locus-tag class description NLHDIDDJ_00002 PF03702 Anhydro-N-acetylmuramic acid kinase NLHDIDDJ_00003 PF00561 alpha/beta hydrolase fold NLHDIDDJ_00004 PF01521 Iron-sulphur cluster biosynthesis NLHDIDDJ_00008 PF00005 ABC transporter NLHDIDDJ_00008 PF12848 ABC transporter NLHDIDDJ_00009 PF09335 SNARE associated Golgi protein NLHDIDDJ_00011 PF00204 DNA gyrase B NLHDIDDJ_00011 PF00986 DNA gyrase B subunit, carboxyl terminus NLHDIDDJ_00011 PF18053 DNA gyrase B subunit insert domain NLHDIDDJ_00011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_00011 PF01751 Toprim domain NLHDIDDJ_00012 PF02463 RecF/RecN/SMC N terminal domain NLHDIDDJ_00013 PF02768 DNA polymerase III beta subunit, C-terminal domain NLHDIDDJ_00013 PF02767 DNA polymerase III beta subunit, central domain NLHDIDDJ_00013 PF00712 DNA polymerase III beta subunit, N-terminal domain NLHDIDDJ_00014 PF00308 Bacterial dnaA protein NLHDIDDJ_00014 PF08299 Bacterial dnaA protein helix-turn-helix NLHDIDDJ_00014 PF11638 DnaA N-terminal domain NLHDIDDJ_00015 PF00468 Ribosomal protein L34 NLHDIDDJ_00016 PF00825 Ribonuclease P NLHDIDDJ_00017 PF01809 Putative membrane protein insertion efficiency factor NLHDIDDJ_00018 PF02096 60Kd inner membrane protein NLHDIDDJ_00018 PF14849 YidC periplasmic domain NLHDIDDJ_00019 PF01926 50S ribosome-binding GTPase NLHDIDDJ_00019 PF12631 MnmE helical domain NLHDIDDJ_00019 PF10396 GTP-binding protein TrmE N-terminus NLHDIDDJ_00020 PF02583 Metal-sensitive transcriptional repressor NLHDIDDJ_00021 PF01545 Cation efflux family NLHDIDDJ_00021 PF16916 Dimerisation domain of Zinc Transporter NLHDIDDJ_00022 PF10411 Disulfide bond isomerase protein N-terminus NLHDIDDJ_00022 PF13098 Thioredoxin-like domain NLHDIDDJ_00024 PF00156 Phosphoribosyl transferase domain NLHDIDDJ_00026 PF01979 Amidohydrolase family NLHDIDDJ_00028 PF00355 Rieske [2Fe-2S] domain NLHDIDDJ_00029 PF03738 Glutathionylspermidine synthase preATP-grasp NLHDIDDJ_00031 PF03741 Integral membrane protein TerC family NLHDIDDJ_00032 PF01569 PAP2 superfamily NLHDIDDJ_00034 PF02875 Mur ligase family, glutamate ligase domain NLHDIDDJ_00034 PF08245 Mur ligase middle domain NLHDIDDJ_00034 PF01225 Mur ligase family, catalytic domain NLHDIDDJ_00036 PF00731 AIR carboxylase NLHDIDDJ_00037 PF02222 ATP-grasp domain NLHDIDDJ_00037 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NLHDIDDJ_00038 PF13406 Transglycosylase SLT domain NLHDIDDJ_00042 PF00012 Hsp70 protein NLHDIDDJ_00043 PF01025 GrpE NLHDIDDJ_00044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00044 PF03466 LysR substrate binding domain NLHDIDDJ_00048 PF07859 alpha/beta hydrolase fold NLHDIDDJ_00049 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NLHDIDDJ_00056 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NLHDIDDJ_00057 PF01252 Signal peptidase (SPase) II NLHDIDDJ_00058 PF08264 Anticodon-binding domain of tRNA NLHDIDDJ_00058 PF00133 tRNA synthetases class I (I, L, M and V) NLHDIDDJ_00058 PF06827 Zinc finger found in FPG and IleRS NLHDIDDJ_00059 PF01687 Riboflavin kinase NLHDIDDJ_00059 PF06574 FAD synthetase NLHDIDDJ_00061 PF01048 Phosphorylase superfamily NLHDIDDJ_00062 PF08362 YcdC-like protein, C-terminal region NLHDIDDJ_00062 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_00063 PF00005 ABC transporter NLHDIDDJ_00064 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_00065 PF00296 Luciferase-like monooxygenase NLHDIDDJ_00066 PF09084 NMT1/THI5 like NLHDIDDJ_00067 PF09084 NMT1/THI5 like NLHDIDDJ_00068 PF00583 Acetyltransferase (GNAT) family NLHDIDDJ_00068 PF00696 Amino acid kinase family NLHDIDDJ_00071 PF00106 short chain dehydrogenase NLHDIDDJ_00072 PF13419 Haloacid dehalogenase-like hydrolase NLHDIDDJ_00074 PF01323 DSBA-like thioredoxin domain NLHDIDDJ_00075 PF08360 QacR-like protein, C-terminal region NLHDIDDJ_00075 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_00076 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_00077 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_00078 PF00487 Fatty acid desaturase NLHDIDDJ_00079 PF01138 3' exoribonuclease family, domain 1 NLHDIDDJ_00079 PF03725 3' exoribonuclease family, domain 2 NLHDIDDJ_00080 PF05506 Domain of unknown function (DUF756) NLHDIDDJ_00080 PF04185 Phosphoesterase family NLHDIDDJ_00082 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NLHDIDDJ_00082 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NLHDIDDJ_00083 PF01510 N-acetylmuramoyl-L-alanine amidase NLHDIDDJ_00084 PF03023 Lipid II flippase MurJ NLHDIDDJ_00085 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NLHDIDDJ_00085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NLHDIDDJ_00086 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NLHDIDDJ_00086 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NLHDIDDJ_00087 PF13614 AAA domain NLHDIDDJ_00087 PF13807 G-rich domain on putative tyrosine kinase NLHDIDDJ_00087 PF02706 Chain length determinant protein NLHDIDDJ_00088 PF01451 Low molecular weight phosphotyrosine protein phosphatase NLHDIDDJ_00089 PF10531 SLBB domain NLHDIDDJ_00089 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NLHDIDDJ_00089 PF02563 Polysaccharide biosynthesis/export protein NLHDIDDJ_00090 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NLHDIDDJ_00090 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NLHDIDDJ_00090 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NLHDIDDJ_00091 PF02719 Polysaccharide biosynthesis protein NLHDIDDJ_00092 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NLHDIDDJ_00093 PF02350 UDP-N-acetylglucosamine 2-epimerase NLHDIDDJ_00094 PF03102 NeuB family NLHDIDDJ_00094 PF08666 SAF domain NLHDIDDJ_00096 PF00483 Nucleotidyl transferase NLHDIDDJ_00097 PF02348 Cytidylyltransferase NLHDIDDJ_00098 PF01943 Polysaccharide biosynthesis protein NLHDIDDJ_00099 PF07922 Glycosyltransferase family 52 NLHDIDDJ_00102 PF02719 Polysaccharide biosynthesis protein NLHDIDDJ_00102 PF08485 Polysaccharide biosynthesis protein C-terminal NLHDIDDJ_00103 PF01370 NAD dependent epimerase/dehydratase family NLHDIDDJ_00104 PF02350 UDP-N-acetylglucosamine 2-epimerase NLHDIDDJ_00105 PF13579 Glycosyl transferase 4-like domain NLHDIDDJ_00106 PF01370 NAD dependent epimerase/dehydratase family NLHDIDDJ_00107 PF00953 Glycosyl transferase family 4 NLHDIDDJ_00108 PF02397 Bacterial sugar transferase NLHDIDDJ_00109 PF00483 Nucleotidyl transferase NLHDIDDJ_00110 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NLHDIDDJ_00110 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NLHDIDDJ_00110 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NLHDIDDJ_00111 PF00342 Phosphoglucose isomerase NLHDIDDJ_00112 PF16363 GDP-mannose 4,6 dehydratase NLHDIDDJ_00113 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NLHDIDDJ_00113 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NLHDIDDJ_00113 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NLHDIDDJ_00113 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NLHDIDDJ_00114 PF02652 L-lactate permease NLHDIDDJ_00115 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_00115 PF07729 FCD domain NLHDIDDJ_00116 PF01070 FMN-dependent dehydrogenase NLHDIDDJ_00117 PF09330 D-lactate dehydrogenase, membrane binding NLHDIDDJ_00117 PF01565 FAD binding domain NLHDIDDJ_00118 PF00155 Aminotransferase class I and II NLHDIDDJ_00119 PF07729 FCD domain NLHDIDDJ_00119 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_00121 PF00285 Citrate synthase, C-terminal domain NLHDIDDJ_00122 PF00330 Aconitase family (aconitate hydratase) NLHDIDDJ_00122 PF00694 Aconitase C-terminal domain NLHDIDDJ_00128 PF13296 Putative type VI secretion system Rhs element Vgr NLHDIDDJ_00128 PF04717 Type VI secretion system, phage-baseplate injector NLHDIDDJ_00128 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NLHDIDDJ_00133 PF00849 RNA pseudouridylate synthase NLHDIDDJ_00136 PF00593 TonB dependent receptor NLHDIDDJ_00136 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_00138 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_00139 PF01266 FAD dependent oxidoreductase NLHDIDDJ_00140 PF01168 Alanine racemase, N-terminal domain NLHDIDDJ_00140 PF00842 Alanine racemase, C-terminal domain NLHDIDDJ_00141 PF01042 Endoribonuclease L-PSP NLHDIDDJ_00142 PF00324 Amino acid permease NLHDIDDJ_00143 PF00324 Amino acid permease NLHDIDDJ_00145 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_00146 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NLHDIDDJ_00146 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NLHDIDDJ_00147 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_00147 PF00501 AMP-binding enzyme NLHDIDDJ_00148 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_00148 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_00148 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_00149 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_00150 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_00151 PF07690 Major Facilitator Superfamily NLHDIDDJ_00151 PF00083 Sugar (and other) transporter NLHDIDDJ_00152 PF00765 Autoinducer synthase NLHDIDDJ_00154 PF03472 Autoinducer binding domain NLHDIDDJ_00154 PF00196 Bacterial regulatory proteins, luxR family NLHDIDDJ_00155 PF00501 AMP-binding enzyme NLHDIDDJ_00156 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_00156 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_00156 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_00157 PF00109 Beta-ketoacyl synthase, N-terminal domain NLHDIDDJ_00157 PF00975 Thioesterase domain NLHDIDDJ_00157 PF02801 Beta-ketoacyl synthase, C-terminal domain NLHDIDDJ_00157 PF14765 Polyketide synthase dehydratase NLHDIDDJ_00157 PF00550 Phosphopantetheine attachment site NLHDIDDJ_00157 PF08242 Methyltransferase domain NLHDIDDJ_00157 PF16197 Ketoacyl-synthetase C-terminal extension NLHDIDDJ_00158 PF00501 AMP-binding enzyme NLHDIDDJ_00158 PF00668 Condensation domain NLHDIDDJ_00158 PF00550 Phosphopantetheine attachment site NLHDIDDJ_00158 PF00975 Thioesterase domain NLHDIDDJ_00158 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_00161 PF12697 Alpha/beta hydrolase family NLHDIDDJ_00162 PF01648 4'-phosphopantetheinyl transferase superfamily NLHDIDDJ_00165 PF01722 BolA-like protein NLHDIDDJ_00167 PF13614 AAA domain NLHDIDDJ_00170 PF09335 SNARE associated Golgi protein NLHDIDDJ_00171 PF07681 DoxX NLHDIDDJ_00172 PF04286 Protein of unknown function (DUF445) NLHDIDDJ_00173 PF02540 NAD synthase NLHDIDDJ_00173 PF00958 GMP synthase C terminal domain NLHDIDDJ_00173 PF00117 Glutamine amidotransferase class-I NLHDIDDJ_00174 PF13302 Acetyltransferase (GNAT) domain NLHDIDDJ_00175 PF03551 Transcriptional regulator PadR-like family NLHDIDDJ_00177 PF02678 Pirin NLHDIDDJ_00177 PF05726 Pirin C-terminal cupin domain NLHDIDDJ_00181 PF03485 Arginyl tRNA synthetase N terminal domain NLHDIDDJ_00181 PF05746 DALR anticodon binding domain NLHDIDDJ_00181 PF00750 tRNA synthetases class I (R) NLHDIDDJ_00182 PF03949 Malic enzyme, NAD binding domain NLHDIDDJ_00182 PF00390 Malic enzyme, N-terminal domain NLHDIDDJ_00183 PF04261 Dyp-type peroxidase family NLHDIDDJ_00184 PF01810 LysE type translocator NLHDIDDJ_00185 PF00950 ABC 3 transport family NLHDIDDJ_00186 PF00005 ABC transporter NLHDIDDJ_00190 PF00119 ATP synthase A chain NLHDIDDJ_00191 PF00137 ATP synthase subunit C NLHDIDDJ_00192 PF00430 ATP synthase B/B' CF(0) NLHDIDDJ_00193 PF00213 ATP synthase delta (OSCP) subunit NLHDIDDJ_00194 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NLHDIDDJ_00194 PF02874 ATP synthase alpha/beta family, beta-barrel domain NLHDIDDJ_00194 PF00306 ATP synthase alpha/beta chain, C terminal domain NLHDIDDJ_00195 PF00231 ATP synthase NLHDIDDJ_00196 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NLHDIDDJ_00196 PF02874 ATP synthase alpha/beta family, beta-barrel domain NLHDIDDJ_00197 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NLHDIDDJ_00199 PF00255 Glutathione peroxidase NLHDIDDJ_00201 PF07690 Major Facilitator Superfamily NLHDIDDJ_00202 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_00203 PF00892 EamA-like transporter family NLHDIDDJ_00204 PF01300 Telomere recombination NLHDIDDJ_00205 PF02481 DNA recombination-mediator protein A NLHDIDDJ_00205 PF17782 DprA winged helix domain NLHDIDDJ_00207 PF01327 Polypeptide deformylase NLHDIDDJ_00212 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_00219 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_00221 PF03358 NADPH-dependent FMN reductase NLHDIDDJ_00225 PF08497 Radical SAM N-terminal NLHDIDDJ_00225 PF11842 Domain of unknown function (DUF3362) NLHDIDDJ_00225 PF04055 Radical SAM superfamily NLHDIDDJ_00228 PF00817 impB/mucB/samB family NLHDIDDJ_00228 PF11799 impB/mucB/samB family C-terminal domain NLHDIDDJ_00228 PF11798 IMS family HHH motif NLHDIDDJ_00230 PF07690 Major Facilitator Superfamily NLHDIDDJ_00231 PF03641 Possible lysine decarboxylase NLHDIDDJ_00232 PF03471 Transporter associated domain NLHDIDDJ_00232 PF03741 Integral membrane protein TerC family NLHDIDDJ_00233 PF02810 SEC-C motif NLHDIDDJ_00234 PF03458 UPF0126 domain NLHDIDDJ_00235 PF07690 Major Facilitator Superfamily NLHDIDDJ_00236 PF03989 DNA gyrase C-terminal domain, beta-propeller NLHDIDDJ_00236 PF00521 DNA gyrase/topoisomerase IV, subunit A NLHDIDDJ_00237 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_00237 PF00501 AMP-binding enzyme NLHDIDDJ_00240 PF00719 Inorganic pyrophosphatase NLHDIDDJ_00241 PF03573 outer membrane porin, OprD family NLHDIDDJ_00244 PF00701 Dihydrodipicolinate synthetase family NLHDIDDJ_00245 PF00596 Class II Aldolase and Adducin N-terminal domain NLHDIDDJ_00246 PF00155 Aminotransferase class I and II NLHDIDDJ_00246 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_00247 PF13335 Magnesium chelatase, subunit ChlI C-terminal NLHDIDDJ_00247 PF01078 Magnesium chelatase, subunit ChlI NLHDIDDJ_00249 PF00543 Nitrogen regulatory protein P-II NLHDIDDJ_00250 PF00909 Ammonium Transporter Family NLHDIDDJ_00251 PF03477 ATP cone domain NLHDIDDJ_00252 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NLHDIDDJ_00252 PF01872 RibD C-terminal domain NLHDIDDJ_00254 PF00677 Lumazine binding domain NLHDIDDJ_00258 PF02789 Cytosol aminopeptidase family, N-terminal domain NLHDIDDJ_00258 PF00883 Cytosol aminopeptidase family, catalytic domain NLHDIDDJ_00260 PF03739 Lipopolysaccharide export system permease LptF/LptG NLHDIDDJ_00261 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NLHDIDDJ_00261 PF01676 Metalloenzyme superfamily NLHDIDDJ_00262 PF03572 Peptidase family S41 NLHDIDDJ_00262 PF00595 PDZ domain NLHDIDDJ_00263 PF00158 Sigma-54 interaction domain NLHDIDDJ_00263 PF00072 Response regulator receiver domain NLHDIDDJ_00263 PF02954 Bacterial regulatory protein, Fis family NLHDIDDJ_00264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_00264 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_00265 PF00072 Response regulator receiver domain NLHDIDDJ_00265 PF00196 Bacterial regulatory proteins, luxR family NLHDIDDJ_00266 PF00768 D-alanyl-D-alanine carboxypeptidase NLHDIDDJ_00267 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_00268 PF01842 ACT domain NLHDIDDJ_00268 PF00742 Homoserine dehydrogenase NLHDIDDJ_00268 PF03447 Homoserine dehydrogenase, NAD binding domain NLHDIDDJ_00269 PF13098 Thioredoxin-like domain NLHDIDDJ_00269 PF10411 Disulfide bond isomerase protein N-terminus NLHDIDDJ_00270 PF02899 Phage integrase, N-terminal SAM-like domain NLHDIDDJ_00270 PF00589 Phage integrase family NLHDIDDJ_00272 PF07664 Ferrous iron transport protein B C terminus NLHDIDDJ_00272 PF02421 Ferrous iron transport protein B NLHDIDDJ_00272 PF07670 Nucleoside recognition NLHDIDDJ_00274 PF02875 Mur ligase family, glutamate ligase domain NLHDIDDJ_00274 PF08245 Mur ligase middle domain NLHDIDDJ_00275 PF01098 Cell cycle protein NLHDIDDJ_00276 PF00749 tRNA synthetases class I (E and Q), catalytic domain NLHDIDDJ_00277 PF01258 Prokaryotic dksA/traR C4-type zinc finger NLHDIDDJ_00278 PF00149 Calcineurin-like phosphoesterase NLHDIDDJ_00279 PF00293 NUDIX domain NLHDIDDJ_00280 PF13667 ThiC-associated domain NLHDIDDJ_00280 PF01964 Radical SAM ThiC family NLHDIDDJ_00283 PF00892 EamA-like transporter family NLHDIDDJ_00284 PF02321 Outer membrane efflux protein NLHDIDDJ_00285 PF01895 PhoU domain NLHDIDDJ_00286 PF04362 Bacterial Fe(2+) trafficking NLHDIDDJ_00287 PF14698 Argininosuccinate lyase C-terminal NLHDIDDJ_00287 PF00206 Lyase NLHDIDDJ_00288 PF06580 Histidine kinase NLHDIDDJ_00288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_00288 PF07694 5TMR of 5TMR-LYT NLHDIDDJ_00289 PF04397 LytTr DNA-binding domain NLHDIDDJ_00289 PF00072 Response regulator receiver domain NLHDIDDJ_00290 PF03900 Porphobilinogen deaminase, C-terminal domain NLHDIDDJ_00290 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NLHDIDDJ_00295 PF00816 H-NS histone family NLHDIDDJ_00298 PF03958 Bacterial type II/III secretion system short domain NLHDIDDJ_00298 PF00263 Bacterial type II and III secretion system protein NLHDIDDJ_00299 PF00498 FHA domain NLHDIDDJ_00299 PF12401 Protein of unknown function (DUF2662) NLHDIDDJ_00300 PF13419 Haloacid dehalogenase-like hydrolase NLHDIDDJ_00301 PF04715 Anthranilate synthase component I, N terminal region NLHDIDDJ_00301 PF00425 chorismate binding enzyme NLHDIDDJ_00306 PF00009 Elongation factor Tu GTP binding domain NLHDIDDJ_00306 PF03144 Elongation factor Tu domain 2 NLHDIDDJ_00306 PF03143 Elongation factor Tu C-terminal domain NLHDIDDJ_00308 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NLHDIDDJ_00309 PF00467 KOW motif NLHDIDDJ_00309 PF02357 Transcription termination factor nusG NLHDIDDJ_00310 PF00298 Ribosomal protein L11, RNA binding domain NLHDIDDJ_00310 PF03946 Ribosomal protein L11, N-terminal domain NLHDIDDJ_00311 PF00687 Ribosomal protein L1p/L10e family NLHDIDDJ_00312 PF00466 Ribosomal protein L10 NLHDIDDJ_00313 PF00542 Ribosomal protein L7/L12 C-terminal domain NLHDIDDJ_00313 PF16320 Ribosomal protein L7/L12 dimerisation domain NLHDIDDJ_00314 PF04563 RNA polymerase beta subunit NLHDIDDJ_00314 PF04561 RNA polymerase Rpb2, domain 2 NLHDIDDJ_00314 PF04565 RNA polymerase Rpb2, domain 3 NLHDIDDJ_00314 PF10385 RNA polymerase beta subunit external 1 domain NLHDIDDJ_00314 PF04560 RNA polymerase Rpb2, domain 7 NLHDIDDJ_00314 PF00562 RNA polymerase Rpb2, domain 6 NLHDIDDJ_00315 PF00623 RNA polymerase Rpb1, domain 2 NLHDIDDJ_00315 PF04983 RNA polymerase Rpb1, domain 3 NLHDIDDJ_00315 PF05000 RNA polymerase Rpb1, domain 4 NLHDIDDJ_00315 PF04998 RNA polymerase Rpb1, domain 5 NLHDIDDJ_00315 PF04997 RNA polymerase Rpb1, domain 1 NLHDIDDJ_00319 PF00561 alpha/beta hydrolase fold NLHDIDDJ_00320 PF13726 Na+-H+ antiporter family NLHDIDDJ_00320 PF03553 Na+/H+ antiporter family NLHDIDDJ_00323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_00323 PF00183 Hsp90 protein NLHDIDDJ_00326 PF01323 DSBA-like thioredoxin domain NLHDIDDJ_00328 PF00376 MerR family regulatory protein NLHDIDDJ_00328 PF09278 MerR, DNA binding NLHDIDDJ_00332 PF02803 Thiolase, C-terminal domain NLHDIDDJ_00332 PF00108 Thiolase, N-terminal domain NLHDIDDJ_00333 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_00333 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_00333 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NLHDIDDJ_00336 PF01541 GIY-YIG catalytic domain NLHDIDDJ_00336 PF02151 UvrB/uvrC motif NLHDIDDJ_00336 PF08459 UvrC Helix-hairpin-helix N-terminal NLHDIDDJ_00338 PF01066 CDP-alcohol phosphatidyltransferase NLHDIDDJ_00339 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NLHDIDDJ_00339 PF12833 Helix-turn-helix domain NLHDIDDJ_00339 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NLHDIDDJ_00339 PF02805 Metal binding domain of Ada NLHDIDDJ_00344 PF13533 Biotin-lipoyl like NLHDIDDJ_00345 PF03652 Holliday junction resolvase NLHDIDDJ_00346 PF02622 Uncharacterized ACR, COG1678 NLHDIDDJ_00347 PF02463 RecF/RecN/SMC N terminal domain NLHDIDDJ_00349 PF06865 Pyrimidine/purine nucleoside phosphorylase NLHDIDDJ_00350 PF08032 RNA 2'-O ribose methyltransferase substrate binding NLHDIDDJ_00350 PF00588 SpoU rRNA Methylase family NLHDIDDJ_00352 PF01121 Dephospho-CoA kinase NLHDIDDJ_00353 PF01478 Type IV leader peptidase family NLHDIDDJ_00353 PF06750 Bacterial Peptidase A24 N-terminal domain NLHDIDDJ_00354 PF00482 Type II secretion system (T2SS), protein F NLHDIDDJ_00355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NLHDIDDJ_00355 PF00437 Type II/IV secretion system protein NLHDIDDJ_00356 PF00121 Triosephosphate isomerase NLHDIDDJ_00357 PF03840 Preprotein translocase SecG subunit NLHDIDDJ_00361 PF02576 RimP N-terminal domain NLHDIDDJ_00361 PF17384 RimP C-terminal SH3 domain NLHDIDDJ_00362 PF13184 NusA-like KH domain NLHDIDDJ_00362 PF08529 NusA N-terminal domain NLHDIDDJ_00362 PF00575 S1 RNA binding domain NLHDIDDJ_00363 PF11987 Translation-initiation factor 2 NLHDIDDJ_00363 PF08364 Bacterial translation initiation factor IF-2 associated region NLHDIDDJ_00363 PF04760 Translation initiation factor IF-2, N-terminal region NLHDIDDJ_00363 PF00009 Elongation factor Tu GTP binding domain NLHDIDDJ_00364 PF02033 Ribosome-binding factor A NLHDIDDJ_00365 PF03334 Na+/H+ antiporter subunit NLHDIDDJ_00366 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NLHDIDDJ_00367 PF01899 Na+/H+ ion antiporter subunit NLHDIDDJ_00368 PF00361 Proton-conducting membrane transporter NLHDIDDJ_00369 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NLHDIDDJ_00370 PF13244 Domain of unknown function (DUF4040) NLHDIDDJ_00370 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NLHDIDDJ_00370 PF00361 Proton-conducting membrane transporter NLHDIDDJ_00370 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NLHDIDDJ_00373 PF01502 Phosphoribosyl-AMP cyclohydrolase NLHDIDDJ_00374 PF01494 FAD binding domain NLHDIDDJ_00375 PF03109 ABC1 family NLHDIDDJ_00377 PF01209 ubiE/COQ5 methyltransferase family NLHDIDDJ_00379 PF03976 Polyphosphate kinase 2 (PPK2) NLHDIDDJ_00381 PF17946 RecC C-terminal domain NLHDIDDJ_00382 PF12705 PD-(D/E)XK nuclease superfamily NLHDIDDJ_00382 PF00580 UvrD/REP helicase N-terminal domain NLHDIDDJ_00382 PF13361 UvrD-like helicase C-terminal domain NLHDIDDJ_00383 PF13538 UvrD-like helicase C-terminal domain NLHDIDDJ_00384 PF00144 Beta-lactamase NLHDIDDJ_00385 PF00312 Ribosomal protein S15 NLHDIDDJ_00386 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NLHDIDDJ_00386 PF00575 S1 RNA binding domain NLHDIDDJ_00386 PF00013 KH domain NLHDIDDJ_00386 PF01138 3' exoribonuclease family, domain 1 NLHDIDDJ_00386 PF03725 3' exoribonuclease family, domain 2 NLHDIDDJ_00387 PF01544 CorA-like Mg2+ transporter protein NLHDIDDJ_00389 PF00226 DnaJ domain NLHDIDDJ_00389 PF01556 DnaJ C terminal domain NLHDIDDJ_00391 PF01430 Hsp33 protein NLHDIDDJ_00392 PF00999 Sodium/hydrogen exchanger family NLHDIDDJ_00392 PF02254 TrkA-N domain NLHDIDDJ_00393 PF18074 Primosomal protein N C-terminal domain NLHDIDDJ_00393 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NLHDIDDJ_00393 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_00393 PF00270 DEAD/DEAH box helicase NLHDIDDJ_00393 PF17764 3′ DNA-binding domain (3′BD) NLHDIDDJ_00394 PF00482 Type II secretion system (T2SS), protein F NLHDIDDJ_00395 PF07963 Prokaryotic N-terminal methylation motif NLHDIDDJ_00395 PF08334 Type II secretion system (T2SS), protein G NLHDIDDJ_00397 PF01588 Putative tRNA binding domain NLHDIDDJ_00398 PF00795 Carbon-nitrogen hydrolase NLHDIDDJ_00399 PF00571 CBS domain NLHDIDDJ_00399 PF03471 Transporter associated domain NLHDIDDJ_00400 PF01206 Sulfurtransferase TusA NLHDIDDJ_00404 PF01177 Asp/Glu/Hydantoin racemase NLHDIDDJ_00406 PF00762 Ferrochelatase NLHDIDDJ_00407 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_00408 PF03884 DNA gyrase inhibitor YacG NLHDIDDJ_00410 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NLHDIDDJ_00410 PF13247 4Fe-4S dicluster domain NLHDIDDJ_00410 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_00412 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NLHDIDDJ_00414 PF01197 Ribosomal protein L31 NLHDIDDJ_00415 PF03109 ABC1 family NLHDIDDJ_00416 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_00416 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_00417 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_00417 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_00417 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_00418 PF01554 MatE NLHDIDDJ_00420 PF06969 HemN C-terminal domain NLHDIDDJ_00420 PF04055 Radical SAM superfamily NLHDIDDJ_00421 PF00106 short chain dehydrogenase NLHDIDDJ_00422 PF03466 LysR substrate binding domain NLHDIDDJ_00422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00425 PF00501 AMP-binding enzyme NLHDIDDJ_00425 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_00426 PF12111 Polyribonucleotide phosphorylase C terminal NLHDIDDJ_00426 PF10150 Ribonuclease E/G family NLHDIDDJ_00426 PF00575 S1 RNA binding domain NLHDIDDJ_00427 PF00849 RNA pseudouridylate synthase NLHDIDDJ_00427 PF01479 S4 domain NLHDIDDJ_00428 PF13419 Haloacid dehalogenase-like hydrolase NLHDIDDJ_00429 PF08279 HTH domain NLHDIDDJ_00429 PF13280 WYL domain NLHDIDDJ_00430 PF02798 Glutathione S-transferase, N-terminal domain NLHDIDDJ_00432 PF03466 LysR substrate binding domain NLHDIDDJ_00432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00433 PF12706 Beta-lactamase superfamily domain NLHDIDDJ_00434 PF00141 Peroxidase NLHDIDDJ_00435 PF01590 GAF domain NLHDIDDJ_00435 PF05524 PEP-utilising enzyme, N-terminal NLHDIDDJ_00435 PF00391 PEP-utilising enzyme, mobile domain NLHDIDDJ_00435 PF02896 PEP-utilising enzyme, TIM barrel domain NLHDIDDJ_00436 PF00293 NUDIX domain NLHDIDDJ_00438 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00438 PF03466 LysR substrate binding domain NLHDIDDJ_00440 PF00330 Aconitase family (aconitate hydratase) NLHDIDDJ_00441 PF00694 Aconitase C-terminal domain NLHDIDDJ_00443 PF00180 Isocitrate/isopropylmalate dehydrogenase NLHDIDDJ_00446 PF01176 Translation initiation factor 1A / IF-1 NLHDIDDJ_00448 PF01416 tRNA pseudouridine synthase NLHDIDDJ_00452 PF01118 Semialdehyde dehydrogenase, NAD binding domain NLHDIDDJ_00452 PF02774 Semialdehyde dehydrogenase, dimerisation domain NLHDIDDJ_00454 PF00375 Sodium:dicarboxylate symporter family NLHDIDDJ_00456 PF03279 Bacterial lipid A biosynthesis acyltransferase NLHDIDDJ_00457 PF01810 LysE type translocator NLHDIDDJ_00458 PF00005 ABC transporter NLHDIDDJ_00458 PF16326 ABC transporter C-terminal domain NLHDIDDJ_00458 PF12848 ABC transporter NLHDIDDJ_00459 PF04102 SlyX NLHDIDDJ_00460 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_00460 PF00107 Zinc-binding dehydrogenase NLHDIDDJ_00461 PF01638 HxlR-like helix-turn-helix NLHDIDDJ_00463 PF01131 DNA topoisomerase NLHDIDDJ_00463 PF01396 Topoisomerase DNA binding C4 zinc finger NLHDIDDJ_00463 PF08272 Topoisomerase I zinc-ribbon-like NLHDIDDJ_00463 PF01751 Toprim domain NLHDIDDJ_00466 PF00580 UvrD/REP helicase N-terminal domain NLHDIDDJ_00466 PF13361 UvrD-like helicase C-terminal domain NLHDIDDJ_00467 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NLHDIDDJ_00471 PF00999 Sodium/hydrogen exchanger family NLHDIDDJ_00471 PF02254 TrkA-N domain NLHDIDDJ_00472 PF00471 Ribosomal protein L33 NLHDIDDJ_00473 PF00830 Ribosomal L28 family NLHDIDDJ_00474 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_00476 PF00551 Formyl transferase NLHDIDDJ_00476 PF01842 ACT domain NLHDIDDJ_00478 PF01618 MotA/TolQ/ExbB proton channel family NLHDIDDJ_00480 PF01625 Peptide methionine sulfoxide reductase NLHDIDDJ_00482 PF00186 Dihydrofolate reductase NLHDIDDJ_00489 PF01381 Helix-turn-helix NLHDIDDJ_00495 PF00905 Penicillin binding protein transpeptidase domain NLHDIDDJ_00498 PF01850 PIN domain NLHDIDDJ_00499 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NLHDIDDJ_00503 PF13610 DDE domain NLHDIDDJ_00506 PF00186 Dihydrofolate reductase NLHDIDDJ_00508 PF07690 Major Facilitator Superfamily NLHDIDDJ_00510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NLHDIDDJ_00510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NLHDIDDJ_00510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NLHDIDDJ_00510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NLHDIDDJ_00511 PF00809 Pterin binding enzyme NLHDIDDJ_00513 PF13614 AAA domain NLHDIDDJ_00514 PF08535 KorB domain NLHDIDDJ_00514 PF02195 ParB-like nuclease domain NLHDIDDJ_00514 PF06613 KorB C-terminal beta-barrel domain NLHDIDDJ_00522 PF00145 C-5 cytosine-specific DNA methylase NLHDIDDJ_00526 PF01131 DNA topoisomerase NLHDIDDJ_00526 PF01751 Toprim domain NLHDIDDJ_00542 PF10411 Disulfide bond isomerase protein N-terminus NLHDIDDJ_00542 PF13098 Thioredoxin-like domain NLHDIDDJ_00547 PF00563 EAL domain NLHDIDDJ_00547 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_00547 PF08447 PAS fold NLHDIDDJ_00547 PF08448 PAS fold NLHDIDDJ_00548 PF06834 TraU protein NLHDIDDJ_00555 PF08406 CbbQ/NirQ/NorQ C-terminal NLHDIDDJ_00555 PF07728 AAA domain (dynein-related subfamily) NLHDIDDJ_00557 PF00436 Single-strand binding protein family NLHDIDDJ_00566 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_00590 PF01548 Transposase NLHDIDDJ_00590 PF02371 Transposase IS116/IS110/IS902 family NLHDIDDJ_00591 PF01526 Tn3 transposase DDE domain NLHDIDDJ_00591 PF13700 Domain of unknown function (DUF4158) NLHDIDDJ_00592 PF02796 Helix-turn-helix domain of resolvase NLHDIDDJ_00592 PF00239 Resolvase, N terminal domain NLHDIDDJ_00593 PF13495 Phage integrase, N-terminal SAM-like domain NLHDIDDJ_00593 PF00589 Phage integrase family NLHDIDDJ_00594 PF00186 Dihydrofolate reductase NLHDIDDJ_00596 PF07690 Major Facilitator Superfamily NLHDIDDJ_00597 PF00905 Penicillin binding protein transpeptidase domain NLHDIDDJ_00598 PF13427 Domain of unknown function (DUF4111) NLHDIDDJ_00598 PF01909 Nucleotidyltransferase domain NLHDIDDJ_00599 PF00893 Small Multidrug Resistance protein NLHDIDDJ_00600 PF00809 Pterin binding enzyme NLHDIDDJ_00603 PF13610 DDE domain NLHDIDDJ_00604 PF02796 Helix-turn-helix domain of resolvase NLHDIDDJ_00604 PF00239 Resolvase, N terminal domain NLHDIDDJ_00608 PF02796 Helix-turn-helix domain of resolvase NLHDIDDJ_00608 PF00239 Resolvase, N terminal domain NLHDIDDJ_00610 PF11798 IMS family HHH motif NLHDIDDJ_00610 PF00817 impB/mucB/samB family NLHDIDDJ_00610 PF11799 impB/mucB/samB family C-terminal domain NLHDIDDJ_00610 PF13438 Domain of unknown function (DUF4113) NLHDIDDJ_00611 PF00717 Peptidase S24-like NLHDIDDJ_00613 PF13340 Putative transposase of IS4/5 family (DUF4096) NLHDIDDJ_00617 PF02522 Aminoglycoside 3-N-acetyltransferase NLHDIDDJ_00619 PF00239 Resolvase, N terminal domain NLHDIDDJ_00619 PF02796 Helix-turn-helix domain of resolvase NLHDIDDJ_00620 PF01526 Tn3 transposase DDE domain NLHDIDDJ_00620 PF13700 Domain of unknown function (DUF4158) NLHDIDDJ_00621 PF13610 DDE domain NLHDIDDJ_00623 PF00665 Integrase core domain NLHDIDDJ_00624 PF13610 DDE domain NLHDIDDJ_00625 PF01636 Phosphotransferase enzyme family NLHDIDDJ_00626 PF13610 DDE domain NLHDIDDJ_00628 PF07690 Major Facilitator Superfamily NLHDIDDJ_00630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NLHDIDDJ_00630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NLHDIDDJ_00630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NLHDIDDJ_00630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NLHDIDDJ_00631 PF00809 Pterin binding enzyme NLHDIDDJ_00637 PF08463 EcoEI R protein C-terminal NLHDIDDJ_00637 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NLHDIDDJ_00637 PF04851 Type III restriction enzyme, res subunit NLHDIDDJ_00637 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_00639 PF00580 UvrD/REP helicase N-terminal domain NLHDIDDJ_00639 PF13361 UvrD-like helicase C-terminal domain NLHDIDDJ_00640 PF00303 Thymidylate synthase NLHDIDDJ_00643 PF00589 Phage integrase family NLHDIDDJ_00643 PF02899 Phage integrase, N-terminal SAM-like domain NLHDIDDJ_00644 PF02899 Phage integrase, N-terminal SAM-like domain NLHDIDDJ_00644 PF00589 Phage integrase family NLHDIDDJ_00648 PF01790 Prolipoprotein diacylglyceryl transferase NLHDIDDJ_00652 PF00902 Sec-independent protein translocase protein (TatC) NLHDIDDJ_00653 PF02416 mttA/Hcf106 family NLHDIDDJ_00654 PF02416 mttA/Hcf106 family NLHDIDDJ_00656 PF01725 Ham1 family NLHDIDDJ_00658 PF00561 alpha/beta hydrolase fold NLHDIDDJ_00658 PF07021 Methionine biosynthesis protein MetW NLHDIDDJ_00659 PF00561 alpha/beta hydrolase fold NLHDIDDJ_00660 PF00682 HMGL-like NLHDIDDJ_00660 PF08502 LeuA allosteric (dimerisation) domain NLHDIDDJ_00661 PF18331 PKHD-type hydroxylase C-terminal domain NLHDIDDJ_00661 PF13640 2OG-Fe(II) oxygenase superfamily NLHDIDDJ_00662 PF00593 TonB dependent receptor NLHDIDDJ_00662 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_00663 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NLHDIDDJ_00663 PF05697 Bacterial trigger factor protein (TF) NLHDIDDJ_00663 PF05698 Bacterial trigger factor protein (TF) C-terminus NLHDIDDJ_00664 PF00574 Clp protease NLHDIDDJ_00665 PF07724 AAA domain (Cdc48 subfamily) NLHDIDDJ_00665 PF10431 C-terminal, D2-small domain, of ClpB protein NLHDIDDJ_00665 PF06689 ClpX C4-type zinc finger NLHDIDDJ_00668 PF05681 Fumarate hydratase (Fumerase) NLHDIDDJ_00668 PF05683 Fumarase C-terminus NLHDIDDJ_00669 PF01515 Phosphate acetyl/butaryl transferase NLHDIDDJ_00669 PF07085 DRTGG domain NLHDIDDJ_00670 PF00871 Acetokinase family NLHDIDDJ_00671 PF00920 Dehydratase family NLHDIDDJ_00672 PF01081 KDPG and KHG aldolase NLHDIDDJ_00673 PF02447 GntP family permease NLHDIDDJ_00674 PF01202 Shikimate kinase NLHDIDDJ_00675 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_00676 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_00677 PF00561 alpha/beta hydrolase fold NLHDIDDJ_00679 PF00933 Glycosyl hydrolase family 3 N terminal domain NLHDIDDJ_00680 PF11818 C-terminal domain of tail specific protease (DUF3340) NLHDIDDJ_00680 PF17804 Tail specific protease N-terminal domain NLHDIDDJ_00680 PF03572 Peptidase family S41 NLHDIDDJ_00680 PF00595 PDZ domain NLHDIDDJ_00681 PF13439 Glycosyltransferase Family 4 NLHDIDDJ_00681 PF00534 Glycosyl transferases group 1 NLHDIDDJ_00682 PF01569 PAP2 superfamily NLHDIDDJ_00683 PF04384 Iron-sulphur cluster assembly NLHDIDDJ_00684 PF00334 Nucleoside diphosphate kinase NLHDIDDJ_00685 PF04055 Radical SAM superfamily NLHDIDDJ_00687 PF13464 Domain of unknown function (DUF4115) NLHDIDDJ_00688 PF04551 GcpE protein NLHDIDDJ_00689 PF03129 Anticodon binding domain NLHDIDDJ_00689 PF13393 Histidyl-tRNA synthetase NLHDIDDJ_00691 PF13360 PQQ-like domain NLHDIDDJ_00692 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NLHDIDDJ_00692 PF01926 50S ribosome-binding GTPase NLHDIDDJ_00695 PF00550 Phosphopantetheine attachment site NLHDIDDJ_00696 PF00550 Phosphopantetheine attachment site NLHDIDDJ_00698 PF00501 AMP-binding enzyme NLHDIDDJ_00698 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_00699 PF00535 Glycosyl transferase family 2 NLHDIDDJ_00701 PF00221 Aromatic amino acid lyase NLHDIDDJ_00705 PF04820 Tryptophan halogenase NLHDIDDJ_00707 PF00109 Beta-ketoacyl synthase, N-terminal domain NLHDIDDJ_00707 PF02801 Beta-ketoacyl synthase, C-terminal domain NLHDIDDJ_00710 PF02801 Beta-ketoacyl synthase, C-terminal domain NLHDIDDJ_00710 PF00109 Beta-ketoacyl synthase, N-terminal domain NLHDIDDJ_00713 PF02556 Preprotein translocase subunit SecB NLHDIDDJ_00714 PF00462 Glutaredoxin NLHDIDDJ_00716 PF03193 RsgA GTPase NLHDIDDJ_00717 PF00929 Exonuclease NLHDIDDJ_00720 PF02321 Outer membrane efflux protein NLHDIDDJ_00721 PF00005 ABC transporter NLHDIDDJ_00721 PF12704 MacB-like periplasmic core domain NLHDIDDJ_00721 PF02687 FtsX-like permease family NLHDIDDJ_00722 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_00725 PF08264 Anticodon-binding domain of tRNA NLHDIDDJ_00725 PF00133 tRNA synthetases class I (I, L, M and V) NLHDIDDJ_00725 PF13603 Leucyl-tRNA synthetase, Domain 2 NLHDIDDJ_00725 PF09334 tRNA synthetases class I (M) NLHDIDDJ_00727 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NLHDIDDJ_00727 PF00205 Thiamine pyrophosphate enzyme, central domain NLHDIDDJ_00727 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NLHDIDDJ_00728 PF10369 Small subunit of acetolactate synthase NLHDIDDJ_00729 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NLHDIDDJ_00729 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NLHDIDDJ_00730 PF00563 EAL domain NLHDIDDJ_00730 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_00730 PF03707 Bacterial signalling protein N terminal repeat NLHDIDDJ_00734 PF04717 Type VI secretion system, phage-baseplate injector NLHDIDDJ_00734 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NLHDIDDJ_00734 PF13296 Putative type VI secretion system Rhs element Vgr NLHDIDDJ_00739 PF16658 Class II release factor RF3, C-terminal domain NLHDIDDJ_00739 PF00009 Elongation factor Tu GTP binding domain NLHDIDDJ_00739 PF03144 Elongation factor Tu domain 2 NLHDIDDJ_00742 PF01026 TatD related DNase NLHDIDDJ_00743 PF00330 Aconitase family (aconitate hydratase) NLHDIDDJ_00743 PF00694 Aconitase C-terminal domain NLHDIDDJ_00744 PF00899 ThiF family NLHDIDDJ_00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00745 PF03466 LysR substrate binding domain NLHDIDDJ_00747 PF01207 Dihydrouridine synthase (Dus) NLHDIDDJ_00748 PF07690 Major Facilitator Superfamily NLHDIDDJ_00750 PF00892 EamA-like transporter family NLHDIDDJ_00751 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NLHDIDDJ_00751 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NLHDIDDJ_00752 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NLHDIDDJ_00753 PF02233 NAD(P) transhydrogenase beta subunit NLHDIDDJ_00754 PF00106 short chain dehydrogenase NLHDIDDJ_00757 PF01261 Xylose isomerase-like TIM barrel NLHDIDDJ_00758 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NLHDIDDJ_00758 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NLHDIDDJ_00759 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_00760 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_00760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_00760 PF00072 Response regulator receiver domain NLHDIDDJ_00760 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NLHDIDDJ_00760 PF00672 HAMP domain NLHDIDDJ_00760 PF01627 Hpt domain NLHDIDDJ_00761 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_00763 PF05958 tRNA (Uracil-5-)-methyltransferase NLHDIDDJ_00764 PF13291 ACT domain NLHDIDDJ_00764 PF04607 Region found in RelA / SpoT proteins NLHDIDDJ_00764 PF02824 TGS domain NLHDIDDJ_00766 PF03819 MazG nucleotide pyrophosphohydrolase domain NLHDIDDJ_00768 PF01743 Poly A polymerase head domain NLHDIDDJ_00768 PF12626 Polymerase A arginine-rich C-terminus NLHDIDDJ_00768 PF12627 Probable RNA and SrmB- binding site of polymerase A NLHDIDDJ_00769 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NLHDIDDJ_00770 PF02548 Ketopantoate hydroxymethyltransferase NLHDIDDJ_00771 PF02569 Pantoate-beta-alanine ligase NLHDIDDJ_00772 PF03668 P-loop ATPase protein family NLHDIDDJ_00773 PF00381 PTS HPr component phosphorylation site NLHDIDDJ_00774 PF04751 Protein of unknown function (DUF615) NLHDIDDJ_00775 PF00501 AMP-binding enzyme NLHDIDDJ_00775 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_00776 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NLHDIDDJ_00776 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NLHDIDDJ_00776 PF03129 Anticodon binding domain NLHDIDDJ_00776 PF02824 TGS domain NLHDIDDJ_00777 PF05198 Translation initiation factor IF-3, N-terminal domain NLHDIDDJ_00777 PF00707 Translation initiation factor IF-3, C-terminal domain NLHDIDDJ_00778 PF00043 Glutathione S-transferase, C-terminal domain NLHDIDDJ_00778 PF02798 Glutathione S-transferase, N-terminal domain NLHDIDDJ_00779 PF09335 SNARE associated Golgi protein NLHDIDDJ_00780 PF07690 Major Facilitator Superfamily NLHDIDDJ_00781 PF01632 Ribosomal protein L35 NLHDIDDJ_00782 PF00453 Ribosomal protein L20 NLHDIDDJ_00787 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NLHDIDDJ_00787 PF01409 tRNA synthetases class II core domain (F) NLHDIDDJ_00788 PF03483 B3/4 domain NLHDIDDJ_00788 PF03484 tRNA synthetase B5 domain NLHDIDDJ_00788 PF03147 Ferredoxin-fold anticodon binding domain NLHDIDDJ_00788 PF01588 Putative tRNA binding domain NLHDIDDJ_00788 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NLHDIDDJ_00789 PF00216 Bacterial DNA-binding protein NLHDIDDJ_00791 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NLHDIDDJ_00791 PF07498 Rho termination factor, N-terminal domain NLHDIDDJ_00791 PF07497 Rho termination factor, RNA-binding domain NLHDIDDJ_00792 PF00085 Thioredoxin NLHDIDDJ_00793 PF02541 Ppx/GppA phosphatase family NLHDIDDJ_00794 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NLHDIDDJ_00795 PF11734 TilS substrate C-terminal domain NLHDIDDJ_00795 PF01171 PP-loop family NLHDIDDJ_00795 PF09179 TilS substrate binding domain NLHDIDDJ_00796 PF03807 NADP oxidoreductase coenzyme F420-dependent NLHDIDDJ_00796 PF14748 Pyrroline-5-carboxylate reductase dimerisation NLHDIDDJ_00797 PF02325 YGGT family NLHDIDDJ_00798 PF01367 5'-3' exonuclease, C-terminal SAM fold NLHDIDDJ_00798 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NLHDIDDJ_00798 PF00476 DNA polymerase family A NLHDIDDJ_00798 PF01612 3'-5' exonuclease NLHDIDDJ_00802 PF00437 Type II/IV secretion system protein NLHDIDDJ_00803 PF02566 OsmC-like protein NLHDIDDJ_00804 PF01047 MarR family NLHDIDDJ_00806 PF00795 Carbon-nitrogen hydrolase NLHDIDDJ_00815 PF00309 Sigma-54 factor, Activator interacting domain (AID) NLHDIDDJ_00815 PF04963 Sigma-54 factor, core binding domain NLHDIDDJ_00815 PF04552 Sigma-54, DNA binding domain NLHDIDDJ_00816 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NLHDIDDJ_00817 PF01722 BolA-like protein NLHDIDDJ_00818 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NLHDIDDJ_00819 PF01634 ATP phosphoribosyltransferase NLHDIDDJ_00820 PF00815 Histidinol dehydrogenase NLHDIDDJ_00821 PF00155 Aminotransferase class I and II NLHDIDDJ_00822 PF00425 chorismate binding enzyme NLHDIDDJ_00822 PF04715 Anthranilate synthase component I, N terminal region NLHDIDDJ_00830 PF00293 NUDIX domain NLHDIDDJ_00831 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_00832 PF00814 Glycoprotease family NLHDIDDJ_00833 PF04445 Putative SAM-dependent methyltransferase NLHDIDDJ_00835 PF00756 Putative esterase NLHDIDDJ_00837 PF00834 Ribulose-phosphate 3 epimerase family NLHDIDDJ_00840 PF00394 Multicopper oxidase NLHDIDDJ_00840 PF07731 Multicopper oxidase NLHDIDDJ_00840 PF07732 Multicopper oxidase NLHDIDDJ_00841 PF05275 Copper resistance protein B precursor (CopB) NLHDIDDJ_00843 PF00893 Small Multidrug Resistance protein NLHDIDDJ_00844 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NLHDIDDJ_00844 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NLHDIDDJ_00845 PF01960 ArgJ family NLHDIDDJ_00846 PF02445 Quinolinate synthetase A protein NLHDIDDJ_00851 PF00962 Adenosine/AMP deaminase NLHDIDDJ_00852 PF00107 Zinc-binding dehydrogenase NLHDIDDJ_00852 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_00853 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00853 PF03466 LysR substrate binding domain NLHDIDDJ_00854 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_00854 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_00854 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_00855 PF07690 Major Facilitator Superfamily NLHDIDDJ_00856 PF02515 CoA-transferase family III NLHDIDDJ_00858 PF14537 Cytochrome c3 NLHDIDDJ_00858 PF00890 FAD binding domain NLHDIDDJ_00859 PF03466 LysR substrate binding domain NLHDIDDJ_00859 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00861 PF07690 Major Facilitator Superfamily NLHDIDDJ_00862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00862 PF03466 LysR substrate binding domain NLHDIDDJ_00864 PF07687 Peptidase dimerisation domain NLHDIDDJ_00864 PF01546 Peptidase family M20/M25/M40 NLHDIDDJ_00865 PF12833 Helix-turn-helix domain NLHDIDDJ_00865 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NLHDIDDJ_00868 PF01717 Cobalamin-independent synthase, Catalytic domain NLHDIDDJ_00868 PF08267 Cobalamin-independent synthase, N-terminal domain NLHDIDDJ_00869 PF01613 Flavin reductase like domain NLHDIDDJ_00877 PF17074 Darcynin, domain of unknown function NLHDIDDJ_00880 PF00268 Ribonucleotide reductase, small chain NLHDIDDJ_00882 PF03477 ATP cone domain NLHDIDDJ_00882 PF00317 Ribonucleotide reductase, all-alpha domain NLHDIDDJ_00882 PF02867 Ribonucleotide reductase, barrel domain NLHDIDDJ_00883 PF00072 Response regulator receiver domain NLHDIDDJ_00883 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_00884 PF00672 HAMP domain NLHDIDDJ_00884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_00884 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_00886 PF17151 Periplasmic sensor domain NLHDIDDJ_00886 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_00887 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NLHDIDDJ_00888 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NLHDIDDJ_00889 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NLHDIDDJ_00889 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NLHDIDDJ_00891 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NLHDIDDJ_00891 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NLHDIDDJ_00891 PF10531 SLBB domain NLHDIDDJ_00892 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NLHDIDDJ_00892 PF00384 Molybdopterin oxidoreductase NLHDIDDJ_00892 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NLHDIDDJ_00893 PF00146 NADH dehydrogenase NLHDIDDJ_00894 PF12838 4Fe-4S dicluster domain NLHDIDDJ_00895 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NLHDIDDJ_00896 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NLHDIDDJ_00897 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NLHDIDDJ_00897 PF00361 Proton-conducting membrane transporter NLHDIDDJ_00898 PF00361 Proton-conducting membrane transporter NLHDIDDJ_00899 PF00361 Proton-conducting membrane transporter NLHDIDDJ_00901 PF00313 'Cold-shock' DNA-binding domain NLHDIDDJ_00902 PF03466 LysR substrate binding domain NLHDIDDJ_00902 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00903 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_00903 PF00970 Oxidoreductase FAD-binding domain NLHDIDDJ_00906 PF05552 Conserved TM helix NLHDIDDJ_00909 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_00910 PF00529 HlyD membrane-fusion protein of T1SS NLHDIDDJ_00910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_00915 PF09334 tRNA synthetases class I (M) NLHDIDDJ_00915 PF01588 Putative tRNA binding domain NLHDIDDJ_00917 PF10609 NUBPL iron-transfer P-loop NTPase NLHDIDDJ_00918 PF01048 Phosphorylase superfamily NLHDIDDJ_00921 PF00692 dUTPase NLHDIDDJ_00927 PF01207 Dihydrouridine synthase (Dus) NLHDIDDJ_00929 PF00448 SRP54-type protein, GTPase domain NLHDIDDJ_00929 PF02881 SRP54-type protein, helical bundle domain NLHDIDDJ_00929 PF02978 Signal peptide binding domain NLHDIDDJ_00930 PF03309 Type III pantothenate kinase NLHDIDDJ_00932 PF01925 Sulfite exporter TauE/SafE NLHDIDDJ_00934 PF06470 SMC proteins Flexible Hinge Domain NLHDIDDJ_00934 PF02463 RecF/RecN/SMC N terminal domain NLHDIDDJ_00936 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NLHDIDDJ_00936 PF03120 NAD-dependent DNA ligase OB-fold domain NLHDIDDJ_00936 PF12826 Helix-hairpin-helix motif NLHDIDDJ_00936 PF00533 BRCA1 C Terminus (BRCT) domain NLHDIDDJ_00936 PF01653 NAD-dependent DNA ligase adenylation domain NLHDIDDJ_00937 PF00210 Ferritin-like domain NLHDIDDJ_00938 PF07690 Major Facilitator Superfamily NLHDIDDJ_00939 PF00982 Glycosyltransferase family 20 NLHDIDDJ_00940 PF02358 Trehalose-phosphatase NLHDIDDJ_00941 PF12697 Alpha/beta hydrolase family NLHDIDDJ_00941 PF08241 Methyltransferase domain NLHDIDDJ_00942 PF00202 Aminotransferase class-III NLHDIDDJ_00942 PF06968 Biotin and Thiamin Synthesis associated domain NLHDIDDJ_00942 PF04055 Radical SAM superfamily NLHDIDDJ_00943 PF00155 Aminotransferase class I and II NLHDIDDJ_00946 PF01479 S4 domain NLHDIDDJ_00946 PF00849 RNA pseudouridylate synthase NLHDIDDJ_00947 PF04079 Segregation and condensation complex subunit ScpB NLHDIDDJ_00948 PF02616 Segregation and condensation protein ScpA NLHDIDDJ_00949 PF01300 Telomere recombination NLHDIDDJ_00950 PF04315 Elongation factor P hydroxylase NLHDIDDJ_00951 PF02620 Large ribosomal RNA subunit accumulation protein YceD NLHDIDDJ_00952 PF01783 Ribosomal L32p protein family NLHDIDDJ_00953 PF00698 Acyl transferase domain NLHDIDDJ_00955 PF00550 Phosphopantetheine attachment site NLHDIDDJ_00956 PF01476 LysM domain NLHDIDDJ_00956 PF04972 BON domain NLHDIDDJ_00957 PF08543 Phosphomethylpyrimidine kinase NLHDIDDJ_00957 PF03070 TENA/THI-4/PQQC family NLHDIDDJ_00957 PF02581 Thiamine monophosphate synthase NLHDIDDJ_00959 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NLHDIDDJ_00962 PF02261 Aspartate decarboxylase NLHDIDDJ_00963 PF01195 Peptidyl-tRNA hydrolase NLHDIDDJ_00964 PF01386 Ribosomal L25p family NLHDIDDJ_00965 PF14572 Phosphoribosyl synthetase-associated domain NLHDIDDJ_00965 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NLHDIDDJ_00970 PF03550 Outer membrane lipoprotein LolB NLHDIDDJ_00972 PF01488 Shikimate / quinate 5-dehydrogenase NLHDIDDJ_00972 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NLHDIDDJ_00972 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NLHDIDDJ_00973 PF01807 CHC2 zinc finger NLHDIDDJ_00973 PF08275 DNA primase catalytic core, N-terminal domain NLHDIDDJ_00973 PF08278 DNA primase DnaG DnaB-binding NLHDIDDJ_00973 PF10410 DnaB-helicase binding domain of primase NLHDIDDJ_00974 PF13525 Outer membrane lipoprotein NLHDIDDJ_00975 PF01479 S4 domain NLHDIDDJ_00975 PF00849 RNA pseudouridylate synthase NLHDIDDJ_00976 PF02578 Multi-copper polyphenol oxidoreductase laccase NLHDIDDJ_00977 PF03358 NADPH-dependent FMN reductase NLHDIDDJ_00978 PF01668 SmpB protein NLHDIDDJ_00979 PF01467 Cytidylyltransferase-like NLHDIDDJ_00980 PF00037 4Fe-4S binding domain NLHDIDDJ_00983 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_00983 PF03466 LysR substrate binding domain NLHDIDDJ_00984 PF00180 Isocitrate/isopropylmalate dehydrogenase NLHDIDDJ_00985 PF02028 BCCT, betaine/carnitine/choline family transporter NLHDIDDJ_00986 PF07859 alpha/beta hydrolase fold NLHDIDDJ_00987 PF00355 Rieske [2Fe-2S] domain NLHDIDDJ_00987 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NLHDIDDJ_00988 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_00989 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_00989 PF00970 Oxidoreductase FAD-binding domain NLHDIDDJ_00989 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_00992 PF00795 Carbon-nitrogen hydrolase NLHDIDDJ_00992 PF02540 NAD synthase NLHDIDDJ_00996 PF03653 Uncharacterised protein family (UPF0093) NLHDIDDJ_00997 PF00109 Beta-ketoacyl synthase, N-terminal domain NLHDIDDJ_00997 PF02801 Beta-ketoacyl synthase, C-terminal domain NLHDIDDJ_00999 PF00164 Ribosomal protein S12/S23 NLHDIDDJ_01000 PF00177 Ribosomal protein S7p/S5e NLHDIDDJ_01001 PF00009 Elongation factor Tu GTP binding domain NLHDIDDJ_01001 PF03144 Elongation factor Tu domain 2 NLHDIDDJ_01001 PF03764 Elongation factor G, domain IV NLHDIDDJ_01001 PF00679 Elongation factor G C-terminus NLHDIDDJ_01001 PF14492 Elongation Factor G, domain II NLHDIDDJ_01002 PF00009 Elongation factor Tu GTP binding domain NLHDIDDJ_01002 PF03143 Elongation factor Tu C-terminal domain NLHDIDDJ_01002 PF03144 Elongation factor Tu domain 2 NLHDIDDJ_01005 PF00583 Acetyltransferase (GNAT) family NLHDIDDJ_01006 PF04376 Arginine-tRNA-protein transferase, N terminus NLHDIDDJ_01006 PF04377 Arginine-tRNA-protein transferase, C terminus NLHDIDDJ_01007 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NLHDIDDJ_01008 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01009 PF17854 FtsK alpha domain NLHDIDDJ_01009 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NLHDIDDJ_01009 PF01580 FtsK/SpoIIIE family NLHDIDDJ_01009 PF09397 Ftsk gamma domain NLHDIDDJ_01010 PF01810 LysE type translocator NLHDIDDJ_01012 PF03776 Septum formation topological specificity factor MinE NLHDIDDJ_01013 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NLHDIDDJ_01014 PF03775 Septum formation inhibitor MinC, C-terminal domain NLHDIDDJ_01016 PF01553 Acyltransferase NLHDIDDJ_01017 PF00691 OmpA family NLHDIDDJ_01017 PF13488 Glycine zipper NLHDIDDJ_01019 PF00580 UvrD/REP helicase N-terminal domain NLHDIDDJ_01019 PF13361 UvrD-like helicase C-terminal domain NLHDIDDJ_01020 PF00692 dUTPase NLHDIDDJ_01021 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NLHDIDDJ_01021 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NLHDIDDJ_01021 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NLHDIDDJ_01021 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NLHDIDDJ_01022 PF00696 Amino acid kinase family NLHDIDDJ_01024 PF13230 Glutamine amidotransferases class-II NLHDIDDJ_01025 PF01814 Hemerythrin HHE cation binding domain NLHDIDDJ_01027 PF03658 RnfH family Ubiquitin NLHDIDDJ_01028 PF04355 SmpA / OmlA family NLHDIDDJ_01029 PF01475 Ferric uptake regulator family NLHDIDDJ_01030 PF00437 Type II/IV secretion system protein NLHDIDDJ_01031 PF00437 Type II/IV secretion system protein NLHDIDDJ_01032 PF01168 Alanine racemase, N-terminal domain NLHDIDDJ_01034 PF12320 Type 5 capsule protein repressor C-terminal domain NLHDIDDJ_01034 PF00149 Calcineurin-like phosphoesterase NLHDIDDJ_01038 PF01370 NAD dependent epimerase/dehydratase family NLHDIDDJ_01038 PF08338 Domain of unknown function (DUF1731) NLHDIDDJ_01039 PF01266 FAD dependent oxidoreductase NLHDIDDJ_01040 PF00490 Delta-aminolevulinic acid dehydratase NLHDIDDJ_01041 PF03061 Thioesterase superfamily NLHDIDDJ_01042 PF13533 Biotin-lipoyl like NLHDIDDJ_01043 PF07690 Major Facilitator Superfamily NLHDIDDJ_01046 PF08463 EcoEI R protein C-terminal NLHDIDDJ_01046 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NLHDIDDJ_01046 PF04851 Type III restriction enzyme, res subunit NLHDIDDJ_01046 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_01047 PF12161 HsdM N-terminal domain NLHDIDDJ_01047 PF02384 N-6 DNA Methylase NLHDIDDJ_01048 PF01420 Type I restriction modification DNA specificity domain NLHDIDDJ_01049 PF01420 Type I restriction modification DNA specificity domain NLHDIDDJ_01056 PF00083 Sugar (and other) transporter NLHDIDDJ_01057 PF00701 Dihydrodipicolinate synthetase family NLHDIDDJ_01062 PF13520 Amino acid permease NLHDIDDJ_01063 PF02574 Homocysteine S-methyltransferase NLHDIDDJ_01065 PF06039 Malate:quinone oxidoreductase (Mqo) NLHDIDDJ_01066 PF05199 GMC oxidoreductase NLHDIDDJ_01066 PF00732 GMC oxidoreductase NLHDIDDJ_01067 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01068 PF13977 BetI-type transcriptional repressor, C-terminal NLHDIDDJ_01068 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_01069 PF02028 BCCT, betaine/carnitine/choline family transporter NLHDIDDJ_01070 PF02028 BCCT, betaine/carnitine/choline family transporter NLHDIDDJ_01072 PF03061 Thioesterase superfamily NLHDIDDJ_01074 PF07683 Cobalamin synthesis protein cobW C-terminal domain NLHDIDDJ_01074 PF02492 CobW/HypB/UreG, nucleotide-binding domain NLHDIDDJ_01075 PF00375 Sodium:dicarboxylate symporter family NLHDIDDJ_01076 PF07152 YaeQ protein NLHDIDDJ_01077 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NLHDIDDJ_01078 PF14883 Hypothetical glycosyl hydrolase family 13 NLHDIDDJ_01078 PF01522 Polysaccharide deacetylase NLHDIDDJ_01079 PF00535 Glycosyl transferase family 2 NLHDIDDJ_01081 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_01084 PF09339 IclR helix-turn-helix domain NLHDIDDJ_01084 PF01614 Bacterial transcriptional regulator NLHDIDDJ_01085 PF00355 Rieske [2Fe-2S] domain NLHDIDDJ_01087 PF00355 Rieske [2Fe-2S] domain NLHDIDDJ_01089 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NLHDIDDJ_01090 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01090 PF14759 Reductase C-terminal NLHDIDDJ_01091 PF07690 Major Facilitator Superfamily NLHDIDDJ_01093 PF12697 Alpha/beta hydrolase family NLHDIDDJ_01095 PF01958 Domain of unknown function DUF108 NLHDIDDJ_01095 PF03447 Homoserine dehydrogenase, NAD binding domain NLHDIDDJ_01096 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01097 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NLHDIDDJ_01097 PF00205 Thiamine pyrophosphate enzyme, central domain NLHDIDDJ_01097 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NLHDIDDJ_01099 PF07690 Major Facilitator Superfamily NLHDIDDJ_01100 PF01327 Polypeptide deformylase NLHDIDDJ_01101 PF04960 Glutaminase NLHDIDDJ_01102 PF12833 Helix-turn-helix domain NLHDIDDJ_01102 PF02311 AraC-like ligand binding domain NLHDIDDJ_01103 PF07690 Major Facilitator Superfamily NLHDIDDJ_01104 PF01263 Aldose 1-epimerase NLHDIDDJ_01106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01106 PF03466 LysR substrate binding domain NLHDIDDJ_01108 PF07690 Major Facilitator Superfamily NLHDIDDJ_01109 PF00456 Transketolase, thiamine diphosphate binding domain NLHDIDDJ_01110 PF02779 Transketolase, pyrimidine binding domain NLHDIDDJ_01110 PF02780 Transketolase, C-terminal domain NLHDIDDJ_01111 PF02574 Homocysteine S-methyltransferase NLHDIDDJ_01111 PF00809 Pterin binding enzyme NLHDIDDJ_01111 PF02607 B12 binding domain NLHDIDDJ_01111 PF02310 B12 binding domain NLHDIDDJ_01111 PF02965 Vitamin B12 dependent methionine synthase, activation domain NLHDIDDJ_01112 PF01384 Phosphate transporter family NLHDIDDJ_01113 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_01116 PF03781 Sulfatase-modifying factor enzyme 1 NLHDIDDJ_01117 PF00884 Sulfatase NLHDIDDJ_01119 PF01521 Iron-sulphur cluster biosynthesis NLHDIDDJ_01119 PF01106 NifU-like domain NLHDIDDJ_01120 PF00593 TonB dependent receptor NLHDIDDJ_01120 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_01122 PF00561 alpha/beta hydrolase fold NLHDIDDJ_01123 PF00484 Carbonic anhydrase NLHDIDDJ_01124 PF13472 GDSL-like Lipase/Acylhydrolase family NLHDIDDJ_01125 PF00005 ABC transporter NLHDIDDJ_01127 PF01694 Rhomboid family NLHDIDDJ_01128 PF00912 Transglycosylase NLHDIDDJ_01129 PF02503 Polyphosphate kinase middle domain NLHDIDDJ_01129 PF13090 Polyphosphate kinase C-terminal domain 2 NLHDIDDJ_01129 PF13089 Polyphosphate kinase N-terminal domain NLHDIDDJ_01129 PF17941 Polyphosphate kinase C-terminal domain 1 NLHDIDDJ_01131 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01131 PF03466 LysR substrate binding domain NLHDIDDJ_01132 PF00561 alpha/beta hydrolase fold NLHDIDDJ_01133 PF18113 Rubredoxin binding C-terminal domain NLHDIDDJ_01133 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01134 PF00301 Rubredoxin NLHDIDDJ_01137 PF00152 tRNA synthetases class II (D, K and N) NLHDIDDJ_01137 PF01336 OB-fold nucleic acid binding domain NLHDIDDJ_01138 PF14052 Capsule assembly protein Wzi NLHDIDDJ_01140 PF01507 Phosphoadenosine phosphosulfate reductase family NLHDIDDJ_01141 PF00009 Elongation factor Tu GTP binding domain NLHDIDDJ_01144 PF03600 Citrate transporter NLHDIDDJ_01145 PF00571 CBS domain NLHDIDDJ_01145 PF03471 Transporter associated domain NLHDIDDJ_01145 PF01595 Cyclin M transmembrane N-terminal domain NLHDIDDJ_01146 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01146 PF03466 LysR substrate binding domain NLHDIDDJ_01147 PF00463 Isocitrate lyase family NLHDIDDJ_01150 PF01774 UreD urease accessory protein NLHDIDDJ_01151 PF00547 Urease, gamma subunit NLHDIDDJ_01152 PF00699 Urease beta subunit NLHDIDDJ_01153 PF01979 Amidohydrolase family NLHDIDDJ_01153 PF00449 Urease alpha-subunit, N-terminal domain NLHDIDDJ_01154 PF05194 UreE urease accessory protein, C-terminal domain NLHDIDDJ_01154 PF02814 UreE urease accessory protein, N-terminal domain NLHDIDDJ_01155 PF01730 UreF NLHDIDDJ_01156 PF02492 CobW/HypB/UreG, nucleotide-binding domain NLHDIDDJ_01159 PF03717 Penicillin-binding Protein dimerisation domain NLHDIDDJ_01159 PF00905 Penicillin binding protein transpeptidase domain NLHDIDDJ_01162 PF05191 Adenylate kinase, active site lid NLHDIDDJ_01163 PF10576 Iron-sulfur binding domain of endonuclease III NLHDIDDJ_01163 PF00633 Helix-hairpin-helix motif NLHDIDDJ_01163 PF00730 HhH-GPD superfamily base excision DNA repair protein NLHDIDDJ_01164 PF04060 Putative Fe-S cluster NLHDIDDJ_01165 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NLHDIDDJ_01165 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NLHDIDDJ_01167 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NLHDIDDJ_01168 PF02590 Predicted SPOUT methyltransferase NLHDIDDJ_01169 PF00004 ATPase family associated with various cellular activities (AAA) NLHDIDDJ_01169 PF05362 Lon protease (S16) C-terminal proteolytic domain NLHDIDDJ_01169 PF02190 ATP-dependent protease La (LON) substrate-binding domain NLHDIDDJ_01170 PF13018 Extended Signal Peptide of Type V secretion system NLHDIDDJ_01170 PF03895 YadA-like membrane anchor domain NLHDIDDJ_01170 PF05658 Head domain of trimeric autotransporter adhesin NLHDIDDJ_01170 PF05662 Coiled stalk of trimeric autotransporter adhesin NLHDIDDJ_01171 PF05662 Coiled stalk of trimeric autotransporter adhesin NLHDIDDJ_01171 PF03895 YadA-like membrane anchor domain NLHDIDDJ_01171 PF05658 Head domain of trimeric autotransporter adhesin NLHDIDDJ_01171 PF13018 Extended Signal Peptide of Type V secretion system NLHDIDDJ_01172 PF00691 OmpA family NLHDIDDJ_01172 PF04355 SmpA / OmlA family NLHDIDDJ_01173 PF01812 5-formyltetrahydrofolate cyclo-ligase family NLHDIDDJ_01187 PF01726 LexA DNA binding domain NLHDIDDJ_01187 PF00717 Peptidase S24-like NLHDIDDJ_01224 PF01551 Peptidase family M23 NLHDIDDJ_01224 PF10145 Phage-related minor tail protein NLHDIDDJ_01224 PF01464 Transglycosylase SLT domain NLHDIDDJ_01234 PF08019 Phosphoethanolamine transferase EptA/EptB NLHDIDDJ_01234 PF00884 Sulfatase NLHDIDDJ_01241 PF05195 Aminopeptidase P, N-terminal domain NLHDIDDJ_01241 PF00557 Metallopeptidase family M24 NLHDIDDJ_01242 PF01494 FAD binding domain NLHDIDDJ_01243 PF01494 FAD binding domain NLHDIDDJ_01245 PF13411 MerR HTH family regulatory protein NLHDIDDJ_01247 PF01810 LysE type translocator NLHDIDDJ_01248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01248 PF03466 LysR substrate binding domain NLHDIDDJ_01250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NLHDIDDJ_01251 PF02021 Uncharacterised protein family UPF0102 NLHDIDDJ_01252 PF04972 BON domain NLHDIDDJ_01254 PF09297 NADH pyrophosphatase zinc ribbon domain NLHDIDDJ_01254 PF00293 NUDIX domain NLHDIDDJ_01256 PF00929 Exonuclease NLHDIDDJ_01257 PF01476 LysM domain NLHDIDDJ_01257 PF01464 Transglycosylase SLT domain NLHDIDDJ_01257 PF01476 LysM domain NLHDIDDJ_01257 PF01464 Transglycosylase SLT domain NLHDIDDJ_01258 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NLHDIDDJ_01259 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01260 PF12911 N-terminal TM domain of oligopeptide transport permease C NLHDIDDJ_01260 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01261 PF00005 ABC transporter NLHDIDDJ_01261 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NLHDIDDJ_01262 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01262 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NLHDIDDJ_01264 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_01264 PF00593 TonB dependent receptor NLHDIDDJ_01266 PF00929 Exonuclease NLHDIDDJ_01267 PF01979 Amidohydrolase family NLHDIDDJ_01268 PF00360 Phytochrome region NLHDIDDJ_01268 PF01590 GAF domain NLHDIDDJ_01268 PF00563 EAL domain NLHDIDDJ_01268 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_01269 PF00764 Arginosuccinate synthase NLHDIDDJ_01270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NLHDIDDJ_01270 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01273 PF00589 Phage integrase family NLHDIDDJ_01273 PF13356 Arm DNA-binding domain NLHDIDDJ_01304 PF05987 Bacterial protein of unknown function (DUF898) NLHDIDDJ_01305 PF03180 NLPA lipoprotein NLHDIDDJ_01308 PF03783 Curli production assembly/transport component CsgG NLHDIDDJ_01310 PF05643 Putative bacterial lipoprotein (DUF799) NLHDIDDJ_01312 PF00324 Amino acid permease NLHDIDDJ_01313 PF01266 FAD dependent oxidoreductase NLHDIDDJ_01314 PF00324 Amino acid permease NLHDIDDJ_01316 PF07729 FCD domain NLHDIDDJ_01316 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_01318 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01320 PF00202 Aminotransferase class-III NLHDIDDJ_01321 PF04958 Arginine N-succinyltransferase beta subunit NLHDIDDJ_01322 PF00324 Amino acid permease NLHDIDDJ_01323 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01324 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NLHDIDDJ_01324 PF12833 Helix-turn-helix domain NLHDIDDJ_01325 PF00892 EamA-like transporter family NLHDIDDJ_01326 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NLHDIDDJ_01326 PF08666 SAF domain NLHDIDDJ_01327 PF07690 Major Facilitator Superfamily NLHDIDDJ_01328 PF13378 Enolase C-terminal domain-like NLHDIDDJ_01329 PF00701 Dihydrodipicolinate synthetase family NLHDIDDJ_01330 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01331 PF07729 FCD domain NLHDIDDJ_01331 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_01332 PF07519 Tannase and feruloyl esterase NLHDIDDJ_01335 PF03573 outer membrane porin, OprD family NLHDIDDJ_01336 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_01336 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_01336 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01338 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01339 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_01340 PF07690 Major Facilitator Superfamily NLHDIDDJ_01343 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_01343 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_01344 PF00355 Rieske [2Fe-2S] domain NLHDIDDJ_01346 PF03781 Sulfatase-modifying factor enzyme 1 NLHDIDDJ_01347 PF00884 Sulfatase NLHDIDDJ_01348 PF07690 Major Facilitator Superfamily NLHDIDDJ_01349 PF03573 outer membrane porin, OprD family NLHDIDDJ_01350 PF05199 GMC oxidoreductase NLHDIDDJ_01351 PF07859 alpha/beta hydrolase fold NLHDIDDJ_01352 PF00106 short chain dehydrogenase NLHDIDDJ_01353 PF00743 Flavin-binding monooxygenase-like NLHDIDDJ_01354 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NLHDIDDJ_01354 PF12833 Helix-turn-helix domain NLHDIDDJ_01355 PF04072 Leucine carboxyl methyltransferase NLHDIDDJ_01356 PF00743 Flavin-binding monooxygenase-like NLHDIDDJ_01357 PF00106 short chain dehydrogenase NLHDIDDJ_01359 PF17932 Tetracyclin repressor-like, C-terminal domain NLHDIDDJ_01359 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_01360 PF02678 Pirin NLHDIDDJ_01360 PF17954 Quercetinase C-terminal cupin domain NLHDIDDJ_01362 PF00106 short chain dehydrogenase NLHDIDDJ_01363 PF00743 Flavin-binding monooxygenase-like NLHDIDDJ_01365 PF00860 Permease family NLHDIDDJ_01366 PF00962 Adenosine/AMP deaminase NLHDIDDJ_01367 PF01292 Prokaryotic cytochrome b561 NLHDIDDJ_01369 PF01351 Ribonuclease HII NLHDIDDJ_01370 PF02599 Global regulator protein family NLHDIDDJ_01371 PF01842 ACT domain NLHDIDDJ_01371 PF13840 ACT domain NLHDIDDJ_01371 PF00696 Amino acid kinase family NLHDIDDJ_01372 PF02272 DHHA1 domain NLHDIDDJ_01372 PF01411 tRNA synthetases class II (A) NLHDIDDJ_01372 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NLHDIDDJ_01373 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NLHDIDDJ_01373 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NLHDIDDJ_01374 PF13393 Histidyl-tRNA synthetase NLHDIDDJ_01375 PF00709 Adenylosuccinate synthetase NLHDIDDJ_01378 PF00248 Aldo/keto reductase family NLHDIDDJ_01379 PF00027 Cyclic nucleotide-binding domain NLHDIDDJ_01379 PF13545 Crp-like helix-turn-helix domain NLHDIDDJ_01380 PF02566 OsmC-like protein NLHDIDDJ_01383 PF10431 C-terminal, D2-small domain, of ClpB protein NLHDIDDJ_01383 PF02861 Clp amino terminal domain, pathogenicity island component NLHDIDDJ_01383 PF17871 AAA lid domain NLHDIDDJ_01383 PF00004 ATPase family associated with various cellular activities (AAA) NLHDIDDJ_01383 PF07724 AAA domain (Cdc48 subfamily) NLHDIDDJ_01386 PF10672 S-adenosylmethionine-dependent methyltransferase NLHDIDDJ_01386 PF02926 THUMP domain NLHDIDDJ_01386 PF01170 Putative RNA methylase family UPF0020 NLHDIDDJ_01388 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NLHDIDDJ_01388 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NLHDIDDJ_01389 PF01979 Amidohydrolase family NLHDIDDJ_01390 PF01389 OmpA-like transmembrane domain NLHDIDDJ_01390 PF00691 OmpA family NLHDIDDJ_01392 PF13417 Glutathione S-transferase, N-terminal domain NLHDIDDJ_01392 PF00043 Glutathione S-transferase, C-terminal domain NLHDIDDJ_01394 PF00756 Putative esterase NLHDIDDJ_01394 PF01476 LysM domain NLHDIDDJ_01397 PF02390 Putative methyltransferase NLHDIDDJ_01399 PF02798 Glutathione S-transferase, N-terminal domain NLHDIDDJ_01399 PF00043 Glutathione S-transferase, C-terminal domain NLHDIDDJ_01401 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01401 PF13192 Thioredoxin domain NLHDIDDJ_01405 PF10417 C-terminal domain of 1-Cys peroxiredoxin NLHDIDDJ_01405 PF00578 AhpC/TSA family NLHDIDDJ_01406 PF04408 Helicase associated domain (HA2) NLHDIDDJ_01406 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NLHDIDDJ_01406 PF00270 DEAD/DEAH box helicase NLHDIDDJ_01406 PF11898 Domain of unknown function (DUF3418) NLHDIDDJ_01406 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_01407 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NLHDIDDJ_01407 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NLHDIDDJ_01409 PF07690 Major Facilitator Superfamily NLHDIDDJ_01410 PF03594 Benzoate membrane transport protein NLHDIDDJ_01411 PF00106 short chain dehydrogenase NLHDIDDJ_01412 PF00970 Oxidoreductase FAD-binding domain NLHDIDDJ_01412 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_01412 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_01413 PF00866 Ring hydroxylating beta subunit NLHDIDDJ_01414 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NLHDIDDJ_01414 PF00355 Rieske [2Fe-2S] domain NLHDIDDJ_01415 PF03466 LysR substrate binding domain NLHDIDDJ_01415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01417 PF00403 Heavy-metal-associated domain NLHDIDDJ_01418 PF09278 MerR, DNA binding NLHDIDDJ_01418 PF00376 MerR family regulatory protein NLHDIDDJ_01425 PF02601 Exonuclease VII, large subunit NLHDIDDJ_01425 PF13742 OB-fold nucleic acid binding domain NLHDIDDJ_01432 PF01810 LysE type translocator NLHDIDDJ_01433 PF00313 'Cold-shock' DNA-binding domain NLHDIDDJ_01435 PF03807 NADP oxidoreductase coenzyme F420-dependent NLHDIDDJ_01435 PF14748 Pyrroline-5-carboxylate reductase dimerisation NLHDIDDJ_01440 PF07690 Major Facilitator Superfamily NLHDIDDJ_01441 PF01638 HxlR-like helix-turn-helix NLHDIDDJ_01448 PF09190 DALR domain NLHDIDDJ_01448 PF01406 tRNA synthetases class I (C) catalytic domain NLHDIDDJ_01449 PF01380 SIS domain NLHDIDDJ_01449 PF00571 CBS domain NLHDIDDJ_01452 PF03968 OstA-like protein NLHDIDDJ_01453 PF12399 Branched-chain amino acid ATP-binding cassette transporter NLHDIDDJ_01453 PF00005 ABC transporter NLHDIDDJ_01454 PF02321 Outer membrane efflux protein NLHDIDDJ_01455 PF00664 ABC transporter transmembrane region NLHDIDDJ_01455 PF00005 ABC transporter NLHDIDDJ_01455 PF03412 Peptidase C39 family NLHDIDDJ_01457 PF01205 Uncharacterized protein family UPF0029 NLHDIDDJ_01458 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_01460 PF01596 O-methyltransferase NLHDIDDJ_01462 PF11953 Domain of unknown function (DUF3470) NLHDIDDJ_01462 PF00037 4Fe-4S binding domain NLHDIDDJ_01464 PF01624 MutS domain I NLHDIDDJ_01464 PF05188 MutS domain II NLHDIDDJ_01464 PF05192 MutS domain III NLHDIDDJ_01464 PF05190 MutS family domain IV NLHDIDDJ_01464 PF00488 MutS domain V NLHDIDDJ_01465 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_01466 PF00892 EamA-like transporter family NLHDIDDJ_01467 PF03707 Bacterial signalling protein N terminal repeat NLHDIDDJ_01467 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_01467 PF00563 EAL domain NLHDIDDJ_01468 PF03279 Bacterial lipid A biosynthesis acyltransferase NLHDIDDJ_01470 PF07690 Major Facilitator Superfamily NLHDIDDJ_01474 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01474 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NLHDIDDJ_01479 PF03466 LysR substrate binding domain NLHDIDDJ_01479 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01480 PF01566 Natural resistance-associated macrophage protein NLHDIDDJ_01481 PF03746 LamB/YcsF family NLHDIDDJ_01482 PF07286 Protein of unknown function (DUF1445) NLHDIDDJ_01484 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NLHDIDDJ_01484 PF00364 Biotin-requiring enzyme NLHDIDDJ_01484 PF02785 Biotin carboxylase C-terminal domain NLHDIDDJ_01484 PF00289 Biotin carboxylase, N-terminal domain NLHDIDDJ_01485 PF00654 Voltage gated chloride channel NLHDIDDJ_01486 PF00226 DnaJ domain NLHDIDDJ_01486 PF01556 DnaJ C terminal domain NLHDIDDJ_01486 PF00684 DnaJ central domain NLHDIDDJ_01487 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_01489 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_01489 PF13823 Alcohol dehydrogenase GroES-associated NLHDIDDJ_01489 PF00107 Zinc-binding dehydrogenase NLHDIDDJ_01492 PF00289 Biotin carboxylase, N-terminal domain NLHDIDDJ_01492 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NLHDIDDJ_01492 PF02785 Biotin carboxylase C-terminal domain NLHDIDDJ_01493 PF02525 Flavodoxin-like fold NLHDIDDJ_01494 PF01638 HxlR-like helix-turn-helix NLHDIDDJ_01496 PF01402 Ribbon-helix-helix protein, copG family NLHDIDDJ_01496 PF08753 NikR C terminal nickel binding domain NLHDIDDJ_01497 PF01425 Amidase NLHDIDDJ_01498 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLHDIDDJ_01499 PF00005 ABC transporter NLHDIDDJ_01504 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NLHDIDDJ_01507 PF05947 Type VI secretion system, TssF NLHDIDDJ_01510 PF06744 Type VI secretion protein IcmF C-terminal NLHDIDDJ_01510 PF14331 ImcF-related N-terminal domain NLHDIDDJ_01510 PF06761 Intracellular multiplication and human macrophage-killing NLHDIDDJ_01512 PF00691 OmpA family NLHDIDDJ_01512 PF01389 OmpA-like transmembrane domain NLHDIDDJ_01514 PF10431 C-terminal, D2-small domain, of ClpB protein NLHDIDDJ_01514 PF17871 AAA lid domain NLHDIDDJ_01514 PF07724 AAA domain (Cdc48 subfamily) NLHDIDDJ_01514 PF00004 ATPase family associated with various cellular activities (AAA) NLHDIDDJ_01515 PF06812 ImpA, N-terminal, type VI secretion system NLHDIDDJ_01516 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NLHDIDDJ_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01520 PF03466 LysR substrate binding domain NLHDIDDJ_01522 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NLHDIDDJ_01523 PF07690 Major Facilitator Superfamily NLHDIDDJ_01528 PF02677 Epoxyqueuosine reductase QueH NLHDIDDJ_01530 PF00376 MerR family regulatory protein NLHDIDDJ_01530 PF09278 MerR, DNA binding NLHDIDDJ_01533 PF00701 Dihydrodipicolinate synthetase family NLHDIDDJ_01535 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_01536 PF05544 Proline racemase NLHDIDDJ_01537 PF01266 FAD dependent oxidoreductase NLHDIDDJ_01539 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01539 PF04324 BFD-like [2Fe-2S] binding domain NLHDIDDJ_01541 PF00083 Sugar (and other) transporter NLHDIDDJ_01542 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01543 PF13520 Amino acid permease NLHDIDDJ_01544 PF03315 Serine dehydratase beta chain NLHDIDDJ_01544 PF03313 Serine dehydratase alpha chain NLHDIDDJ_01545 PF01575 MaoC like domain NLHDIDDJ_01545 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01546 PF05138 Phenylacetic acid catabolic protein NLHDIDDJ_01547 PF06243 Phenylacetic acid degradation B NLHDIDDJ_01548 PF05138 Phenylacetic acid catabolic protein NLHDIDDJ_01549 PF01883 Iron-sulfur cluster assembly protein NLHDIDDJ_01550 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_01550 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_01550 PF00970 Oxidoreductase FAD-binding domain NLHDIDDJ_01551 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_01552 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_01553 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NLHDIDDJ_01553 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NLHDIDDJ_01553 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01554 PF02803 Thiolase, C-terminal domain NLHDIDDJ_01554 PF00108 Thiolase, N-terminal domain NLHDIDDJ_01555 PF00501 AMP-binding enzyme NLHDIDDJ_01555 PF14535 AMP-binding enzyme C-terminal domain NLHDIDDJ_01556 PF07848 PaaX-like protein NLHDIDDJ_01556 PF08223 PaaX-like protein C-terminal domain NLHDIDDJ_01557 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_01558 PF03061 Thioesterase superfamily NLHDIDDJ_01565 PF00694 Aconitase C-terminal domain NLHDIDDJ_01566 PF00330 Aconitase family (aconitate hydratase) NLHDIDDJ_01568 PF02515 CoA-transferase family III NLHDIDDJ_01569 PF00682 HMGL-like NLHDIDDJ_01570 PF07690 Major Facilitator Superfamily NLHDIDDJ_01571 PF00199 Catalase NLHDIDDJ_01572 PF01292 Prokaryotic cytochrome b561 NLHDIDDJ_01576 PF12697 Alpha/beta hydrolase family NLHDIDDJ_01577 PF01613 Flavin reductase like domain NLHDIDDJ_01578 PF00296 Luciferase-like monooxygenase NLHDIDDJ_01579 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01580 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NLHDIDDJ_01582 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01583 PF02627 Carboxymuconolactone decarboxylase family NLHDIDDJ_01584 PF03466 LysR substrate binding domain NLHDIDDJ_01584 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01585 PF02525 Flavodoxin-like fold NLHDIDDJ_01586 PF09339 IclR helix-turn-helix domain NLHDIDDJ_01586 PF01614 Bacterial transcriptional regulator NLHDIDDJ_01587 PF01494 FAD binding domain NLHDIDDJ_01588 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_01588 PF07702 UTRA domain NLHDIDDJ_01590 PF08402 TOBE domain NLHDIDDJ_01590 PF00005 ABC transporter NLHDIDDJ_01591 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01592 PF01266 FAD dependent oxidoreductase NLHDIDDJ_01593 PF00266 Aminotransferase class-V NLHDIDDJ_01594 PF13419 Haloacid dehalogenase-like hydrolase NLHDIDDJ_01595 PF07690 Major Facilitator Superfamily NLHDIDDJ_01596 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_01596 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_01596 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01597 PF02515 CoA-transferase family III NLHDIDDJ_01598 PF09339 IclR helix-turn-helix domain NLHDIDDJ_01599 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_01600 PF03060 Nitronate monooxygenase NLHDIDDJ_01602 PF07690 Major Facilitator Superfamily NLHDIDDJ_01603 PF09339 IclR helix-turn-helix domain NLHDIDDJ_01604 PF00108 Thiolase, N-terminal domain NLHDIDDJ_01604 PF02803 Thiolase, C-terminal domain NLHDIDDJ_01605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NLHDIDDJ_01605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01605 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NLHDIDDJ_01607 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_01608 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_01608 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01608 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_01609 PF07690 Major Facilitator Superfamily NLHDIDDJ_01610 PF01144 Coenzyme A transferase NLHDIDDJ_01611 PF01144 Coenzyme A transferase NLHDIDDJ_01613 PF07690 Major Facilitator Superfamily NLHDIDDJ_01615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01615 PF12806 Acetyl-CoA dehydrogenase C-terminal like NLHDIDDJ_01615 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_01615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_01618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01618 PF03466 LysR substrate binding domain NLHDIDDJ_01619 PF00682 HMGL-like NLHDIDDJ_01620 PF00289 Biotin carboxylase, N-terminal domain NLHDIDDJ_01620 PF00364 Biotin-requiring enzyme NLHDIDDJ_01620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NLHDIDDJ_01620 PF02785 Biotin carboxylase C-terminal domain NLHDIDDJ_01620 PF18140 Propionyl-coenzyme A carboxylase BT domain NLHDIDDJ_01621 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_01622 PF01039 Carboxyl transferase domain NLHDIDDJ_01623 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_01623 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01623 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_01624 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_01625 PF00501 AMP-binding enzyme NLHDIDDJ_01625 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_01629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01629 PF03466 LysR substrate binding domain NLHDIDDJ_01637 PF18146 Damage-inducible protein CinA KH domain NLHDIDDJ_01637 PF02464 Competence-damaged protein NLHDIDDJ_01637 PF00994 Probable molybdopterin binding domain NLHDIDDJ_01639 PF00199 Catalase NLHDIDDJ_01639 PF06628 Catalase-related immune-responsive NLHDIDDJ_01639 PF18011 C-terminal domain found in long catalases NLHDIDDJ_01644 PF00717 Peptidase S24-like NLHDIDDJ_01646 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_01646 PF13404 AsnC-type helix-turn-helix domain NLHDIDDJ_01648 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_01648 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_01648 PF09308 LuxQ, periplasmic NLHDIDDJ_01648 PF00072 Response regulator receiver domain NLHDIDDJ_01649 PF00072 Response regulator receiver domain NLHDIDDJ_01651 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01652 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01653 PF00005 ABC transporter NLHDIDDJ_01654 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLHDIDDJ_01655 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLHDIDDJ_01656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01656 PF03466 LysR substrate binding domain NLHDIDDJ_01657 PF01810 LysE type translocator NLHDIDDJ_01658 PF00266 Aminotransferase class-V NLHDIDDJ_01660 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_01661 PF00581 Rhodanese-like domain NLHDIDDJ_01663 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01663 PF03466 LysR substrate binding domain NLHDIDDJ_01667 PF02798 Glutathione S-transferase, N-terminal domain NLHDIDDJ_01668 PF14834 Glutathione S-transferase, C-terminal domain NLHDIDDJ_01668 PF02798 Glutathione S-transferase, N-terminal domain NLHDIDDJ_01669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01669 PF03466 LysR substrate binding domain NLHDIDDJ_01670 PF03788 LrgA family NLHDIDDJ_01671 PF04172 LrgB-like family NLHDIDDJ_01672 PF00155 Aminotransferase class I and II NLHDIDDJ_01672 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_01675 PF07690 Major Facilitator Superfamily NLHDIDDJ_01677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01677 PF03466 LysR substrate binding domain NLHDIDDJ_01678 PF16957 Malonate decarboxylase, alpha subunit, transporter NLHDIDDJ_01679 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NLHDIDDJ_01680 PF06857 Malonate decarboxylase delta subunit (MdcD) NLHDIDDJ_01681 PF01039 Carboxyl transferase domain NLHDIDDJ_01683 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NLHDIDDJ_01684 PF00698 Acyl transferase domain NLHDIDDJ_01687 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01687 PF03466 LysR substrate binding domain NLHDIDDJ_01688 PF00155 Aminotransferase class I and II NLHDIDDJ_01688 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_01690 PF02322 Cytochrome bd terminal oxidase subunit II NLHDIDDJ_01691 PF01654 Cytochrome bd terminal oxidase subunit I NLHDIDDJ_01694 PF00296 Luciferase-like monooxygenase NLHDIDDJ_01695 PF00083 Sugar (and other) transporter NLHDIDDJ_01700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NLHDIDDJ_01701 PF00005 ABC transporter NLHDIDDJ_01702 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01703 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NLHDIDDJ_01704 PF01177 Asp/Glu/Hydantoin racemase NLHDIDDJ_01705 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NLHDIDDJ_01707 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01707 PF03466 LysR substrate binding domain NLHDIDDJ_01709 PF13382 Adenine deaminase C-terminal domain NLHDIDDJ_01709 PF01979 Amidohydrolase family NLHDIDDJ_01711 PF03960 ArsC family NLHDIDDJ_01712 PF01022 Bacterial regulatory protein, arsR family NLHDIDDJ_01713 PF01758 Sodium Bile acid symporter family NLHDIDDJ_01714 PF03466 LysR substrate binding domain NLHDIDDJ_01714 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01717 PF13192 Thioredoxin domain NLHDIDDJ_01717 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01720 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_01721 PF00588 SpoU rRNA Methylase family NLHDIDDJ_01722 PF01336 OB-fold nucleic acid binding domain NLHDIDDJ_01722 PF02811 PHP domain NLHDIDDJ_01722 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NLHDIDDJ_01722 PF07733 Bacterial DNA polymerase III alpha NTPase domain NLHDIDDJ_01722 PF14579 Helix-hairpin-helix motif NLHDIDDJ_01723 PF00710 Asparaginase, N-terminal NLHDIDDJ_01723 PF17763 Glutaminase/Asparaginase C-terminal domain NLHDIDDJ_01724 PF00375 Sodium:dicarboxylate symporter family NLHDIDDJ_01725 PF00155 Aminotransferase class I and II NLHDIDDJ_01726 PF01641 SelR domain NLHDIDDJ_01727 PF00255 Glutathione peroxidase NLHDIDDJ_01728 PF12852 Cupin NLHDIDDJ_01728 PF12833 Helix-turn-helix domain NLHDIDDJ_01730 PF00155 Aminotransferase class I and II NLHDIDDJ_01731 PF08335 GlnD PII-uridylyltransferase NLHDIDDJ_01731 PF01909 Nucleotidyltransferase domain NLHDIDDJ_01731 PF01966 HD domain NLHDIDDJ_01732 PF02222 ATP-grasp domain NLHDIDDJ_01734 PF05437 Branched-chain amino acid transport protein (AzlD) NLHDIDDJ_01735 PF03591 AzlC protein NLHDIDDJ_01740 PF01926 50S ribosome-binding GTPase NLHDIDDJ_01740 PF06071 Protein of unknown function (DUF933) NLHDIDDJ_01741 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01742 PF00005 ABC transporter NLHDIDDJ_01742 PF09383 NIL domain NLHDIDDJ_01743 PF03180 NLPA lipoprotein NLHDIDDJ_01744 PF03180 NLPA lipoprotein NLHDIDDJ_01745 PF00296 Luciferase-like monooxygenase NLHDIDDJ_01747 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_01747 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01750 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01751 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01752 PF00005 ABC transporter NLHDIDDJ_01754 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_01755 PF01709 Transcriptional regulator NLHDIDDJ_01757 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_01762 PF03466 LysR substrate binding domain NLHDIDDJ_01762 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01764 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NLHDIDDJ_01766 PF00892 EamA-like transporter family NLHDIDDJ_01770 PF13953 PapC C-terminal domain NLHDIDDJ_01770 PF13954 PapC N-terminal domain NLHDIDDJ_01770 PF00577 Outer membrane usher protein NLHDIDDJ_01771 PF02753 Pili assembly chaperone PapD, C-terminal domain NLHDIDDJ_01771 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NLHDIDDJ_01772 PF16970 Type-1 fimbrial protein, A NLHDIDDJ_01775 PF04055 Radical SAM superfamily NLHDIDDJ_01775 PF06968 Biotin and Thiamin Synthesis associated domain NLHDIDDJ_01776 PF08331 Domain of unknown function (DUF1730) NLHDIDDJ_01777 PF03853 YjeF-related protein N-terminus NLHDIDDJ_01777 PF01256 Carbohydrate kinase NLHDIDDJ_01778 PF02075 Crossover junction endodeoxyribonuclease RuvC NLHDIDDJ_01782 PF00905 Penicillin binding protein transpeptidase domain NLHDIDDJ_01786 PF00438 S-adenosylmethionine synthetase, N-terminal domain NLHDIDDJ_01786 PF02773 S-adenosylmethionine synthetase, C-terminal domain NLHDIDDJ_01786 PF02772 S-adenosylmethionine synthetase, central domain NLHDIDDJ_01787 PF02779 Transketolase, pyrimidine binding domain NLHDIDDJ_01787 PF02780 Transketolase, C-terminal domain NLHDIDDJ_01787 PF00456 Transketolase, thiamine diphosphate binding domain NLHDIDDJ_01789 PF04264 YceI-like domain NLHDIDDJ_01791 PF09992 Phosphodiester glycosidase NLHDIDDJ_01793 PF05958 tRNA (Uracil-5-)-methyltransferase NLHDIDDJ_01794 PF04229 GrpB protein NLHDIDDJ_01795 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_01795 PF01619 Proline dehydrogenase NLHDIDDJ_01795 PF14850 DNA-binding domain of Proline dehydrogenase NLHDIDDJ_01795 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NLHDIDDJ_01796 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_01797 PF00474 Sodium:solute symporter family NLHDIDDJ_01798 PF02146 Sir2 family NLHDIDDJ_01799 PF01597 Glycine cleavage H-protein NLHDIDDJ_01800 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NLHDIDDJ_01800 PF12833 Helix-turn-helix domain NLHDIDDJ_01802 PF00005 ABC transporter NLHDIDDJ_01802 PF00664 ABC transporter transmembrane region NLHDIDDJ_01803 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NLHDIDDJ_01804 PF06912 Protein of unknown function (DUF1275) NLHDIDDJ_01805 PF00375 Sodium:dicarboxylate symporter family NLHDIDDJ_01808 PF08007 Cupin superfamily protein NLHDIDDJ_01809 PF02545 Maf-like protein NLHDIDDJ_01811 PF00162 Phosphoglycerate kinase NLHDIDDJ_01813 PF01116 Fructose-bisphosphate aldolase class-II NLHDIDDJ_01814 PF09312 SurA N-terminal domain NLHDIDDJ_01814 PF00639 PPIC-type PPIASE domain NLHDIDDJ_01815 PF04453 LPS transport system D NLHDIDDJ_01815 PF03968 OstA-like protein NLHDIDDJ_01816 PF01636 Phosphotransferase enzyme family NLHDIDDJ_01817 PF00483 Nucleotidyl transferase NLHDIDDJ_01818 PF02527 rRNA small subunit methyltransferase G NLHDIDDJ_01819 PF13614 AAA domain NLHDIDDJ_01820 PF02195 ParB-like nuclease domain NLHDIDDJ_01820 PF17762 HTH domain found in ParB protein NLHDIDDJ_01821 PF01618 MotA/TolQ/ExbB proton channel family NLHDIDDJ_01823 PF00664 ABC transporter transmembrane region NLHDIDDJ_01823 PF00005 ABC transporter NLHDIDDJ_01824 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NLHDIDDJ_01825 PF02348 Cytidylyltransferase NLHDIDDJ_01826 PF09115 DNA polymerase III, delta subunit, C terminal NLHDIDDJ_01828 PF01026 TatD related DNase NLHDIDDJ_01831 PF07963 Prokaryotic N-terminal methylation motif NLHDIDDJ_01831 PF02501 Type II secretion system (T2SS), protein I NLHDIDDJ_01832 PF07963 Prokaryotic N-terminal methylation motif NLHDIDDJ_01832 PF11612 Type II secretion system (T2SS), protein J NLHDIDDJ_01833 PF03934 Type II secretion system (T2SS), protein K NLHDIDDJ_01835 PF03167 Uracil DNA glycosylase superfamily NLHDIDDJ_01837 PF14437 MafB19-like deaminase NLHDIDDJ_01839 PF02224 Cytidylate kinase NLHDIDDJ_01840 PF00575 S1 RNA binding domain NLHDIDDJ_01841 PF00216 Bacterial DNA-binding protein NLHDIDDJ_01843 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NLHDIDDJ_01845 PF00743 Flavin-binding monooxygenase-like NLHDIDDJ_01847 PF03969 AFG1-like ATPase NLHDIDDJ_01848 PF01274 Malate synthase NLHDIDDJ_01849 PF02472 Biopolymer transport protein ExbD/TolR NLHDIDDJ_01850 PF02472 Biopolymer transport protein ExbD/TolR NLHDIDDJ_01851 PF01618 MotA/TolQ/ExbB proton channel family NLHDIDDJ_01853 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_01853 PF00593 TonB dependent receptor NLHDIDDJ_01855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NLHDIDDJ_01857 PF01432 Peptidase family M3 NLHDIDDJ_01858 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01859 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01860 PF00005 ABC transporter NLHDIDDJ_01860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NLHDIDDJ_01863 PF00459 Inositol monophosphatase family NLHDIDDJ_01865 PF01649 Ribosomal protein S20 NLHDIDDJ_01866 PF13460 NAD(P)H-binding NLHDIDDJ_01867 PF03737 Aldolase/RraA NLHDIDDJ_01871 PF02559 CarD-like/TRCF domain NLHDIDDJ_01871 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_01871 PF03461 TRCF domain NLHDIDDJ_01871 PF17757 UvrB interaction domain NLHDIDDJ_01871 PF00270 DEAD/DEAH box helicase NLHDIDDJ_01873 PF00211 Adenylate and Guanylate cyclase catalytic domain NLHDIDDJ_01874 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_01875 PF00012 Hsp70 protein NLHDIDDJ_01876 PF07743 HSCB C-terminal oligomerisation domain NLHDIDDJ_01876 PF00226 DnaJ domain NLHDIDDJ_01877 PF01521 Iron-sulphur cluster biosynthesis NLHDIDDJ_01878 PF01592 NifU-like N terminal domain NLHDIDDJ_01879 PF00266 Aminotransferase class-V NLHDIDDJ_01880 PF02082 Transcriptional regulator NLHDIDDJ_01883 PF00216 Bacterial DNA-binding protein NLHDIDDJ_01884 PF00639 PPIC-type PPIASE domain NLHDIDDJ_01884 PF09312 SurA N-terminal domain NLHDIDDJ_01885 PF12833 Helix-turn-helix domain NLHDIDDJ_01885 PF12852 Cupin NLHDIDDJ_01886 PF00487 Fatty acid desaturase NLHDIDDJ_01887 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01887 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_01887 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_01888 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_01888 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_01888 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_01889 PF03109 ABC1 family NLHDIDDJ_01891 PF04073 Aminoacyl-tRNA editing domain NLHDIDDJ_01892 PF06276 Ferric iron reductase FhuF-like transporter NLHDIDDJ_01892 PF04183 IucA / IucC family NLHDIDDJ_01893 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NLHDIDDJ_01894 PF07690 Major Facilitator Superfamily NLHDIDDJ_01895 PF04183 IucA / IucC family NLHDIDDJ_01895 PF06276 Ferric iron reductase FhuF-like transporter NLHDIDDJ_01896 PF06276 Ferric iron reductase FhuF-like transporter NLHDIDDJ_01896 PF04183 IucA / IucC family NLHDIDDJ_01898 PF03737 Aldolase/RraA NLHDIDDJ_01899 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_01899 PF00593 TonB dependent receptor NLHDIDDJ_01904 PF13419 Haloacid dehalogenase-like hydrolase NLHDIDDJ_01906 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NLHDIDDJ_01907 PF02277 Phosphoribosyltransferase NLHDIDDJ_01908 PF00300 Histidine phosphatase superfamily (branch 1) NLHDIDDJ_01910 PF02654 Cobalamin-5-phosphate synthase NLHDIDDJ_01911 PF00793 DAHP synthetase I family NLHDIDDJ_01912 PF01925 Sulfite exporter TauE/SafE NLHDIDDJ_01916 PF00593 TonB dependent receptor NLHDIDDJ_01916 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_01917 PF02684 Lipid-A-disaccharide synthetase NLHDIDDJ_01919 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_01920 PF00005 ABC transporter NLHDIDDJ_01927 PF01230 HIT domain NLHDIDDJ_01933 PF08241 Methyltransferase domain NLHDIDDJ_01934 PF00561 alpha/beta hydrolase fold NLHDIDDJ_01935 PF01053 Cys/Met metabolism PLP-dependent enzyme NLHDIDDJ_01937 PF02575 YbaB/EbfC DNA-binding family NLHDIDDJ_01938 PF02132 RecR protein NLHDIDDJ_01938 PF13662 Toprim domain NLHDIDDJ_01939 PF00570 HRDC domain NLHDIDDJ_01939 PF01612 3'-5' exonuclease NLHDIDDJ_01943 PF05166 YcgL domain NLHDIDDJ_01945 PF00004 ATPase family associated with various cellular activities (AAA) NLHDIDDJ_01945 PF17862 AAA+ lid domain NLHDIDDJ_01945 PF01434 Peptidase family M41 NLHDIDDJ_01947 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_01948 PF05175 Methyltransferase small domain NLHDIDDJ_01949 PF01264 Chorismate synthase NLHDIDDJ_01950 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_01950 PF08448 PAS fold NLHDIDDJ_01953 PF04055 Radical SAM superfamily NLHDIDDJ_01954 PF00676 Dehydrogenase E1 component NLHDIDDJ_01955 PF02779 Transketolase, pyrimidine binding domain NLHDIDDJ_01955 PF02780 Transketolase, C-terminal domain NLHDIDDJ_01956 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NLHDIDDJ_01956 PF00364 Biotin-requiring enzyme NLHDIDDJ_01956 PF02817 e3 binding domain NLHDIDDJ_01957 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLHDIDDJ_01957 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_01958 PF00106 short chain dehydrogenase NLHDIDDJ_01959 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_01959 PF00107 Zinc-binding dehydrogenase NLHDIDDJ_01960 PF01062 Bestrophin, RFP-TM, chloride channel NLHDIDDJ_01961 PF02954 Bacterial regulatory protein, Fis family NLHDIDDJ_01961 PF00072 Response regulator receiver domain NLHDIDDJ_01961 PF00158 Sigma-54 interaction domain NLHDIDDJ_01962 PF04273 Putative phosphatase (DUF442) NLHDIDDJ_01962 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_01963 PF04273 Putative phosphatase (DUF442) NLHDIDDJ_01963 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_01964 PF01925 Sulfite exporter TauE/SafE NLHDIDDJ_01967 PF06445 GyrI-like small molecule binding domain NLHDIDDJ_01967 PF12833 Helix-turn-helix domain NLHDIDDJ_01968 PF01638 HxlR-like helix-turn-helix NLHDIDDJ_01969 PF02525 Flavodoxin-like fold NLHDIDDJ_01971 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_01971 PF07702 UTRA domain NLHDIDDJ_01974 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NLHDIDDJ_01975 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_01976 PF00005 ABC transporter NLHDIDDJ_01979 PF00083 Sugar (and other) transporter NLHDIDDJ_01980 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_01980 PF00593 TonB dependent receptor NLHDIDDJ_01981 PF00206 Lyase NLHDIDDJ_01981 PF10415 Fumarase C C-terminus NLHDIDDJ_01984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01984 PF03466 LysR substrate binding domain NLHDIDDJ_01985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01985 PF03466 LysR substrate binding domain NLHDIDDJ_01986 PF00108 Thiolase, N-terminal domain NLHDIDDJ_01986 PF02803 Thiolase, C-terminal domain NLHDIDDJ_01987 PF02667 Short chain fatty acid transporter NLHDIDDJ_01988 PF01144 Coenzyme A transferase NLHDIDDJ_01989 PF01144 Coenzyme A transferase NLHDIDDJ_01990 PF03466 LysR substrate binding domain NLHDIDDJ_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_01998 PF12833 Helix-turn-helix domain NLHDIDDJ_01998 PF06719 AraC-type transcriptional regulator N-terminus NLHDIDDJ_01999 PF07690 Major Facilitator Superfamily NLHDIDDJ_02000 PF01738 Dienelactone hydrolase family NLHDIDDJ_02002 PF17885 Styrene monooxygenase A putative substrate binding domain NLHDIDDJ_02003 PF01613 Flavin reductase like domain NLHDIDDJ_02005 PF12833 Helix-turn-helix domain NLHDIDDJ_02005 PF14525 AraC-binding-like domain NLHDIDDJ_02006 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_02006 PF00970 Oxidoreductase FAD-binding domain NLHDIDDJ_02006 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_02007 PF00866 Ring hydroxylating beta subunit NLHDIDDJ_02008 PF00355 Rieske [2Fe-2S] domain NLHDIDDJ_02008 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NLHDIDDJ_02009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02009 PF03459 TOBE domain NLHDIDDJ_02011 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02012 PF03459 TOBE domain NLHDIDDJ_02012 PF00005 ABC transporter NLHDIDDJ_02013 PF00106 short chain dehydrogenase NLHDIDDJ_02014 PF00550 Phosphopantetheine attachment site NLHDIDDJ_02014 PF00857 Isochorismatase family NLHDIDDJ_02016 PF00149 Calcineurin-like phosphoesterase NLHDIDDJ_02017 PF13089 Polyphosphate kinase N-terminal domain NLHDIDDJ_02017 PF17941 Polyphosphate kinase C-terminal domain 1 NLHDIDDJ_02017 PF13090 Polyphosphate kinase C-terminal domain 2 NLHDIDDJ_02017 PF02503 Polyphosphate kinase middle domain NLHDIDDJ_02018 PF12706 Beta-lactamase superfamily domain NLHDIDDJ_02019 PF03070 TENA/THI-4/PQQC family NLHDIDDJ_02020 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NLHDIDDJ_02021 PF04055 Radical SAM superfamily NLHDIDDJ_02021 PF13186 Iron-sulfur cluster-binding domain NLHDIDDJ_02022 PF01244 Membrane dipeptidase (Peptidase family M19) NLHDIDDJ_02026 PF13091 PLD-like domain NLHDIDDJ_02032 PF00199 Catalase NLHDIDDJ_02034 PF00107 Zinc-binding dehydrogenase NLHDIDDJ_02034 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_02037 PF00577 Outer membrane usher protein NLHDIDDJ_02037 PF13953 PapC C-terminal domain NLHDIDDJ_02037 PF13954 PapC N-terminal domain NLHDIDDJ_02038 PF02753 Pili assembly chaperone PapD, C-terminal domain NLHDIDDJ_02038 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NLHDIDDJ_02039 PF16970 Type-1 fimbrial protein, A NLHDIDDJ_02043 PF01266 FAD dependent oxidoreductase NLHDIDDJ_02046 PF01593 Flavin containing amine oxidoreductase NLHDIDDJ_02047 PF00743 Flavin-binding monooxygenase-like NLHDIDDJ_02048 PF12146 Serine aminopeptidase, S33 NLHDIDDJ_02049 PF02321 Outer membrane efflux protein NLHDIDDJ_02050 PF00873 AcrB/AcrD/AcrF family NLHDIDDJ_02051 PF00529 HlyD membrane-fusion protein of T1SS NLHDIDDJ_02051 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_02052 PF00072 Response regulator receiver domain NLHDIDDJ_02052 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_02053 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_02053 PF16527 Two-component sensor protein CpxA, periplasmic domain NLHDIDDJ_02053 PF00672 HAMP domain NLHDIDDJ_02053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_02056 PF02311 AraC-like ligand binding domain NLHDIDDJ_02056 PF12833 Helix-turn-helix domain NLHDIDDJ_02057 PF12146 Serine aminopeptidase, S33 NLHDIDDJ_02061 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family NLHDIDDJ_02063 PF13673 Acetyltransferase (GNAT) domain NLHDIDDJ_02065 PF01725 Ham1 family NLHDIDDJ_02066 PF00962 Adenosine/AMP deaminase NLHDIDDJ_02069 PF02824 TGS domain NLHDIDDJ_02069 PF13291 ACT domain NLHDIDDJ_02069 PF04607 Region found in RelA / SpoT proteins NLHDIDDJ_02071 PF01975 Survival protein SurE NLHDIDDJ_02076 PF07690 Major Facilitator Superfamily NLHDIDDJ_02077 PF13533 Biotin-lipoyl like NLHDIDDJ_02080 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NLHDIDDJ_02081 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NLHDIDDJ_02081 PF14572 Phosphoribosyl synthetase-associated domain NLHDIDDJ_02085 PF00005 ABC transporter NLHDIDDJ_02086 PF01032 FecCD transport family NLHDIDDJ_02088 PF00107 Zinc-binding dehydrogenase NLHDIDDJ_02088 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_02089 PF12833 Helix-turn-helix domain NLHDIDDJ_02089 PF06719 AraC-type transcriptional regulator N-terminus NLHDIDDJ_02090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NLHDIDDJ_02090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NLHDIDDJ_02091 PF07690 Major Facilitator Superfamily NLHDIDDJ_02092 PF01370 NAD dependent epimerase/dehydratase family NLHDIDDJ_02093 PF03466 LysR substrate binding domain NLHDIDDJ_02093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02095 PF00920 Dehydratase family NLHDIDDJ_02096 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_02099 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_02099 PF00529 HlyD membrane-fusion protein of T1SS NLHDIDDJ_02102 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02102 PF03466 LysR substrate binding domain NLHDIDDJ_02104 PF08450 SMP-30/Gluconolactonase/LRE-like region NLHDIDDJ_02105 PF07702 UTRA domain NLHDIDDJ_02105 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_02107 PF04909 Amidohydrolase NLHDIDDJ_02108 PF07690 Major Facilitator Superfamily NLHDIDDJ_02118 PF00501 AMP-binding enzyme NLHDIDDJ_02118 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_02120 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_02120 PF12806 Acetyl-CoA dehydrogenase C-terminal like NLHDIDDJ_02120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_02120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_02121 PF01575 MaoC like domain NLHDIDDJ_02122 PF00106 short chain dehydrogenase NLHDIDDJ_02125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02125 PF03466 LysR substrate binding domain NLHDIDDJ_02126 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_02126 PF08359 YsiA-like protein, C-terminal region NLHDIDDJ_02127 PF12706 Beta-lactamase superfamily domain NLHDIDDJ_02129 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_02131 PF13411 MerR HTH family regulatory protein NLHDIDDJ_02134 PF00106 short chain dehydrogenase NLHDIDDJ_02135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NLHDIDDJ_02135 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_02136 PF00561 alpha/beta hydrolase fold NLHDIDDJ_02138 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_02140 PF07690 Major Facilitator Superfamily NLHDIDDJ_02141 PF00920 Dehydratase family NLHDIDDJ_02142 PF07729 FCD domain NLHDIDDJ_02142 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_02144 PF03466 LysR substrate binding domain NLHDIDDJ_02144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NLHDIDDJ_02145 PF13378 Enolase C-terminal domain-like NLHDIDDJ_02146 PF02426 Muconolactone delta-isomerase NLHDIDDJ_02147 PF00775 Dioxygenase NLHDIDDJ_02147 PF04444 Catechol dioxygenase N terminus NLHDIDDJ_02148 PF01144 Coenzyme A transferase NLHDIDDJ_02149 PF01144 Coenzyme A transferase NLHDIDDJ_02150 PF02803 Thiolase, C-terminal domain NLHDIDDJ_02150 PF00108 Thiolase, N-terminal domain NLHDIDDJ_02151 PF12146 Serine aminopeptidase, S33 NLHDIDDJ_02152 PF01804 Penicillin amidase NLHDIDDJ_02153 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_02155 PF01179 Copper amine oxidase, enzyme domain NLHDIDDJ_02155 PF02727 Copper amine oxidase, N2 domain NLHDIDDJ_02155 PF02728 Copper amine oxidase, N3 domain NLHDIDDJ_02155 PF07833 Copper amine oxidase N-terminal domain NLHDIDDJ_02156 PF02311 AraC-like ligand binding domain NLHDIDDJ_02156 PF12833 Helix-turn-helix domain NLHDIDDJ_02157 PF01613 Flavin reductase like domain NLHDIDDJ_02158 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_02158 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_02161 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NLHDIDDJ_02161 PF00355 Rieske [2Fe-2S] domain NLHDIDDJ_02164 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_02165 PF01425 Amidase NLHDIDDJ_02167 PF07690 Major Facilitator Superfamily NLHDIDDJ_02169 PF00106 short chain dehydrogenase NLHDIDDJ_02172 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_02172 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_02172 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_02173 PF03466 LysR substrate binding domain NLHDIDDJ_02173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02174 PF09339 IclR helix-turn-helix domain NLHDIDDJ_02174 PF01614 Bacterial transcriptional regulator NLHDIDDJ_02175 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_02177 PF04143 Sulphur transport NLHDIDDJ_02179 PF01011 PQQ enzyme repeat NLHDIDDJ_02179 PF13360 PQQ-like domain NLHDIDDJ_02180 PF04966 Carbohydrate-selective porin, OprB family NLHDIDDJ_02181 PF05048 Periplasmic copper-binding protein (NosD) NLHDIDDJ_02182 PF01487 Type I 3-dehydroquinase NLHDIDDJ_02183 PF00775 Dioxygenase NLHDIDDJ_02184 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NLHDIDDJ_02184 PF00775 Dioxygenase NLHDIDDJ_02185 PF02627 Carboxymuconolactone decarboxylase family NLHDIDDJ_02186 PF07690 Major Facilitator Superfamily NLHDIDDJ_02187 PF00561 alpha/beta hydrolase fold NLHDIDDJ_02188 PF10397 Adenylosuccinate lyase C-terminus NLHDIDDJ_02188 PF00206 Lyase NLHDIDDJ_02189 PF00108 Thiolase, N-terminal domain NLHDIDDJ_02189 PF02803 Thiolase, C-terminal domain NLHDIDDJ_02190 PF01144 Coenzyme A transferase NLHDIDDJ_02191 PF01144 Coenzyme A transferase NLHDIDDJ_02192 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NLHDIDDJ_02193 PF04977 Septum formation initiator NLHDIDDJ_02194 PF04239 Protein of unknown function (DUF421) NLHDIDDJ_02195 PF00113 Enolase, C-terminal TIM barrel domain NLHDIDDJ_02195 PF03952 Enolase, N-terminal domain NLHDIDDJ_02196 PF00793 DAHP synthetase I family NLHDIDDJ_02197 PF06418 CTP synthase N-terminus NLHDIDDJ_02197 PF00117 Glutamine amidotransferase class-I NLHDIDDJ_02203 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_02203 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NLHDIDDJ_02206 PF00793 DAHP synthetase I family NLHDIDDJ_02207 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NLHDIDDJ_02208 PF07724 AAA domain (Cdc48 subfamily) NLHDIDDJ_02208 PF00004 ATPase family associated with various cellular activities (AAA) NLHDIDDJ_02208 PF10431 C-terminal, D2-small domain, of ClpB protein NLHDIDDJ_02208 PF02861 Clp amino terminal domain, pathogenicity island component NLHDIDDJ_02208 PF17871 AAA lid domain NLHDIDDJ_02209 PF02617 ATP-dependent Clp protease adaptor protein ClpS NLHDIDDJ_02211 PF02774 Semialdehyde dehydrogenase, dimerisation domain NLHDIDDJ_02211 PF01118 Semialdehyde dehydrogenase, NAD binding domain NLHDIDDJ_02214 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NLHDIDDJ_02215 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_02215 PF00585 C-terminal regulatory domain of Threonine dehydratase NLHDIDDJ_02216 PF02080 TrkA-C domain NLHDIDDJ_02216 PF02254 TrkA-N domain NLHDIDDJ_02217 PF02386 Cation transport protein NLHDIDDJ_02218 PF02253 Phospholipase A1 NLHDIDDJ_02219 PF08367 Peptidase M16C associated NLHDIDDJ_02219 PF00675 Insulinase (Peptidase family M16) NLHDIDDJ_02219 PF05193 Peptidase M16 inactive domain NLHDIDDJ_02220 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_02220 PF00593 TonB dependent receptor NLHDIDDJ_02221 PF00294 pfkB family carbohydrate kinase NLHDIDDJ_02223 PF07290 Protein of unknown function (DUF1449) NLHDIDDJ_02225 PF01654 Cytochrome bd terminal oxidase subunit I NLHDIDDJ_02226 PF02322 Cytochrome bd terminal oxidase subunit II NLHDIDDJ_02227 PF08173 Membrane bound YbgT-like protein NLHDIDDJ_02229 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NLHDIDDJ_02231 PF00448 SRP54-type protein, GTPase domain NLHDIDDJ_02231 PF02881 SRP54-type protein, helical bundle domain NLHDIDDJ_02236 PF00478 IMP dehydrogenase / GMP reductase domain NLHDIDDJ_02236 PF00571 CBS domain NLHDIDDJ_02237 PF00202 Aminotransferase class-III NLHDIDDJ_02238 PF00462 Glutaredoxin NLHDIDDJ_02240 PF03466 LysR substrate binding domain NLHDIDDJ_02240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02241 PF00557 Metallopeptidase family M24 NLHDIDDJ_02242 PF05525 Branched-chain amino acid transport protein NLHDIDDJ_02247 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NLHDIDDJ_02247 PF02896 PEP-utilising enzyme, TIM barrel domain NLHDIDDJ_02247 PF00391 PEP-utilising enzyme, mobile domain NLHDIDDJ_02247 PF05524 PEP-utilising enzyme, N-terminal NLHDIDDJ_02247 PF00381 PTS HPr component phosphorylation site NLHDIDDJ_02248 PF00294 pfkB family carbohydrate kinase NLHDIDDJ_02249 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLHDIDDJ_02249 PF02378 Phosphotransferase system, EIIC NLHDIDDJ_02252 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_02252 PF00563 EAL domain NLHDIDDJ_02252 PF03707 Bacterial signalling protein N terminal repeat NLHDIDDJ_02254 PF07995 Glucose / Sorbosone dehydrogenase NLHDIDDJ_02255 PF02586 SOS response associated peptidase (SRAP) NLHDIDDJ_02256 PF01740 STAS domain NLHDIDDJ_02256 PF00916 Sulfate permease family NLHDIDDJ_02257 PF05922 Peptidase inhibitor I9 NLHDIDDJ_02257 PF00082 Subtilase family NLHDIDDJ_02259 PF00324 Amino acid permease NLHDIDDJ_02260 PF00266 Aminotransferase class-V NLHDIDDJ_02261 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_02266 PF13419 Haloacid dehalogenase-like hydrolase NLHDIDDJ_02267 PF01479 S4 domain NLHDIDDJ_02268 PF00154 recA bacterial DNA recombination protein NLHDIDDJ_02269 PF02631 RecX family NLHDIDDJ_02271 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NLHDIDDJ_02271 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_02272 PF07977 FabA-like domain NLHDIDDJ_02273 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_02273 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NLHDIDDJ_02275 PF07244 Surface antigen variable number repeat NLHDIDDJ_02275 PF01103 Surface antigen NLHDIDDJ_02276 PF13180 PDZ domain NLHDIDDJ_02276 PF17820 PDZ domain NLHDIDDJ_02276 PF02163 Peptidase family M50 NLHDIDDJ_02277 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NLHDIDDJ_02277 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NLHDIDDJ_02277 PF13288 DXP reductoisomerase C-terminal domain NLHDIDDJ_02279 PF01255 Putative undecaprenyl diphosphate synthase NLHDIDDJ_02280 PF01765 Ribosome recycling factor NLHDIDDJ_02281 PF00696 Amino acid kinase family NLHDIDDJ_02282 PF04055 Radical SAM superfamily NLHDIDDJ_02282 PF18693 TRAM domain NLHDIDDJ_02282 PF00919 Uncharacterized protein family UPF0004 NLHDIDDJ_02283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_02283 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_02283 PF00989 PAS fold NLHDIDDJ_02284 PF02954 Bacterial regulatory protein, Fis family NLHDIDDJ_02284 PF00072 Response regulator receiver domain NLHDIDDJ_02284 PF00158 Sigma-54 interaction domain NLHDIDDJ_02285 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_02286 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NLHDIDDJ_02286 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NLHDIDDJ_02288 PF02542 YgbB family NLHDIDDJ_02290 PF01266 FAD dependent oxidoreductase NLHDIDDJ_02294 PF10415 Fumarase C C-terminus NLHDIDDJ_02294 PF00206 Lyase NLHDIDDJ_02295 PF16363 GDP-mannose 4,6 dehydratase NLHDIDDJ_02296 PF02635 DsrE/DsrF-like family NLHDIDDJ_02300 PF00892 EamA-like transporter family NLHDIDDJ_02301 PF00155 Aminotransferase class I and II NLHDIDDJ_02301 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_02302 PF01638 HxlR-like helix-turn-helix NLHDIDDJ_02303 PF00994 Probable molybdopterin binding domain NLHDIDDJ_02303 PF03454 MoeA C-terminal region (domain IV) NLHDIDDJ_02303 PF03453 MoeA N-terminal region (domain I and II) NLHDIDDJ_02304 PF01967 MoaC family NLHDIDDJ_02304 PF00994 Probable molybdopterin binding domain NLHDIDDJ_02305 PF02391 MoaE protein NLHDIDDJ_02307 PF04055 Radical SAM superfamily NLHDIDDJ_02307 PF06463 Molybdenum Cofactor Synthesis C NLHDIDDJ_02308 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NLHDIDDJ_02308 PF00384 Molybdopterin oxidoreductase NLHDIDDJ_02308 PF01568 Molydopterin dinucleotide binding domain NLHDIDDJ_02309 PF12804 MobA-like NTP transferase domain NLHDIDDJ_02310 PF04324 BFD-like [2Fe-2S] binding domain NLHDIDDJ_02310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NLHDIDDJ_02310 PF00384 Molybdopterin oxidoreductase NLHDIDDJ_02310 PF01568 Molydopterin dinucleotide binding domain NLHDIDDJ_02311 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_02311 PF18267 Rubredoxin NAD+ reductase C-terminal domain NLHDIDDJ_02311 PF04324 BFD-like [2Fe-2S] binding domain NLHDIDDJ_02311 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NLHDIDDJ_02311 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NLHDIDDJ_02312 PF04324 BFD-like [2Fe-2S] binding domain NLHDIDDJ_02312 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NLHDIDDJ_02312 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NLHDIDDJ_02312 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_02312 PF18267 Rubredoxin NAD+ reductase C-terminal domain NLHDIDDJ_02312 PF13806 Rieske-like [2Fe-2S] domain NLHDIDDJ_02314 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_02314 PF00072 Response regulator receiver domain NLHDIDDJ_02315 PF00005 ABC transporter NLHDIDDJ_02316 PF00817 impB/mucB/samB family NLHDIDDJ_02316 PF11799 impB/mucB/samB family C-terminal domain NLHDIDDJ_02316 PF13438 Domain of unknown function (DUF4113) NLHDIDDJ_02317 PF01220 Dehydroquinase class II NLHDIDDJ_02318 PF00364 Biotin-requiring enzyme NLHDIDDJ_02319 PF00289 Biotin carboxylase, N-terminal domain NLHDIDDJ_02319 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NLHDIDDJ_02319 PF02785 Biotin carboxylase C-terminal domain NLHDIDDJ_02321 PF12832 MFS_1 like family NLHDIDDJ_02325 PF01645 Conserved region in glutamate synthase NLHDIDDJ_02330 PF01565 FAD binding domain NLHDIDDJ_02330 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NLHDIDDJ_02331 PF01451 Low molecular weight phosphotyrosine protein phosphatase NLHDIDDJ_02333 PF00465 Iron-containing alcohol dehydrogenase NLHDIDDJ_02334 PF03061 Thioesterase superfamily NLHDIDDJ_02335 PF05506 Domain of unknown function (DUF756) NLHDIDDJ_02335 PF04185 Phosphoesterase family NLHDIDDJ_02337 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NLHDIDDJ_02337 PF12169 DNA polymerase III subunits gamma and tau domain III NLHDIDDJ_02337 PF12170 DNA polymerase III tau subunit V interacting with alpha NLHDIDDJ_02338 PF07690 Major Facilitator Superfamily NLHDIDDJ_02341 PF01575 MaoC like domain NLHDIDDJ_02343 PF00108 Thiolase, N-terminal domain NLHDIDDJ_02343 PF02803 Thiolase, C-terminal domain NLHDIDDJ_02345 PF03466 LysR substrate binding domain NLHDIDDJ_02345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02346 PF00923 Transaldolase/Fructose-6-phosphate aldolase NLHDIDDJ_02347 PF01810 LysE type translocator NLHDIDDJ_02348 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_02349 PF03594 Benzoate membrane transport protein NLHDIDDJ_02350 PF02308 MgtC family NLHDIDDJ_02351 PF00689 Cation transporting ATPase, C-terminus NLHDIDDJ_02351 PF00690 Cation transporter/ATPase, N-terminus NLHDIDDJ_02356 PF00582 Universal stress protein family NLHDIDDJ_02357 PF00005 ABC transporter NLHDIDDJ_02357 PF12848 ABC transporter NLHDIDDJ_02361 PF00593 TonB dependent receptor NLHDIDDJ_02361 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_02367 PF00924 Mechanosensitive ion channel NLHDIDDJ_02368 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_02368 PF00593 TonB dependent receptor NLHDIDDJ_02369 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_02372 PF02224 Cytidylate kinase NLHDIDDJ_02374 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_02375 PF01817 Chorismate mutase type II NLHDIDDJ_02380 PF00577 Outer membrane usher protein NLHDIDDJ_02380 PF13954 PapC N-terminal domain NLHDIDDJ_02380 PF13953 PapC C-terminal domain NLHDIDDJ_02383 PF11940 Domain of unknown function (DUF3458) Ig-like fold NLHDIDDJ_02383 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NLHDIDDJ_02383 PF01433 Peptidase family M1 domain NLHDIDDJ_02386 PF02110 Hydroxyethylthiazole kinase family NLHDIDDJ_02387 PF06445 GyrI-like small molecule binding domain NLHDIDDJ_02389 PF05970 PIF1-like helicase NLHDIDDJ_02389 PF14493 Helix-turn-helix domain NLHDIDDJ_02390 PF00465 Iron-containing alcohol dehydrogenase NLHDIDDJ_02393 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_02394 PF13520 Amino acid permease NLHDIDDJ_02395 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NLHDIDDJ_02396 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NLHDIDDJ_02397 PF00117 Glutamine amidotransferase class-I NLHDIDDJ_02397 PF00958 GMP synthase C terminal domain NLHDIDDJ_02397 PF02540 NAD synthase NLHDIDDJ_02398 PF00749 tRNA synthetases class I (E and Q), catalytic domain NLHDIDDJ_02398 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NLHDIDDJ_02399 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NLHDIDDJ_02400 PF00149 Calcineurin-like phosphoesterase NLHDIDDJ_02402 PF00881 Nitroreductase family NLHDIDDJ_02405 PF01119 DNA mismatch repair protein, C-terminal domain NLHDIDDJ_02405 PF08676 MutL C terminal dimerisation domain NLHDIDDJ_02406 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NLHDIDDJ_02407 PF00849 RNA pseudouridylate synthase NLHDIDDJ_02407 PF01479 S4 domain NLHDIDDJ_02410 PF00849 RNA pseudouridylate synthase NLHDIDDJ_02410 PF01479 S4 domain NLHDIDDJ_02412 PF04284 Protein of unknown function (DUF441) NLHDIDDJ_02413 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02413 PF03466 LysR substrate binding domain NLHDIDDJ_02416 PF07690 Major Facilitator Superfamily NLHDIDDJ_02417 PF00520 Ion transport protein NLHDIDDJ_02417 PF00027 Cyclic nucleotide-binding domain NLHDIDDJ_02419 PF11791 Aconitate B N-terminal domain NLHDIDDJ_02419 PF06434 Aconitate hydratase 2 N-terminus NLHDIDDJ_02419 PF00330 Aconitase family (aconitate hydratase) NLHDIDDJ_02421 PF11799 impB/mucB/samB family C-terminal domain NLHDIDDJ_02421 PF00817 impB/mucB/samB family NLHDIDDJ_02421 PF13438 Domain of unknown function (DUF4113) NLHDIDDJ_02439 PF09669 Phage regulatory protein Rha (Phage_pRha) NLHDIDDJ_02439 PF10549 ORF11CD3 domain NLHDIDDJ_02463 PF00772 DnaB-like helicase N terminal domain NLHDIDDJ_02463 PF03796 DnaB-like helicase C terminal domain NLHDIDDJ_02488 PF17243 POTRA domain TamA domain 1 NLHDIDDJ_02488 PF07244 Surface antigen variable number repeat NLHDIDDJ_02488 PF01103 Surface antigen NLHDIDDJ_02489 PF07690 Major Facilitator Superfamily NLHDIDDJ_02490 PF03232 Ubiquinone biosynthesis protein COQ7 NLHDIDDJ_02492 PF00120 Glutamine synthetase, catalytic domain NLHDIDDJ_02493 PF00072 Response regulator receiver domain NLHDIDDJ_02493 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_02494 PF13493 Domain of unknown function (DUF4118) NLHDIDDJ_02494 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_02494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_02494 PF02702 Osmosensitive K+ channel His kinase sensor domain NLHDIDDJ_02495 PF02669 K+-transporting ATPase, c chain NLHDIDDJ_02497 PF03814 Potassium-transporting ATPase A subunit NLHDIDDJ_02500 PF03109 ABC1 family NLHDIDDJ_02501 PF00899 ThiF family NLHDIDDJ_02502 PF01613 Flavin reductase like domain NLHDIDDJ_02503 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_02503 PF00501 AMP-binding enzyme NLHDIDDJ_02504 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_02504 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_02504 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_02505 PF00106 short chain dehydrogenase NLHDIDDJ_02506 PF12833 Helix-turn-helix domain NLHDIDDJ_02507 PF09084 NMT1/THI5 like NLHDIDDJ_02508 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02509 PF13847 Methyltransferase domain NLHDIDDJ_02509 PF17827 PrmC N-terminal domain NLHDIDDJ_02510 PF03462 PCRF domain NLHDIDDJ_02510 PF00472 RF-1 domain NLHDIDDJ_02512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02512 PF03466 LysR substrate binding domain NLHDIDDJ_02515 PF00296 Luciferase-like monooxygenase NLHDIDDJ_02517 PF13994 PgaD-like protein NLHDIDDJ_02518 PF00535 Glycosyl transferase family 2 NLHDIDDJ_02519 PF14883 Hypothetical glycosyl hydrolase family 13 NLHDIDDJ_02519 PF01522 Polysaccharide deacetylase NLHDIDDJ_02521 PF03618 Kinase/pyrophosphorylase NLHDIDDJ_02522 PF00391 PEP-utilising enzyme, mobile domain NLHDIDDJ_02522 PF02896 PEP-utilising enzyme, TIM barrel domain NLHDIDDJ_02522 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NLHDIDDJ_02524 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NLHDIDDJ_02524 PF06481 COX Aromatic Rich Motif NLHDIDDJ_02525 PF00115 Cytochrome C and Quinol oxidase polypeptide I NLHDIDDJ_02526 PF00510 Cytochrome c oxidase subunit III NLHDIDDJ_02527 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NLHDIDDJ_02528 PF01040 UbiA prenyltransferase family NLHDIDDJ_02529 PF01250 Ribosomal protein S6 NLHDIDDJ_02530 PF01084 Ribosomal protein S18 NLHDIDDJ_02531 PF01281 Ribosomal protein L9, N-terminal domain NLHDIDDJ_02531 PF03948 Ribosomal protein L9, C-terminal domain NLHDIDDJ_02532 PF03796 DnaB-like helicase C terminal domain NLHDIDDJ_02532 PF00772 DnaB-like helicase N terminal domain NLHDIDDJ_02533 PF00842 Alanine racemase, C-terminal domain NLHDIDDJ_02533 PF01168 Alanine racemase, N-terminal domain NLHDIDDJ_02535 PF08379 Bacterial transglutaminase-like N-terminal region NLHDIDDJ_02535 PF01841 Transglutaminase-like superfamily NLHDIDDJ_02537 PF14403 Circularly permuted ATP-grasp type 2 NLHDIDDJ_02539 PF01134 Glucose inhibited division protein A NLHDIDDJ_02539 PF13932 GidA associated domain NLHDIDDJ_02543 PF02954 Bacterial regulatory protein, Fis family NLHDIDDJ_02544 PF01808 AICARFT/IMPCHase bienzyme NLHDIDDJ_02544 PF02142 MGS-like domain NLHDIDDJ_02545 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NLHDIDDJ_02545 PF02843 Phosphoribosylglycinamide synthetase, C domain NLHDIDDJ_02545 PF02844 Phosphoribosylglycinamide synthetase, N domain NLHDIDDJ_02546 PF03180 NLPA lipoprotein NLHDIDDJ_02547 PF00005 ABC transporter NLHDIDDJ_02547 PF09383 NIL domain NLHDIDDJ_02548 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02549 PF16123 Hydroxyacylglutathione hydrolase C-terminus NLHDIDDJ_02549 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_02551 PF00375 Sodium:dicarboxylate symporter family NLHDIDDJ_02555 PF07995 Glucose / Sorbosone dehydrogenase NLHDIDDJ_02556 PF00892 EamA-like transporter family NLHDIDDJ_02557 PF01177 Asp/Glu/Hydantoin racemase NLHDIDDJ_02561 PF00072 Response regulator receiver domain NLHDIDDJ_02561 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_02562 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_02562 PF08521 Two-component sensor kinase N-terminal NLHDIDDJ_02562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_02570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_02570 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_02570 PF00672 HAMP domain NLHDIDDJ_02571 PF00072 Response regulator receiver domain NLHDIDDJ_02571 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_02573 PF00576 HIUase/Transthyretin family NLHDIDDJ_02575 PF02470 MlaD protein NLHDIDDJ_02576 PF04403 Paraquat-inducible protein A NLHDIDDJ_02580 PF08946 Osmosensory transporter coiled coil NLHDIDDJ_02580 PF00083 Sugar (and other) transporter NLHDIDDJ_02590 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_02590 PF07729 FCD domain NLHDIDDJ_02592 PF02254 TrkA-N domain NLHDIDDJ_02592 PF00999 Sodium/hydrogen exchanger family NLHDIDDJ_02593 PF00356 Bacterial regulatory proteins, lacI family NLHDIDDJ_02594 PF00815 Histidinol dehydrogenase NLHDIDDJ_02597 PF00106 short chain dehydrogenase NLHDIDDJ_02598 PF00248 Aldo/keto reductase family NLHDIDDJ_02599 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02599 PF03466 LysR substrate binding domain NLHDIDDJ_02601 PF03616 Sodium/glutamate symporter NLHDIDDJ_02602 PF00561 alpha/beta hydrolase fold NLHDIDDJ_02607 PF04076 Bacterial OB fold (BOF) protein NLHDIDDJ_02609 PF13649 Methyltransferase domain NLHDIDDJ_02613 PF00324 Amino acid permease NLHDIDDJ_02614 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_02615 PF00202 Aminotransferase class-III NLHDIDDJ_02616 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02616 PF03466 LysR substrate binding domain NLHDIDDJ_02621 PF00069 Protein kinase domain NLHDIDDJ_02625 PF00814 Glycoprotease family NLHDIDDJ_02626 PF01165 Ribosomal protein S21 NLHDIDDJ_02627 PF09424 Yqey-like protein NLHDIDDJ_02628 PF01435 Peptidase family M48 NLHDIDDJ_02629 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NLHDIDDJ_02629 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NLHDIDDJ_02632 PF00156 Phosphoribosyl transferase domain NLHDIDDJ_02633 PF02674 Colicin V production protein NLHDIDDJ_02634 PF01180 Dihydroorotate dehydrogenase NLHDIDDJ_02638 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NLHDIDDJ_02638 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NLHDIDDJ_02639 PF00881 Nitroreductase family NLHDIDDJ_02641 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_02641 PF00270 DEAD/DEAH box helicase NLHDIDDJ_02642 PF00313 'Cold-shock' DNA-binding domain NLHDIDDJ_02644 PF04542 Sigma-70 region 2 NLHDIDDJ_02644 PF04545 Sigma-70, region 4 NLHDIDDJ_02644 PF00140 Sigma-70 factor, region 1.2 NLHDIDDJ_02645 PF04241 Protein of unknown function (DUF423) NLHDIDDJ_02647 PF05690 Thiazole biosynthesis protein ThiG NLHDIDDJ_02649 PF03883 Peroxide stress protein YaaA NLHDIDDJ_02653 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_02654 PF01139 tRNA-splicing ligase RtcB NLHDIDDJ_02657 PF01137 RNA 3'-terminal phosphate cyclase NLHDIDDJ_02657 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain NLHDIDDJ_02658 PF07687 Peptidase dimerisation domain NLHDIDDJ_02658 PF01546 Peptidase family M20/M25/M40 NLHDIDDJ_02660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NLHDIDDJ_02661 PF00800 Prephenate dehydratase NLHDIDDJ_02661 PF01842 ACT domain NLHDIDDJ_02661 PF01817 Chorismate mutase type II NLHDIDDJ_02662 PF00756 Putative esterase NLHDIDDJ_02663 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_02663 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_02663 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_02664 PF00375 Sodium:dicarboxylate symporter family NLHDIDDJ_02665 PF00591 Glycosyl transferase family, a/b domain NLHDIDDJ_02665 PF02885 Glycosyl transferase family, helical bundle domain NLHDIDDJ_02666 PF07023 Protein of unknown function (DUF1315) NLHDIDDJ_02667 PF01513 ATP-NAD kinase NLHDIDDJ_02668 PF00912 Transglycosylase NLHDIDDJ_02668 PF00905 Penicillin binding protein transpeptidase domain NLHDIDDJ_02668 PF14814 Bifunctional transglycosylase second domain NLHDIDDJ_02670 PF00293 NUDIX domain NLHDIDDJ_02672 PF08521 Two-component sensor kinase N-terminal NLHDIDDJ_02672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_02672 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_02673 PF00072 Response regulator receiver domain NLHDIDDJ_02673 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_02675 PF00437 Type II/IV secretion system protein NLHDIDDJ_02675 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NLHDIDDJ_02677 PF18389 TrmO C-terminal domain NLHDIDDJ_02677 PF01980 tRNA-methyltransferase O NLHDIDDJ_02678 PF00970 Oxidoreductase FAD-binding domain NLHDIDDJ_02678 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_02679 PF02567 Phenazine biosynthesis-like protein NLHDIDDJ_02680 PF00155 Aminotransferase class I and II NLHDIDDJ_02680 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_02681 PF01136 Peptidase family U32 NLHDIDDJ_02681 PF16325 Peptidase family U32 C-terminal domain NLHDIDDJ_02682 PF00037 4Fe-4S binding domain NLHDIDDJ_02683 PF00893 Small Multidrug Resistance protein NLHDIDDJ_02684 PF00005 ABC transporter NLHDIDDJ_02685 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02686 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02687 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLHDIDDJ_02688 PF03466 LysR substrate binding domain NLHDIDDJ_02688 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02689 PF13533 Biotin-lipoyl like NLHDIDDJ_02690 PF00873 AcrB/AcrD/AcrF family NLHDIDDJ_02691 PF02321 Outer membrane efflux protein NLHDIDDJ_02692 PF00464 Serine hydroxymethyltransferase NLHDIDDJ_02698 PF00005 ABC transporter NLHDIDDJ_02699 PF01061 ABC-2 type transporter NLHDIDDJ_02700 PF14489 QueF-like protein NLHDIDDJ_02700 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NLHDIDDJ_02702 PF01098 Cell cycle protein NLHDIDDJ_02703 PF13406 Transglycosylase SLT domain NLHDIDDJ_02704 PF03330 Lytic transglycolase NLHDIDDJ_02704 PF05036 Sporulation related domain NLHDIDDJ_02708 PF12833 Helix-turn-helix domain NLHDIDDJ_02710 PF00889 Elongation factor TS NLHDIDDJ_02711 PF00318 Ribosomal protein S2 NLHDIDDJ_02712 PF00557 Metallopeptidase family M24 NLHDIDDJ_02714 PF07690 Major Facilitator Superfamily NLHDIDDJ_02717 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_02717 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLHDIDDJ_02718 PF04055 Radical SAM superfamily NLHDIDDJ_02719 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_02719 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_02719 PF09317 Domain of unknown function (DUF1974) NLHDIDDJ_02722 PF05221 S-adenosyl-L-homocysteine hydrolase NLHDIDDJ_02722 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NLHDIDDJ_02723 PF02219 Methylenetetrahydrofolate reductase NLHDIDDJ_02724 PF04452 RNA methyltransferase NLHDIDDJ_02725 PF00563 EAL domain NLHDIDDJ_02725 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_02725 PF03707 Bacterial signalling protein N terminal repeat NLHDIDDJ_02726 PF03949 Malic enzyme, NAD binding domain NLHDIDDJ_02726 PF01515 Phosphate acetyl/butaryl transferase NLHDIDDJ_02726 PF00390 Malic enzyme, N-terminal domain NLHDIDDJ_02727 PF01743 Poly A polymerase head domain NLHDIDDJ_02727 PF12627 Probable RNA and SrmB- binding site of polymerase A NLHDIDDJ_02728 PF13180 PDZ domain NLHDIDDJ_02729 PF01784 NIF3 (NGG1p interacting factor 3) NLHDIDDJ_02730 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NLHDIDDJ_02730 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NLHDIDDJ_02737 PF01040 UbiA prenyltransferase family NLHDIDDJ_02738 PF04345 Chorismate lyase NLHDIDDJ_02739 PF00120 Glutamine synthetase, catalytic domain NLHDIDDJ_02739 PF03951 Glutamine synthetase, beta-Grasp domain NLHDIDDJ_02740 PF00854 POT family NLHDIDDJ_02742 PF00117 Glutamine amidotransferase class-I NLHDIDDJ_02743 PF11838 ERAP1-like C-terminal domain NLHDIDDJ_02743 PF01433 Peptidase family M1 domain NLHDIDDJ_02744 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_02744 PF00593 TonB dependent receptor NLHDIDDJ_02745 PF00591 Glycosyl transferase family, a/b domain NLHDIDDJ_02745 PF02885 Glycosyl transferase family, helical bundle domain NLHDIDDJ_02746 PF00218 Indole-3-glycerol phosphate synthase NLHDIDDJ_02749 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NLHDIDDJ_02749 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NLHDIDDJ_02750 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_02750 PF01799 [2Fe-2S] binding domain NLHDIDDJ_02751 PF01227 GTP cyclohydrolase I NLHDIDDJ_02752 PF00144 Beta-lactamase NLHDIDDJ_02755 PF05675 Protein of unknown function (DUF817) NLHDIDDJ_02756 PF01208 Uroporphyrinogen decarboxylase (URO-D) NLHDIDDJ_02758 PF00425 chorismate binding enzyme NLHDIDDJ_02760 PF00975 Thioesterase domain NLHDIDDJ_02761 PF00005 ABC transporter NLHDIDDJ_02762 PF00664 ABC transporter transmembrane region NLHDIDDJ_02762 PF00005 ABC transporter NLHDIDDJ_02764 PF00282 Pyridoxal-dependent decarboxylase conserved domain NLHDIDDJ_02765 PF00857 Isochorismatase family NLHDIDDJ_02765 PF00550 Phosphopantetheine attachment site NLHDIDDJ_02766 PF00501 AMP-binding enzyme NLHDIDDJ_02766 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_02767 PF00501 AMP-binding enzyme NLHDIDDJ_02767 PF00668 Condensation domain NLHDIDDJ_02767 PF00550 Phosphopantetheine attachment site NLHDIDDJ_02768 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NLHDIDDJ_02769 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_02769 PF00593 TonB dependent receptor NLHDIDDJ_02770 PF01497 Periplasmic binding protein NLHDIDDJ_02771 PF00005 ABC transporter NLHDIDDJ_02772 PF01032 FecCD transport family NLHDIDDJ_02773 PF01032 FecCD transport family NLHDIDDJ_02775 PF00501 AMP-binding enzyme NLHDIDDJ_02775 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_02775 PF00975 Thioesterase domain NLHDIDDJ_02775 PF00668 Condensation domain NLHDIDDJ_02775 PF00550 Phosphopantetheine attachment site NLHDIDDJ_02776 PF00501 AMP-binding enzyme NLHDIDDJ_02776 PF00550 Phosphopantetheine attachment site NLHDIDDJ_02776 PF00668 Condensation domain NLHDIDDJ_02776 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_02778 PF08348 YheO-like PAS domain NLHDIDDJ_02778 PF13309 HTH domain NLHDIDDJ_02779 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_02780 PF17954 Quercetinase C-terminal cupin domain NLHDIDDJ_02780 PF02678 Pirin NLHDIDDJ_02787 PF04328 Selenoprotein, putative NLHDIDDJ_02788 PF02554 Carbon starvation protein CstA NLHDIDDJ_02788 PF13722 5TM C-terminal transporter carbon starvation CstA NLHDIDDJ_02789 PF01132 Elongation factor P (EF-P) OB domain NLHDIDDJ_02789 PF08207 Elongation factor P (EF-P) KOW-like domain NLHDIDDJ_02789 PF09285 Elongation factor P, C-terminal NLHDIDDJ_02790 PF04055 Radical SAM superfamily NLHDIDDJ_02793 PF01197 Ribosomal protein L31 NLHDIDDJ_02794 PF13593 SBF-like CPA transporter family (DUF4137) NLHDIDDJ_02795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NLHDIDDJ_02796 PF07690 Major Facilitator Superfamily NLHDIDDJ_02797 PF13654 AAA domain NLHDIDDJ_02797 PF05362 Lon protease (S16) C-terminal proteolytic domain NLHDIDDJ_02798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02798 PF03466 LysR substrate binding domain NLHDIDDJ_02799 PF01476 LysM domain NLHDIDDJ_02799 PF01551 Peptidase family M23 NLHDIDDJ_02800 PF01975 Survival protein SurE NLHDIDDJ_02803 PF00768 D-alanyl-D-alanine carboxypeptidase NLHDIDDJ_02803 PF07943 Penicillin-binding protein 5, C-terminal domain NLHDIDDJ_02804 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_02805 PF00293 NUDIX domain NLHDIDDJ_02805 PF13344 Haloacid dehalogenase-like hydrolase NLHDIDDJ_02807 PF04356 Protein of unknown function (DUF489) NLHDIDDJ_02808 PF08328 Adenylosuccinate lyase C-terminal NLHDIDDJ_02808 PF00206 Lyase NLHDIDDJ_02811 PF01343 Peptidase family S49 NLHDIDDJ_02811 PF08496 Peptidase family S49 N-terminal NLHDIDDJ_02812 PF00005 ABC transporter NLHDIDDJ_02813 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02814 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02815 PF12849 PBP superfamily domain NLHDIDDJ_02816 PF00324 Amino acid permease NLHDIDDJ_02817 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NLHDIDDJ_02817 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NLHDIDDJ_02817 PF00205 Thiamine pyrophosphate enzyme, central domain NLHDIDDJ_02818 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_02819 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_02820 PF00282 Pyridoxal-dependent decarboxylase conserved domain NLHDIDDJ_02821 PF00202 Aminotransferase class-III NLHDIDDJ_02824 PF02525 Flavodoxin-like fold NLHDIDDJ_02825 PF00487 Fatty acid desaturase NLHDIDDJ_02826 PF00970 Oxidoreductase FAD-binding domain NLHDIDDJ_02826 PF00111 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_02826 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_02827 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_02829 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_02829 PF18337 RapA N-terminal Tudor like domain NLHDIDDJ_02829 PF18339 RapA N-terminal Tudor like domain 1 NLHDIDDJ_02829 PF00176 SNF2 family N-terminal domain NLHDIDDJ_02829 PF12137 RNA polymerase recycling family C-terminal NLHDIDDJ_02830 PF00849 RNA pseudouridylate synthase NLHDIDDJ_02832 PF00202 Aminotransferase class-III NLHDIDDJ_02833 PF02581 Thiamine monophosphate synthase NLHDIDDJ_02838 PF05193 Peptidase M16 inactive domain NLHDIDDJ_02838 PF00675 Insulinase (Peptidase family M16) NLHDIDDJ_02839 PF02567 Phenazine biosynthesis-like protein NLHDIDDJ_02840 PF00375 Sodium:dicarboxylate symporter family NLHDIDDJ_02841 PF03466 LysR substrate binding domain NLHDIDDJ_02841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02842 PF06779 Uncharacterised MFS-type transporter YbfB NLHDIDDJ_02845 PF00180 Isocitrate/isopropylmalate dehydrogenase NLHDIDDJ_02846 PF13356 Arm DNA-binding domain NLHDIDDJ_02846 PF00589 Phage integrase family NLHDIDDJ_02881 PF03796 DnaB-like helicase C terminal domain NLHDIDDJ_02881 PF00772 DnaB-like helicase N terminal domain NLHDIDDJ_02898 PF00849 RNA pseudouridylate synthase NLHDIDDJ_02899 PF03971 Monomeric isocitrate dehydrogenase NLHDIDDJ_02901 PF00768 D-alanyl-D-alanine carboxypeptidase NLHDIDDJ_02901 PF07943 Penicillin-binding protein 5, C-terminal domain NLHDIDDJ_02902 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_02903 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NLHDIDDJ_02904 PF00875 DNA photolyase NLHDIDDJ_02904 PF03441 FAD binding domain of DNA photolyase NLHDIDDJ_02910 PF02350 UDP-N-acetylglucosamine 2-epimerase NLHDIDDJ_02913 PF03060 Nitronate monooxygenase NLHDIDDJ_02914 PF01207 Dihydrouridine synthase (Dus) NLHDIDDJ_02915 PF07759 Protein of unknown function (DUF1615) NLHDIDDJ_02917 PF01472 PUA domain NLHDIDDJ_02917 PF00696 Amino acid kinase family NLHDIDDJ_02918 PF01018 GTP1/OBG NLHDIDDJ_02918 PF01926 50S ribosome-binding GTPase NLHDIDDJ_02921 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NLHDIDDJ_02921 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NLHDIDDJ_02922 PF00892 EamA-like transporter family NLHDIDDJ_02924 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_02924 PF04851 Type III restriction enzyme, res subunit NLHDIDDJ_02924 PF02151 UvrB/uvrC motif NLHDIDDJ_02924 PF12344 Ultra-violet resistance protein B NLHDIDDJ_02924 PF17757 UvrB interaction domain NLHDIDDJ_02926 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_02926 PF17151 Periplasmic sensor domain NLHDIDDJ_02928 PF00155 Aminotransferase class I and II NLHDIDDJ_02930 PF00012 Hsp70 protein NLHDIDDJ_02935 PF00106 short chain dehydrogenase NLHDIDDJ_02936 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NLHDIDDJ_02937 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NLHDIDDJ_02938 PF02565 Recombination protein O C terminal NLHDIDDJ_02938 PF11967 Recombination protein O N terminal NLHDIDDJ_02940 PF07650 KH domain NLHDIDDJ_02940 PF01926 50S ribosome-binding GTPase NLHDIDDJ_02941 PF00035 Double-stranded RNA binding motif NLHDIDDJ_02941 PF14622 Ribonuclease-III-like NLHDIDDJ_02943 PF10502 Signal peptidase, peptidase S26 NLHDIDDJ_02944 PF00009 Elongation factor Tu GTP binding domain NLHDIDDJ_02944 PF03144 Elongation factor Tu domain 2 NLHDIDDJ_02944 PF06421 GTP-binding protein LepA C-terminus NLHDIDDJ_02944 PF00679 Elongation factor G C-terminus NLHDIDDJ_02945 PF13302 Acetyltransferase (GNAT) domain NLHDIDDJ_02947 PF13180 PDZ domain NLHDIDDJ_02948 PF00890 FAD binding domain NLHDIDDJ_02948 PF02910 Fumarate reductase flavoprotein C-term NLHDIDDJ_02950 PF02223 Thymidylate kinase NLHDIDDJ_02951 PF02618 YceG-like family NLHDIDDJ_02952 PF01063 Amino-transferase class IV NLHDIDDJ_02955 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02956 PF00528 Binding-protein-dependent transport system inner membrane component NLHDIDDJ_02957 PF12857 TOBE-like domain NLHDIDDJ_02957 PF00005 ABC transporter NLHDIDDJ_02958 PF03466 LysR substrate binding domain NLHDIDDJ_02958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_02960 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_02960 PF14602 Hexapeptide repeat of succinyl-transferase NLHDIDDJ_02960 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NLHDIDDJ_02962 PF06508 Queuosine biosynthesis protein QueC NLHDIDDJ_02965 PF00578 AhpC/TSA family NLHDIDDJ_02967 PF01467 Cytidylyltransferase-like NLHDIDDJ_02967 PF00293 NUDIX domain NLHDIDDJ_02968 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_02969 PF01784 NIF3 (NGG1p interacting factor 3) NLHDIDDJ_02970 PF07690 Major Facilitator Superfamily NLHDIDDJ_02971 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NLHDIDDJ_02971 PF02769 AIR synthase related protein, C-terminal domain NLHDIDDJ_02971 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NLHDIDDJ_02972 PF01966 HD domain NLHDIDDJ_02973 PF07499 RuvA, C-terminal domain NLHDIDDJ_02973 PF01330 RuvA N terminal domain NLHDIDDJ_02974 PF17864 RuvB AAA lid domain NLHDIDDJ_02974 PF05491 RuvB C-terminal winged helix domain NLHDIDDJ_02974 PF05496 Holliday junction DNA helicase RuvB P-loop domain NLHDIDDJ_02975 PF07687 Peptidase dimerisation domain NLHDIDDJ_02975 PF01546 Peptidase family M20/M25/M40 NLHDIDDJ_02976 PF03061 Thioesterase superfamily NLHDIDDJ_02977 PF01618 MotA/TolQ/ExbB proton channel family NLHDIDDJ_02978 PF02472 Biopolymer transport protein ExbD/TolR NLHDIDDJ_02980 PF07676 WD40-like Beta Propeller Repeat NLHDIDDJ_02980 PF04052 TolB amino-terminal domain NLHDIDDJ_02981 PF00691 OmpA family NLHDIDDJ_02983 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NLHDIDDJ_02984 PF00588 SpoU rRNA Methylase family NLHDIDDJ_02984 PF08032 RNA 2'-O ribose methyltransferase substrate binding NLHDIDDJ_02990 PF00308 Bacterial dnaA protein NLHDIDDJ_02990 PF08299 Bacterial dnaA protein helix-turn-helix NLHDIDDJ_02990 PF11638 DnaA N-terminal domain NLHDIDDJ_02991 PF01594 AI-2E family transporter NLHDIDDJ_02992 PF00586 AIR synthase related protein, N-terminal domain NLHDIDDJ_02992 PF02769 AIR synthase related protein, C-terminal domain NLHDIDDJ_02993 PF00551 Formyl transferase NLHDIDDJ_02994 PF12697 Alpha/beta hydrolase family NLHDIDDJ_02995 PF06965 Na+/H+ antiporter 1 NLHDIDDJ_02995 PF01343 Peptidase family S49 NLHDIDDJ_02997 PF13567 Domain of unknown function (DUF4131) NLHDIDDJ_02997 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_02997 PF03772 Competence protein NLHDIDDJ_02998 PF00005 ABC transporter NLHDIDDJ_02999 PF02687 FtsX-like permease family NLHDIDDJ_02999 PF12704 MacB-like periplasmic core domain NLHDIDDJ_03001 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NLHDIDDJ_03004 PF00266 Aminotransferase class-V NLHDIDDJ_03006 PF13533 Biotin-lipoyl like NLHDIDDJ_03010 PF00535 Glycosyl transferase family 2 NLHDIDDJ_03013 PF00521 DNA gyrase/topoisomerase IV, subunit A NLHDIDDJ_03013 PF03989 DNA gyrase C-terminal domain, beta-propeller NLHDIDDJ_03014 PF00766 Electron transfer flavoprotein FAD-binding domain NLHDIDDJ_03014 PF01012 Electron transfer flavoprotein domain NLHDIDDJ_03015 PF01012 Electron transfer flavoprotein domain NLHDIDDJ_03016 PF02899 Phage integrase, N-terminal SAM-like domain NLHDIDDJ_03016 PF00589 Phage integrase family NLHDIDDJ_03017 PF01810 LysE type translocator NLHDIDDJ_03018 PF00561 alpha/beta hydrolase fold NLHDIDDJ_03019 PF03747 ADP-ribosylglycohydrolase NLHDIDDJ_03020 PF01678 Diaminopimelate epimerase NLHDIDDJ_03021 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NLHDIDDJ_03021 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NLHDIDDJ_03023 PF00324 Amino acid permease NLHDIDDJ_03024 PF18073 Rubredoxin metal binding domain NLHDIDDJ_03026 PF00152 tRNA synthetases class II (D, K and N) NLHDIDDJ_03027 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NLHDIDDJ_03027 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NLHDIDDJ_03027 PF11890 Domain of unknown function (DUF3410) NLHDIDDJ_03028 PF06803 Protein of unknown function (DUF1232) NLHDIDDJ_03029 PF02634 FdhD/NarQ family NLHDIDDJ_03030 PF00384 Molybdopterin oxidoreductase NLHDIDDJ_03031 PF02595 Glycerate kinase family NLHDIDDJ_03034 PF00881 Nitroreductase family NLHDIDDJ_03040 PF00975 Thioesterase domain NLHDIDDJ_03040 PF00501 AMP-binding enzyme NLHDIDDJ_03040 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_03040 PF00668 Condensation domain NLHDIDDJ_03040 PF00550 Phosphopantetheine attachment site NLHDIDDJ_03043 PF01272 Transcription elongation factor, GreA/GreB, C-term NLHDIDDJ_03043 PF03449 Transcription elongation factor, N-terminal NLHDIDDJ_03044 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLHDIDDJ_03044 PF01464 Transglycosylase SLT domain NLHDIDDJ_03046 PF01171 PP-loop family NLHDIDDJ_03047 PF01464 Transglycosylase SLT domain NLHDIDDJ_03048 PF01435 Peptidase family M48 NLHDIDDJ_03050 PF00873 AcrB/AcrD/AcrF family NLHDIDDJ_03051 PF03009 Glycerophosphoryl diester phosphodiesterase family NLHDIDDJ_03053 PF01219 Prokaryotic diacylglycerol kinase NLHDIDDJ_03054 PF00118 TCP-1/cpn60 chaperonin family NLHDIDDJ_03055 PF00166 Chaperonin 10 Kd subunit NLHDIDDJ_03056 PF00149 Calcineurin-like phosphoesterase NLHDIDDJ_03057 PF00781 Diacylglycerol kinase catalytic domain NLHDIDDJ_03058 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NLHDIDDJ_03058 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NLHDIDDJ_03059 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NLHDIDDJ_03059 PF01266 FAD dependent oxidoreductase NLHDIDDJ_03060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NLHDIDDJ_03060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NLHDIDDJ_03061 PF00083 Sugar (and other) transporter NLHDIDDJ_03064 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NLHDIDDJ_03064 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NLHDIDDJ_03067 PF09423 PhoD-like phosphatase NLHDIDDJ_03067 PF16655 PhoD-like phosphatase, N-terminal domain NLHDIDDJ_03071 PF00809 Pterin binding enzyme NLHDIDDJ_03072 PF01434 Peptidase family M41 NLHDIDDJ_03072 PF06480 FtsH Extracellular NLHDIDDJ_03072 PF00004 ATPase family associated with various cellular activities (AAA) NLHDIDDJ_03072 PF17862 AAA+ lid domain NLHDIDDJ_03073 PF01728 FtsJ-like methyltransferase NLHDIDDJ_03074 PF01985 CRS1 / YhbY (CRM) domain NLHDIDDJ_03077 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NLHDIDDJ_03077 PF00117 Glutamine amidotransferase class-I NLHDIDDJ_03078 PF02142 MGS-like domain NLHDIDDJ_03078 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NLHDIDDJ_03078 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NLHDIDDJ_03079 PF01272 Transcription elongation factor, GreA/GreB, C-term NLHDIDDJ_03079 PF03449 Transcription elongation factor, N-terminal NLHDIDDJ_03080 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_03081 PF00582 Universal stress protein family NLHDIDDJ_03082 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NLHDIDDJ_03084 PF09587 Bacterial capsule synthesis protein PGA_cap NLHDIDDJ_03087 PF00999 Sodium/hydrogen exchanger family NLHDIDDJ_03088 PF04228 Putative neutral zinc metallopeptidase NLHDIDDJ_03089 PF05661 Protein of unknown function (DUF808) NLHDIDDJ_03090 PF00579 tRNA synthetases class I (W and Y) NLHDIDDJ_03091 PF02629 CoA binding domain NLHDIDDJ_03091 PF00549 CoA-ligase NLHDIDDJ_03092 PF08442 ATP-grasp domain NLHDIDDJ_03092 PF00549 CoA-ligase NLHDIDDJ_03093 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_03093 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLHDIDDJ_03094 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NLHDIDDJ_03094 PF00364 Biotin-requiring enzyme NLHDIDDJ_03094 PF02817 e3 binding domain NLHDIDDJ_03095 PF16078 2-oxoglutarate dehydrogenase N-terminus NLHDIDDJ_03095 PF00676 Dehydrogenase E1 component NLHDIDDJ_03095 PF16870 2-oxoglutarate dehydrogenase C-terminal NLHDIDDJ_03095 PF02779 Transketolase, pyrimidine binding domain NLHDIDDJ_03096 PF13085 2Fe-2S iron-sulfur cluster binding domain NLHDIDDJ_03097 PF02910 Fumarate reductase flavoprotein C-term NLHDIDDJ_03097 PF00890 FAD binding domain NLHDIDDJ_03098 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NLHDIDDJ_03099 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NLHDIDDJ_03100 PF00285 Citrate synthase, C-terminal domain NLHDIDDJ_03102 PF00581 Rhodanese-like domain NLHDIDDJ_03102 PF17773 UPF0176 acylphosphatase like domain NLHDIDDJ_03106 PF04545 Sigma-70, region 4 NLHDIDDJ_03106 PF04539 Sigma-70 region 3 NLHDIDDJ_03106 PF04542 Sigma-70 region 2 NLHDIDDJ_03106 PF03979 Sigma-70 factor, region 1.1 NLHDIDDJ_03106 PF00140 Sigma-70 factor, region 1.2 NLHDIDDJ_03106 PF04546 Sigma-70, non-essential region NLHDIDDJ_03107 PF04359 Protein of unknown function (DUF493) NLHDIDDJ_03108 PF03099 Biotin/lipoate A/B protein ligase family NLHDIDDJ_03110 PF00465 Iron-containing alcohol dehydrogenase NLHDIDDJ_03111 PF13520 Amino acid permease NLHDIDDJ_03112 PF03358 NADPH-dependent FMN reductase NLHDIDDJ_03113 PF01638 HxlR-like helix-turn-helix NLHDIDDJ_03114 PF00588 SpoU rRNA Methylase family NLHDIDDJ_03115 PF10414 Sirohaem synthase dimerisation region NLHDIDDJ_03115 PF14824 Sirohaem biosynthesis protein central NLHDIDDJ_03115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NLHDIDDJ_03116 PF02403 Seryl-tRNA synthetase N-terminal domain NLHDIDDJ_03116 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NLHDIDDJ_03118 PF03548 Outer membrane lipoprotein carrier protein LolA NLHDIDDJ_03119 PF01016 Ribosomal L27 protein NLHDIDDJ_03120 PF00829 Ribosomal prokaryotic L21 protein NLHDIDDJ_03121 PF00348 Polyprenyl synthetase NLHDIDDJ_03123 PF01569 PAP2 superfamily NLHDIDDJ_03124 PF00529 HlyD membrane-fusion protein of T1SS NLHDIDDJ_03124 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_03125 PF00873 AcrB/AcrD/AcrF family NLHDIDDJ_03126 PF02321 Outer membrane efflux protein NLHDIDDJ_03127 PF01906 Putative heavy-metal-binding NLHDIDDJ_03128 PF01906 Putative heavy-metal-binding NLHDIDDJ_03132 PF08264 Anticodon-binding domain of tRNA NLHDIDDJ_03132 PF00133 tRNA synthetases class I (I, L, M and V) NLHDIDDJ_03132 PF10458 Valyl tRNA synthetase tRNA binding arm NLHDIDDJ_03136 PF03466 LysR substrate binding domain NLHDIDDJ_03136 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_03137 PF00909 Ammonium Transporter Family NLHDIDDJ_03139 PF08521 Two-component sensor kinase N-terminal NLHDIDDJ_03139 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_03139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_03140 PF00072 Response regulator receiver domain NLHDIDDJ_03140 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_03141 PF08019 Phosphoethanolamine transferase EptA/EptB NLHDIDDJ_03141 PF00884 Sulfatase NLHDIDDJ_03145 PF01734 Patatin-like phospholipase NLHDIDDJ_03147 PF01145 SPFH domain / Band 7 family NLHDIDDJ_03148 PF04237 YjbR NLHDIDDJ_03149 PF00348 Polyprenyl synthetase NLHDIDDJ_03150 PF04303 PrpF protein NLHDIDDJ_03151 PF00324 Amino acid permease NLHDIDDJ_03153 PF01965 DJ-1/PfpI family NLHDIDDJ_03154 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_03154 PF00698 Acyl transferase domain NLHDIDDJ_03154 PF00550 Phosphopantetheine attachment site NLHDIDDJ_03154 PF14765 Polyketide synthase dehydratase NLHDIDDJ_03154 PF08990 Erythronolide synthase docking NLHDIDDJ_03154 PF02801 Beta-ketoacyl synthase, C-terminal domain NLHDIDDJ_03154 PF08659 KR domain NLHDIDDJ_03154 PF00109 Beta-ketoacyl synthase, N-terminal domain NLHDIDDJ_03154 PF09277 Erythronolide synthase, docking NLHDIDDJ_03154 PF16197 Ketoacyl-synthetase C-terminal extension NLHDIDDJ_03155 PF12833 Helix-turn-helix domain NLHDIDDJ_03155 PF06719 AraC-type transcriptional regulator N-terminus NLHDIDDJ_03156 PF02673 Bacitracin resistance protein BacA NLHDIDDJ_03160 PF02525 Flavodoxin-like fold NLHDIDDJ_03163 PF01507 Phosphoadenosine phosphosulfate reductase family NLHDIDDJ_03164 PF06974 Protein of unknown function (DUF1298) NLHDIDDJ_03164 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NLHDIDDJ_03166 PF10150 Ribonuclease E/G family NLHDIDDJ_03166 PF00575 S1 RNA binding domain NLHDIDDJ_03167 PF02545 Maf-like protein NLHDIDDJ_03168 PF04093 rod shape-determining protein MreD NLHDIDDJ_03169 PF04085 rod shape-determining protein MreC NLHDIDDJ_03171 PF02686 Glu-tRNAGln amidotransferase C subunit NLHDIDDJ_03172 PF01425 Amidase NLHDIDDJ_03173 PF02637 GatB domain NLHDIDDJ_03173 PF02934 GatB/GatE catalytic domain NLHDIDDJ_03178 PF01431 Peptidase family M13 NLHDIDDJ_03178 PF05649 Peptidase family M13 NLHDIDDJ_03179 PF05992 SbmA/BacA-like family NLHDIDDJ_03180 PF13291 ACT domain NLHDIDDJ_03180 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_03181 PF01734 Patatin-like phospholipase NLHDIDDJ_03182 PF01235 Sodium:alanine symporter family NLHDIDDJ_03184 PF00881 Nitroreductase family NLHDIDDJ_03185 PF07690 Major Facilitator Superfamily NLHDIDDJ_03186 PF12805 FUSC-like inner membrane protein yccS NLHDIDDJ_03188 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_03188 PF00258 Flavodoxin NLHDIDDJ_03188 PF00667 FAD binding domain NLHDIDDJ_03196 PF03734 L,D-transpeptidase catalytic domain NLHDIDDJ_03196 PF17969 L,D-transpeptidase C-terminal domain NLHDIDDJ_03197 PF04304 Protein of unknown function (DUF454) NLHDIDDJ_03199 PF08085 Entericidin EcnA/B family NLHDIDDJ_03200 PF07687 Peptidase dimerisation domain NLHDIDDJ_03200 PF01546 Peptidase family M20/M25/M40 NLHDIDDJ_03202 PF01584 CheW-like domain NLHDIDDJ_03202 PF00072 Response regulator receiver domain NLHDIDDJ_03202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_03202 PF01627 Hpt domain NLHDIDDJ_03203 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NLHDIDDJ_03203 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NLHDIDDJ_03204 PF01584 CheW-like domain NLHDIDDJ_03205 PF00072 Response regulator receiver domain NLHDIDDJ_03206 PF00072 Response regulator receiver domain NLHDIDDJ_03209 PF00873 AcrB/AcrD/AcrF family NLHDIDDJ_03210 PF03129 Anticodon binding domain NLHDIDDJ_03210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NLHDIDDJ_03210 PF04073 Aminoacyl-tRNA editing domain NLHDIDDJ_03211 PF07411 Domain of unknown function (DUF1508) NLHDIDDJ_03212 PF08274 PhnA Zinc-Ribbon NLHDIDDJ_03212 PF03831 PhnA domain NLHDIDDJ_03213 PF04343 Protein of unknown function, DUF488 NLHDIDDJ_03215 PF01571 Aminomethyltransferase folate-binding domain NLHDIDDJ_03216 PF13098 Thioredoxin-like domain NLHDIDDJ_03216 PF10411 Disulfide bond isomerase protein N-terminus NLHDIDDJ_03218 PF03547 Membrane transport protein NLHDIDDJ_03219 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NLHDIDDJ_03220 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_03220 PF00593 TonB dependent receptor NLHDIDDJ_03221 PF02245 Methylpurine-DNA glycosylase (MPG) NLHDIDDJ_03222 PF06827 Zinc finger found in FPG and IleRS NLHDIDDJ_03222 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NLHDIDDJ_03222 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NLHDIDDJ_03225 PF01741 Large-conductance mechanosensitive channel, MscL NLHDIDDJ_03226 PF00009 Elongation factor Tu GTP binding domain NLHDIDDJ_03226 PF03144 Elongation factor Tu domain 2 NLHDIDDJ_03226 PF00679 Elongation factor G C-terminus NLHDIDDJ_03227 PF00860 Permease family NLHDIDDJ_03228 PF05175 Methyltransferase small domain NLHDIDDJ_03228 PF08468 Methyltransferase small domain N-terminal NLHDIDDJ_03229 PF00324 Amino acid permease NLHDIDDJ_03230 PF01139 tRNA-splicing ligase RtcB NLHDIDDJ_03232 PF13505 Outer membrane protein beta-barrel domain NLHDIDDJ_03232 PF00691 OmpA family NLHDIDDJ_03234 PF00108 Thiolase, N-terminal domain NLHDIDDJ_03234 PF02803 Thiolase, C-terminal domain NLHDIDDJ_03236 PF00893 Small Multidrug Resistance protein NLHDIDDJ_03238 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NLHDIDDJ_03238 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NLHDIDDJ_03239 PF01011 PQQ enzyme repeat NLHDIDDJ_03240 PF04966 Carbohydrate-selective porin, OprB family NLHDIDDJ_03241 PF02515 CoA-transferase family III NLHDIDDJ_03242 PF12833 Helix-turn-helix domain NLHDIDDJ_03242 PF02311 AraC-like ligand binding domain NLHDIDDJ_03243 PF00108 Thiolase, N-terminal domain NLHDIDDJ_03243 PF02803 Thiolase, C-terminal domain NLHDIDDJ_03244 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_03244 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_03244 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NLHDIDDJ_03247 PF13673 Acetyltransferase (GNAT) domain NLHDIDDJ_03249 PF03006 Haemolysin-III related NLHDIDDJ_03250 PF07690 Major Facilitator Superfamily NLHDIDDJ_03250 PF00083 Sugar (and other) transporter NLHDIDDJ_03252 PF07516 SecA Wing and Scaffold domain NLHDIDDJ_03252 PF01043 SecA preprotein cross-linking domain NLHDIDDJ_03252 PF07517 SecA DEAD-like domain NLHDIDDJ_03252 PF02810 SEC-C motif NLHDIDDJ_03253 PF10417 C-terminal domain of 1-Cys peroxiredoxin NLHDIDDJ_03253 PF00578 AhpC/TSA family NLHDIDDJ_03254 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_03257 PF02875 Mur ligase family, glutamate ligase domain NLHDIDDJ_03257 PF08245 Mur ligase middle domain NLHDIDDJ_03258 PF01039 Carboxyl transferase domain NLHDIDDJ_03259 PF00290 Tryptophan synthase alpha chain NLHDIDDJ_03264 PF00291 Pyridoxal-phosphate dependent enzyme NLHDIDDJ_03265 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NLHDIDDJ_03266 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_03266 PF00593 TonB dependent receptor NLHDIDDJ_03267 PF01923 Cobalamin adenosyltransferase NLHDIDDJ_03268 PF03009 Glycerophosphoryl diester phosphodiesterase family NLHDIDDJ_03271 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NLHDIDDJ_03272 PF00072 Response regulator receiver domain NLHDIDDJ_03272 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_03273 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_03273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_03273 PF00672 HAMP domain NLHDIDDJ_03275 PF12806 Acetyl-CoA dehydrogenase C-terminal like NLHDIDDJ_03275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_03275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_03275 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_03276 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_03276 PF12806 Acetyl-CoA dehydrogenase C-terminal like NLHDIDDJ_03276 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_03276 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_03277 PF06146 Phosphate-starvation-inducible E NLHDIDDJ_03281 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_03281 PF00593 TonB dependent receptor NLHDIDDJ_03283 PF01336 OB-fold nucleic acid binding domain NLHDIDDJ_03283 PF02938 GAD domain NLHDIDDJ_03283 PF00152 tRNA synthetases class II (D, K and N) NLHDIDDJ_03286 PF02350 UDP-N-acetylglucosamine 2-epimerase NLHDIDDJ_03289 PF00534 Glycosyl transferases group 1 NLHDIDDJ_03289 PF13439 Glycosyltransferase Family 4 NLHDIDDJ_03290 PF00535 Glycosyl transferase family 2 NLHDIDDJ_03291 PF01522 Polysaccharide deacetylase NLHDIDDJ_03294 PF01063 Amino-transferase class IV NLHDIDDJ_03295 PF03710 Glutamate-ammonia ligase adenylyltransferase NLHDIDDJ_03295 PF08335 GlnD PII-uridylyltransferase NLHDIDDJ_03296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_03296 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_03296 PF07689 KaiB domain NLHDIDDJ_03298 PF02547 Queuosine biosynthesis protein NLHDIDDJ_03301 PF01702 Queuine tRNA-ribosyltransferase NLHDIDDJ_03302 PF02699 Preprotein translocase subunit NLHDIDDJ_03303 PF07549 SecD/SecF GG Motif NLHDIDDJ_03303 PF13721 SecD export protein N-terminal TM region NLHDIDDJ_03303 PF02355 Protein export membrane protein NLHDIDDJ_03304 PF07549 SecD/SecF GG Motif NLHDIDDJ_03304 PF02355 Protein export membrane protein NLHDIDDJ_03305 PF04127 DNA / pantothenate metabolism flavoprotein NLHDIDDJ_03305 PF02441 Flavoprotein NLHDIDDJ_03306 PF04002 RadC-like JAB domain NLHDIDDJ_03307 PF01062 Bestrophin, RFP-TM, chloride channel NLHDIDDJ_03308 PF02811 PHP domain NLHDIDDJ_03309 PF04279 Intracellular septation protein A NLHDIDDJ_03310 PF03795 YCII-related domain NLHDIDDJ_03312 PF01266 FAD dependent oxidoreductase NLHDIDDJ_03312 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NLHDIDDJ_03314 PF04461 Protein of unknown function (DUF520) NLHDIDDJ_03316 PF03061 Thioesterase superfamily NLHDIDDJ_03317 PF00085 Thioredoxin NLHDIDDJ_03318 PF00561 alpha/beta hydrolase fold NLHDIDDJ_03319 PF00753 Metallo-beta-lactamase superfamily NLHDIDDJ_03319 PF04273 Putative phosphatase (DUF442) NLHDIDDJ_03321 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_03321 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLHDIDDJ_03328 PF17152 Periplasmic sensor domain NLHDIDDJ_03328 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_03329 PF01389 OmpA-like transmembrane domain NLHDIDDJ_03329 PF00691 OmpA family NLHDIDDJ_03330 PF00149 Calcineurin-like phosphoesterase NLHDIDDJ_03330 PF10518 TAT (twin-arginine translocation) pathway signal sequence NLHDIDDJ_03331 PF13091 PLD-like domain NLHDIDDJ_03333 PF16360 GTP-binding GTPase Middle Region NLHDIDDJ_03333 PF13167 GTP-binding GTPase N-terminal NLHDIDDJ_03333 PF01926 50S ribosome-binding GTPase NLHDIDDJ_03337 PF00149 Calcineurin-like phosphoesterase NLHDIDDJ_03338 PF00398 Ribosomal RNA adenine dimethylase NLHDIDDJ_03339 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NLHDIDDJ_03340 PF00572 Ribosomal protein L13 NLHDIDDJ_03341 PF00380 Ribosomal protein S9/S16 NLHDIDDJ_03342 PF00043 Glutathione S-transferase, C-terminal domain NLHDIDDJ_03342 PF13417 Glutathione S-transferase, N-terminal domain NLHDIDDJ_03343 PF04386 Stringent starvation protein B NLHDIDDJ_03345 PF00364 Biotin-requiring enzyme NLHDIDDJ_03345 PF02785 Biotin carboxylase C-terminal domain NLHDIDDJ_03345 PF00289 Biotin carboxylase, N-terminal domain NLHDIDDJ_03345 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NLHDIDDJ_03346 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_03346 PF00378 Enoyl-CoA hydratase/isomerase NLHDIDDJ_03346 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NLHDIDDJ_03347 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_03347 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_03347 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_03348 PF01039 Carboxyl transferase domain NLHDIDDJ_03351 PF17932 Tetracyclin repressor-like, C-terminal domain NLHDIDDJ_03351 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_03352 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_03352 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_03352 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_03361 PF01066 CDP-alcohol phosphatidyltransferase NLHDIDDJ_03362 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NLHDIDDJ_03366 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NLHDIDDJ_03366 PF00056 lactate/malate dehydrogenase, NAD binding domain NLHDIDDJ_03368 PF01464 Transglycosylase SLT domain NLHDIDDJ_03368 PF10145 Phage-related minor tail protein NLHDIDDJ_03368 PF01551 Peptidase family M23 NLHDIDDJ_03369 PF04055 Radical SAM superfamily NLHDIDDJ_03369 PF00919 Uncharacterized protein family UPF0004 NLHDIDDJ_03369 PF01938 TRAM domain NLHDIDDJ_03370 PF02562 PhoH-like protein NLHDIDDJ_03371 PF02130 Uncharacterized protein family UPF0054 NLHDIDDJ_03376 PF03358 NADPH-dependent FMN reductase NLHDIDDJ_03377 PF03631 Virulence factor BrkB NLHDIDDJ_03378 PF00892 EamA-like transporter family NLHDIDDJ_03379 PF12833 Helix-turn-helix domain NLHDIDDJ_03380 PF01557 Fumarylacetoacetate (FAA) hydrolase family NLHDIDDJ_03389 PF17876 Cold shock domain NLHDIDDJ_03389 PF08461 Ribonuclease R winged-helix domain NLHDIDDJ_03389 PF08206 Ribonuclease B OB domain NLHDIDDJ_03389 PF00773 RNB domain NLHDIDDJ_03389 PF00575 S1 RNA binding domain NLHDIDDJ_03390 PF01432 Peptidase family M3 NLHDIDDJ_03391 PF09526 Probable metal-binding protein (DUF2387) NLHDIDDJ_03398 PF03937 Flavinator of succinate dehydrogenase NLHDIDDJ_03399 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_03399 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_03399 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_03400 PF00743 Flavin-binding monooxygenase-like NLHDIDDJ_03401 PF01196 Ribosomal protein L17 NLHDIDDJ_03402 PF01000 RNA polymerase Rpb3/RpoA insert domain NLHDIDDJ_03402 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NLHDIDDJ_03402 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NLHDIDDJ_03403 PF00163 Ribosomal protein S4/S9 N-terminal domain NLHDIDDJ_03403 PF01479 S4 domain NLHDIDDJ_03404 PF00411 Ribosomal protein S11 NLHDIDDJ_03405 PF00416 Ribosomal protein S13/S18 NLHDIDDJ_03406 PF00444 Ribosomal protein L36 NLHDIDDJ_03407 PF00344 SecY translocase NLHDIDDJ_03408 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NLHDIDDJ_03409 PF00327 Ribosomal protein L30p/L7e NLHDIDDJ_03410 PF03719 Ribosomal protein S5, C-terminal domain NLHDIDDJ_03410 PF00333 Ribosomal protein S5, N-terminal domain NLHDIDDJ_03411 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NLHDIDDJ_03412 PF00347 Ribosomal protein L6 NLHDIDDJ_03413 PF00410 Ribosomal protein S8 NLHDIDDJ_03414 PF00253 Ribosomal protein S14p/S29e NLHDIDDJ_03415 PF00281 Ribosomal protein L5 NLHDIDDJ_03415 PF00673 ribosomal L5P family C-terminus NLHDIDDJ_03416 PF00467 KOW motif NLHDIDDJ_03416 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NLHDIDDJ_03417 PF00238 Ribosomal protein L14p/L23e NLHDIDDJ_03418 PF00366 Ribosomal protein S17 NLHDIDDJ_03419 PF00831 Ribosomal L29 protein NLHDIDDJ_03420 PF00252 Ribosomal protein L16p/L10e NLHDIDDJ_03421 PF07650 KH domain NLHDIDDJ_03421 PF00189 Ribosomal protein S3, C-terminal domain NLHDIDDJ_03422 PF00237 Ribosomal protein L22p/L17e NLHDIDDJ_03423 PF00203 Ribosomal protein S19 NLHDIDDJ_03424 PF00181 Ribosomal Proteins L2, RNA binding domain NLHDIDDJ_03424 PF03947 Ribosomal Proteins L2, C-terminal domain NLHDIDDJ_03425 PF00276 Ribosomal protein L23 NLHDIDDJ_03426 PF00573 Ribosomal protein L4/L1 family NLHDIDDJ_03427 PF00297 Ribosomal protein L3 NLHDIDDJ_03428 PF00338 Ribosomal protein S10p/S20e NLHDIDDJ_03429 PF00117 Glutamine amidotransferase class-I NLHDIDDJ_03430 PF01053 Cys/Met metabolism PLP-dependent enzyme NLHDIDDJ_03431 PF05872 Bacterial protein of unknown function (DUF853) NLHDIDDJ_03432 PF00970 Oxidoreductase FAD-binding domain NLHDIDDJ_03432 PF00042 Globin NLHDIDDJ_03432 PF00175 Oxidoreductase NAD-binding domain NLHDIDDJ_03433 PF02082 Transcriptional regulator NLHDIDDJ_03434 PF01926 50S ribosome-binding GTPase NLHDIDDJ_03436 PF00375 Sodium:dicarboxylate symporter family NLHDIDDJ_03438 PF01553 Acyltransferase NLHDIDDJ_03441 PF17191 RecG wedge domain NLHDIDDJ_03441 PF00270 DEAD/DEAH box helicase NLHDIDDJ_03441 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_03442 PF00156 Phosphoribosyl transferase domain NLHDIDDJ_03443 PF00293 NUDIX domain NLHDIDDJ_03444 PF03641 Possible lysine decarboxylase NLHDIDDJ_03445 PF01544 CorA-like Mg2+ transporter protein NLHDIDDJ_03447 PF05494 MlaC protein NLHDIDDJ_03449 PF02405 Permease MlaE NLHDIDDJ_03450 PF00005 ABC transporter NLHDIDDJ_03452 PF00270 DEAD/DEAH box helicase NLHDIDDJ_03452 PF12343 Cold shock protein DEAD box A NLHDIDDJ_03452 PF00271 Helicase conserved C-terminal domain NLHDIDDJ_03452 PF03880 DbpA RNA binding domain NLHDIDDJ_03453 PF00459 Inositol monophosphatase family NLHDIDDJ_03454 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NLHDIDDJ_03454 PF02780 Transketolase, C-terminal domain NLHDIDDJ_03454 PF02779 Transketolase, pyrimidine binding domain NLHDIDDJ_03455 PF00925 GTP cyclohydrolase II NLHDIDDJ_03456 PF01218 Coproporphyrinogen III oxidase NLHDIDDJ_03457 PF08501 Shikimate dehydrogenase substrate binding domain NLHDIDDJ_03457 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NLHDIDDJ_03457 PF01488 Shikimate / quinate 5-dehydrogenase NLHDIDDJ_03459 PF02770 Acyl-CoA dehydrogenase, middle domain NLHDIDDJ_03459 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NLHDIDDJ_03459 PF12806 Acetyl-CoA dehydrogenase C-terminal like NLHDIDDJ_03459 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NLHDIDDJ_03461 PF04024 PspC domain NLHDIDDJ_03462 PF00571 CBS domain NLHDIDDJ_03465 PF07690 Major Facilitator Superfamily NLHDIDDJ_03466 PF02091 Glycyl-tRNA synthetase alpha subunit NLHDIDDJ_03467 PF02092 Glycyl-tRNA synthetase beta subunit NLHDIDDJ_03467 PF05746 DALR anticodon binding domain NLHDIDDJ_03470 PF00892 EamA-like transporter family NLHDIDDJ_03471 PF03466 LysR substrate binding domain NLHDIDDJ_03471 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_03474 PF05922 Peptidase inhibitor I9 NLHDIDDJ_03474 PF00082 Subtilase family NLHDIDDJ_03477 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NLHDIDDJ_03478 PF04996 Succinylarginine dihydrolase NLHDIDDJ_03479 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_03480 PF04958 Arginine N-succinyltransferase beta subunit NLHDIDDJ_03481 PF00202 Aminotransferase class-III NLHDIDDJ_03482 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NLHDIDDJ_03482 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NLHDIDDJ_03483 PF00324 Amino acid permease NLHDIDDJ_03485 PF08241 Methyltransferase domain NLHDIDDJ_03490 PF01594 AI-2E family transporter NLHDIDDJ_03491 PF00080 Copper/zinc superoxide dismutase (SODC) NLHDIDDJ_03492 PF12805 FUSC-like inner membrane protein yccS NLHDIDDJ_03493 PF07690 Major Facilitator Superfamily NLHDIDDJ_03495 PF02525 Flavodoxin-like fold NLHDIDDJ_03496 PF03992 Antibiotic biosynthesis monooxygenase NLHDIDDJ_03498 PF02913 FAD linked oxidases, C-terminal domain NLHDIDDJ_03498 PF01565 FAD binding domain NLHDIDDJ_03499 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NLHDIDDJ_03499 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NLHDIDDJ_03500 PF00892 EamA-like transporter family NLHDIDDJ_03501 PF00892 EamA-like transporter family NLHDIDDJ_03503 PF01925 Sulfite exporter TauE/SafE NLHDIDDJ_03504 PF09157 Pseudouridine synthase II TruB, C-terminal NLHDIDDJ_03504 PF16198 tRNA pseudouridylate synthase B C-terminal domain NLHDIDDJ_03504 PF01509 TruB family pseudouridylate synthase (N terminal domain) NLHDIDDJ_03505 PF03280 Proteobacterial lipase chaperone protein NLHDIDDJ_03506 PF00561 alpha/beta hydrolase fold NLHDIDDJ_03507 PF01245 Ribosomal protein L19 NLHDIDDJ_03508 PF01746 tRNA (Guanine-1)-methyltransferase NLHDIDDJ_03509 PF01782 RimM N-terminal domain NLHDIDDJ_03509 PF05239 PRC-barrel domain NLHDIDDJ_03510 PF00886 Ribosomal protein S16 NLHDIDDJ_03517 PF07963 Prokaryotic N-terminal methylation motif NLHDIDDJ_03517 PF00114 Pilin (bacterial filament) NLHDIDDJ_03518 PF02401 LytB protein NLHDIDDJ_03519 PF00625 Guanylate kinase NLHDIDDJ_03520 PF01192 RNA polymerase Rpb6 NLHDIDDJ_03521 PF13291 ACT domain NLHDIDDJ_03521 PF04607 Region found in RelA / SpoT proteins NLHDIDDJ_03521 PF02824 TGS domain NLHDIDDJ_03522 PF01042 Endoribonuclease L-PSP NLHDIDDJ_03523 PF04324 BFD-like [2Fe-2S] binding domain NLHDIDDJ_03524 PF00210 Ferritin-like domain NLHDIDDJ_03525 PF15864 Protein glycosylation ligase NLHDIDDJ_03525 PF04932 O-Antigen ligase NLHDIDDJ_03525 PF11846 Virulence factor membrane-bound polymerase, C-terminal NLHDIDDJ_03526 PF07963 Prokaryotic N-terminal methylation motif NLHDIDDJ_03526 PF00114 Pilin (bacterial filament) NLHDIDDJ_03528 PF04536 TPM domain NLHDIDDJ_03529 PF04011 LemA family NLHDIDDJ_03531 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLHDIDDJ_03531 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NLHDIDDJ_03532 PF04898 Glutamate synthase central domain NLHDIDDJ_03532 PF01645 Conserved region in glutamate synthase NLHDIDDJ_03532 PF01493 GXGXG motif NLHDIDDJ_03532 PF00310 Glutamine amidotransferases class-II NLHDIDDJ_03534 PF01761 3-dehydroquinate synthase NLHDIDDJ_03535 PF01202 Shikimate kinase NLHDIDDJ_03536 PF11741 AMIN domain NLHDIDDJ_03536 PF00263 Bacterial type II and III secretion system protein NLHDIDDJ_03536 PF03958 Bacterial type II/III secretion system short domain NLHDIDDJ_03536 PF07660 Secretin and TonB N terminus short domain NLHDIDDJ_03538 PF04350 Pilus assembly protein, PilO NLHDIDDJ_03539 PF05137 Fimbrial assembly protein (PilN) NLHDIDDJ_03540 PF11104 Type IV pilus assembly protein PilM; NLHDIDDJ_03541 PF17092 Penicillin-binding protein OB-like domain NLHDIDDJ_03541 PF00912 Transglycosylase NLHDIDDJ_03541 PF00905 Penicillin binding protein transpeptidase domain NLHDIDDJ_03542 PF13847 Methyltransferase domain NLHDIDDJ_03544 PF00953 Glycosyl transferase family 4 NLHDIDDJ_03545 PF01225 Mur ligase family, catalytic domain NLHDIDDJ_03545 PF02875 Mur ligase family, glutamate ligase domain NLHDIDDJ_03545 PF08245 Mur ligase middle domain NLHDIDDJ_03546 PF01225 Mur ligase family, catalytic domain NLHDIDDJ_03546 PF08245 Mur ligase middle domain NLHDIDDJ_03546 PF02875 Mur ligase family, glutamate ligase domain NLHDIDDJ_03547 PF03717 Penicillin-binding Protein dimerisation domain NLHDIDDJ_03547 PF00905 Penicillin binding protein transpeptidase domain NLHDIDDJ_03549 PF01795 MraW methylase family NLHDIDDJ_03552 PF00749 tRNA synthetases class I (E and Q), catalytic domain NLHDIDDJ_03555 PF00324 Amino acid permease NLHDIDDJ_03561 PF01545 Cation efflux family NLHDIDDJ_03562 PF00873 AcrB/AcrD/AcrF family NLHDIDDJ_03563 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_03563 PF00529 HlyD membrane-fusion protein of T1SS NLHDIDDJ_03568 PF00005 ABC transporter NLHDIDDJ_03568 PF12848 ABC transporter NLHDIDDJ_03569 PF01053 Cys/Met metabolism PLP-dependent enzyme NLHDIDDJ_03570 PF01965 DJ-1/PfpI family NLHDIDDJ_03573 PF00106 short chain dehydrogenase NLHDIDDJ_03574 PF00916 Sulfate permease family NLHDIDDJ_03574 PF01740 STAS domain NLHDIDDJ_03575 PF16921 Tex protein YqgF-like domain NLHDIDDJ_03575 PF17674 HHH domain NLHDIDDJ_03575 PF00575 S1 RNA binding domain NLHDIDDJ_03575 PF09371 Tex-like protein N-terminal domain NLHDIDDJ_03576 PF00072 Response regulator receiver domain NLHDIDDJ_03576 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_03577 PF00672 HAMP domain NLHDIDDJ_03577 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_03577 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_03578 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NLHDIDDJ_03578 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NLHDIDDJ_03579 PF00583 Acetyltransferase (GNAT) family NLHDIDDJ_03583 PF00475 Imidazoleglycerol-phosphate dehydratase NLHDIDDJ_03584 PF00117 Glutamine amidotransferase class-I NLHDIDDJ_03587 PF00977 Histidine biosynthesis protein NLHDIDDJ_03590 PF03992 Antibiotic biosynthesis monooxygenase NLHDIDDJ_03593 PF01636 Phosphotransferase enzyme family NLHDIDDJ_03594 PF00977 Histidine biosynthesis protein NLHDIDDJ_03597 PF00230 Major intrinsic protein NLHDIDDJ_03602 PF02705 K+ potassium transporter NLHDIDDJ_03604 PF12833 Helix-turn-helix domain NLHDIDDJ_03608 PF02525 Flavodoxin-like fold NLHDIDDJ_03609 PF01638 HxlR-like helix-turn-helix NLHDIDDJ_03614 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_03615 PF02311 AraC-like ligand binding domain NLHDIDDJ_03615 PF12833 Helix-turn-helix domain NLHDIDDJ_03616 PF00248 Aldo/keto reductase family NLHDIDDJ_03621 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_03622 PF00529 HlyD membrane-fusion protein of T1SS NLHDIDDJ_03622 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_03623 PF00873 AcrB/AcrD/AcrF family NLHDIDDJ_03625 PF00999 Sodium/hydrogen exchanger family NLHDIDDJ_03630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_03630 PF03466 LysR substrate binding domain NLHDIDDJ_03631 PF07690 Major Facilitator Superfamily NLHDIDDJ_03637 PF01593 Flavin containing amine oxidoreductase NLHDIDDJ_03638 PF05726 Pirin C-terminal cupin domain NLHDIDDJ_03638 PF02678 Pirin NLHDIDDJ_03639 PF00857 Isochorismatase family NLHDIDDJ_03640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_03641 PF00171 Aldehyde dehydrogenase family NLHDIDDJ_03642 PF00202 Aminotransferase class-III NLHDIDDJ_03643 PF00155 Aminotransferase class I and II NLHDIDDJ_03643 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_03644 PF00324 Amino acid permease NLHDIDDJ_03646 PF03591 AzlC protein NLHDIDDJ_03648 PF00436 Single-strand binding protein family NLHDIDDJ_03649 PF07690 Major Facilitator Superfamily NLHDIDDJ_03651 PF02581 Thiamine monophosphate synthase NLHDIDDJ_03651 PF03070 TENA/THI-4/PQQC family NLHDIDDJ_03651 PF08543 Phosphomethylpyrimidine kinase NLHDIDDJ_03652 PF06942 GlpM protein NLHDIDDJ_03654 PF00107 Zinc-binding dehydrogenase NLHDIDDJ_03654 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_03655 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_03655 PF16925 Tetracyclin repressor-like, C-terminal domain NLHDIDDJ_03656 PF17760 UvrA interaction domain NLHDIDDJ_03656 PF17755 UvrA DNA-binding domain NLHDIDDJ_03656 PF00005 ABC transporter NLHDIDDJ_03657 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_03659 PF02028 BCCT, betaine/carnitine/choline family transporter NLHDIDDJ_03661 PF00474 Sodium:solute symporter family NLHDIDDJ_03662 PF04341 Protein of unknown function, DUF485 NLHDIDDJ_03663 PF00672 HAMP domain NLHDIDDJ_03663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_03663 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_03663 PF00072 Response regulator receiver domain NLHDIDDJ_03663 PF01627 Hpt domain NLHDIDDJ_03665 PF00196 Bacterial regulatory proteins, luxR family NLHDIDDJ_03665 PF00072 Response regulator receiver domain NLHDIDDJ_03666 PF03358 NADPH-dependent FMN reductase NLHDIDDJ_03667 PF00296 Luciferase-like monooxygenase NLHDIDDJ_03668 PF01037 Lrp/AsnC ligand binding domain NLHDIDDJ_03669 PF00857 Isochorismatase family NLHDIDDJ_03670 PF13193 AMP-binding enzyme C-terminal domain NLHDIDDJ_03670 PF00501 AMP-binding enzyme NLHDIDDJ_03670 PF16177 Acetyl-coenzyme A synthetase N-terminus NLHDIDDJ_03672 PF00924 Mechanosensitive ion channel NLHDIDDJ_03673 PF04452 RNA methyltransferase NLHDIDDJ_03674 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NLHDIDDJ_03675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NLHDIDDJ_03678 PF03462 PCRF domain NLHDIDDJ_03678 PF00472 RF-1 domain NLHDIDDJ_03680 PF17768 RecJ OB domain NLHDIDDJ_03680 PF02272 DHHA1 domain NLHDIDDJ_03680 PF01368 DHH family NLHDIDDJ_03681 PF01243 Pyridoxamine 5'-phosphate oxidase NLHDIDDJ_03681 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NLHDIDDJ_03682 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NLHDIDDJ_03682 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NLHDIDDJ_03682 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NLHDIDDJ_03682 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NLHDIDDJ_03683 PF00478 IMP dehydrogenase / GMP reductase domain NLHDIDDJ_03683 PF00571 CBS domain NLHDIDDJ_03684 PF03692 Putative zinc- or iron-chelating domain NLHDIDDJ_03685 PF01613 Flavin reductase like domain NLHDIDDJ_03685 PF00258 Flavodoxin NLHDIDDJ_03686 PF00593 TonB dependent receptor NLHDIDDJ_03686 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_03687 PF01169 Uncharacterized protein family UPF0016 NLHDIDDJ_03689 PF02817 e3 binding domain NLHDIDDJ_03689 PF00364 Biotin-requiring enzyme NLHDIDDJ_03689 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NLHDIDDJ_03690 PF00456 Transketolase, thiamine diphosphate binding domain NLHDIDDJ_03690 PF17831 Pyruvate dehydrogenase E1 component middle domain NLHDIDDJ_03691 PF01551 Peptidase family M23 NLHDIDDJ_03693 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NLHDIDDJ_03694 PF00091 Tubulin/FtsZ family, GTPase domain NLHDIDDJ_03694 PF12327 FtsZ family, C-terminal domain NLHDIDDJ_03695 PF02491 SHS2 domain inserted in FTSA NLHDIDDJ_03696 PF03799 Cell division protein FtsQ NLHDIDDJ_03696 PF08478 POTRA domain, FtsQ-type NLHDIDDJ_03697 PF01820 D-ala D-ala ligase N-terminus NLHDIDDJ_03697 PF07478 D-ala D-ala ligase C-terminus NLHDIDDJ_03698 PF08245 Mur ligase middle domain NLHDIDDJ_03698 PF02875 Mur ligase family, glutamate ligase domain NLHDIDDJ_03698 PF01225 Mur ligase family, catalytic domain NLHDIDDJ_03699 PF03033 Glycosyltransferase family 28 N-terminal domain NLHDIDDJ_03699 PF04101 Glycosyltransferase family 28 C-terminal domain NLHDIDDJ_03700 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NLHDIDDJ_03700 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NLHDIDDJ_03702 PF00593 TonB dependent receptor NLHDIDDJ_03702 PF07715 TonB-dependent Receptor Plug Domain NLHDIDDJ_03703 PF00156 Phosphoribosyl transferase domain NLHDIDDJ_03704 PF03372 Endonuclease/Exonuclease/phosphatase family NLHDIDDJ_03705 PF03960 ArsC family NLHDIDDJ_03707 PF07859 alpha/beta hydrolase fold NLHDIDDJ_03708 PF00990 Diguanylate cyclase, GGDEF domain NLHDIDDJ_03708 PF07694 5TMR of 5TMR-LYT NLHDIDDJ_03709 PF02683 Cytochrome C biogenesis protein transmembrane region NLHDIDDJ_03709 PF11412 Disulphide bond corrector protein DsbC NLHDIDDJ_03715 PF00576 HIUase/Transthyretin family NLHDIDDJ_03716 PF00860 Permease family NLHDIDDJ_03718 PF01494 FAD binding domain NLHDIDDJ_03719 PF03561 Allantoicase repeat NLHDIDDJ_03720 PF04115 Ureidoglycolate lyase NLHDIDDJ_03721 PF00106 short chain dehydrogenase NLHDIDDJ_03722 PF01751 Toprim domain NLHDIDDJ_03722 PF00204 DNA gyrase B NLHDIDDJ_03722 PF00986 DNA gyrase B subunit, carboxyl terminus NLHDIDDJ_03722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_03723 PF05728 Uncharacterised protein family (UPF0227) NLHDIDDJ_03726 PF10135 Rod binding protein NLHDIDDJ_03726 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NLHDIDDJ_03728 PF04717 Type VI secretion system, phage-baseplate injector NLHDIDDJ_03728 PF13296 Putative type VI secretion system Rhs element Vgr NLHDIDDJ_03728 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NLHDIDDJ_03729 PF02600 Disulfide bond formation protein DsbB NLHDIDDJ_03730 PF04262 Glutamate-cysteine ligase NLHDIDDJ_03733 PF04286 Protein of unknown function (DUF445) NLHDIDDJ_03734 PF00155 Aminotransferase class I and II NLHDIDDJ_03735 PF01554 MatE NLHDIDDJ_03736 PF00106 short chain dehydrogenase NLHDIDDJ_03738 PF00072 Response regulator receiver domain NLHDIDDJ_03738 PF00486 Transcriptional regulatory protein, C terminal NLHDIDDJ_03739 PF11808 Phosphate regulon sensor protein PhoR NLHDIDDJ_03739 PF00989 PAS fold NLHDIDDJ_03739 PF00512 His Kinase A (phospho-acceptor) domain NLHDIDDJ_03739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLHDIDDJ_03741 PF02666 Phosphatidylserine decarboxylase NLHDIDDJ_03742 PF00581 Rhodanese-like domain NLHDIDDJ_03743 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NLHDIDDJ_03743 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NLHDIDDJ_03744 PF02580 D-Tyr-tRNA(Tyr) deacylase NLHDIDDJ_03749 PF00925 GTP cyclohydrolase II NLHDIDDJ_03749 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NLHDIDDJ_03750 PF00885 6,7-dimethyl-8-ribityllumazine synthase NLHDIDDJ_03751 PF01029 NusB family NLHDIDDJ_03752 PF02769 AIR synthase related protein, C-terminal domain NLHDIDDJ_03752 PF00586 AIR synthase related protein, N-terminal domain NLHDIDDJ_03753 PF04608 Phosphatidylglycerophosphatase A NLHDIDDJ_03754 PF12804 MobA-like NTP transferase domain NLHDIDDJ_03754 PF14602 Hexapeptide repeat of succinyl-transferase NLHDIDDJ_03754 PF00132 Bacterial transferase hexapeptide (six repeats) NLHDIDDJ_03755 PF01380 SIS domain NLHDIDDJ_03759 PF01177 Asp/Glu/Hydantoin racemase NLHDIDDJ_03762 PF00491 Arginase family NLHDIDDJ_03763 PF01979 Amidohydrolase family NLHDIDDJ_03764 PF00324 Amino acid permease NLHDIDDJ_03765 PF00221 Aromatic amino acid lyase NLHDIDDJ_03766 PF01175 Urocanase Rossmann-like domain NLHDIDDJ_03766 PF17391 Urocanase N-terminal domain NLHDIDDJ_03766 PF17392 Urocanase C-terminal domain NLHDIDDJ_03767 PF05962 HutD NLHDIDDJ_03768 PF07702 UTRA domain NLHDIDDJ_03768 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_03770 PF02492 CobW/HypB/UreG, nucleotide-binding domain NLHDIDDJ_03770 PF07683 Cobalamin synthesis protein cobW C-terminal domain NLHDIDDJ_03772 PF00324 Amino acid permease NLHDIDDJ_03774 PF14497 Glutathione S-transferase, C-terminal domain NLHDIDDJ_03774 PF02798 Glutathione S-transferase, N-terminal domain NLHDIDDJ_03775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NLHDIDDJ_03777 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NLHDIDDJ_03778 PF04463 Protein of unknown function (DUF523) NLHDIDDJ_03779 PF01554 MatE NLHDIDDJ_03780 PF01758 Sodium Bile acid symporter family NLHDIDDJ_03781 PF00857 Isochorismatase family NLHDIDDJ_03782 PF00701 Dihydrodipicolinate synthetase family NLHDIDDJ_03784 PF01259 SAICAR synthetase NLHDIDDJ_03786 PF01226 Formate/nitrite transporter NLHDIDDJ_03787 PF00004 ATPase family associated with various cellular activities (AAA) NLHDIDDJ_03787 PF12002 MgsA AAA+ ATPase C terminal NLHDIDDJ_03787 PF16193 AAA C-terminal domain NLHDIDDJ_03788 PF07995 Glucose / Sorbosone dehydrogenase NLHDIDDJ_03789 PF03692 Putative zinc- or iron-chelating domain NLHDIDDJ_03790 PF07043 Protein of unknown function (DUF1328) NLHDIDDJ_03793 PF00633 Helix-hairpin-helix motif NLHDIDDJ_03793 PF00730 HhH-GPD superfamily base excision DNA repair protein NLHDIDDJ_03793 PF14815 NUDIX domain NLHDIDDJ_03793 PF10576 Iron-sulfur binding domain of endonuclease III NLHDIDDJ_03796 PF03352 Methyladenine glycosylase NLHDIDDJ_03797 PF00107 Zinc-binding dehydrogenase NLHDIDDJ_03797 PF08240 Alcohol dehydrogenase GroES-like domain NLHDIDDJ_03798 PF00392 Bacterial regulatory proteins, gntR family NLHDIDDJ_03798 PF00155 Aminotransferase class I and II NLHDIDDJ_03800 PF03466 LysR substrate binding domain NLHDIDDJ_03800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_03801 PF00248 Aldo/keto reductase family NLHDIDDJ_03802 PF07690 Major Facilitator Superfamily NLHDIDDJ_03804 PF05173 Dihydrodipicolinate reductase, C-terminus NLHDIDDJ_03804 PF01113 Dihydrodipicolinate reductase, N-terminus NLHDIDDJ_03806 PF00226 DnaJ domain NLHDIDDJ_03806 PF01556 DnaJ C terminal domain NLHDIDDJ_03806 PF00684 DnaJ central domain NLHDIDDJ_03808 PF00873 AcrB/AcrD/AcrF family NLHDIDDJ_03809 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLHDIDDJ_03810 PF08361 MAATS-type transcriptional repressor, C-terminal region NLHDIDDJ_03810 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_03811 PF00311 Phosphoenolpyruvate carboxylase NLHDIDDJ_03812 PF00860 Permease family NLHDIDDJ_03813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_03813 PF03466 LysR substrate binding domain NLHDIDDJ_03816 PF00920 Dehydratase family NLHDIDDJ_03817 PF00551 Formyl transferase NLHDIDDJ_03817 PF02911 Formyl transferase, C-terminal domain NLHDIDDJ_03818 PF01189 16S rRNA methyltransferase RsmB/F NLHDIDDJ_03818 PF01029 NusB family NLHDIDDJ_03820 PF00209 Sodium:neurotransmitter symporter family NLHDIDDJ_03833 PF13610 DDE domain NLHDIDDJ_03834 PF03466 LysR substrate binding domain NLHDIDDJ_03834 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_03838 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLHDIDDJ_03838 PF03466 LysR substrate binding domain NLHDIDDJ_03900 PF01051 Initiator Replication protein NLHDIDDJ_03907 PF05973 Phage derived protein Gp49-like (DUF891) NLHDIDDJ_04000 PF01051 Initiator Replication protein NLHDIDDJ_04002 PF07690 Major Facilitator Superfamily NLHDIDDJ_04003 PF00440 Bacterial regulatory proteins, tetR family NLHDIDDJ_04003 PF02909 Tetracyclin repressor-like, C-terminal domain NLHDIDDJ_04006 PF00593 TonB dependent receptor NLHDIDDJ_04006 PF07715 TonB-dependent Receptor Plug Domain