE20_16270 PF04445 Putative SAM-dependent methyltransferase MQE20_16275 PF00814 Glycoprotease family MQE20_16280 PF00132 Bacterial transferase hexapeptide (six repeats) MQE20_16285 PF00293 NUDIX domain MQE20_16330 PF04715 Anthranilate synthase component I, N terminal region MQE20_16330 PF00425 chorismate binding enzyme MQE20_16335 PF00155 Aminotransferase class I and II MQE20_16340 PF00815 Histidinol dehydrogenase MQE20_16345 PF01634 ATP phosphoribosyltransferase MQE20_16350 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MQE20_16355 PF01722 BolA-like protein MQE20_16360 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MQE20_16365 PF00309 Sigma-54 factor, Activator interacting domain (AID) MQE20_16365 PF04963 Sigma-54 factor, core binding domain MQE20_16365 PF04552 Sigma-54, DNA binding domain MQE20_16410 PF00795 Carbon-nitrogen hydrolase MQE20_16420 PF01047 MarR family MQE20_16425 PF02566 OsmC-like protein MQE20_16430 PF00437 Type II/IV secretion system protein MQE20_16450 PF01367 5'-3' exonuclease, C-terminal SAM fold MQE20_16450 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MQE20_16450 PF00476 DNA polymerase family A MQE20_16450 PF01612 3'-5' exonuclease MQE20_16455 PF02325 YGGT family MQE20_16460 PF14748 Pyrroline-5-carboxylate reductase dimerisation MQE20_16460 PF03807 NADP oxidoreductase coenzyme F420-dependent MQE20_16465 PF09179 TilS substrate binding domain MQE20_16465 PF11734 TilS substrate C-terminal domain MQE20_16465 PF01171 PP-loop family MQE20_16470 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MQE20_16475 PF02541 Ppx/GppA phosphatase family MQE20_16480 PF00085 Thioredoxin MQE20_16485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MQE20_16485 PF07498 Rho termination factor, N-terminal domain MQE20_16485 PF07497 Rho termination factor, RNA-binding domain MQE20_16500 PF00216 Bacterial DNA-binding protein MQE20_16505 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MQE20_16505 PF01588 Putative tRNA binding domain MQE20_16505 PF03483 B3/4 domain MQE20_16505 PF03484 tRNA synthetase B5 domain MQE20_16505 PF03147 Ferredoxin-fold anticodon binding domain MQE20_16510 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MQE20_16510 PF01409 tRNA synthetases class II core domain (F) MQE20_16530 PF00453 Ribosomal protein L20 MQE20_16535 PF01632 Ribosomal protein L35 MQE20_16545 PF07690 Major Facilitator Superfamily MQE20_16550 PF09335 SNARE associated Golgi protein MQE20_16555 PF02798 Glutathione S-transferase, N-terminal domain MQE20_16555 PF00043 Glutathione S-transferase, C-terminal domain MQE20_16560 PF00707 Translation initiation factor IF-3, C-terminal domain MQE20_16560 PF05198 Translation initiation factor IF-3, N-terminal domain MQE20_16565 PF03129 Anticodon binding domain MQE20_16565 PF02824 TGS domain MQE20_16565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MQE20_16565 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MQE20_16570 PF13193 AMP-binding enzyme C-terminal domain MQE20_16570 PF00501 AMP-binding enzyme MQE20_16575 PF04751 Protein of unknown function (DUF615) MQE20_16580 PF00381 PTS HPr component phosphorylation site MQE20_16585 PF03668 P-loop ATPase protein family MQE20_16590 PF02569 Pantoate-beta-alanine ligase MQE20_16595 PF02548 Ketopantoate hydroxymethyltransferase MQE20_16600 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MQE20_16605 PF01743 Poly A polymerase head domain MQE20_16605 PF12627 Probable RNA and SrmB- binding site of polymerase A MQE20_16605 PF12626 Polymerase A arginine-rich C-terminus MQE20_16615 PF03819 MazG nucleotide pyrophosphohydrolase domain MQE20_16625 PF02824 TGS domain MQE20_16625 PF04607 Region found in RelA / SpoT proteins MQE20_16625 PF13291 ACT domain MQE20_16630 PF05958 tRNA (Uracil-5-)-methyltransferase MQE20_16640 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_16645 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MQE20_16645 PF00072 Response regulator receiver domain MQE20_16645 PF00672 HAMP domain MQE20_16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_16645 PF00512 His Kinase A (phospho-acceptor) domain MQE20_16645 PF01627 Hpt domain MQE20_16650 PF00378 Enoyl-CoA hydratase/isomerase MQE20_16655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MQE20_16655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MQE20_16660 PF01261 Xylose isomerase-like TIM barrel MQE20_16670 PF00106 short chain dehydrogenase MQE20_16675 PF02233 NAD(P) transhydrogenase beta subunit MQE20_16680 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MQE20_16685 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MQE20_16685 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MQE20_16690 PF00892 EamA-like transporter family MQE20_16700 PF07690 Major Facilitator Superfamily MQE20_16705 PF01207 Dihydrouridine synthase (Dus) MQE20_16715 PF03466 LysR substrate binding domain MQE20_16715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_16725 PF00899 ThiF family MQE20_16735 PF00330 Aconitase family (aconitate hydratase) MQE20_16735 PF00694 Aconitase C-terminal domain MQE20_16740 PF01026 TatD related DNase MQE20_16755 PF00009 Elongation factor Tu GTP binding domain MQE20_16755 PF03144 Elongation factor Tu domain 2 MQE20_16755 PF16658 Class II release factor RF3, C-terminal domain MQE20_16775 PF00990 Diguanylate cyclase, GGDEF domain MQE20_16775 PF03707 Bacterial signalling protein N terminal repeat MQE20_16775 PF00563 EAL domain MQE20_16780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MQE20_16780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MQE20_16785 PF10369 Small subunit of acetolactate synthase MQE20_16790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MQE20_16790 PF00205 Thiamine pyrophosphate enzyme, central domain MQE20_16790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MQE20_16800 PF08264 Anticodon-binding domain of tRNA MQE20_16800 PF00133 tRNA synthetases class I (I, L, M and V) MQE20_16800 PF13603 Leucyl-tRNA synthetase, Domain 2 MQE20_16800 PF09334 tRNA synthetases class I (M) MQE20_16815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE20_16820 PF12704 MacB-like periplasmic core domain MQE20_16820 PF02687 FtsX-like permease family MQE20_16820 PF00005 ABC transporter MQE20_16825 PF02321 Outer membrane efflux protein MQE20_16840 PF00929 Exonuclease MQE20_16845 PF03193 RsgA GTPase MQE20_16855 PF00462 Glutaredoxin MQE20_16860 PF02556 Preprotein translocase subunit SecB MQE20_16875 PF00109 Beta-ketoacyl synthase, N-terminal domain MQE20_16875 PF02801 Beta-ketoacyl synthase, C-terminal domain MQE20_16890 PF00109 Beta-ketoacyl synthase, N-terminal domain MQE20_16890 PF02801 Beta-ketoacyl synthase, C-terminal domain MQE20_16900 PF04820 Tryptophan halogenase MQE20_16920 PF00221 Aromatic amino acid lyase MQE20_16935 PF13193 AMP-binding enzyme C-terminal domain MQE20_16935 PF00501 AMP-binding enzyme MQE20_16945 PF00550 Phosphopantetheine attachment site MQE20_16950 PF00550 Phosphopantetheine attachment site MQE20_16965 PF01926 50S ribosome-binding GTPase MQE20_16965 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MQE20_16970 PF13360 PQQ-like domain MQE20_16980 PF03129 Anticodon binding domain MQE20_16980 PF13393 Histidyl-tRNA synthetase MQE20_16985 PF04551 GcpE protein MQE20_16990 PF13464 Domain of unknown function (DUF4115) MQE20_17000 PF04055 Radical SAM superfamily MQE20_17005 PF00334 Nucleoside diphosphate kinase MQE20_17010 PF04384 Iron-sulphur cluster assembly MQE20_17015 PF01569 PAP2 superfamily MQE20_17020 PF13439 Glycosyltransferase Family 4 MQE20_17020 PF00534 Glycosyl transferases group 1 MQE20_17025 PF17804 Tail specific protease N-terminal domain MQE20_17025 PF03572 Peptidase family S41 MQE20_17025 PF00595 PDZ domain MQE20_17025 PF11818 C-terminal domain of tail specific protease (DUF3340) MQE20_17030 PF00933 Glycosyl hydrolase family 3 N terminal domain MQE20_17040 PF00561 alpha/beta hydrolase fold MQE20_17045 PF00171 Aldehyde dehydrogenase family MQE20_17050 PF00171 Aldehyde dehydrogenase family MQE20_17055 PF01202 Shikimate kinase MQE20_17060 PF02447 GntP family permease MQE20_17065 PF01081 KDPG and KHG aldolase MQE20_17070 PF00920 Dehydratase family MQE20_17075 PF00871 Acetokinase family MQE20_17080 PF01515 Phosphate acetyl/butaryl transferase MQE20_17080 PF07085 DRTGG domain MQE20_17085 PF05681 Fumarate hydratase (Fumerase) MQE20_17085 PF05683 Fumarase C-terminus MQE20_17100 PF07724 AAA domain (Cdc48 subfamily) MQE20_17100 PF10431 C-terminal, D2-small domain, of ClpB protein MQE20_17100 PF06689 ClpX C4-type zinc finger MQE20_17105 PF00574 Clp protease MQE20_17110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MQE20_17110 PF05698 Bacterial trigger factor protein (TF) C-terminus MQE20_17110 PF05697 Bacterial trigger factor protein (TF) MQE20_17115 PF00593 TonB dependent receptor MQE20_17115 PF07715 TonB-dependent Receptor Plug Domain MQE20_17120 PF18331 PKHD-type hydroxylase C-terminal domain MQE20_17120 PF13640 2OG-Fe(II) oxygenase superfamily MQE20_17125 PF00682 HMGL-like MQE20_17125 PF08502 LeuA allosteric (dimerisation) domain MQE20_17130 PF00561 alpha/beta hydrolase fold MQE20_17135 PF00561 alpha/beta hydrolase fold MQE20_17135 PF07021 Methionine biosynthesis protein MetW MQE20_17145 PF01725 Ham1 family MQE20_17155 PF02416 mttA/Hcf106 family MQE20_17160 PF02416 mttA/Hcf106 family MQE20_17165 PF00902 Sec-independent protein translocase protein (TatC) MQE20_17185 PF01790 Prolipoprotein diacylglyceryl transferase MQE20_17200 PF00303 Thymidylate synthase MQE20_17205 PF00186 Dihydrofolate reductase MQE20_17215 PF01625 Peptide methionine sulfoxide reductase MQE20_17225 PF01618 MotA/TolQ/ExbB proton channel family MQE20_17235 PF01842 ACT domain MQE20_17235 PF00551 Formyl transferase MQE20_17245 PF00171 Aldehyde dehydrogenase family MQE20_17250 PF00830 Ribosomal L28 family MQE20_17255 PF00471 Ribosomal protein L33 MQE20_17260 PF02254 TrkA-N domain MQE20_17260 PF00999 Sodium/hydrogen exchanger family MQE20_17280 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MQE20_17285 PF13361 UvrD-like helicase C-terminal domain MQE20_17285 PF00580 UvrD/REP helicase N-terminal domain MQE20_17300 PF08272 Topoisomerase I zinc-ribbon-like MQE20_17300 PF01131 DNA topoisomerase MQE20_17300 PF01751 Toprim domain MQE20_17300 PF01396 Topoisomerase DNA binding C4 zinc finger MQE20_17310 PF01638 HxlR-like helix-turn-helix MQE20_17315 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_17315 PF00107 Zinc-binding dehydrogenase MQE20_17320 PF04102 SlyX MQE20_17325 PF00005 ABC transporter MQE20_17325 PF16326 ABC transporter C-terminal domain MQE20_17325 PF12848 ABC transporter MQE20_17330 PF01810 LysE type translocator MQE20_17335 PF03279 Bacterial lipid A biosynthesis acyltransferase MQE20_17345 PF00375 Sodium:dicarboxylate symporter family MQE20_17355 PF01118 Semialdehyde dehydrogenase, NAD binding domain MQE20_17355 PF02774 Semialdehyde dehydrogenase, dimerisation domain MQE20_17375 PF01416 tRNA pseudouridine synthase MQE20_17385 PF01176 Translation initiation factor 1A / IF-1 MQE20_17400 PF00180 Isocitrate/isopropylmalate dehydrogenase MQE20_17410 PF00694 Aconitase C-terminal domain MQE20_17415 PF00330 Aconitase family (aconitate hydratase) MQE20_17425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_17425 PF03466 LysR substrate binding domain MQE20_17445 PF00293 NUDIX domain MQE20_17450 PF01590 GAF domain MQE20_17450 PF02896 PEP-utilising enzyme, TIM barrel domain MQE20_17450 PF05524 PEP-utilising enzyme, N-terminal MQE20_17450 PF00391 PEP-utilising enzyme, mobile domain MQE20_17455 PF00141 Peroxidase MQE20_17460 PF12706 Beta-lactamase superfamily domain MQE20_17465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_17465 PF03466 LysR substrate binding domain MQE20_17475 PF02798 Glutathione S-transferase, N-terminal domain MQE20_17480 PF08279 HTH domain MQE20_17480 PF13280 WYL domain MQE20_17485 PF13419 Haloacid dehalogenase-like hydrolase MQE20_17490 PF00849 RNA pseudouridylate synthase MQE20_17490 PF01479 S4 domain MQE20_17495 PF12111 Polyribonucleotide phosphorylase C terminal MQE20_17495 PF10150 Ribonuclease E/G family MQE20_17495 PF00575 S1 RNA binding domain MQE20_17500 PF13193 AMP-binding enzyme C-terminal domain MQE20_17500 PF00501 AMP-binding enzyme MQE20_17515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_17515 PF03466 LysR substrate binding domain MQE20_17520 PF00106 short chain dehydrogenase MQE20_17525 PF06969 HemN C-terminal domain MQE20_17525 PF04055 Radical SAM superfamily MQE20_17535 PF01554 MatE MQE20_17540 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_17540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_17540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MQE20_17545 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MQE20_17545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_17550 PF03109 ABC1 family MQE20_17555 PF01197 Ribosomal protein L31 MQE20_17570 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MQE20_17590 PF03884 DNA gyrase inhibitor YacG MQE20_17595 PF00753 Metallo-beta-lactamase superfamily MQE20_17600 PF00762 Ferrochelatase MQE20_17610 PF01177 Asp/Glu/Hydantoin racemase MQE20_17625 PF01206 Sulfurtransferase TusA MQE20_17630 PF03471 Transporter associated domain MQE20_17630 PF00571 CBS domain MQE20_17635 PF00795 Carbon-nitrogen hydrolase MQE20_17640 PF01588 Putative tRNA binding domain MQE20_17650 PF08334 Type II secretion system (T2SS), protein G MQE20_17650 PF07963 Prokaryotic N-terminal methylation motif MQE20_17655 PF00482 Type II secretion system (T2SS), protein F MQE20_17660 PF17764 3′ DNA-binding domain (3′BD) MQE20_17660 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MQE20_17660 PF00270 DEAD/DEAH box helicase MQE20_17660 PF00271 Helicase conserved C-terminal domain MQE20_17660 PF18074 Primosomal protein N C-terminal domain MQE20_17665 PF02254 TrkA-N domain MQE20_17665 PF00999 Sodium/hydrogen exchanger family MQE20_17670 PF01430 Hsp33 protein MQE20_17680 PF01556 DnaJ C terminal domain MQE20_17680 PF00226 DnaJ domain MQE20_17690 PF01544 CorA-like Mg2+ transporter protein MQE20_17695 PF00575 S1 RNA binding domain MQE20_17695 PF03725 3' exoribonuclease family, domain 2 MQE20_17695 PF01138 3' exoribonuclease family, domain 1 MQE20_17695 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MQE20_17695 PF00013 KH domain MQE20_17700 PF00312 Ribosomal protein S15 MQE20_17705 PF00144 Beta-lactamase MQE20_17710 PF13538 UvrD-like helicase C-terminal domain MQE20_17715 PF13361 UvrD-like helicase C-terminal domain MQE20_17715 PF12705 PD-(D/E)XK nuclease superfamily MQE20_17715 PF00580 UvrD/REP helicase N-terminal domain MQE20_17720 PF17946 RecC C-terminal domain MQE20_17730 PF03976 Polyphosphate kinase 2 (PPK2) MQE20_17740 PF01209 ubiE/COQ5 methyltransferase family MQE20_17750 PF03109 ABC1 family MQE20_17755 PF01494 FAD binding domain MQE20_17760 PF01502 Phosphoribosyl-AMP cyclohydrolase MQE20_17775 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MQE20_17775 PF00361 Proton-conducting membrane transporter MQE20_17775 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter MQE20_17775 PF13244 Domain of unknown function (DUF4040) MQE20_17780 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MQE20_17785 PF00361 Proton-conducting membrane transporter MQE20_17790 PF01899 Na+/H+ ion antiporter subunit MQE20_17795 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) MQE20_17800 PF03334 Na+/H+ antiporter subunit MQE20_17805 PF02033 Ribosome-binding factor A MQE20_17810 PF00009 Elongation factor Tu GTP binding domain MQE20_17810 PF11987 Translation-initiation factor 2 MQE20_17810 PF08364 Bacterial translation initiation factor IF-2 associated region MQE20_17810 PF04760 Translation initiation factor IF-2, N-terminal region MQE20_17815 PF13184 NusA-like KH domain MQE20_17815 PF08529 NusA N-terminal domain MQE20_17815 PF00575 S1 RNA binding domain MQE20_17820 PF02576 RimP N-terminal domain MQE20_17820 PF17384 RimP C-terminal SH3 domain MQE20_17840 PF03840 Preprotein translocase SecG subunit MQE20_17845 PF00121 Triosephosphate isomerase MQE20_17850 PF00437 Type II/IV secretion system protein MQE20_17850 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MQE20_17855 PF00482 Type II secretion system (T2SS), protein F MQE20_17865 PF06750 Bacterial Peptidase A24 N-terminal domain MQE20_17865 PF01478 Type IV leader peptidase family MQE20_17870 PF01121 Dephospho-CoA kinase MQE20_17880 PF00588 SpoU rRNA Methylase family MQE20_17880 PF08032 RNA 2'-O ribose methyltransferase substrate binding MQE20_17885 PF06865 Pyrimidine/purine nucleoside phosphorylase MQE20_17895 PF02463 RecF/RecN/SMC N terminal domain MQE20_17900 PF02622 Uncharacterized ACR, COG1678 MQE20_17905 PF03652 Holliday junction resolvase MQE20_17910 PF13533 Biotin-lipoyl like MQE20_17935 PF02805 Metal binding domain of Ada MQE20_17935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MQE20_17935 PF12833 Helix-turn-helix domain MQE20_17935 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MQE20_17940 PF01066 CDP-alcohol phosphatidyltransferase MQE20_17950 PF01541 GIY-YIG catalytic domain MQE20_17950 PF02151 UvrB/uvrC motif MQE20_17950 PF08459 UvrC Helix-hairpin-helix N-terminal MQE20_17970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MQE20_17970 PF00378 Enoyl-CoA hydratase/isomerase MQE20_17970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MQE20_17975 PF02803 Thiolase, C-terminal domain MQE20_17975 PF00108 Thiolase, N-terminal domain MQE20_17995 PF09278 MerR, DNA binding MQE20_17995 PF00376 MerR family regulatory protein MQE20_18005 PF01323 DSBA-like thioredoxin domain MQE20_18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_18020 PF00183 Hsp90 protein MQE20_18035 PF13726 Na+-H+ antiporter family MQE20_18035 PF03553 Na+/H+ antiporter family MQE20_18040 PF00561 alpha/beta hydrolase fold MQE20_18060 PF00623 RNA polymerase Rpb1, domain 2 MQE20_18060 PF04998 RNA polymerase Rpb1, domain 5 MQE20_18060 PF04997 RNA polymerase Rpb1, domain 1 MQE20_18060 PF04983 RNA polymerase Rpb1, domain 3 MQE20_18060 PF05000 RNA polymerase Rpb1, domain 4 MQE20_18065 PF04563 RNA polymerase beta subunit MQE20_18065 PF04561 RNA polymerase Rpb2, domain 2 MQE20_18065 PF04565 RNA polymerase Rpb2, domain 3 MQE20_18065 PF10385 RNA polymerase beta subunit external 1 domain MQE20_18065 PF00562 RNA polymerase Rpb2, domain 6 MQE20_18065 PF04560 RNA polymerase Rpb2, domain 7 MQE20_18070 PF00542 Ribosomal protein L7/L12 C-terminal domain MQE20_18070 PF16320 Ribosomal protein L7/L12 dimerisation domain MQE20_18075 PF00466 Ribosomal protein L10 MQE20_18080 PF00687 Ribosomal protein L1p/L10e family MQE20_18085 PF00298 Ribosomal protein L11, RNA binding domain MQE20_18085 PF03946 Ribosomal protein L11, N-terminal domain MQE20_18090 PF00467 KOW motif MQE20_18090 PF02357 Transcription termination factor nusG MQE20_18095 PF00584 SecE/Sec61-gamma subunits of protein translocation complex MQE20_18105 PF03144 Elongation factor Tu domain 2 MQE20_18105 PF00009 Elongation factor Tu GTP binding domain MQE20_18105 PF03143 Elongation factor Tu C-terminal domain MQE20_18130 PF00425 chorismate binding enzyme MQE20_18130 PF04715 Anthranilate synthase component I, N terminal region MQE20_18135 PF13419 Haloacid dehalogenase-like hydrolase MQE20_18140 PF00498 FHA domain MQE20_18140 PF12401 Protein of unknown function (DUF2662) MQE20_18145 PF00263 Bacterial type II and III secretion system protein MQE20_18145 PF03958 Bacterial type II/III secretion system short domain MQE20_18160 PF00816 H-NS histone family MQE20_18185 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MQE20_18185 PF03900 Porphobilinogen deaminase, C-terminal domain MQE20_18190 PF04397 LytTr DNA-binding domain MQE20_18190 PF00072 Response regulator receiver domain MQE20_18195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_18195 PF06580 Histidine kinase MQE20_18195 PF07694 5TMR of 5TMR-LYT MQE20_18200 PF14698 Argininosuccinate lyase C-terminal MQE20_18200 PF00206 Lyase MQE20_18205 PF04362 Bacterial Fe(2+) trafficking MQE20_18210 PF01895 PhoU domain MQE20_18215 PF02321 Outer membrane efflux protein MQE20_18220 PF00892 EamA-like transporter family MQE20_18235 PF01964 Radical SAM ThiC family MQE20_18235 PF13667 ThiC-associated domain MQE20_18240 PF00293 NUDIX domain MQE20_18245 PF00149 Calcineurin-like phosphoesterase MQE20_18250 PF01258 Prokaryotic dksA/traR C4-type zinc finger MQE20_18255 PF00749 tRNA synthetases class I (E and Q), catalytic domain MQE20_18260 PF01098 Cell cycle protein MQE20_18265 PF02875 Mur ligase family, glutamate ligase domain MQE20_18265 PF08245 Mur ligase middle domain MQE20_18275 PF07664 Ferrous iron transport protein B C terminus MQE20_18275 PF02421 Ferrous iron transport protein B MQE20_18275 PF07670 Nucleoside recognition MQE20_18285 PF02899 Phage integrase, N-terminal SAM-like domain MQE20_18285 PF00589 Phage integrase family MQE20_18290 PF13098 Thioredoxin-like domain MQE20_18290 PF10411 Disulfide bond isomerase protein N-terminus MQE20_18295 PF01842 ACT domain MQE20_18295 PF00742 Homoserine dehydrogenase MQE20_18295 PF03447 Homoserine dehydrogenase, NAD binding domain MQE20_18300 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_18305 PF00768 D-alanyl-D-alanine carboxypeptidase MQE20_18310 PF00072 Response regulator receiver domain MQE20_18310 PF00196 Bacterial regulatory proteins, luxR family MQE20_18315 PF00512 His Kinase A (phospho-acceptor) domain MQE20_18315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE20_18320 PF00158 Sigma-54 interaction domain MQE20_18320 PF00072 Response regulator receiver domain MQE20_18320 PF02954 Bacterial regulatory protein, Fis family MQE20_18325 PF03572 Peptidase family S41 MQE20_18325 PF00595 PDZ domain MQE20_18330 PF01676 Metalloenzyme superfamily MQE20_18330 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MQE20_18335 PF03739 Lipopolysaccharide export system permease LptF/LptG MQE20_18345 PF00883 Cytosol aminopeptidase family, catalytic domain MQE20_18345 PF02789 Cytosol aminopeptidase family, N-terminal domain MQE20_18365 PF00677 Lumazine binding domain MQE20_18375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MQE20_18375 PF01872 RibD C-terminal domain MQE20_18380 PF03477 ATP cone domain MQE20_18385 PF00909 Ammonium Transporter Family MQE20_18390 PF00543 Nitrogen regulatory protein P-II MQE20_18410 PF01636 Phosphotransferase enzyme family MQE20_18415 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase MQE20_18435 PF02909 Tetracyclin repressor-like, C-terminal domain MQE20_18435 PF00440 Bacterial regulatory proteins, tetR family MQE20_18440 PF07690 Major Facilitator Superfamily MQE20_18450 PF00916 Sulfate permease family MQE20_18450 PF01740 STAS domain MQE20_18455 PF00582 Universal stress protein family MQE20_18475 PF00665 Integrase core domain MQE20_18500 PF00589 Phage integrase family MQE20_18500 PF02899 Phage integrase, N-terminal SAM-like domain MQE20_18530 PF00916 Sulfate permease family MQE20_18530 PF01740 STAS domain MQE20_18535 PF00582 Universal stress protein family MQE20_18565 PF00665 Integrase core domain MQE20_18580 PF00392 Bacterial regulatory proteins, gntR family MQE20_18580 PF00155 Aminotransferase class I and II MQE20_18590 PF00701 Dihydrodipicolinate synthetase family MQE20_18605 PF03573 outer membrane porin, OprD family MQE20_18610 PF00719 Inorganic pyrophosphatase MQE20_18625 PF13193 AMP-binding enzyme C-terminal domain MQE20_18625 PF00501 AMP-binding enzyme MQE20_18630 PF03989 DNA gyrase C-terminal domain, beta-propeller MQE20_18630 PF00521 DNA gyrase/topoisomerase IV, subunit A MQE20_18635 PF07690 Major Facilitator Superfamily MQE20_18640 PF03458 UPF0126 domain MQE20_18645 PF02810 SEC-C motif MQE20_18650 PF03471 Transporter associated domain MQE20_18650 PF03741 Integral membrane protein TerC family MQE20_18655 PF03641 Possible lysine decarboxylase MQE20_18660 PF07690 Major Facilitator Superfamily MQE20_18670 PF11799 impB/mucB/samB family C-terminal domain MQE20_18670 PF11798 IMS family HHH motif MQE20_18670 PF00817 impB/mucB/samB family MQE20_18690 PF11842 Domain of unknown function (DUF3362) MQE20_18690 PF04055 Radical SAM superfamily MQE20_18690 PF08497 Radical SAM N-terminal MQE20_18710 PF03358 NADPH-dependent FMN reductase MQE20_18720 PF00291 Pyridoxal-phosphate dependent enzyme MQE20_18780 PF01327 Polypeptide deformylase MQE20_18790 PF02481 DNA recombination-mediator protein A MQE20_18790 PF17782 DprA winged helix domain MQE20_18795 PF01300 Telomere recombination MQE20_18800 PF00892 EamA-like transporter family MQE20_18805 PF00440 Bacterial regulatory proteins, tetR family MQE20_18810 PF07690 Major Facilitator Superfamily MQE20_18820 PF00255 Glutathione peroxidase MQE20_18830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MQE20_18835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MQE20_18835 PF02874 ATP synthase alpha/beta family, beta-barrel domain MQE20_18840 PF00231 ATP synthase MQE20_18845 PF02874 ATP synthase alpha/beta family, beta-barrel domain MQE20_18845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MQE20_18845 PF00306 ATP synthase alpha/beta chain, C terminal domain MQE20_18850 PF00213 ATP synthase delta (OSCP) subunit MQE20_18855 PF00430 ATP synthase B/B' CF(0) MQE20_18860 PF00137 ATP synthase subunit C MQE20_18865 PF00119 ATP synthase A chain MQE20_18885 PF00005 ABC transporter MQE20_18890 PF00950 ABC 3 transport family MQE20_18895 PF01810 LysE type translocator MQE20_18900 PF04261 Dyp-type peroxidase family MQE20_18910 PF00390 Malic enzyme, N-terminal domain MQE20_18910 PF03949 Malic enzyme, NAD binding domain MQE20_18915 PF03485 Arginyl tRNA synthetase N terminal domain MQE20_18915 PF05746 DALR anticodon binding domain MQE20_18915 PF00750 tRNA synthetases class I (R) MQE20_18935 PF05726 Pirin C-terminal cupin domain MQE20_18935 PF02678 Pirin MQE20_18945 PF03551 Transcriptional regulator PadR-like family MQE20_18950 PF13427 Domain of unknown function (DUF4111) MQE20_18950 PF01909 Nucleotidyltransferase domain MQE20_18955 PF00117 Glutamine amidotransferase class-I MQE20_18955 PF00958 GMP synthase C terminal domain MQE20_18955 PF02540 NAD synthase MQE20_18960 PF04286 Protein of unknown function (DUF445) MQE20_18965 PF07681 DoxX MQE20_18970 PF09335 SNARE associated Golgi protein MQE20_18985 PF13614 AAA domain MQE20_18995 PF01722 BolA-like protein MQE20_19010 PF01648 4'-phosphopantetheinyl transferase superfamily MQE20_19015 PF12697 Alpha/beta hydrolase family MQE20_19035 PF16197 Ketoacyl-synthetase C-terminal extension MQE20_19035 PF08242 Methyltransferase domain MQE20_19035 PF00550 Phosphopantetheine attachment site MQE20_19035 PF14765 Polyketide synthase dehydratase MQE20_19035 PF00975 Thioesterase domain MQE20_19035 PF00109 Beta-ketoacyl synthase, N-terminal domain MQE20_19035 PF02801 Beta-ketoacyl synthase, C-terminal domain MQE20_19040 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_19040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_19040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_19045 PF00501 AMP-binding enzyme MQE20_19050 PF03472 Autoinducer binding domain MQE20_19050 PF00196 Bacterial regulatory proteins, luxR family MQE20_19060 PF00765 Autoinducer synthase MQE20_19065 PF07690 Major Facilitator Superfamily MQE20_19065 PF00083 Sugar (and other) transporter MQE20_19070 PF00378 Enoyl-CoA hydratase/isomerase MQE20_19075 PF00378 Enoyl-CoA hydratase/isomerase MQE20_19080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MQE20_19080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MQE20_19080 PF02770 Acyl-CoA dehydrogenase, middle domain MQE20_19085 PF13193 AMP-binding enzyme C-terminal domain MQE20_19085 PF00501 AMP-binding enzyme MQE20_19090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MQE20_19090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MQE20_19095 PF00171 Aldehyde dehydrogenase family MQE20_19105 PF00324 Amino acid permease MQE20_19110 PF00324 Amino acid permease MQE20_19115 PF01042 Endoribonuclease L-PSP MQE20_19120 PF00842 Alanine racemase, C-terminal domain MQE20_19120 PF01168 Alanine racemase, N-terminal domain MQE20_19125 PF01266 FAD dependent oxidoreductase MQE20_19130 PF01037 Lrp/AsnC ligand binding domain MQE20_19140 PF07715 TonB-dependent Receptor Plug Domain MQE20_19140 PF00593 TonB dependent receptor MQE20_19155 PF00849 RNA pseudouridylate synthase MQE20_19170 PF00440 Bacterial regulatory proteins, tetR family MQE20_19170 PF08361 MAATS-type transcriptional repressor, C-terminal region MQE20_19180 PF00109 Beta-ketoacyl synthase, N-terminal domain MQE20_19180 PF02801 Beta-ketoacyl synthase, C-terminal domain MQE20_19215 PF00694 Aconitase C-terminal domain MQE20_19215 PF00330 Aconitase family (aconitate hydratase) MQE20_19220 PF00285 Citrate synthase, C-terminal domain MQE20_19230 PF00392 Bacterial regulatory proteins, gntR family MQE20_19230 PF07729 FCD domain MQE20_19240 PF00155 Aminotransferase class I and II MQE20_19245 PF09330 D-lactate dehydrogenase, membrane binding MQE20_19245 PF01565 FAD binding domain MQE20_19250 PF01070 FMN-dependent dehydrogenase MQE20_19255 PF00392 Bacterial regulatory proteins, gntR family MQE20_19255 PF07729 FCD domain MQE20_19260 PF02652 L-lactate permease MQE20_19265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MQE20_19265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MQE20_19265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MQE20_19265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MQE20_19270 PF16363 GDP-mannose 4,6 dehydratase MQE20_19275 PF00342 Phosphoglucose isomerase MQE20_19280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MQE20_19280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MQE20_19280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MQE20_19285 PF00483 Nucleotidyl transferase MQE20_19290 PF02397 Bacterial sugar transferase MQE20_19295 PF00535 Glycosyl transferase family 2 MQE20_19325 PF03102 NeuB family MQE20_19325 PF08666 SAF domain MQE20_19340 PF02348 Cytidylyltransferase MQE20_19345 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MQE20_19350 PF02719 Polysaccharide biosynthesis protein MQE20_19355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MQE20_19355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MQE20_19355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MQE20_19360 PF02563 Polysaccharide biosynthesis/export protein MQE20_19360 PF18412 Outer-membrane lipoprotein Wza C-terminal domain MQE20_19360 PF10531 SLBB domain MQE20_19365 PF01451 Low molecular weight phosphotyrosine protein phosphatase MQE20_19370 PF02706 Chain length determinant protein MQE20_19370 PF13807 G-rich domain on putative tyrosine kinase MQE20_19370 PF13614 AAA domain MQE20_19375 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MQE20_19375 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MQE20_19380 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MQE20_19380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MQE20_19385 PF03023 Lipid II flippase MurJ MQE20_19390 PF01510 N-acetylmuramoyl-L-alanine amidase MQE20_19395 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MQE20_19395 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MQE20_19405 PF04185 Phosphoesterase family MQE20_19405 PF05506 Domain of unknown function (DUF756) MQE20_19415 PF03725 3' exoribonuclease family, domain 2 MQE20_19415 PF01138 3' exoribonuclease family, domain 1 MQE20_19420 PF00487 Fatty acid desaturase MQE20_19425 PF00175 Oxidoreductase NAD-binding domain MQE20_19430 PF00440 Bacterial regulatory proteins, tetR family MQE20_19435 PF00440 Bacterial regulatory proteins, tetR family MQE20_19435 PF08360 QacR-like protein, C-terminal region MQE20_19440 PF01323 DSBA-like thioredoxin domain MQE20_19450 PF13419 Haloacid dehalogenase-like hydrolase MQE20_19455 PF00106 short chain dehydrogenase MQE20_19470 PF00696 Amino acid kinase family MQE20_19470 PF00583 Acetyltransferase (GNAT) family MQE20_19475 PF09084 NMT1/THI5 like MQE20_19480 PF09084 NMT1/THI5 like MQE20_19485 PF00296 Luciferase-like monooxygenase MQE20_19490 PF00528 Binding-protein-dependent transport system inner membrane component MQE20_19495 PF00005 ABC transporter MQE20_19500 PF00440 Bacterial regulatory proteins, tetR family MQE20_19500 PF08362 YcdC-like protein, C-terminal region MQE20_19505 PF01048 Phosphorylase superfamily MQE20_19515 PF01687 Riboflavin kinase MQE20_19515 PF06574 FAD synthetase MQE20_19520 PF08264 Anticodon-binding domain of tRNA MQE20_19520 PF00133 tRNA synthetases class I (I, L, M and V) MQE20_19520 PF06827 Zinc finger found in FPG and IleRS MQE20_19525 PF01252 Signal peptidase (SPase) II MQE20_19530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MQE20_19570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MQE20_19575 PF07859 alpha/beta hydrolase fold MQE20_19595 PF03466 LysR substrate binding domain MQE20_19595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE20_19600 PF01025 GrpE MQE20_19605 PF00012 Hsp70 protein MQE20_19625 PF13406 Transglycosylase SLT domain MQE20_19630 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MQE20_19630 PF02222 ATP-grasp domain MQE20_19635 PF00731 AIR carboxylase MQE20_19645 PF08245 Mur ligase middle domain MQE20_19645 PF02875 Mur ligase family, glutamate ligase domain MQE20_19645 PF01225 Mur ligase family, catalytic domain MQE20_19655 PF01569 PAP2 superfamily MQE20_19660 PF03741 Integral membrane protein TerC family MQE20_19670 PF03738 Glutathionylspermidine synthase preATP-grasp MQE20_19675 PF00355 Rieske [2Fe-2S] domain MQE20_19680 PF01979 Amidohydrolase family MQE20_19685 PF00156 Phosphoribosyl transferase domain MQE20_19695 PF13098 Thioredoxin-like domain MQE20_19695 PF10411 Disulfide bond isomerase protein N-terminus MQE20_19700 PF16916 Dimerisation domain of Zinc Transporter MQE20_19700 PF01545 Cation efflux family MQE20_19705 PF02583 Metal-sensitive transcriptional repressor MQE20_19710 PF10396 GTP-binding protein TrmE N-terminus MQE20_19710 PF12631 MnmE helical domain MQE20_19710 PF01926 50S ribosome-binding GTPase MQE20_19715 PF14849 YidC periplasmic domain MQE20_19715 PF02096 60Kd inner membrane protein MQE20_19720 PF01809 Putative membrane protein insertion efficiency factor MQE20_19725 PF00825 Ribonuclease P MQE20_19730 PF00468 Ribosomal protein L34 MQE20_19755 PF01807 CHC2 zinc finger MQE20_19755 PF08275 DNA primase catalytic core, N-terminal domain MQE20_19755 PF10410 DnaB-helicase binding domain of primase MQE20_19785 PF00625 Guanylate kinase MQE20_19800 PF07015 VirC1 protein MQE20_19810 PF00589 Phage integrase family MQE20_19810 PF02899 Phage integrase, N-terminal SAM-like domain MQE20_19845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MQE20_19845 PF14579 Helix-hairpin-helix motif MQE20_19845 PF02811 PHP domain MQE20_19845 PF07733 Bacterial DNA polymerase III alpha NTPase domain MQE20_19855 PF07733 Bacterial DNA polymerase III alpha NTPase domain MQE20_19855 PF02811 PHP domain MQE20_19855 PF14579 Helix-hairpin-helix motif MQE20_19855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MQE20_19870 PF01612 3'-5' exonuclease MQE20_19870 PF00476 DNA polymerase family A MQE20_19870 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MQE20_19870 PF01367 5'-3' exonuclease, C-terminal SAM fold MQE20_19875 PF00154 recA bacterial DNA recombination protein MQE20_19875 PF03161 LAGLIDADG DNA endonuclease family MQE20_19900 PF02463 RecF/RecN/SMC N terminal domain MQE20_19900 PF06470 SMC proteins Flexible Hinge Domain MQE20_19920 PF02867 Ribonucleotide reductase, barrel domain MQE20_19920 PF00317 Ribonucleotide reductase, all-alpha domain MQE20_19920 PF03477 ATP cone domain MQE20_19925 PF00268 Ribonucleotide reductase, small chain MQE20_19965 PF00929 Exonuclease MQE20_20000 PF13737 Transposase DDE domain MQE20_20010 PF00440 Bacterial regulatory proteins, tetR family MQE20_20010 PF16925 Tetracyclin repressor-like, C-terminal domain MQE20_20020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE20_20030 PF00465 Iron-containing alcohol dehydrogenase MQE20_20045 PF00756 Putative esterase MQE20_20050 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_20050 PF00107 Zinc-binding dehydrogenase MQE20_20055 PF02583 Metal-sensitive transcriptional repressor MQE20_20070 PF00107 Zinc-binding dehydrogenase MQE20_20070 PF08240 Alcohol dehydrogenase GroES-like domain MQE20_20070 PF13823 Alcohol dehydrogenase GroES-associated MQE20_20135 PF04650 YSIRK type signal peptide MQE20_20135 PF02216 B domain MQE20_20135 PF00746 LPXTG cell wall anchor motif MQE20_20135 PF01476 LysM domain MQE20_20135 PF03373 Octapeptide repeat MQE20_20150 PF17757 UvrB interaction domain MQE20_20150 PF03461 TRCF domain MQE20_20150 PF00270 DEAD/DEAH box helicase MQE20_20150 PF02559 CarD-like/TRCF domain MQE20_20150 PF00271 Helicase conserved C-terminal domain MQE20_20170 PF00005 ABC transporter MQE20_20170 PF09383 NIL domain MQE20_20330 PF13614 AAA domain MQE20_20335 PF17762 HTH domain found in ParB protein MQE20_20335 PF02195 ParB-like nuclease domain MQE20_20350 PF05816 Toxic anion resistance protein (TelA) MQE20_20475 PF08751 TrwC relaxase MQE20_20475 PF18340 DNA relaxase TraI 2B/2B-like domain MQE20_20475 PF07057 DNA helicase TraI MQE20_20475 PF18272 single-stranded DNA binding TraI N-terminal subdomain MQE20_20485 PF00872 Transposase, Mutator family MQE20_20520 PF00239 Resolvase, N terminal domain MQE20_20520 PF02796 Helix-turn-helix domain of resolvase MQE20_20535 PF01464 Transglycosylase SLT domain MQE20_20570 PF13098 Thioredoxin-like domain MQE20_20570 PF10411 Disulfide bond isomerase protein N-terminus MQE20_20605 PF06834 TraU protein MQE20_20615 PF06986 Type-1V conjugative transfer system mating pair stabilisation MQE20_20630 PF06122 Conjugative relaxosome accessory transposon protein MQE20_20650 PF00817 impB/mucB/samB family MQE20_20650 PF13438 Domain of unknown function (DUF4113) MQE20_20650 PF11799 impB/mucB/samB family C-terminal domain MQE20_20720 PF00565 Staphylococcal nuclease homologue MQE20_20725 PF00816 H-NS histone family