locus-tag	class	description
FED54_00030	COG1686	Belongs to the peptidase S11 family
FED54_00035	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
FED54_00070	COG0616	signal peptide processing
FED54_00075	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FED54_00085	COG0573	inorganic phosphate transmembrane transporter activity
FED54_00090	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FED54_00095	COG1113	amino acid transport
FED54_00100	COG3961	Belongs to the TPP enzyme family
FED54_00105	COG1522	sequence-specific DNA binding
FED54_00115	COG0076	glutamate decarboxylase activity
FED54_00120	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FED54_00130	COG1309	transcriptional regulator
FED54_00145	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FED54_00180	COG0352	thiamine-phosphate diphosphorylase activity
FED54_00205	COG1203	CRISPR-associated helicase, Cas3
FED54_00235	COG0612	Peptidase, M16
FED54_00250	COG0583	DNA-binding transcription factor activity
FED54_00255	COG0477	Major facilitator Superfamily
FED54_00280	COG1187	pseudouridine synthase activity
FED54_00295	COG1686	Belongs to the peptidase S11 family
FED54_00300	COG1252	NADH dehydrogenase
FED54_00310	COG0415	Belongs to the DNA photolyase family
FED54_00325	COG1215	transferase activity, transferring glycosyl groups
FED54_00410	COG0556	nucleotide-excision repair
FED54_00460	COG4221	oxidoreductase activity
FED54_00470	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FED54_00475	COG1381	Involved in DNA repair and RecF pathway recombination
FED54_00485	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FED54_00500	COG0681	Belongs to the peptidase S26 family
FED54_00515	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FED54_00535	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FED54_00540	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FED54_00545	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
FED54_00555	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
FED54_00560	COG4208	sulfate ABC transporter
FED54_00565	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FED54_00570	COG0583	DNA-binding transcription factor activity
FED54_00575	COG4625	pathogenesis
FED54_00590	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
FED54_00605	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FED54_00615	COG1051	belongs to the nudix hydrolase family
FED54_00615	COG1056	cytidyltransferase-related domain
FED54_00620	COG1024	Enoyl-CoA hydratase
FED54_00625	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FED54_00630	COG2814	Major facilitator Superfamily
FED54_00635	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FED54_00635	COG0047	phosphoribosylformylglycinamidine synthase activity
FED54_00655	COG1473	amidohydrolase
FED54_00660	COG0824	Thioesterase
FED54_00680	COG0823	Involved in the tonB-independent uptake of proteins
FED54_00700	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FED54_00735	COG0628	permease
FED54_00745	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FED54_00750	COG0596	Alpha beta hydrolase
FED54_00755	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
FED54_00755	COG0616	signal peptide processing
FED54_00765	COG2333	competence protein COMEC
FED54_00765	COG0658	competence protein
FED54_00770	COG1136	(ABC) transporter
FED54_00775	COG4591	ABC-type transport system involved in lipoprotein release permease component
FED54_00805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FED54_00825	COG0463	Glycosyl transferase, family 2
FED54_00870	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
FED54_00875	COG1280	lysine exporter protein (LysE YggA)
FED54_00885	COG0019	diaminopimelate decarboxylase activity
FED54_00895	COG1113	amino acid transport
FED54_00910	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
FED54_00920	COG3339	Conserved Protein
FED54_00925	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FED54_00930	COG0243	molybdopterin cofactor binding
FED54_00935	COG1929	Belongs to the glycerate kinase type-1 family
FED54_00950	COG0778	Nitroreductase
FED54_00985	COG3811	Belongs to the UPF0386 family
FED54_01010	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FED54_01035	COG0741	lytic transglycosylase activity
FED54_01055	COG0584	glycerophosphoryl diester phosphodiesterase
FED54_01080	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FED54_01100	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
FED54_01105	COG0477	Major facilitator Superfamily
FED54_01155	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
FED54_01160	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FED54_01185	COG0505	Belongs to the CarA family
FED54_01205	COG0589	response to stress
FED54_01220	COG2843	Capsule synthesis protein
FED54_01240	COG2321	neutral zinc metallopeptidase
FED54_01245	COG2354	Protein conserved in bacteria
FED54_01265	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FED54_01290	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FED54_01295	COG1053	succinate dehydrogenase
FED54_01300	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
FED54_01305	COG2009	succinate dehydrogenase
FED54_01340	COG2921	Belongs to the UPF0250 family
FED54_01345	COG0321	lipoyl(octanoyl) transferase activity
FED54_01360	COG0531	amino acid
FED54_01370	COG1733	regulation of RNA biosynthetic process
FED54_01375	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FED54_01380	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FED54_01380	COG1648	precorrin-2 dehydrogenase activity
FED54_01395	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
FED54_01425	COG0671	phosphoesterase, PA-phosphatase related
FED54_01430	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FED54_01440	COG1538	Outer membrane efflux protein
FED54_01445	COG0393	Putative heavy-metal-binding
FED54_01450	COG0393	Putative heavy-metal-binding
FED54_01460	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_01470	COG0525	valine-tRNA ligase activity
FED54_01490	COG0583	DNA-binding transcription factor activity
FED54_01500	COG0004	ammonium transporteR
FED54_01510	COG0642	Histidine kinase
FED54_01515	COG0745	RESPONSE REGULATOR receiver
FED54_01520	COG2194	sulfuric ester hydrolase activity
FED54_01540	COG1752	Esterase of the alpha-beta hydrolase superfamily
FED54_01555	COG2315	Protein conserved in bacteria
FED54_01560	COG0142	geranyltranstransferase activity
FED54_01565	COG2828	Protein conserved in bacteria
FED54_01570	COG1113	amino acid transport
FED54_01590	COG2207	Transcriptional regulator
FED54_01615	COG2249	NAD(P)H dehydrogenase (quinone) activity
FED54_01635	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FED54_01645	COG1530	ribonuclease E activity
FED54_01650	COG0424	maF-like protein
FED54_01655	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
FED54_01660	COG1792	Involved in formation and maintenance of cell shape
FED54_01665	COG1077	Cell shape determining protein MreB Mrl
FED54_01670	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FED54_01680	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FED54_01705	COG3590	peptidase
FED54_01710	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
FED54_01715	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FED54_01720	COG1752	Esterase of the alpha-beta hydrolase superfamily
FED54_01725	COG1115	amino acid carrier protein
FED54_01745	COG2814	Major facilitator Superfamily
FED54_01750	COG1289	transmembrane transporter activity
FED54_01800	COG1376	ErfK ybiS ycfS ynhG family protein
FED54_01805	COG2832	Protein of unknown function (DUF454)
FED54_01815	COG5510	response to toxic substance
FED54_01875	COG3422	double-strand break repair
FED54_01880	COG2824	Alkylphosphonate utilization operon protein PhnA
FED54_01895	COG0354	folic acid binding
FED54_01900	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FED54_01910	COG0679	Auxin Efflux Carrier
FED54_01915	COG1902	pentaerythritol trinitrate reductase activity
FED54_01920	COG4772	TonB-dependent receptor
FED54_01925	COG2094	Belongs to the DNA glycosylase MPG family
FED54_01955	COG2233	PERMEase
FED54_01965	COG0833	amino acid
FED54_01970	COG1690	Belongs to the RtcB family
FED54_01975	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FED54_01975	COG2885	chlorophyll binding
FED54_01985	COG0183	Belongs to the thiolase family
FED54_02005	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FED54_02025	COG2207	Transcriptional regulator
FED54_02030	COG0183	Belongs to the thiolase family
FED54_02060	COG1272	protein, Hemolysin III
FED54_02065	COG0477	Major facilitator Superfamily
FED54_02080	COG0450	alkyl hydroperoxide reductase
FED54_02100	COG0285	dihydrofolate synthase activity
FED54_02135	COG0133	tryptophan synthase activity
FED54_02150	COG2096	Adenosyltransferase
FED54_02155	COG0584	glycerophosphoryl diester phosphodiesterase
FED54_02170	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
FED54_02175	COG0745	RESPONSE REGULATOR receiver
FED54_02180	COG2205	protein histidine kinase activity
FED54_02190	COG1960	acyl-CoA dehydrogenase activity
FED54_02195	COG1960	acyl-CoA dehydrogenase activity
FED54_02250	COG1442	glycosyl transferase family 8
FED54_02265	COG0438	transferase activity, transferring glycosyl groups
FED54_02275	COG0438	transferase activity, transferring glycosyl groups
FED54_02280	COG0726	polysaccharide deacetylase
FED54_02295	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
FED54_02300	COG2205	protein histidine kinase activity
FED54_02330	COG1862	Preprotein translocase
FED54_02340	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FED54_02345	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FED54_02355	COG3781	membrane
FED54_02360	COG0613	PHP domain protein
FED54_02370	COG2350	Protein conserved in bacteria
FED54_02400	COG1607	acyl-coa hydrolase
FED54_02415	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FED54_02415	COG3453	Protein conserved in bacteria
FED54_02460	COG2199	diguanylate cyclase activity
FED54_02470	COG1408	metallophosphoesterase
FED54_02475	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FED54_02485	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FED54_02505	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FED54_02510	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
FED54_02515	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FED54_02525	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
FED54_02535	COG2969	positive regulation of protein catabolic process
FED54_02555	COG1960	acyl-CoA dehydrogenase activity
FED54_02560	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FED54_02575	COG1309	transcriptional regulator
FED54_02625	COG1183	phosphatidylcholine synthase activity
FED54_02630	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FED54_02660	COG1196	nuclear chromosome segregation
FED54_02660	COG0739	heme binding
FED54_02660	COG0741	lytic transglycosylase activity
FED54_02670	COG1702	phosphate starvation-inducible protein PhoH
FED54_02705	COG1295	ribonuclease BN
FED54_02710	COG0697	spore germination
FED54_02715	COG2169	Transcriptional regulator
FED54_02720	COG0179	Fumarylacetoacetate (FAA) hydrolase
FED54_02765	COG0557	exoribonuclease II activity
FED54_02770	COG0339	signal peptide processing
FED54_02775	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
FED54_02805	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
FED54_02810	COG1960	acyl-CoA dehydrogenase activity
FED54_02835	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FED54_02845	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FED54_02965	COG0626	cystathionine gamma-synthase activity
FED54_02970	COG0433	COG0433 Predicted ATPase
FED54_02980	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FED54_02980	COG1017	nitric oxide dioxygenase activity
FED54_02985	COG1959	2 iron, 2 sulfur cluster binding
FED54_03000	COG1301	dicarboxylic acid transport
FED54_03005	COG1946	Acyl-CoA thioesterase
FED54_03025	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FED54_03030	COG1040	competence protein
FED54_03035	COG0494	nUDIX hydrolase
FED54_03045	COG0598	Magnesium transport protein CorA
FED54_03055	COG2854	intermembrane phospholipid transfer
FED54_03065	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FED54_03070	COG1127	ABC transporter
FED54_03075	COG0513	Belongs to the DEAD box helicase family
FED54_03095	COG0408	coproporphyrinogen oxidase activity
FED54_03110	COG1960	acyl-CoA dehydrogenase activity
FED54_03120	COG1983	PspC domain protein
FED54_03125	COG0517	IMP dehydrogenase activity
FED54_03160	COG1106	Psort location Cytoplasmic, score
FED54_03180	COG0583	DNA-binding transcription factor activity
FED54_03220	COG1012	belongs to the aldehyde dehydrogenase family
FED54_03230	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FED54_03235	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FED54_03240	COG0833	amino acid
FED54_03270	COG1192	Involved in chromosome partitioning
FED54_03285	COG1289	transmembrane transporter activity
FED54_03300	COG2249	NAD(P)H dehydrogenase (quinone) activity
FED54_03305	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
FED54_03315	COG0277	FAD linked oxidase domain protein
FED54_03320	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FED54_03345	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
FED54_03370	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
FED54_03420	COG0194	GDP metabolic process
FED54_03435	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FED54_03455	COG3307	-O-antigen
FED54_03470	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
FED54_03475	COG1704	LemA family
FED54_03485	COG0493	'glutamate synthase
FED54_03490	COG0070	glutamate synthase
FED54_03490	COG0069	glutamate synthase activity
FED54_03490	COG0067	glutamate synthase
FED54_03540	COG2226	methyltransferase
FED54_03555	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FED54_03560	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FED54_03605	COG0833	amino acid
FED54_03690	COG0488	(ABC) transporter
FED54_03700	COG4221	oxidoreductase activity
FED54_03705	COG0659	secondary active sulfate transmembrane transporter activity
FED54_03715	COG0745	RESPONSE REGULATOR receiver
FED54_03730	COG0427	acetyl-CoA hydrolase
FED54_03760	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FED54_03795	COG2329	Antibiotic biosynthesis monooxygenase
FED54_03810	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FED54_03890	COG2249	NAD(P)H dehydrogenase (quinone) activity
FED54_03900	COG1733	regulation of RNA biosynthetic process
FED54_03930	COG1733	regulation of RNA biosynthetic process
FED54_03960	COG0667	Aldo Keto reductase
FED54_03980	COG0583	DNA-binding transcription factor activity
FED54_03985	COG2814	Major facilitator Superfamily
FED54_04015	COG1335	isochorismatase
FED54_04025	COG1012	belongs to the aldehyde dehydrogenase family
FED54_04030	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FED54_04040	COG1113	amino acid transport
FED54_04050	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FED54_04065	COG2814	Major facilitator Superfamily
FED54_04075	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FED54_04075	COG0352	thiamine-phosphate diphosphorylase activity
FED54_04075	COG0351	phosphomethylpyrimidine kinase
FED54_04095	COG1309	transcriptional regulator
FED54_04105	COG3706	GGDEF domain
FED54_04115	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FED54_04125	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FED54_04130	COG3162	membrane
FED54_04135	COG2198	Histidine kinase
FED54_04135	COG0784	Response regulator, receiver
FED54_04135	COG2205	protein histidine kinase activity
FED54_04160	COG1522	sequence-specific DNA binding
FED54_04165	COG1335	isochorismatase
FED54_04170	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FED54_04180	COG0668	transmembrane transport
FED54_04185	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FED54_04190	COG1519	Transferase
FED54_04195	COG1902	pentaerythritol trinitrate reductase activity
FED54_04220	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FED54_04245	COG0426	domain, Protein
FED54_04245	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FED54_04250	COG4774	siderophore transport
FED54_04255	COG2119	membrane
FED54_04265	COG0508	dehydrogenase complex catalyzes the overall conversion of
FED54_04275	COG4942	peptidase
FED54_04290	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FED54_04300	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FED54_04320	COG0189	ligase activity
FED54_04350	COG0708	Exodeoxyribonuclease III
FED54_04355	COG1393	Belongs to the ArsC family
FED54_04370	COG3706	GGDEF domain
FED54_04405	COG2351	hydroxyisourate hydrolase activity
FED54_04410	COG2233	PERMEase
FED54_04420	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FED54_04430	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
FED54_04435	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_04445	COG3150	esterase
FED54_04495	COG3409	Peptidoglycan-binding domain 1 protein
FED54_04495	COG5632	N-Acetylmuramoyl-L-alanine amidase
FED54_04495	COG1388	LysM domain
FED54_04500	COG3501	Rhs element vgr protein
FED54_04510	COG2918	glutathione biosynthetic process
FED54_04525	COG2733	membrane
FED54_04530	COG0436	Aminotransferase
FED54_04535	COG0534	Mate efflux family protein
FED54_04625	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
FED54_04630	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FED54_04640	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
FED54_04685	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FED54_04740	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
FED54_04745	COG0546	phosphoglycolate phosphatase activity
FED54_04755	COG0010	Belongs to the arginase family
FED54_04795	COG0523	cobalamin synthesis protein
FED54_04805	COG1113	amino acid transport
FED54_04815	COG0625	glutathione transferase activity
FED54_04835	COG1683	Conserved Protein
FED54_04840	COG0534	Mate efflux family protein
FED54_04845	COG0385	Bile acid
FED54_04850	COG1335	isochorismatase
FED54_04855	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FED54_04875	COG2116	formate transmembrane transporter activity
FED54_04880	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FED54_04885	COG2133	pyrroloquinoline quinone binding
FED54_04890	COG2983	Belongs to the UPF0260 family
FED54_04910	COG1194	a g-specific adenine glycosylase
FED54_04925	COG2818	Glycosylase
FED54_04930	COG1064	alcohol dehydrogenase
FED54_04935	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FED54_04950	COG0583	DNA-binding transcription factor activity
FED54_04955	COG0656	L-ascorbic acid biosynthetic process
FED54_04960	COG2814	Major facilitator Superfamily
FED54_04995	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FED54_05010	COG2233	PERMEase
FED54_05015	COG0583	DNA-binding transcription factor activity
FED54_05050	COG0733	neurotransmitter:sodium symporter activity
FED54_05090	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FED54_05095	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
FED54_05100	COG0596	Alpha beta hydrolase
FED54_05125	COG0488	(ABC) transporter
FED54_05130	COG0586	Pfam SNARE associated Golgi protein
FED54_05140	COG0187	DNA topoisomerase II activity
FED54_05150	COG0592	DNA-directed DNA polymerase activity
FED54_05160	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FED54_05175	COG0706	membrane insertase activity
FED54_05190	COG1230	cation diffusion facilitator family transporter
FED54_05195	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FED54_05210	COG0402	S-adenosylhomocysteine deaminase activity
FED54_05220	COG0754	glutathionylspermidine amidase activity
FED54_05230	COG0861	Integral membrane protein TerC family
FED54_05235	COG0671	phosphoesterase, PA-phosphatase related
FED54_05245	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FED54_05265	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FED54_05270	COG2951	lytic endotransglycosylase activity
FED54_05325	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FED54_05365	COG1047	Peptidyl-prolyl cis-trans
FED54_05375	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
FED54_05380	COG0196	riboflavin kinase activity
FED54_05390	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FED54_05395	COG1309	transcriptional regulator
FED54_05400	COG1116	anion transmembrane transporter activity
FED54_05405	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FED54_05410	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FED54_05415	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FED54_05420	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FED54_05440	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_05445	COG0546	phosphoglycolate phosphatase activity
FED54_05500	COG3023	N-Acetylmuramoyl-L-alanine amidase
FED54_05505	COG0728	peptidoglycan biosynthetic process
FED54_05535	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FED54_05545	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FED54_05550	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FED54_05555	COG2089	acid synthase
FED54_05565	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FED54_05570	COG1083	cytidylyl-transferase
FED54_05575	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_05585	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_05620	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FED54_05635	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FED54_05650	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FED54_05665	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FED54_05670	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FED54_05680	COG2186	Transcriptional regulator
FED54_05690	COG0277	FAD linked oxidase domain protein
FED54_05695	COG1448	Aminotransferase
FED54_05700	COG1802	Transcriptional regulator
FED54_05715	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FED54_05810	COG0564	pseudouridine synthase activity
FED54_05835	COG1522	sequence-specific DNA binding
FED54_05850	COG0251	oxidation-reduction process
FED54_05855	COG1113	amino acid transport
FED54_05860	COG1113	amino acid transport
FED54_05880	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FED54_05885	COG1960	acyl-CoA dehydrogenase activity
FED54_05890	COG1024	Enoyl-CoA hydratase
FED54_05895	COG1024	Enoyl-CoA hydratase
FED54_05900	COG0477	Major facilitator Superfamily
FED54_05905	COG3916	Acyl-homoserine-lactone synthase
FED54_05915	COG2197	response regulator
FED54_05925	COG1960	acyl-CoA dehydrogenase activity
FED54_05930	COG3321	synthase
FED54_05930	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FED54_05930	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FED54_05930	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
FED54_05970	COG0271	Belongs to the BolA IbaG family
FED54_05980	COG1192	Involved in chromosome partitioning
FED54_05995	COG0586	Pfam SNARE associated Golgi protein
FED54_06000	COG2259	Doxx family
FED54_06005	COG4399	Belongs to the UPF0754 family
FED54_06010	COG0519	Catalyzes the synthesis of GMP from XMP
FED54_06010	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FED54_06055	COG0281	malic enzyme
FED54_06060	COG2837	iron assimilation
FED54_06065	COG1280	lysine exporter protein (LysE YggA)
FED54_06070	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FED54_06075	COG1121	(ABC) transporter
FED54_06140	COG0386	Belongs to the glutathione peroxidase family
FED54_06155	COG1309	transcriptional regulator
FED54_06160	COG0697	spore germination
FED54_06170	COG0758	DNA mediated transformation
FED54_06205	COG1309	transcriptional regulator
FED54_06240	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FED54_06250	COG0655	NAD(P)H dehydrogenase (quinone) activity
FED54_06290	COG4452	Inner membrane protein CreD
FED54_06295	COG2205	protein histidine kinase activity
FED54_06300	COG0745	RESPONSE REGULATOR receiver
FED54_06305	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FED54_06315	COG0477	Major facilitator Superfamily
FED54_06325	COG1253	flavin adenine dinucleotide binding
FED54_06330	COG3012	SEC-C Motif Domain Protein
FED54_06335	COG2860	membrane
FED54_06340	COG0477	Major facilitator Superfamily
FED54_06350	COG0318	PFAM AMP-dependent synthetase and ligase
FED54_06365	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
FED54_06380	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FED54_06390	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FED54_06395	COG0606	chelatase, subunit chli
FED54_06455	COG1061	Type III restriction enzyme res subunit
FED54_06480	COG0606	chelatase, subunit chli
FED54_06490	COG0347	Belongs to the P(II) protein family
FED54_06495	COG0004	ammonium transporteR
FED54_06505	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FED54_06505	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FED54_06545	COG0795	lipopolysaccharide-transporting ATPase activity
FED54_06550	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
FED54_06555	COG0793	Belongs to the peptidase S41A family
FED54_06570	COG2197	response regulator
FED54_06580	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FED54_06590	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FED54_06595	COG4974	Belongs to the 'phage' integrase family
FED54_06620	COG0772	Belongs to the SEDS family
FED54_06625	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FED54_06630	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FED54_06635	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FED54_06660	COG0697	spore germination
FED54_06665	COG1538	Outer membrane efflux protein
FED54_06685	COG3275	phosphorelay sensor kinase activity
FED54_06695	COG0181	hydroxymethylbilane synthase activity
FED54_06740	COG1716	ATPase activity
FED54_06745	COG0546	phosphoglycolate phosphatase activity
FED54_06845	COG2056	Na+-H+ antiporter family
FED54_06860	COG0326	Molecular chaperone. Has ATPase activity
FED54_06875	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
FED54_06940	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FED54_06945	COG2169	Transcriptional regulator
FED54_06945	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FED54_06975	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
FED54_06985	COG0497	DNA recombination
FED54_07000	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FED54_07010	COG0237	dephospho-CoA kinase activity
FED54_07060	COG0195	Participates in both transcription termination and antitermination
FED54_07080	COG2212	antiporter activity
FED54_07090	COG0651	ATP synthesis coupled electron transport
FED54_07095	COG1006	Multisubunit Na H antiporter MnhC subunit
FED54_07100	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FED54_07100	COG2111	Na H antiporter
FED54_07115	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
FED54_07130	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FED54_07145	COG2226	methyltransferase
FED54_07165	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
FED54_07170	COG1074	ATP-dependent DNA helicase activity
FED54_07175	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FED54_07195	COG0598	Magnesium transport protein CorA
FED54_07200	COG0789	Transcriptional regulator
FED54_07205	COG0484	heat shock protein binding
FED54_07220	COG0475	glutathione-regulated potassium exporter activity
FED54_07220	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FED54_07225	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FED54_07245	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FED54_07255	COG4535	Mg2 and Co2 transporter CorC
FED54_07260	COG0425	Belongs to the sulfur carrier protein TusA family
FED54_07270	COG0644	oxidoreductase
FED54_07270	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
FED54_07280	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
FED54_07295	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FED54_07300	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
FED54_07340	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FED54_07355	COG0534	Mate efflux family protein
FED54_07365	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FED54_07370	COG4221	oxidoreductase activity
FED54_07375	COG0583	DNA-binding transcription factor activity
FED54_07395	COG1530	ribonuclease E activity
FED54_07410	COG0546	phosphoglycolate phosphatase activity
FED54_07415	COG2378	regulation of single-species biofilm formation
FED54_07420	COG0625	glutathione transferase activity
FED54_07430	COG0583	DNA-binding transcription factor activity
FED54_07485	COG0473	3-isopropylmalate dehydrogenase activity
FED54_07550	COG1061	Type III restriction enzyme res subunit
FED54_07575	COG1301	dicarboxylic acid transport
FED54_07585	COG1560	Kdo2-lipid A biosynthetic process
FED54_07590	COG1280	lysine exporter protein (LysE YggA)
FED54_07615	COG1733	regulation of RNA biosynthetic process
FED54_07640	COG0210	DNA helicase
FED54_07645	COG0724	RNA recognition motif
FED54_07665	COG4651	solute:proton antiporter activity
FED54_07665	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FED54_07670	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FED54_07675	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FED54_07690	COG0788	formyltetrahydrofolate deformylase activity
FED54_07795	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FED54_07795	COG2813	Specifically methylates the guanine in position
FED54_07805	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FED54_07815	COG4774	siderophore transport
FED54_07865	COG0776	regulation of translation
FED54_07890	COG3267	Type II secretory pathway component ExeA
FED54_07890	COG3409	Peptidoglycan-binding domain 1 protein
FED54_07915	COG0681	Belongs to the peptidase S26 family
FED54_07950	COG4373	Mu-like prophage FluMu protein gp28
FED54_07965	COG4383	Mu-like prophage protein gp29
FED54_07970	COG2369	cell adhesion
FED54_07975	COG5005	Phage virion morphogenesis
FED54_07990	COG4397	Mu-like prophage major head subunit gpT
FED54_08090	COG0740	serine-type endopeptidase activity
FED54_08110	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
FED54_08110	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
FED54_08115	COG0857	belongs to the CobB CobQ family
FED54_08115	COG0280	phosphate acetyltransferase
FED54_08120	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FED54_08130	COG0800	Aldolase
FED54_08140	COG3265	gluconokinase activity
FED54_08145	COG1012	belongs to the aldehyde dehydrogenase family
FED54_08155	COG2267	carboxylic ester hydrolase activity
FED54_08170	COG0793	Belongs to the peptidase S41A family
FED54_08205	COG1426	Protein conserved in bacteria
FED54_08245	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FED54_08255	COG1162	GTPase activity
FED54_08260	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
FED54_08275	COG1538	Outer membrane efflux protein
FED54_08280	COG0577	efflux transmembrane transporter activity
FED54_08280	COG1136	(ABC) transporter
FED54_08285	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FED54_08310	COG0028	Belongs to the TPP enzyme family
FED54_08315	COG0440	acetolactate synthase activity
FED54_08350	COG3501	Rhs element vgr protein
FED54_08375	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
FED54_08390	COG0084	hydrolase, TatD family'
FED54_08405	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FED54_08415	COG0583	DNA-binding transcription factor activity
FED54_08425	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FED54_08525	COG2205	protein histidine kinase activity
FED54_08540	COG2132	Multicopper oxidase
FED54_08550	COG0789	Transcriptional regulator
FED54_08585	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FED54_08600	COG0640	Transcriptional regulator
FED54_08610	COG0798	PFAM Bile acid sodium symporter
FED54_08615	COG0431	NADPH-dependent FMN reductase
FED54_08630	COG2814	Major facilitator Superfamily
FED54_08640	COG0697	spore germination
FED54_08645	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
FED54_08650	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
FED54_08655	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
FED54_08670	COG3622	Belongs to the hyi family
FED54_08675	COG2084	Dehydrogenase
FED54_08680	COG1024	Enoyl-CoA hydratase
FED54_08685	COG2205	protein histidine kinase activity
FED54_08685	COG5002	protein histidine kinase activity
FED54_08685	COG0784	Response regulator, receiver
FED54_08705	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FED54_08715	COG3956	TIGRFAM MazG family protein
FED54_08720	COG1555	photosystem II stabilization
FED54_08725	COG0617	tRNA 3'-terminal CCA addition
FED54_08730	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FED54_08750	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FED54_08755	COG3028	Belongs to the UPF0307 family
FED54_08790	COG0625	glutathione transferase activity
FED54_08795	COG1238	metal cluster binding
FED54_08810	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FED54_08835	COG0072	phenylalanine-tRNA ligase activity
FED54_08865	COG0248	Ppx GppA phosphatase
FED54_08875	COG0037	tRNA processing
FED54_08915	COG1764	response to oxidative stress
FED54_08920	COG1846	Transcriptional regulator
FED54_08930	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FED54_08990	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FED54_08995	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
FED54_09000	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FED54_09010	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FED54_09060	COG1214	PFAM Peptidase M22, glycoprotease
FED54_09075	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
FED54_09085	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FED54_09090	COG0561	phosphatase activity
FED54_09100	COG2132	Multicopper oxidase
FED54_09120	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FED54_09125	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
FED54_09130	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
FED54_09175	COG1063	alcohol dehydrogenase
FED54_09180	COG0583	DNA-binding transcription factor activity
FED54_09185	COG1960	acyl-CoA dehydrogenase activity
FED54_09190	COG2814	Major facilitator Superfamily
FED54_09195	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FED54_09205	COG1053	succinate dehydrogenase
FED54_09210	COG0583	DNA-binding transcription factor activity
FED54_09230	COG0583	DNA-binding transcription factor activity
FED54_09240	COG1473	amidohydrolase
FED54_09260	COG0583	DNA-binding transcription factor activity
FED54_09270	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
FED54_09275	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FED54_09285	COG1309	transcriptional regulator
FED54_09305	COG0384	phenazine biosynthesis protein PhzF
FED54_09315	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FED54_09335	COG0745	RESPONSE REGULATOR receiver
FED54_09340	COG2205	protein histidine kinase activity
FED54_09375	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
FED54_09405	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FED54_09410	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FED54_09430	COG0583	DNA-binding transcription factor activity
FED54_09450	COG0668	transmembrane transport
FED54_09460	COG2081	HI0933 family
FED54_09465	COG2515	1-aminocyclopropane-1-carboxylate deaminase
FED54_09495	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FED54_09495	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FED54_09505	COG0489	protein tyrosine kinase activity
FED54_09565	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FED54_09575	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FED54_09590	COG0730	response to heat
FED54_09600	COG1196	nuclear chromosome segregation
FED54_09620	COG2223	nitrite transmembrane transporter activity
FED54_09625	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
FED54_09630	COG1877	trehalose-phosphatase activity
FED54_09635	COG0596	Alpha beta hydrolase
FED54_09635	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FED54_09635	COG2226	methyltransferase
FED54_09650	COG4106	trans-aconitate 2-methyltransferase activity
FED54_09665	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
FED54_09670	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
FED54_09675	COG0009	L-threonylcarbamoyladenylate synthase
FED54_09680	COG3101	peptidyl-lysine hydroxylation
FED54_09685	COG1399	metal-binding, possibly nucleic acid-binding protein
FED54_09710	COG1652	LysM domain
FED54_09715	COG0352	thiamine-phosphate diphosphorylase activity
FED54_09715	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FED54_09715	COG0351	phosphomethylpyrimidine kinase
FED54_09725	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
FED54_09755	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
FED54_09785	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
FED54_09800	COG0358	DNA primase activity
FED54_09810	COG0564	pseudouridine synthase activity
FED54_09835	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FED54_09855	COG0583	DNA-binding transcription factor activity
FED54_09860	COG0473	3-isopropylmalate dehydrogenase activity
FED54_09880	COG1012	belongs to the aldehyde dehydrogenase family
FED54_09900	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FED54_09900	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
FED54_09960	COG0456	acetyltransferase
FED54_09970	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
FED54_09975	COG0492	ferredoxin-NADP+ reductase activity
FED54_09980	COG1674	ftsk spoiiie
FED54_09980	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FED54_09985	COG1280	lysine exporter protein (LysE YggA)
FED54_10005	COG2894	cell division
FED54_10020	COG0204	Acyl-transferase
FED54_10025	COG2885	chlorophyll binding
FED54_10030	COG0210	DNA helicase
FED54_10040	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FED54_10055	COG0121	glutamine amidotransferase
FED54_10080	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FED54_10085	COG0735	belongs to the Fur family
FED54_10110	COG0420	3'-5' exonuclease activity
FED54_10135	COG1090	epimerase
FED54_10150	COG2050	protein possibly involved in aromatic compounds catabolism
FED54_10160	COG2814	Major facilitator Superfamily
FED54_10165	COG0405	Gamma-glutamyltransferase
FED54_10230	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
FED54_10240	COG0477	Major facilitator Superfamily
FED54_10245	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FED54_10255	COG1595	DNA-templated transcription, initiation
FED54_10310	COG0531	amino acid
FED54_10315	COG2040	homocysteine
FED54_10340	COG1309	transcriptional regulator
FED54_10345	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FED54_10350	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FED54_10360	COG1607	acyl-coa hydrolase
FED54_10370	COG0523	cobalamin synthesis protein
FED54_10380	COG4681	YaeQ
FED54_10390	COG1649	PFAM Uncharacterised BCR, COG1649
FED54_10390	COG0726	polysaccharide deacetylase
FED54_10395	COG1215	transferase activity, transferring glycosyl groups
FED54_10405	COG1024	Enoyl-CoA hydratase
FED54_10420	COG1414	Transcriptional regulator
FED54_10440	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_10455	COG2271	Major facilitator Superfamily
FED54_10465	COG2267	carboxylic ester hydrolase activity
FED54_10470	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_10485	COG0028	Belongs to the TPP enzyme family
FED54_10495	COG0477	Major facilitator Superfamily
FED54_10500	COG0242	peptide deformylase activity
FED54_10505	COG2066	Belongs to the glutaminase family
FED54_10510	COG2207	Transcriptional regulator
FED54_10515	COG2223	nitrite transmembrane transporter activity
FED54_10535	COG0583	DNA-binding transcription factor activity
FED54_10540	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_10545	COG2271	Major facilitator Superfamily
FED54_10550	COG3959	Transketolase, thiamine diphosphate binding domain
FED54_10555	COG3958	Transketolase
FED54_10565	COG0306	phosphate transporter
FED54_10585	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FED54_10630	COG4181	ATPase activity
FED54_10635	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
FED54_10665	COG0583	DNA-binding transcription factor activity
FED54_10675	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FED54_10680	COG1773	rubredoxin
FED54_10730	COG2851	Citrate transporter
FED54_10740	COG1253	flavin adenine dinucleotide binding
FED54_10780	COG0804	urea catabolic process
FED54_10790	COG0830	nickel cation binding
FED54_10805	COG0742	ribosomal rna small subunit methyltransferase
FED54_10810	COG0768	penicillin binding
FED54_10835	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FED54_10840	COG2878	Part of a membrane complex involved in electron transport
FED54_10845	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FED54_10855	COG3384	dioxygenase
FED54_10875	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FED54_10915	COG0006	proline dipeptidase activity
FED54_10920	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FED54_10925	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FED54_10945	COG1279	arginine transmembrane transporter activity
FED54_10950	COG0583	DNA-binding transcription factor activity
FED54_10990	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FED54_10995	COG0741	lytic transglycosylase activity
FED54_10995	COG1388	LysM domain
FED54_10995	COG1388	LysM domain
FED54_10995	COG0741	lytic transglycosylase activity
FED54_11005	COG4174	ABC transporter (Permease)
FED54_11010	COG4239	(ABC) transporter, permease
FED54_11015	COG4172	Belongs to the ABC transporter superfamily
FED54_11045	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FED54_11055	COG3706	GGDEF domain
FED54_11055	COG5001	Diguanylate cyclase
FED54_11055	COG4251	negative regulation of phosphorylation
FED54_11055	COG2203	Gaf domain
FED54_11070	COG0446	pyridine nucleotide-disulphide oxidoreductase
FED54_11070	COG1902	pentaerythritol trinitrate reductase activity
FED54_11100	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FED54_11110	COG0583	DNA-binding transcription factor activity
FED54_11115	COG2814	Major facilitator Superfamily
FED54_11130	COG1012	belongs to the aldehyde dehydrogenase family
FED54_11135	COG1454	alcohol dehydrogenase
FED54_11140	COG3485	protocatechuate 3,4-dioxygenase
FED54_11155	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FED54_11160	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FED54_11165	COG0183	Belongs to the thiolase family
FED54_11200	COG1113	amino acid transport
FED54_11210	COG0531	amino acid
FED54_11230	COG1012	belongs to the aldehyde dehydrogenase family
FED54_11250	COG1113	amino acid transport
FED54_11265	COG0697	spore germination
FED54_11270	COG2721	sulfolactate sulfo-lyase activity
FED54_11275	COG2271	Major facilitator Superfamily
FED54_11280	COG4948	Mandelate Racemase Muconate Lactonizing
FED54_11290	COG1012	belongs to the aldehyde dehydrogenase family
FED54_11295	COG2186	Transcriptional regulator
FED54_11320	COG1960	acyl-CoA dehydrogenase activity
FED54_11330	COG1012	belongs to the aldehyde dehydrogenase family
FED54_11335	COG1024	Enoyl-CoA hydratase
FED54_11340	COG2814	Major facilitator Superfamily
FED54_11355	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FED54_11370	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FED54_11410	COG2207	Transcriptional regulator
FED54_11415	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
FED54_11420	COG2072	flavoprotein involved in K transport
FED54_11425	COG0300	oxidoreductase activity
FED54_11435	COG1309	transcriptional regulator
FED54_11440	COG1741	Belongs to the pirin family
FED54_11455	COG2072	flavoprotein involved in K transport
FED54_11465	COG2252	PERMEase
FED54_11470	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
FED54_11475	COG3038	cytochrome b561
FED54_11485	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FED54_11505	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FED54_11515	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
FED54_11530	COG0667	Aldo Keto reductase
FED54_11590	COG2885	chlorophyll binding
FED54_11600	COG0625	glutathione transferase activity
FED54_11605	COG0220	tRNA (guanine-N7-)-methyltransferase activity
FED54_11625	COG3634	alkyl hydroperoxide reductase activity
FED54_11635	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FED54_11645	COG0450	alkyl hydroperoxide reductase
FED54_11650	COG1643	Atp-dependent helicase
FED54_11670	COG3135	benzoate transporter
FED54_11675	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_11680	COG0633	Ferredoxin
FED54_11680	COG0543	2 iron, 2 sulfur cluster binding
FED54_11685	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
FED54_11690	COG4638	Rieske (2fe-2S)
FED54_11700	COG0583	DNA-binding transcription factor activity
FED54_11710	COG2871	sodium ion transport
FED54_11795	COG1570	exodeoxyribonuclease VII activity
FED54_11830	COG1280	lysine exporter protein (LysE YggA)
FED54_11835	COG1278	Cold shock
FED54_11875	COG2814	Major facilitator Superfamily
FED54_11880	COG1733	regulation of RNA biosynthetic process
FED54_12045	COG5410	chromosome segregation
FED54_12050	COG3567	Phage-associated protein, HI1409 family
FED54_12070	COG3566	protein conserved in bacteria
FED54_12230	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
FED54_12240	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
FED54_12245	COG1137	ATPase activity
FED54_12250	COG1538	Outer membrane efflux protein
FED54_12290	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FED54_12305	COG1522	sequence-specific DNA binding
FED54_12310	COG5006	permease, DMT superfamily
FED54_12320	COG1560	Kdo2-lipid A biosynthetic process
FED54_12325	COG0598	Magnesium transport protein CorA
FED54_12345	COG2814	Major facilitator Superfamily
FED54_12365	COG1250	3-hydroxyacyl-CoA dehydrogenase
FED54_12385	COG0583	DNA-binding transcription factor activity
FED54_12390	COG1914	H( )-stimulated, divalent metal cation uptake system
FED54_12410	COG4770	biotin carboxylase activity
FED54_12415	COG0038	chloride channel
FED54_12420	COG2831	hemolysin activation secretion protein
FED54_12425	COG3210	domain, Protein
FED54_12440	COG1309	transcriptional regulator
FED54_12450	COG1063	alcohol dehydrogenase
FED54_12465	COG0439	Biotin carboxylase
FED54_12470	COG2249	NAD(P)H dehydrogenase (quinone) activity
FED54_12475	COG1733	regulation of RNA biosynthetic process
FED54_12485	COG0864	Transcriptional regulator
FED54_12495	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FED54_12500	COG1116	anion transmembrane transporter activity
FED54_12610	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FED54_12610	COG2885	chlorophyll binding
FED54_12650	COG0583	DNA-binding transcription factor activity
FED54_12660	COG0590	tRNA wobble adenosine to inosine editing
FED54_12665	COG2807	transmembrane transport
FED54_12680	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FED54_12690	COG0789	Transcriptional regulator
FED54_12705	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FED54_12735	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FED54_12760	COG1012	belongs to the aldehyde dehydrogenase family
FED54_12765	COG0531	amino acid
FED54_12770	COG1760	l-serine dehydratase
FED54_12775	COG1012	belongs to the aldehyde dehydrogenase family
FED54_12775	COG2030	dehydratase
FED54_12780	COG3396	Phenylacetate-CoA oxygenase
FED54_12785	COG3460	Phenylacetate-CoA oxygenase
FED54_12790	COG3396	Phenylacetate-CoA oxygenase
FED54_12795	COG2151	metal-sulfur cluster biosynthetic enzyme
FED54_12800	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FED54_12805	COG1024	Enoyl-CoA hydratase
FED54_12810	COG1024	Enoyl-CoA hydratase
FED54_12815	COG1250	3-hydroxyacyl-CoA dehydrogenase
FED54_12820	COG0183	Belongs to the thiolase family
FED54_12825	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
FED54_12830	COG3327	negative regulation of DNA-templated transcription, initiation
FED54_12840	COG2050	protein possibly involved in aromatic compounds catabolism
FED54_12850	COG0556	nucleotide-excision repair
FED54_12870	COG2207	Transcriptional regulator
FED54_12885	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FED54_12890	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FED54_12895	COG2271	Major facilitator Superfamily
FED54_12900	COG0753	catalase activity
FED54_12905	COG3038	cytochrome b561
FED54_12925	COG2267	carboxylic ester hydrolase activity
FED54_12930	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FED54_12935	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FED54_12940	COG1012	belongs to the aldehyde dehydrogenase family
FED54_12950	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
FED54_12960	COG1012	belongs to the aldehyde dehydrogenase family
FED54_12965	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FED54_12970	COG0583	DNA-binding transcription factor activity
FED54_12980	COG1414	Transcriptional regulator
FED54_12985	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FED54_12995	COG1840	ABC-type Fe3 transport system, periplasmic component
FED54_13000	COG3842	ATPase activity
FED54_13015	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FED54_13020	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FED54_13025	COG2814	Major facilitator Superfamily
FED54_13030	COG1960	acyl-CoA dehydrogenase activity
FED54_13045	COG1024	Enoyl-CoA hydratase
FED54_13055	COG2814	Major facilitator Superfamily
FED54_13065	COG0183	Belongs to the thiolase family
FED54_13070	COG1250	3-hydroxyacyl-CoA dehydrogenase
FED54_13075	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_13080	COG1024	Enoyl-CoA hydratase
FED54_13085	COG1960	acyl-CoA dehydrogenase activity
FED54_13095	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FED54_13100	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FED54_13110	COG2814	Major facilitator Superfamily
FED54_13120	COG1960	acyl-CoA dehydrogenase activity
FED54_13135	COG0583	DNA-binding transcription factor activity
FED54_13150	COG1024	Enoyl-CoA hydratase
FED54_13155	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FED54_13160	COG1960	acyl-CoA dehydrogenase activity
FED54_13165	COG1309	transcriptional regulator
FED54_13170	COG0318	PFAM AMP-dependent synthetase and ligase
FED54_13190	COG0583	DNA-binding transcription factor activity
FED54_13235	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_13255	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FED54_13275	COG0784	Response regulator, receiver
FED54_13275	COG2205	protein histidine kinase activity
FED54_13315	COG0765	amino acid transport
FED54_13320	COG0765	amino acid transport
FED54_13330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FED54_13335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FED54_13350	COG1280	lysine exporter protein (LysE YggA)
FED54_13355	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FED54_13360	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FED54_13365	COG1045	serine acetyltransferase
FED54_13380	COG0583	DNA-binding transcription factor activity
FED54_13385	COG0625	glutathione transferase activity
FED54_13390	COG0625	glutathione transferase activity
FED54_13395	COG0583	DNA-binding transcription factor activity
FED54_13405	COG1346	cytolysis
FED54_13430	COG0300	oxidoreductase activity
FED54_13440	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
FED54_13445	COG3052	prosthetic group binding
FED54_13465	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FED54_13485	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FED54_13495	COG1294	oxidase, subunit
FED54_13500	COG1271	oxidase subunit
FED54_13535	COG0477	Major facilitator Superfamily
FED54_13545	COG4521	taurine ABC transporter
FED54_13550	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FED54_13555	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FED54_13560	COG2175	clavaminate synthase activity
FED54_13570	COG1953	Uracil, thiamine, allantoin
FED54_13590	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
FED54_13605	COG0640	Transcriptional regulator
FED54_13610	COG0798	PFAM Bile acid sodium symporter
FED54_13615	COG0583	DNA-binding transcription factor activity
FED54_13630	COG3634	alkyl hydroperoxide reductase activity
FED54_13670	COG0436	Aminotransferase
FED54_13680	COG0386	Belongs to the glutathione peroxidase family
FED54_13720	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FED54_13745	COG0012	GTP binding
FED54_13750	COG2011	ABC-type metal ion transport system permease component
FED54_13755	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FED54_13765	COG1464	Belongs to the NlpA lipoprotein family
FED54_13795	COG0765	amino acid transport
FED54_13800	COG0765	amino acid transport
FED54_13805	COG1126	abc transporter atp-binding protein
FED54_13815	COG1522	sequence-specific DNA binding
FED54_13830	COG1309	transcriptional regulator
FED54_13855	COG0583	DNA-binding transcription factor activity
FED54_13870	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
FED54_13880	COG0697	spore germination
FED54_13910	COG3121	Chaperone
FED54_13915	COG3539	Fimbrial protein
FED54_13940	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FED54_13940	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
FED54_13985	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FED54_13995	COG2353	YceI-like domain
FED54_14005	COG3698	Phosphodiester glycosidase
FED54_14020	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FED54_14025	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FED54_14025	COG0506	proline dehydrogenase activity
FED54_14025	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FED54_14035	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FED54_14040	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
FED54_14060	COG1132	(ABC) transporter
FED54_14065	COG3122	Protein conserved in bacteria
FED54_14070	COG3619	membrane
FED54_14080	COG0640	Transcriptional regulator
FED54_14090	COG2850	peptidyl-arginine hydroxylation
FED54_14095	COG0424	maF-like protein
FED54_14115	COG0191	fructose-bisphosphate aldolase activity
FED54_14120	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FED54_14135	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FED54_14145	COG1192	Involved in chromosome partitioning
FED54_14150	COG1475	DNA binding
FED54_14155	COG0811	peptide transport
FED54_14165	COG1132	(ABC) transporter
FED54_14170	COG1663	tetraacyldisaccharide 4'-kinase activity
FED54_14190	COG0084	hydrolase, TatD family'
FED54_14205	COG2165	general secretion pathway protein
FED54_14235	COG0590	tRNA wobble adenosine to inosine editing
FED54_14255	COG0776	regulation of translation
FED54_14285	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FED54_14290	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
FED54_14330	COG4166	transmembrane transport
FED54_14340	COG0339	signal peptide processing
FED54_14350	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FED54_14385	COG0702	epimerase
FED54_14390	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FED54_14410	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FED54_14440	COG0316	Belongs to the HesB IscA family
FED54_14445	COG0822	iron-sulfur transferase activity
FED54_14470	COG0776	regulation of translation
FED54_14475	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FED54_14480	COG2207	Transcriptional regulator
FED54_14485	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FED54_14490	COG1960	acyl-CoA dehydrogenase activity
FED54_14495	COG1960	acyl-CoA dehydrogenase activity
FED54_14510	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FED54_14530	COG4264	IucA IucC family
FED54_14535	COG4264	IucA IucC family
FED54_14545	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FED54_14595	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
FED54_14600	COG0406	alpha-ribazole phosphatase activity
FED54_14615	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FED54_14625	COG0730	response to heat
FED54_14650	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FED54_14665	COG1131	(ABC) transporter
FED54_14670	COG0842	Transport permease protein
FED54_14675	COG0842	Transport permease protein
FED54_14730	COG2226	methyltransferase
FED54_14760	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
FED54_14795	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FED54_14805	COG0133	tryptophan synthase activity
FED54_14820	COG3706	GGDEF domain
FED54_14835	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
FED54_14840	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FED54_14845	COG0022	dehydrogenase e1 component
FED54_14850	COG0508	dehydrogenase complex catalyzes the overall conversion of
FED54_14855	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FED54_14865	COG1063	alcohol dehydrogenase
FED54_14870	COG3781	membrane
FED54_14880	COG3453	Protein conserved in bacteria
FED54_14880	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FED54_14890	COG0730	response to heat
FED54_14905	COG3708	Transcriptional regulator
FED54_14905	COG2207	Transcriptional regulator
FED54_14910	COG1733	regulation of RNA biosynthetic process
FED54_14915	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
FED54_14945	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FED54_14965	COG0477	Major facilitator Superfamily
FED54_14975	COG1027	Aspartate ammonia-lyase
FED54_14990	COG0583	DNA-binding transcription factor activity
FED54_14995	COG0583	DNA-binding transcription factor activity
FED54_15000	COG0183	Belongs to the thiolase family
FED54_15005	COG2031	fatty acid transporter
FED54_15020	COG0583	DNA-binding transcription factor activity
FED54_15040	COG1309	transcriptional regulator
FED54_15050	COG2610	gluconate transmembrane transporter activity
FED54_15055	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_15060	COG2207	Transcriptional regulator
FED54_15070	COG0412	Dienelactone hydrolase
FED54_15075	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_15085	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FED54_15100	COG0543	2 iron, 2 sulfur cluster binding
FED54_15100	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FED54_15105	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
FED54_15110	COG4638	Rieske (2fe-2S)
FED54_15120	COG0725	ABC transporter, periplasmic molybdate-binding protein
FED54_15125	COG4149	molybdate abc transporter
FED54_15130	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
FED54_15135	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_15140	COG1535	isochorismatase
FED54_15140	COG3433	isochorismatase activity
FED54_15205	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FED54_15220	COG0753	catalase activity
FED54_15235	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
FED54_15265	COG3539	Fimbrial protein
FED54_15290	COG0747	negative chemotaxis
FED54_15295	COG0601	transmembrane transport
FED54_15300	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FED54_15320	COG1132	(ABC) transporter
FED54_15325	COG1132	(ABC) transporter
FED54_15345	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FED54_15360	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FED54_15375	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FED54_15380	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FED54_15385	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FED54_15390	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FED54_15420	COG4771	TonB-dependent receptor
FED54_15425	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FED54_15440	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FED54_15445	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FED54_15450	COG0745	RESPONSE REGULATOR receiver
FED54_15455	COG2205	protein histidine kinase activity
FED54_15465	COG2207	Transcriptional regulator
FED54_15480	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_15515	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
FED54_15565	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
FED54_15585	COG1120	ATPase activity
FED54_15600	COG1064	alcohol dehydrogenase
FED54_15615	COG2207	Transcriptional regulator
FED54_15620	COG2084	Dehydrogenase
FED54_15630	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FED54_15635	COG0583	DNA-binding transcription factor activity
FED54_15645	COG0129	dihydroxy-acid dehydratase activity
FED54_15650	COG1012	belongs to the aldehyde dehydrogenase family
FED54_15665	COG1566	PFAM secretion protein HlyD family protein
FED54_15675	COG2271	Major facilitator Superfamily
FED54_15690	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FED54_15715	COG0583	DNA-binding transcription factor activity
FED54_15775	COG4993	Dehydrogenase
FED54_15780	COG1733	regulation of RNA biosynthetic process
FED54_15795	COG2259	Doxx family
FED54_15800	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
FED54_15850	COG1309	transcriptional regulator
FED54_15880	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
FED54_15890	COG0446	pyridine nucleotide-disulphide oxidoreductase
FED54_15890	COG1902	pentaerythritol trinitrate reductase activity
FED54_15895	COG1846	Transcriptional regulator
FED54_15930	COG0753	catalase activity
FED54_15945	COG1012	belongs to the aldehyde dehydrogenase family
FED54_15960	COG3162	membrane
FED54_15975	COG3829	transcription factor binding
FED54_15980	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_15985	COG1960	acyl-CoA dehydrogenase activity
FED54_16000	COG3231	kanamycin kinase activity
FED54_16005	COG1012	belongs to the aldehyde dehydrogenase family
FED54_16025	COG2186	Transcriptional regulator
FED54_16035	COG0583	DNA-binding transcription factor activity
FED54_16040	COG4948	Mandelate Racemase Muconate Lactonizing
FED54_16045	COG4829	muconolactone delta-isomerase
FED54_16055	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FED54_16060	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FED54_16065	COG0183	Belongs to the thiolase family
FED54_16070	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FED54_16075	COG1012	belongs to the aldehyde dehydrogenase family
FED54_16085	COG3733	amine oxidase
FED54_16095	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FED54_16105	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_16115	COG4638	Rieske (2fe-2S)
FED54_16135	COG0154	amidase activity
FED54_16145	COG2814	Major facilitator Superfamily
FED54_16170	COG1960	acyl-CoA dehydrogenase activity
FED54_16175	COG0583	DNA-binding transcription factor activity
FED54_16180	COG1414	Transcriptional regulator
FED54_16195	COG2391	methyltransferase activity
FED54_16205	COG4993	Dehydrogenase
FED54_16210	COG3659	wide pore channel activity
FED54_16215	COG3420	alginic acid biosynthetic process
FED54_16220	COG0710	3-dehydroquinate dehydratase activity
FED54_16225	COG3485	protocatechuate 3,4-dioxygenase
FED54_16230	COG3485	protocatechuate 3,4-dioxygenase
FED54_16235	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FED54_16240	COG2271	Major facilitator Superfamily
FED54_16245	COG0596	Alpha beta hydrolase
FED54_16250	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FED54_16255	COG0183	Belongs to the thiolase family
FED54_16260	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FED54_16265	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FED54_16275	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
FED54_16325	COG1902	pentaerythritol trinitrate reductase activity
FED54_16325	COG0446	pyridine nucleotide-disulphide oxidoreductase
FED54_16340	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FED54_16350	COG0542	response to heat
FED54_16355	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
FED54_16385	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FED54_16390	COG0569	domain protein
FED54_16395	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FED54_16410	COG4774	siderophore transport
FED54_16415	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FED54_16425	COG1585	Membrane protein implicated in regulation of membrane protease activity
FED54_16440	COG1294	oxidase, subunit
FED54_16445	COG4890	Cyd operon protein YbgT
FED54_16455	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
FED54_16465	COG0552	protein localization to endoplasmic reticulum
FED54_16495	COG0516	GMP reductase activity
FED54_16495	COG0517	IMP dehydrogenase activity
FED54_16500	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FED54_16505	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FED54_16515	COG0583	DNA-binding transcription factor activity
FED54_16520	COG0024	Methionine aminopeptidase
FED54_16550	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FED54_16550	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
FED54_16555	COG1105	Belongs to the carbohydrate kinase PfkB family
FED54_16560	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
FED54_16560	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FED54_16560	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FED54_16575	COG3300	MHYT domain
FED54_16575	COG5001	Diguanylate cyclase
FED54_16600	COG2135	peptidase activity
FED54_16620	COG1113	amino acid transport
FED54_16630	COG1522	sequence-specific DNA binding
FED54_16655	COG1011	Hydrolase
FED54_16660	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
FED54_16670	COG2137	regulation of response to DNA damage stimulus
FED54_16685	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FED54_16720	COG0575	Belongs to the CDS family
FED54_16725	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FED54_16750	COG3852	Histidine kinase
FED54_16755	COG2204	response regulator
FED54_16815	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FED54_16820	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
FED54_16840	COG0697	spore germination
FED54_16845	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FED54_16855	COG0303	'Molybdopterin
FED54_16860	COG0521	Mo-molybdopterin cofactor biosynthetic process
FED54_16860	COG0315	cyclic pyranopterin monophosphate synthase activity
FED54_16875	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FED54_16890	COG0243	molybdopterin cofactor binding
FED54_16895	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FED54_16900	COG2146	nitrite reductase [NAD(P)H] activity
FED54_16900	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FED54_16910	COG0745	RESPONSE REGULATOR receiver
FED54_16915	COG1116	anion transmembrane transporter activity
FED54_16915	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FED54_16935	COG0511	ligase activity, forming carbon-carbon bonds
FED54_16950	COG2814	Major facilitator Superfamily
FED54_16990	COG5301	cellulose 1,4-beta-cellobiosidase activity
FED54_17285	COG0069	glutamate synthase activity
FED54_17305	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FED54_17315	COG1454	alcohol dehydrogenase
FED54_17320	COG0824	Thioesterase
FED54_17330	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FED54_17370	COG0183	Belongs to the thiolase family
FED54_17380	COG0583	DNA-binding transcription factor activity
FED54_17395	COG1522	sequence-specific DNA binding
FED54_17400	COG3135	benzoate transporter
FED54_17410	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
FED54_17425	COG0589	response to stress
FED54_17430	COG0488	(ABC) transporter
FED54_17455	COG4773	Receptor
FED54_17485	COG0668	transmembrane transport
FED54_17555	COG2814	Major facilitator Superfamily
FED54_17560	COG2814	Major facilitator Superfamily
FED54_17565	COG0446	pyridine nucleotide-disulphide oxidoreductase
FED54_17570	COG3384	dioxygenase
FED54_17575	COG1028	Short-chain dehydrogenase reductase Sdr
FED54_17585	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
FED54_17590	COG4638	Rieske (2fe-2S)
FED54_17595	COG0583	DNA-binding transcription factor activity
FED54_17615	COG4569	acetaldehyde dehydrogenase (acetylating) activity
FED54_17620	COG3971	2-oxopent-4-enoate hydratase activity
FED54_17630	COG2271	Major facilitator Superfamily
FED54_17635	COG1234	tRNA 3'-trailer cleavage
FED54_17670	COG1538	Outer membrane efflux protein
FED54_17690	COG2885	chlorophyll binding
FED54_17690	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FED54_17720	COG2885	chlorophyll binding
FED54_17720	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FED54_17745	COG1605	Chorismate mutase
FED54_17765	COG0308	aminopeptidase N
FED54_17785	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
FED54_17795	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FED54_17800	COG1454	alcohol dehydrogenase
FED54_17820	COG0531	amino acid
FED54_17825	COG4303	Ethanolamine ammonia lyase large subunit
FED54_17830	COG4302	ethanolamine ammonia-lyase activity
FED54_17835	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FED54_17835	COG0519	Catalyzes the synthesis of GMP from XMP
FED54_17840	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FED54_17865	COG0697	spore germination
FED54_17870	COG1923	regulation of RNA biosynthetic process
FED54_17880	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
FED54_17885	COG0802	atpase or kinase
FED54_17905	COG1187	pseudouridine synthase activity
FED54_17920	COG0583	DNA-binding transcription factor activity
FED54_17940	COG2814	Major facilitator Superfamily
FED54_17945	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FED54_17975	COG0729	surface antigen
FED54_17995	COG0174	glutamine synthetase
FED54_18000	COG0745	RESPONSE REGULATOR receiver
FED54_18005	COG2205	protein histidine kinase activity
FED54_18015	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
FED54_18020	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
FED54_18045	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FED54_18050	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FED54_18055	COG1960	acyl-CoA dehydrogenase activity
FED54_18085	COG0583	DNA-binding transcription factor activity
FED54_18105	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FED54_18115	COG3658	cytochrome
FED54_18120	COG1215	transferase activity, transferring glycosyl groups
FED54_18125	COG1649	PFAM Uncharacterised BCR, COG1649
FED54_18125	COG0726	polysaccharide deacetylase
FED54_18150	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FED54_18155	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FED54_18165	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FED54_18190	COG0305	Participates in initiation and elongation during chromosome replication
FED54_18195	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FED54_18205	COG1305	Transglutaminase-like
FED54_18215	COG2308	Evidence 4 Homologs of previously reported genes of
FED54_18245	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
FED54_18255	COG0151	Belongs to the GarS family
FED54_18260	COG1464	Belongs to the NlpA lipoprotein family
FED54_18265	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FED54_18270	COG2011	ABC-type metal ion transport system permease component
FED54_18275	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FED54_18285	COG1301	dicarboxylic acid transport
FED54_18310	COG2814	Major facilitator Superfamily
FED54_18325	COG1309	transcriptional regulator
FED54_18345	COG1794	racemase activity, acting on amino acids and derivatives
FED54_18350	COG0492	ferredoxin-NADP+ reductase activity
FED54_18350	COG3118	belongs to the thioredoxin family
FED54_18365	COG3008	intermembrane lipid transfer
FED54_18365	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FED54_18370	COG2995	paraquat-inducible protein a
FED54_18410	COG1051	belongs to the nudix hydrolase family
FED54_18415	COG0477	Major facilitator Superfamily
FED54_18470	COG2186	Transcriptional regulator
FED54_18480	COG0786	glutamate:sodium symporter activity
FED54_18485	COG3243	poly(R)-hydroxyalkanoic acid synthase
FED54_18510	COG3111	PFAM Bacterial OB fold (BOF) protein
FED54_18520	COG2226	methyltransferase
FED54_18605	COG3210	domain, Protein
FED54_18605	COG3210	domain, Protein
FED54_18610	COG2831	hemolysin activation secretion protein
FED54_18635	COG2815	serine threonine protein kinase
FED54_18635	COG0515	serine threonine protein kinase
FED54_18660	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FED54_18665	COG1610	YqeY-like protein
FED54_18670	COG4783	chaperone-mediated protein folding
FED54_18695	COG1286	toxin biosynthetic process
FED54_18720	COG3179	chitinase
FED54_18875	COG5410	chromosome segregation
FED54_18975	COG0305	Participates in initiation and elongation during chromosome replication
FED54_19095	COG0778	Nitroreductase
FED54_19105	COG0513	Belongs to the DEAD box helicase family
FED54_19125	COG2363	Small membrane protein
FED54_19155	COG4650	regulator
FED54_19160	COG1234	tRNA 3'-trailer cleavage
FED54_19165	COG1690	Belongs to the RtcB family
FED54_19185	COG2195	Cleaves the N-terminal amino acid of tripeptides
FED54_19195	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
FED54_19205	COG2819	hydrolase of the alpha beta superfamily
FED54_19210	COG1960	acyl-CoA dehydrogenase activity
FED54_19215	COG1301	dicarboxylic acid transport
FED54_19225	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FED54_19230	COG3139	Protein of unknown function (DUF1315)
FED54_19235	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
FED54_19240	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FED54_19250	COG0494	nUDIX hydrolase
FED54_19260	COG0642	Histidine kinase
FED54_19265	COG0745	RESPONSE REGULATOR receiver
FED54_19285	COG1720	tRNA m6t6A37 methyltransferase activity
FED54_19300	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FED54_19310	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FED54_19320	COG4598	ABC transporter
FED54_19325	COG4160	amino acid transport
FED54_19330	COG4215	(ABC) transporter
FED54_19355	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FED54_19365	COG1538	Outer membrane efflux protein
FED54_19580	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FED54_19640	COG0582	viral genome integration into host DNA
FED54_19645	COG1131	(ABC) transporter
FED54_19650	COG0842	Transport permease protein
FED54_19665	COG0772	Belongs to the SEDS family
FED54_19670	COG2951	lytic endotransglycosylase activity
FED54_19695	COG2207	Transcriptional regulator
FED54_19710	COG0052	Belongs to the universal ribosomal protein uS2 family
FED54_19715	COG0024	Methionine aminopeptidase
FED54_19725	COG2223	nitrite transmembrane transporter activity
FED54_19735	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FED54_19740	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
FED54_19745	COG1960	acyl-CoA dehydrogenase activity
FED54_19760	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
FED54_19765	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
FED54_19770	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FED54_19790	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FED54_19795	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FED54_19800	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FED54_19835	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
FED54_19850	COG3104	oligopeptide transport
FED54_19860	COG0512	Glutamine amidotransferase of anthranilate synthase
FED54_19885	COG2840	Smr protein MutS2
FED54_19895	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FED54_19925	COG3739	integral membrane protein
FED54_19940	COG1169	isochorismate synthase
FED54_19950	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
FED54_19955	COG5265	(ABC) transporter
FED54_19960	COG1132	(ABC) transporter
FED54_19975	COG1535	isochorismatase
FED54_19975	COG3433	isochorismatase activity
FED54_19980	COG1021	2,3-dihydroxybenzoate-AMP ligase
FED54_19985	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FED54_19995	COG4774	siderophore transport
FED54_20000	COG4607	ABC-type enterochelin transport system periplasmic component
FED54_20005	COG4604	ABC transporter, ATP-binding protein
FED54_20010	COG4605	iron ion homeostasis
FED54_20015	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FED54_20020	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FED54_20035	COG2964	Protein conserved in bacteria
FED54_20045	COG1741	Belongs to the pirin family
FED54_20090	COG2879	small protein
FED54_20095	COG1966	Carbon starvation protein
FED54_20115	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FED54_20135	COG2211	Major facilitator Superfamily
FED54_20140	COG1067	ATP-dependent peptidase activity
FED54_20145	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FED54_20175	COG0739	heme binding
FED54_20365	COG0501	Belongs to the peptidase M48B family
FED54_20415	COG0589	response to stress
FED54_20420	COG0659	secondary active sulfate transmembrane transporter activity
FED54_20450	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
FED54_20500	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FED54_20550	COG3316	Transposase and inactivated derivatives
FED54_20565	COG3173	Aminoglycoside phosphotransferase
FED54_20585	COG0482	sulfurtransferase activity
FED54_20675	COG3316	Transposase and inactivated derivatives
FED54_20740	COG1192	Involved in chromosome partitioning
FED54_20760	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FED54_20810	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FED54_20890	COG3316	Transposase and inactivated derivatives
FED54_20930	COG3316	Transposase and inactivated derivatives
FED54_20980	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
FED54_21000	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
FED54_21030	COG0659	secondary active sulfate transmembrane transporter activity
FED54_21035	COG3316	Transposase and inactivated derivatives
FED54_21090	COG1373	ATPase (AAA superfamily
FED54_21145	COG3316	Transposase and inactivated derivatives
FED54_21210	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FED54_21260	COG1192	Involved in chromosome partitioning
FED54_21335	COG2832	Protein of unknown function (DUF454)