locus-tag	class	description
NLHDIDDJ_00002	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
NLHDIDDJ_00003	COG0596	Alpha beta hydrolase
NLHDIDDJ_00008	COG0488	(ABC) transporter
NLHDIDDJ_00009	COG0586	Pfam SNARE associated Golgi protein
NLHDIDDJ_00011	COG0187	DNA topoisomerase II activity
NLHDIDDJ_00013	COG0592	DNA-directed DNA polymerase activity
NLHDIDDJ_00018	COG0706	membrane insertase activity
NLHDIDDJ_00021	COG1230	cation diffusion facilitator family transporter
NLHDIDDJ_00022	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NLHDIDDJ_00026	COG0402	S-adenosylhomocysteine deaminase activity
NLHDIDDJ_00029	COG0754	glutathionylspermidine amidase activity
NLHDIDDJ_00031	COG0861	Integral membrane protein TerC family
NLHDIDDJ_00032	COG0671	phosphoesterase, PA-phosphatase related
NLHDIDDJ_00034	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NLHDIDDJ_00037	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
NLHDIDDJ_00038	COG2951	lytic endotransglycosylase activity
NLHDIDDJ_00044	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00048	COG0657	acetylesterase activity
NLHDIDDJ_00049	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NLHDIDDJ_00056	COG1047	Peptidyl-prolyl cis-trans
NLHDIDDJ_00058	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
NLHDIDDJ_00059	COG0196	riboflavin kinase activity
NLHDIDDJ_00061	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NLHDIDDJ_00062	COG1309	transcriptional regulator
NLHDIDDJ_00063	COG1116	anion transmembrane transporter activity
NLHDIDDJ_00064	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NLHDIDDJ_00065	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NLHDIDDJ_00066	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NLHDIDDJ_00067	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NLHDIDDJ_00071	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_00072	COG0546	phosphoglycolate phosphatase activity
NLHDIDDJ_00083	COG3023	N-Acetylmuramoyl-L-alanine amidase
NLHDIDDJ_00084	COG0728	peptidoglycan biosynthetic process
NLHDIDDJ_00089	COG1596	polysaccharide export
NLHDIDDJ_00090	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
NLHDIDDJ_00092	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NLHDIDDJ_00093	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
NLHDIDDJ_00094	COG2089	acid synthase
NLHDIDDJ_00096	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NLHDIDDJ_00097	COG1083	cytidylyl-transferase
NLHDIDDJ_00098	COG2244	polysaccharide biosynthetic process
NLHDIDDJ_00107	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NLHDIDDJ_00108	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
NLHDIDDJ_00109	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NLHDIDDJ_00112	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NLHDIDDJ_00113	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NLHDIDDJ_00115	COG2186	Transcriptional regulator
NLHDIDDJ_00117	COG0277	FAD linked oxidase domain protein
NLHDIDDJ_00118	COG1448	Aminotransferase
NLHDIDDJ_00119	COG1802	Transcriptional regulator
NLHDIDDJ_00122	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
NLHDIDDJ_00123	COG1196	nuclear chromosome segregation
NLHDIDDJ_00133	COG0564	pseudouridine synthase activity
NLHDIDDJ_00141	COG0251	oxidation-reduction process
NLHDIDDJ_00142	COG1113	amino acid transport
NLHDIDDJ_00143	COG1113	amino acid transport
NLHDIDDJ_00147	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NLHDIDDJ_00148	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_00149	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_00150	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_00151	COG0477	Major facilitator Superfamily
NLHDIDDJ_00152	COG3916	Acyl-homoserine-lactone synthase
NLHDIDDJ_00154	COG2197	response regulator
NLHDIDDJ_00156	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_00157	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NLHDIDDJ_00157	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NLHDIDDJ_00157	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
NLHDIDDJ_00157	COG3321	synthase
NLHDIDDJ_00161	COG2267	carboxylic ester hydrolase activity
NLHDIDDJ_00165	COG0271	Belongs to the BolA IbaG family
NLHDIDDJ_00167	COG1192	Involved in chromosome partitioning
NLHDIDDJ_00170	COG0586	Pfam SNARE associated Golgi protein
NLHDIDDJ_00171	COG2259	Doxx family
NLHDIDDJ_00172	COG4399	Belongs to the UPF0754 family
NLHDIDDJ_00173	COG0519	Catalyzes the synthesis of GMP from XMP
NLHDIDDJ_00173	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NLHDIDDJ_00174	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NLHDIDDJ_00182	COG0281	malic enzyme
NLHDIDDJ_00183	COG2837	iron assimilation
NLHDIDDJ_00184	COG1280	lysine exporter protein (LysE YggA)
NLHDIDDJ_00185	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NLHDIDDJ_00186	COG1121	(ABC) transporter
NLHDIDDJ_00199	COG0386	Belongs to the glutathione peroxidase family
NLHDIDDJ_00202	COG1309	transcriptional regulator
NLHDIDDJ_00203	COG0697	spore germination
NLHDIDDJ_00205	COG0758	DNA mediated transformation
NLHDIDDJ_00212	COG1309	transcriptional regulator
NLHDIDDJ_00219	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NLHDIDDJ_00221	COG0655	NAD(P)H dehydrogenase (quinone) activity
NLHDIDDJ_00228	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NLHDIDDJ_00230	COG0477	Major facilitator Superfamily
NLHDIDDJ_00232	COG1253	flavin adenine dinucleotide binding
NLHDIDDJ_00234	COG2860	membrane
NLHDIDDJ_00235	COG0477	Major facilitator Superfamily
NLHDIDDJ_00237	COG0318	PFAM AMP-dependent synthetase and ligase
NLHDIDDJ_00240	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NLHDIDDJ_00244	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NLHDIDDJ_00245	COG0235	Class ii aldolase
NLHDIDDJ_00246	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NLHDIDDJ_00247	COG0606	chelatase, subunit chli
NLHDIDDJ_00249	COG0347	Belongs to the P(II) protein family
NLHDIDDJ_00250	COG0004	ammonium transporteR
NLHDIDDJ_00252	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NLHDIDDJ_00252	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NLHDIDDJ_00260	COG0795	lipopolysaccharide-transporting ATPase activity
NLHDIDDJ_00261	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NLHDIDDJ_00262	COG0793	Belongs to the peptidase S41A family
NLHDIDDJ_00265	COG2197	response regulator
NLHDIDDJ_00267	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
NLHDIDDJ_00269	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NLHDIDDJ_00270	COG4974	Belongs to the 'phage' integrase family
NLHDIDDJ_00275	COG0772	Belongs to the SEDS family
NLHDIDDJ_00276	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NLHDIDDJ_00277	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NLHDIDDJ_00278	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
NLHDIDDJ_00283	COG0697	spore germination
NLHDIDDJ_00284	COG1538	Outer membrane efflux protein
NLHDIDDJ_00288	COG3275	phosphorelay sensor kinase activity
NLHDIDDJ_00290	COG0181	hydroxymethylbilane synthase activity
NLHDIDDJ_00299	COG1716	ATPase activity
NLHDIDDJ_00300	COG0546	phosphoglycolate phosphatase activity
NLHDIDDJ_00319	COG0596	Alpha beta hydrolase
NLHDIDDJ_00320	COG2056	Na+-H+ antiporter family
NLHDIDDJ_00323	COG0326	Molecular chaperone. Has ATPase activity
NLHDIDDJ_00326	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
NLHDIDDJ_00338	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NLHDIDDJ_00339	COG2169	Transcriptional regulator
NLHDIDDJ_00339	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NLHDIDDJ_00345	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NLHDIDDJ_00347	COG0497	DNA recombination
NLHDIDDJ_00350	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NLHDIDDJ_00352	COG0237	dephospho-CoA kinase activity
NLHDIDDJ_00362	COG0195	Participates in both transcription termination and antitermination
NLHDIDDJ_00365	COG1320	monovalent cation:proton antiporter activity
NLHDIDDJ_00366	COG2212	antiporter activity
NLHDIDDJ_00367	COG1863	multisubunit Na H antiporter MnhE subunit
NLHDIDDJ_00368	COG0651	ATP synthesis coupled electron transport
NLHDIDDJ_00369	COG1006	Multisubunit Na H antiporter MnhC subunit
NLHDIDDJ_00370	COG2111	Na H antiporter
NLHDIDDJ_00370	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NLHDIDDJ_00373	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NLHDIDDJ_00377	COG2226	methyltransferase
NLHDIDDJ_00381	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
NLHDIDDJ_00382	COG1074	ATP-dependent DNA helicase activity
NLHDIDDJ_00383	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NLHDIDDJ_00384	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
NLHDIDDJ_00387	COG0598	Magnesium transport protein CorA
NLHDIDDJ_00388	COG0789	Transcriptional regulator
NLHDIDDJ_00389	COG0484	heat shock protein binding
NLHDIDDJ_00392	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NLHDIDDJ_00392	COG0475	glutathione-regulated potassium exporter activity
NLHDIDDJ_00393	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NLHDIDDJ_00397	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NLHDIDDJ_00399	COG4535	Mg2 and Co2 transporter CorC
NLHDIDDJ_00400	COG0425	Belongs to the sulfur carrier protein TusA family
NLHDIDDJ_00402	COG0644	oxidoreductase
NLHDIDDJ_00402	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
NLHDIDDJ_00404	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
NLHDIDDJ_00407	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NLHDIDDJ_00408	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
NLHDIDDJ_00410	COG0493	'glutamate synthase
NLHDIDDJ_00410	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
NLHDIDDJ_00415	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NLHDIDDJ_00418	COG0534	Mate efflux family protein
NLHDIDDJ_00420	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NLHDIDDJ_00421	COG4221	oxidoreductase activity
NLHDIDDJ_00422	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00425	COG0318	PFAM AMP-dependent synthetase and ligase
NLHDIDDJ_00426	COG1530	ribonuclease E activity
NLHDIDDJ_00428	COG0546	phosphoglycolate phosphatase activity
NLHDIDDJ_00429	COG2378	regulation of single-species biofilm formation
NLHDIDDJ_00430	COG0625	glutathione transferase activity
NLHDIDDJ_00432	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00443	COG0473	3-isopropylmalate dehydrogenase activity
NLHDIDDJ_00454	COG1301	dicarboxylic acid transport
NLHDIDDJ_00456	COG1560	Kdo2-lipid A biosynthetic process
NLHDIDDJ_00457	COG1280	lysine exporter protein (LysE YggA)
NLHDIDDJ_00458	COG0488	(ABC) transporter
NLHDIDDJ_00459	COG2900	Belongs to the SlyX family
NLHDIDDJ_00461	COG1733	regulation of RNA biosynthetic process
NLHDIDDJ_00466	COG0210	DNA helicase
NLHDIDDJ_00467	COG0724	RNA recognition motif
NLHDIDDJ_00471	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NLHDIDDJ_00471	COG4651	solute:proton antiporter activity
NLHDIDDJ_00476	COG0788	formyltetrahydrofolate deformylase activity
NLHDIDDJ_00506	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
NLHDIDDJ_00510	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NLHDIDDJ_00513	COG1192	Involved in chromosome partitioning
NLHDIDDJ_00526	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NLHDIDDJ_00542	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NLHDIDDJ_00547	COG5001	Diguanylate cyclase
NLHDIDDJ_00555	COG0714	Associated with various cellular activities
NLHDIDDJ_00557	COG0629	single-stranded DNA binding
NLHDIDDJ_00566	COG0633	Ferredoxin
NLHDIDDJ_00610	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NLHDIDDJ_00630	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NLHDIDDJ_00637	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
NLHDIDDJ_00639	COG0210	DNA helicase
NLHDIDDJ_00644	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NLHDIDDJ_00658	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NLHDIDDJ_00658	COG2813	Specifically methylates the guanine in position
NLHDIDDJ_00660	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NLHDIDDJ_00662	COG4774	siderophore transport
NLHDIDDJ_00664	COG0740	serine-type endopeptidase activity
NLHDIDDJ_00668	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
NLHDIDDJ_00668	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
NLHDIDDJ_00669	COG0280	phosphate acetyltransferase
NLHDIDDJ_00669	COG0857	belongs to the CobB CobQ family
NLHDIDDJ_00670	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NLHDIDDJ_00672	COG0800	Aldolase
NLHDIDDJ_00674	COG3265	gluconokinase activity
NLHDIDDJ_00675	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_00677	COG2267	carboxylic ester hydrolase activity
NLHDIDDJ_00680	COG0793	Belongs to the peptidase S41A family
NLHDIDDJ_00687	COG1426	Protein conserved in bacteria
NLHDIDDJ_00696	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NLHDIDDJ_00698	COG0318	PFAM AMP-dependent synthetase and ligase
NLHDIDDJ_00699	COG1216	Glycosyl transferase, family 2
NLHDIDDJ_00701	COG2986	histidine ammonia-lyase
NLHDIDDJ_00709	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_00710	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NLHDIDDJ_00714	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NLHDIDDJ_00716	COG1162	GTPase activity
NLHDIDDJ_00717	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
NLHDIDDJ_00720	COG1538	Outer membrane efflux protein
NLHDIDDJ_00721	COG1136	(ABC) transporter
NLHDIDDJ_00721	COG0577	efflux transmembrane transporter activity
NLHDIDDJ_00722	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NLHDIDDJ_00727	COG0028	Belongs to the TPP enzyme family
NLHDIDDJ_00728	COG0440	acetolactate synthase activity
NLHDIDDJ_00739	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
NLHDIDDJ_00742	COG0084	hydrolase, TatD family'
NLHDIDDJ_00744	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NLHDIDDJ_00745	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00747	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NLHDIDDJ_00748	COG2814	Major facilitator Superfamily
NLHDIDDJ_00750	COG0697	spore germination
NLHDIDDJ_00757	COG3622	Belongs to the hyi family
NLHDIDDJ_00758	COG2084	Dehydrogenase
NLHDIDDJ_00759	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_00760	COG2205	protein histidine kinase activity
NLHDIDDJ_00760	COG0784	Response regulator, receiver
NLHDIDDJ_00760	COG5002	protein histidine kinase activity
NLHDIDDJ_00764	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NLHDIDDJ_00766	COG3956	TIGRFAM MazG family protein
NLHDIDDJ_00767	COG1555	photosystem II stabilization
NLHDIDDJ_00768	COG0617	tRNA 3'-terminal CCA addition
NLHDIDDJ_00769	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NLHDIDDJ_00773	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NLHDIDDJ_00774	COG3028	Belongs to the UPF0307 family
NLHDIDDJ_00775	COG0318	PFAM AMP-dependent synthetase and ligase
NLHDIDDJ_00778	COG0625	glutathione transferase activity
NLHDIDDJ_00779	COG1238	metal cluster binding
NLHDIDDJ_00788	COG0072	phenylalanine-tRNA ligase activity
NLHDIDDJ_00793	COG0248	Ppx GppA phosphatase
NLHDIDDJ_00795	COG0037	tRNA processing
NLHDIDDJ_00803	COG1764	response to oxidative stress
NLHDIDDJ_00804	COG1846	Transcriptional regulator
NLHDIDDJ_00806	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NLHDIDDJ_00818	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
NLHDIDDJ_00819	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
NLHDIDDJ_00820	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NLHDIDDJ_00822	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
NLHDIDDJ_00832	COG1214	PFAM Peptidase M22, glycoprotease
NLHDIDDJ_00837	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
NLHDIDDJ_00838	COG0561	phosphatase activity
NLHDIDDJ_00840	COG2132	Multicopper oxidase
NLHDIDDJ_00841	COG3667	copper resistance
NLHDIDDJ_00845	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
NLHDIDDJ_00846	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
NLHDIDDJ_00852	COG1063	alcohol dehydrogenase
NLHDIDDJ_00853	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00854	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_00855	COG2814	Major facilitator Superfamily
NLHDIDDJ_00856	COG1804	L-carnitine dehydratase bile acid-inducible protein F
NLHDIDDJ_00858	COG1053	succinate dehydrogenase
NLHDIDDJ_00859	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00862	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00869	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NLHDIDDJ_00880	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NLHDIDDJ_00883	COG0745	RESPONSE REGULATOR receiver
NLHDIDDJ_00891	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
NLHDIDDJ_00897	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NLHDIDDJ_00898	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NLHDIDDJ_00902	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00906	COG0668	transmembrane transport
NLHDIDDJ_00908	COG2081	HI0933 family
NLHDIDDJ_00909	COG2515	1-aminocyclopropane-1-carboxylate deaminase
NLHDIDDJ_00910	COG1566	PFAM secretion protein HlyD family protein
NLHDIDDJ_00915	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NLHDIDDJ_00915	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NLHDIDDJ_00917	COG0489	protein tyrosine kinase activity
NLHDIDDJ_00927	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NLHDIDDJ_00929	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NLHDIDDJ_00932	COG0730	response to heat
NLHDIDDJ_00934	COG1196	nuclear chromosome segregation
NLHDIDDJ_00938	COG2223	nitrite transmembrane transporter activity
NLHDIDDJ_00939	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
NLHDIDDJ_00940	COG1877	trehalose-phosphatase activity
NLHDIDDJ_00941	COG2226	methyltransferase
NLHDIDDJ_00941	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NLHDIDDJ_00941	COG0596	Alpha beta hydrolase
NLHDIDDJ_00944	COG4106	trans-aconitate 2-methyltransferase activity
NLHDIDDJ_00947	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
NLHDIDDJ_00948	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
NLHDIDDJ_00949	COG0009	L-threonylcarbamoyladenylate synthase
NLHDIDDJ_00950	COG3101	peptidyl-lysine hydroxylation
NLHDIDDJ_00951	COG1399	metal-binding, possibly nucleic acid-binding protein
NLHDIDDJ_00956	COG1652	LysM domain
NLHDIDDJ_00957	COG0351	phosphomethylpyrimidine kinase
NLHDIDDJ_00957	COG0352	thiamine-phosphate diphosphorylase activity
NLHDIDDJ_00957	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
NLHDIDDJ_00959	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NLHDIDDJ_00965	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NLHDIDDJ_00970	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
NLHDIDDJ_00973	COG0358	DNA primase activity
NLHDIDDJ_00975	COG0564	pseudouridine synthase activity
NLHDIDDJ_00980	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NLHDIDDJ_00983	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_00984	COG0473	3-isopropylmalate dehydrogenase activity
NLHDIDDJ_00986	COG0657	acetylesterase activity
NLHDIDDJ_00988	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_00992	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NLHDIDDJ_00992	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NLHDIDDJ_00996	COG1981	membrane
NLHDIDDJ_01005	COG0456	acetyltransferase
NLHDIDDJ_01007	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
NLHDIDDJ_01008	COG0492	ferredoxin-NADP+ reductase activity
NLHDIDDJ_01009	COG1674	ftsk spoiiie
NLHDIDDJ_01009	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NLHDIDDJ_01010	COG1280	lysine exporter protein (LysE YggA)
NLHDIDDJ_01013	COG2894	cell division
NLHDIDDJ_01016	COG0204	Acyl-transferase
NLHDIDDJ_01017	COG2885	chlorophyll binding
NLHDIDDJ_01019	COG0210	DNA helicase
NLHDIDDJ_01021	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NLHDIDDJ_01024	COG0121	glutamine amidotransferase
NLHDIDDJ_01028	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NLHDIDDJ_01029	COG0735	belongs to the Fur family
NLHDIDDJ_01034	COG0420	3'-5' exonuclease activity
NLHDIDDJ_01038	COG1090	epimerase
NLHDIDDJ_01041	COG2050	protein possibly involved in aromatic compounds catabolism
NLHDIDDJ_01043	COG2814	Major facilitator Superfamily
NLHDIDDJ_01044	COG0405	Gamma-glutamyltransferase
NLHDIDDJ_01049	COG0732	type I restriction modification DNA specificity domain
NLHDIDDJ_01056	COG0477	Major facilitator Superfamily
NLHDIDDJ_01057	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NLHDIDDJ_01062	COG0531	amino acid
NLHDIDDJ_01063	COG2040	homocysteine
NLHDIDDJ_01068	COG1309	transcriptional regulator
NLHDIDDJ_01069	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NLHDIDDJ_01070	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NLHDIDDJ_01072	COG1607	acyl-coa hydrolase
NLHDIDDJ_01074	COG0523	cobalamin synthesis protein
NLHDIDDJ_01076	COG4681	YaeQ
NLHDIDDJ_01078	COG0726	polysaccharide deacetylase
NLHDIDDJ_01078	COG1649	PFAM Uncharacterised BCR, COG1649
NLHDIDDJ_01079	COG1215	transferase activity, transferring glycosyl groups
NLHDIDDJ_01081	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_01084	COG1414	Transcriptional regulator
NLHDIDDJ_01088	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_01090	COG0446	pyridine nucleotide-disulphide oxidoreductase
NLHDIDDJ_01091	COG2271	Major facilitator Superfamily
NLHDIDDJ_01093	COG2267	carboxylic ester hydrolase activity
NLHDIDDJ_01094	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_01097	COG0028	Belongs to the TPP enzyme family
NLHDIDDJ_01099	COG0477	Major facilitator Superfamily
NLHDIDDJ_01100	COG0242	peptide deformylase activity
NLHDIDDJ_01101	COG2066	Belongs to the glutaminase family
NLHDIDDJ_01102	COG2207	Transcriptional regulator
NLHDIDDJ_01103	COG2223	nitrite transmembrane transporter activity
NLHDIDDJ_01106	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01107	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_01108	COG2271	Major facilitator Superfamily
NLHDIDDJ_01109	COG3959	Transketolase, thiamine diphosphate binding domain
NLHDIDDJ_01110	COG3958	Transketolase
NLHDIDDJ_01112	COG0306	phosphate transporter
NLHDIDDJ_01116	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NLHDIDDJ_01125	COG4181	ATPase activity
NLHDIDDJ_01126	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
NLHDIDDJ_01131	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01133	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NLHDIDDJ_01134	COG1773	rubredoxin
NLHDIDDJ_01144	COG2851	Citrate transporter
NLHDIDDJ_01145	COG1253	flavin adenine dinucleotide binding
NLHDIDDJ_01153	COG0804	urea catabolic process
NLHDIDDJ_01155	COG0830	nickel cation binding
NLHDIDDJ_01158	COG0742	ribosomal rna small subunit methyltransferase
NLHDIDDJ_01159	COG0768	penicillin binding
NLHDIDDJ_01163	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NLHDIDDJ_01164	COG2878	Part of a membrane complex involved in electron transport
NLHDIDDJ_01165	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
NLHDIDDJ_01167	COG3384	dioxygenase
NLHDIDDJ_01173	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
NLHDIDDJ_01224	COG0741	lytic transglycosylase activity
NLHDIDDJ_01224	COG1196	nuclear chromosome segregation
NLHDIDDJ_01224	COG0739	heme binding
NLHDIDDJ_01234	COG2194	sulfuric ester hydrolase activity
NLHDIDDJ_01241	COG0006	proline dipeptidase activity
NLHDIDDJ_01242	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NLHDIDDJ_01243	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NLHDIDDJ_01247	COG1279	arginine transmembrane transporter activity
NLHDIDDJ_01248	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01256	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NLHDIDDJ_01257	COG0741	lytic transglycosylase activity
NLHDIDDJ_01257	COG0741	lytic transglycosylase activity
NLHDIDDJ_01257	COG1388	LysM domain
NLHDIDDJ_01257	COG1388	LysM domain
NLHDIDDJ_01259	COG4174	ABC transporter (Permease)
NLHDIDDJ_01260	COG4239	(ABC) transporter, permease
NLHDIDDJ_01261	COG4172	Belongs to the ABC transporter superfamily
NLHDIDDJ_01266	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NLHDIDDJ_01268	COG2203	Gaf domain
NLHDIDDJ_01268	COG3706	GGDEF domain
NLHDIDDJ_01268	COG5001	Diguanylate cyclase
NLHDIDDJ_01268	COG4251	negative regulation of phosphorylation
NLHDIDDJ_01270	COG0446	pyridine nucleotide-disulphide oxidoreductase
NLHDIDDJ_01270	COG1902	pentaerythritol trinitrate reductase activity
NLHDIDDJ_01273	COG0582	viral genome integration into host DNA
NLHDIDDJ_01304	COG4269	membrane
NLHDIDDJ_01312	COG1113	amino acid transport
NLHDIDDJ_01314	COG0531	amino acid
NLHDIDDJ_01318	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_01322	COG1113	amino acid transport
NLHDIDDJ_01325	COG0697	spore germination
NLHDIDDJ_01326	COG2721	sulfolactate sulfo-lyase activity
NLHDIDDJ_01327	COG2271	Major facilitator Superfamily
NLHDIDDJ_01328	COG4948	Mandelate Racemase Muconate Lactonizing
NLHDIDDJ_01330	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_01331	COG2186	Transcriptional regulator
NLHDIDDJ_01336	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_01338	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_01339	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_01340	COG2814	Major facilitator Superfamily
NLHDIDDJ_01343	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NLHDIDDJ_01346	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NLHDIDDJ_01355	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
NLHDIDDJ_01356	COG2072	flavoprotein involved in K transport
NLHDIDDJ_01357	COG0300	oxidoreductase activity
NLHDIDDJ_01359	COG1309	transcriptional regulator
NLHDIDDJ_01360	COG1741	Belongs to the pirin family
NLHDIDDJ_01363	COG2072	flavoprotein involved in K transport
NLHDIDDJ_01365	COG2252	PERMEase
NLHDIDDJ_01366	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NLHDIDDJ_01367	COG3038	cytochrome b561
NLHDIDDJ_01369	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NLHDIDDJ_01371	COG0527	aspartate kinase activity
NLHDIDDJ_01373	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NLHDIDDJ_01375	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NLHDIDDJ_01378	COG0667	Aldo Keto reductase
NLHDIDDJ_01380	COG1765	OsmC-like protein
NLHDIDDJ_01383	COG0542	response to heat
NLHDIDDJ_01392	COG0625	glutathione transferase activity
NLHDIDDJ_01397	COG0220	tRNA (guanine-N7-)-methyltransferase activity
NLHDIDDJ_01401	COG3634	alkyl hydroperoxide reductase activity
NLHDIDDJ_01403	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
NLHDIDDJ_01405	COG0450	alkyl hydroperoxide reductase
NLHDIDDJ_01406	COG1643	Atp-dependent helicase
NLHDIDDJ_01409	COG2814	Major facilitator Superfamily
NLHDIDDJ_01410	COG3135	benzoate transporter
NLHDIDDJ_01411	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_01412	COG0633	Ferredoxin
NLHDIDDJ_01412	COG0543	2 iron, 2 sulfur cluster binding
NLHDIDDJ_01413	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
NLHDIDDJ_01414	COG4638	Rieske (2fe-2S)
NLHDIDDJ_01415	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01425	COG1570	exodeoxyribonuclease VII activity
NLHDIDDJ_01432	COG1280	lysine exporter protein (LysE YggA)
NLHDIDDJ_01433	COG1278	Cold shock
NLHDIDDJ_01440	COG2814	Major facilitator Superfamily
NLHDIDDJ_01449	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
NLHDIDDJ_01449	COG0517	IMP dehydrogenase activity
NLHDIDDJ_01450	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NLHDIDDJ_01452	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
NLHDIDDJ_01453	COG1137	ATPase activity
NLHDIDDJ_01454	COG1538	Outer membrane efflux protein
NLHDIDDJ_01460	COG4122	O-methyltransferase activity
NLHDIDDJ_01462	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
NLHDIDDJ_01465	COG1522	sequence-specific DNA binding
NLHDIDDJ_01466	COG5006	permease, DMT superfamily
NLHDIDDJ_01468	COG1560	Kdo2-lipid A biosynthetic process
NLHDIDDJ_01470	COG2814	Major facilitator Superfamily
NLHDIDDJ_01474	COG1250	3-hydroxyacyl-CoA dehydrogenase
NLHDIDDJ_01479	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01480	COG1914	H( )-stimulated, divalent metal cation uptake system
NLHDIDDJ_01484	COG4770	biotin carboxylase activity
NLHDIDDJ_01485	COG0038	chloride channel
NLHDIDDJ_01487	COG1309	transcriptional regulator
NLHDIDDJ_01489	COG1063	alcohol dehydrogenase
NLHDIDDJ_01492	COG0439	Biotin carboxylase
NLHDIDDJ_01493	COG2249	NAD(P)H dehydrogenase (quinone) activity
NLHDIDDJ_01494	COG1733	regulation of RNA biosynthetic process
NLHDIDDJ_01496	COG0864	Transcriptional regulator
NLHDIDDJ_01498	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NLHDIDDJ_01499	COG1116	anion transmembrane transporter activity
NLHDIDDJ_01522	COG0590	tRNA wobble adenosine to inosine editing
NLHDIDDJ_01523	COG2807	transmembrane transport
NLHDIDDJ_01528	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
NLHDIDDJ_01530	COG0789	Transcriptional regulator
NLHDIDDJ_01533	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NLHDIDDJ_01537	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NLHDIDDJ_01542	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_01543	COG0531	amino acid
NLHDIDDJ_01544	COG1760	l-serine dehydratase
NLHDIDDJ_01545	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_01545	COG2030	dehydratase
NLHDIDDJ_01546	COG3396	Phenylacetate-CoA oxygenase
NLHDIDDJ_01547	COG3460	Phenylacetate-CoA oxygenase
NLHDIDDJ_01548	COG3396	Phenylacetate-CoA oxygenase
NLHDIDDJ_01549	COG2151	metal-sulfur cluster biosynthetic enzyme
NLHDIDDJ_01550	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NLHDIDDJ_01551	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_01552	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_01553	COG1250	3-hydroxyacyl-CoA dehydrogenase
NLHDIDDJ_01554	COG0183	Belongs to the thiolase family
NLHDIDDJ_01555	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
NLHDIDDJ_01556	COG3327	negative regulation of DNA-templated transcription, initiation
NLHDIDDJ_01558	COG2050	protein possibly involved in aromatic compounds catabolism
NLHDIDDJ_01568	COG1804	L-carnitine dehydratase bile acid-inducible protein F
NLHDIDDJ_01569	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NLHDIDDJ_01570	COG2271	Major facilitator Superfamily
NLHDIDDJ_01571	COG0753	catalase activity
NLHDIDDJ_01572	COG3038	cytochrome b561
NLHDIDDJ_01576	COG2267	carboxylic ester hydrolase activity
NLHDIDDJ_01577	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NLHDIDDJ_01578	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NLHDIDDJ_01579	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_01580	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
NLHDIDDJ_01582	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_01583	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NLHDIDDJ_01584	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01586	COG1414	Transcriptional regulator
NLHDIDDJ_01587	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NLHDIDDJ_01589	COG1840	ABC-type Fe3 transport system, periplasmic component
NLHDIDDJ_01590	COG3842	ATPase activity
NLHDIDDJ_01593	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
NLHDIDDJ_01594	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NLHDIDDJ_01595	COG2814	Major facilitator Superfamily
NLHDIDDJ_01596	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_01597	COG1804	L-carnitine dehydratase bile acid-inducible protein F
NLHDIDDJ_01599	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_01602	COG2814	Major facilitator Superfamily
NLHDIDDJ_01604	COG0183	Belongs to the thiolase family
NLHDIDDJ_01605	COG1250	3-hydroxyacyl-CoA dehydrogenase
NLHDIDDJ_01606	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_01607	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_01608	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_01609	COG2814	Major facilitator Superfamily
NLHDIDDJ_01610	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
NLHDIDDJ_01611	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NLHDIDDJ_01613	COG2814	Major facilitator Superfamily
NLHDIDDJ_01615	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_01618	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01620	COG4770	biotin carboxylase activity
NLHDIDDJ_01621	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_01622	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NLHDIDDJ_01623	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_01624	COG1309	transcriptional regulator
NLHDIDDJ_01625	COG0318	PFAM AMP-dependent synthetase and ligase
NLHDIDDJ_01629	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01640	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_01644	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NLHDIDDJ_01648	COG0784	Response regulator, receiver
NLHDIDDJ_01648	COG2205	protein histidine kinase activity
NLHDIDDJ_01651	COG0765	amino acid transport
NLHDIDDJ_01652	COG0765	amino acid transport
NLHDIDDJ_01653	COG1126	abc transporter atp-binding protein
NLHDIDDJ_01654	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NLHDIDDJ_01655	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NLHDIDDJ_01657	COG1280	lysine exporter protein (LysE YggA)
NLHDIDDJ_01658	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NLHDIDDJ_01659	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NLHDIDDJ_01660	COG1045	serine acetyltransferase
NLHDIDDJ_01663	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01667	COG0625	glutathione transferase activity
NLHDIDDJ_01668	COG0625	glutathione transferase activity
NLHDIDDJ_01669	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01671	COG1346	cytolysis
NLHDIDDJ_01675	COG2814	Major facilitator Superfamily
NLHDIDDJ_01677	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01679	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
NLHDIDDJ_01680	COG3052	prosthetic group binding
NLHDIDDJ_01684	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
NLHDIDDJ_01688	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NLHDIDDJ_01690	COG1294	oxidase, subunit
NLHDIDDJ_01691	COG1271	oxidase subunit
NLHDIDDJ_01695	COG2271	Major facilitator Superfamily
NLHDIDDJ_01700	COG4521	taurine ABC transporter
NLHDIDDJ_01701	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
NLHDIDDJ_01702	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NLHDIDDJ_01703	COG2175	clavaminate synthase activity
NLHDIDDJ_01705	COG1953	Uracil, thiamine, allantoin
NLHDIDDJ_01707	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01709	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
NLHDIDDJ_01712	COG0640	Transcriptional regulator
NLHDIDDJ_01713	COG0798	PFAM Bile acid sodium symporter
NLHDIDDJ_01714	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01717	COG3634	alkyl hydroperoxide reductase activity
NLHDIDDJ_01724	COG1301	dicarboxylic acid transport
NLHDIDDJ_01725	COG0436	Aminotransferase
NLHDIDDJ_01727	COG0386	Belongs to the glutathione peroxidase family
NLHDIDDJ_01735	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
NLHDIDDJ_01740	COG0012	GTP binding
NLHDIDDJ_01741	COG2011	ABC-type metal ion transport system permease component
NLHDIDDJ_01742	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NLHDIDDJ_01744	COG1464	Belongs to the NlpA lipoprotein family
NLHDIDDJ_01750	COG0765	amino acid transport
NLHDIDDJ_01751	COG0765	amino acid transport
NLHDIDDJ_01752	COG1126	abc transporter atp-binding protein
NLHDIDDJ_01754	COG1522	sequence-specific DNA binding
NLHDIDDJ_01757	COG1309	transcriptional regulator
NLHDIDDJ_01762	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01764	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
NLHDIDDJ_01766	COG0697	spore germination
NLHDIDDJ_01771	COG3121	Chaperone
NLHDIDDJ_01772	COG3539	Fimbrial protein
NLHDIDDJ_01777	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NLHDIDDJ_01777	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NLHDIDDJ_01787	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NLHDIDDJ_01789	COG2353	YceI-like domain
NLHDIDDJ_01791	COG3698	Phosphodiester glycosidase
NLHDIDDJ_01794	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
NLHDIDDJ_01795	COG0506	proline dehydrogenase activity
NLHDIDDJ_01795	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NLHDIDDJ_01795	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NLHDIDDJ_01797	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NLHDIDDJ_01798	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
NLHDIDDJ_01802	COG1132	(ABC) transporter
NLHDIDDJ_01803	COG3122	Protein conserved in bacteria
NLHDIDDJ_01804	COG3619	membrane
NLHDIDDJ_01806	COG0640	Transcriptional regulator
NLHDIDDJ_01808	COG2850	peptidyl-arginine hydroxylation
NLHDIDDJ_01809	COG0424	maF-like protein
NLHDIDDJ_01813	COG0191	fructose-bisphosphate aldolase activity
NLHDIDDJ_01814	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NLHDIDDJ_01817	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NLHDIDDJ_01819	COG1192	Involved in chromosome partitioning
NLHDIDDJ_01820	COG1475	DNA binding
NLHDIDDJ_01821	COG0811	peptide transport
NLHDIDDJ_01823	COG1132	(ABC) transporter
NLHDIDDJ_01824	COG1663	tetraacyldisaccharide 4'-kinase activity
NLHDIDDJ_01828	COG0084	hydrolase, TatD family'
NLHDIDDJ_01841	COG0776	regulation of translation
NLHDIDDJ_01847	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NLHDIDDJ_01848	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NLHDIDDJ_01855	COG4166	transmembrane transport
NLHDIDDJ_01857	COG0339	signal peptide processing
NLHDIDDJ_01859	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NLHDIDDJ_01866	COG0702	epimerase
NLHDIDDJ_01867	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NLHDIDDJ_01871	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NLHDIDDJ_01877	COG0316	Belongs to the HesB IscA family
NLHDIDDJ_01878	COG0822	iron-sulfur transferase activity
NLHDIDDJ_01883	COG0776	regulation of translation
NLHDIDDJ_01884	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NLHDIDDJ_01885	COG2207	Transcriptional regulator
NLHDIDDJ_01886	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NLHDIDDJ_01887	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_01888	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_01891	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
NLHDIDDJ_01894	COG2814	Major facilitator Superfamily
NLHDIDDJ_01895	COG4264	IucA IucC family
NLHDIDDJ_01896	COG4264	IucA IucC family
NLHDIDDJ_01898	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NLHDIDDJ_01904	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NLHDIDDJ_01908	COG0406	alpha-ribazole phosphatase activity
NLHDIDDJ_01911	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NLHDIDDJ_01912	COG0730	response to heat
NLHDIDDJ_01916	COG4773	Receptor
NLHDIDDJ_01917	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NLHDIDDJ_01920	COG1131	(ABC) transporter
NLHDIDDJ_01921	COG0842	Transport permease protein
NLHDIDDJ_01922	COG0842	Transport permease protein
NLHDIDDJ_01933	COG2226	methyltransferase
NLHDIDDJ_01938	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
NLHDIDDJ_01945	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NLHDIDDJ_01947	COG0133	tryptophan synthase activity
NLHDIDDJ_01950	COG3706	GGDEF domain
NLHDIDDJ_01953	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NLHDIDDJ_01954	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
NLHDIDDJ_01955	COG0022	dehydrogenase e1 component
NLHDIDDJ_01956	COG0508	dehydrogenase complex catalyzes the overall conversion of
NLHDIDDJ_01957	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NLHDIDDJ_01959	COG1063	alcohol dehydrogenase
NLHDIDDJ_01960	COG3781	membrane
NLHDIDDJ_01962	COG3453	Protein conserved in bacteria
NLHDIDDJ_01962	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NLHDIDDJ_01964	COG0730	response to heat
NLHDIDDJ_01967	COG2207	Transcriptional regulator
NLHDIDDJ_01967	COG3708	Transcriptional regulator
NLHDIDDJ_01968	COG1733	regulation of RNA biosynthetic process
NLHDIDDJ_01969	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
NLHDIDDJ_01971	COG2188	Transcriptional regulator
NLHDIDDJ_01974	COG4521	taurine ABC transporter
NLHDIDDJ_01975	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NLHDIDDJ_01979	COG0477	Major facilitator Superfamily
NLHDIDDJ_01981	COG1027	Aspartate ammonia-lyase
NLHDIDDJ_01984	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01985	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01986	COG0183	Belongs to the thiolase family
NLHDIDDJ_01987	COG2031	fatty acid transporter
NLHDIDDJ_01990	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_01996	COG2610	gluconate transmembrane transporter activity
NLHDIDDJ_01997	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_01998	COG2207	Transcriptional regulator
NLHDIDDJ_02001	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_02003	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NLHDIDDJ_02006	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NLHDIDDJ_02006	COG0543	2 iron, 2 sulfur cluster binding
NLHDIDDJ_02007	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
NLHDIDDJ_02008	COG4638	Rieske (2fe-2S)
NLHDIDDJ_02010	COG0725	ABC transporter, periplasmic molybdate-binding protein
NLHDIDDJ_02011	COG4149	molybdate abc transporter
NLHDIDDJ_02012	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
NLHDIDDJ_02013	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_02014	COG1535	isochorismatase
NLHDIDDJ_02014	COG3433	isochorismatase activity
NLHDIDDJ_02026	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NLHDIDDJ_02032	COG0753	catalase activity
NLHDIDDJ_02034	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
NLHDIDDJ_02039	COG3539	Fimbrial protein
NLHDIDDJ_02043	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NLHDIDDJ_02047	COG2072	flavoprotein involved in K transport
NLHDIDDJ_02050	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NLHDIDDJ_02051	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NLHDIDDJ_02052	COG0745	RESPONSE REGULATOR receiver
NLHDIDDJ_02053	COG2205	protein histidine kinase activity
NLHDIDDJ_02056	COG2207	Transcriptional regulator
NLHDIDDJ_02058	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_02061	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
NLHDIDDJ_02065	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NLHDIDDJ_02071	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NLHDIDDJ_02081	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NLHDIDDJ_02085	COG1120	ATPase activity
NLHDIDDJ_02086	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NLHDIDDJ_02088	COG1064	alcohol dehydrogenase
NLHDIDDJ_02089	COG2207	Transcriptional regulator
NLHDIDDJ_02090	COG2084	Dehydrogenase
NLHDIDDJ_02092	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NLHDIDDJ_02093	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02095	COG0129	dihydroxy-acid dehydratase activity
NLHDIDDJ_02096	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_02099	COG1566	PFAM secretion protein HlyD family protein
NLHDIDDJ_02102	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02105	COG2188	Transcriptional regulator
NLHDIDDJ_02118	COG0318	PFAM AMP-dependent synthetase and ligase
NLHDIDDJ_02120	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_02122	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_02123	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_02124	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_02125	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02126	COG1309	transcriptional regulator
NLHDIDDJ_02131	COG0789	Transcriptional regulator
NLHDIDDJ_02135	COG0446	pyridine nucleotide-disulphide oxidoreductase
NLHDIDDJ_02135	COG1902	pentaerythritol trinitrate reductase activity
NLHDIDDJ_02138	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_02142	COG2186	Transcriptional regulator
NLHDIDDJ_02144	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02145	COG4948	Mandelate Racemase Muconate Lactonizing
NLHDIDDJ_02146	COG4829	muconolactone delta-isomerase
NLHDIDDJ_02148	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
NLHDIDDJ_02149	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NLHDIDDJ_02150	COG0183	Belongs to the thiolase family
NLHDIDDJ_02151	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NLHDIDDJ_02153	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_02155	COG3733	amine oxidase
NLHDIDDJ_02157	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NLHDIDDJ_02159	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_02161	COG4638	Rieske (2fe-2S)
NLHDIDDJ_02165	COG0154	amidase activity
NLHDIDDJ_02167	COG2814	Major facilitator Superfamily
NLHDIDDJ_02172	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_02173	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02174	COG1414	Transcriptional regulator
NLHDIDDJ_02177	COG2391	methyltransferase activity
NLHDIDDJ_02179	COG4993	Dehydrogenase
NLHDIDDJ_02180	COG3659	wide pore channel activity
NLHDIDDJ_02181	COG3420	alginic acid biosynthetic process
NLHDIDDJ_02182	COG0710	3-dehydroquinate dehydratase activity
NLHDIDDJ_02183	COG3485	protocatechuate 3,4-dioxygenase
NLHDIDDJ_02184	COG3485	protocatechuate 3,4-dioxygenase
NLHDIDDJ_02185	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NLHDIDDJ_02186	COG2271	Major facilitator Superfamily
NLHDIDDJ_02187	COG0596	Alpha beta hydrolase
NLHDIDDJ_02188	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
NLHDIDDJ_02189	COG0183	Belongs to the thiolase family
NLHDIDDJ_02190	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NLHDIDDJ_02191	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
NLHDIDDJ_02193	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NLHDIDDJ_02194	COG2323	membrane
NLHDIDDJ_02203	COG0446	pyridine nucleotide-disulphide oxidoreductase
NLHDIDDJ_02203	COG1902	pentaerythritol trinitrate reductase activity
NLHDIDDJ_02208	COG0542	response to heat
NLHDIDDJ_02209	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
NLHDIDDJ_02215	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
NLHDIDDJ_02216	COG0569	domain protein
NLHDIDDJ_02217	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NLHDIDDJ_02220	COG4774	siderophore transport
NLHDIDDJ_02221	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NLHDIDDJ_02223	COG1585	Membrane protein implicated in regulation of membrane protease activity
NLHDIDDJ_02226	COG1294	oxidase, subunit
NLHDIDDJ_02227	COG4890	Cyd operon protein YbgT
NLHDIDDJ_02229	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
NLHDIDDJ_02231	COG0552	protein localization to endoplasmic reticulum
NLHDIDDJ_02236	COG0517	IMP dehydrogenase activity
NLHDIDDJ_02236	COG0516	GMP reductase activity
NLHDIDDJ_02237	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NLHDIDDJ_02238	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NLHDIDDJ_02240	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02241	COG0024	Methionine aminopeptidase
NLHDIDDJ_02247	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NLHDIDDJ_02247	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NLHDIDDJ_02248	COG1105	Belongs to the carbohydrate kinase PfkB family
NLHDIDDJ_02249	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NLHDIDDJ_02249	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NLHDIDDJ_02249	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
NLHDIDDJ_02252	COG3300	MHYT domain
NLHDIDDJ_02252	COG5001	Diguanylate cyclase
NLHDIDDJ_02255	COG2135	peptidase activity
NLHDIDDJ_02256	COG0659	secondary active sulfate transmembrane transporter activity
NLHDIDDJ_02259	COG1113	amino acid transport
NLHDIDDJ_02261	COG1522	sequence-specific DNA binding
NLHDIDDJ_02266	COG1011	Hydrolase
NLHDIDDJ_02267	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
NLHDIDDJ_02269	COG2137	regulation of response to DNA damage stimulus
NLHDIDDJ_02271	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NLHDIDDJ_02275	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NLHDIDDJ_02278	COG0575	Belongs to the CDS family
NLHDIDDJ_02279	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NLHDIDDJ_02283	COG3852	Histidine kinase
NLHDIDDJ_02284	COG2204	response regulator
NLHDIDDJ_02295	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NLHDIDDJ_02296	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
NLHDIDDJ_02300	COG0697	spore germination
NLHDIDDJ_02301	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NLHDIDDJ_02303	COG0303	'Molybdopterin
NLHDIDDJ_02304	COG0521	Mo-molybdopterin cofactor biosynthetic process
NLHDIDDJ_02304	COG0315	cyclic pyranopterin monophosphate synthase activity
NLHDIDDJ_02307	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
NLHDIDDJ_02308	COG0243	molybdopterin cofactor binding
NLHDIDDJ_02310	COG0243	molybdopterin cofactor binding
NLHDIDDJ_02311	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NLHDIDDJ_02312	COG2146	nitrite reductase [NAD(P)H] activity
NLHDIDDJ_02312	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NLHDIDDJ_02314	COG0745	RESPONSE REGULATOR receiver
NLHDIDDJ_02315	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NLHDIDDJ_02315	COG1116	anion transmembrane transporter activity
NLHDIDDJ_02318	COG0511	ligase activity, forming carbon-carbon bonds
NLHDIDDJ_02321	COG2814	Major facilitator Superfamily
NLHDIDDJ_02325	COG0069	glutamate synthase activity
NLHDIDDJ_02331	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NLHDIDDJ_02333	COG1454	alcohol dehydrogenase
NLHDIDDJ_02334	COG0824	Thioesterase
NLHDIDDJ_02337	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
NLHDIDDJ_02341	COG2030	dehydratase
NLHDIDDJ_02343	COG0183	Belongs to the thiolase family
NLHDIDDJ_02345	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02346	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NLHDIDDJ_02348	COG1522	sequence-specific DNA binding
NLHDIDDJ_02349	COG3135	benzoate transporter
NLHDIDDJ_02351	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
NLHDIDDJ_02356	COG0589	response to stress
NLHDIDDJ_02357	COG0488	(ABC) transporter
NLHDIDDJ_02361	COG4773	Receptor
NLHDIDDJ_02367	COG0668	transmembrane transport
NLHDIDDJ_02369	COG1309	transcriptional regulator
NLHDIDDJ_02372	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
NLHDIDDJ_02375	COG1605	Chorismate mutase
NLHDIDDJ_02383	COG0308	aminopeptidase N
NLHDIDDJ_02387	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
NLHDIDDJ_02389	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NLHDIDDJ_02390	COG1454	alcohol dehydrogenase
NLHDIDDJ_02394	COG0531	amino acid
NLHDIDDJ_02395	COG4303	Ethanolamine ammonia lyase large subunit
NLHDIDDJ_02396	COG4302	ethanolamine ammonia-lyase activity
NLHDIDDJ_02397	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NLHDIDDJ_02397	COG0519	Catalyzes the synthesis of GMP from XMP
NLHDIDDJ_02398	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NLHDIDDJ_02403	COG0697	spore germination
NLHDIDDJ_02405	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
NLHDIDDJ_02406	COG0802	atpase or kinase
NLHDIDDJ_02410	COG1187	pseudouridine synthase activity
NLHDIDDJ_02413	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02416	COG2814	Major facilitator Superfamily
NLHDIDDJ_02417	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NLHDIDDJ_02439	COG3646	Phage regulatory protein
NLHDIDDJ_02488	COG0729	surface antigen
NLHDIDDJ_02492	COG0174	glutamine synthetase
NLHDIDDJ_02493	COG0745	RESPONSE REGULATOR receiver
NLHDIDDJ_02494	COG2205	protein histidine kinase activity
NLHDIDDJ_02496	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
NLHDIDDJ_02497	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
NLHDIDDJ_02502	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NLHDIDDJ_02503	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NLHDIDDJ_02504	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_02507	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NLHDIDDJ_02508	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NLHDIDDJ_02512	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02515	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NLHDIDDJ_02517	COG3658	cytochrome
NLHDIDDJ_02518	COG1215	transferase activity, transferring glycosyl groups
NLHDIDDJ_02519	COG1649	PFAM Uncharacterised BCR, COG1649
NLHDIDDJ_02519	COG0726	polysaccharide deacetylase
NLHDIDDJ_02524	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NLHDIDDJ_02525	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NLHDIDDJ_02527	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
NLHDIDDJ_02532	COG0305	Participates in initiation and elongation during chromosome replication
NLHDIDDJ_02533	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NLHDIDDJ_02535	COG1305	Transglutaminase-like
NLHDIDDJ_02537	COG2308	Evidence 4 Homologs of previously reported genes of
NLHDIDDJ_02543	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
NLHDIDDJ_02544	COG0138	bifunctional purine biosynthesis protein purh
NLHDIDDJ_02545	COG0151	Belongs to the GarS family
NLHDIDDJ_02546	COG1464	Belongs to the NlpA lipoprotein family
NLHDIDDJ_02547	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NLHDIDDJ_02548	COG2011	ABC-type metal ion transport system permease component
NLHDIDDJ_02549	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NLHDIDDJ_02551	COG1301	dicarboxylic acid transport
NLHDIDDJ_02557	COG1794	racemase activity, acting on amino acids and derivatives
NLHDIDDJ_02561	COG0745	RESPONSE REGULATOR receiver
NLHDIDDJ_02562	COG0642	Histidine kinase
NLHDIDDJ_02563	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NLHDIDDJ_02565	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NLHDIDDJ_02573	COG2351	hydroxyisourate hydrolase activity
NLHDIDDJ_02575	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NLHDIDDJ_02575	COG3008	intermembrane lipid transfer
NLHDIDDJ_02576	COG2995	paraquat-inducible protein a
NLHDIDDJ_02580	COG0477	Major facilitator Superfamily
NLHDIDDJ_02590	COG2186	Transcriptional regulator
NLHDIDDJ_02592	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NLHDIDDJ_02592	COG0475	glutathione-regulated potassium exporter activity
NLHDIDDJ_02593	COG1609	Transcriptional regulator
NLHDIDDJ_02594	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NLHDIDDJ_02595	COG2610	gluconate transmembrane transporter activity
NLHDIDDJ_02597	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_02599	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02601	COG0786	glutamate:sodium symporter activity
NLHDIDDJ_02602	COG3243	poly(R)-hydroxyalkanoic acid synthase
NLHDIDDJ_02607	COG3111	PFAM Bacterial OB fold (BOF) protein
NLHDIDDJ_02609	COG2226	methyltransferase
NLHDIDDJ_02627	COG1610	YqeY-like protein
NLHDIDDJ_02628	COG4783	chaperone-mediated protein folding
NLHDIDDJ_02633	COG1286	toxin biosynthetic process
NLHDIDDJ_02639	COG0778	Nitroreductase
NLHDIDDJ_02641	COG0513	Belongs to the DEAD box helicase family
NLHDIDDJ_02645	COG2363	Small membrane protein
NLHDIDDJ_02653	COG1234	tRNA 3'-trailer cleavage
NLHDIDDJ_02654	COG1690	Belongs to the RtcB family
NLHDIDDJ_02658	COG2195	Cleaves the N-terminal amino acid of tripeptides
NLHDIDDJ_02660	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
NLHDIDDJ_02662	COG2819	hydrolase of the alpha beta superfamily
NLHDIDDJ_02663	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_02664	COG1301	dicarboxylic acid transport
NLHDIDDJ_02665	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NLHDIDDJ_02666	COG3139	Protein of unknown function (DUF1315)
NLHDIDDJ_02667	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NLHDIDDJ_02668	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NLHDIDDJ_02670	COG0494	nUDIX hydrolase
NLHDIDDJ_02672	COG0642	Histidine kinase
NLHDIDDJ_02675	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NLHDIDDJ_02677	COG1720	tRNA m6t6A37 methyltransferase activity
NLHDIDDJ_02680	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NLHDIDDJ_02681	COG0826	peptidase U32
NLHDIDDJ_02682	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NLHDIDDJ_02684	COG4598	ABC transporter
NLHDIDDJ_02685	COG4160	amino acid transport
NLHDIDDJ_02686	COG4215	(ABC) transporter
NLHDIDDJ_02689	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NLHDIDDJ_02698	COG1131	(ABC) transporter
NLHDIDDJ_02699	COG0842	Transport permease protein
NLHDIDDJ_02702	COG0772	Belongs to the SEDS family
NLHDIDDJ_02703	COG2951	lytic endotransglycosylase activity
NLHDIDDJ_02708	COG2207	Transcriptional regulator
NLHDIDDJ_02711	COG0052	Belongs to the universal ribosomal protein uS2 family
NLHDIDDJ_02712	COG0024	Methionine aminopeptidase
NLHDIDDJ_02714	COG2223	nitrite transmembrane transporter activity
NLHDIDDJ_02717	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NLHDIDDJ_02718	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NLHDIDDJ_02719	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_02722	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
NLHDIDDJ_02723	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
NLHDIDDJ_02724	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NLHDIDDJ_02728	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NLHDIDDJ_02729	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
NLHDIDDJ_02730	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NLHDIDDJ_02737	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
NLHDIDDJ_02739	COG0174	glutamine synthetase
NLHDIDDJ_02742	COG0512	Glutamine amidotransferase of anthranilate synthase
NLHDIDDJ_02743	COG0308	aminopeptidase N
NLHDIDDJ_02749	COG1529	Aldehyde oxidase and xanthine dehydrogenase
NLHDIDDJ_02751	COG0302	gtp cyclohydrolase
NLHDIDDJ_02755	COG3739	integral membrane protein
NLHDIDDJ_02760	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
NLHDIDDJ_02761	COG1132	(ABC) transporter
NLHDIDDJ_02762	COG1132	(ABC) transporter
NLHDIDDJ_02765	COG1535	isochorismatase
NLHDIDDJ_02765	COG3433	isochorismatase activity
NLHDIDDJ_02766	COG1021	2,3-dihydroxybenzoate-AMP ligase
NLHDIDDJ_02767	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NLHDIDDJ_02769	COG4774	siderophore transport
NLHDIDDJ_02770	COG4607	ABC-type enterochelin transport system periplasmic component
NLHDIDDJ_02771	COG4604	ABC transporter, ATP-binding protein
NLHDIDDJ_02772	COG4605	iron ion homeostasis
NLHDIDDJ_02773	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NLHDIDDJ_02775	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NLHDIDDJ_02778	COG2964	Protein conserved in bacteria
NLHDIDDJ_02780	COG1741	Belongs to the pirin family
NLHDIDDJ_02787	COG2879	small protein
NLHDIDDJ_02788	COG1966	Carbon starvation protein
NLHDIDDJ_02797	COG1067	ATP-dependent peptidase activity
NLHDIDDJ_02798	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02803	COG1686	Belongs to the peptidase S11 family
NLHDIDDJ_02804	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NLHDIDDJ_02811	COG0616	signal peptide processing
NLHDIDDJ_02812	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
NLHDIDDJ_02814	COG0573	inorganic phosphate transmembrane transporter activity
NLHDIDDJ_02815	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NLHDIDDJ_02816	COG1113	amino acid transport
NLHDIDDJ_02817	COG3961	Belongs to the TPP enzyme family
NLHDIDDJ_02818	COG1522	sequence-specific DNA binding
NLHDIDDJ_02820	COG0076	glutamate decarboxylase activity
NLHDIDDJ_02821	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NLHDIDDJ_02824	COG2249	NAD(P)H dehydrogenase (quinone) activity
NLHDIDDJ_02826	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NLHDIDDJ_02833	COG0352	thiamine-phosphate diphosphorylase activity
NLHDIDDJ_02838	COG0612	Peptidase, M16
NLHDIDDJ_02840	COG1823	symporter activity
NLHDIDDJ_02841	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02842	COG0477	Major facilitator Superfamily
NLHDIDDJ_02846	COG0582	viral genome integration into host DNA
NLHDIDDJ_02898	COG1187	pseudouridine synthase activity
NLHDIDDJ_02901	COG1686	Belongs to the peptidase S11 family
NLHDIDDJ_02902	COG1252	NADH dehydrogenase
NLHDIDDJ_02904	COG0415	Belongs to the DNA photolyase family
NLHDIDDJ_02907	COG1215	transferase activity, transferring glycosyl groups
NLHDIDDJ_02913	COG2070	2-Nitropropane dioxygenase
NLHDIDDJ_02924	COG0556	nucleotide-excision repair
NLHDIDDJ_02928	COG0436	Aminotransferase
NLHDIDDJ_02930	COG0443	Heat shock 70 kDa protein
NLHDIDDJ_02935	COG4221	oxidoreductase activity
NLHDIDDJ_02937	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
NLHDIDDJ_02938	COG1381	Involved in DNA repair and RecF pathway recombination
NLHDIDDJ_02940	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
NLHDIDDJ_02943	COG0681	Belongs to the peptidase S26 family
NLHDIDDJ_02945	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NLHDIDDJ_02947	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NLHDIDDJ_02951	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NLHDIDDJ_02952	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NLHDIDDJ_02953	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NLHDIDDJ_02955	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
NLHDIDDJ_02956	COG4208	sulfate ABC transporter
NLHDIDDJ_02957	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
NLHDIDDJ_02958	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_02959	COG4625	pathogenesis
NLHDIDDJ_02962	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NLHDIDDJ_02965	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NLHDIDDJ_02967	COG1051	belongs to the nudix hydrolase family
NLHDIDDJ_02967	COG1056	cytidyltransferase-related domain
NLHDIDDJ_02968	COG1024	Enoyl-CoA hydratase
NLHDIDDJ_02970	COG2814	Major facilitator Superfamily
NLHDIDDJ_02971	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
NLHDIDDJ_02971	COG0047	phosphoribosylformylglycinamidine synthase activity
NLHDIDDJ_02975	COG1473	amidohydrolase
NLHDIDDJ_02976	COG0824	Thioesterase
NLHDIDDJ_02980	COG0823	Involved in the tonB-independent uptake of proteins
NLHDIDDJ_02984	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NLHDIDDJ_02991	COG0628	permease
NLHDIDDJ_02993	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
NLHDIDDJ_02994	COG0596	Alpha beta hydrolase
NLHDIDDJ_02995	COG0616	signal peptide processing
NLHDIDDJ_02995	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NLHDIDDJ_02997	COG0658	competence protein
NLHDIDDJ_02997	COG2333	competence protein COMEC
NLHDIDDJ_02998	COG1136	(ABC) transporter
NLHDIDDJ_02999	COG4591	ABC-type transport system involved in lipoprotein release permease component
NLHDIDDJ_03006	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NLHDIDDJ_03010	COG0463	Glycosyl transferase, family 2
NLHDIDDJ_03016	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NLHDIDDJ_03017	COG1280	lysine exporter protein (LysE YggA)
NLHDIDDJ_03018	COG2267	carboxylic ester hydrolase activity
NLHDIDDJ_03021	COG0019	diaminopimelate decarboxylase activity
NLHDIDDJ_03023	COG1113	amino acid transport
NLHDIDDJ_03026	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
NLHDIDDJ_03028	COG3339	Conserved Protein
NLHDIDDJ_03029	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NLHDIDDJ_03030	COG0243	molybdopterin cofactor binding
NLHDIDDJ_03031	COG1929	Belongs to the glycerate kinase type-1 family
NLHDIDDJ_03034	COG0778	Nitroreductase
NLHDIDDJ_03040	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NLHDIDDJ_03043	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NLHDIDDJ_03047	COG0741	lytic transglycosylase activity
NLHDIDDJ_03051	COG0584	glycerophosphoryl diester phosphodiesterase
NLHDIDDJ_03056	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
NLHDIDDJ_03057	COG1597	lipid kinase activity
NLHDIDDJ_03060	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
NLHDIDDJ_03061	COG0477	Major facilitator Superfamily
NLHDIDDJ_03071	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NLHDIDDJ_03072	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NLHDIDDJ_03077	COG0505	Belongs to the CarA family
NLHDIDDJ_03081	COG0589	response to stress
NLHDIDDJ_03084	COG2843	Capsule synthesis protein
NLHDIDDJ_03088	COG2321	neutral zinc metallopeptidase
NLHDIDDJ_03089	COG2354	Protein conserved in bacteria
NLHDIDDJ_03093	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NLHDIDDJ_03096	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NLHDIDDJ_03097	COG1053	succinate dehydrogenase
NLHDIDDJ_03098	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NLHDIDDJ_03099	COG2009	succinate dehydrogenase
NLHDIDDJ_03107	COG2921	Belongs to the UPF0250 family
NLHDIDDJ_03108	COG0321	lipoyl(octanoyl) transferase activity
NLHDIDDJ_03111	COG0531	amino acid
NLHDIDDJ_03113	COG1733	regulation of RNA biosynthetic process
NLHDIDDJ_03114	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
NLHDIDDJ_03115	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NLHDIDDJ_03115	COG1648	precorrin-2 dehydrogenase activity
NLHDIDDJ_03118	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
NLHDIDDJ_03123	COG0671	phosphoesterase, PA-phosphatase related
NLHDIDDJ_03124	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NLHDIDDJ_03126	COG1538	Outer membrane efflux protein
NLHDIDDJ_03127	COG0393	Putative heavy-metal-binding
NLHDIDDJ_03128	COG0393	Putative heavy-metal-binding
NLHDIDDJ_03130	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_03132	COG0525	valine-tRNA ligase activity
NLHDIDDJ_03136	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_03137	COG0004	ammonium transporteR
NLHDIDDJ_03139	COG0642	Histidine kinase
NLHDIDDJ_03140	COG0745	RESPONSE REGULATOR receiver
NLHDIDDJ_03141	COG2194	sulfuric ester hydrolase activity
NLHDIDDJ_03145	COG1752	Esterase of the alpha-beta hydrolase superfamily
NLHDIDDJ_03148	COG2315	Protein conserved in bacteria
NLHDIDDJ_03149	COG0142	geranyltranstransferase activity
NLHDIDDJ_03150	COG2828	Protein conserved in bacteria
NLHDIDDJ_03151	COG1113	amino acid transport
NLHDIDDJ_03155	COG2207	Transcriptional regulator
NLHDIDDJ_03160	COG2249	NAD(P)H dehydrogenase (quinone) activity
NLHDIDDJ_03162	COG0560	Phosphoserine phosphatase
NLHDIDDJ_03164	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NLHDIDDJ_03166	COG1530	ribonuclease E activity
NLHDIDDJ_03167	COG0424	maF-like protein
NLHDIDDJ_03168	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
NLHDIDDJ_03169	COG1792	Involved in formation and maintenance of cell shape
NLHDIDDJ_03170	COG1077	Cell shape determining protein MreB Mrl
NLHDIDDJ_03171	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
NLHDIDDJ_03173	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
NLHDIDDJ_03178	COG3590	peptidase
NLHDIDDJ_03179	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
NLHDIDDJ_03180	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
NLHDIDDJ_03181	COG1752	Esterase of the alpha-beta hydrolase superfamily
NLHDIDDJ_03182	COG1115	amino acid carrier protein
NLHDIDDJ_03185	COG2814	Major facilitator Superfamily
NLHDIDDJ_03186	COG1289	transmembrane transporter activity
NLHDIDDJ_03188	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NLHDIDDJ_03196	COG1376	ErfK ybiS ycfS ynhG family protein
NLHDIDDJ_03197	COG2832	Protein of unknown function (DUF454)
NLHDIDDJ_03199	COG5510	response to toxic substance
NLHDIDDJ_03203	COG0840	transmembrane signaling receptor activity
NLHDIDDJ_03211	COG3422	double-strand break repair
NLHDIDDJ_03212	COG2824	Alkylphosphonate utilization operon protein PhnA
NLHDIDDJ_03213	COG3189	MarR family transcriptional regulator
NLHDIDDJ_03215	COG0354	folic acid binding
NLHDIDDJ_03216	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NLHDIDDJ_03218	COG0679	Auxin Efflux Carrier
NLHDIDDJ_03219	COG1902	pentaerythritol trinitrate reductase activity
NLHDIDDJ_03220	COG4772	TonB-dependent receptor
NLHDIDDJ_03221	COG2094	Belongs to the DNA glycosylase MPG family
NLHDIDDJ_03226	COG1217	gtp-binding protein TYPA
NLHDIDDJ_03227	COG2233	PERMEase
NLHDIDDJ_03229	COG0833	amino acid
NLHDIDDJ_03230	COG1690	Belongs to the RtcB family
NLHDIDDJ_03232	COG2885	chlorophyll binding
NLHDIDDJ_03232	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
NLHDIDDJ_03234	COG0183	Belongs to the thiolase family
NLHDIDDJ_03238	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NLHDIDDJ_03242	COG2207	Transcriptional regulator
NLHDIDDJ_03243	COG0183	Belongs to the thiolase family
NLHDIDDJ_03247	COG2153	protein acetylation
NLHDIDDJ_03249	COG1272	protein, Hemolysin III
NLHDIDDJ_03250	COG0477	Major facilitator Superfamily
NLHDIDDJ_03253	COG0450	alkyl hydroperoxide reductase
NLHDIDDJ_03257	COG0285	dihydrofolate synthase activity
NLHDIDDJ_03266	COG4206	TonB-dependent receptor
NLHDIDDJ_03267	COG2096	Adenosyltransferase
NLHDIDDJ_03268	COG0584	glycerophosphoryl diester phosphodiesterase
NLHDIDDJ_03271	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
NLHDIDDJ_03272	COG0745	RESPONSE REGULATOR receiver
NLHDIDDJ_03273	COG2205	protein histidine kinase activity
NLHDIDDJ_03275	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_03276	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_03286	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
NLHDIDDJ_03289	COG0438	transferase activity, transferring glycosyl groups
NLHDIDDJ_03290	COG0463	Glycosyl transferase, family 2
NLHDIDDJ_03291	COG0726	polysaccharide deacetylase
NLHDIDDJ_03295	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
NLHDIDDJ_03296	COG2205	protein histidine kinase activity
NLHDIDDJ_03302	COG1862	Preprotein translocase
NLHDIDDJ_03304	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NLHDIDDJ_03305	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NLHDIDDJ_03307	COG3781	membrane
NLHDIDDJ_03308	COG0613	PHP domain protein
NLHDIDDJ_03310	COG2350	Protein conserved in bacteria
NLHDIDDJ_03316	COG1607	acyl-coa hydrolase
NLHDIDDJ_03328	COG2199	diguanylate cyclase activity
NLHDIDDJ_03330	COG1408	metallophosphoesterase
NLHDIDDJ_03331	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NLHDIDDJ_03333	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NLHDIDDJ_03337	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NLHDIDDJ_03338	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NLHDIDDJ_03341	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
NLHDIDDJ_03343	COG2969	positive regulation of protein catabolic process
NLHDIDDJ_03347	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_03348	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NLHDIDDJ_03351	COG1309	transcriptional regulator
NLHDIDDJ_03352	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_03361	COG1183	phosphatidylcholine synthase activity
NLHDIDDJ_03362	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NLHDIDDJ_03368	COG0739	heme binding
NLHDIDDJ_03368	COG1196	nuclear chromosome segregation
NLHDIDDJ_03368	COG0741	lytic transglycosylase activity
NLHDIDDJ_03370	COG1702	phosphate starvation-inducible protein PhoH
NLHDIDDJ_03377	COG1295	ribonuclease BN
NLHDIDDJ_03378	COG0697	spore germination
NLHDIDDJ_03379	COG2169	Transcriptional regulator
NLHDIDDJ_03380	COG0179	Fumarylacetoacetate (FAA) hydrolase
NLHDIDDJ_03389	COG0557	exoribonuclease II activity
NLHDIDDJ_03390	COG0339	signal peptide processing
NLHDIDDJ_03391	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
NLHDIDDJ_03398	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
NLHDIDDJ_03399	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_03430	COG0626	cystathionine gamma-synthase activity
NLHDIDDJ_03431	COG0433	COG0433 Predicted ATPase
NLHDIDDJ_03432	COG1017	nitric oxide dioxygenase activity
NLHDIDDJ_03432	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NLHDIDDJ_03433	COG1959	2 iron, 2 sulfur cluster binding
NLHDIDDJ_03436	COG1301	dicarboxylic acid transport
NLHDIDDJ_03437	COG1946	Acyl-CoA thioesterase
NLHDIDDJ_03441	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
NLHDIDDJ_03442	COG1040	competence protein
NLHDIDDJ_03443	COG0494	nUDIX hydrolase
NLHDIDDJ_03445	COG0598	Magnesium transport protein CorA
NLHDIDDJ_03447	COG2854	intermembrane phospholipid transfer
NLHDIDDJ_03449	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NLHDIDDJ_03450	COG1127	ABC transporter
NLHDIDDJ_03452	COG0513	Belongs to the DEAD box helicase family
NLHDIDDJ_03456	COG0408	coproporphyrinogen oxidase activity
NLHDIDDJ_03459	COG1960	acyl-CoA dehydrogenase activity
NLHDIDDJ_03461	COG1983	PspC domain protein
NLHDIDDJ_03462	COG0517	IMP dehydrogenase activity
NLHDIDDJ_03471	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_03479	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_03481	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NLHDIDDJ_03482	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
NLHDIDDJ_03483	COG0833	amino acid
NLHDIDDJ_03490	COG0628	permease
NLHDIDDJ_03492	COG1289	transmembrane transporter activity
NLHDIDDJ_03495	COG2249	NAD(P)H dehydrogenase (quinone) activity
NLHDIDDJ_03496	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
NLHDIDDJ_03498	COG0277	FAD linked oxidase domain protein
NLHDIDDJ_03499	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NLHDIDDJ_03504	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
NLHDIDDJ_03505	COG5380	lipid catabolic process
NLHDIDDJ_03509	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NLHDIDDJ_03517	COG4969	Belongs to the N-Me-Phe pilin family
NLHDIDDJ_03519	COG0194	GDP metabolic process
NLHDIDDJ_03521	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NLHDIDDJ_03525	COG3307	-O-antigen
NLHDIDDJ_03526	COG4969	Belongs to the N-Me-Phe pilin family
NLHDIDDJ_03528	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
NLHDIDDJ_03529	COG1704	LemA family
NLHDIDDJ_03531	COG0493	'glutamate synthase
NLHDIDDJ_03532	COG0069	glutamate synthase activity
NLHDIDDJ_03532	COG0067	glutamate synthase
NLHDIDDJ_03532	COG0070	glutamate synthase
NLHDIDDJ_03542	COG2226	methyltransferase
NLHDIDDJ_03545	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NLHDIDDJ_03546	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NLHDIDDJ_03555	COG0833	amino acid
NLHDIDDJ_03568	COG0488	(ABC) transporter
NLHDIDDJ_03573	COG4221	oxidoreductase activity
NLHDIDDJ_03574	COG0659	secondary active sulfate transmembrane transporter activity
NLHDIDDJ_03578	COG0427	acetyl-CoA hydrolase
NLHDIDDJ_03584	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
NLHDIDDJ_03590	COG2329	Antibiotic biosynthesis monooxygenase
NLHDIDDJ_03593	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
NLHDIDDJ_03604	COG2207	Transcriptional regulator
NLHDIDDJ_03605	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
NLHDIDDJ_03608	COG2249	NAD(P)H dehydrogenase (quinone) activity
NLHDIDDJ_03609	COG1733	regulation of RNA biosynthetic process
NLHDIDDJ_03614	COG1309	transcriptional regulator
NLHDIDDJ_03616	COG0667	Aldo Keto reductase
NLHDIDDJ_03621	COG1309	transcriptional regulator
NLHDIDDJ_03625	COG0475	glutathione-regulated potassium exporter activity
NLHDIDDJ_03630	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_03631	COG2814	Major facilitator Superfamily
NLHDIDDJ_03639	COG1335	isochorismatase
NLHDIDDJ_03641	COG1012	belongs to the aldehyde dehydrogenase family
NLHDIDDJ_03642	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NLHDIDDJ_03644	COG1113	amino acid transport
NLHDIDDJ_03646	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
NLHDIDDJ_03649	COG2814	Major facilitator Superfamily
NLHDIDDJ_03651	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
NLHDIDDJ_03651	COG0352	thiamine-phosphate diphosphorylase activity
NLHDIDDJ_03651	COG0351	phosphomethylpyrimidine kinase
NLHDIDDJ_03655	COG1309	transcriptional regulator
NLHDIDDJ_03656	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
NLHDIDDJ_03659	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NLHDIDDJ_03661	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NLHDIDDJ_03662	COG3162	membrane
NLHDIDDJ_03663	COG0784	Response regulator, receiver
NLHDIDDJ_03663	COG2198	Histidine kinase
NLHDIDDJ_03663	COG2205	protein histidine kinase activity
NLHDIDDJ_03668	COG1522	sequence-specific DNA binding
NLHDIDDJ_03669	COG1335	isochorismatase
NLHDIDDJ_03670	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NLHDIDDJ_03672	COG0668	transmembrane transport
NLHDIDDJ_03673	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NLHDIDDJ_03674	COG1519	Transferase
NLHDIDDJ_03675	COG1902	pentaerythritol trinitrate reductase activity
NLHDIDDJ_03680	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
NLHDIDDJ_03685	COG0426	domain, Protein
NLHDIDDJ_03685	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NLHDIDDJ_03686	COG4774	siderophore transport
NLHDIDDJ_03687	COG2119	membrane
NLHDIDDJ_03689	COG0508	dehydrogenase complex catalyzes the overall conversion of
NLHDIDDJ_03691	COG4942	peptidase
NLHDIDDJ_03694	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
NLHDIDDJ_03696	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
NLHDIDDJ_03700	COG0189	ligase activity
NLHDIDDJ_03704	COG0708	Exodeoxyribonuclease III
NLHDIDDJ_03705	COG1393	Belongs to the ArsC family
NLHDIDDJ_03708	COG3706	GGDEF domain
NLHDIDDJ_03715	COG2351	hydroxyisourate hydrolase activity
NLHDIDDJ_03716	COG2233	PERMEase
NLHDIDDJ_03718	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NLHDIDDJ_03720	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
NLHDIDDJ_03721	COG1028	Short-chain dehydrogenase reductase Sdr
NLHDIDDJ_03723	COG3150	esterase
NLHDIDDJ_03726	COG1705	Flagellar rod assembly protein muramidase FlgJ
NLHDIDDJ_03726	COG3951	Flagellar rod assembly protein muramidase FlgJ
NLHDIDDJ_03730	COG2918	glutathione biosynthetic process
NLHDIDDJ_03733	COG2733	membrane
NLHDIDDJ_03734	COG0436	Aminotransferase
NLHDIDDJ_03735	COG0534	Mate efflux family protein
NLHDIDDJ_03752	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
NLHDIDDJ_03753	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
NLHDIDDJ_03755	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NLHDIDDJ_03759	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
NLHDIDDJ_03762	COG0010	Belongs to the arginase family
NLHDIDDJ_03768	COG2188	Transcriptional regulator
NLHDIDDJ_03770	COG0523	cobalamin synthesis protein
NLHDIDDJ_03772	COG1113	amino acid transport
NLHDIDDJ_03774	COG0625	glutathione transferase activity
NLHDIDDJ_03778	COG1683	Conserved Protein
NLHDIDDJ_03779	COG0534	Mate efflux family protein
NLHDIDDJ_03780	COG0385	Bile acid
NLHDIDDJ_03781	COG1335	isochorismatase
NLHDIDDJ_03782	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NLHDIDDJ_03786	COG2116	formate transmembrane transporter activity
NLHDIDDJ_03787	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NLHDIDDJ_03788	COG2133	pyrroloquinoline quinone binding
NLHDIDDJ_03789	COG2983	Belongs to the UPF0260 family
NLHDIDDJ_03793	COG1194	a g-specific adenine glycosylase
NLHDIDDJ_03796	COG2818	Glycosylase
NLHDIDDJ_03797	COG1064	alcohol dehydrogenase
NLHDIDDJ_03798	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NLHDIDDJ_03800	COG0583	DNA-binding transcription factor activity
NLHDIDDJ_03801	COG0656	L-ascorbic acid biosynthetic process
NLHDIDDJ_03802	COG2814	Major facilitator Superfamily
NLHDIDDJ_03809	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NLHDIDDJ_03812	COG2233	PERMEase
NLHDIDDJ_03818	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NLHDIDDJ_03820	COG0733	neurotransmitter:sodium symporter activity
NLHDIDDJ_03907	COG4683	PFAM Phage derived protein Gp49-like (DUF891)