locus-tag class description FE003_00005 PF11638 DnaA N-terminal domain FE003_00005 PF08299 Bacterial dnaA protein helix-turn-helix FE003_00005 PF00308 Bacterial dnaA protein FE003_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain FE003_00010 PF02767 DNA polymerase III beta subunit, central domain FE003_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain FE003_00015 PF02463 RecF/RecN/SMC N terminal domain FE003_00020 PF01751 Toprim domain FE003_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_00020 PF18053 DNA gyrase B subunit insert domain FE003_00020 PF00986 DNA gyrase B subunit, carboxyl terminus FE003_00020 PF00204 DNA gyrase B FE003_00030 PF09335 SNARE associated Golgi protein FE003_00035 PF12848 ABC transporter FE003_00035 PF00005 ABC transporter FE003_00055 PF01521 Iron-sulphur cluster biosynthesis FE003_00060 PF00561 alpha/beta hydrolase fold FE003_00065 PF03702 Anhydro-N-acetylmuramic acid kinase FE003_00070 PF00579 tRNA synthetases class I (W and Y) FE003_00115 PF00209 Sodium:neurotransmitter symporter family FE003_00125 PF01029 NusB family FE003_00125 PF01189 16S rRNA methyltransferase RsmB/F FE003_00130 PF00551 Formyl transferase FE003_00130 PF02911 Formyl transferase, C-terminal domain FE003_00135 PF00920 Dehydratase family FE003_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_00150 PF03466 LysR substrate binding domain FE003_00155 PF00860 Permease family FE003_00160 PF00311 Phosphoenolpyruvate carboxylase FE003_00165 PF08361 MAATS-type transcriptional repressor, C-terminal region FE003_00165 PF00440 Bacterial regulatory proteins, tetR family FE003_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FE003_00175 PF00873 AcrB/AcrD/AcrF family FE003_00185 PF00684 DnaJ central domain FE003_00185 PF00226 DnaJ domain FE003_00185 PF01556 DnaJ C terminal domain FE003_00195 PF01113 Dihydrodipicolinate reductase, N-terminus FE003_00195 PF05173 Dihydrodipicolinate reductase, C-terminus FE003_00205 PF07690 Major Facilitator Superfamily FE003_00210 PF00248 Aldo/keto reductase family FE003_00215 PF03466 LysR substrate binding domain FE003_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_00230 PF00155 Aminotransferase class I and II FE003_00230 PF00392 Bacterial regulatory proteins, gntR family FE003_00235 PF08240 Alcohol dehydrogenase GroES-like domain FE003_00235 PF00107 Zinc-binding dehydrogenase FE003_00240 PF03352 Methyladenine glycosylase FE003_00255 PF14815 NUDIX domain FE003_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein FE003_00255 PF10576 Iron-sulfur binding domain of endonuclease III FE003_00255 PF00633 Helix-hairpin-helix motif FE003_00270 PF07043 Protein of unknown function (DUF1328) FE003_00275 PF03692 Putative zinc- or iron-chelating domain FE003_00280 PF07995 Glucose / Sorbosone dehydrogenase FE003_00285 PF12002 MgsA AAA+ ATPase C terminal FE003_00285 PF16193 AAA C-terminal domain FE003_00285 PF00004 ATPase family associated with various cellular activities (AAA) FE003_00290 PF01226 Formate/nitrite transporter FE003_00300 PF01259 SAICAR synthetase FE003_00310 PF00701 Dihydrodipicolinate synthetase family FE003_00315 PF00857 Isochorismatase family FE003_00320 PF01758 Sodium Bile acid symporter family FE003_00325 PF01554 MatE FE003_00330 PF04463 Protein of unknown function (DUF523) FE003_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FE003_00345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FE003_00350 PF14497 Glutathione S-transferase, C-terminal domain FE003_00350 PF02798 Glutathione S-transferase, N-terminal domain FE003_00360 PF00324 Amino acid permease FE003_00370 PF07683 Cobalamin synthesis protein cobW C-terminal domain FE003_00370 PF02492 CobW/HypB/UreG, nucleotide-binding domain FE003_00380 PF07702 UTRA domain FE003_00380 PF00392 Bacterial regulatory proteins, gntR family FE003_00385 PF05962 HutD FE003_00390 PF01175 Urocanase Rossmann-like domain FE003_00390 PF17392 Urocanase C-terminal domain FE003_00390 PF17391 Urocanase N-terminal domain FE003_00395 PF00221 Aromatic amino acid lyase FE003_00400 PF00324 Amino acid permease FE003_00405 PF01979 Amidohydrolase family FE003_00410 PF00491 Arginase family FE003_00425 PF01177 Asp/Glu/Hydantoin racemase FE003_00430 PF01380 SIS domain FE003_00435 PF14602 Hexapeptide repeat of succinyl-transferase FE003_00435 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_00435 PF12804 MobA-like NTP transferase domain FE003_00440 PF04608 Phosphatidylglycerophosphatase A FE003_00445 PF00586 AIR synthase related protein, N-terminal domain FE003_00445 PF02769 AIR synthase related protein, C-terminal domain FE003_00450 PF01029 NusB family FE003_00455 PF00885 6,7-dimethyl-8-ribityllumazine synthase FE003_00460 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FE003_00460 PF00925 GTP cyclohydrolase II FE003_00490 PF02580 D-Tyr-tRNA(Tyr) deacylase FE003_00495 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FE003_00495 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FE003_00500 PF00581 Rhodanese-like domain FE003_00505 PF02666 Phosphatidylserine decarboxylase FE003_00510 PF03069 Acetamidase/Formamidase family FE003_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_00530 PF00512 His Kinase A (phospho-acceptor) domain FE003_00530 PF00989 PAS fold FE003_00530 PF11808 Phosphate regulon sensor protein PhoR FE003_00535 PF00072 Response regulator receiver domain FE003_00535 PF00486 Transcriptional regulatory protein, C terminal FE003_00545 PF00106 short chain dehydrogenase FE003_00550 PF01554 MatE FE003_00555 PF00155 Aminotransferase class I and II FE003_00560 PF04286 Protein of unknown function (DUF445) FE003_00575 PF04262 Glutamate-cysteine ligase FE003_00580 PF02600 Disulfide bond formation protein DsbB FE003_00585 PF04717 Type VI secretion system, phage-baseplate injector FE003_00590 PF01476 LysM domain FE003_00590 PF00877 NlpC/P60 family FE003_00605 PF05728 Uncharacterised protein family (UPF0227) FE003_00610 PF01751 Toprim domain FE003_00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_00610 PF00986 DNA gyrase B subunit, carboxyl terminus FE003_00610 PF00204 DNA gyrase B FE003_00615 PF00106 short chain dehydrogenase FE003_00620 PF04115 Ureidoglycolate lyase FE003_00625 PF03561 Allantoicase repeat FE003_00630 PF01494 FAD binding domain FE003_00640 PF00860 Permease family FE003_00645 PF00576 HIUase/Transthyretin family FE003_00675 PF11412 Disulphide bond corrector protein DsbC FE003_00675 PF02683 Cytochrome C biogenesis protein transmembrane region FE003_00680 PF07694 5TMR of 5TMR-LYT FE003_00680 PF00990 Diguanylate cyclase, GGDEF domain FE003_00685 PF07859 alpha/beta hydrolase fold FE003_00695 PF03960 ArsC family FE003_00700 PF03372 Endonuclease/Exonuclease/phosphatase family FE003_00705 PF00156 Phosphoribosyl transferase domain FE003_00710 PF07715 TonB-dependent Receptor Plug Domain FE003_00710 PF00593 TonB dependent receptor FE003_00720 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FE003_00720 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FE003_00725 PF04101 Glycosyltransferase family 28 C-terminal domain FE003_00725 PF03033 Glycosyltransferase family 28 N-terminal domain FE003_00730 PF08245 Mur ligase middle domain FE003_00730 PF02875 Mur ligase family, glutamate ligase domain FE003_00730 PF01225 Mur ligase family, catalytic domain FE003_00735 PF01820 D-ala D-ala ligase N-terminus FE003_00735 PF07478 D-ala D-ala ligase C-terminus FE003_00740 PF08478 POTRA domain, FtsQ-type FE003_00740 PF03799 Cell division protein FtsQ FE003_00745 PF02491 SHS2 domain inserted in FTSA FE003_00750 PF00091 Tubulin/FtsZ family, GTPase domain FE003_00750 PF12327 FtsZ family, C-terminal domain FE003_00755 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FE003_00765 PF01551 Peptidase family M23 FE003_00770 PF17831 Pyruvate dehydrogenase E1 component middle domain FE003_00770 PF00456 Transketolase, thiamine diphosphate binding domain FE003_00775 PF02817 e3 binding domain FE003_00775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FE003_00775 PF00364 Biotin-requiring enzyme FE003_00785 PF01169 Uncharacterized protein family UPF0016 FE003_00790 PF07715 TonB-dependent Receptor Plug Domain FE003_00790 PF00593 TonB dependent receptor FE003_00795 PF01613 Flavin reductase like domain FE003_00795 PF00258 Flavodoxin FE003_00800 PF03692 Putative zinc- or iron-chelating domain FE003_00805 PF00478 IMP dehydrogenase / GMP reductase domain FE003_00805 PF00571 CBS domain FE003_00810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FE003_00810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FE003_00810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FE003_00810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FE003_00815 PF01243 Pyridoxamine 5'-phosphate oxidase FE003_00815 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FE003_00820 PF02272 DHHA1 domain FE003_00820 PF17768 RecJ OB domain FE003_00820 PF01368 DHH family FE003_00840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FE003_00845 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FE003_00850 PF04452 RNA methyltransferase FE003_00875 PF00501 AMP-binding enzyme FE003_00875 PF13193 AMP-binding enzyme C-terminal domain FE003_00875 PF16177 Acetyl-coenzyme A synthetase N-terminus FE003_00880 PF00857 Isochorismatase family FE003_00885 PF01037 Lrp/AsnC ligand binding domain FE003_00890 PF00872 Transposase, Mutator family FE003_00895 PF00296 Luciferase-like monooxygenase FE003_00900 PF03358 NADPH-dependent FMN reductase FE003_00905 PF00072 Response regulator receiver domain FE003_00905 PF00196 Bacterial regulatory proteins, luxR family FE003_00915 PF00072 Response regulator receiver domain FE003_00915 PF00512 His Kinase A (phospho-acceptor) domain FE003_00915 PF01627 Hpt domain FE003_00915 PF00672 HAMP domain FE003_00915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_00920 PF04341 Protein of unknown function, DUF485 FE003_00925 PF00474 Sodium:solute symporter family FE003_00935 PF02028 BCCT, betaine/carnitine/choline family transporter FE003_00945 PF00990 Diguanylate cyclase, GGDEF domain FE003_00945 PF17158 Membrane-associated sensor, integral membrane domain FE003_00965 PF17760 UvrA interaction domain FE003_00965 PF00005 ABC transporter FE003_00965 PF17755 UvrA DNA-binding domain FE003_00970 PF00440 Bacterial regulatory proteins, tetR family FE003_00970 PF16925 Tetracyclin repressor-like, C-terminal domain FE003_00975 PF08240 Alcohol dehydrogenase GroES-like domain FE003_00975 PF00107 Zinc-binding dehydrogenase FE003_00985 PF06942 GlpM protein FE003_00990 PF03070 TENA/THI-4/PQQC family FE003_00990 PF02581 Thiamine monophosphate synthase FE003_00990 PF08543 Phosphomethylpyrimidine kinase FE003_01000 PF07690 Major Facilitator Superfamily FE003_01005 PF00436 Single-strand binding protein family FE003_01015 PF03591 AzlC protein FE003_01025 PF00324 Amino acid permease FE003_01030 PF00392 Bacterial regulatory proteins, gntR family FE003_01030 PF00155 Aminotransferase class I and II FE003_01035 PF00202 Aminotransferase class-III FE003_01040 PF00171 Aldehyde dehydrogenase family FE003_01045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_01050 PF00857 Isochorismatase family FE003_01055 PF02678 Pirin FE003_01055 PF05726 Pirin C-terminal cupin domain FE003_01060 PF01593 Flavin containing amine oxidoreductase FE003_01080 PF07690 Major Facilitator Superfamily FE003_01085 PF03466 LysR substrate binding domain FE003_01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_01105 PF00248 Aldo/keto reductase family FE003_01110 PF12833 Helix-turn-helix domain FE003_01110 PF02311 AraC-like ligand binding domain FE003_01140 PF01638 HxlR-like helix-turn-helix FE003_01150 PF02525 Flavodoxin-like fold FE003_01170 PF02705 K+ potassium transporter FE003_01195 PF00230 Major intrinsic protein FE003_01210 PF00977 Histidine biosynthesis protein FE003_01215 PF01636 Phosphotransferase enzyme family FE003_01230 PF03992 Antibiotic biosynthesis monooxygenase FE003_01245 PF00977 Histidine biosynthesis protein FE003_01260 PF00117 Glutamine amidotransferase class-I FE003_01265 PF00475 Imidazoleglycerol-phosphate dehydratase FE003_01285 PF00583 Acetyltransferase (GNAT) family FE003_01290 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FE003_01290 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FE003_01300 PF00672 HAMP domain FE003_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_01300 PF00512 His Kinase A (phospho-acceptor) domain FE003_01305 PF00072 Response regulator receiver domain FE003_01305 PF00486 Transcriptional regulatory protein, C terminal FE003_01310 PF17674 HHH domain FE003_01310 PF00575 S1 RNA binding domain FE003_01310 PF09371 Tex-like protein N-terminal domain FE003_01310 PF16921 Tex protein YqgF-like domain FE003_01315 PF01740 STAS domain FE003_01315 PF00916 Sulfate permease family FE003_01320 PF00106 short chain dehydrogenase FE003_01325 PF01053 Cys/Met metabolism PLP-dependent enzyme FE003_01330 PF00005 ABC transporter FE003_01330 PF12848 ABC transporter FE003_01355 PF04191 Phospholipid methyltransferase FE003_01375 PF00529 HlyD membrane-fusion protein of T1SS FE003_01375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FE003_01380 PF00873 AcrB/AcrD/AcrF family FE003_01385 PF01545 Cation efflux family FE003_01415 PF00324 Amino acid permease FE003_01430 PF00749 tRNA synthetases class I (E and Q), catalytic domain FE003_01445 PF01795 MraW methylase family FE003_01455 PF00905 Penicillin binding protein transpeptidase domain FE003_01455 PF03717 Penicillin-binding Protein dimerisation domain FE003_01460 PF08245 Mur ligase middle domain FE003_01460 PF01225 Mur ligase family, catalytic domain FE003_01460 PF02875 Mur ligase family, glutamate ligase domain FE003_01465 PF01225 Mur ligase family, catalytic domain FE003_01465 PF08245 Mur ligase middle domain FE003_01465 PF02875 Mur ligase family, glutamate ligase domain FE003_01470 PF00953 Glycosyl transferase family 4 FE003_01480 PF13847 Methyltransferase domain FE003_01485 PF17092 Penicillin-binding protein OB-like domain FE003_01485 PF00912 Transglycosylase FE003_01485 PF00905 Penicillin binding protein transpeptidase domain FE003_01510 PF03958 Bacterial type II/III secretion system short domain FE003_01510 PF07660 Secretin and TonB N terminus short domain FE003_01510 PF00263 Bacterial type II and III secretion system protein FE003_01510 PF11741 AMIN domain FE003_01515 PF01202 Shikimate kinase FE003_01520 PF01761 3-dehydroquinate synthase FE003_01530 PF01645 Conserved region in glutamate synthase FE003_01530 PF00310 Glutamine amidotransferases class-II FE003_01530 PF04898 Glutamate synthase central domain FE003_01530 PF01493 GXGXG motif FE003_01535 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_01535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FE003_01545 PF04011 LemA family FE003_01550 PF04536 TPM domain FE003_01560 PF00114 Pilin (bacterial filament) FE003_01560 PF07963 Prokaryotic N-terminal methylation motif FE003_01570 PF11846 Virulence factor membrane-bound polymerase, C-terminal FE003_01570 PF04932 O-Antigen ligase FE003_01570 PF15864 Protein glycosylation ligase FE003_01575 PF00210 Ferritin-like domain FE003_01580 PF04324 BFD-like [2Fe-2S] binding domain FE003_01585 PF01042 Endoribonuclease L-PSP FE003_01590 PF13291 ACT domain FE003_01590 PF04607 Region found in RelA / SpoT proteins FE003_01590 PF02824 TGS domain FE003_01600 PF01192 RNA polymerase Rpb6 FE003_01605 PF00625 Guanylate kinase FE003_01610 PF02401 LytB protein FE003_01650 PF00886 Ribosomal protein S16 FE003_01655 PF05239 PRC-barrel domain FE003_01655 PF01782 RimM N-terminal domain FE003_01660 PF01746 tRNA (Guanine-1)-methyltransferase FE003_01665 PF01245 Ribosomal protein L19 FE003_01670 PF00561 alpha/beta hydrolase fold FE003_01675 PF03280 Proteobacterial lipase chaperone protein FE003_01680 PF09157 Pseudouridine synthase II TruB, C-terminal FE003_01680 PF16198 tRNA pseudouridylate synthase B C-terminal domain FE003_01680 PF01509 TruB family pseudouridylate synthase (N terminal domain) FE003_01685 PF01925 Sulfite exporter TauE/SafE FE003_01695 PF00892 EamA-like transporter family FE003_01700 PF00892 EamA-like transporter family FE003_01705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FE003_01705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FE003_01710 PF02913 FAD linked oxidases, C-terminal domain FE003_01710 PF01565 FAD binding domain FE003_01720 PF03992 Antibiotic biosynthesis monooxygenase FE003_01725 PF02525 Flavodoxin-like fold FE003_01735 PF07690 Major Facilitator Superfamily FE003_01740 PF12805 FUSC-like inner membrane protein yccS FE003_01745 PF00080 Copper/zinc superoxide dismutase (SODC) FE003_01750 PF01594 AI-2E family transporter FE003_01755 PF13614 AAA domain FE003_01785 PF00324 Amino acid permease FE003_01790 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FE003_01790 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FE003_01795 PF00202 Aminotransferase class-III FE003_01800 PF04958 Arginine N-succinyltransferase beta subunit FE003_01805 PF00171 Aldehyde dehydrogenase family FE003_01810 PF04996 Succinylarginine dihydrolase FE003_01815 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FE003_01845 PF03466 LysR substrate binding domain FE003_01845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_01850 PF00892 EamA-like transporter family FE003_01860 PF05746 DALR anticodon binding domain FE003_01860 PF02092 Glycyl-tRNA synthetase beta subunit FE003_01865 PF02091 Glycyl-tRNA synthetase alpha subunit FE003_01890 PF00571 CBS domain FE003_01895 PF04024 PspC domain FE003_01905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_01905 PF12806 Acetyl-CoA dehydrogenase C-terminal like FE003_01905 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_01905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_01915 PF08501 Shikimate dehydrogenase substrate binding domain FE003_01915 PF01488 Shikimate / quinate 5-dehydrogenase FE003_01915 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FE003_01920 PF01218 Coproporphyrinogen III oxidase FE003_01925 PF00925 GTP cyclohydrolase II FE003_01930 PF02779 Transketolase, pyrimidine binding domain FE003_01930 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FE003_01930 PF02780 Transketolase, C-terminal domain FE003_01935 PF00459 Inositol monophosphatase family FE003_01940 PF00271 Helicase conserved C-terminal domain FE003_01940 PF12343 Cold shock protein DEAD box A FE003_01940 PF03880 DbpA RNA binding domain FE003_01940 PF00270 DEAD/DEAH box helicase FE003_01950 PF00005 ABC transporter FE003_01955 PF02405 Permease MlaE FE003_01965 PF05494 MlaC protein FE003_01975 PF01544 CorA-like Mg2+ transporter protein FE003_01980 PF03641 Possible lysine decarboxylase FE003_01985 PF00293 NUDIX domain FE003_01990 PF00156 Phosphoribosyl transferase domain FE003_01995 PF00270 DEAD/DEAH box helicase FE003_01995 PF00271 Helicase conserved C-terminal domain FE003_01995 PF17191 RecG wedge domain FE003_02010 PF01553 Acyltransferase FE003_02020 PF00375 Sodium:dicarboxylate symporter family FE003_02030 PF01926 50S ribosome-binding GTPase FE003_02035 PF02082 Transcriptional regulator FE003_02040 PF00042 Globin FE003_02040 PF00175 Oxidoreductase NAD-binding domain FE003_02040 PF00970 Oxidoreductase FAD-binding domain FE003_02045 PF05872 Bacterial protein of unknown function (DUF853) FE003_02050 PF01053 Cys/Met metabolism PLP-dependent enzyme FE003_02055 PF00117 Glutamine amidotransferase class-I FE003_02060 PF00338 Ribosomal protein S10p/S20e FE003_02065 PF00297 Ribosomal protein L3 FE003_02070 PF00573 Ribosomal protein L4/L1 family FE003_02075 PF00276 Ribosomal protein L23 FE003_02080 PF00181 Ribosomal Proteins L2, RNA binding domain FE003_02080 PF03947 Ribosomal Proteins L2, C-terminal domain FE003_02085 PF00203 Ribosomal protein S19 FE003_02090 PF00237 Ribosomal protein L22p/L17e FE003_02095 PF07650 KH domain FE003_02095 PF00189 Ribosomal protein S3, C-terminal domain FE003_02100 PF00252 Ribosomal protein L16p/L10e FE003_02105 PF00831 Ribosomal L29 protein FE003_02110 PF00366 Ribosomal protein S17 FE003_02115 PF00238 Ribosomal protein L14p/L23e FE003_02120 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FE003_02120 PF00467 KOW motif FE003_02125 PF00281 Ribosomal protein L5 FE003_02125 PF00673 ribosomal L5P family C-terminus FE003_02130 PF00253 Ribosomal protein S14p/S29e FE003_02135 PF00410 Ribosomal protein S8 FE003_02140 PF00347 Ribosomal protein L6 FE003_02145 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FE003_02150 PF00333 Ribosomal protein S5, N-terminal domain FE003_02150 PF03719 Ribosomal protein S5, C-terminal domain FE003_02155 PF00327 Ribosomal protein L30p/L7e FE003_02160 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FE003_02165 PF00344 SecY translocase FE003_02170 PF00444 Ribosomal protein L36 FE003_02175 PF00416 Ribosomal protein S13/S18 FE003_02180 PF00411 Ribosomal protein S11 FE003_02185 PF00163 Ribosomal protein S4/S9 N-terminal domain FE003_02185 PF01479 S4 domain FE003_02190 PF01000 RNA polymerase Rpb3/RpoA insert domain FE003_02190 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FE003_02190 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FE003_02195 PF01196 Ribosomal protein L17 FE003_02200 PF00743 Flavin-binding monooxygenase-like FE003_02205 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_02205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_02205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_02210 PF03937 Flavinator of succinate dehydrogenase FE003_02240 PF09526 Probable metal-binding protein (DUF2387) FE003_02245 PF01432 Peptidase family M3 FE003_02250 PF08461 Ribonuclease R winged-helix domain FE003_02250 PF08206 Ribonuclease B OB domain FE003_02250 PF00773 RNB domain FE003_02250 PF17876 Cold shock domain FE003_02250 PF00575 S1 RNA binding domain FE003_02295 PF01557 Fumarylacetoacetate (FAA) hydrolase family FE003_02300 PF12833 Helix-turn-helix domain FE003_02305 PF00892 EamA-like transporter family FE003_02310 PF03631 Virulence factor BrkB FE003_02315 PF03358 NADPH-dependent FMN reductase FE003_02340 PF02130 Uncharacterized protein family UPF0054 FE003_02345 PF02562 PhoH-like protein FE003_02350 PF01938 TRAM domain FE003_02350 PF04055 Radical SAM superfamily FE003_02350 PF00919 Uncharacterized protein family UPF0004 FE003_02355 PF01551 Peptidase family M23 FE003_02355 PF10145 Phage-related minor tail protein FE003_02355 PF01464 Transglycosylase SLT domain FE003_02365 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FE003_02365 PF00056 lactate/malate dehydrogenase, NAD binding domain FE003_02385 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FE003_02390 PF01066 CDP-alcohol phosphatidyltransferase FE003_02435 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_02435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_02435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_02440 PF17932 Tetracyclin repressor-like, C-terminal domain FE003_02440 PF00440 Bacterial regulatory proteins, tetR family FE003_02455 PF01039 Carboxyl transferase domain FE003_02460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_02460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_02460 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_02470 PF00364 Biotin-requiring enzyme FE003_02470 PF00289 Biotin carboxylase, N-terminal domain FE003_02470 PF02785 Biotin carboxylase C-terminal domain FE003_02470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FE003_02480 PF04386 Stringent starvation protein B FE003_02485 PF00043 Glutathione S-transferase, C-terminal domain FE003_02485 PF13417 Glutathione S-transferase, N-terminal domain FE003_02490 PF00380 Ribosomal protein S9/S16 FE003_02495 PF00572 Ribosomal protein L13 FE003_02500 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FE003_02505 PF00398 Ribosomal RNA adenine dimethylase FE003_02510 PF00149 Calcineurin-like phosphoesterase FE003_02530 PF16360 GTP-binding GTPase Middle Region FE003_02530 PF01926 50S ribosome-binding GTPase FE003_02530 PF13167 GTP-binding GTPase N-terminal FE003_02540 PF13091 PLD-like domain FE003_02545 PF10518 TAT (twin-arginine translocation) pathway signal sequence FE003_02545 PF00149 Calcineurin-like phosphoesterase FE003_02550 PF00691 OmpA family FE003_02550 PF01389 OmpA-like transmembrane domain FE003_02555 PF17152 Periplasmic sensor domain FE003_02555 PF00990 Diguanylate cyclase, GGDEF domain FE003_02590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FE003_02590 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_02600 PF04273 Putative phosphatase (DUF442) FE003_02600 PF00753 Metallo-beta-lactamase superfamily FE003_02605 PF00561 alpha/beta hydrolase fold FE003_02610 PF00085 Thioredoxin FE003_02615 PF03061 Thioesterase superfamily FE003_02625 PF04461 Protein of unknown function (DUF520) FE003_02635 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FE003_02635 PF01266 FAD dependent oxidoreductase FE003_02645 PF03795 YCII-related domain FE003_02650 PF04279 Intracellular septation protein A FE003_02655 PF02811 PHP domain FE003_02660 PF01062 Bestrophin, RFP-TM, chloride channel FE003_02665 PF04002 RadC-like JAB domain FE003_02670 PF02441 Flavoprotein FE003_02670 PF04127 DNA / pantothenate metabolism flavoprotein FE003_02675 PF07549 SecD/SecF GG Motif FE003_02675 PF02355 Protein export membrane protein FE003_02680 PF13721 SecD export protein N-terminal TM region FE003_02680 PF07549 SecD/SecF GG Motif FE003_02680 PF02355 Protein export membrane protein FE003_02685 PF02699 Preprotein translocase subunit FE003_02690 PF01702 Queuine tRNA-ribosyltransferase FE003_02705 PF02547 Queuosine biosynthesis protein FE003_02725 PF13936 Helix-turn-helix domain FE003_02725 PF00665 Integrase core domain FE003_02740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_02740 PF00512 His Kinase A (phospho-acceptor) domain FE003_02740 PF07689 KaiB domain FE003_02745 PF08335 GlnD PII-uridylyltransferase FE003_02745 PF03710 Glutamate-ammonia ligase adenylyltransferase FE003_02750 PF01063 Amino-transferase class IV FE003_02765 PF01522 Polysaccharide deacetylase FE003_02770 PF00535 Glycosyl transferase family 2 FE003_02775 PF00534 Glycosyl transferases group 1 FE003_02775 PF13439 Glycosyltransferase Family 4 FE003_02805 PF11380 Stealth protein CR2, conserved region 2 FE003_02805 PF17102 Stealth protein CR3, conserved region 3 FE003_02805 PF17101 Stealth protein CR1, conserved region 1 FE003_02810 PF02938 GAD domain FE003_02810 PF01336 OB-fold nucleic acid binding domain FE003_02810 PF00152 tRNA synthetases class II (D, K and N) FE003_02820 PF07715 TonB-dependent Receptor Plug Domain FE003_02820 PF00593 TonB dependent receptor FE003_02840 PF06146 Phosphate-starvation-inducible E FE003_02845 PF00043 Glutathione S-transferase, C-terminal domain FE003_02845 PF02798 Glutathione S-transferase, N-terminal domain FE003_02850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_02850 PF03466 LysR substrate binding domain FE003_02855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_02855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_02855 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_02855 PF12806 Acetyl-CoA dehydrogenase C-terminal like FE003_02860 PF12806 Acetyl-CoA dehydrogenase C-terminal like FE003_02860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_02860 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_02860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_02870 PF00672 HAMP domain FE003_02870 PF00512 His Kinase A (phospho-acceptor) domain FE003_02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_02875 PF00072 Response regulator receiver domain FE003_02875 PF00486 Transcriptional regulatory protein, C terminal FE003_02880 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FE003_02900 PF01923 Cobalamin adenosyltransferase FE003_02905 PF00593 TonB dependent receptor FE003_02905 PF07715 TonB-dependent Receptor Plug Domain FE003_02910 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FE003_02915 PF00291 Pyridoxal-phosphate dependent enzyme FE003_02940 PF00290 Tryptophan synthase alpha chain FE003_02945 PF01039 Carboxyl transferase domain FE003_02950 PF08245 Mur ligase middle domain FE003_02950 PF02875 Mur ligase family, glutamate ligase domain FE003_02965 PF00753 Metallo-beta-lactamase superfamily FE003_02970 PF00578 AhpC/TSA family FE003_02970 PF10417 C-terminal domain of 1-Cys peroxiredoxin FE003_02975 PF07516 SecA Wing and Scaffold domain FE003_02975 PF01043 SecA preprotein cross-linking domain FE003_02975 PF07517 SecA DEAD-like domain FE003_02975 PF02810 SEC-C motif FE003_02985 PF07690 Major Facilitator Superfamily FE003_02985 PF00083 Sugar (and other) transporter FE003_02990 PF03006 Haemolysin-III related FE003_03015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FE003_03015 PF00378 Enoyl-CoA hydratase/isomerase FE003_03015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FE003_03020 PF00108 Thiolase, N-terminal domain FE003_03020 PF02803 Thiolase, C-terminal domain FE003_03025 PF12833 Helix-turn-helix domain FE003_03025 PF02311 AraC-like ligand binding domain FE003_03030 PF02515 CoA-transferase family III FE003_03035 PF04966 Carbohydrate-selective porin, OprB family FE003_03040 PF01011 PQQ enzyme repeat FE003_03045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FE003_03045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FE003_03055 PF00893 Small Multidrug Resistance protein FE003_03065 PF02803 Thiolase, C-terminal domain FE003_03065 PF00108 Thiolase, N-terminal domain FE003_03075 PF00691 OmpA family FE003_03075 PF13505 Outer membrane protein beta-barrel domain FE003_03085 PF01139 tRNA-splicing ligase RtcB FE003_03090 PF00324 Amino acid permease FE003_03095 PF05175 Methyltransferase small domain FE003_03095 PF08468 Methyltransferase small domain N-terminal FE003_03100 PF00860 Permease family FE003_03110 PF01741 Large-conductance mechanosensitive channel, MscL FE003_03125 PF06827 Zinc finger found in FPG and IleRS FE003_03125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FE003_03125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FE003_03130 PF02245 Methylpurine-DNA glycosylase (MPG) FE003_03135 PF07715 TonB-dependent Receptor Plug Domain FE003_03135 PF00593 TonB dependent receptor FE003_03140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FE003_03145 PF03547 Membrane transport protein FE003_03155 PF10411 Disulfide bond isomerase protein N-terminus FE003_03155 PF13098 Thioredoxin-like domain FE003_03160 PF01571 Aminomethyltransferase folate-binding domain FE003_03170 PF04343 Protein of unknown function, DUF488 FE003_03175 PF03831 PhnA domain FE003_03175 PF08274 PhnA Zinc-Ribbon FE003_03180 PF07411 Domain of unknown function (DUF1508) FE003_03185 PF04073 Aminoacyl-tRNA editing domain FE003_03185 PF03129 Anticodon binding domain FE003_03185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FE003_03190 PF00873 AcrB/AcrD/AcrF family FE003_03205 PF00072 Response regulator receiver domain FE003_03210 PF00072 Response regulator receiver domain FE003_03215 PF01584 CheW-like domain FE003_03220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FE003_03220 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FE003_03225 PF00072 Response regulator receiver domain FE003_03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_03225 PF01584 CheW-like domain FE003_03225 PF01627 Hpt domain FE003_03235 PF07687 Peptidase dimerisation domain FE003_03235 PF01546 Peptidase family M20/M25/M40 FE003_03240 PF08085 Entericidin EcnA/B family FE003_03250 PF04304 Protein of unknown function (DUF454) FE003_03255 PF03734 L,D-transpeptidase catalytic domain FE003_03255 PF17969 L,D-transpeptidase C-terminal domain FE003_03295 PF00667 FAD binding domain FE003_03295 PF00258 Flavodoxin FE003_03295 PF00175 Oxidoreductase NAD-binding domain FE003_03305 PF12805 FUSC-like inner membrane protein yccS FE003_03310 PF07690 Major Facilitator Superfamily FE003_03315 PF00881 Nitroreductase family FE003_03330 PF01235 Sodium:alanine symporter family FE003_03335 PF01734 Patatin-like phospholipase FE003_03340 PF13291 ACT domain FE003_03340 PF00291 Pyridoxal-phosphate dependent enzyme FE003_03345 PF05992 SbmA/BacA-like family FE003_03375 PF02934 GatB/GatE catalytic domain FE003_03375 PF02637 GatB domain FE003_03380 PF01425 Amidase FE003_03385 PF02686 Glu-tRNAGln amidotransferase C subunit FE003_03395 PF04085 rod shape-determining protein MreC FE003_03400 PF04093 rod shape-determining protein MreD FE003_03405 PF02545 Maf-like protein FE003_03410 PF10150 Ribonuclease E/G family FE003_03410 PF00575 S1 RNA binding domain FE003_03420 PF06974 Protein of unknown function (DUF1298) FE003_03420 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FE003_03425 PF01507 Phosphoadenosine phosphosulfate reductase family FE003_03440 PF02525 Flavodoxin-like fold FE003_03460 PF02673 Bacitracin resistance protein BacA FE003_03465 PF12833 Helix-turn-helix domain FE003_03465 PF06719 AraC-type transcriptional regulator N-terminus FE003_03470 PF00109 Beta-ketoacyl synthase, N-terminal domain FE003_03470 PF09277 Erythronolide synthase, docking FE003_03470 PF08990 Erythronolide synthase docking FE003_03470 PF08240 Alcohol dehydrogenase GroES-like domain FE003_03470 PF08659 KR domain FE003_03470 PF16197 Ketoacyl-synthetase C-terminal extension FE003_03470 PF00698 Acyl transferase domain FE003_03470 PF02801 Beta-ketoacyl synthase, C-terminal domain FE003_03470 PF00550 Phosphopantetheine attachment site FE003_03470 PF14765 Polyketide synthase dehydratase FE003_03475 PF01965 DJ-1/PfpI family FE003_03485 PF00324 Amino acid permease FE003_03490 PF04303 PrpF protein FE003_03495 PF00348 Polyprenyl synthetase FE003_03500 PF04237 YjbR FE003_03505 PF01145 SPFH domain / Band 7 family FE003_03515 PF01734 Patatin-like phospholipase FE003_03535 PF08019 Phosphoethanolamine transferase EptA/EptB FE003_03535 PF00884 Sulfatase FE003_03540 PF00072 Response regulator receiver domain FE003_03540 PF00486 Transcriptional regulatory protein, C terminal FE003_03545 PF00512 His Kinase A (phospho-acceptor) domain FE003_03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_03545 PF08521 Two-component sensor kinase N-terminal FE003_03555 PF00909 Ammonium Transporter Family FE003_03565 PF03466 LysR substrate binding domain FE003_03565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_03585 PF08264 Anticodon-binding domain of tRNA FE003_03585 PF00133 tRNA synthetases class I (I, L, M and V) FE003_03585 PF10458 Valyl tRNA synthetase tRNA binding arm FE003_03605 PF01906 Putative heavy-metal-binding FE003_03610 PF01906 Putative heavy-metal-binding FE003_03615 PF02321 Outer membrane efflux protein FE003_03620 PF00873 AcrB/AcrD/AcrF family FE003_03625 PF00529 HlyD membrane-fusion protein of T1SS FE003_03625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FE003_03630 PF01569 PAP2 superfamily FE003_03640 PF00348 Polyprenyl synthetase FE003_03650 PF00829 Ribosomal prokaryotic L21 protein FE003_03655 PF01016 Ribosomal L27 protein FE003_03660 PF03548 Outer membrane lipoprotein carrier protein LolA FE003_03670 PF02403 Seryl-tRNA synthetase N-terminal domain FE003_03670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FE003_03675 PF10414 Sirohaem synthase dimerisation region FE003_03675 PF14824 Sirohaem biosynthesis protein central FE003_03675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FE003_03680 PF00588 SpoU rRNA Methylase family FE003_03685 PF01638 HxlR-like helix-turn-helix FE003_03690 PF03358 NADPH-dependent FMN reductase FE003_03695 PF13520 Amino acid permease FE003_03700 PF00465 Iron-containing alcohol dehydrogenase FE003_03710 PF03099 Biotin/lipoate A/B protein ligase family FE003_03715 PF04359 Protein of unknown function (DUF493) FE003_03720 PF04539 Sigma-70 region 3 FE003_03720 PF04542 Sigma-70 region 2 FE003_03720 PF04545 Sigma-70, region 4 FE003_03720 PF00140 Sigma-70 factor, region 1.2 FE003_03720 PF03979 Sigma-70 factor, region 1.1 FE003_03720 PF04546 Sigma-70, non-essential region FE003_03750 PF00285 Citrate synthase, C-terminal domain FE003_03755 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FE003_03760 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FE003_03765 PF00890 FAD binding domain FE003_03765 PF02910 Fumarate reductase flavoprotein C-term FE003_03770 PF13085 2Fe-2S iron-sulfur cluster binding domain FE003_03785 PF16078 2-oxoglutarate dehydrogenase N-terminus FE003_03785 PF00676 Dehydrogenase E1 component FE003_03785 PF16870 2-oxoglutarate dehydrogenase C-terminal FE003_03785 PF02779 Transketolase, pyrimidine binding domain FE003_03790 PF02817 e3 binding domain FE003_03790 PF00364 Biotin-requiring enzyme FE003_03790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FE003_03795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FE003_03795 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_03800 PF00549 CoA-ligase FE003_03800 PF08442 ATP-grasp domain FE003_03805 PF00549 CoA-ligase FE003_03805 PF02629 CoA binding domain FE003_03810 PF00579 tRNA synthetases class I (W and Y) FE003_03815 PF05661 Protein of unknown function (DUF808) FE003_03820 PF04228 Putative neutral zinc metallopeptidase FE003_03825 PF00999 Sodium/hydrogen exchanger family FE003_03870 PF09587 Bacterial capsule synthesis protein PGA_cap FE003_03880 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FE003_03885 PF00582 Universal stress protein family FE003_03890 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_03895 PF03449 Transcription elongation factor, N-terminal FE003_03895 PF01272 Transcription elongation factor, GreA/GreB, C-term FE003_03900 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FE003_03900 PF02142 MGS-like domain FE003_03900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FE003_03905 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FE003_03905 PF00117 Glutamine amidotransferase class-I FE003_03920 PF01985 CRS1 / YhbY (CRM) domain FE003_03925 PF01728 FtsJ-like methyltransferase FE003_03930 PF06480 FtsH Extracellular FE003_03930 PF00004 ATPase family associated with various cellular activities (AAA) FE003_03930 PF01434 Peptidase family M41 FE003_03930 PF17862 AAA+ lid domain FE003_03935 PF00809 Pterin binding enzyme FE003_03955 PF16655 PhoD-like phosphatase, N-terminal domain FE003_03955 PF09423 PhoD-like phosphatase FE003_03970 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FE003_03970 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FE003_03985 PF00083 Sugar (and other) transporter FE003_03990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FE003_03990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FE003_03995 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FE003_03995 PF01266 FAD dependent oxidoreductase FE003_04000 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FE003_04000 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FE003_04005 PF00781 Diacylglycerol kinase catalytic domain FE003_04010 PF00149 Calcineurin-like phosphoesterase FE003_04020 PF13936 Helix-turn-helix domain FE003_04020 PF00665 Integrase core domain FE003_04030 PF00166 Chaperonin 10 Kd subunit FE003_04035 PF00118 TCP-1/cpn60 chaperonin family FE003_04040 PF01219 Prokaryotic diacylglycerol kinase FE003_04045 PF00753 Metallo-beta-lactamase superfamily FE003_04050 PF03009 Glycerophosphoryl diester phosphodiesterase family FE003_04055 PF00873 AcrB/AcrD/AcrF family FE003_04065 PF01435 Peptidase family M48 FE003_04070 PF01464 Transglycosylase SLT domain FE003_04080 PF01171 PP-loop family FE003_04090 PF00497 Bacterial extracellular solute-binding proteins, family 3 FE003_04090 PF01464 Transglycosylase SLT domain FE003_04095 PF03449 Transcription elongation factor, N-terminal FE003_04095 PF01272 Transcription elongation factor, GreA/GreB, C-term FE003_04110 PF00975 Thioesterase domain FE003_04110 PF00550 Phosphopantetheine attachment site FE003_04110 PF00668 Condensation domain FE003_04110 PF13193 AMP-binding enzyme C-terminal domain FE003_04110 PF00501 AMP-binding enzyme FE003_04140 PF00881 Nitroreductase family FE003_04155 PF02595 Glycerate kinase family FE003_04160 PF00384 Molybdopterin oxidoreductase FE003_04165 PF02634 FdhD/NarQ family FE003_04170 PF06803 Protein of unknown function (DUF1232) FE003_04175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FE003_04175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FE003_04175 PF11890 Domain of unknown function (DUF3410) FE003_04180 PF00152 tRNA synthetases class II (D, K and N) FE003_04190 PF18073 Rubredoxin metal binding domain FE003_04195 PF00324 Amino acid permease FE003_04205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FE003_04205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FE003_04210 PF01678 Diaminopimelate epimerase FE003_04215 PF01810 LysE type translocator FE003_04220 PF02899 Phage integrase, N-terminal SAM-like domain FE003_04220 PF00589 Phage integrase family FE003_04225 PF01012 Electron transfer flavoprotein domain FE003_04230 PF01012 Electron transfer flavoprotein domain FE003_04230 PF00766 Electron transfer flavoprotein FAD-binding domain FE003_04235 PF00521 DNA gyrase/topoisomerase IV, subunit A FE003_04235 PF03989 DNA gyrase C-terminal domain, beta-propeller FE003_04250 PF00535 Glycosyl transferase family 2 FE003_04270 PF13533 Biotin-lipoyl like FE003_04280 PF00266 Aminotransferase class-V FE003_04290 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FE003_04300 PF02687 FtsX-like permease family FE003_04300 PF12704 MacB-like periplasmic core domain FE003_04305 PF00005 ABC transporter FE003_04310 PF13567 Domain of unknown function (DUF4131) FE003_04310 PF03772 Competence protein FE003_04310 PF00753 Metallo-beta-lactamase superfamily FE003_04320 PF01343 Peptidase family S49 FE003_04320 PF06965 Na+/H+ antiporter 1 FE003_04325 PF12697 Alpha/beta hydrolase family FE003_04330 PF00551 Formyl transferase FE003_04335 PF00586 AIR synthase related protein, N-terminal domain FE003_04335 PF02769 AIR synthase related protein, C-terminal domain FE003_04340 PF01594 AI-2E family transporter FE003_04345 PF08299 Bacterial dnaA protein helix-turn-helix FE003_04345 PF00308 Bacterial dnaA protein FE003_04345 PF11638 DnaA N-terminal domain FE003_04375 PF08032 RNA 2'-O ribose methyltransferase substrate binding FE003_04375 PF00588 SpoU rRNA Methylase family FE003_04380 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FE003_04390 PF00691 OmpA family FE003_04395 PF04052 TolB amino-terminal domain FE003_04395 PF07676 WD40-like Beta Propeller Repeat FE003_04405 PF02472 Biopolymer transport protein ExbD/TolR FE003_04410 PF01618 MotA/TolQ/ExbB proton channel family FE003_04415 PF03061 Thioesterase superfamily FE003_04420 PF01546 Peptidase family M20/M25/M40 FE003_04420 PF07687 Peptidase dimerisation domain FE003_04425 PF05496 Holliday junction DNA helicase RuvB P-loop domain FE003_04425 PF17864 RuvB AAA lid domain FE003_04425 PF05491 RuvB C-terminal winged helix domain FE003_04430 PF07499 RuvA, C-terminal domain FE003_04430 PF01330 RuvA N terminal domain FE003_04435 PF01966 HD domain FE003_04440 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FE003_04440 PF02769 AIR synthase related protein, C-terminal domain FE003_04440 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FE003_04445 PF07690 Major Facilitator Superfamily FE003_04450 PF01784 NIF3 (NGG1p interacting factor 3) FE003_04455 PF00378 Enoyl-CoA hydratase/isomerase FE003_04460 PF01467 Cytidylyltransferase-like FE003_04460 PF00293 NUDIX domain FE003_04470 PF00578 AhpC/TSA family FE003_04485 PF06508 Queuosine biosynthesis protein QueC FE003_04495 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FE003_04495 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_04495 PF14602 Hexapeptide repeat of succinyl-transferase FE003_04505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_04505 PF03466 LysR substrate binding domain FE003_04510 PF12857 TOBE-like domain FE003_04510 PF00005 ABC transporter FE003_04515 PF00528 Binding-protein-dependent transport system inner membrane component FE003_04520 PF00528 Binding-protein-dependent transport system inner membrane component FE003_04535 PF01063 Amino-transferase class IV FE003_04540 PF02618 YceG-like family FE003_04545 PF02223 Thymidylate kinase FE003_04555 PF00890 FAD binding domain FE003_04555 PF02910 Fumarate reductase flavoprotein C-term FE003_04560 PF13180 PDZ domain FE003_04570 PF03144 Elongation factor Tu domain 2 FE003_04570 PF00679 Elongation factor G C-terminus FE003_04570 PF00009 Elongation factor Tu GTP binding domain FE003_04570 PF06421 GTP-binding protein LepA C-terminus FE003_04575 PF10502 Signal peptidase, peptidase S26 FE003_04585 PF14622 Ribonuclease-III-like FE003_04585 PF00035 Double-stranded RNA binding motif FE003_04590 PF07650 KH domain FE003_04590 PF01926 50S ribosome-binding GTPase FE003_04600 PF11967 Recombination protein O N terminal FE003_04600 PF02565 Recombination protein O C terminal FE003_04605 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FE003_04610 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FE003_04615 PF00106 short chain dehydrogenase FE003_04655 PF00990 Diguanylate cyclase, GGDEF domain FE003_04655 PF17151 Periplasmic sensor domain FE003_04665 PF12344 Ultra-violet resistance protein B FE003_04665 PF00271 Helicase conserved C-terminal domain FE003_04665 PF17757 UvrB interaction domain FE003_04665 PF02151 UvrB/uvrC motif FE003_04665 PF04851 Type III restriction enzyme, res subunit FE003_04675 PF00892 EamA-like transporter family FE003_04680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FE003_04680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FE003_04695 PF01018 GTP1/OBG FE003_04695 PF01926 50S ribosome-binding GTPase FE003_04700 PF01472 PUA domain FE003_04700 PF00696 Amino acid kinase family FE003_04710 PF07759 Protein of unknown function (DUF1615) FE003_04715 PF01207 Dihydrouridine synthase (Dus) FE003_04720 PF03060 Nitronate monooxygenase FE003_04735 PF02350 UDP-N-acetylglucosamine 2-epimerase FE003_04765 PF00875 DNA photolyase FE003_04765 PF03441 FAD binding domain of DNA photolyase FE003_04770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FE003_04775 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_04780 PF07943 Penicillin-binding protein 5, C-terminal domain FE003_04780 PF00768 D-alanyl-D-alanine carboxypeptidase FE003_04790 PF03971 Monomeric isocitrate dehydrogenase FE003_04795 PF00849 RNA pseudouridylate synthase FE003_04800 PF00180 Isocitrate/isopropylmalate dehydrogenase FE003_04820 PF06779 Uncharacterised MFS-type transporter YbfB FE003_04825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_04825 PF03466 LysR substrate binding domain FE003_04835 PF02567 Phenazine biosynthesis-like protein FE003_04840 PF00675 Insulinase (Peptidase family M16) FE003_04840 PF05193 Peptidase M16 inactive domain FE003_04865 PF02581 Thiamine monophosphate synthase FE003_04870 PF00202 Aminotransferase class-III FE003_04880 PF00849 RNA pseudouridylate synthase FE003_04885 PF00271 Helicase conserved C-terminal domain FE003_04885 PF12137 RNA polymerase recycling family C-terminal FE003_04885 PF00176 SNF2 family N-terminal domain FE003_04885 PF18339 RapA N-terminal Tudor like domain 1 FE003_04885 PF18337 RapA N-terminal Tudor like domain FE003_04895 PF00440 Bacterial regulatory proteins, tetR family FE003_04900 PF00970 Oxidoreductase FAD-binding domain FE003_04900 PF00111 2Fe-2S iron-sulfur cluster binding domain FE003_04900 PF00175 Oxidoreductase NAD-binding domain FE003_04905 PF00487 Fatty acid desaturase FE003_04915 PF17754 MftR C-terminal domain FE003_04915 PF00440 Bacterial regulatory proteins, tetR family FE003_04925 PF00202 Aminotransferase class-III FE003_04930 PF00282 Pyridoxal-dependent decarboxylase conserved domain FE003_04935 PF00171 Aldehyde dehydrogenase family FE003_04940 PF01037 Lrp/AsnC ligand binding domain FE003_04945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FE003_04945 PF00205 Thiamine pyrophosphate enzyme, central domain FE003_04945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FE003_04950 PF00324 Amino acid permease FE003_04955 PF12849 PBP superfamily domain FE003_04960 PF00528 Binding-protein-dependent transport system inner membrane component FE003_04965 PF00528 Binding-protein-dependent transport system inner membrane component FE003_04970 PF00005 ABC transporter FE003_04975 PF01343 Peptidase family S49 FE003_04975 PF08496 Peptidase family S49 N-terminal FE003_04990 PF08328 Adenylosuccinate lyase C-terminal FE003_04990 PF00206 Lyase FE003_04995 PF04356 Protein of unknown function (DUF489) FE003_05005 PF13344 Haloacid dehalogenase-like hydrolase FE003_05005 PF00293 NUDIX domain FE003_05010 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_05015 PF00768 D-alanyl-D-alanine carboxypeptidase FE003_05015 PF07943 Penicillin-binding protein 5, C-terminal domain FE003_05030 PF01975 Survival protein SurE FE003_05035 PF01476 LysM domain FE003_05035 PF01551 Peptidase family M23 FE003_05040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_05040 PF03466 LysR substrate binding domain FE003_05045 PF13654 AAA domain FE003_05045 PF05362 Lon protease (S16) C-terminal proteolytic domain FE003_05050 PF07690 Major Facilitator Superfamily FE003_05055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FE003_05060 PF13593 SBF-like CPA transporter family (DUF4137) FE003_05065 PF01197 Ribosomal protein L31 FE003_05080 PF04055 Radical SAM superfamily FE003_05085 PF01132 Elongation factor P (EF-P) OB domain FE003_05085 PF09285 Elongation factor P, C-terminal FE003_05085 PF08207 Elongation factor P (EF-P) KOW-like domain FE003_05090 PF02554 Carbon starvation protein CstA FE003_05090 PF13722 5TM C-terminal transporter carbon starvation CstA FE003_05095 PF04328 Selenoprotein, putative FE003_05130 PF17853 GGDEF-like domain FE003_05130 PF06018 CodY GAF-like domain FE003_05130 PF13556 PucR C-terminal helix-turn-helix domain FE003_05145 PF00171 Aldehyde dehydrogenase family FE003_05150 PF00324 Amino acid permease FE003_05155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_05155 PF03466 LysR substrate binding domain FE003_05160 PF02028 BCCT, betaine/carnitine/choline family transporter FE003_05165 PF02028 BCCT, betaine/carnitine/choline family transporter FE003_05170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FE003_05170 PF00355 Rieske [2Fe-2S] domain FE003_05180 PF18113 Rubredoxin binding C-terminal domain FE003_05180 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_05185 PF01266 FAD dependent oxidoreductase FE003_05185 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FE003_05205 PF00892 EamA-like transporter family FE003_05215 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FE003_05220 PF00083 Sugar (and other) transporter FE003_05225 PF13378 Enolase C-terminal domain-like FE003_05225 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FE003_05230 PF00550 Phosphopantetheine attachment site FE003_05230 PF16197 Ketoacyl-synthetase C-terminal extension FE003_05230 PF02801 Beta-ketoacyl synthase, C-terminal domain FE003_05230 PF00109 Beta-ketoacyl synthase, N-terminal domain FE003_05230 PF08659 KR domain FE003_05230 PF14765 Polyketide synthase dehydratase FE003_05230 PF09277 Erythronolide synthase, docking FE003_05230 PF08240 Alcohol dehydrogenase GroES-like domain FE003_05230 PF00698 Acyl transferase domain FE003_05230 PF08990 Erythronolide synthase docking FE003_05235 PF00440 Bacterial regulatory proteins, tetR family FE003_05255 PF02678 Pirin FE003_05255 PF17954 Quercetinase C-terminal cupin domain FE003_05265 PF08348 YheO-like PAS domain FE003_05265 PF13309 HTH domain FE003_05275 PF13193 AMP-binding enzyme C-terminal domain FE003_05275 PF00668 Condensation domain FE003_05275 PF00550 Phosphopantetheine attachment site FE003_05275 PF00501 AMP-binding enzyme FE003_05280 PF00668 Condensation domain FE003_05280 PF13193 AMP-binding enzyme C-terminal domain FE003_05280 PF00501 AMP-binding enzyme FE003_05280 PF00550 Phosphopantetheine attachment site FE003_05280 PF00975 Thioesterase domain FE003_05285 PF01032 FecCD transport family FE003_05290 PF01032 FecCD transport family FE003_05295 PF00005 ABC transporter FE003_05300 PF01497 Periplasmic binding protein FE003_05305 PF07715 TonB-dependent Receptor Plug Domain FE003_05305 PF00593 TonB dependent receptor FE003_05310 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FE003_05315 PF00550 Phosphopantetheine attachment site FE003_05315 PF00668 Condensation domain FE003_05315 PF00501 AMP-binding enzyme FE003_05320 PF00501 AMP-binding enzyme FE003_05320 PF13193 AMP-binding enzyme C-terminal domain FE003_05325 PF00857 Isochorismatase family FE003_05325 PF00550 Phosphopantetheine attachment site FE003_05330 PF00282 Pyridoxal-dependent decarboxylase conserved domain FE003_05340 PF00005 ABC transporter FE003_05340 PF00664 ABC transporter transmembrane region FE003_05345 PF00664 ABC transporter transmembrane region FE003_05345 PF00005 ABC transporter FE003_05350 PF00975 Thioesterase domain FE003_05360 PF00425 chorismate binding enzyme FE003_05370 PF01208 Uroporphyrinogen decarboxylase (URO-D) FE003_05375 PF05675 Protein of unknown function (DUF817) FE003_05390 PF00144 Beta-lactamase FE003_05405 PF00111 2Fe-2S iron-sulfur cluster binding domain FE003_05405 PF01799 [2Fe-2S] binding domain FE003_05410 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FE003_05410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FE003_05425 PF00218 Indole-3-glycerol phosphate synthase FE003_05430 PF00591 Glycosyl transferase family, a/b domain FE003_05430 PF02885 Glycosyl transferase family, helical bundle domain FE003_05435 PF07715 TonB-dependent Receptor Plug Domain FE003_05435 PF00593 TonB dependent receptor FE003_05440 PF01433 Peptidase family M1 domain FE003_05440 PF11838 ERAP1-like C-terminal domain FE003_05445 PF00117 Glutamine amidotransferase class-I FE003_05830 PF13356 Arm DNA-binding domain FE003_05830 PF00589 Phage integrase family FE003_05840 PF00854 POT family FE003_05850 PF04345 Chorismate lyase FE003_05855 PF01040 UbiA prenyltransferase family FE003_05890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FE003_05890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FE003_05895 PF01784 NIF3 (NGG1p interacting factor 3) FE003_05900 PF13180 PDZ domain FE003_05905 PF01743 Poly A polymerase head domain FE003_05905 PF12627 Probable RNA and SrmB- binding site of polymerase A FE003_05910 PF01515 Phosphate acetyl/butaryl transferase FE003_05910 PF03949 Malic enzyme, NAD binding domain FE003_05910 PF00390 Malic enzyme, N-terminal domain FE003_05915 PF03707 Bacterial signalling protein N terminal repeat FE003_05915 PF00990 Diguanylate cyclase, GGDEF domain FE003_05915 PF00563 EAL domain FE003_05920 PF04452 RNA methyltransferase FE003_05925 PF02219 Methylenetetrahydrofolate reductase FE003_05930 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FE003_05930 PF05221 S-adenosyl-L-homocysteine hydrolase FE003_05945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_05945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_05945 PF09317 Domain of unknown function (DUF1974) FE003_05950 PF04055 Radical SAM superfamily FE003_05955 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_05955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FE003_05965 PF07690 Major Facilitator Superfamily FE003_05975 PF00557 Metallopeptidase family M24 FE003_05980 PF00318 Ribosomal protein S2 FE003_05985 PF00889 Elongation factor TS FE003_06025 PF05036 Sporulation related domain FE003_06025 PF03330 Lytic transglycolase FE003_06030 PF13406 Transglycosylase SLT domain FE003_06035 PF01098 Cell cycle protein FE003_06045 PF14489 QueF-like protein FE003_06045 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FE003_06050 PF01061 ABC-2 type transporter FE003_06055 PF00005 ABC transporter FE003_06085 PF00464 Serine hydroxymethyltransferase FE003_06090 PF02321 Outer membrane efflux protein FE003_06095 PF00873 AcrB/AcrD/AcrF family FE003_06100 PF13533 Biotin-lipoyl like FE003_06105 PF03466 LysR substrate binding domain FE003_06105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_06110 PF00497 Bacterial extracellular solute-binding proteins, family 3 FE003_06115 PF00528 Binding-protein-dependent transport system inner membrane component FE003_06120 PF00528 Binding-protein-dependent transport system inner membrane component FE003_06125 PF00005 ABC transporter FE003_06130 PF00893 Small Multidrug Resistance protein FE003_06135 PF00037 4Fe-4S binding domain FE003_06145 PF00392 Bacterial regulatory proteins, gntR family FE003_06145 PF00155 Aminotransferase class I and II FE003_06150 PF02567 Phenazine biosynthesis-like protein FE003_06155 PF00970 Oxidoreductase FAD-binding domain FE003_06155 PF00175 Oxidoreductase NAD-binding domain FE003_06160 PF01980 tRNA-methyltransferase O FE003_06160 PF18389 TrmO C-terminal domain FE003_06170 PF00437 Type II/IV secretion system protein FE003_06180 PF00486 Transcriptional regulatory protein, C terminal FE003_06180 PF00072 Response regulator receiver domain FE003_06185 PF08521 Two-component sensor kinase N-terminal FE003_06185 PF00512 His Kinase A (phospho-acceptor) domain FE003_06185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_06195 PF00293 NUDIX domain FE003_06205 PF14814 Bifunctional transglycosylase second domain FE003_06205 PF00912 Transglycosylase FE003_06205 PF00905 Penicillin binding protein transpeptidase domain FE003_06210 PF01513 ATP-NAD kinase FE003_06215 PF07023 Protein of unknown function (DUF1315) FE003_06220 PF00591 Glycosyl transferase family, a/b domain FE003_06220 PF02885 Glycosyl transferase family, helical bundle domain FE003_06230 PF00375 Sodium:dicarboxylate symporter family FE003_06235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_06235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_06235 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_06240 PF00756 Putative esterase FE003_06245 PF01842 ACT domain FE003_06245 PF01817 Chorismate mutase type II FE003_06245 PF00800 Prephenate dehydratase FE003_06250 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FE003_06260 PF01546 Peptidase family M20/M25/M40 FE003_06260 PF07687 Peptidase dimerisation domain FE003_06265 PF12706 Beta-lactamase superfamily domain FE003_06275 PF03883 Peroxide stress protein YaaA FE003_06285 PF05690 Thiazole biosynthesis protein ThiG FE003_06295 PF04241 Protein of unknown function (DUF423) FE003_06300 PF04545 Sigma-70, region 4 FE003_06300 PF04542 Sigma-70 region 2 FE003_06300 PF00140 Sigma-70 factor, region 1.2 FE003_06310 PF00313 'Cold-shock' DNA-binding domain FE003_06315 PF00271 Helicase conserved C-terminal domain FE003_06315 PF00270 DEAD/DEAH box helicase FE003_06325 PF00881 Nitroreductase family FE003_06330 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FE003_06330 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FE003_06350 PF01180 Dihydroorotate dehydrogenase FE003_06355 PF02674 Colicin V production protein FE003_06360 PF00156 Phosphoribosyl transferase domain FE003_06375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FE003_06375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FE003_06380 PF01435 Peptidase family M48 FE003_06385 PF09424 Yqey-like protein FE003_06390 PF01165 Ribosomal protein S21 FE003_06395 PF00814 Glycoprotease family FE003_06415 PF00069 Protein kinase domain FE003_06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_06440 PF03466 LysR substrate binding domain FE003_06445 PF00202 Aminotransferase class-III FE003_06450 PF00171 Aldehyde dehydrogenase family FE003_06455 PF00324 Amino acid permease FE003_06485 PF04076 Bacterial OB fold (BOF) protein FE003_06515 PF00561 alpha/beta hydrolase fold FE003_06520 PF03616 Sodium/glutamate symporter FE003_06530 PF07729 FCD domain FE003_06530 PF00392 Bacterial regulatory proteins, gntR family FE003_06580 PF00083 Sugar (and other) transporter FE003_06580 PF08946 Osmosensory transporter coiled coil FE003_06615 PF00155 Aminotransferase class I and II FE003_06620 PF02080 TrkA-C domain FE003_06620 PF06826 Predicted Permease Membrane Region FE003_06630 PF04403 Paraquat-inducible protein A FE003_06635 PF02470 MlaD protein FE003_06645 PF01177 Asp/Glu/Hydantoin racemase FE003_06650 PF00892 EamA-like transporter family FE003_06655 PF07995 Glucose / Sorbosone dehydrogenase FE003_06675 PF00375 Sodium:dicarboxylate symporter family FE003_06685 PF16123 Hydroxyacylglutathione hydrolase C-terminus FE003_06685 PF00753 Metallo-beta-lactamase superfamily FE003_06690 PF00528 Binding-protein-dependent transport system inner membrane component FE003_06695 PF09383 NIL domain FE003_06695 PF00005 ABC transporter FE003_06700 PF03180 NLPA lipoprotein FE003_06705 PF02843 Phosphoribosylglycinamide synthetase, C domain FE003_06705 PF02844 Phosphoribosylglycinamide synthetase, N domain FE003_06705 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FE003_06710 PF01808 AICARFT/IMPCHase bienzyme FE003_06710 PF02142 MGS-like domain FE003_06715 PF02954 Bacterial regulatory protein, Fis family FE003_06735 PF01134 Glucose inhibited division protein A FE003_06735 PF13932 GidA associated domain FE003_06745 PF14403 Circularly permuted ATP-grasp type 2 FE003_06755 PF08379 Bacterial transglutaminase-like N-terminal region FE003_06755 PF01841 Transglutaminase-like superfamily FE003_06765 PF00842 Alanine racemase, C-terminal domain FE003_06765 PF01168 Alanine racemase, N-terminal domain FE003_06770 PF00772 DnaB-like helicase N terminal domain FE003_06770 PF03796 DnaB-like helicase C terminal domain FE003_06775 PF03948 Ribosomal protein L9, C-terminal domain FE003_06775 PF01281 Ribosomal protein L9, N-terminal domain FE003_06780 PF01084 Ribosomal protein S18 FE003_06785 PF01250 Ribosomal protein S6 FE003_06790 PF01040 UbiA prenyltransferase family FE003_06795 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FE003_06800 PF00510 Cytochrome c oxidase subunit III FE003_06805 PF00115 Cytochrome C and Quinol oxidase polypeptide I FE003_06810 PF06481 COX Aromatic Rich Motif FE003_06810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FE003_06820 PF00391 PEP-utilising enzyme, mobile domain FE003_06820 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FE003_06820 PF02896 PEP-utilising enzyme, TIM barrel domain FE003_06825 PF03618 Kinase/pyrophosphorylase FE003_06835 PF01522 Polysaccharide deacetylase FE003_06835 PF14883 Hypothetical glycosyl hydrolase family 13 FE003_06840 PF00535 Glycosyl transferase family 2 FE003_06845 PF13994 PgaD-like protein FE003_06855 PF00296 Luciferase-like monooxygenase FE003_06875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_06875 PF03466 LysR substrate binding domain FE003_06885 PF00472 RF-1 domain FE003_06885 PF03462 PCRF domain FE003_06890 PF13847 Methyltransferase domain FE003_06890 PF17827 PrmC N-terminal domain FE003_06895 PF00528 Binding-protein-dependent transport system inner membrane component FE003_06900 PF09084 NMT1/THI5 like FE003_06905 PF12833 Helix-turn-helix domain FE003_06910 PF00106 short chain dehydrogenase FE003_06915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_06915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_06915 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_06920 PF00501 AMP-binding enzyme FE003_06920 PF13193 AMP-binding enzyme C-terminal domain FE003_06925 PF01613 Flavin reductase like domain FE003_06930 PF00899 ThiF family FE003_06935 PF03109 ABC1 family FE003_06950 PF03814 Potassium-transporting ATPase A subunit FE003_06960 PF02669 K+-transporting ATPase, c chain FE003_06965 PF13493 Domain of unknown function (DUF4118) FE003_06965 PF00512 His Kinase A (phospho-acceptor) domain FE003_06965 PF02702 Osmosensitive K+ channel His kinase sensor domain FE003_06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_06970 PF00486 Transcriptional regulatory protein, C terminal FE003_06970 PF00072 Response regulator receiver domain FE003_06975 PF00120 Glutamine synthetase, catalytic domain FE003_06985 PF03232 Ubiquinone biosynthesis protein COQ7 FE003_06990 PF07690 Major Facilitator Superfamily FE003_06995 PF01103 Surface antigen FE003_06995 PF07244 Surface antigen variable number repeat FE003_06995 PF17243 POTRA domain TamA domain 1 FE003_07015 PF00330 Aconitase family (aconitate hydratase) FE003_07015 PF06434 Aconitate hydratase 2 N-terminus FE003_07015 PF11791 Aconitate B N-terminal domain FE003_07025 PF00520 Ion transport protein FE003_07025 PF00027 Cyclic nucleotide-binding domain FE003_07030 PF07690 Major Facilitator Superfamily FE003_07045 PF03466 LysR substrate binding domain FE003_07045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_07050 PF04284 Protein of unknown function (DUF441) FE003_07060 PF00849 RNA pseudouridylate synthase FE003_07060 PF01479 S4 domain FE003_07075 PF00849 RNA pseudouridylate synthase FE003_07075 PF01479 S4 domain FE003_07080 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FE003_07085 PF01119 DNA mismatch repair protein, C-terminal domain FE003_07085 PF08676 MutL C terminal dimerisation domain FE003_07095 PF17209 Hfq protein FE003_07105 PF00881 Nitroreductase family FE003_07115 PF00149 Calcineurin-like phosphoesterase FE003_07120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FE003_07125 PF00749 tRNA synthetases class I (E and Q), catalytic domain FE003_07125 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FE003_07130 PF00958 GMP synthase C terminal domain FE003_07130 PF02540 NAD synthase FE003_07130 PF00117 Glutamine amidotransferase class-I FE003_07135 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FE003_07140 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FE003_07145 PF13520 Amino acid permease FE003_07150 PF00171 Aldehyde dehydrogenase family FE003_07165 PF00465 Iron-containing alcohol dehydrogenase FE003_07170 PF14493 Helix-turn-helix domain FE003_07170 PF05970 PIF1-like helicase FE003_07180 PF06445 GyrI-like small molecule binding domain FE003_07185 PF02110 Hydroxyethylthiazole kinase family FE003_07200 PF01433 Peptidase family M1 domain FE003_07200 PF11940 Domain of unknown function (DUF3458) Ig-like fold FE003_07200 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FE003_07210 PF00106 short chain dehydrogenase FE003_07220 PF01817 Chorismate mutase type II FE003_07225 PF01037 Lrp/AsnC ligand binding domain FE003_07240 PF00440 Bacterial regulatory proteins, tetR family FE003_07245 PF00593 TonB dependent receptor FE003_07245 PF07715 TonB-dependent Receptor Plug Domain FE003_07250 PF00924 Mechanosensitive ion channel FE003_07280 PF07715 TonB-dependent Receptor Plug Domain FE003_07280 PF00593 TonB dependent receptor FE003_07300 PF12848 ABC transporter FE003_07300 PF00005 ABC transporter FE003_07305 PF00582 Universal stress protein family FE003_07320 PF00689 Cation transporting ATPase, C-terminus FE003_07320 PF00690 Cation transporter/ATPase, N-terminus FE003_07325 PF02308 MgtC family FE003_07330 PF03594 Benzoate membrane transport protein FE003_07335 PF01037 Lrp/AsnC ligand binding domain FE003_07340 PF01810 LysE type translocator FE003_07350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_07350 PF03466 LysR substrate binding domain FE003_07360 PF02803 Thiolase, C-terminal domain FE003_07360 PF00108 Thiolase, N-terminal domain FE003_07385 PF07690 Major Facilitator Superfamily FE003_07390 PF12169 DNA polymerase III subunits gamma and tau domain III FE003_07390 PF12170 DNA polymerase III tau subunit V interacting with alpha FE003_07390 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FE003_07395 PF04185 Phosphoesterase family FE003_07395 PF05506 Domain of unknown function (DUF756) FE003_07400 PF03061 Thioesterase superfamily FE003_07405 PF00465 Iron-containing alcohol dehydrogenase FE003_07415 PF01451 Low molecular weight phosphotyrosine protein phosphatase FE003_07420 PF01565 FAD binding domain FE003_07420 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FE003_07435 PF01645 Conserved region in glutamate synthase FE003_07775 PF12832 MFS_1 like family FE003_07785 PF02785 Biotin carboxylase C-terminal domain FE003_07785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FE003_07785 PF00289 Biotin carboxylase, N-terminal domain FE003_07790 PF00364 Biotin-requiring enzyme FE003_07795 PF01220 Dehydroquinase class II FE003_07800 PF00817 impB/mucB/samB family FE003_07800 PF13438 Domain of unknown function (DUF4113) FE003_07800 PF11799 impB/mucB/samB family C-terminal domain FE003_07810 PF00005 ABC transporter FE003_07815 PF00486 Transcriptional regulatory protein, C terminal FE003_07815 PF00072 Response regulator receiver domain FE003_07825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FE003_07825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FE003_07825 PF04324 BFD-like [2Fe-2S] binding domain FE003_07825 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_07825 PF13806 Rieske-like [2Fe-2S] domain FE003_07825 PF18267 Rubredoxin NAD+ reductase C-terminal domain FE003_07830 PF04324 BFD-like [2Fe-2S] binding domain FE003_07830 PF18267 Rubredoxin NAD+ reductase C-terminal domain FE003_07830 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_07830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FE003_07830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FE003_07835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FE003_07835 PF01568 Molydopterin dinucleotide binding domain FE003_07835 PF00384 Molybdopterin oxidoreductase FE003_07835 PF04324 BFD-like [2Fe-2S] binding domain FE003_07840 PF12804 MobA-like NTP transferase domain FE003_07845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FE003_07845 PF00384 Molybdopterin oxidoreductase FE003_07845 PF01568 Molydopterin dinucleotide binding domain FE003_07850 PF06463 Molybdenum Cofactor Synthesis C FE003_07850 PF04055 Radical SAM superfamily FE003_07860 PF02391 MoaE protein FE003_07865 PF00994 Probable molybdopterin binding domain FE003_07865 PF01967 MoaC family FE003_07870 PF03453 MoeA N-terminal region (domain I and II) FE003_07870 PF00994 Probable molybdopterin binding domain FE003_07870 PF03454 MoeA C-terminal region (domain IV) FE003_07875 PF01638 HxlR-like helix-turn-helix FE003_07880 PF00155 Aminotransferase class I and II FE003_07880 PF00392 Bacterial regulatory proteins, gntR family FE003_07885 PF00892 EamA-like transporter family FE003_07905 PF02635 DsrE/DsrF-like family FE003_07910 PF16363 GDP-mannose 4,6 dehydratase FE003_07915 PF00206 Lyase FE003_07915 PF10415 Fumarase C C-terminus FE003_07940 PF01266 FAD dependent oxidoreductase FE003_07950 PF02542 YgbB family FE003_07960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FE003_07960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FE003_07975 PF00440 Bacterial regulatory proteins, tetR family FE003_07980 PF00072 Response regulator receiver domain FE003_07980 PF02954 Bacterial regulatory protein, Fis family FE003_07980 PF00158 Sigma-54 interaction domain FE003_07985 PF00512 His Kinase A (phospho-acceptor) domain FE003_07985 PF00989 PAS fold FE003_07985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_07995 PF00919 Uncharacterized protein family UPF0004 FE003_07995 PF04055 Radical SAM superfamily FE003_07995 PF18693 TRAM domain FE003_08000 PF00696 Amino acid kinase family FE003_08005 PF01765 Ribosome recycling factor FE003_08010 PF01255 Putative undecaprenyl diphosphate synthase FE003_08020 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FE003_08020 PF13288 DXP reductoisomerase C-terminal domain FE003_08020 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FE003_08025 PF02163 Peptidase family M50 FE003_08025 PF13180 PDZ domain FE003_08025 PF17820 PDZ domain FE003_08030 PF01103 Surface antigen FE003_08030 PF07244 Surface antigen variable number repeat FE003_08040 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FE003_08040 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_08045 PF07977 FabA-like domain FE003_08050 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_08050 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FE003_08065 PF02631 RecX family FE003_08070 PF00154 recA bacterial DNA recombination protein FE003_08075 PF01479 S4 domain FE003_08080 PF13419 Haloacid dehalogenase-like hydrolase FE003_08105 PF01037 Lrp/AsnC ligand binding domain FE003_08110 PF00266 Aminotransferase class-V FE003_08115 PF00324 Amino acid permease FE003_08125 PF05922 Peptidase inhibitor I9 FE003_08125 PF00082 Subtilase family FE003_08130 PF01740 STAS domain FE003_08130 PF00916 Sulfate permease family FE003_08135 PF02586 SOS response associated peptidase (SRAP) FE003_08140 PF07995 Glucose / Sorbosone dehydrogenase FE003_08150 PF00563 EAL domain FE003_08150 PF00990 Diguanylate cyclase, GGDEF domain FE003_08150 PF03707 Bacterial signalling protein N terminal repeat FE003_08175 PF02378 Phosphotransferase system, EIIC FE003_08175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FE003_08180 PF00294 pfkB family carbohydrate kinase FE003_08185 PF05524 PEP-utilising enzyme, N-terminal FE003_08185 PF00391 PEP-utilising enzyme, mobile domain FE003_08185 PF02896 PEP-utilising enzyme, TIM barrel domain FE003_08185 PF00381 PTS HPr component phosphorylation site FE003_08185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FE003_08210 PF05525 Branched-chain amino acid transport protein FE003_08215 PF00557 Metallopeptidase family M24 FE003_08220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_08220 PF03466 LysR substrate binding domain FE003_08230 PF00462 Glutaredoxin FE003_08235 PF00202 Aminotransferase class-III FE003_08240 PF00478 IMP dehydrogenase / GMP reductase domain FE003_08240 PF00571 CBS domain FE003_08265 PF02881 SRP54-type protein, helical bundle domain FE003_08265 PF00448 SRP54-type protein, GTPase domain FE003_08275 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FE003_08290 PF08173 Membrane bound YbgT-like protein FE003_08295 PF02322 Cytochrome bd terminal oxidase subunit II FE003_08300 PF01654 Cytochrome bd terminal oxidase subunit I FE003_08315 PF07290 Protein of unknown function (DUF1449) FE003_08325 PF00294 pfkB family carbohydrate kinase FE003_08330 PF00593 TonB dependent receptor FE003_08330 PF07715 TonB-dependent Receptor Plug Domain FE003_08335 PF05193 Peptidase M16 inactive domain FE003_08335 PF00675 Insulinase (Peptidase family M16) FE003_08335 PF08367 Peptidase M16C associated FE003_08340 PF02253 Phospholipase A1 FE003_08345 PF02386 Cation transport protein FE003_08350 PF02254 TrkA-N domain FE003_08350 PF02080 TrkA-C domain FE003_08355 PF00291 Pyridoxal-phosphate dependent enzyme FE003_08355 PF00585 C-terminal regulatory domain of Threonine dehydratase FE003_08360 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FE003_08375 PF01118 Semialdehyde dehydrogenase, NAD binding domain FE003_08375 PF02774 Semialdehyde dehydrogenase, dimerisation domain FE003_08385 PF02617 ATP-dependent Clp protease adaptor protein ClpS FE003_08390 PF00004 ATPase family associated with various cellular activities (AAA) FE003_08390 PF07724 AAA domain (Cdc48 subfamily) FE003_08390 PF17871 AAA lid domain FE003_08390 PF02861 Clp amino terminal domain, pathogenicity island component FE003_08390 PF10431 C-terminal, D2-small domain, of ClpB protein FE003_08395 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FE003_08400 PF00793 DAHP synthetase I family FE003_08415 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_08415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FE003_08445 PF06418 CTP synthase N-terminus FE003_08445 PF00117 Glutamine amidotransferase class-I FE003_08450 PF00793 DAHP synthetase I family FE003_08455 PF00113 Enolase, C-terminal TIM barrel domain FE003_08455 PF03952 Enolase, N-terminal domain FE003_08460 PF04239 Protein of unknown function (DUF421) FE003_08465 PF04977 Septum formation initiator FE003_08470 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FE003_08475 PF00665 Integrase core domain FE003_08475 PF13936 Helix-turn-helix domain FE003_08480 PF01144 Coenzyme A transferase FE003_08485 PF01144 Coenzyme A transferase FE003_08490 PF00108 Thiolase, N-terminal domain FE003_08490 PF02803 Thiolase, C-terminal domain FE003_08495 PF00206 Lyase FE003_08495 PF10397 Adenylosuccinate lyase C-terminus FE003_08500 PF00561 alpha/beta hydrolase fold FE003_08505 PF07690 Major Facilitator Superfamily FE003_08510 PF02627 Carboxymuconolactone decarboxylase family FE003_08515 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FE003_08515 PF00775 Dioxygenase FE003_08520 PF00775 Dioxygenase FE003_08525 PF01487 Type I 3-dehydroquinase FE003_08530 PF05048 Periplasmic copper-binding protein (NosD) FE003_08535 PF04966 Carbohydrate-selective porin, OprB family FE003_08540 PF13360 PQQ-like domain FE003_08540 PF01011 PQQ enzyme repeat FE003_08550 PF04143 Sulphur transport FE003_08560 PF00753 Metallo-beta-lactamase superfamily FE003_08565 PF09339 IclR helix-turn-helix domain FE003_08565 PF01614 Bacterial transcriptional regulator FE003_08570 PF03466 LysR substrate binding domain FE003_08570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_08575 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_08575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_08575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_08590 PF00106 short chain dehydrogenase FE003_08600 PF07690 Major Facilitator Superfamily FE003_08610 PF01425 Amidase FE003_08615 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FE003_08630 PF00355 Rieske [2Fe-2S] domain FE003_08630 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FE003_08645 PF00175 Oxidoreductase NAD-binding domain FE003_08645 PF00111 2Fe-2S iron-sulfur cluster binding domain FE003_08650 PF01613 Flavin reductase like domain FE003_08655 PF02311 AraC-like ligand binding domain FE003_08655 PF12833 Helix-turn-helix domain FE003_08660 PF02727 Copper amine oxidase, N2 domain FE003_08660 PF02728 Copper amine oxidase, N3 domain FE003_08660 PF01179 Copper amine oxidase, enzyme domain FE003_08660 PF07833 Copper amine oxidase N-terminal domain FE003_08670 PF00171 Aldehyde dehydrogenase family FE003_08675 PF01804 Penicillin amidase FE003_08680 PF12146 Serine aminopeptidase, S33 FE003_08685 PF02803 Thiolase, C-terminal domain FE003_08685 PF00108 Thiolase, N-terminal domain FE003_08690 PF01144 Coenzyme A transferase FE003_08695 PF01144 Coenzyme A transferase FE003_08700 PF04444 Catechol dioxygenase N terminus FE003_08700 PF00775 Dioxygenase FE003_08705 PF02426 Muconolactone delta-isomerase FE003_08710 PF13378 Enolase C-terminal domain-like FE003_08710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FE003_08715 PF03466 LysR substrate binding domain FE003_08715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_08725 PF00392 Bacterial regulatory proteins, gntR family FE003_08725 PF07729 FCD domain FE003_08730 PF00920 Dehydratase family FE003_08735 PF07690 Major Facilitator Superfamily FE003_08745 PF00171 Aldehyde dehydrogenase family FE003_08765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_08765 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_08765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_08775 PF02954 Bacterial regulatory protein, Fis family FE003_08775 PF06506 Propionate catabolism activator FE003_08775 PF00158 Sigma-54 interaction domain FE003_08780 PF13193 AMP-binding enzyme C-terminal domain FE003_08780 PF00501 AMP-binding enzyme FE003_08785 PF04341 Protein of unknown function, DUF485 FE003_08790 PF00474 Sodium:solute symporter family FE003_08795 PF08240 Alcohol dehydrogenase GroES-like domain FE003_08795 PF00107 Zinc-binding dehydrogenase FE003_08800 PF00171 Aldehyde dehydrogenase family FE003_08810 PF00561 alpha/beta hydrolase fold FE003_08815 PF06628 Catalase-related immune-responsive FE003_08815 PF00199 Catalase FE003_08835 PF07859 alpha/beta hydrolase fold FE003_08840 PF01047 MarR family FE003_08845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FE003_08845 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_08850 PF00106 short chain dehydrogenase FE003_08865 PF01872 RibD C-terminal domain FE003_08870 PF00376 MerR family regulatory protein FE003_08870 PF09278 MerR, DNA binding FE003_08880 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_08890 PF12706 Beta-lactamase superfamily domain FE003_08895 PF00440 Bacterial regulatory proteins, tetR family FE003_08895 PF08359 YsiA-like protein, C-terminal region FE003_08905 PF00857 Isochorismatase family FE003_08910 PF03466 LysR substrate binding domain FE003_08910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_08915 PF07995 Glucose / Sorbosone dehydrogenase FE003_08920 PF00999 Sodium/hydrogen exchanger family FE003_08920 PF02254 TrkA-N domain FE003_08930 PF07687 Peptidase dimerisation domain FE003_08930 PF01546 Peptidase family M20/M25/M40 FE003_08945 PF08479 POTRA domain, ShlB-type FE003_08945 PF17287 POTRA domain FE003_08945 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FE003_08950 PF13332 Hemagglutinin repeat FE003_08950 PF05860 haemagglutination activity domain FE003_08950 PF04829 Pre-toxin domain with VENN motif FE003_08950 PF13018 Extended Signal Peptide of Type V secretion system FE003_08965 PF07690 Major Facilitator Superfamily FE003_08970 PF04909 Amidohydrolase FE003_08985 PF08450 SMP-30/Gluconolactonase/LRE-like region FE003_08995 PF03466 LysR substrate binding domain FE003_08995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_09015 PF07690 Major Facilitator Superfamily FE003_09020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FE003_09020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FE003_09020 PF01842 ACT domain FE003_09025 PF03737 Aldolase/RraA FE003_09045 PF00529 HlyD membrane-fusion protein of T1SS FE003_09045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FE003_09060 PF00171 Aldehyde dehydrogenase family FE003_09065 PF00920 Dehydratase family FE003_09075 PF03466 LysR substrate binding domain FE003_09075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_09080 PF01370 NAD dependent epimerase/dehydratase family FE003_09085 PF07690 Major Facilitator Superfamily FE003_09090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FE003_09090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FE003_09095 PF12833 Helix-turn-helix domain FE003_09095 PF06719 AraC-type transcriptional regulator N-terminus FE003_09110 PF08240 Alcohol dehydrogenase GroES-like domain FE003_09110 PF00107 Zinc-binding dehydrogenase FE003_09125 PF00005 ABC transporter FE003_09145 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FE003_09145 PF14572 Phosphoribosyl synthetase-associated domain FE003_09150 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FE003_09225 PF00196 Bacterial regulatory proteins, luxR family FE003_09230 PF01425 Amidase FE003_09235 PF13533 Biotin-lipoyl like FE003_09240 PF07690 Major Facilitator Superfamily FE003_09265 PF01975 Survival protein SurE FE003_09275 PF13291 ACT domain FE003_09275 PF04607 Region found in RelA / SpoT proteins FE003_09275 PF02824 TGS domain FE003_09330 PF12146 Serine aminopeptidase, S33 FE003_09335 PF12833 Helix-turn-helix domain FE003_09335 PF02311 AraC-like ligand binding domain FE003_09345 PF00512 His Kinase A (phospho-acceptor) domain FE003_09345 PF16527 Two-component sensor protein CpxA, periplasmic domain FE003_09345 PF00672 HAMP domain FE003_09345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_09350 PF00486 Transcriptional regulatory protein, C terminal FE003_09350 PF00072 Response regulator receiver domain FE003_09355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FE003_09355 PF00529 HlyD membrane-fusion protein of T1SS FE003_09360 PF00873 AcrB/AcrD/AcrF family FE003_09365 PF02321 Outer membrane efflux protein FE003_09370 PF12146 Serine aminopeptidase, S33 FE003_09375 PF00743 Flavin-binding monooxygenase-like FE003_09380 PF01593 Flavin containing amine oxidoreductase FE003_09395 PF01266 FAD dependent oxidoreductase FE003_09415 PF16970 Type-1 fimbrial protein, A FE003_09425 PF02753 Pili assembly chaperone PapD, C-terminal domain FE003_09425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FE003_09430 PF13954 PapC N-terminal domain FE003_09430 PF13953 PapC C-terminal domain FE003_09430 PF00577 Outer membrane usher protein FE003_09435 PF00419 Fimbrial protein FE003_09445 PF00107 Zinc-binding dehydrogenase FE003_09445 PF08240 Alcohol dehydrogenase GroES-like domain FE003_09455 PF00199 Catalase FE003_09470 PF13091 PLD-like domain FE003_09490 PF01244 Membrane dipeptidase (Peptidase family M19) FE003_09495 PF04055 Radical SAM superfamily FE003_09495 PF13186 Iron-sulfur cluster-binding domain FE003_09500 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FE003_09505 PF03070 TENA/THI-4/PQQC family FE003_09510 PF12706 Beta-lactamase superfamily domain FE003_09515 PF08042 PqqA family FE003_09520 PF13089 Polyphosphate kinase N-terminal domain FE003_09520 PF17941 Polyphosphate kinase C-terminal domain 1 FE003_09520 PF02503 Polyphosphate kinase middle domain FE003_09520 PF13090 Polyphosphate kinase C-terminal domain 2 FE003_09525 PF00149 Calcineurin-like phosphoesterase FE003_09535 PF00550 Phosphopantetheine attachment site FE003_09535 PF00857 Isochorismatase family FE003_09540 PF00106 short chain dehydrogenase FE003_09545 PF00005 ABC transporter FE003_09545 PF03459 TOBE domain FE003_09550 PF00528 Binding-protein-dependent transport system inner membrane component FE003_09560 PF03459 TOBE domain FE003_09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_09565 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FE003_09565 PF00355 Rieske [2Fe-2S] domain FE003_09570 PF00866 Ring hydroxylating beta subunit FE003_09575 PF00970 Oxidoreductase FAD-binding domain FE003_09575 PF00175 Oxidoreductase NAD-binding domain FE003_09575 PF00111 2Fe-2S iron-sulfur cluster binding domain FE003_09580 PF14525 AraC-binding-like domain FE003_09580 PF12833 Helix-turn-helix domain FE003_09590 PF01613 Flavin reductase like domain FE003_09605 PF01738 Dienelactone hydrolase family FE003_09610 PF07690 Major Facilitator Superfamily FE003_09615 PF12833 Helix-turn-helix domain FE003_09615 PF06719 AraC-type transcriptional regulator N-terminus FE003_09640 PF03466 LysR substrate binding domain FE003_09640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_09645 PF01144 Coenzyme A transferase FE003_09650 PF01144 Coenzyme A transferase FE003_09655 PF02667 Short chain fatty acid transporter FE003_09660 PF00108 Thiolase, N-terminal domain FE003_09660 PF02803 Thiolase, C-terminal domain FE003_09665 PF03466 LysR substrate binding domain FE003_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_09670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_09670 PF03466 LysR substrate binding domain FE003_09685 PF00206 Lyase FE003_09685 PF10415 Fumarase C C-terminus FE003_09690 PF00593 TonB dependent receptor FE003_09690 PF07715 TonB-dependent Receptor Plug Domain FE003_09695 PF00083 Sugar (and other) transporter FE003_09710 PF00005 ABC transporter FE003_09715 PF00528 Binding-protein-dependent transport system inner membrane component FE003_09720 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FE003_09745 PF02525 Flavodoxin-like fold FE003_09750 PF01638 HxlR-like helix-turn-helix FE003_09755 PF12833 Helix-turn-helix domain FE003_09755 PF06445 GyrI-like small molecule binding domain FE003_09770 PF01925 Sulfite exporter TauE/SafE FE003_09775 PF04273 Putative phosphatase (DUF442) FE003_09775 PF00753 Metallo-beta-lactamase superfamily FE003_09780 PF00753 Metallo-beta-lactamase superfamily FE003_09780 PF04273 Putative phosphatase (DUF442) FE003_09785 PF02954 Bacterial regulatory protein, Fis family FE003_09785 PF00158 Sigma-54 interaction domain FE003_09785 PF00072 Response regulator receiver domain FE003_09790 PF01062 Bestrophin, RFP-TM, chloride channel FE003_09795 PF00107 Zinc-binding dehydrogenase FE003_09795 PF08240 Alcohol dehydrogenase GroES-like domain FE003_09800 PF00106 short chain dehydrogenase FE003_09805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FE003_09805 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_09810 PF02817 e3 binding domain FE003_09810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FE003_09810 PF00364 Biotin-requiring enzyme FE003_09815 PF02780 Transketolase, C-terminal domain FE003_09815 PF02779 Transketolase, pyrimidine binding domain FE003_09820 PF00676 Dehydrogenase E1 component FE003_09825 PF04055 Radical SAM superfamily FE003_09840 PF00990 Diguanylate cyclase, GGDEF domain FE003_09840 PF08448 PAS fold FE003_09845 PF01264 Chorismate synthase FE003_09850 PF05175 Methyltransferase small domain FE003_09855 PF00291 Pyridoxal-phosphate dependent enzyme FE003_09865 PF17862 AAA+ lid domain FE003_09865 PF00004 ATPase family associated with various cellular activities (AAA) FE003_09865 PF01434 Peptidase family M41 FE003_09875 PF05166 YcgL domain FE003_09895 PF00570 HRDC domain FE003_09895 PF01612 3'-5' exonuclease FE003_09900 PF13662 Toprim domain FE003_09900 PF02132 RecR protein FE003_09905 PF02575 YbaB/EbfC DNA-binding family FE003_09915 PF01053 Cys/Met metabolism PLP-dependent enzyme FE003_09920 PF00561 alpha/beta hydrolase fold FE003_09925 PF08241 Methyltransferase domain FE003_09955 PF01230 HIT domain FE003_09990 PF00005 ABC transporter FE003_09995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FE003_10005 PF02684 Lipid-A-disaccharide synthetase FE003_10010 PF00593 TonB dependent receptor FE003_10010 PF07715 TonB-dependent Receptor Plug Domain FE003_10030 PF01925 Sulfite exporter TauE/SafE FE003_10035 PF00793 DAHP synthetase I family FE003_10040 PF02654 Cobalamin-5-phosphate synthase FE003_10055 PF02277 Phosphoribosyltransferase FE003_10060 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FE003_10100 PF00593 TonB dependent receptor FE003_10100 PF07715 TonB-dependent Receptor Plug Domain FE003_10115 PF06276 Ferric iron reductase FhuF-like transporter FE003_10115 PF04183 IucA / IucC family FE003_10120 PF06276 Ferric iron reductase FhuF-like transporter FE003_10120 PF04183 IucA / IucC family FE003_10125 PF07690 Major Facilitator Superfamily FE003_10130 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FE003_10135 PF06276 Ferric iron reductase FhuF-like transporter FE003_10135 PF04183 IucA / IucC family FE003_10140 PF04073 Aminoacyl-tRNA editing domain FE003_10150 PF03109 ABC1 family FE003_10155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_10155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_10155 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_10160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_10160 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_10160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_10165 PF00487 Fatty acid desaturase FE003_10170 PF12852 Cupin FE003_10170 PF12833 Helix-turn-helix domain FE003_10175 PF00639 PPIC-type PPIASE domain FE003_10175 PF09312 SurA N-terminal domain FE003_10180 PF00216 Bacterial DNA-binding protein FE003_10195 PF02082 Transcriptional regulator FE003_10200 PF00266 Aminotransferase class-V FE003_10205 PF01592 NifU-like N terminal domain FE003_10210 PF01521 Iron-sulphur cluster biosynthesis FE003_10215 PF07743 HSCB C-terminal oligomerisation domain FE003_10215 PF00226 DnaJ domain FE003_10220 PF00012 Hsp70 protein FE003_10225 PF00111 2Fe-2S iron-sulfur cluster binding domain FE003_10230 PF00211 Adenylate and Guanylate cyclase catalytic domain FE003_10240 PF03461 TRCF domain FE003_10240 PF17757 UvrB interaction domain FE003_10240 PF00271 Helicase conserved C-terminal domain FE003_10240 PF02559 CarD-like/TRCF domain FE003_10240 PF00270 DEAD/DEAH box helicase FE003_10260 PF03737 Aldolase/RraA FE003_10265 PF13460 NAD(P)H-binding FE003_10270 PF01649 Ribosomal protein S20 FE003_10280 PF00459 Inositol monophosphatase family FE003_10295 PF00005 ABC transporter FE003_10295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FE003_10300 PF00528 Binding-protein-dependent transport system inner membrane component FE003_10305 PF00528 Binding-protein-dependent transport system inner membrane component FE003_10310 PF01432 Peptidase family M3 FE003_10330 PF00593 TonB dependent receptor FE003_10330 PF07715 TonB-dependent Receptor Plug Domain FE003_10340 PF01618 MotA/TolQ/ExbB proton channel family FE003_10345 PF02472 Biopolymer transport protein ExbD/TolR FE003_10350 PF02472 Biopolymer transport protein ExbD/TolR FE003_10360 PF01274 Malate synthase FE003_10415 PF01551 Peptidase family M23 FE003_10415 PF10145 Phage-related minor tail protein FE003_10415 PF01464 Transglycosylase SLT domain FE003_10470 PF04860 Phage portal protein FE003_10540 PF00772 DnaB-like helicase N terminal domain FE003_10540 PF03796 DnaB-like helicase C terminal domain FE003_10605 PF00589 Phage integrase family FE003_10605 PF02899 Phage integrase, N-terminal SAM-like domain FE003_10610 PF03969 AFG1-like ATPase FE003_10620 PF00743 Flavin-binding monooxygenase-like FE003_10640 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FE003_10650 PF00216 Bacterial DNA-binding protein FE003_10655 PF00575 S1 RNA binding domain FE003_10660 PF02224 Cytidylate kinase FE003_10670 PF14437 MafB19-like deaminase FE003_10680 PF03167 Uracil DNA glycosylase superfamily FE003_10690 PF03934 Type II secretion system (T2SS), protein K FE003_10695 PF07963 Prokaryotic N-terminal methylation motif FE003_10695 PF11612 Type II secretion system (T2SS), protein J FE003_10700 PF07963 Prokaryotic N-terminal methylation motif FE003_10700 PF02501 Type II secretion system (T2SS), protein I FE003_10715 PF01026 TatD related DNase FE003_10725 PF09115 DNA polymerase III, delta subunit, C terminal FE003_10730 PF02348 Cytidylyltransferase FE003_10735 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FE003_10740 PF00005 ABC transporter FE003_10740 PF00664 ABC transporter transmembrane region FE003_10750 PF01618 MotA/TolQ/ExbB proton channel family FE003_10755 PF17762 HTH domain found in ParB protein FE003_10755 PF02195 ParB-like nuclease domain FE003_10760 PF13614 AAA domain FE003_10765 PF02527 rRNA small subunit methyltransferase G FE003_10770 PF00483 Nucleotidyl transferase FE003_10775 PF01636 Phosphotransferase enzyme family FE003_10780 PF03968 OstA-like protein FE003_10780 PF04453 LPS transport system D FE003_10785 PF09312 SurA N-terminal domain FE003_10785 PF00639 PPIC-type PPIASE domain FE003_10790 PF01116 Fructose-bisphosphate aldolase class-II FE003_10800 PF00162 Phosphoglycerate kinase FE003_10810 PF02545 Maf-like protein FE003_10815 PF08007 Cupin superfamily protein FE003_10830 PF00375 Sodium:dicarboxylate symporter family FE003_10835 PF06912 Protein of unknown function (DUF1275) FE003_10840 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FE003_10845 PF00005 ABC transporter FE003_10845 PF00664 ABC transporter transmembrane region FE003_10855 PF12833 Helix-turn-helix domain FE003_10855 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FE003_10860 PF01597 Glycine cleavage H-protein FE003_10865 PF02146 Sir2 family FE003_10870 PF00474 Sodium:solute symporter family FE003_10875 PF01037 Lrp/AsnC ligand binding domain FE003_10880 PF01619 Proline dehydrogenase FE003_10880 PF14850 DNA-binding domain of Proline dehydrogenase FE003_10880 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FE003_10880 PF00171 Aldehyde dehydrogenase family FE003_10885 PF04229 GrpB protein FE003_10890 PF05958 tRNA (Uracil-5-)-methyltransferase FE003_10900 PF09992 Phosphodiester glycosidase FE003_10910 PF04264 YceI-like domain FE003_10920 PF02779 Transketolase, pyrimidine binding domain FE003_10920 PF02780 Transketolase, C-terminal domain FE003_10920 PF00456 Transketolase, thiamine diphosphate binding domain FE003_10925 PF00438 S-adenosylmethionine synthetase, N-terminal domain FE003_10925 PF02772 S-adenosylmethionine synthetase, central domain FE003_10925 PF02773 S-adenosylmethionine synthetase, C-terminal domain FE003_10950 PF00905 Penicillin binding protein transpeptidase domain FE003_10965 PF02075 Crossover junction endodeoxyribonuclease RuvC FE003_10970 PF03853 YjeF-related protein N-terminus FE003_10970 PF01256 Carbohydrate kinase FE003_10975 PF08331 Domain of unknown function (DUF1730) FE003_10980 PF06968 Biotin and Thiamin Synthesis associated domain FE003_10980 PF04055 Radical SAM superfamily FE003_10995 PF16970 Type-1 fimbrial protein, A FE003_11000 PF02753 Pili assembly chaperone PapD, C-terminal domain FE003_11000 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FE003_11005 PF00577 Outer membrane usher protein FE003_11005 PF13953 PapC C-terminal domain FE003_11005 PF13954 PapC N-terminal domain FE003_11030 PF00892 EamA-like transporter family FE003_11040 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FE003_11050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11050 PF03466 LysR substrate binding domain FE003_11070 PF00440 Bacterial regulatory proteins, tetR family FE003_11080 PF01709 Transcriptional regulator FE003_11085 PF01037 Lrp/AsnC ligand binding domain FE003_11095 PF00005 ABC transporter FE003_11100 PF00528 Binding-protein-dependent transport system inner membrane component FE003_11105 PF00528 Binding-protein-dependent transport system inner membrane component FE003_11120 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FE003_11120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_11130 PF00296 Luciferase-like monooxygenase FE003_11135 PF03180 NLPA lipoprotein FE003_11140 PF03180 NLPA lipoprotein FE003_11145 PF09383 NIL domain FE003_11145 PF00005 ABC transporter FE003_11150 PF00528 Binding-protein-dependent transport system inner membrane component FE003_11155 PF01926 50S ribosome-binding GTPase FE003_11155 PF06071 Protein of unknown function (DUF933) FE003_11180 PF03591 AzlC protein FE003_11185 PF05437 Branched-chain amino acid transport protein (AzlD) FE003_11195 PF02222 ATP-grasp domain FE003_11200 PF01909 Nucleotidyltransferase domain FE003_11200 PF01966 HD domain FE003_11200 PF08335 GlnD PII-uridylyltransferase FE003_11205 PF00155 Aminotransferase class I and II FE003_11215 PF12852 Cupin FE003_11215 PF12833 Helix-turn-helix domain FE003_11220 PF00255 Glutathione peroxidase FE003_11225 PF01641 SelR domain FE003_11230 PF00155 Aminotransferase class I and II FE003_11235 PF00375 Sodium:dicarboxylate symporter family FE003_11240 PF00710 Asparaginase, N-terminal FE003_11240 PF17763 Glutaminase/Asparaginase C-terminal domain FE003_11245 PF07733 Bacterial DNA polymerase III alpha NTPase domain FE003_11245 PF01336 OB-fold nucleic acid binding domain FE003_11245 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FE003_11245 PF02811 PHP domain FE003_11245 PF14579 Helix-hairpin-helix motif FE003_11250 PF00588 SpoU rRNA Methylase family FE003_11255 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_11270 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_11270 PF13192 Thioredoxin domain FE003_11285 PF03466 LysR substrate binding domain FE003_11285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11290 PF01758 Sodium Bile acid symporter family FE003_11295 PF01022 Bacterial regulatory protein, arsR family FE003_11300 PF03960 ArsC family FE003_11310 PF01979 Amidohydrolase family FE003_11310 PF13382 Adenine deaminase C-terminal domain FE003_11320 PF03466 LysR substrate binding domain FE003_11320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11330 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FE003_11335 PF01177 Asp/Glu/Hydantoin racemase FE003_11340 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FE003_11345 PF00528 Binding-protein-dependent transport system inner membrane component FE003_11350 PF00005 ABC transporter FE003_11355 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FE003_11365 PF00083 Sugar (and other) transporter FE003_11370 PF00296 Luciferase-like monooxygenase FE003_11375 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FE003_11375 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_11375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_11390 PF01654 Cytochrome bd terminal oxidase subunit I FE003_11395 PF02322 Cytochrome bd terminal oxidase subunit II FE003_11405 PF00155 Aminotransferase class I and II FE003_11405 PF00392 Bacterial regulatory proteins, gntR family FE003_11410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11410 PF03466 LysR substrate binding domain FE003_11425 PF00698 Acyl transferase domain FE003_11430 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FE003_11440 PF01039 Carboxyl transferase domain FE003_11445 PF06857 Malonate decarboxylase delta subunit (MdcD) FE003_11450 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FE003_11455 PF16957 Malonate decarboxylase, alpha subunit, transporter FE003_11460 PF07690 Major Facilitator Superfamily FE003_11475 PF00392 Bacterial regulatory proteins, gntR family FE003_11475 PF00155 Aminotransferase class I and II FE003_11480 PF04172 LrgB-like family FE003_11485 PF03788 LrgA family FE003_11490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11490 PF03466 LysR substrate binding domain FE003_11495 PF02798 Glutathione S-transferase, N-terminal domain FE003_11495 PF14834 Glutathione S-transferase, C-terminal domain FE003_11500 PF02798 Glutathione S-transferase, N-terminal domain FE003_11505 PF03466 LysR substrate binding domain FE003_11505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11515 PF00581 Rhodanese-like domain FE003_11520 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_11530 PF00266 Aminotransferase class-V FE003_11540 PF01810 LysE type translocator FE003_11545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11545 PF03466 LysR substrate binding domain FE003_11555 PF00497 Bacterial extracellular solute-binding proteins, family 3 FE003_11560 PF00497 Bacterial extracellular solute-binding proteins, family 3 FE003_11565 PF00005 ABC transporter FE003_11570 PF00528 Binding-protein-dependent transport system inner membrane component FE003_11575 PF00528 Binding-protein-dependent transport system inner membrane component FE003_11590 PF00072 Response regulator receiver domain FE003_11595 PF00072 Response regulator receiver domain FE003_11595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_11595 PF00512 His Kinase A (phospho-acceptor) domain FE003_11595 PF09308 LuxQ, periplasmic FE003_11605 PF13404 AsnC-type helix-turn-helix domain FE003_11605 PF01037 Lrp/AsnC ligand binding domain FE003_11615 PF00717 Peptidase S24-like FE003_11640 PF00199 Catalase FE003_11640 PF18011 C-terminal domain found in long catalases FE003_11640 PF06628 Catalase-related immune-responsive FE003_11650 PF02464 Competence-damaged protein FE003_11650 PF18146 Damage-inducible protein CinA KH domain FE003_11650 PF00994 Probable molybdopterin binding domain FE003_11680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11680 PF03466 LysR substrate binding domain FE003_11700 PF00501 AMP-binding enzyme FE003_11700 PF13193 AMP-binding enzyme C-terminal domain FE003_11705 PF00440 Bacterial regulatory proteins, tetR family FE003_11710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_11710 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_11710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_11715 PF01039 Carboxyl transferase domain FE003_11720 PF00378 Enoyl-CoA hydratase/isomerase FE003_11725 PF02785 Biotin carboxylase C-terminal domain FE003_11725 PF00364 Biotin-requiring enzyme FE003_11725 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FE003_11725 PF00289 Biotin carboxylase, N-terminal domain FE003_11730 PF00682 HMGL-like FE003_11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11735 PF03466 LysR substrate binding domain FE003_11750 PF12806 Acetyl-CoA dehydrogenase C-terminal like FE003_11750 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_11750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_11750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_11760 PF07690 Major Facilitator Superfamily FE003_11770 PF01144 Coenzyme A transferase FE003_11775 PF01144 Coenzyme A transferase FE003_11780 PF07690 Major Facilitator Superfamily FE003_11785 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_11785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_11785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_11790 PF00378 Enoyl-CoA hydratase/isomerase FE003_11800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FE003_11800 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FE003_11800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FE003_11805 PF02803 Thiolase, C-terminal domain FE003_11805 PF00108 Thiolase, N-terminal domain FE003_11810 PF09339 IclR helix-turn-helix domain FE003_11815 PF07690 Major Facilitator Superfamily FE003_11820 PF03060 Nitronate monooxygenase FE003_11825 PF00378 Enoyl-CoA hydratase/isomerase FE003_11830 PF09339 IclR helix-turn-helix domain FE003_11835 PF02515 CoA-transferase family III FE003_11840 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_11840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_11840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_11845 PF07690 Major Facilitator Superfamily FE003_11850 PF13419 Haloacid dehalogenase-like hydrolase FE003_11855 PF00266 Aminotransferase class-V FE003_11860 PF01266 FAD dependent oxidoreductase FE003_11865 PF00528 Binding-protein-dependent transport system inner membrane component FE003_11870 PF00005 ABC transporter FE003_11870 PF08402 TOBE domain FE003_11880 PF07702 UTRA domain FE003_11880 PF00392 Bacterial regulatory proteins, gntR family FE003_11885 PF01494 FAD binding domain FE003_11890 PF09339 IclR helix-turn-helix domain FE003_11890 PF01614 Bacterial transcriptional regulator FE003_11895 PF02525 Flavodoxin-like fold FE003_11900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_11900 PF03466 LysR substrate binding domain FE003_11905 PF02627 Carboxymuconolactone decarboxylase family FE003_11910 PF00171 Aldehyde dehydrogenase family FE003_11920 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FE003_11930 PF00171 Aldehyde dehydrogenase family FE003_11935 PF00296 Luciferase-like monooxygenase FE003_11940 PF01613 Flavin reductase like domain FE003_11945 PF12697 Alpha/beta hydrolase family FE003_11965 PF01292 Prokaryotic cytochrome b561 FE003_11970 PF00199 Catalase FE003_12010 PF03061 Thioesterase superfamily FE003_12015 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_12020 PF08223 PaaX-like protein C-terminal domain FE003_12020 PF07848 PaaX-like protein FE003_12025 PF14535 AMP-binding enzyme C-terminal domain FE003_12025 PF00501 AMP-binding enzyme FE003_12030 PF00108 Thiolase, N-terminal domain FE003_12030 PF02803 Thiolase, C-terminal domain FE003_12035 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FE003_12035 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FE003_12035 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FE003_12040 PF00378 Enoyl-CoA hydratase/isomerase FE003_12045 PF00378 Enoyl-CoA hydratase/isomerase FE003_12050 PF00970 Oxidoreductase FAD-binding domain FE003_12050 PF00111 2Fe-2S iron-sulfur cluster binding domain FE003_12050 PF00175 Oxidoreductase NAD-binding domain FE003_12055 PF01883 Iron-sulfur cluster assembly protein FE003_12060 PF05138 Phenylacetic acid catabolic protein FE003_12065 PF06243 Phenylacetic acid degradation B FE003_12070 PF05138 Phenylacetic acid catabolic protein FE003_12075 PF01575 MaoC like domain FE003_12075 PF00171 Aldehyde dehydrogenase family FE003_12080 PF03313 Serine dehydratase alpha chain FE003_12080 PF03315 Serine dehydratase beta chain FE003_12085 PF13520 Amino acid permease FE003_12090 PF00171 Aldehyde dehydrogenase family FE003_12095 PF00083 Sugar (and other) transporter FE003_12105 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_12105 PF04324 BFD-like [2Fe-2S] binding domain FE003_12115 PF01266 FAD dependent oxidoreductase FE003_12120 PF05544 Proline racemase FE003_12125 PF00392 Bacterial regulatory proteins, gntR family FE003_12135 PF00701 Dihydrodipicolinate synthetase family FE003_12150 PF00376 MerR family regulatory protein FE003_12150 PF09278 MerR, DNA binding FE003_12165 PF02677 Epoxyqueuosine reductase QueH FE003_12180 PF07690 Major Facilitator Superfamily FE003_12185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FE003_12195 PF03466 LysR substrate binding domain FE003_12195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_12225 PF00004 ATPase family associated with various cellular activities (AAA) FE003_12225 PF07724 AAA domain (Cdc48 subfamily) FE003_12225 PF10431 C-terminal, D2-small domain, of ClpB protein FE003_12225 PF17871 AAA lid domain FE003_12235 PF01389 OmpA-like transmembrane domain FE003_12235 PF00691 OmpA family FE003_12290 PF13936 Helix-turn-helix domain FE003_12290 PF00665 Integrase core domain FE003_12310 PF00005 ABC transporter FE003_12315 PF00497 Bacterial extracellular solute-binding proteins, family 3 FE003_12320 PF01425 Amidase FE003_12325 PF01402 Ribbon-helix-helix protein, copG family FE003_12325 PF08753 NikR C terminal nickel binding domain FE003_12345 PF02525 Flavodoxin-like fold FE003_12350 PF00289 Biotin carboxylase, N-terminal domain FE003_12350 PF02785 Biotin carboxylase C-terminal domain FE003_12350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FE003_12365 PF13823 Alcohol dehydrogenase GroES-associated FE003_12365 PF08240 Alcohol dehydrogenase GroES-like domain FE003_12365 PF00107 Zinc-binding dehydrogenase FE003_12375 PF00440 Bacterial regulatory proteins, tetR family FE003_12400 PF00654 Voltage gated chloride channel FE003_12405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FE003_12405 PF00364 Biotin-requiring enzyme FE003_12405 PF02785 Biotin carboxylase C-terminal domain FE003_12405 PF00289 Biotin carboxylase, N-terminal domain FE003_12415 PF07286 Protein of unknown function (DUF1445) FE003_12420 PF03746 LamB/YcsF family FE003_12425 PF01566 Natural resistance-associated macrophage protein FE003_12430 PF03466 LysR substrate binding domain FE003_12430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_12445 PF03527 RHS protein FE003_12445 PF05593 RHS Repeat FE003_12445 PF14220 Domain of unknown function (DUF4329) FE003_12450 PF16671 Actin cross-linking domain FE003_12450 PF04717 Type VI secretion system, phage-baseplate injector FE003_12465 PF13419 Haloacid dehalogenase-like hydrolase FE003_12485 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FE003_12485 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FE003_12505 PF07690 Major Facilitator Superfamily FE003_12520 PF03279 Bacterial lipid A biosynthesis acyltransferase FE003_12525 PF00563 EAL domain FE003_12525 PF03707 Bacterial signalling protein N terminal repeat FE003_12525 PF00990 Diguanylate cyclase, GGDEF domain FE003_12530 PF13936 Helix-turn-helix domain FE003_12530 PF00665 Integrase core domain FE003_12535 PF00892 EamA-like transporter family FE003_12540 PF01037 Lrp/AsnC ligand binding domain FE003_12545 PF00488 MutS domain V FE003_12545 PF05188 MutS domain II FE003_12545 PF05192 MutS domain III FE003_12545 PF05190 MutS family domain IV FE003_12545 PF01624 MutS domain I FE003_12555 PF00037 4Fe-4S binding domain FE003_12555 PF11953 Domain of unknown function (DUF3470) FE003_12565 PF01596 O-methyltransferase FE003_12575 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_12580 PF01205 Uncharacterized protein family UPF0029 FE003_12590 PF00664 ABC transporter transmembrane region FE003_12590 PF00005 ABC transporter FE003_12590 PF03412 Peptidase C39 family FE003_12595 PF02321 Outer membrane efflux protein FE003_12600 PF00005 ABC transporter FE003_12600 PF12399 Branched-chain amino acid ATP-binding cassette transporter FE003_12605 PF03968 OstA-like protein FE003_12620 PF01380 SIS domain FE003_12620 PF00571 CBS domain FE003_12625 PF01406 tRNA synthetases class I (C) catalytic domain FE003_12625 PF09190 DALR domain FE003_12635 PF00589 Phage integrase family FE003_12795 PF01381 Helix-turn-helix FE003_12880 PF01638 HxlR-like helix-turn-helix FE003_12885 PF07690 Major Facilitator Superfamily FE003_12915 PF14748 Pyrroline-5-carboxylate reductase dimerisation FE003_12915 PF03807 NADP oxidoreductase coenzyme F420-dependent FE003_12925 PF00313 'Cold-shock' DNA-binding domain FE003_12930 PF01810 LysE type translocator FE003_12965 PF13742 OB-fold nucleic acid binding domain FE003_12965 PF02601 Exonuclease VII, large subunit FE003_13005 PF00376 MerR family regulatory protein FE003_13005 PF09278 MerR, DNA binding FE003_13010 PF00403 Heavy-metal-associated domain FE003_13015 PF00403 Heavy-metal-associated domain FE003_13020 PF03466 LysR substrate binding domain FE003_13020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_13025 PF00355 Rieske [2Fe-2S] domain FE003_13025 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FE003_13030 PF00866 Ring hydroxylating beta subunit FE003_13035 PF00970 Oxidoreductase FAD-binding domain FE003_13035 PF00111 2Fe-2S iron-sulfur cluster binding domain FE003_13035 PF00175 Oxidoreductase NAD-binding domain FE003_13040 PF00106 short chain dehydrogenase FE003_13045 PF03594 Benzoate membrane transport protein FE003_13050 PF07690 Major Facilitator Superfamily FE003_13060 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FE003_13060 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FE003_13065 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FE003_13065 PF11898 Domain of unknown function (DUF3418) FE003_13065 PF04408 Helicase associated domain (HA2) FE003_13065 PF00271 Helicase conserved C-terminal domain FE003_13065 PF00270 DEAD/DEAH box helicase FE003_13070 PF00578 AhpC/TSA family FE003_13070 PF10417 C-terminal domain of 1-Cys peroxiredoxin FE003_13090 PF13192 Thioredoxin domain FE003_13090 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_13100 PF02798 Glutathione S-transferase, N-terminal domain FE003_13100 PF00043 Glutathione S-transferase, C-terminal domain FE003_13110 PF02390 Putative methyltransferase FE003_13115 PF13417 Glutathione S-transferase, N-terminal domain FE003_13115 PF00043 Glutathione S-transferase, C-terminal domain FE003_13125 PF00691 OmpA family FE003_13125 PF13488 Glycine zipper FE003_13130 PF01979 Amidohydrolase family FE003_13135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FE003_13135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FE003_13145 PF02926 THUMP domain FE003_13145 PF01170 Putative RNA methylase family UPF0020 FE003_13145 PF10672 S-adenosylmethionine-dependent methyltransferase FE003_13160 PF07724 AAA domain (Cdc48 subfamily) FE003_13160 PF10431 C-terminal, D2-small domain, of ClpB protein FE003_13160 PF02861 Clp amino terminal domain, pathogenicity island component FE003_13160 PF00004 ATPase family associated with various cellular activities (AAA) FE003_13160 PF17871 AAA lid domain FE003_13175 PF02566 OsmC-like protein FE003_13180 PF13545 Crp-like helix-turn-helix domain FE003_13180 PF00027 Cyclic nucleotide-binding domain FE003_13190 PF00248 Aldo/keto reductase family FE003_13205 PF00709 Adenylosuccinate synthetase FE003_13210 PF13393 Histidyl-tRNA synthetase FE003_13215 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FE003_13215 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FE003_13220 PF02272 DHHA1 domain FE003_13220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FE003_13220 PF01411 tRNA synthetases class II (A) FE003_13225 PF00696 Amino acid kinase family FE003_13225 PF13840 ACT domain FE003_13225 PF01842 ACT domain FE003_13230 PF02599 Global regulator protein family FE003_13235 PF01351 Ribonuclease HII FE003_13245 PF01292 Prokaryotic cytochrome b561 FE003_13250 PF00962 Adenosine/AMP deaminase FE003_13255 PF00860 Permease family FE003_13265 PF00743 Flavin-binding monooxygenase-like FE003_13270 PF00106 short chain dehydrogenase FE003_13280 PF17954 Quercetinase C-terminal cupin domain FE003_13280 PF02678 Pirin FE003_13285 PF00440 Bacterial regulatory proteins, tetR family FE003_13285 PF17932 Tetracyclin repressor-like, C-terminal domain FE003_13295 PF00106 short chain dehydrogenase FE003_13305 PF13610 DDE domain FE003_13320 PF00563 EAL domain FE003_13320 PF00990 Diguanylate cyclase, GGDEF domain FE003_13320 PF08447 PAS fold FE003_13320 PF08448 PAS fold FE003_13345 PF10411 Disulfide bond isomerase protein N-terminus FE003_13345 PF13098 Thioredoxin-like domain FE003_13435 PF01751 Toprim domain FE003_13435 PF01131 DNA topoisomerase FE003_13465 PF00145 C-5 cytosine-specific DNA methylase FE003_13510 PF08535 KorB domain FE003_13510 PF06613 KorB C-terminal beta-barrel domain FE003_13510 PF02195 ParB-like nuclease domain FE003_13515 PF13614 AAA domain FE003_13530 PF00809 Pterin binding enzyme FE003_13535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FE003_13535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FE003_13535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FE003_13535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FE003_13550 PF03466 LysR substrate binding domain FE003_13550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_13555 PF07690 Major Facilitator Superfamily FE003_13565 PF13610 DDE domain FE003_13580 PF01695 IstB-like ATP binding protein FE003_13585 PF00665 Integrase core domain FE003_13590 PF13610 DDE domain FE003_13605 PF00455 DeoR C terminal sensor domain FE003_13605 PF08220 DeoR-like helix-turn-helix domain FE003_13615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FE003_13615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FE003_13630 PF13610 DDE domain FE003_13635 PF04717 Type VI secretion system, phage-baseplate injector FE003_13635 PF16671 Actin cross-linking domain FE003_13650 PF03180 NLPA lipoprotein FE003_13655 PF05987 Bacterial protein of unknown function (DUF898) FE003_13670 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_13670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FE003_13675 PF00764 Arginosuccinate synthase FE003_13680 PF00990 Diguanylate cyclase, GGDEF domain FE003_13680 PF00563 EAL domain FE003_13680 PF01590 GAF domain FE003_13680 PF00360 Phytochrome region FE003_13685 PF01979 Amidohydrolase family FE003_13690 PF00929 Exonuclease FE003_13700 PF00593 TonB dependent receptor FE003_13700 PF07715 TonB-dependent Receptor Plug Domain FE003_13705 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_13705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FE003_13710 PF00005 ABC transporter FE003_13710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FE003_13715 PF00528 Binding-protein-dependent transport system inner membrane component FE003_13715 PF12911 N-terminal TM domain of oligopeptide transport permease C FE003_13720 PF00528 Binding-protein-dependent transport system inner membrane component FE003_13725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FE003_13730 PF01476 LysM domain FE003_13730 PF01464 Transglycosylase SLT domain FE003_13730 PF01476 LysM domain FE003_13730 PF01464 Transglycosylase SLT domain FE003_13735 PF00929 Exonuclease FE003_13745 PF00293 NUDIX domain FE003_13745 PF09297 NADH pyrophosphatase zinc ribbon domain FE003_13755 PF04972 BON domain FE003_13760 PF02021 Uncharacterised protein family UPF0102 FE003_13765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FE003_13775 PF03466 LysR substrate binding domain FE003_13775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_13780 PF01810 LysE type translocator FE003_13790 PF13411 MerR HTH family regulatory protein FE003_13800 PF01494 FAD binding domain FE003_13805 PF01494 FAD binding domain FE003_13810 PF05195 Aminopeptidase P, N-terminal domain FE003_13810 PF00557 Metallopeptidase family M24 FE003_13845 PF00884 Sulfatase FE003_13845 PF08019 Phosphoethanolamine transferase EptA/EptB FE003_13890 PF01476 LysM domain FE003_13890 PF08525 Opacity-associated protein A N-terminal motif FE003_13890 PF01551 Peptidase family M23 FE003_14215 PF01812 5-formyltetrahydrofolate cyclo-ligase family FE003_14225 PF03895 YadA-like membrane anchor domain FE003_14225 PF13018 Extended Signal Peptide of Type V secretion system FE003_14225 PF05662 Coiled stalk of trimeric autotransporter adhesin FE003_14225 PF05658 Head domain of trimeric autotransporter adhesin FE003_14230 PF05362 Lon protease (S16) C-terminal proteolytic domain FE003_14230 PF00004 ATPase family associated with various cellular activities (AAA) FE003_14230 PF02190 ATP-dependent protease La (LON) substrate-binding domain FE003_14240 PF02590 Predicted SPOUT methyltransferase FE003_14245 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FE003_14255 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FE003_14255 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FE003_14260 PF04060 Putative Fe-S cluster FE003_14265 PF00730 HhH-GPD superfamily base excision DNA repair protein FE003_14265 PF00633 Helix-hairpin-helix motif FE003_14265 PF10576 Iron-sulfur binding domain of endonuclease III FE003_14275 PF05191 Adenylate kinase, active site lid FE003_14290 PF03717 Penicillin-binding Protein dimerisation domain FE003_14290 PF00905 Penicillin binding protein transpeptidase domain FE003_14305 PF02492 CobW/HypB/UreG, nucleotide-binding domain FE003_14310 PF01730 UreF FE003_14315 PF05194 UreE urease accessory protein, C-terminal domain FE003_14315 PF02814 UreE urease accessory protein, N-terminal domain FE003_14320 PF00449 Urease alpha-subunit, N-terminal domain FE003_14320 PF01979 Amidohydrolase family FE003_14325 PF00699 Urease beta subunit FE003_14330 PF00547 Urease, gamma subunit FE003_14335 PF01774 UreD urease accessory protein FE003_14350 PF00463 Isocitrate lyase family FE003_14355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_14355 PF03466 LysR substrate binding domain FE003_14360 PF03471 Transporter associated domain FE003_14360 PF00571 CBS domain FE003_14360 PF01595 Cyclin M transmembrane N-terminal domain FE003_14370 PF03600 Citrate transporter FE003_14385 PF00009 Elongation factor Tu GTP binding domain FE003_14390 PF01507 Phosphoadenosine phosphosulfate reductase family FE003_14400 PF14052 Capsule assembly protein Wzi FE003_14405 PF00152 tRNA synthetases class II (D, K and N) FE003_14405 PF01336 OB-fold nucleic acid binding domain FE003_14420 PF00301 Rubredoxin FE003_14425 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_14425 PF18113 Rubredoxin binding C-terminal domain FE003_14430 PF00561 alpha/beta hydrolase fold FE003_14435 PF03466 LysR substrate binding domain FE003_14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_14445 PF13089 Polyphosphate kinase N-terminal domain FE003_14445 PF17941 Polyphosphate kinase C-terminal domain 1 FE003_14445 PF02503 Polyphosphate kinase middle domain FE003_14445 PF13090 Polyphosphate kinase C-terminal domain 2 FE003_14450 PF00912 Transglycosylase FE003_14455 PF01694 Rhomboid family FE003_14465 PF00005 ABC transporter FE003_14470 PF13472 GDSL-like Lipase/Acylhydrolase family FE003_14475 PF00484 Carbonic anhydrase FE003_14480 PF00561 alpha/beta hydrolase fold FE003_14490 PF07715 TonB-dependent Receptor Plug Domain FE003_14490 PF00593 TonB dependent receptor FE003_14495 PF01106 NifU-like domain FE003_14495 PF01521 Iron-sulphur cluster biosynthesis FE003_14505 PF00884 Sulfatase FE003_14510 PF03781 Sulfatase-modifying factor enzyme 1 FE003_14525 PF00291 Pyridoxal-phosphate dependent enzyme FE003_14530 PF01384 Phosphate transporter family FE003_14535 PF00809 Pterin binding enzyme FE003_14535 PF02310 B12 binding domain FE003_14535 PF02965 Vitamin B12 dependent methionine synthase, activation domain FE003_14535 PF02574 Homocysteine S-methyltransferase FE003_14535 PF02607 B12 binding domain FE003_14540 PF02780 Transketolase, C-terminal domain FE003_14540 PF02779 Transketolase, pyrimidine binding domain FE003_14545 PF00456 Transketolase, thiamine diphosphate binding domain FE003_14550 PF07690 Major Facilitator Superfamily FE003_14560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_14560 PF03466 LysR substrate binding domain FE003_14575 PF01263 Aldose 1-epimerase FE003_14580 PF07690 Major Facilitator Superfamily FE003_14585 PF12833 Helix-turn-helix domain FE003_14585 PF02311 AraC-like ligand binding domain FE003_14590 PF04960 Glutaminase FE003_14595 PF01327 Polypeptide deformylase FE003_14600 PF07690 Major Facilitator Superfamily FE003_14610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FE003_14610 PF00205 Thiamine pyrophosphate enzyme, central domain FE003_14610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FE003_14615 PF00171 Aldehyde dehydrogenase family FE003_14620 PF01958 Domain of unknown function DUF108 FE003_14620 PF03447 Homoserine dehydrogenase, NAD binding domain FE003_14630 PF12697 Alpha/beta hydrolase family FE003_14640 PF07690 Major Facilitator Superfamily FE003_14645 PF14759 Reductase C-terminal FE003_14645 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_14650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FE003_14660 PF00355 Rieske [2Fe-2S] domain FE003_14670 PF00355 Rieske [2Fe-2S] domain FE003_14675 PF01614 Bacterial transcriptional regulator FE003_14675 PF09339 IclR helix-turn-helix domain FE003_14690 PF00378 Enoyl-CoA hydratase/isomerase FE003_14700 PF00535 Glycosyl transferase family 2 FE003_14705 PF14883 Hypothetical glycosyl hydrolase family 13 FE003_14705 PF01522 Polysaccharide deacetylase FE003_14710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FE003_14715 PF07152 YaeQ protein FE003_14720 PF00375 Sodium:dicarboxylate symporter family FE003_14725 PF07683 Cobalamin synthesis protein cobW C-terminal domain FE003_14725 PF02492 CobW/HypB/UreG, nucleotide-binding domain FE003_14735 PF03061 Thioesterase superfamily FE003_14745 PF02028 BCCT, betaine/carnitine/choline family transporter FE003_14750 PF02028 BCCT, betaine/carnitine/choline family transporter FE003_14755 PF00440 Bacterial regulatory proteins, tetR family FE003_14755 PF13977 BetI-type transcriptional repressor, C-terminal FE003_14760 PF00171 Aldehyde dehydrogenase family FE003_14765 PF00732 GMC oxidoreductase FE003_14765 PF05199 GMC oxidoreductase FE003_14770 PF06039 Malate:quinone oxidoreductase (Mqo) FE003_14780 PF02574 Homocysteine S-methyltransferase FE003_14785 PF13520 Amino acid permease FE003_14810 PF00701 Dihydrodipicolinate synthetase family FE003_14815 PF00083 Sugar (and other) transporter FE003_14885 PF00436 Single-strand binding protein family FE003_14930 PF00589 Phage integrase family FE003_14930 PF13356 Arm DNA-binding domain FE003_14945 PF07690 Major Facilitator Superfamily FE003_14950 PF13533 Biotin-lipoyl like FE003_14955 PF03061 Thioesterase superfamily FE003_14960 PF00490 Delta-aminolevulinic acid dehydratase FE003_14965 PF01266 FAD dependent oxidoreductase FE003_14970 PF01370 NAD dependent epimerase/dehydratase family FE003_14970 PF08338 Domain of unknown function (DUF1731) FE003_14990 PF12320 Type 5 capsule protein repressor C-terminal domain FE003_14990 PF00149 Calcineurin-like phosphoesterase FE003_15000 PF01168 Alanine racemase, N-terminal domain FE003_15005 PF00437 Type II/IV secretion system protein FE003_15010 PF00437 Type II/IV secretion system protein FE003_15015 PF01475 Ferric uptake regulator family FE003_15020 PF04355 SmpA / OmlA family FE003_15025 PF03658 RnfH family Ubiquitin FE003_15040 PF01814 Hemerythrin HHE cation binding domain FE003_15045 PF13230 Glutamine amidotransferases class-II FE003_15055 PF00696 Amino acid kinase family FE003_15060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FE003_15060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FE003_15060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FE003_15060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FE003_15065 PF00692 dUTPase FE003_15070 PF13361 UvrD-like helicase C-terminal domain FE003_15070 PF00580 UvrD/REP helicase N-terminal domain FE003_15075 PF00691 OmpA family FE003_15075 PF13488 Glycine zipper FE003_15080 PF01553 Acyltransferase FE003_15090 PF03775 Septum formation inhibitor MinC, C-terminal domain FE003_15095 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FE003_15100 PF03776 Septum formation topological specificity factor MinE FE003_15125 PF01810 LysE type translocator FE003_15130 PF01580 FtsK/SpoIIIE family FE003_15130 PF17854 FtsK alpha domain FE003_15130 PF09397 Ftsk gamma domain FE003_15130 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FE003_15135 PF07992 Pyridine nucleotide-disulphide oxidoreductase FE003_15140 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FE003_15145 PF04376 Arginine-tRNA-protein transferase, N terminus FE003_15145 PF04377 Arginine-tRNA-protein transferase, C terminus FE003_15150 PF00583 Acetyltransferase (GNAT) family FE003_15165 PF03143 Elongation factor Tu C-terminal domain FE003_15165 PF03144 Elongation factor Tu domain 2 FE003_15165 PF00009 Elongation factor Tu GTP binding domain FE003_15170 PF03144 Elongation factor Tu domain 2 FE003_15170 PF00009 Elongation factor Tu GTP binding domain FE003_15170 PF00679 Elongation factor G C-terminus FE003_15170 PF03764 Elongation factor G, domain IV FE003_15170 PF14492 Elongation Factor G, domain II FE003_15175 PF00177 Ribosomal protein S7p/S5e FE003_15180 PF00164 Ribosomal protein S12/S23 FE003_15190 PF00109 Beta-ketoacyl synthase, N-terminal domain FE003_15190 PF02801 Beta-ketoacyl synthase, C-terminal domain FE003_15200 PF02678 Pirin FE003_15200 PF05726 Pirin C-terminal cupin domain FE003_15210 PF02540 NAD synthase FE003_15210 PF00795 Carbon-nitrogen hydrolase FE003_15225 PF00111 2Fe-2S iron-sulfur cluster binding domain FE003_15225 PF00970 Oxidoreductase FAD-binding domain FE003_15225 PF00175 Oxidoreductase NAD-binding domain FE003_15230 PF00171 Aldehyde dehydrogenase family FE003_15235 PF00355 Rieske [2Fe-2S] domain FE003_15235 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FE003_15240 PF07859 alpha/beta hydrolase fold FE003_15245 PF02028 BCCT, betaine/carnitine/choline family transporter FE003_15250 PF00180 Isocitrate/isopropylmalate dehydrogenase FE003_15255 PF03466 LysR substrate binding domain FE003_15255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_15275 PF00037 4Fe-4S binding domain FE003_15280 PF01467 Cytidylyltransferase-like FE003_15285 PF01668 SmpB protein FE003_15290 PF03358 NADPH-dependent FMN reductase FE003_15300 PF01479 S4 domain FE003_15300 PF00849 RNA pseudouridylate synthase FE003_15305 PF13525 Outer membrane lipoprotein FE003_15310 PF10410 DnaB-helicase binding domain of primase FE003_15310 PF08278 DNA primase DnaG DnaB-binding FE003_15310 PF08275 DNA primase catalytic core, N-terminal domain FE003_15310 PF01807 CHC2 zinc finger FE003_15315 PF01488 Shikimate / quinate 5-dehydrogenase FE003_15315 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FE003_15315 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FE003_15325 PF03550 Outer membrane lipoprotein LolB FE003_15330 PF00288 GHMP kinases N terminal domain FE003_15330 PF08544 GHMP kinases C terminal FE003_15355 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FE003_15355 PF14572 Phosphoribosyl synthetase-associated domain FE003_15360 PF01386 Ribosomal L25p family FE003_15365 PF01195 Peptidyl-tRNA hydrolase FE003_15370 PF02261 Aspartate decarboxylase FE003_15385 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FE003_15395 PF03070 TENA/THI-4/PQQC family FE003_15395 PF02581 Thiamine monophosphate synthase FE003_15395 PF08543 Phosphomethylpyrimidine kinase FE003_15400 PF04972 BON domain FE003_15400 PF01476 LysM domain FE003_15405 PF00550 Phosphopantetheine attachment site FE003_15415 PF00698 Acyl transferase domain FE003_15420 PF01783 Ribosomal L32p protein family FE003_15425 PF02620 Large ribosomal RNA subunit accumulation protein YceD FE003_15430 PF04315 Elongation factor P hydroxylase FE003_15435 PF01300 Telomere recombination FE003_15440 PF02616 Segregation and condensation protein ScpA FE003_15445 PF04079 Segregation and condensation complex subunit ScpB FE003_15450 PF00849 RNA pseudouridylate synthase FE003_15450 PF01479 S4 domain FE003_15465 PF00155 Aminotransferase class I and II FE003_15470 PF00202 Aminotransferase class-III FE003_15470 PF06968 Biotin and Thiamin Synthesis associated domain FE003_15470 PF04055 Radical SAM superfamily FE003_15475 PF12697 Alpha/beta hydrolase family FE003_15475 PF08241 Methyltransferase domain FE003_15480 PF02358 Trehalose-phosphatase FE003_15485 PF00982 Glycosyltransferase family 20 FE003_15490 PF07690 Major Facilitator Superfamily FE003_15495 PF00210 Ferritin-like domain FE003_15500 PF01653 NAD-dependent DNA ligase adenylation domain FE003_15500 PF00533 BRCA1 C Terminus (BRCT) domain FE003_15500 PF12826 Helix-hairpin-helix motif FE003_15500 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FE003_15500 PF03120 NAD-dependent DNA ligase OB-fold domain FE003_15510 PF06470 SMC proteins Flexible Hinge Domain FE003_15510 PF02463 RecF/RecN/SMC N terminal domain FE003_15520 PF01925 Sulfite exporter TauE/SafE FE003_15530 PF03309 Type III pantothenate kinase FE003_15535 PF00448 SRP54-type protein, GTPase domain FE003_15535 PF02881 SRP54-type protein, helical bundle domain FE003_15535 PF02978 Signal peptide binding domain FE003_15545 PF01207 Dihydrouridine synthase (Dus) FE003_15580 PF00692 dUTPase FE003_15595 PF01048 Phosphorylase superfamily FE003_15605 PF10609 NUBPL iron-transfer P-loop NTPase FE003_15615 PF01588 Putative tRNA binding domain FE003_15615 PF09334 tRNA synthetases class I (M) FE003_15640 PF13533 Biotin-lipoyl like FE003_15645 PF00291 Pyridoxal-phosphate dependent enzyme FE003_15660 PF05552 Conserved TM helix FE003_15675 PF00175 Oxidoreductase NAD-binding domain FE003_15675 PF00970 Oxidoreductase FAD-binding domain FE003_15680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_15680 PF03466 LysR substrate binding domain FE003_15685 PF00313 'Cold-shock' DNA-binding domain FE003_15695 PF00361 Proton-conducting membrane transporter FE003_15700 PF00361 Proton-conducting membrane transporter FE003_15705 PF00361 Proton-conducting membrane transporter FE003_15705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FE003_15710 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FE003_15715 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FE003_15720 PF12838 4Fe-4S dicluster domain FE003_15725 PF00146 NADH dehydrogenase FE003_15730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FE003_15730 PF00384 Molybdopterin oxidoreductase FE003_15730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FE003_15735 PF10531 SLBB domain FE003_15735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FE003_15735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FE003_15745 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FE003_15745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FE003_15750 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FE003_15755 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FE003_15760 PF00990 Diguanylate cyclase, GGDEF domain FE003_15760 PF17151 Periplasmic sensor domain FE003_15770 PF00512 His Kinase A (phospho-acceptor) domain FE003_15770 PF00672 HAMP domain FE003_15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_15775 PF00486 Transcriptional regulatory protein, C terminal FE003_15775 PF00072 Response regulator receiver domain FE003_15785 PF03477 ATP cone domain FE003_15785 PF02867 Ribonucleotide reductase, barrel domain FE003_15785 PF00317 Ribonucleotide reductase, all-alpha domain FE003_15795 PF00268 Ribonucleotide reductase, small chain FE003_15810 PF00665 Integrase core domain FE003_15810 PF13936 Helix-turn-helix domain FE003_15815 PF01636 Phosphotransferase enzyme family FE003_15820 PF00665 Integrase core domain FE003_15820 PF13936 Helix-turn-helix domain FE003_15905 PF13360 PQQ-like domain FE003_15905 PF01011 PQQ enzyme repeat FE003_15925 PF02567 Phenazine biosynthesis-like protein FE003_15955 PF01613 Flavin reductase like domain FE003_15960 PF08267 Cobalamin-independent synthase, N-terminal domain FE003_15960 PF01717 Cobalamin-independent synthase, Catalytic domain FE003_15970 PF03466 LysR substrate binding domain FE003_15970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_15975 PF01810 LysE type translocator FE003_15985 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FE003_15985 PF12833 Helix-turn-helix domain FE003_15990 PF01546 Peptidase family M20/M25/M40 FE003_15990 PF07687 Peptidase dimerisation domain FE003_16000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_16000 PF03466 LysR substrate binding domain FE003_16010 PF07690 Major Facilitator Superfamily FE003_16020 PF03466 LysR substrate binding domain FE003_16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_16025 PF00890 FAD binding domain FE003_16025 PF14537 Cytochrome c3 FE003_16035 PF02515 CoA-transferase family III FE003_16040 PF07690 Major Facilitator Superfamily FE003_16045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_16045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_16045 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_16050 PF03466 LysR substrate binding domain FE003_16050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_16055 PF08240 Alcohol dehydrogenase GroES-like domain FE003_16055 PF00107 Zinc-binding dehydrogenase FE003_16060 PF00962 Adenosine/AMP deaminase FE003_16085 PF02445 Quinolinate synthetase A protein FE003_16090 PF01960 ArgJ family FE003_16095 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FE003_16095 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FE003_16100 PF00893 Small Multidrug Resistance protein FE003_16110 PF05275 Copper resistance protein B precursor (CopB) FE003_16115 PF00394 Multicopper oxidase FE003_16115 PF07731 Multicopper oxidase FE003_16115 PF07732 Multicopper oxidase FE003_16130 PF00834 Ribulose-phosphate 3 epimerase family FE003_16140 PF00756 Putative esterase FE003_16150 PF04445 Putative SAM-dependent methyltransferase FE003_16155 PF00814 Glycoprotease family FE003_16160 PF00132 Bacterial transferase hexapeptide (six repeats) FE003_16165 PF00293 NUDIX domain FE003_16205 PF00425 chorismate binding enzyme FE003_16205 PF04715 Anthranilate synthase component I, N terminal region FE003_16210 PF00155 Aminotransferase class I and II FE003_16215 PF00815 Histidinol dehydrogenase FE003_16220 PF01634 ATP phosphoribosyltransferase FE003_16225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FE003_16230 PF01722 BolA-like protein FE003_16240 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FE003_16245 PF04552 Sigma-54, DNA binding domain FE003_16245 PF04963 Sigma-54 factor, core binding domain FE003_16245 PF00309 Sigma-54 factor, Activator interacting domain (AID) FE003_16290 PF00795 Carbon-nitrogen hydrolase FE003_16300 PF01047 MarR family FE003_16305 PF02566 OsmC-like protein FE003_16310 PF00437 Type II/IV secretion system protein FE003_16330 PF01612 3'-5' exonuclease FE003_16330 PF01367 5'-3' exonuclease, C-terminal SAM fold FE003_16330 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FE003_16330 PF00476 DNA polymerase family A FE003_16335 PF02325 YGGT family FE003_16340 PF14748 Pyrroline-5-carboxylate reductase dimerisation FE003_16340 PF03807 NADP oxidoreductase coenzyme F420-dependent FE003_16345 PF01171 PP-loop family FE003_16345 PF11734 TilS substrate C-terminal domain FE003_16345 PF09179 TilS substrate binding domain FE003_16350 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FE003_16355 PF02541 Ppx/GppA phosphatase family FE003_16360 PF00085 Thioredoxin FE003_16365 PF07498 Rho termination factor, N-terminal domain FE003_16365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FE003_16365 PF07497 Rho termination factor, RNA-binding domain FE003_16380 PF00216 Bacterial DNA-binding protein FE003_16385 PF03147 Ferredoxin-fold anticodon binding domain FE003_16385 PF03484 tRNA synthetase B5 domain FE003_16385 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FE003_16385 PF03483 B3/4 domain FE003_16385 PF01588 Putative tRNA binding domain FE003_16390 PF01409 tRNA synthetases class II core domain (F) FE003_16390 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FE003_16410 PF00453 Ribosomal protein L20 FE003_16415 PF01632 Ribosomal protein L35 FE003_16420 PF07690 Major Facilitator Superfamily FE003_16425 PF09335 SNARE associated Golgi protein FE003_16430 PF02798 Glutathione S-transferase, N-terminal domain FE003_16430 PF00043 Glutathione S-transferase, C-terminal domain FE003_16440 PF05198 Translation initiation factor IF-3, N-terminal domain FE003_16440 PF00707 Translation initiation factor IF-3, C-terminal domain FE003_16445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FE003_16445 PF02824 TGS domain FE003_16445 PF03129 Anticodon binding domain FE003_16445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FE003_16450 PF13193 AMP-binding enzyme C-terminal domain FE003_16450 PF00501 AMP-binding enzyme FE003_16455 PF04751 Protein of unknown function (DUF615) FE003_16460 PF00381 PTS HPr component phosphorylation site FE003_16465 PF03668 P-loop ATPase protein family FE003_16470 PF02569 Pantoate-beta-alanine ligase FE003_16475 PF02548 Ketopantoate hydroxymethyltransferase FE003_16480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FE003_16485 PF01743 Poly A polymerase head domain FE003_16485 PF12626 Polymerase A arginine-rich C-terminus FE003_16485 PF12627 Probable RNA and SrmB- binding site of polymerase A FE003_16495 PF03819 MazG nucleotide pyrophosphohydrolase domain FE003_16505 PF02824 TGS domain FE003_16505 PF13291 ACT domain FE003_16505 PF04607 Region found in RelA / SpoT proteins FE003_16510 PF05958 tRNA (Uracil-5-)-methyltransferase FE003_16520 PF00291 Pyridoxal-phosphate dependent enzyme FE003_16525 PF00672 HAMP domain FE003_16525 PF00512 His Kinase A (phospho-acceptor) domain FE003_16525 PF00072 Response regulator receiver domain FE003_16525 PF01627 Hpt domain FE003_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_16525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FE003_16530 PF00378 Enoyl-CoA hydratase/isomerase FE003_16535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FE003_16535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FE003_16540 PF01261 Xylose isomerase-like TIM barrel FE003_16550 PF00106 short chain dehydrogenase FE003_16555 PF02233 NAD(P) transhydrogenase beta subunit FE003_16560 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FE003_16565 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FE003_16565 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FE003_16570 PF00892 EamA-like transporter family FE003_16580 PF07690 Major Facilitator Superfamily FE003_16585 PF01207 Dihydrouridine synthase (Dus) FE003_16595 PF03466 LysR substrate binding domain FE003_16595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_16605 PF00899 ThiF family FE003_16615 PF00694 Aconitase C-terminal domain FE003_16615 PF00330 Aconitase family (aconitate hydratase) FE003_16620 PF01026 TatD related DNase FE003_16635 PF00009 Elongation factor Tu GTP binding domain FE003_16635 PF03144 Elongation factor Tu domain 2 FE003_16635 PF16658 Class II release factor RF3, C-terminal domain FE003_16660 PF03707 Bacterial signalling protein N terminal repeat FE003_16660 PF00990 Diguanylate cyclase, GGDEF domain FE003_16660 PF00563 EAL domain FE003_16665 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FE003_16665 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FE003_16670 PF10369 Small subunit of acetolactate synthase FE003_16675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FE003_16675 PF00205 Thiamine pyrophosphate enzyme, central domain FE003_16675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FE003_16685 PF09334 tRNA synthetases class I (M) FE003_16685 PF00133 tRNA synthetases class I (I, L, M and V) FE003_16685 PF08264 Anticodon-binding domain of tRNA FE003_16685 PF13603 Leucyl-tRNA synthetase, Domain 2 FE003_16700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FE003_16705 PF02687 FtsX-like permease family FE003_16705 PF12704 MacB-like periplasmic core domain FE003_16705 PF00005 ABC transporter FE003_16710 PF02321 Outer membrane efflux protein FE003_16725 PF00929 Exonuclease FE003_16730 PF03193 RsgA GTPase FE003_16740 PF00462 Glutaredoxin FE003_16745 PF02556 Preprotein translocase subunit SecB FE003_16760 PF02801 Beta-ketoacyl synthase, C-terminal domain FE003_16760 PF00109 Beta-ketoacyl synthase, N-terminal domain FE003_16775 PF02801 Beta-ketoacyl synthase, C-terminal domain FE003_16775 PF00109 Beta-ketoacyl synthase, N-terminal domain FE003_16785 PF04820 Tryptophan halogenase FE003_16805 PF00221 Aromatic amino acid lyase FE003_16820 PF13193 AMP-binding enzyme C-terminal domain FE003_16820 PF00501 AMP-binding enzyme FE003_16835 PF00550 Phosphopantetheine attachment site FE003_16840 PF00550 Phosphopantetheine attachment site FE003_16855 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FE003_16855 PF01926 50S ribosome-binding GTPase FE003_16860 PF13360 PQQ-like domain FE003_16870 PF03129 Anticodon binding domain FE003_16870 PF13393 Histidyl-tRNA synthetase FE003_16875 PF04551 GcpE protein FE003_16880 PF13464 Domain of unknown function (DUF4115) FE003_16890 PF04055 Radical SAM superfamily FE003_16895 PF00334 Nucleoside diphosphate kinase FE003_16900 PF04384 Iron-sulphur cluster assembly FE003_16920 PF00534 Glycosyl transferases group 1 FE003_16920 PF13439 Glycosyltransferase Family 4 FE003_16925 PF00595 PDZ domain FE003_16925 PF03572 Peptidase family S41 FE003_16925 PF17804 Tail specific protease N-terminal domain FE003_16925 PF11818 C-terminal domain of tail specific protease (DUF3340) FE003_16930 PF00933 Glycosyl hydrolase family 3 N terminal domain FE003_16940 PF00561 alpha/beta hydrolase fold FE003_16945 PF00171 Aldehyde dehydrogenase family FE003_16950 PF00171 Aldehyde dehydrogenase family FE003_16955 PF01202 Shikimate kinase FE003_16960 PF02447 GntP family permease FE003_16965 PF01081 KDPG and KHG aldolase FE003_16970 PF00920 Dehydratase family FE003_16975 PF00871 Acetokinase family FE003_16980 PF01515 Phosphate acetyl/butaryl transferase FE003_16980 PF07085 DRTGG domain FE003_16985 PF05681 Fumarate hydratase (Fumerase) FE003_16985 PF05683 Fumarase C-terminus FE003_17000 PF07724 AAA domain (Cdc48 subfamily) FE003_17000 PF06689 ClpX C4-type zinc finger FE003_17000 PF10431 C-terminal, D2-small domain, of ClpB protein FE003_17005 PF00574 Clp protease FE003_17010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FE003_17010 PF05698 Bacterial trigger factor protein (TF) C-terminus FE003_17010 PF05697 Bacterial trigger factor protein (TF) FE003_17015 PF00593 TonB dependent receptor FE003_17015 PF07715 TonB-dependent Receptor Plug Domain FE003_17020 PF13640 2OG-Fe(II) oxygenase superfamily FE003_17020 PF18331 PKHD-type hydroxylase C-terminal domain FE003_17025 PF08502 LeuA allosteric (dimerisation) domain FE003_17025 PF00682 HMGL-like FE003_17030 PF00561 alpha/beta hydrolase fold FE003_17035 PF00561 alpha/beta hydrolase fold FE003_17035 PF07021 Methionine biosynthesis protein MetW FE003_17045 PF01725 Ham1 family FE003_17055 PF02416 mttA/Hcf106 family FE003_17060 PF02416 mttA/Hcf106 family FE003_17065 PF00902 Sec-independent protein translocase protein (TatC) FE003_17085 PF01790 Prolipoprotein diacylglyceryl transferase FE003_17100 PF00303 Thymidylate synthase FE003_17105 PF00186 Dihydrofolate reductase FE003_17115 PF01625 Peptide methionine sulfoxide reductase FE003_17125 PF01618 MotA/TolQ/ExbB proton channel family FE003_17135 PF00551 Formyl transferase FE003_17135 PF01842 ACT domain FE003_17145 PF00171 Aldehyde dehydrogenase family FE003_17150 PF00830 Ribosomal L28 family FE003_17155 PF00471 Ribosomal protein L33 FE003_17160 PF00999 Sodium/hydrogen exchanger family FE003_17160 PF02254 TrkA-N domain FE003_17180 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FE003_17185 PF13361 UvrD-like helicase C-terminal domain FE003_17185 PF00580 UvrD/REP helicase N-terminal domain FE003_17200 PF01396 Topoisomerase DNA binding C4 zinc finger FE003_17200 PF01131 DNA topoisomerase FE003_17200 PF01751 Toprim domain FE003_17200 PF08272 Topoisomerase I zinc-ribbon-like FE003_17210 PF01638 HxlR-like helix-turn-helix FE003_17215 PF00107 Zinc-binding dehydrogenase FE003_17215 PF08240 Alcohol dehydrogenase GroES-like domain FE003_17230 PF01810 LysE type translocator FE003_17235 PF03279 Bacterial lipid A biosynthesis acyltransferase FE003_17245 PF00375 Sodium:dicarboxylate symporter family FE003_17255 PF01118 Semialdehyde dehydrogenase, NAD binding domain FE003_17255 PF02774 Semialdehyde dehydrogenase, dimerisation domain FE003_17275 PF01416 tRNA pseudouridine synthase FE003_17285 PF01176 Translation initiation factor 1A / IF-1 FE003_17300 PF00180 Isocitrate/isopropylmalate dehydrogenase FE003_17310 PF00694 Aconitase C-terminal domain FE003_17315 PF00330 Aconitase family (aconitate hydratase) FE003_17325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_17325 PF03466 LysR substrate binding domain FE003_17345 PF00293 NUDIX domain FE003_17350 PF05524 PEP-utilising enzyme, N-terminal FE003_17350 PF00391 PEP-utilising enzyme, mobile domain FE003_17350 PF02896 PEP-utilising enzyme, TIM barrel domain FE003_17350 PF01590 GAF domain FE003_17355 PF00141 Peroxidase FE003_17360 PF12706 Beta-lactamase superfamily domain FE003_17365 PF03466 LysR substrate binding domain FE003_17365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_17375 PF02798 Glutathione S-transferase, N-terminal domain FE003_17380 PF08279 HTH domain FE003_17380 PF13280 WYL domain FE003_17385 PF13419 Haloacid dehalogenase-like hydrolase FE003_17390 PF01479 S4 domain FE003_17390 PF00849 RNA pseudouridylate synthase FE003_17400 PF00575 S1 RNA binding domain FE003_17400 PF10150 Ribonuclease E/G family FE003_17400 PF12111 Polyribonucleotide phosphorylase C terminal FE003_17405 PF13193 AMP-binding enzyme C-terminal domain FE003_17405 PF00501 AMP-binding enzyme FE003_17420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FE003_17420 PF03466 LysR substrate binding domain FE003_17425 PF00106 short chain dehydrogenase FE003_17430 PF06969 HemN C-terminal domain FE003_17430 PF04055 Radical SAM superfamily FE003_17440 PF01554 MatE FE003_17445 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FE003_17445 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_17445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_17450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_17450 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FE003_17455 PF03109 ABC1 family FE003_17460 PF01197 Ribosomal protein L31 FE003_17475 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FE003_17495 PF03884 DNA gyrase inhibitor YacG FE003_17500 PF00753 Metallo-beta-lactamase superfamily FE003_17505 PF00762 Ferrochelatase FE003_17515 PF01177 Asp/Glu/Hydantoin racemase FE003_17530 PF01206 Sulfurtransferase TusA FE003_17535 PF00571 CBS domain FE003_17535 PF03471 Transporter associated domain FE003_17540 PF00795 Carbon-nitrogen hydrolase FE003_17545 PF01588 Putative tRNA binding domain FE003_17555 PF07963 Prokaryotic N-terminal methylation motif FE003_17555 PF08334 Type II secretion system (T2SS), protein G FE003_17560 PF00482 Type II secretion system (T2SS), protein F FE003_17565 PF17764 3′ DNA-binding domain (3′BD) FE003_17565 PF18074 Primosomal protein N C-terminal domain FE003_17565 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FE003_17565 PF00271 Helicase conserved C-terminal domain FE003_17565 PF00270 DEAD/DEAH box helicase FE003_17570 PF02254 TrkA-N domain FE003_17570 PF00999 Sodium/hydrogen exchanger family FE003_17575 PF01430 Hsp33 protein FE003_17580 PF13936 Helix-turn-helix domain FE003_17580 PF00665 Integrase core domain FE003_17590 PF01556 DnaJ C terminal domain FE003_17590 PF00226 DnaJ domain FE003_17600 PF01544 CorA-like Mg2+ transporter protein FE003_17605 PF00013 KH domain FE003_17605 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FE003_17605 PF00575 S1 RNA binding domain FE003_17605 PF01138 3' exoribonuclease family, domain 1 FE003_17605 PF03725 3' exoribonuclease family, domain 2 FE003_17610 PF00312 Ribosomal protein S15 FE003_17620 PF13538 UvrD-like helicase C-terminal domain FE003_17625 PF13361 UvrD-like helicase C-terminal domain FE003_17625 PF12705 PD-(D/E)XK nuclease superfamily FE003_17625 PF00580 UvrD/REP helicase N-terminal domain FE003_17630 PF17946 RecC C-terminal domain FE003_17640 PF03976 Polyphosphate kinase 2 (PPK2) FE003_17650 PF01209 ubiE/COQ5 methyltransferase family FE003_17660 PF03109 ABC1 family FE003_17665 PF01494 FAD binding domain FE003_17670 PF01502 Phosphoribosyl-AMP cyclohydrolase FE003_17685 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FE003_17685 PF00361 Proton-conducting membrane transporter FE003_17685 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FE003_17685 PF13244 Domain of unknown function (DUF4040) FE003_17690 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FE003_17695 PF00361 Proton-conducting membrane transporter FE003_17705 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FE003_17715 PF02033 Ribosome-binding factor A FE003_17720 PF08364 Bacterial translation initiation factor IF-2 associated region FE003_17720 PF00009 Elongation factor Tu GTP binding domain FE003_17720 PF11987 Translation-initiation factor 2 FE003_17720 PF04760 Translation initiation factor IF-2, N-terminal region FE003_17725 PF13184 NusA-like KH domain FE003_17725 PF00575 S1 RNA binding domain FE003_17725 PF08529 NusA N-terminal domain FE003_17730 PF17384 RimP C-terminal SH3 domain FE003_17730 PF02576 RimP N-terminal domain FE003_17750 PF03840 Preprotein translocase SecG subunit FE003_17755 PF00121 Triosephosphate isomerase FE003_17760 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FE003_17760 PF00437 Type II/IV secretion system protein FE003_17765 PF00482 Type II secretion system (T2SS), protein F FE003_17770 PF01478 Type IV leader peptidase family FE003_17770 PF06750 Bacterial Peptidase A24 N-terminal domain FE003_17775 PF01121 Dephospho-CoA kinase FE003_17785 PF08032 RNA 2'-O ribose methyltransferase substrate binding FE003_17785 PF00588 SpoU rRNA Methylase family FE003_17790 PF06865 Pyrimidine/purine nucleoside phosphorylase FE003_17800 PF02463 RecF/RecN/SMC N terminal domain FE003_17805 PF02622 Uncharacterized ACR, COG1678 FE003_17810 PF03652 Holliday junction resolvase FE003_17815 PF13533 Biotin-lipoyl like FE003_17840 PF12833 Helix-turn-helix domain FE003_17840 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FE003_17840 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FE003_17840 PF02805 Metal binding domain of Ada FE003_17845 PF01066 CDP-alcohol phosphatidyltransferase FE003_17855 PF02151 UvrB/uvrC motif FE003_17855 PF08459 UvrC Helix-hairpin-helix N-terminal FE003_17855 PF01541 GIY-YIG catalytic domain FE003_17880 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FE003_17880 PF00378 Enoyl-CoA hydratase/isomerase FE003_17880 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FE003_17885 PF02803 Thiolase, C-terminal domain FE003_17885 PF00108 Thiolase, N-terminal domain FE003_17905 PF09278 MerR, DNA binding FE003_17905 PF00376 MerR family regulatory protein FE003_17915 PF01323 DSBA-like thioredoxin domain FE003_17930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_17930 PF00183 Hsp90 protein FE003_17945 PF03553 Na+/H+ antiporter family FE003_17945 PF13726 Na+-H+ antiporter family FE003_17950 PF00561 alpha/beta hydrolase fold FE003_17980 PF05000 RNA polymerase Rpb1, domain 4 FE003_17980 PF00623 RNA polymerase Rpb1, domain 2 FE003_17980 PF04997 RNA polymerase Rpb1, domain 1 FE003_17980 PF04998 RNA polymerase Rpb1, domain 5 FE003_17980 PF04983 RNA polymerase Rpb1, domain 3 FE003_17985 PF00562 RNA polymerase Rpb2, domain 6 FE003_17985 PF04560 RNA polymerase Rpb2, domain 7 FE003_17985 PF04565 RNA polymerase Rpb2, domain 3 FE003_17985 PF04561 RNA polymerase Rpb2, domain 2 FE003_17985 PF10385 RNA polymerase beta subunit external 1 domain FE003_17985 PF04563 RNA polymerase beta subunit FE003_17990 PF00542 Ribosomal protein L7/L12 C-terminal domain FE003_17990 PF16320 Ribosomal protein L7/L12 dimerisation domain FE003_17995 PF00466 Ribosomal protein L10 FE003_18000 PF00687 Ribosomal protein L1p/L10e family FE003_18005 PF03946 Ribosomal protein L11, N-terminal domain FE003_18005 PF00298 Ribosomal protein L11, RNA binding domain FE003_18010 PF00467 KOW motif FE003_18010 PF02357 Transcription termination factor nusG FE003_18015 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FE003_18025 PF03143 Elongation factor Tu C-terminal domain FE003_18025 PF00009 Elongation factor Tu GTP binding domain FE003_18025 PF03144 Elongation factor Tu domain 2 FE003_18050 PF00425 chorismate binding enzyme FE003_18050 PF04715 Anthranilate synthase component I, N terminal region FE003_18055 PF13419 Haloacid dehalogenase-like hydrolase FE003_18060 PF12401 Protein of unknown function (DUF2662) FE003_18060 PF00498 FHA domain FE003_18065 PF03958 Bacterial type II/III secretion system short domain FE003_18065 PF00263 Bacterial type II and III secretion system protein FE003_18080 PF00816 H-NS histone family FE003_18105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FE003_18105 PF03900 Porphobilinogen deaminase, C-terminal domain FE003_18110 PF00072 Response regulator receiver domain FE003_18110 PF04397 LytTr DNA-binding domain FE003_18115 PF06580 Histidine kinase FE003_18115 PF07694 5TMR of 5TMR-LYT FE003_18115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_18120 PF00206 Lyase FE003_18120 PF14698 Argininosuccinate lyase C-terminal FE003_18125 PF04362 Bacterial Fe(2+) trafficking FE003_18130 PF01895 PhoU domain FE003_18135 PF02321 Outer membrane efflux protein FE003_18140 PF00892 EamA-like transporter family FE003_18155 PF13667 ThiC-associated domain FE003_18155 PF01964 Radical SAM ThiC family FE003_18160 PF00293 NUDIX domain FE003_18165 PF00149 Calcineurin-like phosphoesterase FE003_18170 PF01258 Prokaryotic dksA/traR C4-type zinc finger FE003_18175 PF00749 tRNA synthetases class I (E and Q), catalytic domain FE003_18180 PF01098 Cell cycle protein FE003_18185 PF02875 Mur ligase family, glutamate ligase domain FE003_18185 PF08245 Mur ligase middle domain FE003_18195 PF07664 Ferrous iron transport protein B C terminus FE003_18195 PF07670 Nucleoside recognition FE003_18195 PF02421 Ferrous iron transport protein B FE003_18205 PF02899 Phage integrase, N-terminal SAM-like domain FE003_18205 PF00589 Phage integrase family FE003_18210 PF10411 Disulfide bond isomerase protein N-terminus FE003_18210 PF13098 Thioredoxin-like domain FE003_18215 PF03447 Homoserine dehydrogenase, NAD binding domain FE003_18215 PF01842 ACT domain FE003_18215 PF00742 Homoserine dehydrogenase FE003_18220 PF00291 Pyridoxal-phosphate dependent enzyme FE003_18225 PF00768 D-alanyl-D-alanine carboxypeptidase FE003_18230 PF00072 Response regulator receiver domain FE003_18230 PF00196 Bacterial regulatory proteins, luxR family FE003_18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FE003_18235 PF00512 His Kinase A (phospho-acceptor) domain FE003_18240 PF00072 Response regulator receiver domain FE003_18240 PF02954 Bacterial regulatory protein, Fis family FE003_18240 PF00158 Sigma-54 interaction domain FE003_18245 PF03572 Peptidase family S41 FE003_18245 PF00595 PDZ domain FE003_18250 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FE003_18250 PF01676 Metalloenzyme superfamily FE003_18255 PF03739 Lipopolysaccharide export system permease LptF/LptG FE003_18265 PF02789 Cytosol aminopeptidase family, N-terminal domain FE003_18265 PF00883 Cytosol aminopeptidase family, catalytic domain FE003_18285 PF00677 Lumazine binding domain FE003_18295 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FE003_18295 PF01872 RibD C-terminal domain FE003_18300 PF03477 ATP cone domain FE003_18305 PF00909 Ammonium Transporter Family FE003_18310 PF00543 Nitrogen regulatory protein P-II FE003_18320 PF01078 Magnesium chelatase, subunit ChlI FE003_18320 PF13335 Magnesium chelatase, subunit ChlI C-terminal FE003_18330 PF01636 Phosphotransferase enzyme family FE003_18335 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase FE003_18360 PF02909 Tetracyclin repressor-like, C-terminal domain FE003_18360 PF00440 Bacterial regulatory proteins, tetR family FE003_18365 PF07690 Major Facilitator Superfamily FE003_18375 PF01740 STAS domain FE003_18375 PF00916 Sulfate permease family FE003_18380 PF00582 Universal stress protein family FE003_18410 PF00665 Integrase core domain FE003_18420 PF13335 Magnesium chelatase, subunit ChlI C-terminal FE003_18420 PF01078 Magnesium chelatase, subunit ChlI FE003_18425 PF00155 Aminotransferase class I and II FE003_18425 PF00392 Bacterial regulatory proteins, gntR family FE003_18435 PF00701 Dihydrodipicolinate synthetase family FE003_18445 PF03573 outer membrane porin, OprD family FE003_18450 PF00719 Inorganic pyrophosphatase FE003_18465 PF13193 AMP-binding enzyme C-terminal domain FE003_18465 PF00501 AMP-binding enzyme FE003_18470 PF00521 DNA gyrase/topoisomerase IV, subunit A FE003_18470 PF03989 DNA gyrase C-terminal domain, beta-propeller FE003_18475 PF07690 Major Facilitator Superfamily FE003_18480 PF03458 UPF0126 domain FE003_18485 PF02810 SEC-C motif FE003_18490 PF03741 Integral membrane protein TerC family FE003_18490 PF03471 Transporter associated domain FE003_18495 PF03641 Possible lysine decarboxylase FE003_18500 PF07690 Major Facilitator Superfamily FE003_18510 PF00817 impB/mucB/samB family FE003_18510 PF11799 impB/mucB/samB family C-terminal domain FE003_18510 PF11798 IMS family HHH motif FE003_18525 PF08497 Radical SAM N-terminal FE003_18525 PF11842 Domain of unknown function (DUF3362) FE003_18525 PF04055 Radical SAM superfamily FE003_18545 PF03358 NADPH-dependent FMN reductase FE003_18555 PF00291 Pyridoxal-phosphate dependent enzyme FE003_18590 PF00440 Bacterial regulatory proteins, tetR family FE003_18615 PF01327 Polypeptide deformylase FE003_18625 PF02481 DNA recombination-mediator protein A FE003_18625 PF17782 DprA winged helix domain FE003_18630 PF01300 Telomere recombination FE003_18635 PF00892 EamA-like transporter family FE003_18640 PF00440 Bacterial regulatory proteins, tetR family FE003_18645 PF07690 Major Facilitator Superfamily FE003_18655 PF00255 Glutathione peroxidase FE003_18665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FE003_18670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FE003_18670 PF02874 ATP synthase alpha/beta family, beta-barrel domain FE003_18675 PF00231 ATP synthase FE003_18680 PF00306 ATP synthase alpha/beta chain, C terminal domain FE003_18680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FE003_18680 PF02874 ATP synthase alpha/beta family, beta-barrel domain FE003_18685 PF00213 ATP synthase delta (OSCP) subunit FE003_18690 PF00430 ATP synthase B/B' CF(0) FE003_18695 PF00137 ATP synthase subunit C FE003_18700 PF00119 ATP synthase A chain FE003_18720 PF00005 ABC transporter FE003_18725 PF00950 ABC 3 transport family FE003_18730 PF01810 LysE type translocator FE003_18735 PF04261 Dyp-type peroxidase family FE003_18745 PF03949 Malic enzyme, NAD binding domain FE003_18745 PF00390 Malic enzyme, N-terminal domain FE003_18750 PF00750 tRNA synthetases class I (R) FE003_18750 PF05746 DALR anticodon binding domain FE003_18750 PF03485 Arginyl tRNA synthetase N terminal domain FE003_18770 PF05726 Pirin C-terminal cupin domain FE003_18770 PF02678 Pirin FE003_18780 PF03551 Transcriptional regulator PadR-like family FE003_18785 PF01909 Nucleotidyltransferase domain FE003_18785 PF13427 Domain of unknown function (DUF4111) FE003_18790 PF02540 NAD synthase FE003_18790 PF00958 GMP synthase C terminal domain FE003_18790 PF00117 Glutamine amidotransferase class-I FE003_18795 PF04286 Protein of unknown function (DUF445) FE003_18800 PF07681 DoxX FE003_18805 PF09335 SNARE associated Golgi protein FE003_18820 PF13614 AAA domain FE003_18830 PF01722 BolA-like protein FE003_18845 PF01648 4'-phosphopantetheinyl transferase superfamily FE003_18850 PF12697 Alpha/beta hydrolase family FE003_18870 PF16197 Ketoacyl-synthetase C-terminal extension FE003_18870 PF00550 Phosphopantetheine attachment site FE003_18870 PF08242 Methyltransferase domain FE003_18870 PF00109 Beta-ketoacyl synthase, N-terminal domain FE003_18870 PF14765 Polyketide synthase dehydratase FE003_18870 PF00975 Thioesterase domain FE003_18870 PF02801 Beta-ketoacyl synthase, C-terminal domain FE003_18875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_18875 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_18875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_18880 PF00501 AMP-binding enzyme FE003_18885 PF00196 Bacterial regulatory proteins, luxR family FE003_18885 PF03472 Autoinducer binding domain FE003_18895 PF00765 Autoinducer synthase FE003_18900 PF07690 Major Facilitator Superfamily FE003_18900 PF00083 Sugar (and other) transporter FE003_18905 PF00378 Enoyl-CoA hydratase/isomerase FE003_18910 PF00378 Enoyl-CoA hydratase/isomerase FE003_18915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FE003_18915 PF02770 Acyl-CoA dehydrogenase, middle domain FE003_18915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FE003_18920 PF00501 AMP-binding enzyme FE003_18920 PF13193 AMP-binding enzyme C-terminal domain FE003_18925 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FE003_18925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FE003_18930 PF00171 Aldehyde dehydrogenase family FE003_18940 PF00324 Amino acid permease FE003_18945 PF00324 Amino acid permease FE003_18950 PF01042 Endoribonuclease L-PSP FE003_18955 PF01168 Alanine racemase, N-terminal domain FE003_18955 PF00842 Alanine racemase, C-terminal domain FE003_18960 PF01266 FAD dependent oxidoreductase FE003_18965 PF01037 Lrp/AsnC ligand binding domain FE003_18975 PF00593 TonB dependent receptor FE003_18975 PF07715 TonB-dependent Receptor Plug Domain FE003_18990 PF00849 RNA pseudouridylate synthase FE003_19005 PF00440 Bacterial regulatory proteins, tetR family FE003_19005 PF08361 MAATS-type transcriptional repressor, C-terminal region FE003_19015 PF02801 Beta-ketoacyl synthase, C-terminal domain FE003_19015 PF00109 Beta-ketoacyl synthase, N-terminal domain FE003_19055 PF00330 Aconitase family (aconitate hydratase) FE003_19055 PF00694 Aconitase C-terminal domain FE003_19060 PF00285 Citrate synthase, C-terminal domain FE003_19070 PF07729 FCD domain FE003_19070 PF00392 Bacterial regulatory proteins, gntR family FE003_19080 PF00155 Aminotransferase class I and II FE003_19085 PF09330 D-lactate dehydrogenase, membrane binding FE003_19085 PF01565 FAD binding domain FE003_19090 PF01070 FMN-dependent dehydrogenase FE003_19095 PF00392 Bacterial regulatory proteins, gntR family FE003_19095 PF07729 FCD domain FE003_19100 PF02652 L-lactate permease FE003_19105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FE003_19105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FE003_19105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FE003_19105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FE003_19110 PF16363 GDP-mannose 4,6 dehydratase FE003_19115 PF00342 Phosphoglucose isomerase FE003_19120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FE003_19120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FE003_19120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FE003_19125 PF00483 Nucleotidyl transferase FE003_19130 PF02397 Bacterial sugar transferase FE003_19135 PF00535 Glycosyl transferase family 2 FE003_19165 PF03102 NeuB family FE003_19165 PF08666 SAF domain FE003_19180 PF02348 Cytidylyltransferase FE003_19185 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FE003_19190 PF02719 Polysaccharide biosynthesis protein FE003_19195 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FE003_19195 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FE003_19195 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FE003_19200 PF10531 SLBB domain FE003_19200 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FE003_19200 PF02563 Polysaccharide biosynthesis/export protein FE003_19205 PF01451 Low molecular weight phosphotyrosine protein phosphatase FE003_19210 PF02706 Chain length determinant protein FE003_19210 PF13807 G-rich domain on putative tyrosine kinase FE003_19210 PF13614 AAA domain FE003_19215 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FE003_19215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FE003_19220 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FE003_19220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FE003_19225 PF03023 Lipid II flippase MurJ FE003_19230 PF01510 N-acetylmuramoyl-L-alanine amidase FE003_19235 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FE003_19235 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FE003_19250 PF01138 3' exoribonuclease family, domain 1 FE003_19250 PF03725 3' exoribonuclease family, domain 2 FE003_19255 PF00487 Fatty acid desaturase FE003_19260 PF00175 Oxidoreductase NAD-binding domain FE003_19265 PF00440 Bacterial regulatory proteins, tetR family FE003_19270 PF00440 Bacterial regulatory proteins, tetR family FE003_19270 PF08360 QacR-like protein, C-terminal region FE003_19275 PF01323 DSBA-like thioredoxin domain FE003_19285 PF13419 Haloacid dehalogenase-like hydrolase FE003_19290 PF00106 short chain dehydrogenase FE003_19305 PF00583 Acetyltransferase (GNAT) family FE003_19305 PF00696 Amino acid kinase family FE003_19310 PF09084 NMT1/THI5 like FE003_19315 PF09084 NMT1/THI5 like FE003_19320 PF00296 Luciferase-like monooxygenase FE003_19325 PF00528 Binding-protein-dependent transport system inner membrane component FE003_19330 PF00005 ABC transporter FE003_19335 PF08362 YcdC-like protein, C-terminal region FE003_19335 PF00440 Bacterial regulatory proteins, tetR family FE003_19340 PF01048 Phosphorylase superfamily FE003_19350 PF01687 Riboflavin kinase FE003_19350 PF06574 FAD synthetase FE003_19355 PF00133 tRNA synthetases class I (I, L, M and V) FE003_19355 PF06827 Zinc finger found in FPG and IleRS FE003_19355 PF08264 Anticodon-binding domain of tRNA FE003_19360 PF01252 Signal peptidase (SPase) II FE003_19365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FE003_19405 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FE003_19410 PF07859 alpha/beta hydrolase fold FE003_19435 PF01025 GrpE FE003_19440 PF00012 Hsp70 protein FE003_19460 PF13406 Transglycosylase SLT domain FE003_19465 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FE003_19465 PF02222 ATP-grasp domain FE003_19470 PF00731 AIR carboxylase FE003_19485 PF02875 Mur ligase family, glutamate ligase domain FE003_19485 PF01225 Mur ligase family, catalytic domain FE003_19485 PF08245 Mur ligase middle domain FE003_19495 PF01569 PAP2 superfamily FE003_19500 PF03741 Integral membrane protein TerC family FE003_19510 PF03738 Glutathionylspermidine synthase preATP-grasp FE003_19515 PF00355 Rieske [2Fe-2S] domain FE003_19520 PF01979 Amidohydrolase family FE003_19525 PF00156 Phosphoribosyl transferase domain FE003_19535 PF10411 Disulfide bond isomerase protein N-terminus FE003_19535 PF13098 Thioredoxin-like domain FE003_19540 PF16916 Dimerisation domain of Zinc Transporter FE003_19540 PF01545 Cation efflux family FE003_19545 PF02583 Metal-sensitive transcriptional repressor FE003_19550 PF12631 MnmE helical domain FE003_19550 PF01926 50S ribosome-binding GTPase FE003_19550 PF10396 GTP-binding protein TrmE N-terminus FE003_19555 PF02096 60Kd inner membrane protein FE003_19555 PF14849 YidC periplasmic domain FE003_19560 PF01809 Putative membrane protein insertion efficiency factor FE003_19565 PF00825 Ribonuclease P FE003_19570 PF00468 Ribosomal protein L34 FE003_19610 PF00929 Exonuclease FE003_19665 PF13610 DDE domain FE003_19675 PF01636 Phosphotransferase enzyme family FE003_19680 PF13610 DDE domain FE003_19735 PF00692 dUTPase FE003_19760 PF00268 Ribonucleotide reductase, small chain FE003_19765 PF03477 ATP cone domain FE003_19765 PF02867 Ribonucleotide reductase, barrel domain FE003_19765 PF00317 Ribonucleotide reductase, all-alpha domain FE003_19790 PF13476 AAA domain FE003_19835 PF00154 recA bacterial DNA recombination protein FE003_19855 PF14579 Helix-hairpin-helix motif FE003_19855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FE003_19855 PF07733 Bacterial DNA polymerase III alpha NTPase domain FE003_19855 PF02811 PHP domain FE003_19890 PF00589 Phage integrase family FE003_19890 PF02899 Phage integrase, N-terminal SAM-like domain FE003_19915 PF00625 Guanylate kinase FE003_19955 PF10410 DnaB-helicase binding domain of primase FE003_19955 PF08275 DNA primase catalytic core, N-terminal domain FE003_19955 PF01807 CHC2 zinc finger FE003_20005 PF00877 NlpC/P60 family FE003_20115 PF09383 NIL domain FE003_20115 PF00005 ABC transporter FE003_20120 PF02195 ParB-like nuclease domain FE003_20230 PF01051 Initiator Replication protein FE003_20255 PF00593 TonB dependent receptor FE003_20255 PF07715 TonB-dependent Receptor Plug Domain FE003_20265 PF00665 Integrase core domain FE003_20265 PF13936 Helix-turn-helix domain