locus-tag class description CV094_00005 PF00501 AMP-binding enzyme CV094_00005 PF13193 AMP-binding enzyme C-terminal domain CV094_00010 PF04341 Protein of unknown function, DUF485 CV094_00015 PF00474 Sodium:solute symporter family CV094_00020 PF00107 Zinc-binding dehydrogenase CV094_00020 PF08240 Alcohol dehydrogenase GroES-like domain CV094_00025 PF00171 Aldehyde dehydrogenase family CV094_00035 PF00561 alpha/beta hydrolase fold CV094_00040 PF00199 Catalase CV094_00040 PF06628 Catalase-related immune-responsive CV094_00060 PF07859 alpha/beta hydrolase fold CV094_00065 PF01047 MarR family CV094_00070 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_00070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CV094_00075 PF00106 short chain dehydrogenase CV094_00080 PF01872 RibD C-terminal domain CV094_00085 PF00376 MerR family regulatory protein CV094_00085 PF09278 MerR, DNA binding CV094_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_00105 PF12706 Beta-lactamase superfamily domain CV094_00110 PF00440 Bacterial regulatory proteins, tetR family CV094_00110 PF08359 YsiA-like protein, C-terminal region CV094_00120 PF00857 Isochorismatase family CV094_00125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_00125 PF03466 LysR substrate binding domain CV094_00130 PF07995 Glucose / Sorbosone dehydrogenase CV094_00135 PF02254 TrkA-N domain CV094_00135 PF00999 Sodium/hydrogen exchanger family CV094_00145 PF07687 Peptidase dimerisation domain CV094_00145 PF01546 Peptidase family M20/M25/M40 CV094_00165 PF17287 POTRA domain CV094_00165 PF08479 POTRA domain, ShlB-type CV094_00165 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CV094_00185 PF07690 Major Facilitator Superfamily CV094_00190 PF04909 Amidohydrolase CV094_00205 PF08450 SMP-30/Gluconolactonase/LRE-like region CV094_00215 PF03466 LysR substrate binding domain CV094_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_00235 PF07690 Major Facilitator Superfamily CV094_00240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CV094_00240 PF01842 ACT domain CV094_00240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CV094_00245 PF03737 Aldolase/RraA CV094_00265 PF00529 HlyD membrane-fusion protein of T1SS CV094_00265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV094_00280 PF00171 Aldehyde dehydrogenase family CV094_00285 PF00920 Dehydratase family CV094_00295 PF03466 LysR substrate binding domain CV094_00295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_00300 PF01370 NAD dependent epimerase/dehydratase family CV094_00305 PF07690 Major Facilitator Superfamily CV094_00310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CV094_00310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CV094_00315 PF06719 AraC-type transcriptional regulator N-terminus CV094_00315 PF12833 Helix-turn-helix domain CV094_00330 PF08240 Alcohol dehydrogenase GroES-like domain CV094_00330 PF00107 Zinc-binding dehydrogenase CV094_00345 PF00005 ABC transporter CV094_00365 PF14572 Phosphoribosyl synthetase-associated domain CV094_00365 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CV094_00370 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CV094_00450 PF00196 Bacterial regulatory proteins, luxR family CV094_00455 PF01425 Amidase CV094_00460 PF13533 Biotin-lipoyl like CV094_00465 PF07690 Major Facilitator Superfamily CV094_00490 PF01975 Survival protein SurE CV094_00500 PF13291 ACT domain CV094_00500 PF02824 TGS domain CV094_00500 PF04607 Region found in RelA / SpoT proteins CV094_00555 PF12146 Serine aminopeptidase, S33 CV094_00560 PF12833 Helix-turn-helix domain CV094_00560 PF02311 AraC-like ligand binding domain CV094_00570 PF00512 His Kinase A (phospho-acceptor) domain CV094_00570 PF16527 Two-component sensor protein CpxA, periplasmic domain CV094_00570 PF00672 HAMP domain CV094_00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_00575 PF00486 Transcriptional regulatory protein, C terminal CV094_00575 PF00072 Response regulator receiver domain CV094_00580 PF00529 HlyD membrane-fusion protein of T1SS CV094_00580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV094_00585 PF00873 AcrB/AcrD/AcrF family CV094_00590 PF02321 Outer membrane efflux protein CV094_00595 PF12146 Serine aminopeptidase, S33 CV094_00600 PF00743 Flavin-binding monooxygenase-like CV094_00605 PF01593 Flavin containing amine oxidoreductase CV094_00620 PF01266 FAD dependent oxidoreductase CV094_00640 PF16970 Type-1 fimbrial protein, A CV094_00650 PF02753 Pili assembly chaperone PapD, C-terminal domain CV094_00650 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CV094_00655 PF13953 PapC C-terminal domain CV094_00655 PF13954 PapC N-terminal domain CV094_00655 PF00577 Outer membrane usher protein CV094_00660 PF00419 Fimbrial protein CV094_00670 PF08240 Alcohol dehydrogenase GroES-like domain CV094_00670 PF00107 Zinc-binding dehydrogenase CV094_00680 PF00199 Catalase CV094_00695 PF13091 PLD-like domain CV094_00715 PF01244 Membrane dipeptidase (Peptidase family M19) CV094_00720 PF13186 Iron-sulfur cluster-binding domain CV094_00720 PF04055 Radical SAM superfamily CV094_00725 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CV094_00730 PF03070 TENA/THI-4/PQQC family CV094_00735 PF12706 Beta-lactamase superfamily domain CV094_00740 PF08042 PqqA family CV094_00745 PF02503 Polyphosphate kinase middle domain CV094_00745 PF13089 Polyphosphate kinase N-terminal domain CV094_00745 PF17941 Polyphosphate kinase C-terminal domain 1 CV094_00745 PF13090 Polyphosphate kinase C-terminal domain 2 CV094_00750 PF00149 Calcineurin-like phosphoesterase CV094_00760 PF00550 Phosphopantetheine attachment site CV094_00760 PF00857 Isochorismatase family CV094_00765 PF00106 short chain dehydrogenase CV094_00770 PF00005 ABC transporter CV094_00770 PF03459 TOBE domain CV094_00775 PF00528 Binding-protein-dependent transport system inner membrane component CV094_00785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_00785 PF03459 TOBE domain CV094_00790 PF00355 Rieske [2Fe-2S] domain CV094_00790 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CV094_00795 PF00866 Ring hydroxylating beta subunit CV094_00800 PF00970 Oxidoreductase FAD-binding domain CV094_00800 PF00111 2Fe-2S iron-sulfur cluster binding domain CV094_00800 PF00175 Oxidoreductase NAD-binding domain CV094_00805 PF12833 Helix-turn-helix domain CV094_00805 PF14525 AraC-binding-like domain CV094_00815 PF01613 Flavin reductase like domain CV094_00830 PF01738 Dienelactone hydrolase family CV094_00835 PF07690 Major Facilitator Superfamily CV094_00840 PF06719 AraC-type transcriptional regulator N-terminus CV094_00840 PF12833 Helix-turn-helix domain CV094_00865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_00865 PF03466 LysR substrate binding domain CV094_00870 PF01144 Coenzyme A transferase CV094_00875 PF01144 Coenzyme A transferase CV094_00880 PF02667 Short chain fatty acid transporter CV094_00885 PF02803 Thiolase, C-terminal domain CV094_00885 PF00108 Thiolase, N-terminal domain CV094_00890 PF03466 LysR substrate binding domain CV094_00890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_00895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_00895 PF03466 LysR substrate binding domain CV094_00910 PF00206 Lyase CV094_00910 PF10415 Fumarase C C-terminus CV094_00915 PF07715 TonB-dependent Receptor Plug Domain CV094_00915 PF00593 TonB dependent receptor CV094_00920 PF00083 Sugar (and other) transporter CV094_00935 PF00005 ABC transporter CV094_00940 PF00528 Binding-protein-dependent transport system inner membrane component CV094_00945 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CV094_00970 PF02525 Flavodoxin-like fold CV094_00975 PF01638 HxlR-like helix-turn-helix CV094_00980 PF06445 GyrI-like small molecule binding domain CV094_00980 PF12833 Helix-turn-helix domain CV094_00995 PF01925 Sulfite exporter TauE/SafE CV094_01000 PF04273 Putative phosphatase (DUF442) CV094_01000 PF00753 Metallo-beta-lactamase superfamily CV094_01005 PF04273 Putative phosphatase (DUF442) CV094_01005 PF00753 Metallo-beta-lactamase superfamily CV094_01010 PF02954 Bacterial regulatory protein, Fis family CV094_01010 PF00158 Sigma-54 interaction domain CV094_01010 PF00072 Response regulator receiver domain CV094_01015 PF01062 Bestrophin, RFP-TM, chloride channel CV094_01020 PF00107 Zinc-binding dehydrogenase CV094_01020 PF08240 Alcohol dehydrogenase GroES-like domain CV094_01025 PF00106 short chain dehydrogenase CV094_01030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CV094_01030 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_01035 PF02817 e3 binding domain CV094_01035 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CV094_01035 PF00364 Biotin-requiring enzyme CV094_01040 PF02779 Transketolase, pyrimidine binding domain CV094_01040 PF02780 Transketolase, C-terminal domain CV094_01045 PF00676 Dehydrogenase E1 component CV094_01050 PF04055 Radical SAM superfamily CV094_01065 PF00990 Diguanylate cyclase, GGDEF domain CV094_01065 PF08448 PAS fold CV094_01070 PF01264 Chorismate synthase CV094_01075 PF05175 Methyltransferase small domain CV094_01080 PF00291 Pyridoxal-phosphate dependent enzyme CV094_01090 PF00004 ATPase family associated with various cellular activities (AAA) CV094_01090 PF17862 AAA+ lid domain CV094_01090 PF01434 Peptidase family M41 CV094_01100 PF05166 YcgL domain CV094_01120 PF01612 3'-5' exonuclease CV094_01120 PF00570 HRDC domain CV094_01125 PF13662 Toprim domain CV094_01125 PF02132 RecR protein CV094_01130 PF02575 YbaB/EbfC DNA-binding family CV094_01140 PF01053 Cys/Met metabolism PLP-dependent enzyme CV094_01145 PF00561 alpha/beta hydrolase fold CV094_01150 PF08241 Methyltransferase domain CV094_01180 PF01230 HIT domain CV094_01215 PF00005 ABC transporter CV094_01220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV094_01230 PF02684 Lipid-A-disaccharide synthetase CV094_01235 PF07715 TonB-dependent Receptor Plug Domain CV094_01235 PF00593 TonB dependent receptor CV094_01255 PF01925 Sulfite exporter TauE/SafE CV094_01260 PF00793 DAHP synthetase I family CV094_01265 PF02654 Cobalamin-5-phosphate synthase CV094_01280 PF02277 Phosphoribosyltransferase CV094_01285 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CV094_01325 PF07715 TonB-dependent Receptor Plug Domain CV094_01325 PF00593 TonB dependent receptor CV094_01340 PF04183 IucA / IucC family CV094_01340 PF06276 Ferric iron reductase FhuF-like transporter CV094_01345 PF04183 IucA / IucC family CV094_01345 PF06276 Ferric iron reductase FhuF-like transporter CV094_01350 PF07690 Major Facilitator Superfamily CV094_01355 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CV094_01360 PF06276 Ferric iron reductase FhuF-like transporter CV094_01360 PF04183 IucA / IucC family CV094_01365 PF04073 Aminoacyl-tRNA editing domain CV094_01375 PF03109 ABC1 family CV094_01380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_01380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_01380 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_01385 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_01385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_01385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_01390 PF00487 Fatty acid desaturase CV094_01395 PF12833 Helix-turn-helix domain CV094_01395 PF12852 Cupin CV094_01400 PF00639 PPIC-type PPIASE domain CV094_01400 PF09312 SurA N-terminal domain CV094_01405 PF00216 Bacterial DNA-binding protein CV094_01420 PF02082 Transcriptional regulator CV094_01425 PF00266 Aminotransferase class-V CV094_01430 PF01592 NifU-like N terminal domain CV094_01435 PF01521 Iron-sulphur cluster biosynthesis CV094_01440 PF07743 HSCB C-terminal oligomerisation domain CV094_01440 PF00226 DnaJ domain CV094_01445 PF00012 Hsp70 protein CV094_01450 PF00111 2Fe-2S iron-sulfur cluster binding domain CV094_01455 PF00211 Adenylate and Guanylate cyclase catalytic domain CV094_01465 PF02559 CarD-like/TRCF domain CV094_01465 PF03461 TRCF domain CV094_01465 PF00270 DEAD/DEAH box helicase CV094_01465 PF00271 Helicase conserved C-terminal domain CV094_01465 PF17757 UvrB interaction domain CV094_01485 PF03737 Aldolase/RraA CV094_01490 PF13460 NAD(P)H-binding CV094_01495 PF01649 Ribosomal protein S20 CV094_01520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CV094_01520 PF00005 ABC transporter CV094_01525 PF00528 Binding-protein-dependent transport system inner membrane component CV094_01530 PF00528 Binding-protein-dependent transport system inner membrane component CV094_01535 PF01432 Peptidase family M3 CV094_01555 PF07715 TonB-dependent Receptor Plug Domain CV094_01555 PF00593 TonB dependent receptor CV094_01565 PF01618 MotA/TolQ/ExbB proton channel family CV094_01570 PF02472 Biopolymer transport protein ExbD/TolR CV094_01575 PF02472 Biopolymer transport protein ExbD/TolR CV094_01585 PF01274 Malate synthase CV094_01590 PF03969 AFG1-like ATPase CV094_01600 PF00743 Flavin-binding monooxygenase-like CV094_01610 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CV094_01620 PF00216 Bacterial DNA-binding protein CV094_01625 PF00575 S1 RNA binding domain CV094_01630 PF02224 Cytidylate kinase CV094_01640 PF14437 MafB19-like deaminase CV094_01650 PF03167 Uracil DNA glycosylase superfamily CV094_01660 PF03934 Type II secretion system (T2SS), protein K CV094_01665 PF07963 Prokaryotic N-terminal methylation motif CV094_01665 PF11612 Type II secretion system (T2SS), protein J CV094_01670 PF07963 Prokaryotic N-terminal methylation motif CV094_01670 PF02501 Type II secretion system (T2SS), protein I CV094_01685 PF01026 TatD related DNase CV094_01695 PF09115 DNA polymerase III, delta subunit, C terminal CV094_01700 PF02348 Cytidylyltransferase CV094_01705 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CV094_01710 PF00664 ABC transporter transmembrane region CV094_01710 PF00005 ABC transporter CV094_01720 PF01618 MotA/TolQ/ExbB proton channel family CV094_01725 PF17762 HTH domain found in ParB protein CV094_01725 PF02195 ParB-like nuclease domain CV094_01730 PF13614 AAA domain CV094_01735 PF02527 rRNA small subunit methyltransferase G CV094_01740 PF00483 Nucleotidyl transferase CV094_01745 PF01636 Phosphotransferase enzyme family CV094_01750 PF04453 LPS transport system D CV094_01750 PF03968 OstA-like protein CV094_01755 PF09312 SurA N-terminal domain CV094_01755 PF00639 PPIC-type PPIASE domain CV094_01760 PF01116 Fructose-bisphosphate aldolase class-II CV094_01770 PF00162 Phosphoglycerate kinase CV094_01780 PF02545 Maf-like protein CV094_01785 PF08007 Cupin superfamily protein CV094_01800 PF00375 Sodium:dicarboxylate symporter family CV094_01805 PF06912 Protein of unknown function (DUF1275) CV094_01810 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CV094_01815 PF00664 ABC transporter transmembrane region CV094_01815 PF00005 ABC transporter CV094_01825 PF12833 Helix-turn-helix domain CV094_01825 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CV094_01830 PF01597 Glycine cleavage H-protein CV094_01835 PF02146 Sir2 family CV094_01840 PF00474 Sodium:solute symporter family CV094_01845 PF01037 Lrp/AsnC ligand binding domain CV094_01850 PF00171 Aldehyde dehydrogenase family CV094_01850 PF01619 Proline dehydrogenase CV094_01850 PF14850 DNA-binding domain of Proline dehydrogenase CV094_01850 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CV094_01855 PF04229 GrpB protein CV094_01860 PF05958 tRNA (Uracil-5-)-methyltransferase CV094_01870 PF09992 Phosphodiester glycosidase CV094_01880 PF04264 YceI-like domain CV094_01890 PF02779 Transketolase, pyrimidine binding domain CV094_01890 PF02780 Transketolase, C-terminal domain CV094_01890 PF00456 Transketolase, thiamine diphosphate binding domain CV094_01895 PF00438 S-adenosylmethionine synthetase, N-terminal domain CV094_01895 PF02772 S-adenosylmethionine synthetase, central domain CV094_01895 PF02773 S-adenosylmethionine synthetase, C-terminal domain CV094_01915 PF00905 Penicillin binding protein transpeptidase domain CV094_01930 PF02075 Crossover junction endodeoxyribonuclease RuvC CV094_01935 PF03853 YjeF-related protein N-terminus CV094_01935 PF01256 Carbohydrate kinase CV094_01940 PF08331 Domain of unknown function (DUF1730) CV094_01945 PF04055 Radical SAM superfamily CV094_01945 PF06968 Biotin and Thiamin Synthesis associated domain CV094_01960 PF16970 Type-1 fimbrial protein, A CV094_01965 PF02753 Pili assembly chaperone PapD, C-terminal domain CV094_01965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CV094_01970 PF13737 Transposase DDE domain CV094_01975 PF13953 PapC C-terminal domain CV094_01975 PF13954 PapC N-terminal domain CV094_01975 PF00577 Outer membrane usher protein CV094_02000 PF00892 EamA-like transporter family CV094_02010 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CV094_02020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02020 PF03466 LysR substrate binding domain CV094_02040 PF00440 Bacterial regulatory proteins, tetR family CV094_02050 PF01709 Transcriptional regulator CV094_02065 PF01037 Lrp/AsnC ligand binding domain CV094_02075 PF00005 ABC transporter CV094_02080 PF00528 Binding-protein-dependent transport system inner membrane component CV094_02085 PF00528 Binding-protein-dependent transport system inner membrane component CV094_02100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_02100 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CV094_02110 PF00296 Luciferase-like monooxygenase CV094_02115 PF03180 NLPA lipoprotein CV094_02120 PF03180 NLPA lipoprotein CV094_02125 PF09383 NIL domain CV094_02125 PF00005 ABC transporter CV094_02130 PF00528 Binding-protein-dependent transport system inner membrane component CV094_02135 PF01926 50S ribosome-binding GTPase CV094_02135 PF06071 Protein of unknown function (DUF933) CV094_02160 PF03591 AzlC protein CV094_02165 PF05437 Branched-chain amino acid transport protein (AzlD) CV094_02175 PF02222 ATP-grasp domain CV094_02180 PF08335 GlnD PII-uridylyltransferase CV094_02180 PF01966 HD domain CV094_02180 PF01909 Nucleotidyltransferase domain CV094_02185 PF00155 Aminotransferase class I and II CV094_02195 PF12833 Helix-turn-helix domain CV094_02195 PF12852 Cupin CV094_02200 PF00255 Glutathione peroxidase CV094_02205 PF01641 SelR domain CV094_02210 PF00155 Aminotransferase class I and II CV094_02215 PF00375 Sodium:dicarboxylate symporter family CV094_02220 PF00710 Asparaginase, N-terminal CV094_02220 PF17763 Glutaminase/Asparaginase C-terminal domain CV094_02225 PF07733 Bacterial DNA polymerase III alpha NTPase domain CV094_02225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CV094_02225 PF01336 OB-fold nucleic acid binding domain CV094_02225 PF02811 PHP domain CV094_02225 PF14579 Helix-hairpin-helix motif CV094_02230 PF00588 SpoU rRNA Methylase family CV094_02235 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_02250 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_02250 PF13192 Thioredoxin domain CV094_02265 PF03466 LysR substrate binding domain CV094_02265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02270 PF01758 Sodium Bile acid symporter family CV094_02275 PF01022 Bacterial regulatory protein, arsR family CV094_02280 PF03960 ArsC family CV094_02290 PF01979 Amidohydrolase family CV094_02290 PF13382 Adenine deaminase C-terminal domain CV094_02300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02300 PF03466 LysR substrate binding domain CV094_02310 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CV094_02315 PF01177 Asp/Glu/Hydantoin racemase CV094_02320 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CV094_02325 PF00528 Binding-protein-dependent transport system inner membrane component CV094_02330 PF00005 ABC transporter CV094_02335 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CV094_02345 PF00083 Sugar (and other) transporter CV094_02350 PF00296 Luciferase-like monooxygenase CV094_02355 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CV094_02355 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_02355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_02370 PF01654 Cytochrome bd terminal oxidase subunit I CV094_02375 PF02322 Cytochrome bd terminal oxidase subunit II CV094_02385 PF00155 Aminotransferase class I and II CV094_02385 PF00392 Bacterial regulatory proteins, gntR family CV094_02390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02390 PF03466 LysR substrate binding domain CV094_02405 PF00698 Acyl transferase domain CV094_02410 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CV094_02420 PF01039 Carboxyl transferase domain CV094_02425 PF06857 Malonate decarboxylase delta subunit (MdcD) CV094_02430 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CV094_02435 PF16957 Malonate decarboxylase, alpha subunit, transporter CV094_02440 PF07690 Major Facilitator Superfamily CV094_02455 PF00392 Bacterial regulatory proteins, gntR family CV094_02455 PF00155 Aminotransferase class I and II CV094_02460 PF04172 LrgB-like family CV094_02465 PF03788 LrgA family CV094_02470 PF03466 LysR substrate binding domain CV094_02470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02475 PF14834 Glutathione S-transferase, C-terminal domain CV094_02475 PF02798 Glutathione S-transferase, N-terminal domain CV094_02480 PF02798 Glutathione S-transferase, N-terminal domain CV094_02485 PF03466 LysR substrate binding domain CV094_02485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02495 PF00581 Rhodanese-like domain CV094_02500 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_02510 PF00266 Aminotransferase class-V CV094_02520 PF01810 LysE type translocator CV094_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02525 PF03466 LysR substrate binding domain CV094_02535 PF00497 Bacterial extracellular solute-binding proteins, family 3 CV094_02540 PF00497 Bacterial extracellular solute-binding proteins, family 3 CV094_02545 PF00005 ABC transporter CV094_02550 PF00528 Binding-protein-dependent transport system inner membrane component CV094_02555 PF00528 Binding-protein-dependent transport system inner membrane component CV094_02570 PF00072 Response regulator receiver domain CV094_02575 PF00512 His Kinase A (phospho-acceptor) domain CV094_02575 PF00072 Response regulator receiver domain CV094_02575 PF09308 LuxQ, periplasmic CV094_02575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_02585 PF13404 AsnC-type helix-turn-helix domain CV094_02585 PF01037 Lrp/AsnC ligand binding domain CV094_02600 PF00717 Peptidase S24-like CV094_02625 PF13737 Transposase DDE domain CV094_02635 PF18011 C-terminal domain found in long catalases CV094_02635 PF00199 Catalase CV094_02635 PF06628 Catalase-related immune-responsive CV094_02645 PF18146 Damage-inducible protein CinA KH domain CV094_02645 PF02464 Competence-damaged protein CV094_02645 PF00994 Probable molybdopterin binding domain CV094_02675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02675 PF03466 LysR substrate binding domain CV094_02695 PF00501 AMP-binding enzyme CV094_02695 PF13193 AMP-binding enzyme C-terminal domain CV094_02700 PF00440 Bacterial regulatory proteins, tetR family CV094_02705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_02705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_02705 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_02710 PF01039 Carboxyl transferase domain CV094_02715 PF00378 Enoyl-CoA hydratase/isomerase CV094_02720 PF02785 Biotin carboxylase C-terminal domain CV094_02720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CV094_02720 PF00364 Biotin-requiring enzyme CV094_02720 PF00289 Biotin carboxylase, N-terminal domain CV094_02725 PF00682 HMGL-like CV094_02730 PF03466 LysR substrate binding domain CV094_02730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02745 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_02745 PF12806 Acetyl-CoA dehydrogenase C-terminal like CV094_02745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_02745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_02755 PF07690 Major Facilitator Superfamily CV094_02765 PF01144 Coenzyme A transferase CV094_02770 PF01144 Coenzyme A transferase CV094_02775 PF07690 Major Facilitator Superfamily CV094_02780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_02780 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_02780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_02785 PF00378 Enoyl-CoA hydratase/isomerase CV094_02795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CV094_02795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CV094_02795 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CV094_02800 PF00108 Thiolase, N-terminal domain CV094_02800 PF02803 Thiolase, C-terminal domain CV094_02805 PF09339 IclR helix-turn-helix domain CV094_02810 PF07690 Major Facilitator Superfamily CV094_02815 PF03060 Nitronate monooxygenase CV094_02820 PF00378 Enoyl-CoA hydratase/isomerase CV094_02825 PF09339 IclR helix-turn-helix domain CV094_02830 PF02515 CoA-transferase family III CV094_02835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_02835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_02835 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_02840 PF07690 Major Facilitator Superfamily CV094_02845 PF13419 Haloacid dehalogenase-like hydrolase CV094_02850 PF00266 Aminotransferase class-V CV094_02855 PF01266 FAD dependent oxidoreductase CV094_02860 PF00528 Binding-protein-dependent transport system inner membrane component CV094_02865 PF00005 ABC transporter CV094_02865 PF08402 TOBE domain CV094_02875 PF07702 UTRA domain CV094_02875 PF00392 Bacterial regulatory proteins, gntR family CV094_02880 PF01494 FAD binding domain CV094_02885 PF09339 IclR helix-turn-helix domain CV094_02885 PF01614 Bacterial transcriptional regulator CV094_02890 PF02525 Flavodoxin-like fold CV094_02895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_02895 PF03466 LysR substrate binding domain CV094_02900 PF02627 Carboxymuconolactone decarboxylase family CV094_02905 PF00171 Aldehyde dehydrogenase family CV094_02915 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CV094_02925 PF00171 Aldehyde dehydrogenase family CV094_02930 PF00296 Luciferase-like monooxygenase CV094_02935 PF01613 Flavin reductase like domain CV094_02940 PF12697 Alpha/beta hydrolase family CV094_02960 PF01292 Prokaryotic cytochrome b561 CV094_02965 PF00199 Catalase CV094_03005 PF03061 Thioesterase superfamily CV094_03010 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_03015 PF08223 PaaX-like protein C-terminal domain CV094_03015 PF07848 PaaX-like protein CV094_03020 PF14535 AMP-binding enzyme C-terminal domain CV094_03020 PF00501 AMP-binding enzyme CV094_03025 PF00108 Thiolase, N-terminal domain CV094_03025 PF02803 Thiolase, C-terminal domain CV094_03030 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CV094_03030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CV094_03030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CV094_03035 PF00378 Enoyl-CoA hydratase/isomerase CV094_03040 PF00378 Enoyl-CoA hydratase/isomerase CV094_03045 PF00175 Oxidoreductase NAD-binding domain CV094_03045 PF00111 2Fe-2S iron-sulfur cluster binding domain CV094_03045 PF00970 Oxidoreductase FAD-binding domain CV094_03050 PF01883 Iron-sulfur cluster assembly protein CV094_03055 PF05138 Phenylacetic acid catabolic protein CV094_03060 PF06243 Phenylacetic acid degradation B CV094_03065 PF05138 Phenylacetic acid catabolic protein CV094_03070 PF00171 Aldehyde dehydrogenase family CV094_03070 PF01575 MaoC like domain CV094_03075 PF03315 Serine dehydratase beta chain CV094_03075 PF03313 Serine dehydratase alpha chain CV094_03080 PF13520 Amino acid permease CV094_03085 PF00171 Aldehyde dehydrogenase family CV094_03090 PF00083 Sugar (and other) transporter CV094_03100 PF04324 BFD-like [2Fe-2S] binding domain CV094_03100 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_03110 PF01266 FAD dependent oxidoreductase CV094_03115 PF05544 Proline racemase CV094_03120 PF00392 Bacterial regulatory proteins, gntR family CV094_03130 PF00701 Dihydrodipicolinate synthetase family CV094_03145 PF00376 MerR family regulatory protein CV094_03145 PF09278 MerR, DNA binding CV094_03170 PF00005 ABC transporter CV094_03175 PF00497 Bacterial extracellular solute-binding proteins, family 3 CV094_03180 PF01425 Amidase CV094_03185 PF08753 NikR C terminal nickel binding domain CV094_03185 PF01402 Ribbon-helix-helix protein, copG family CV094_03205 PF02525 Flavodoxin-like fold CV094_03210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CV094_03210 PF02785 Biotin carboxylase C-terminal domain CV094_03210 PF00289 Biotin carboxylase, N-terminal domain CV094_03225 PF08240 Alcohol dehydrogenase GroES-like domain CV094_03225 PF00107 Zinc-binding dehydrogenase CV094_03225 PF13823 Alcohol dehydrogenase GroES-associated CV094_03235 PF00440 Bacterial regulatory proteins, tetR family CV094_03265 PF13610 DDE domain CV094_03290 PF03050 Transposase IS66 family CV094_03290 PF13005 zinc-finger binding domain of transposase IS66 CV094_03290 PF13007 Transposase C of IS166 homeodomain CV094_03290 PF13817 IS66 C-terminal element CV094_03300 PF01636 Phosphotransferase enzyme family CV094_03325 PF07091 Ribosomal RNA methyltransferase (FmrO) CV094_03345 PF00809 Pterin binding enzyme CV094_03350 PF00893 Small Multidrug Resistance protein CV094_03355 PF01909 Nucleotidyltransferase domain CV094_03355 PF13427 Domain of unknown function (DUF4111) CV094_03360 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_03375 PF13610 DDE domain CV094_03390 PF13610 DDE domain CV094_03400 PF07995 Glucose / Sorbosone dehydrogenase CV094_03405 PF00892 EamA-like transporter family CV094_03410 PF01177 Asp/Glu/Hydantoin racemase CV094_03420 PF02470 MlaD protein CV094_03425 PF04403 Paraquat-inducible protein A CV094_03435 PF02080 TrkA-C domain CV094_03435 PF06826 Predicted Permease Membrane Region CV094_03440 PF00155 Aminotransferase class I and II CV094_03465 PF08946 Osmosensory transporter coiled coil CV094_03465 PF00083 Sugar (and other) transporter CV094_03515 PF00392 Bacterial regulatory proteins, gntR family CV094_03515 PF07729 FCD domain CV094_03525 PF03616 Sodium/glutamate symporter CV094_03530 PF00561 alpha/beta hydrolase fold CV094_03555 PF04076 Bacterial OB fold (BOF) protein CV094_03580 PF13737 Transposase DDE domain CV094_03590 PF00324 Amino acid permease CV094_03595 PF00171 Aldehyde dehydrogenase family CV094_03600 PF00202 Aminotransferase class-III CV094_03605 PF03466 LysR substrate binding domain CV094_03605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_03630 PF00069 Protein kinase domain CV094_03650 PF00814 Glycoprotease family CV094_03655 PF01165 Ribosomal protein S21 CV094_03660 PF09424 Yqey-like protein CV094_03665 PF01435 Peptidase family M48 CV094_03670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CV094_03670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CV094_03685 PF00156 Phosphoribosyl transferase domain CV094_03690 PF02674 Colicin V production protein CV094_03695 PF01180 Dihydroorotate dehydrogenase CV094_03715 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CV094_03715 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CV094_03720 PF00881 Nitroreductase family CV094_03730 PF00271 Helicase conserved C-terminal domain CV094_03730 PF00270 DEAD/DEAH box helicase CV094_03735 PF00313 'Cold-shock' DNA-binding domain CV094_03745 PF04545 Sigma-70, region 4 CV094_03745 PF00140 Sigma-70 factor, region 1.2 CV094_03745 PF04542 Sigma-70 region 2 CV094_03750 PF04241 Protein of unknown function (DUF423) CV094_03760 PF05690 Thiazole biosynthesis protein ThiG CV094_03770 PF03883 Peroxide stress protein YaaA CV094_03780 PF12706 Beta-lactamase superfamily domain CV094_03785 PF01546 Peptidase family M20/M25/M40 CV094_03785 PF07687 Peptidase dimerisation domain CV094_03795 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CV094_03800 PF00800 Prephenate dehydratase CV094_03800 PF01817 Chorismate mutase type II CV094_03800 PF01842 ACT domain CV094_03805 PF00756 Putative esterase CV094_03810 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_03810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_03810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_03815 PF00375 Sodium:dicarboxylate symporter family CV094_03825 PF02885 Glycosyl transferase family, helical bundle domain CV094_03825 PF00591 Glycosyl transferase family, a/b domain CV094_03830 PF07023 Protein of unknown function (DUF1315) CV094_03835 PF01513 ATP-NAD kinase CV094_03840 PF00905 Penicillin binding protein transpeptidase domain CV094_03840 PF14814 Bifunctional transglycosylase second domain CV094_03840 PF00912 Transglycosylase CV094_03850 PF00293 NUDIX domain CV094_03860 PF00512 His Kinase A (phospho-acceptor) domain CV094_03860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_03860 PF08521 Two-component sensor kinase N-terminal CV094_03865 PF00486 Transcriptional regulatory protein, C terminal CV094_03865 PF00072 Response regulator receiver domain CV094_03875 PF00437 Type II/IV secretion system protein CV094_03885 PF01980 tRNA-methyltransferase O CV094_03885 PF18389 TrmO C-terminal domain CV094_03890 PF00970 Oxidoreductase FAD-binding domain CV094_03890 PF00175 Oxidoreductase NAD-binding domain CV094_03895 PF02567 Phenazine biosynthesis-like protein CV094_03900 PF00155 Aminotransferase class I and II CV094_03900 PF00392 Bacterial regulatory proteins, gntR family CV094_03910 PF00037 4Fe-4S binding domain CV094_03915 PF00893 Small Multidrug Resistance protein CV094_03920 PF00005 ABC transporter CV094_03925 PF00528 Binding-protein-dependent transport system inner membrane component CV094_03930 PF00528 Binding-protein-dependent transport system inner membrane component CV094_03935 PF00497 Bacterial extracellular solute-binding proteins, family 3 CV094_03940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_03940 PF03466 LysR substrate binding domain CV094_03945 PF13533 Biotin-lipoyl like CV094_03950 PF00873 AcrB/AcrD/AcrF family CV094_03955 PF02321 Outer membrane efflux protein CV094_03960 PF00464 Serine hydroxymethyltransferase CV094_03990 PF00005 ABC transporter CV094_03995 PF01061 ABC-2 type transporter CV094_04000 PF14489 QueF-like protein CV094_04000 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CV094_04010 PF01098 Cell cycle protein CV094_04015 PF13406 Transglycosylase SLT domain CV094_04020 PF05036 Sporulation related domain CV094_04020 PF03330 Lytic transglycolase CV094_04040 PF12833 Helix-turn-helix domain CV094_04050 PF00889 Elongation factor TS CV094_04055 PF00318 Ribosomal protein S2 CV094_04060 PF00557 Metallopeptidase family M24 CV094_04070 PF07690 Major Facilitator Superfamily CV094_04080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CV094_04080 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_04085 PF04055 Radical SAM superfamily CV094_04090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_04090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_04090 PF09317 Domain of unknown function (DUF1974) CV094_04105 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CV094_04105 PF05221 S-adenosyl-L-homocysteine hydrolase CV094_04110 PF02219 Methylenetetrahydrofolate reductase CV094_04115 PF04452 RNA methyltransferase CV094_04120 PF03707 Bacterial signalling protein N terminal repeat CV094_04120 PF00990 Diguanylate cyclase, GGDEF domain CV094_04120 PF00563 EAL domain CV094_04125 PF00390 Malic enzyme, N-terminal domain CV094_04125 PF03949 Malic enzyme, NAD binding domain CV094_04125 PF01515 Phosphate acetyl/butaryl transferase CV094_04130 PF12627 Probable RNA and SrmB- binding site of polymerase A CV094_04130 PF01743 Poly A polymerase head domain CV094_04135 PF13180 PDZ domain CV094_04140 PF01784 NIF3 (NGG1p interacting factor 3) CV094_04145 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CV094_04145 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CV094_04180 PF01040 UbiA prenyltransferase family CV094_04185 PF04345 Chorismate lyase CV094_04195 PF00854 POT family CV094_04205 PF00117 Glutamine amidotransferase class-I CV094_04210 PF01433 Peptidase family M1 domain CV094_04210 PF11838 ERAP1-like C-terminal domain CV094_04215 PF07715 TonB-dependent Receptor Plug Domain CV094_04215 PF00593 TonB dependent receptor CV094_04220 PF00591 Glycosyl transferase family, a/b domain CV094_04220 PF02885 Glycosyl transferase family, helical bundle domain CV094_04225 PF00218 Indole-3-glycerol phosphate synthase CV094_04240 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CV094_04240 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CV094_04245 PF00111 2Fe-2S iron-sulfur cluster binding domain CV094_04245 PF01799 [2Fe-2S] binding domain CV094_04260 PF00144 Beta-lactamase CV094_04275 PF05675 Protein of unknown function (DUF817) CV094_04280 PF01208 Uroporphyrinogen decarboxylase (URO-D) CV094_04295 PF00425 chorismate binding enzyme CV094_04305 PF00975 Thioesterase domain CV094_04310 PF00664 ABC transporter transmembrane region CV094_04310 PF00005 ABC transporter CV094_04315 PF00005 ABC transporter CV094_04315 PF00664 ABC transporter transmembrane region CV094_04325 PF00282 Pyridoxal-dependent decarboxylase conserved domain CV094_04330 PF00857 Isochorismatase family CV094_04330 PF00550 Phosphopantetheine attachment site CV094_04335 PF00501 AMP-binding enzyme CV094_04335 PF13193 AMP-binding enzyme C-terminal domain CV094_04340 PF00501 AMP-binding enzyme CV094_04340 PF00668 Condensation domain CV094_04340 PF00550 Phosphopantetheine attachment site CV094_04345 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CV094_04350 PF07715 TonB-dependent Receptor Plug Domain CV094_04350 PF00593 TonB dependent receptor CV094_04355 PF01497 Periplasmic binding protein CV094_04360 PF00005 ABC transporter CV094_04365 PF01032 FecCD transport family CV094_04370 PF01032 FecCD transport family CV094_04375 PF00501 AMP-binding enzyme CV094_04375 PF13193 AMP-binding enzyme C-terminal domain CV094_04375 PF00668 Condensation domain CV094_04375 PF00550 Phosphopantetheine attachment site CV094_04375 PF00975 Thioesterase domain CV094_04380 PF00501 AMP-binding enzyme CV094_04380 PF00550 Phosphopantetheine attachment site CV094_04380 PF13193 AMP-binding enzyme C-terminal domain CV094_04380 PF00668 Condensation domain CV094_04390 PF13309 HTH domain CV094_04390 PF08348 YheO-like PAS domain CV094_04400 PF02678 Pirin CV094_04400 PF17954 Quercetinase C-terminal cupin domain CV094_04420 PF00440 Bacterial regulatory proteins, tetR family CV094_04425 PF08240 Alcohol dehydrogenase GroES-like domain CV094_04425 PF08659 KR domain CV094_04425 PF00698 Acyl transferase domain CV094_04425 PF02801 Beta-ketoacyl synthase, C-terminal domain CV094_04425 PF00109 Beta-ketoacyl synthase, N-terminal domain CV094_04425 PF16197 Ketoacyl-synthetase C-terminal extension CV094_04425 PF00550 Phosphopantetheine attachment site CV094_04425 PF14765 Polyketide synthase dehydratase CV094_04425 PF08990 Erythronolide synthase docking CV094_04425 PF09277 Erythronolide synthase, docking CV094_04430 PF13378 Enolase C-terminal domain-like CV094_04430 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CV094_04435 PF00083 Sugar (and other) transporter CV094_04440 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CV094_04450 PF00892 EamA-like transporter family CV094_04470 PF01266 FAD dependent oxidoreductase CV094_04470 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CV094_04475 PF18113 Rubredoxin binding C-terminal domain CV094_04475 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_04485 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CV094_04485 PF00355 Rieske [2Fe-2S] domain CV094_04490 PF02028 BCCT, betaine/carnitine/choline family transporter CV094_04495 PF02028 BCCT, betaine/carnitine/choline family transporter CV094_04500 PF13737 Transposase DDE domain CV094_04505 PF03466 LysR substrate binding domain CV094_04505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_04510 PF00324 Amino acid permease CV094_04515 PF00171 Aldehyde dehydrogenase family CV094_04530 PF13556 PucR C-terminal helix-turn-helix domain CV094_04530 PF17853 GGDEF-like domain CV094_04530 PF06018 CodY GAF-like domain CV094_04565 PF04328 Selenoprotein, putative CV094_04570 PF13722 5TM C-terminal transporter carbon starvation CstA CV094_04570 PF02554 Carbon starvation protein CstA CV094_04575 PF08207 Elongation factor P (EF-P) KOW-like domain CV094_04575 PF09285 Elongation factor P, C-terminal CV094_04575 PF01132 Elongation factor P (EF-P) OB domain CV094_04580 PF04055 Radical SAM superfamily CV094_04595 PF01197 Ribosomal protein L31 CV094_04600 PF13593 SBF-like CPA transporter family (DUF4137) CV094_04605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CV094_04610 PF07690 Major Facilitator Superfamily CV094_04615 PF13654 AAA domain CV094_04615 PF05362 Lon protease (S16) C-terminal proteolytic domain CV094_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_04620 PF03466 LysR substrate binding domain CV094_04625 PF01551 Peptidase family M23 CV094_04625 PF01476 LysM domain CV094_04630 PF01975 Survival protein SurE CV094_04645 PF00768 D-alanyl-D-alanine carboxypeptidase CV094_04645 PF07943 Penicillin-binding protein 5, C-terminal domain CV094_04650 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_04655 PF13344 Haloacid dehalogenase-like hydrolase CV094_04655 PF00293 NUDIX domain CV094_04665 PF04356 Protein of unknown function (DUF489) CV094_04670 PF08328 Adenylosuccinate lyase C-terminal CV094_04670 PF00206 Lyase CV094_04685 PF08496 Peptidase family S49 N-terminal CV094_04685 PF01343 Peptidase family S49 CV094_04690 PF00005 ABC transporter CV094_04695 PF00528 Binding-protein-dependent transport system inner membrane component CV094_04700 PF00528 Binding-protein-dependent transport system inner membrane component CV094_04705 PF12849 PBP superfamily domain CV094_04710 PF00324 Amino acid permease CV094_04715 PF00205 Thiamine pyrophosphate enzyme, central domain CV094_04715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CV094_04715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CV094_04720 PF01037 Lrp/AsnC ligand binding domain CV094_04725 PF00171 Aldehyde dehydrogenase family CV094_04730 PF00282 Pyridoxal-dependent decarboxylase conserved domain CV094_04735 PF00202 Aminotransferase class-III CV094_04745 PF17754 MftR C-terminal domain CV094_04745 PF00440 Bacterial regulatory proteins, tetR family CV094_04755 PF00487 Fatty acid desaturase CV094_04760 PF00970 Oxidoreductase FAD-binding domain CV094_04760 PF00175 Oxidoreductase NAD-binding domain CV094_04760 PF00111 2Fe-2S iron-sulfur cluster binding domain CV094_04765 PF00440 Bacterial regulatory proteins, tetR family CV094_04775 PF18339 RapA N-terminal Tudor like domain 1 CV094_04775 PF12137 RNA polymerase recycling family C-terminal CV094_04775 PF00271 Helicase conserved C-terminal domain CV094_04775 PF00176 SNF2 family N-terminal domain CV094_04775 PF18337 RapA N-terminal Tudor like domain CV094_04780 PF00849 RNA pseudouridylate synthase CV094_04790 PF00202 Aminotransferase class-III CV094_04795 PF02581 Thiamine monophosphate synthase CV094_04820 PF00675 Insulinase (Peptidase family M16) CV094_04820 PF05193 Peptidase M16 inactive domain CV094_04825 PF02567 Phenazine biosynthesis-like protein CV094_04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_04835 PF03466 LysR substrate binding domain CV094_04840 PF06779 Uncharacterised MFS-type transporter YbfB CV094_04860 PF00180 Isocitrate/isopropylmalate dehydrogenase CV094_04865 PF00849 RNA pseudouridylate synthase CV094_04870 PF03971 Monomeric isocitrate dehydrogenase CV094_04880 PF07943 Penicillin-binding protein 5, C-terminal domain CV094_04880 PF00768 D-alanyl-D-alanine carboxypeptidase CV094_04885 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_04890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CV094_04895 PF00875 DNA photolyase CV094_04895 PF03441 FAD binding domain of DNA photolyase CV094_04925 PF02350 UDP-N-acetylglucosamine 2-epimerase CV094_04940 PF03060 Nitronate monooxygenase CV094_04945 PF01207 Dihydrouridine synthase (Dus) CV094_04950 PF00589 Phage integrase family CV094_05280 PF07759 Protein of unknown function (DUF1615) CV094_05290 PF00696 Amino acid kinase family CV094_05290 PF01472 PUA domain CV094_05295 PF01018 GTP1/OBG CV094_05295 PF01926 50S ribosome-binding GTPase CV094_05310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CV094_05310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CV094_05315 PF00892 EamA-like transporter family CV094_05325 PF02151 UvrB/uvrC motif CV094_05325 PF04851 Type III restriction enzyme, res subunit CV094_05325 PF12344 Ultra-violet resistance protein B CV094_05325 PF17757 UvrB interaction domain CV094_05325 PF00271 Helicase conserved C-terminal domain CV094_05335 PF17151 Periplasmic sensor domain CV094_05335 PF00990 Diguanylate cyclase, GGDEF domain CV094_05375 PF00106 short chain dehydrogenase CV094_05380 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CV094_05385 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CV094_05390 PF02565 Recombination protein O C terminal CV094_05390 PF11967 Recombination protein O N terminal CV094_05400 PF07650 KH domain CV094_05400 PF01926 50S ribosome-binding GTPase CV094_05405 PF00035 Double-stranded RNA binding motif CV094_05405 PF14622 Ribonuclease-III-like CV094_05415 PF10502 Signal peptidase, peptidase S26 CV094_05420 PF06421 GTP-binding protein LepA C-terminus CV094_05420 PF03144 Elongation factor Tu domain 2 CV094_05420 PF00009 Elongation factor Tu GTP binding domain CV094_05420 PF00679 Elongation factor G C-terminus CV094_05430 PF13180 PDZ domain CV094_05435 PF00890 FAD binding domain CV094_05435 PF02910 Fumarate reductase flavoprotein C-term CV094_05445 PF02223 Thymidylate kinase CV094_05450 PF02618 YceG-like family CV094_05455 PF01063 Amino-transferase class IV CV094_05470 PF00528 Binding-protein-dependent transport system inner membrane component CV094_05475 PF00528 Binding-protein-dependent transport system inner membrane component CV094_05480 PF12857 TOBE-like domain CV094_05480 PF00005 ABC transporter CV094_05485 PF03466 LysR substrate binding domain CV094_05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_05495 PF14602 Hexapeptide repeat of succinyl-transferase CV094_05495 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_05495 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CV094_05505 PF06508 Queuosine biosynthesis protein QueC CV094_05520 PF00578 AhpC/TSA family CV094_05530 PF00293 NUDIX domain CV094_05530 PF01467 Cytidylyltransferase-like CV094_05535 PF00378 Enoyl-CoA hydratase/isomerase CV094_05540 PF01784 NIF3 (NGG1p interacting factor 3) CV094_05545 PF07690 Major Facilitator Superfamily CV094_05550 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CV094_05550 PF02769 AIR synthase related protein, C-terminal domain CV094_05550 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CV094_05555 PF01966 HD domain CV094_05560 PF07499 RuvA, C-terminal domain CV094_05560 PF01330 RuvA N terminal domain CV094_05565 PF17864 RuvB AAA lid domain CV094_05565 PF05491 RuvB C-terminal winged helix domain CV094_05565 PF05496 Holliday junction DNA helicase RuvB P-loop domain CV094_05570 PF01546 Peptidase family M20/M25/M40 CV094_05570 PF07687 Peptidase dimerisation domain CV094_05575 PF03061 Thioesterase superfamily CV094_05580 PF01618 MotA/TolQ/ExbB proton channel family CV094_05585 PF02472 Biopolymer transport protein ExbD/TolR CV094_05595 PF07676 WD40-like Beta Propeller Repeat CV094_05595 PF04052 TolB amino-terminal domain CV094_05600 PF00691 OmpA family CV094_05610 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CV094_05615 PF00588 SpoU rRNA Methylase family CV094_05615 PF08032 RNA 2'-O ribose methyltransferase substrate binding CV094_05655 PF00308 Bacterial dnaA protein CV094_05655 PF11638 DnaA N-terminal domain CV094_05655 PF08299 Bacterial dnaA protein helix-turn-helix CV094_05660 PF01594 AI-2E family transporter CV094_05665 PF00586 AIR synthase related protein, N-terminal domain CV094_05665 PF02769 AIR synthase related protein, C-terminal domain CV094_05670 PF00551 Formyl transferase CV094_05675 PF12697 Alpha/beta hydrolase family CV094_05680 PF01343 Peptidase family S49 CV094_05680 PF06965 Na+/H+ antiporter 1 CV094_05690 PF13567 Domain of unknown function (DUF4131) CV094_05690 PF00753 Metallo-beta-lactamase superfamily CV094_05690 PF03772 Competence protein CV094_05695 PF00005 ABC transporter CV094_05700 PF02687 FtsX-like permease family CV094_05700 PF12704 MacB-like periplasmic core domain CV094_05710 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CV094_05720 PF00266 Aminotransferase class-V CV094_05730 PF13533 Biotin-lipoyl like CV094_05750 PF00535 Glycosyl transferase family 2 CV094_05765 PF03989 DNA gyrase C-terminal domain, beta-propeller CV094_05765 PF00521 DNA gyrase/topoisomerase IV, subunit A CV094_05770 PF01012 Electron transfer flavoprotein domain CV094_05770 PF00766 Electron transfer flavoprotein FAD-binding domain CV094_05775 PF01012 Electron transfer flavoprotein domain CV094_05780 PF02899 Phage integrase, N-terminal SAM-like domain CV094_05780 PF00589 Phage integrase family CV094_05785 PF01810 LysE type translocator CV094_05790 PF01678 Diaminopimelate epimerase CV094_05795 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CV094_05795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CV094_05805 PF00324 Amino acid permease CV094_05810 PF18073 Rubredoxin metal binding domain CV094_05820 PF00152 tRNA synthetases class II (D, K and N) CV094_05825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CV094_05825 PF11890 Domain of unknown function (DUF3410) CV094_05825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CV094_05830 PF06803 Protein of unknown function (DUF1232) CV094_05835 PF02634 FdhD/NarQ family CV094_05840 PF00384 Molybdopterin oxidoreductase CV094_05845 PF02595 Glycerate kinase family CV094_05860 PF00881 Nitroreductase family CV094_05885 PF00501 AMP-binding enzyme CV094_05885 PF00668 Condensation domain CV094_05885 PF00550 Phosphopantetheine attachment site CV094_05885 PF00975 Thioesterase domain CV094_05885 PF13193 AMP-binding enzyme C-terminal domain CV094_05900 PF01272 Transcription elongation factor, GreA/GreB, C-term CV094_05900 PF03449 Transcription elongation factor, N-terminal CV094_05905 PF01464 Transglycosylase SLT domain CV094_05905 PF00497 Bacterial extracellular solute-binding proteins, family 3 CV094_05915 PF01171 PP-loop family CV094_05925 PF01464 Transglycosylase SLT domain CV094_05930 PF01435 Peptidase family M48 CV094_05945 PF03009 Glycerophosphoryl diester phosphodiesterase family CV094_05955 PF01219 Prokaryotic diacylglycerol kinase CV094_05960 PF00118 TCP-1/cpn60 chaperonin family CV094_05965 PF00166 Chaperonin 10 Kd subunit CV094_05975 PF00149 Calcineurin-like phosphoesterase CV094_05980 PF00781 Diacylglycerol kinase catalytic domain CV094_05985 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CV094_05985 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CV094_05990 PF01266 FAD dependent oxidoreductase CV094_05990 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CV094_05995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CV094_05995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CV094_06000 PF00083 Sugar (and other) transporter CV094_06015 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CV094_06015 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CV094_06030 PF09423 PhoD-like phosphatase CV094_06030 PF16655 PhoD-like phosphatase, N-terminal domain CV094_06050 PF00809 Pterin binding enzyme CV094_06055 PF00004 ATPase family associated with various cellular activities (AAA) CV094_06055 PF17862 AAA+ lid domain CV094_06055 PF06480 FtsH Extracellular CV094_06055 PF01434 Peptidase family M41 CV094_06060 PF01728 FtsJ-like methyltransferase CV094_06065 PF01985 CRS1 / YhbY (CRM) domain CV094_06080 PF00117 Glutamine amidotransferase class-I CV094_06080 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CV094_06085 PF02142 MGS-like domain CV094_06085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CV094_06085 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CV094_06090 PF03449 Transcription elongation factor, N-terminal CV094_06090 PF01272 Transcription elongation factor, GreA/GreB, C-term CV094_06095 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_06100 PF00582 Universal stress protein family CV094_06105 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CV094_06115 PF09587 Bacterial capsule synthesis protein PGA_cap CV094_06145 PF00999 Sodium/hydrogen exchanger family CV094_06150 PF04228 Putative neutral zinc metallopeptidase CV094_06155 PF05661 Protein of unknown function (DUF808) CV094_06160 PF00579 tRNA synthetases class I (W and Y) CV094_06165 PF00549 CoA-ligase CV094_06165 PF02629 CoA binding domain CV094_06170 PF08442 ATP-grasp domain CV094_06170 PF00549 CoA-ligase CV094_06175 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_06175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CV094_06180 PF02817 e3 binding domain CV094_06180 PF00364 Biotin-requiring enzyme CV094_06180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CV094_06185 PF00676 Dehydrogenase E1 component CV094_06185 PF16078 2-oxoglutarate dehydrogenase N-terminus CV094_06185 PF16870 2-oxoglutarate dehydrogenase C-terminal CV094_06185 PF02779 Transketolase, pyrimidine binding domain CV094_06200 PF13085 2Fe-2S iron-sulfur cluster binding domain CV094_06205 PF02910 Fumarate reductase flavoprotein C-term CV094_06205 PF00890 FAD binding domain CV094_06210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CV094_06215 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CV094_06220 PF00285 Citrate synthase, C-terminal domain CV094_06250 PF04545 Sigma-70, region 4 CV094_06250 PF04539 Sigma-70 region 3 CV094_06250 PF00140 Sigma-70 factor, region 1.2 CV094_06250 PF03979 Sigma-70 factor, region 1.1 CV094_06250 PF04546 Sigma-70, non-essential region CV094_06250 PF04542 Sigma-70 region 2 CV094_06255 PF04359 Protein of unknown function (DUF493) CV094_06260 PF03099 Biotin/lipoate A/B protein ligase family CV094_06270 PF00465 Iron-containing alcohol dehydrogenase CV094_06275 PF13520 Amino acid permease CV094_06280 PF03358 NADPH-dependent FMN reductase CV094_06285 PF01638 HxlR-like helix-turn-helix CV094_06290 PF00588 SpoU rRNA Methylase family CV094_06295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CV094_06295 PF10414 Sirohaem synthase dimerisation region CV094_06295 PF14824 Sirohaem biosynthesis protein central CV094_06300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CV094_06300 PF02403 Seryl-tRNA synthetase N-terminal domain CV094_06310 PF03548 Outer membrane lipoprotein carrier protein LolA CV094_06315 PF01016 Ribosomal L27 protein CV094_06320 PF00829 Ribosomal prokaryotic L21 protein CV094_06330 PF00348 Polyprenyl synthetase CV094_06340 PF01569 PAP2 superfamily CV094_06345 PF00529 HlyD membrane-fusion protein of T1SS CV094_06345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV094_06350 PF00873 AcrB/AcrD/AcrF family CV094_06355 PF02321 Outer membrane efflux protein CV094_06360 PF01906 Putative heavy-metal-binding CV094_06365 PF01906 Putative heavy-metal-binding CV094_06385 PF00133 tRNA synthetases class I (I, L, M and V) CV094_06385 PF08264 Anticodon-binding domain of tRNA CV094_06385 PF10458 Valyl tRNA synthetase tRNA binding arm CV094_06405 PF03466 LysR substrate binding domain CV094_06405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_06415 PF00909 Ammonium Transporter Family CV094_06425 PF08521 Two-component sensor kinase N-terminal CV094_06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_06425 PF00512 His Kinase A (phospho-acceptor) domain CV094_06430 PF00072 Response regulator receiver domain CV094_06430 PF00486 Transcriptional regulatory protein, C terminal CV094_06435 PF00884 Sulfatase CV094_06435 PF08019 Phosphoethanolamine transferase EptA/EptB CV094_06455 PF01734 Patatin-like phospholipase CV094_06465 PF01145 SPFH domain / Band 7 family CV094_06470 PF04237 YjbR CV094_06475 PF00348 Polyprenyl synthetase CV094_06480 PF04303 PrpF protein CV094_06485 PF00324 Amino acid permease CV094_06495 PF01965 DJ-1/PfpI family CV094_06500 PF14765 Polyketide synthase dehydratase CV094_06500 PF00698 Acyl transferase domain CV094_06500 PF08659 KR domain CV094_06500 PF00550 Phosphopantetheine attachment site CV094_06500 PF08990 Erythronolide synthase docking CV094_06500 PF02801 Beta-ketoacyl synthase, C-terminal domain CV094_06500 PF09277 Erythronolide synthase, docking CV094_06500 PF00109 Beta-ketoacyl synthase, N-terminal domain CV094_06500 PF08240 Alcohol dehydrogenase GroES-like domain CV094_06500 PF16197 Ketoacyl-synthetase C-terminal extension CV094_06505 PF12833 Helix-turn-helix domain CV094_06505 PF06719 AraC-type transcriptional regulator N-terminus CV094_06510 PF02673 Bacitracin resistance protein BacA CV094_06530 PF02525 Flavodoxin-like fold CV094_06545 PF01507 Phosphoadenosine phosphosulfate reductase family CV094_06550 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain CV094_06550 PF06974 Protein of unknown function (DUF1298) CV094_06560 PF00575 S1 RNA binding domain CV094_06560 PF10150 Ribonuclease E/G family CV094_06565 PF02545 Maf-like protein CV094_06570 PF04093 rod shape-determining protein MreD CV094_06575 PF04085 rod shape-determining protein MreC CV094_06585 PF02686 Glu-tRNAGln amidotransferase C subunit CV094_06590 PF01425 Amidase CV094_06595 PF02637 GatB domain CV094_06595 PF02934 GatB/GatE catalytic domain CV094_06625 PF05992 SbmA/BacA-like family CV094_06630 PF00291 Pyridoxal-phosphate dependent enzyme CV094_06630 PF13291 ACT domain CV094_06635 PF01734 Patatin-like phospholipase CV094_06640 PF01235 Sodium:alanine symporter family CV094_06655 PF00881 Nitroreductase family CV094_06660 PF07690 Major Facilitator Superfamily CV094_06665 PF12805 FUSC-like inner membrane protein yccS CV094_06675 PF00175 Oxidoreductase NAD-binding domain CV094_06675 PF00258 Flavodoxin CV094_06675 PF00667 FAD binding domain CV094_06715 PF03734 L,D-transpeptidase catalytic domain CV094_06715 PF17969 L,D-transpeptidase C-terminal domain CV094_06720 PF04304 Protein of unknown function (DUF454) CV094_06730 PF08085 Entericidin EcnA/B family CV094_06735 PF07687 Peptidase dimerisation domain CV094_06735 PF01546 Peptidase family M20/M25/M40 CV094_06745 PF00072 Response regulator receiver domain CV094_06745 PF01584 CheW-like domain CV094_06745 PF01627 Hpt domain CV094_06745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_06750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CV094_06750 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CV094_06755 PF01584 CheW-like domain CV094_06760 PF00072 Response regulator receiver domain CV094_06765 PF00072 Response regulator receiver domain CV094_06780 PF00873 AcrB/AcrD/AcrF family CV094_06785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CV094_06785 PF04073 Aminoacyl-tRNA editing domain CV094_06785 PF03129 Anticodon binding domain CV094_06790 PF07411 Domain of unknown function (DUF1508) CV094_06795 PF03831 PhnA domain CV094_06795 PF08274 PhnA Zinc-Ribbon CV094_06800 PF04343 Protein of unknown function, DUF488 CV094_06810 PF01571 Aminomethyltransferase folate-binding domain CV094_06815 PF13098 Thioredoxin-like domain CV094_06815 PF10411 Disulfide bond isomerase protein N-terminus CV094_06830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CV094_06845 PF00593 TonB dependent receptor CV094_06845 PF07715 TonB-dependent Receptor Plug Domain CV094_06850 PF02245 Methylpurine-DNA glycosylase (MPG) CV094_06855 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CV094_06855 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CV094_06855 PF06827 Zinc finger found in FPG and IleRS CV094_06870 PF01741 Large-conductance mechanosensitive channel, MscL CV094_06880 PF00860 Permease family CV094_06885 PF05175 Methyltransferase small domain CV094_06885 PF08468 Methyltransferase small domain N-terminal CV094_06890 PF00324 Amino acid permease CV094_06895 PF01139 tRNA-splicing ligase RtcB CV094_06905 PF00691 OmpA family CV094_06905 PF13505 Outer membrane protein beta-barrel domain CV094_06915 PF00108 Thiolase, N-terminal domain CV094_06915 PF02803 Thiolase, C-terminal domain CV094_06925 PF00893 Small Multidrug Resistance protein CV094_06935 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CV094_06935 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CV094_06940 PF01011 PQQ enzyme repeat CV094_06945 PF04966 Carbohydrate-selective porin, OprB family CV094_06950 PF02515 CoA-transferase family III CV094_06955 PF12833 Helix-turn-helix domain CV094_06955 PF02311 AraC-like ligand binding domain CV094_06960 PF02803 Thiolase, C-terminal domain CV094_06960 PF00108 Thiolase, N-terminal domain CV094_06965 PF00378 Enoyl-CoA hydratase/isomerase CV094_06965 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CV094_06965 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CV094_06990 PF03006 Haemolysin-III related CV094_06995 PF00083 Sugar (and other) transporter CV094_06995 PF07690 Major Facilitator Superfamily CV094_07005 PF07517 SecA DEAD-like domain CV094_07005 PF01043 SecA preprotein cross-linking domain CV094_07005 PF07516 SecA Wing and Scaffold domain CV094_07005 PF02810 SEC-C motif CV094_07010 PF00578 AhpC/TSA family CV094_07010 PF10417 C-terminal domain of 1-Cys peroxiredoxin CV094_07015 PF00753 Metallo-beta-lactamase superfamily CV094_07030 PF02875 Mur ligase family, glutamate ligase domain CV094_07030 PF08245 Mur ligase middle domain CV094_07035 PF01039 Carboxyl transferase domain CV094_07040 PF00290 Tryptophan synthase alpha chain CV094_07065 PF00291 Pyridoxal-phosphate dependent enzyme CV094_07070 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CV094_07075 PF07715 TonB-dependent Receptor Plug Domain CV094_07075 PF00593 TonB dependent receptor CV094_07080 PF01923 Cobalamin adenosyltransferase CV094_07100 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CV094_07105 PF00072 Response regulator receiver domain CV094_07105 PF00486 Transcriptional regulatory protein, C terminal CV094_07110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_07110 PF00672 HAMP domain CV094_07110 PF00512 His Kinase A (phospho-acceptor) domain CV094_07120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_07120 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_07120 PF12806 Acetyl-CoA dehydrogenase C-terminal like CV094_07120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_07125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_07125 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_07125 PF12806 Acetyl-CoA dehydrogenase C-terminal like CV094_07125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_07130 PF03466 LysR substrate binding domain CV094_07130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_07135 PF00043 Glutathione S-transferase, C-terminal domain CV094_07135 PF02798 Glutathione S-transferase, N-terminal domain CV094_07140 PF06146 Phosphate-starvation-inducible E CV094_07160 PF07715 TonB-dependent Receptor Plug Domain CV094_07160 PF00593 TonB dependent receptor CV094_07170 PF01336 OB-fold nucleic acid binding domain CV094_07170 PF02938 GAD domain CV094_07170 PF00152 tRNA synthetases class II (D, K and N) CV094_07175 PF17102 Stealth protein CR3, conserved region 3 CV094_07175 PF11380 Stealth protein CR2, conserved region 2 CV094_07175 PF17101 Stealth protein CR1, conserved region 1 CV094_07200 PF00534 Glycosyl transferases group 1 CV094_07200 PF13439 Glycosyltransferase Family 4 CV094_07205 PF00535 Glycosyl transferase family 2 CV094_07210 PF01522 Polysaccharide deacetylase CV094_07225 PF01063 Amino-transferase class IV CV094_07230 PF03710 Glutamate-ammonia ligase adenylyltransferase CV094_07230 PF08335 GlnD PII-uridylyltransferase CV094_07235 PF00512 His Kinase A (phospho-acceptor) domain CV094_07235 PF07689 KaiB domain CV094_07235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_07245 PF02547 Queuosine biosynthesis protein CV094_07260 PF01702 Queuine tRNA-ribosyltransferase CV094_07265 PF02699 Preprotein translocase subunit CV094_07270 PF13721 SecD export protein N-terminal TM region CV094_07270 PF07549 SecD/SecF GG Motif CV094_07270 PF02355 Protein export membrane protein CV094_07275 PF07549 SecD/SecF GG Motif CV094_07275 PF02355 Protein export membrane protein CV094_07280 PF04127 DNA / pantothenate metabolism flavoprotein CV094_07280 PF02441 Flavoprotein CV094_07285 PF04002 RadC-like JAB domain CV094_07290 PF01062 Bestrophin, RFP-TM, chloride channel CV094_07295 PF02811 PHP domain CV094_07300 PF04279 Intracellular septation protein A CV094_07305 PF03795 YCII-related domain CV094_07315 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CV094_07315 PF01266 FAD dependent oxidoreductase CV094_07325 PF04461 Protein of unknown function (DUF520) CV094_07335 PF03061 Thioesterase superfamily CV094_07340 PF00085 Thioredoxin CV094_07345 PF00561 alpha/beta hydrolase fold CV094_07350 PF04273 Putative phosphatase (DUF442) CV094_07350 PF00753 Metallo-beta-lactamase superfamily CV094_07360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_07360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CV094_07395 PF00990 Diguanylate cyclase, GGDEF domain CV094_07395 PF17152 Periplasmic sensor domain CV094_07400 PF00691 OmpA family CV094_07400 PF01389 OmpA-like transmembrane domain CV094_07405 PF00149 Calcineurin-like phosphoesterase CV094_07405 PF10518 TAT (twin-arginine translocation) pathway signal sequence CV094_07410 PF13091 PLD-like domain CV094_07420 PF16360 GTP-binding GTPase Middle Region CV094_07420 PF13167 GTP-binding GTPase N-terminal CV094_07420 PF01926 50S ribosome-binding GTPase CV094_07440 PF00149 Calcineurin-like phosphoesterase CV094_07445 PF00398 Ribosomal RNA adenine dimethylase CV094_07450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CV094_07455 PF00572 Ribosomal protein L13 CV094_07460 PF00380 Ribosomal protein S9/S16 CV094_07465 PF13417 Glutathione S-transferase, N-terminal domain CV094_07465 PF00043 Glutathione S-transferase, C-terminal domain CV094_07470 PF04386 Stringent starvation protein B CV094_07480 PF00289 Biotin carboxylase, N-terminal domain CV094_07480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CV094_07480 PF00364 Biotin-requiring enzyme CV094_07480 PF02785 Biotin carboxylase C-terminal domain CV094_07490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_07490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_07490 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_07495 PF01039 Carboxyl transferase domain CV094_07510 PF00440 Bacterial regulatory proteins, tetR family CV094_07510 PF17932 Tetracyclin repressor-like, C-terminal domain CV094_07515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_07515 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_07515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_07560 PF01066 CDP-alcohol phosphatidyltransferase CV094_07565 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CV094_07585 PF00056 lactate/malate dehydrogenase, NAD binding domain CV094_07585 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CV094_07595 PF10145 Phage-related minor tail protein CV094_07595 PF01551 Peptidase family M23 CV094_07595 PF01464 Transglycosylase SLT domain CV094_07600 PF01938 TRAM domain CV094_07600 PF04055 Radical SAM superfamily CV094_07600 PF00919 Uncharacterized protein family UPF0004 CV094_07605 PF02562 PhoH-like protein CV094_07610 PF02130 Uncharacterized protein family UPF0054 CV094_07635 PF03358 NADPH-dependent FMN reductase CV094_07640 PF03631 Virulence factor BrkB CV094_07645 PF00892 EamA-like transporter family CV094_07650 PF12833 Helix-turn-helix domain CV094_07655 PF01557 Fumarylacetoacetate (FAA) hydrolase family CV094_07700 PF00773 RNB domain CV094_07700 PF17876 Cold shock domain CV094_07700 PF08206 Ribonuclease B OB domain CV094_07700 PF08461 Ribonuclease R winged-helix domain CV094_07700 PF00575 S1 RNA binding domain CV094_07705 PF01432 Peptidase family M3 CV094_07710 PF09526 Probable metal-binding protein (DUF2387) CV094_07740 PF03937 Flavinator of succinate dehydrogenase CV094_07745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_07745 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_07745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_07750 PF00743 Flavin-binding monooxygenase-like CV094_07755 PF01196 Ribosomal protein L17 CV094_07760 PF01000 RNA polymerase Rpb3/RpoA insert domain CV094_07760 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CV094_07760 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CV094_07765 PF00163 Ribosomal protein S4/S9 N-terminal domain CV094_07765 PF01479 S4 domain CV094_07770 PF00411 Ribosomal protein S11 CV094_07775 PF00416 Ribosomal protein S13/S18 CV094_07780 PF00444 Ribosomal protein L36 CV094_07785 PF00344 SecY translocase CV094_07790 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CV094_07795 PF00327 Ribosomal protein L30p/L7e CV094_07800 PF00333 Ribosomal protein S5, N-terminal domain CV094_07800 PF03719 Ribosomal protein S5, C-terminal domain CV094_07805 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CV094_07810 PF00347 Ribosomal protein L6 CV094_07815 PF00410 Ribosomal protein S8 CV094_07820 PF00253 Ribosomal protein S14p/S29e CV094_07825 PF00673 ribosomal L5P family C-terminus CV094_07825 PF00281 Ribosomal protein L5 CV094_07830 PF00467 KOW motif CV094_07830 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CV094_07835 PF00238 Ribosomal protein L14p/L23e CV094_07840 PF00366 Ribosomal protein S17 CV094_07845 PF00831 Ribosomal L29 protein CV094_07850 PF00252 Ribosomal protein L16p/L10e CV094_07855 PF07650 KH domain CV094_07855 PF00189 Ribosomal protein S3, C-terminal domain CV094_07860 PF00237 Ribosomal protein L22p/L17e CV094_07865 PF00203 Ribosomal protein S19 CV094_07870 PF03947 Ribosomal Proteins L2, C-terminal domain CV094_07870 PF00181 Ribosomal Proteins L2, RNA binding domain CV094_07875 PF00276 Ribosomal protein L23 CV094_07880 PF00573 Ribosomal protein L4/L1 family CV094_07885 PF00297 Ribosomal protein L3 CV094_07890 PF00338 Ribosomal protein S10p/S20e CV094_07895 PF00117 Glutamine amidotransferase class-I CV094_07900 PF01053 Cys/Met metabolism PLP-dependent enzyme CV094_07905 PF05872 Bacterial protein of unknown function (DUF853) CV094_07910 PF00175 Oxidoreductase NAD-binding domain CV094_07910 PF00042 Globin CV094_07910 PF00970 Oxidoreductase FAD-binding domain CV094_07915 PF02082 Transcriptional regulator CV094_07920 PF01926 50S ribosome-binding GTPase CV094_07930 PF00375 Sodium:dicarboxylate symporter family CV094_07940 PF01553 Acyltransferase CV094_07955 PF00271 Helicase conserved C-terminal domain CV094_07955 PF00270 DEAD/DEAH box helicase CV094_07955 PF17191 RecG wedge domain CV094_07960 PF00156 Phosphoribosyl transferase domain CV094_07965 PF00293 NUDIX domain CV094_07970 PF03641 Possible lysine decarboxylase CV094_07975 PF01544 CorA-like Mg2+ transporter protein CV094_07985 PF05494 MlaC protein CV094_07995 PF02405 Permease MlaE CV094_08000 PF00005 ABC transporter CV094_08005 PF00271 Helicase conserved C-terminal domain CV094_08005 PF03880 DbpA RNA binding domain CV094_08005 PF00270 DEAD/DEAH box helicase CV094_08005 PF12343 Cold shock protein DEAD box A CV094_08010 PF00459 Inositol monophosphatase family CV094_08015 PF02779 Transketolase, pyrimidine binding domain CV094_08015 PF02780 Transketolase, C-terminal domain CV094_08015 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CV094_08020 PF00925 GTP cyclohydrolase II CV094_08025 PF01218 Coproporphyrinogen III oxidase CV094_08030 PF01488 Shikimate / quinate 5-dehydrogenase CV094_08030 PF08501 Shikimate dehydrogenase substrate binding domain CV094_08030 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CV094_08040 PF12806 Acetyl-CoA dehydrogenase C-terminal like CV094_08040 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_08040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_08040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_08050 PF04024 PspC domain CV094_08055 PF00571 CBS domain CV094_08080 PF02091 Glycyl-tRNA synthetase alpha subunit CV094_08085 PF02092 Glycyl-tRNA synthetase beta subunit CV094_08085 PF05746 DALR anticodon binding domain CV094_08095 PF00892 EamA-like transporter family CV094_08100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_08100 PF03466 LysR substrate binding domain CV094_08130 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CV094_08135 PF04996 Succinylarginine dihydrolase CV094_08140 PF00171 Aldehyde dehydrogenase family CV094_08145 PF04958 Arginine N-succinyltransferase beta subunit CV094_08150 PF00202 Aminotransferase class-III CV094_08155 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CV094_08155 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CV094_08160 PF00324 Amino acid permease CV094_08190 PF13614 AAA domain CV094_08195 PF01594 AI-2E family transporter CV094_08200 PF00080 Copper/zinc superoxide dismutase (SODC) CV094_08205 PF12805 FUSC-like inner membrane protein yccS CV094_08210 PF07690 Major Facilitator Superfamily CV094_08220 PF02525 Flavodoxin-like fold CV094_08225 PF03992 Antibiotic biosynthesis monooxygenase CV094_08235 PF02913 FAD linked oxidases, C-terminal domain CV094_08235 PF01565 FAD binding domain CV094_08240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CV094_08240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CV094_08245 PF00892 EamA-like transporter family CV094_08250 PF00892 EamA-like transporter family CV094_08260 PF01925 Sulfite exporter TauE/SafE CV094_08265 PF09157 Pseudouridine synthase II TruB, C-terminal CV094_08265 PF01509 TruB family pseudouridylate synthase (N terminal domain) CV094_08265 PF16198 tRNA pseudouridylate synthase B C-terminal domain CV094_08270 PF03280 Proteobacterial lipase chaperone protein CV094_08275 PF00561 alpha/beta hydrolase fold CV094_08280 PF01245 Ribosomal protein L19 CV094_08285 PF01746 tRNA (Guanine-1)-methyltransferase CV094_08290 PF05239 PRC-barrel domain CV094_08290 PF01782 RimM N-terminal domain CV094_08295 PF00886 Ribosomal protein S16 CV094_08335 PF02401 LytB protein CV094_08340 PF00625 Guanylate kinase CV094_08345 PF01192 RNA polymerase Rpb6 CV094_08355 PF02824 TGS domain CV094_08355 PF04607 Region found in RelA / SpoT proteins CV094_08355 PF13291 ACT domain CV094_08360 PF01042 Endoribonuclease L-PSP CV094_08365 PF04324 BFD-like [2Fe-2S] binding domain CV094_08370 PF00210 Ferritin-like domain CV094_08375 PF15864 Protein glycosylation ligase CV094_08375 PF04932 O-Antigen ligase CV094_08375 PF11846 Virulence factor membrane-bound polymerase, C-terminal CV094_08385 PF07963 Prokaryotic N-terminal methylation motif CV094_08385 PF00114 Pilin (bacterial filament) CV094_08395 PF04536 TPM domain CV094_08400 PF04011 LemA family CV094_08410 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_08410 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CV094_08415 PF01493 GXGXG motif CV094_08415 PF01645 Conserved region in glutamate synthase CV094_08415 PF00310 Glutamine amidotransferases class-II CV094_08415 PF04898 Glutamate synthase central domain CV094_08425 PF01761 3-dehydroquinate synthase CV094_08430 PF01202 Shikimate kinase CV094_08435 PF11741 AMIN domain CV094_08435 PF03958 Bacterial type II/III secretion system short domain CV094_08435 PF07660 Secretin and TonB N terminus short domain CV094_08435 PF00263 Bacterial type II and III secretion system protein CV094_08460 PF17092 Penicillin-binding protein OB-like domain CV094_08460 PF00905 Penicillin binding protein transpeptidase domain CV094_08460 PF00912 Transglycosylase CV094_08465 PF13847 Methyltransferase domain CV094_08475 PF00953 Glycosyl transferase family 4 CV094_08480 PF02875 Mur ligase family, glutamate ligase domain CV094_08480 PF08245 Mur ligase middle domain CV094_08480 PF01225 Mur ligase family, catalytic domain CV094_08485 PF02875 Mur ligase family, glutamate ligase domain CV094_08485 PF08245 Mur ligase middle domain CV094_08485 PF01225 Mur ligase family, catalytic domain CV094_08490 PF03717 Penicillin-binding Protein dimerisation domain CV094_08490 PF00905 Penicillin binding protein transpeptidase domain CV094_08500 PF01795 MraW methylase family CV094_08515 PF00749 tRNA synthetases class I (E and Q), catalytic domain CV094_08530 PF00324 Amino acid permease CV094_08560 PF01545 Cation efflux family CV094_08565 PF00873 AcrB/AcrD/AcrF family CV094_08570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV094_08570 PF00529 HlyD membrane-fusion protein of T1SS CV094_08590 PF04191 Phospholipid methyltransferase CV094_08615 PF12848 ABC transporter CV094_08615 PF00005 ABC transporter CV094_08620 PF01053 Cys/Met metabolism PLP-dependent enzyme CV094_08625 PF00106 short chain dehydrogenase CV094_08630 PF00916 Sulfate permease family CV094_08630 PF01740 STAS domain CV094_08635 PF09371 Tex-like protein N-terminal domain CV094_08635 PF17674 HHH domain CV094_08635 PF16921 Tex protein YqgF-like domain CV094_08635 PF00575 S1 RNA binding domain CV094_08640 PF00486 Transcriptional regulatory protein, C terminal CV094_08640 PF00072 Response regulator receiver domain CV094_08645 PF00672 HAMP domain CV094_08645 PF00512 His Kinase A (phospho-acceptor) domain CV094_08645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_08655 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CV094_08655 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CV094_08660 PF00583 Acetyltransferase (GNAT) family CV094_08680 PF00475 Imidazoleglycerol-phosphate dehydratase CV094_08685 PF00117 Glutamine amidotransferase class-I CV094_08700 PF00977 Histidine biosynthesis protein CV094_08715 PF03992 Antibiotic biosynthesis monooxygenase CV094_08730 PF01636 Phosphotransferase enzyme family CV094_08735 PF00977 Histidine biosynthesis protein CV094_08750 PF00230 Major intrinsic protein CV094_08775 PF02705 K+ potassium transporter CV094_08795 PF02525 Flavodoxin-like fold CV094_08805 PF01638 HxlR-like helix-turn-helix CV094_08835 PF02311 AraC-like ligand binding domain CV094_08835 PF12833 Helix-turn-helix domain CV094_08840 PF00248 Aldo/keto reductase family CV094_08860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_08860 PF03466 LysR substrate binding domain CV094_08865 PF07690 Major Facilitator Superfamily CV094_08885 PF01593 Flavin containing amine oxidoreductase CV094_08890 PF02678 Pirin CV094_08890 PF05726 Pirin C-terminal cupin domain CV094_08895 PF00857 Isochorismatase family CV094_08900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_08905 PF00171 Aldehyde dehydrogenase family CV094_08910 PF00202 Aminotransferase class-III CV094_08915 PF00392 Bacterial regulatory proteins, gntR family CV094_08915 PF00155 Aminotransferase class I and II CV094_08920 PF00324 Amino acid permease CV094_08930 PF03591 AzlC protein CV094_08940 PF00436 Single-strand binding protein family CV094_08945 PF07690 Major Facilitator Superfamily CV094_08955 PF02581 Thiamine monophosphate synthase CV094_08955 PF08543 Phosphomethylpyrimidine kinase CV094_08955 PF03070 TENA/THI-4/PQQC family CV094_08960 PF06942 GlpM protein CV094_08970 PF00107 Zinc-binding dehydrogenase CV094_08970 PF08240 Alcohol dehydrogenase GroES-like domain CV094_08975 PF00440 Bacterial regulatory proteins, tetR family CV094_08975 PF16925 Tetracyclin repressor-like, C-terminal domain CV094_08980 PF17760 UvrA interaction domain CV094_08980 PF17755 UvrA DNA-binding domain CV094_08980 PF00005 ABC transporter CV094_08990 PF00990 Diguanylate cyclase, GGDEF domain CV094_08990 PF17158 Membrane-associated sensor, integral membrane domain CV094_09000 PF02028 BCCT, betaine/carnitine/choline family transporter CV094_09010 PF00474 Sodium:solute symporter family CV094_09015 PF04341 Protein of unknown function, DUF485 CV094_09020 PF00072 Response regulator receiver domain CV094_09020 PF01627 Hpt domain CV094_09020 PF00512 His Kinase A (phospho-acceptor) domain CV094_09020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_09020 PF00672 HAMP domain CV094_09030 PF00196 Bacterial regulatory proteins, luxR family CV094_09030 PF00072 Response regulator receiver domain CV094_09035 PF03358 NADPH-dependent FMN reductase CV094_09040 PF00296 Luciferase-like monooxygenase CV094_09045 PF00872 Transposase, Mutator family CV094_09050 PF01037 Lrp/AsnC ligand binding domain CV094_09055 PF00857 Isochorismatase family CV094_09060 PF13193 AMP-binding enzyme C-terminal domain CV094_09060 PF00501 AMP-binding enzyme CV094_09060 PF16177 Acetyl-coenzyme A synthetase N-terminus CV094_09070 PF00924 Mechanosensitive ion channel CV094_09075 PF04452 RNA methyltransferase CV094_09080 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CV094_09085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CV094_09105 PF17768 RecJ OB domain CV094_09105 PF01368 DHH family CV094_09105 PF02272 DHHA1 domain CV094_09110 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CV094_09110 PF01243 Pyridoxamine 5'-phosphate oxidase CV094_09115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CV094_09115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CV094_09115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CV094_09115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CV094_09120 PF00478 IMP dehydrogenase / GMP reductase domain CV094_09120 PF00571 CBS domain CV094_09125 PF03692 Putative zinc- or iron-chelating domain CV094_09130 PF01613 Flavin reductase like domain CV094_09130 PF00258 Flavodoxin CV094_09135 PF00593 TonB dependent receptor CV094_09135 PF07715 TonB-dependent Receptor Plug Domain CV094_09140 PF01169 Uncharacterized protein family UPF0016 CV094_09150 PF00364 Biotin-requiring enzyme CV094_09150 PF02817 e3 binding domain CV094_09150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CV094_09155 PF00456 Transketolase, thiamine diphosphate binding domain CV094_09155 PF17831 Pyruvate dehydrogenase E1 component middle domain CV094_09160 PF01551 Peptidase family M23 CV094_09170 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CV094_09175 PF12327 FtsZ family, C-terminal domain CV094_09175 PF00091 Tubulin/FtsZ family, GTPase domain CV094_09180 PF02491 SHS2 domain inserted in FTSA CV094_09185 PF03799 Cell division protein FtsQ CV094_09185 PF08478 POTRA domain, FtsQ-type CV094_09190 PF07478 D-ala D-ala ligase C-terminus CV094_09190 PF01820 D-ala D-ala ligase N-terminus CV094_09195 PF01225 Mur ligase family, catalytic domain CV094_09195 PF02875 Mur ligase family, glutamate ligase domain CV094_09195 PF08245 Mur ligase middle domain CV094_09200 PF03033 Glycosyltransferase family 28 N-terminal domain CV094_09200 PF04101 Glycosyltransferase family 28 C-terminal domain CV094_09205 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CV094_09205 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CV094_09215 PF00593 TonB dependent receptor CV094_09215 PF07715 TonB-dependent Receptor Plug Domain CV094_09220 PF00156 Phosphoribosyl transferase domain CV094_09225 PF03372 Endonuclease/Exonuclease/phosphatase family CV094_09230 PF03960 ArsC family CV094_09240 PF07859 alpha/beta hydrolase fold CV094_09245 PF07694 5TMR of 5TMR-LYT CV094_09245 PF00990 Diguanylate cyclase, GGDEF domain CV094_09250 PF11412 Disulphide bond corrector protein DsbC CV094_09250 PF02683 Cytochrome C biogenesis protein transmembrane region CV094_09280 PF00576 HIUase/Transthyretin family CV094_09285 PF00860 Permease family CV094_09295 PF01494 FAD binding domain CV094_09300 PF03561 Allantoicase repeat CV094_09305 PF04115 Ureidoglycolate lyase CV094_09310 PF00106 short chain dehydrogenase CV094_09315 PF00986 DNA gyrase B subunit, carboxyl terminus CV094_09315 PF01751 Toprim domain CV094_09315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_09315 PF00204 DNA gyrase B CV094_09320 PF05728 Uncharacterised protein family (UPF0227) CV094_09340 PF01476 LysM domain CV094_09340 PF00877 NlpC/P60 family CV094_09345 PF04717 Type VI secretion system, phage-baseplate injector CV094_09350 PF02600 Disulfide bond formation protein DsbB CV094_09355 PF04262 Glutamate-cysteine ligase CV094_09370 PF04286 Protein of unknown function (DUF445) CV094_09375 PF00155 Aminotransferase class I and II CV094_09380 PF01554 MatE CV094_09385 PF00106 short chain dehydrogenase CV094_09395 PF00486 Transcriptional regulatory protein, C terminal CV094_09395 PF00072 Response regulator receiver domain CV094_09400 PF00989 PAS fold CV094_09400 PF00512 His Kinase A (phospho-acceptor) domain CV094_09400 PF11808 Phosphate regulon sensor protein PhoR CV094_09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_09420 PF03069 Acetamidase/Formamidase family CV094_09425 PF02666 Phosphatidylserine decarboxylase CV094_09430 PF00581 Rhodanese-like domain CV094_09435 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CV094_09435 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CV094_09440 PF02580 D-Tyr-tRNA(Tyr) deacylase CV094_09470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CV094_09470 PF00925 GTP cyclohydrolase II CV094_09475 PF00885 6,7-dimethyl-8-ribityllumazine synthase CV094_09480 PF01029 NusB family CV094_09485 PF00586 AIR synthase related protein, N-terminal domain CV094_09485 PF02769 AIR synthase related protein, C-terminal domain CV094_09490 PF04608 Phosphatidylglycerophosphatase A CV094_09495 PF14602 Hexapeptide repeat of succinyl-transferase CV094_09495 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_09495 PF12804 MobA-like NTP transferase domain CV094_09500 PF01380 SIS domain CV094_09505 PF01177 Asp/Glu/Hydantoin racemase CV094_09520 PF00491 Arginase family CV094_09525 PF01979 Amidohydrolase family CV094_09530 PF00324 Amino acid permease CV094_09535 PF00221 Aromatic amino acid lyase CV094_09540 PF17391 Urocanase N-terminal domain CV094_09540 PF17392 Urocanase C-terminal domain CV094_09540 PF01175 Urocanase Rossmann-like domain CV094_09545 PF05962 HutD CV094_09550 PF07702 UTRA domain CV094_09550 PF00392 Bacterial regulatory proteins, gntR family CV094_09560 PF07683 Cobalamin synthesis protein cobW C-terminal domain CV094_09560 PF02492 CobW/HypB/UreG, nucleotide-binding domain CV094_09570 PF00324 Amino acid permease CV094_09580 PF14497 Glutathione S-transferase, C-terminal domain CV094_09580 PF02798 Glutathione S-transferase, N-terminal domain CV094_09585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CV094_09595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CV094_09600 PF04463 Protein of unknown function (DUF523) CV094_09605 PF01554 MatE CV094_09610 PF01758 Sodium Bile acid symporter family CV094_09615 PF00857 Isochorismatase family CV094_09620 PF00701 Dihydrodipicolinate synthetase family CV094_09630 PF01259 SAICAR synthetase CV094_09640 PF01226 Formate/nitrite transporter CV094_09645 PF12002 MgsA AAA+ ATPase C terminal CV094_09645 PF16193 AAA C-terminal domain CV094_09645 PF00004 ATPase family associated with various cellular activities (AAA) CV094_09650 PF07995 Glucose / Sorbosone dehydrogenase CV094_09655 PF03692 Putative zinc- or iron-chelating domain CV094_09660 PF07043 Protein of unknown function (DUF1328) CV094_09675 PF00730 HhH-GPD superfamily base excision DNA repair protein CV094_09675 PF10576 Iron-sulfur binding domain of endonuclease III CV094_09675 PF00633 Helix-hairpin-helix motif CV094_09675 PF14815 NUDIX domain CV094_09690 PF03352 Methyladenine glycosylase CV094_09695 PF08240 Alcohol dehydrogenase GroES-like domain CV094_09695 PF00107 Zinc-binding dehydrogenase CV094_09700 PF00155 Aminotransferase class I and II CV094_09700 PF00392 Bacterial regulatory proteins, gntR family CV094_09715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_09715 PF03466 LysR substrate binding domain CV094_09720 PF00248 Aldo/keto reductase family CV094_09725 PF07690 Major Facilitator Superfamily CV094_09735 PF01113 Dihydrodipicolinate reductase, N-terminus CV094_09735 PF05173 Dihydrodipicolinate reductase, C-terminus CV094_09745 PF00684 DnaJ central domain CV094_09745 PF00226 DnaJ domain CV094_09745 PF01556 DnaJ C terminal domain CV094_09755 PF00873 AcrB/AcrD/AcrF family CV094_09760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV094_09765 PF08361 MAATS-type transcriptional repressor, C-terminal region CV094_09765 PF00440 Bacterial regulatory proteins, tetR family CV094_09770 PF00311 Phosphoenolpyruvate carboxylase CV094_09775 PF00860 Permease family CV094_09780 PF03466 LysR substrate binding domain CV094_09780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_09795 PF00920 Dehydratase family CV094_09800 PF02911 Formyl transferase, C-terminal domain CV094_09800 PF00551 Formyl transferase CV094_09805 PF01189 16S rRNA methyltransferase RsmB/F CV094_09805 PF01029 NusB family CV094_09870 PF00579 tRNA synthetases class I (W and Y) CV094_09875 PF03702 Anhydro-N-acetylmuramic acid kinase CV094_09880 PF00561 alpha/beta hydrolase fold CV094_09885 PF01521 Iron-sulphur cluster biosynthesis CV094_09905 PF12848 ABC transporter CV094_09905 PF00005 ABC transporter CV094_09910 PF09335 SNARE associated Golgi protein CV094_09920 PF00986 DNA gyrase B subunit, carboxyl terminus CV094_09920 PF00204 DNA gyrase B CV094_09920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_09920 PF18053 DNA gyrase B subunit insert domain CV094_09920 PF01751 Toprim domain CV094_09925 PF02463 RecF/RecN/SMC N terminal domain CV094_09930 PF02767 DNA polymerase III beta subunit, central domain CV094_09930 PF00712 DNA polymerase III beta subunit, N-terminal domain CV094_09930 PF02768 DNA polymerase III beta subunit, C-terminal domain CV094_09935 PF11638 DnaA N-terminal domain CV094_09935 PF00308 Bacterial dnaA protein CV094_09935 PF08299 Bacterial dnaA protein helix-turn-helix CV094_09940 PF00468 Ribosomal protein L34 CV094_09945 PF00825 Ribonuclease P CV094_09950 PF01809 Putative membrane protein insertion efficiency factor CV094_09955 PF14849 YidC periplasmic domain CV094_09955 PF02096 60Kd inner membrane protein CV094_09960 PF01926 50S ribosome-binding GTPase CV094_09960 PF12631 MnmE helical domain CV094_09960 PF10396 GTP-binding protein TrmE N-terminus CV094_09965 PF02583 Metal-sensitive transcriptional repressor CV094_09970 PF16916 Dimerisation domain of Zinc Transporter CV094_09970 PF01545 Cation efflux family CV094_09975 PF13098 Thioredoxin-like domain CV094_09975 PF10411 Disulfide bond isomerase protein N-terminus CV094_09985 PF00156 Phosphoribosyl transferase domain CV094_09990 PF01979 Amidohydrolase family CV094_09995 PF00355 Rieske [2Fe-2S] domain CV094_10000 PF03738 Glutathionylspermidine synthase preATP-grasp CV094_10010 PF03741 Integral membrane protein TerC family CV094_10015 PF01569 PAP2 superfamily CV094_10025 PF01225 Mur ligase family, catalytic domain CV094_10025 PF02875 Mur ligase family, glutamate ligase domain CV094_10025 PF08245 Mur ligase middle domain CV094_10040 PF00731 AIR carboxylase CV094_10045 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CV094_10045 PF02222 ATP-grasp domain CV094_10050 PF13406 Transglycosylase SLT domain CV094_10070 PF00012 Hsp70 protein CV094_10075 PF01025 GrpE CV094_10100 PF07859 alpha/beta hydrolase fold CV094_10105 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CV094_10145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CV094_10150 PF01252 Signal peptidase (SPase) II CV094_10155 PF08264 Anticodon-binding domain of tRNA CV094_10155 PF00133 tRNA synthetases class I (I, L, M and V) CV094_10155 PF06827 Zinc finger found in FPG and IleRS CV094_10160 PF06574 FAD synthetase CV094_10160 PF01687 Riboflavin kinase CV094_10170 PF01048 Phosphorylase superfamily CV094_10175 PF00440 Bacterial regulatory proteins, tetR family CV094_10175 PF08362 YcdC-like protein, C-terminal region CV094_10180 PF00005 ABC transporter CV094_10185 PF00528 Binding-protein-dependent transport system inner membrane component CV094_10195 PF09084 NMT1/THI5 like CV094_10200 PF09084 NMT1/THI5 like CV094_10205 PF00583 Acetyltransferase (GNAT) family CV094_10205 PF00696 Amino acid kinase family CV094_10220 PF00106 short chain dehydrogenase CV094_10225 PF13419 Haloacid dehalogenase-like hydrolase CV094_10235 PF01323 DSBA-like thioredoxin domain CV094_10240 PF00440 Bacterial regulatory proteins, tetR family CV094_10240 PF08360 QacR-like protein, C-terminal region CV094_10245 PF00440 Bacterial regulatory proteins, tetR family CV094_10250 PF00175 Oxidoreductase NAD-binding domain CV094_10255 PF00487 Fatty acid desaturase CV094_10260 PF03725 3' exoribonuclease family, domain 2 CV094_10260 PF01138 3' exoribonuclease family, domain 1 CV094_10280 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CV094_10280 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CV094_10285 PF01510 N-acetylmuramoyl-L-alanine amidase CV094_10290 PF03023 Lipid II flippase MurJ CV094_10295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CV094_10295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CV094_10300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CV094_10300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CV094_10305 PF13614 AAA domain CV094_10305 PF02706 Chain length determinant protein CV094_10305 PF13807 G-rich domain on putative tyrosine kinase CV094_10310 PF01451 Low molecular weight phosphotyrosine protein phosphatase CV094_10315 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CV094_10315 PF10531 SLBB domain CV094_10315 PF02563 Polysaccharide biosynthesis/export protein CV094_10320 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CV094_10320 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CV094_10320 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CV094_10325 PF01370 NAD dependent epimerase/dehydratase family CV094_10335 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_10355 PF08485 Polysaccharide biosynthesis protein C-terminal CV094_10355 PF02719 Polysaccharide biosynthesis protein CV094_10360 PF01370 NAD dependent epimerase/dehydratase family CV094_10365 PF02350 UDP-N-acetylglucosamine 2-epimerase CV094_10370 PF13579 Glycosyl transferase 4-like domain CV094_10375 PF01370 NAD dependent epimerase/dehydratase family CV094_10380 PF00953 Glycosyl transferase family 4 CV094_10385 PF02397 Bacterial sugar transferase CV094_10390 PF00483 Nucleotidyl transferase CV094_10395 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CV094_10395 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CV094_10395 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CV094_10400 PF00342 Phosphoglucose isomerase CV094_10405 PF16363 GDP-mannose 4,6 dehydratase CV094_10410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CV094_10410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CV094_10410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CV094_10410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CV094_10415 PF02652 L-lactate permease CV094_10420 PF00392 Bacterial regulatory proteins, gntR family CV094_10420 PF07729 FCD domain CV094_10425 PF01070 FMN-dependent dehydrogenase CV094_10430 PF09330 D-lactate dehydrogenase, membrane binding CV094_10430 PF01565 FAD binding domain CV094_10435 PF00155 Aminotransferase class I and II CV094_10445 PF07729 FCD domain CV094_10445 PF00392 Bacterial regulatory proteins, gntR family CV094_10455 PF00285 Citrate synthase, C-terminal domain CV094_10460 PF00694 Aconitase C-terminal domain CV094_10460 PF00330 Aconitase family (aconitate hydratase) CV094_10500 PF02801 Beta-ketoacyl synthase, C-terminal domain CV094_10500 PF00109 Beta-ketoacyl synthase, N-terminal domain CV094_10530 PF00849 RNA pseudouridylate synthase CV094_10545 PF07715 TonB-dependent Receptor Plug Domain CV094_10545 PF00593 TonB dependent receptor CV094_10555 PF01037 Lrp/AsnC ligand binding domain CV094_10560 PF01266 FAD dependent oxidoreductase CV094_10565 PF00842 Alanine racemase, C-terminal domain CV094_10565 PF01168 Alanine racemase, N-terminal domain CV094_10570 PF01042 Endoribonuclease L-PSP CV094_10575 PF00324 Amino acid permease CV094_10580 PF00324 Amino acid permease CV094_10590 PF00171 Aldehyde dehydrogenase family CV094_10595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CV094_10595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CV094_10600 PF13193 AMP-binding enzyme C-terminal domain CV094_10600 PF00501 AMP-binding enzyme CV094_10605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_10605 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_10605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_10610 PF00378 Enoyl-CoA hydratase/isomerase CV094_10615 PF00378 Enoyl-CoA hydratase/isomerase CV094_10620 PF07690 Major Facilitator Superfamily CV094_10620 PF00083 Sugar (and other) transporter CV094_10625 PF00765 Autoinducer synthase CV094_10635 PF03472 Autoinducer binding domain CV094_10635 PF00196 Bacterial regulatory proteins, luxR family CV094_10640 PF13737 Transposase DDE domain CV094_10645 PF00501 AMP-binding enzyme CV094_10650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_10650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_10650 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_10655 PF00550 Phosphopantetheine attachment site CV094_10655 PF02801 Beta-ketoacyl synthase, C-terminal domain CV094_10655 PF14765 Polyketide synthase dehydratase CV094_10655 PF16197 Ketoacyl-synthetase C-terminal extension CV094_10655 PF00975 Thioesterase domain CV094_10655 PF00109 Beta-ketoacyl synthase, N-terminal domain CV094_10655 PF08242 Methyltransferase domain CV094_10660 PF00975 Thioesterase domain CV094_10660 PF00550 Phosphopantetheine attachment site CV094_10660 PF00501 AMP-binding enzyme CV094_10660 PF13193 AMP-binding enzyme C-terminal domain CV094_10660 PF00668 Condensation domain CV094_10675 PF16363 GDP-mannose 4,6 dehydratase CV094_10680 PF01648 4'-phosphopantetheinyl transferase superfamily CV094_10695 PF01722 BolA-like protein CV094_10705 PF13614 AAA domain CV094_10720 PF09335 SNARE associated Golgi protein CV094_10725 PF07681 DoxX CV094_10730 PF04286 Protein of unknown function (DUF445) CV094_10735 PF02540 NAD synthase CV094_10735 PF00117 Glutamine amidotransferase class-I CV094_10735 PF00958 GMP synthase C terminal domain CV094_10740 PF01909 Nucleotidyltransferase domain CV094_10740 PF13427 Domain of unknown function (DUF4111) CV094_10745 PF03551 Transcriptional regulator PadR-like family CV094_10755 PF05726 Pirin C-terminal cupin domain CV094_10755 PF02678 Pirin CV094_10775 PF05746 DALR anticodon binding domain CV094_10775 PF03485 Arginyl tRNA synthetase N terminal domain CV094_10775 PF00750 tRNA synthetases class I (R) CV094_10780 PF00390 Malic enzyme, N-terminal domain CV094_10780 PF03949 Malic enzyme, NAD binding domain CV094_10785 PF04261 Dyp-type peroxidase family CV094_10790 PF01810 LysE type translocator CV094_10795 PF00950 ABC 3 transport family CV094_10800 PF00005 ABC transporter CV094_10820 PF00119 ATP synthase A chain CV094_10825 PF00137 ATP synthase subunit C CV094_10830 PF00430 ATP synthase B/B' CF(0) CV094_10835 PF00213 ATP synthase delta (OSCP) subunit CV094_10840 PF02874 ATP synthase alpha/beta family, beta-barrel domain CV094_10840 PF00306 ATP synthase alpha/beta chain, C terminal domain CV094_10840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CV094_10845 PF00231 ATP synthase CV094_10850 PF02874 ATP synthase alpha/beta family, beta-barrel domain CV094_10850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CV094_10855 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CV094_10865 PF00255 Glutathione peroxidase CV094_10875 PF07690 Major Facilitator Superfamily CV094_10880 PF00440 Bacterial regulatory proteins, tetR family CV094_10885 PF00892 EamA-like transporter family CV094_10890 PF01300 Telomere recombination CV094_10895 PF02481 DNA recombination-mediator protein A CV094_10895 PF17782 DprA winged helix domain CV094_10905 PF01327 Polypeptide deformylase CV094_10930 PF00440 Bacterial regulatory proteins, tetR family CV094_10965 PF00291 Pyridoxal-phosphate dependent enzyme CV094_10975 PF03358 NADPH-dependent FMN reductase CV094_10995 PF08497 Radical SAM N-terminal CV094_10995 PF04055 Radical SAM superfamily CV094_10995 PF11842 Domain of unknown function (DUF3362) CV094_11010 PF11798 IMS family HHH motif CV094_11010 PF00817 impB/mucB/samB family CV094_11010 PF11799 impB/mucB/samB family C-terminal domain CV094_11020 PF07690 Major Facilitator Superfamily CV094_11025 PF03641 Possible lysine decarboxylase CV094_11030 PF03471 Transporter associated domain CV094_11030 PF03741 Integral membrane protein TerC family CV094_11035 PF02810 SEC-C motif CV094_11040 PF03458 UPF0126 domain CV094_11045 PF07690 Major Facilitator Superfamily CV094_11050 PF00521 DNA gyrase/topoisomerase IV, subunit A CV094_11050 PF03989 DNA gyrase C-terminal domain, beta-propeller CV094_11055 PF13193 AMP-binding enzyme C-terminal domain CV094_11055 PF00501 AMP-binding enzyme CV094_11070 PF00719 Inorganic pyrophosphatase CV094_11075 PF03573 outer membrane porin, OprD family CV094_11085 PF00701 Dihydrodipicolinate synthetase family CV094_11095 PF00392 Bacterial regulatory proteins, gntR family CV094_11095 PF00155 Aminotransferase class I and II CV094_11100 PF13335 Magnesium chelatase, subunit ChlI C-terminal CV094_11100 PF01078 Magnesium chelatase, subunit ChlI CV094_11110 PF00665 Integrase core domain CV094_11140 PF00582 Universal stress protein family CV094_11145 PF01740 STAS domain CV094_11145 PF00916 Sulfate permease family CV094_11155 PF13335 Magnesium chelatase, subunit ChlI C-terminal CV094_11155 PF01078 Magnesium chelatase, subunit ChlI CV094_11165 PF00543 Nitrogen regulatory protein P-II CV094_11170 PF00909 Ammonium Transporter Family CV094_11175 PF03477 ATP cone domain CV094_11180 PF01872 RibD C-terminal domain CV094_11180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CV094_11190 PF00677 Lumazine binding domain CV094_11210 PF00883 Cytosol aminopeptidase family, catalytic domain CV094_11210 PF02789 Cytosol aminopeptidase family, N-terminal domain CV094_11220 PF03739 Lipopolysaccharide export system permease LptF/LptG CV094_11225 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CV094_11225 PF01676 Metalloenzyme superfamily CV094_11230 PF03572 Peptidase family S41 CV094_11230 PF00595 PDZ domain CV094_11235 PF00158 Sigma-54 interaction domain CV094_11235 PF00072 Response regulator receiver domain CV094_11235 PF02954 Bacterial regulatory protein, Fis family CV094_11240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_11240 PF00512 His Kinase A (phospho-acceptor) domain CV094_11245 PF00196 Bacterial regulatory proteins, luxR family CV094_11245 PF00072 Response regulator receiver domain CV094_11250 PF00768 D-alanyl-D-alanine carboxypeptidase CV094_11255 PF00291 Pyridoxal-phosphate dependent enzyme CV094_11260 PF01842 ACT domain CV094_11260 PF00742 Homoserine dehydrogenase CV094_11260 PF03447 Homoserine dehydrogenase, NAD binding domain CV094_11265 PF13098 Thioredoxin-like domain CV094_11265 PF10411 Disulfide bond isomerase protein N-terminus CV094_11270 PF00589 Phage integrase family CV094_11270 PF02899 Phage integrase, N-terminal SAM-like domain CV094_11280 PF07664 Ferrous iron transport protein B C terminus CV094_11280 PF02421 Ferrous iron transport protein B CV094_11280 PF07670 Nucleoside recognition CV094_11290 PF02875 Mur ligase family, glutamate ligase domain CV094_11290 PF08245 Mur ligase middle domain CV094_11295 PF01098 Cell cycle protein CV094_11300 PF00749 tRNA synthetases class I (E and Q), catalytic domain CV094_11305 PF01258 Prokaryotic dksA/traR C4-type zinc finger CV094_11310 PF00149 Calcineurin-like phosphoesterase CV094_11315 PF00293 NUDIX domain CV094_11320 PF01964 Radical SAM ThiC family CV094_11320 PF13667 ThiC-associated domain CV094_11335 PF00892 EamA-like transporter family CV094_11340 PF02321 Outer membrane efflux protein CV094_11345 PF01895 PhoU domain CV094_11350 PF04362 Bacterial Fe(2+) trafficking CV094_11355 PF00206 Lyase CV094_11355 PF14698 Argininosuccinate lyase C-terminal CV094_11360 PF07694 5TMR of 5TMR-LYT CV094_11360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_11360 PF06580 Histidine kinase CV094_11365 PF00072 Response regulator receiver domain CV094_11365 PF04397 LytTr DNA-binding domain CV094_11370 PF03900 Porphobilinogen deaminase, C-terminal domain CV094_11370 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CV094_11395 PF00816 H-NS histone family CV094_11410 PF00263 Bacterial type II and III secretion system protein CV094_11410 PF03958 Bacterial type II/III secretion system short domain CV094_11415 PF00498 FHA domain CV094_11415 PF12401 Protein of unknown function (DUF2662) CV094_11420 PF13419 Haloacid dehalogenase-like hydrolase CV094_11425 PF00425 chorismate binding enzyme CV094_11425 PF04715 Anthranilate synthase component I, N terminal region CV094_11450 PF03143 Elongation factor Tu C-terminal domain CV094_11450 PF03144 Elongation factor Tu domain 2 CV094_11450 PF00009 Elongation factor Tu GTP binding domain CV094_11460 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CV094_11465 PF02357 Transcription termination factor nusG CV094_11465 PF00467 KOW motif CV094_11470 PF03946 Ribosomal protein L11, N-terminal domain CV094_11470 PF00298 Ribosomal protein L11, RNA binding domain CV094_11475 PF00687 Ribosomal protein L1p/L10e family CV094_11480 PF00466 Ribosomal protein L10 CV094_11485 PF16320 Ribosomal protein L7/L12 dimerisation domain CV094_11485 PF00542 Ribosomal protein L7/L12 C-terminal domain CV094_11490 PF00562 RNA polymerase Rpb2, domain 6 CV094_11490 PF04561 RNA polymerase Rpb2, domain 2 CV094_11490 PF04565 RNA polymerase Rpb2, domain 3 CV094_11490 PF10385 RNA polymerase beta subunit external 1 domain CV094_11490 PF04563 RNA polymerase beta subunit CV094_11490 PF04560 RNA polymerase Rpb2, domain 7 CV094_11495 PF04983 RNA polymerase Rpb1, domain 3 CV094_11495 PF00623 RNA polymerase Rpb1, domain 2 CV094_11495 PF04997 RNA polymerase Rpb1, domain 1 CV094_11495 PF05000 RNA polymerase Rpb1, domain 4 CV094_11495 PF04998 RNA polymerase Rpb1, domain 5 CV094_11515 PF00561 alpha/beta hydrolase fold CV094_11520 PF13726 Na+-H+ antiporter family CV094_11520 PF03553 Na+/H+ antiporter family CV094_11535 PF00183 Hsp90 protein CV094_11535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_11550 PF01323 DSBA-like thioredoxin domain CV094_11560 PF09278 MerR, DNA binding CV094_11560 PF00376 MerR family regulatory protein CV094_11580 PF02803 Thiolase, C-terminal domain CV094_11580 PF00108 Thiolase, N-terminal domain CV094_11585 PF00378 Enoyl-CoA hydratase/isomerase CV094_11585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CV094_11585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CV094_11610 PF08459 UvrC Helix-hairpin-helix N-terminal CV094_11610 PF01541 GIY-YIG catalytic domain CV094_11610 PF02151 UvrB/uvrC motif CV094_11620 PF01066 CDP-alcohol phosphatidyltransferase CV094_11625 PF02805 Metal binding domain of Ada CV094_11625 PF12833 Helix-turn-helix domain CV094_11625 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CV094_11625 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CV094_11650 PF13533 Biotin-lipoyl like CV094_11655 PF03652 Holliday junction resolvase CV094_11660 PF02622 Uncharacterized ACR, COG1678 CV094_11665 PF02463 RecF/RecN/SMC N terminal domain CV094_11675 PF06865 Pyrimidine/purine nucleoside phosphorylase CV094_11680 PF08032 RNA 2'-O ribose methyltransferase substrate binding CV094_11680 PF00588 SpoU rRNA Methylase family CV094_11690 PF01121 Dephospho-CoA kinase CV094_11695 PF01478 Type IV leader peptidase family CV094_11695 PF06750 Bacterial Peptidase A24 N-terminal domain CV094_11700 PF00482 Type II secretion system (T2SS), protein F CV094_11705 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CV094_11705 PF00437 Type II/IV secretion system protein CV094_11710 PF00121 Triosephosphate isomerase CV094_11715 PF03840 Preprotein translocase SecG subunit CV094_11735 PF02576 RimP N-terminal domain CV094_11735 PF17384 RimP C-terminal SH3 domain CV094_11740 PF00575 S1 RNA binding domain CV094_11740 PF08529 NusA N-terminal domain CV094_11740 PF13184 NusA-like KH domain CV094_11745 PF00009 Elongation factor Tu GTP binding domain CV094_11745 PF04760 Translation initiation factor IF-2, N-terminal region CV094_11745 PF08364 Bacterial translation initiation factor IF-2 associated region CV094_11745 PF11987 Translation-initiation factor 2 CV094_11750 PF02033 Ribosome-binding factor A CV094_11760 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CV094_11770 PF00361 Proton-conducting membrane transporter CV094_11775 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CV094_11780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CV094_11780 PF00361 Proton-conducting membrane transporter CV094_11780 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CV094_11780 PF13244 Domain of unknown function (DUF4040) CV094_11795 PF01502 Phosphoribosyl-AMP cyclohydrolase CV094_11800 PF01494 FAD binding domain CV094_11805 PF03109 ABC1 family CV094_11815 PF01209 ubiE/COQ5 methyltransferase family CV094_11825 PF03976 Polyphosphate kinase 2 (PPK2) CV094_11835 PF17946 RecC C-terminal domain CV094_11840 PF12705 PD-(D/E)XK nuclease superfamily CV094_11840 PF00580 UvrD/REP helicase N-terminal domain CV094_11840 PF13361 UvrD-like helicase C-terminal domain CV094_11845 PF13538 UvrD-like helicase C-terminal domain CV094_11855 PF00312 Ribosomal protein S15 CV094_11860 PF00575 S1 RNA binding domain CV094_11860 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CV094_11860 PF00013 KH domain CV094_11860 PF03725 3' exoribonuclease family, domain 2 CV094_11860 PF01138 3' exoribonuclease family, domain 1 CV094_11865 PF01544 CorA-like Mg2+ transporter protein CV094_11875 PF00226 DnaJ domain CV094_11875 PF01556 DnaJ C terminal domain CV094_11885 PF01430 Hsp33 protein CV094_11890 PF02254 TrkA-N domain CV094_11890 PF00999 Sodium/hydrogen exchanger family CV094_11895 PF00271 Helicase conserved C-terminal domain CV094_11895 PF17764 3′ DNA-binding domain (3′BD) CV094_11895 PF18074 Primosomal protein N C-terminal domain CV094_11895 PF00270 DEAD/DEAH box helicase CV094_11895 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CV094_11900 PF00482 Type II secretion system (T2SS), protein F CV094_11905 PF07963 Prokaryotic N-terminal methylation motif CV094_11905 PF08334 Type II secretion system (T2SS), protein G CV094_11915 PF01588 Putative tRNA binding domain CV094_11920 PF00795 Carbon-nitrogen hydrolase CV094_11925 PF03471 Transporter associated domain CV094_11925 PF00571 CBS domain CV094_11930 PF01206 Sulfurtransferase TusA CV094_11945 PF01177 Asp/Glu/Hydantoin racemase CV094_11955 PF00762 Ferrochelatase CV094_11960 PF00753 Metallo-beta-lactamase superfamily CV094_11965 PF03884 DNA gyrase inhibitor YacG CV094_11985 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CV094_12000 PF01197 Ribosomal protein L31 CV094_12005 PF03109 ABC1 family CV094_12010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_12010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CV094_12015 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CV094_12015 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_12015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_12020 PF01554 MatE CV094_12030 PF04055 Radical SAM superfamily CV094_12030 PF06969 HemN C-terminal domain CV094_12035 PF00106 short chain dehydrogenase CV094_12040 PF03466 LysR substrate binding domain CV094_12040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_12055 PF13193 AMP-binding enzyme C-terminal domain CV094_12055 PF00501 AMP-binding enzyme CV094_12060 PF10150 Ribonuclease E/G family CV094_12060 PF12111 Polyribonucleotide phosphorylase C terminal CV094_12060 PF00575 S1 RNA binding domain CV094_12070 PF01479 S4 domain CV094_12070 PF00849 RNA pseudouridylate synthase CV094_12075 PF13419 Haloacid dehalogenase-like hydrolase CV094_12080 PF08279 HTH domain CV094_12080 PF13280 WYL domain CV094_12085 PF02798 Glutathione S-transferase, N-terminal domain CV094_12095 PF03466 LysR substrate binding domain CV094_12095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_12100 PF12706 Beta-lactamase superfamily domain CV094_12105 PF00141 Peroxidase CV094_12110 PF01590 GAF domain CV094_12110 PF05524 PEP-utilising enzyme, N-terminal CV094_12110 PF00391 PEP-utilising enzyme, mobile domain CV094_12110 PF02896 PEP-utilising enzyme, TIM barrel domain CV094_12115 PF00293 NUDIX domain CV094_12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_12135 PF03466 LysR substrate binding domain CV094_12145 PF00330 Aconitase family (aconitate hydratase) CV094_12150 PF00694 Aconitase C-terminal domain CV094_12160 PF00180 Isocitrate/isopropylmalate dehydrogenase CV094_12175 PF01176 Translation initiation factor 1A / IF-1 CV094_12185 PF01416 tRNA pseudouridine synthase CV094_12205 PF02774 Semialdehyde dehydrogenase, dimerisation domain CV094_12205 PF01118 Semialdehyde dehydrogenase, NAD binding domain CV094_12215 PF00375 Sodium:dicarboxylate symporter family CV094_12225 PF03279 Bacterial lipid A biosynthesis acyltransferase CV094_12230 PF01810 LysE type translocator CV094_12245 PF00107 Zinc-binding dehydrogenase CV094_12245 PF08240 Alcohol dehydrogenase GroES-like domain CV094_12250 PF01638 HxlR-like helix-turn-helix CV094_12260 PF01751 Toprim domain CV094_12260 PF01131 DNA topoisomerase CV094_12260 PF08272 Topoisomerase I zinc-ribbon-like CV094_12260 PF01396 Topoisomerase DNA binding C4 zinc finger CV094_12275 PF00580 UvrD/REP helicase N-terminal domain CV094_12275 PF13361 UvrD-like helicase C-terminal domain CV094_12280 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CV094_12300 PF02254 TrkA-N domain CV094_12300 PF00999 Sodium/hydrogen exchanger family CV094_12305 PF00471 Ribosomal protein L33 CV094_12310 PF00830 Ribosomal L28 family CV094_12315 PF00171 Aldehyde dehydrogenase family CV094_12325 PF01842 ACT domain CV094_12325 PF00551 Formyl transferase CV094_12335 PF01618 MotA/TolQ/ExbB proton channel family CV094_12345 PF01625 Peptide methionine sulfoxide reductase CV094_12355 PF00186 Dihydrofolate reductase CV094_12360 PF00303 Thymidylate synthase CV094_12375 PF01790 Prolipoprotein diacylglyceryl transferase CV094_12395 PF00902 Sec-independent protein translocase protein (TatC) CV094_12400 PF02416 mttA/Hcf106 family CV094_12405 PF02416 mttA/Hcf106 family CV094_12415 PF01725 Ham1 family CV094_12425 PF00561 alpha/beta hydrolase fold CV094_12425 PF07021 Methionine biosynthesis protein MetW CV094_12430 PF00561 alpha/beta hydrolase fold CV094_12435 PF00682 HMGL-like CV094_12435 PF08502 LeuA allosteric (dimerisation) domain CV094_12440 PF18331 PKHD-type hydroxylase C-terminal domain CV094_12440 PF13640 2OG-Fe(II) oxygenase superfamily CV094_12445 PF07715 TonB-dependent Receptor Plug Domain CV094_12445 PF00593 TonB dependent receptor CV094_12450 PF05698 Bacterial trigger factor protein (TF) C-terminus CV094_12450 PF05697 Bacterial trigger factor protein (TF) CV094_12450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CV094_12455 PF00574 Clp protease CV094_12460 PF06689 ClpX C4-type zinc finger CV094_12460 PF07724 AAA domain (Cdc48 subfamily) CV094_12460 PF10431 C-terminal, D2-small domain, of ClpB protein CV094_12475 PF05683 Fumarase C-terminus CV094_12475 PF05681 Fumarate hydratase (Fumerase) CV094_12480 PF01515 Phosphate acetyl/butaryl transferase CV094_12480 PF07085 DRTGG domain CV094_12485 PF00871 Acetokinase family CV094_12490 PF00920 Dehydratase family CV094_12495 PF01081 KDPG and KHG aldolase CV094_12500 PF02447 GntP family permease CV094_12505 PF01202 Shikimate kinase CV094_12510 PF00171 Aldehyde dehydrogenase family CV094_12515 PF00171 Aldehyde dehydrogenase family CV094_12520 PF00561 alpha/beta hydrolase fold CV094_12530 PF00933 Glycosyl hydrolase family 3 N terminal domain CV094_12535 PF03572 Peptidase family S41 CV094_12535 PF17804 Tail specific protease N-terminal domain CV094_12535 PF11818 C-terminal domain of tail specific protease (DUF3340) CV094_12535 PF00595 PDZ domain CV094_12540 PF13439 Glycosyltransferase Family 4 CV094_12540 PF00534 Glycosyl transferases group 1 CV094_12545 PF01569 PAP2 superfamily CV094_12550 PF04384 Iron-sulphur cluster assembly CV094_12555 PF00334 Nucleoside diphosphate kinase CV094_12560 PF04055 Radical SAM superfamily CV094_12570 PF13464 Domain of unknown function (DUF4115) CV094_12575 PF04551 GcpE protein CV094_12580 PF13393 Histidyl-tRNA synthetase CV094_12580 PF03129 Anticodon binding domain CV094_12590 PF13360 PQQ-like domain CV094_12595 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CV094_12595 PF01926 50S ribosome-binding GTPase CV094_12610 PF00550 Phosphopantetheine attachment site CV094_12615 PF00550 Phosphopantetheine attachment site CV094_12625 PF13193 AMP-binding enzyme C-terminal domain CV094_12625 PF00501 AMP-binding enzyme CV094_12640 PF00221 Aromatic amino acid lyase CV094_12660 PF04820 Tryptophan halogenase CV094_12670 PF00109 Beta-ketoacyl synthase, N-terminal domain CV094_12670 PF02801 Beta-ketoacyl synthase, C-terminal domain CV094_12685 PF00109 Beta-ketoacyl synthase, N-terminal domain CV094_12685 PF02801 Beta-ketoacyl synthase, C-terminal domain CV094_12700 PF02556 Preprotein translocase subunit SecB CV094_12705 PF00462 Glutaredoxin CV094_12715 PF03193 RsgA GTPase CV094_12720 PF00929 Exonuclease CV094_12735 PF02321 Outer membrane efflux protein CV094_12740 PF12704 MacB-like periplasmic core domain CV094_12740 PF02687 FtsX-like permease family CV094_12740 PF00005 ABC transporter CV094_12745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV094_12760 PF09334 tRNA synthetases class I (M) CV094_12760 PF13603 Leucyl-tRNA synthetase, Domain 2 CV094_12760 PF00133 tRNA synthetases class I (I, L, M and V) CV094_12760 PF08264 Anticodon-binding domain of tRNA CV094_12770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CV094_12770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CV094_12770 PF00205 Thiamine pyrophosphate enzyme, central domain CV094_12775 PF10369 Small subunit of acetolactate synthase CV094_12780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CV094_12780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CV094_12785 PF03707 Bacterial signalling protein N terminal repeat CV094_12785 PF00563 EAL domain CV094_12785 PF00990 Diguanylate cyclase, GGDEF domain CV094_12800 PF13737 Transposase DDE domain CV094_12815 PF16658 Class II release factor RF3, C-terminal domain CV094_12815 PF03144 Elongation factor Tu domain 2 CV094_12815 PF00009 Elongation factor Tu GTP binding domain CV094_12830 PF01026 TatD related DNase CV094_12835 PF00694 Aconitase C-terminal domain CV094_12835 PF00330 Aconitase family (aconitate hydratase) CV094_12845 PF00899 ThiF family CV094_12855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_12855 PF03466 LysR substrate binding domain CV094_12865 PF01207 Dihydrouridine synthase (Dus) CV094_12870 PF07690 Major Facilitator Superfamily CV094_12880 PF00892 EamA-like transporter family CV094_12885 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CV094_12885 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CV094_12890 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CV094_12895 PF02233 NAD(P) transhydrogenase beta subunit CV094_12900 PF00106 short chain dehydrogenase CV094_12910 PF01261 Xylose isomerase-like TIM barrel CV094_12915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CV094_12915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CV094_12920 PF00378 Enoyl-CoA hydratase/isomerase CV094_12925 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CV094_12925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_12925 PF00672 HAMP domain CV094_12925 PF01627 Hpt domain CV094_12925 PF00512 His Kinase A (phospho-acceptor) domain CV094_12925 PF00072 Response regulator receiver domain CV094_12930 PF00291 Pyridoxal-phosphate dependent enzyme CV094_12940 PF05958 tRNA (Uracil-5-)-methyltransferase CV094_12945 PF02824 TGS domain CV094_12945 PF04607 Region found in RelA / SpoT proteins CV094_12945 PF13291 ACT domain CV094_12955 PF03819 MazG nucleotide pyrophosphohydrolase domain CV094_12965 PF12627 Probable RNA and SrmB- binding site of polymerase A CV094_12965 PF12626 Polymerase A arginine-rich C-terminus CV094_12965 PF01743 Poly A polymerase head domain CV094_12970 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CV094_12975 PF02548 Ketopantoate hydroxymethyltransferase CV094_12980 PF02569 Pantoate-beta-alanine ligase CV094_12985 PF03668 P-loop ATPase protein family CV094_12990 PF00381 PTS HPr component phosphorylation site CV094_12995 PF04751 Protein of unknown function (DUF615) CV094_13000 PF00501 AMP-binding enzyme CV094_13000 PF13193 AMP-binding enzyme C-terminal domain CV094_13005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CV094_13005 PF02824 TGS domain CV094_13005 PF03129 Anticodon binding domain CV094_13005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CV094_13010 PF00707 Translation initiation factor IF-3, C-terminal domain CV094_13010 PF05198 Translation initiation factor IF-3, N-terminal domain CV094_13020 PF02798 Glutathione S-transferase, N-terminal domain CV094_13020 PF00043 Glutathione S-transferase, C-terminal domain CV094_13025 PF09335 SNARE associated Golgi protein CV094_13030 PF07690 Major Facilitator Superfamily CV094_13035 PF01632 Ribosomal protein L35 CV094_13040 PF00453 Ribosomal protein L20 CV094_13060 PF01409 tRNA synthetases class II core domain (F) CV094_13060 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CV094_13065 PF03484 tRNA synthetase B5 domain CV094_13065 PF03483 B3/4 domain CV094_13065 PF03147 Ferredoxin-fold anticodon binding domain CV094_13065 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CV094_13065 PF01588 Putative tRNA binding domain CV094_13070 PF00216 Bacterial DNA-binding protein CV094_13085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CV094_13085 PF07497 Rho termination factor, RNA-binding domain CV094_13085 PF07498 Rho termination factor, N-terminal domain CV094_13090 PF00085 Thioredoxin CV094_13095 PF02541 Ppx/GppA phosphatase family CV094_13100 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CV094_13105 PF01171 PP-loop family CV094_13105 PF09179 TilS substrate binding domain CV094_13105 PF11734 TilS substrate C-terminal domain CV094_13110 PF14748 Pyrroline-5-carboxylate reductase dimerisation CV094_13110 PF03807 NADP oxidoreductase coenzyme F420-dependent CV094_13115 PF02325 YGGT family CV094_13120 PF01367 5'-3' exonuclease, C-terminal SAM fold CV094_13120 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CV094_13120 PF00476 DNA polymerase family A CV094_13120 PF01612 3'-5' exonuclease CV094_13140 PF00437 Type II/IV secretion system protein CV094_13145 PF02566 OsmC-like protein CV094_13150 PF01047 MarR family CV094_13160 PF00795 Carbon-nitrogen hydrolase CV094_13205 PF00309 Sigma-54 factor, Activator interacting domain (AID) CV094_13205 PF04552 Sigma-54, DNA binding domain CV094_13205 PF04963 Sigma-54 factor, core binding domain CV094_13210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CV094_13215 PF01722 BolA-like protein CV094_13220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CV094_13225 PF01634 ATP phosphoribosyltransferase CV094_13230 PF00815 Histidinol dehydrogenase CV094_13235 PF00155 Aminotransferase class I and II CV094_13240 PF00425 chorismate binding enzyme CV094_13240 PF04715 Anthranilate synthase component I, N terminal region CV094_13280 PF00293 NUDIX domain CV094_13285 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_13290 PF00814 Glycoprotease family CV094_13295 PF04445 Putative SAM-dependent methyltransferase CV094_13305 PF00756 Putative esterase CV094_13315 PF00834 Ribulose-phosphate 3 epimerase family CV094_13330 PF07731 Multicopper oxidase CV094_13330 PF00394 Multicopper oxidase CV094_13330 PF07732 Multicopper oxidase CV094_13335 PF05275 Copper resistance protein B precursor (CopB) CV094_13345 PF00893 Small Multidrug Resistance protein CV094_13350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CV094_13350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CV094_13355 PF01960 ArgJ family CV094_13360 PF02445 Quinolinate synthetase A protein CV094_13385 PF00962 Adenosine/AMP deaminase CV094_13390 PF00107 Zinc-binding dehydrogenase CV094_13390 PF08240 Alcohol dehydrogenase GroES-like domain CV094_13395 PF03466 LysR substrate binding domain CV094_13395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_13400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_13400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_13400 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_13405 PF07690 Major Facilitator Superfamily CV094_13410 PF02515 CoA-transferase family III CV094_13420 PF14537 Cytochrome c3 CV094_13420 PF00890 FAD binding domain CV094_13425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_13425 PF03466 LysR substrate binding domain CV094_13435 PF07690 Major Facilitator Superfamily CV094_13445 PF03466 LysR substrate binding domain CV094_13445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_13455 PF01546 Peptidase family M20/M25/M40 CV094_13455 PF07687 Peptidase dimerisation domain CV094_13460 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CV094_13460 PF12833 Helix-turn-helix domain CV094_13470 PF01810 LysE type translocator CV094_13475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_13475 PF03466 LysR substrate binding domain CV094_13485 PF08267 Cobalamin-independent synthase, N-terminal domain CV094_13485 PF01717 Cobalamin-independent synthase, Catalytic domain CV094_13490 PF01613 Flavin reductase like domain CV094_13505 PF00905 Penicillin binding protein transpeptidase domain CV094_13525 PF13614 AAA domain CV094_13530 PF10544 T5orf172 domain CV094_13570 PF02567 Phenazine biosynthesis-like protein CV094_13590 PF01011 PQQ enzyme repeat CV094_13590 PF13360 PQQ-like domain CV094_13660 PF13756 Stimulus-sensing domain CV094_13660 PF00512 His Kinase A (phospho-acceptor) domain CV094_13660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_13660 PF00672 HAMP domain CV094_13660 PF13755 Sensor N-terminal transmembrane domain CV094_13670 PF00268 Ribonucleotide reductase, small chain CV094_13680 PF03477 ATP cone domain CV094_13680 PF00317 Ribonucleotide reductase, all-alpha domain CV094_13680 PF02867 Ribonucleotide reductase, barrel domain CV094_13690 PF00072 Response regulator receiver domain CV094_13690 PF00486 Transcriptional regulatory protein, C terminal CV094_13695 PF00512 His Kinase A (phospho-acceptor) domain CV094_13695 PF00672 HAMP domain CV094_13695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_13705 PF00990 Diguanylate cyclase, GGDEF domain CV094_13705 PF17151 Periplasmic sensor domain CV094_13710 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CV094_13715 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CV094_13720 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CV094_13720 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CV094_13730 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CV094_13730 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CV094_13730 PF10531 SLBB domain CV094_13735 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CV094_13735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CV094_13735 PF00384 Molybdopterin oxidoreductase CV094_13740 PF00146 NADH dehydrogenase CV094_13745 PF12838 4Fe-4S dicluster domain CV094_13750 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CV094_13755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CV094_13760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CV094_13760 PF00361 Proton-conducting membrane transporter CV094_13765 PF00361 Proton-conducting membrane transporter CV094_13770 PF00361 Proton-conducting membrane transporter CV094_13780 PF00313 'Cold-shock' DNA-binding domain CV094_13785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_13785 PF03466 LysR substrate binding domain CV094_13790 PF00175 Oxidoreductase NAD-binding domain CV094_13790 PF00970 Oxidoreductase FAD-binding domain CV094_13805 PF05552 Conserved TM helix CV094_13820 PF00291 Pyridoxal-phosphate dependent enzyme CV094_13825 PF13533 Biotin-lipoyl like CV094_13850 PF09334 tRNA synthetases class I (M) CV094_13850 PF01588 Putative tRNA binding domain CV094_13860 PF10609 NUBPL iron-transfer P-loop NTPase CV094_13870 PF01048 Phosphorylase superfamily CV094_13885 PF00692 dUTPase CV094_13920 PF01207 Dihydrouridine synthase (Dus) CV094_13930 PF00448 SRP54-type protein, GTPase domain CV094_13930 PF02881 SRP54-type protein, helical bundle domain CV094_13930 PF02978 Signal peptide binding domain CV094_13935 PF03309 Type III pantothenate kinase CV094_13945 PF01925 Sulfite exporter TauE/SafE CV094_13955 PF06470 SMC proteins Flexible Hinge Domain CV094_13955 PF02463 RecF/RecN/SMC N terminal domain CV094_13965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CV094_13965 PF00533 BRCA1 C Terminus (BRCT) domain CV094_13965 PF12826 Helix-hairpin-helix motif CV094_13965 PF01653 NAD-dependent DNA ligase adenylation domain CV094_13965 PF03120 NAD-dependent DNA ligase OB-fold domain CV094_13970 PF00210 Ferritin-like domain CV094_13975 PF07690 Major Facilitator Superfamily CV094_13980 PF00982 Glycosyltransferase family 20 CV094_13985 PF02358 Trehalose-phosphatase CV094_13990 PF12697 Alpha/beta hydrolase family CV094_13990 PF08241 Methyltransferase domain CV094_13995 PF00202 Aminotransferase class-III CV094_13995 PF06968 Biotin and Thiamin Synthesis associated domain CV094_13995 PF04055 Radical SAM superfamily CV094_14000 PF00155 Aminotransferase class I and II CV094_14015 PF00849 RNA pseudouridylate synthase CV094_14015 PF01479 S4 domain CV094_14020 PF04079 Segregation and condensation complex subunit ScpB CV094_14025 PF02616 Segregation and condensation protein ScpA CV094_14030 PF01300 Telomere recombination CV094_14035 PF04315 Elongation factor P hydroxylase CV094_14040 PF02620 Large ribosomal RNA subunit accumulation protein YceD CV094_14045 PF01783 Ribosomal L32p protein family CV094_14050 PF00698 Acyl transferase domain CV094_14060 PF00550 Phosphopantetheine attachment site CV094_14065 PF04972 BON domain CV094_14065 PF01476 LysM domain CV094_14070 PF03070 TENA/THI-4/PQQC family CV094_14070 PF02581 Thiamine monophosphate synthase CV094_14070 PF08543 Phosphomethylpyrimidine kinase CV094_14080 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CV094_14095 PF02261 Aspartate decarboxylase CV094_14100 PF01195 Peptidyl-tRNA hydrolase CV094_14105 PF01386 Ribosomal L25p family CV094_14110 PF14572 Phosphoribosyl synthetase-associated domain CV094_14110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CV094_14135 PF00288 GHMP kinases N terminal domain CV094_14135 PF08544 GHMP kinases C terminal CV094_14140 PF03550 Outer membrane lipoprotein LolB CV094_14150 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CV094_14150 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CV094_14150 PF01488 Shikimate / quinate 5-dehydrogenase CV094_14155 PF01807 CHC2 zinc finger CV094_14155 PF08275 DNA primase catalytic core, N-terminal domain CV094_14155 PF10410 DnaB-helicase binding domain of primase CV094_14155 PF08278 DNA primase DnaG DnaB-binding CV094_14160 PF13525 Outer membrane lipoprotein CV094_14165 PF01479 S4 domain CV094_14165 PF00849 RNA pseudouridylate synthase CV094_14175 PF03358 NADPH-dependent FMN reductase CV094_14180 PF01668 SmpB protein CV094_14185 PF01467 Cytidylyltransferase-like CV094_14190 PF00037 4Fe-4S binding domain CV094_14210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_14210 PF03466 LysR substrate binding domain CV094_14215 PF00180 Isocitrate/isopropylmalate dehydrogenase CV094_14220 PF02028 BCCT, betaine/carnitine/choline family transporter CV094_14225 PF07859 alpha/beta hydrolase fold CV094_14230 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CV094_14230 PF00355 Rieske [2Fe-2S] domain CV094_14235 PF00171 Aldehyde dehydrogenase family CV094_14240 PF00970 Oxidoreductase FAD-binding domain CV094_14240 PF00111 2Fe-2S iron-sulfur cluster binding domain CV094_14240 PF00175 Oxidoreductase NAD-binding domain CV094_14255 PF00795 Carbon-nitrogen hydrolase CV094_14255 PF02540 NAD synthase CV094_14265 PF05726 Pirin C-terminal cupin domain CV094_14265 PF02678 Pirin CV094_14275 PF00109 Beta-ketoacyl synthase, N-terminal domain CV094_14275 PF02801 Beta-ketoacyl synthase, C-terminal domain CV094_14285 PF00164 Ribosomal protein S12/S23 CV094_14290 PF00177 Ribosomal protein S7p/S5e CV094_14295 PF00009 Elongation factor Tu GTP binding domain CV094_14295 PF03144 Elongation factor Tu domain 2 CV094_14295 PF14492 Elongation Factor G, domain II CV094_14295 PF03764 Elongation factor G, domain IV CV094_14295 PF00679 Elongation factor G C-terminus CV094_14300 PF03144 Elongation factor Tu domain 2 CV094_14300 PF03143 Elongation factor Tu C-terminal domain CV094_14300 PF00009 Elongation factor Tu GTP binding domain CV094_14315 PF00583 Acetyltransferase (GNAT) family CV094_14320 PF04376 Arginine-tRNA-protein transferase, N terminus CV094_14320 PF04377 Arginine-tRNA-protein transferase, C terminus CV094_14325 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CV094_14330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_14335 PF01580 FtsK/SpoIIIE family CV094_14335 PF17854 FtsK alpha domain CV094_14335 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CV094_14335 PF09397 Ftsk gamma domain CV094_14340 PF01810 LysE type translocator CV094_14360 PF03776 Septum formation topological specificity factor MinE CV094_14365 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CV094_14370 PF03775 Septum formation inhibitor MinC, C-terminal domain CV094_14380 PF01553 Acyltransferase CV094_14385 PF00691 OmpA family CV094_14385 PF13488 Glycine zipper CV094_14390 PF13361 UvrD-like helicase C-terminal domain CV094_14390 PF00580 UvrD/REP helicase N-terminal domain CV094_14395 PF00692 dUTPase CV094_14400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CV094_14400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CV094_14400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CV094_14400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CV094_14405 PF00696 Amino acid kinase family CV094_14415 PF13230 Glutamine amidotransferases class-II CV094_14420 PF01814 Hemerythrin HHE cation binding domain CV094_14435 PF03658 RnfH family Ubiquitin CV094_14440 PF04355 SmpA / OmlA family CV094_14445 PF01475 Ferric uptake regulator family CV094_14450 PF00437 Type II/IV secretion system protein CV094_14455 PF00437 Type II/IV secretion system protein CV094_14460 PF01168 Alanine racemase, N-terminal domain CV094_14470 PF00149 Calcineurin-like phosphoesterase CV094_14470 PF12320 Type 5 capsule protein repressor C-terminal domain CV094_14490 PF08338 Domain of unknown function (DUF1731) CV094_14490 PF01370 NAD dependent epimerase/dehydratase family CV094_14495 PF01266 FAD dependent oxidoreductase CV094_14500 PF00490 Delta-aminolevulinic acid dehydratase CV094_14505 PF03061 Thioesterase superfamily CV094_14510 PF13533 Biotin-lipoyl like CV094_14515 PF07690 Major Facilitator Superfamily CV094_14550 PF00929 Exonuclease CV094_14620 PF00145 C-5 cytosine-specific DNA methylase CV094_14625 PF01555 DNA methylase CV094_14650 PF01555 DNA methylase CV094_14660 PF01695 IstB-like ATP binding protein CV094_14705 PF07007 Lysozyme inhibitor LprI CV094_14855 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CV094_14895 PF02768 DNA polymerase III beta subunit, C-terminal domain CV094_14895 PF00712 DNA polymerase III beta subunit, N-terminal domain CV094_14895 PF02767 DNA polymerase III beta subunit, central domain CV094_14980 PF13438 Domain of unknown function (DUF4113) CV094_14980 PF11798 IMS family HHH motif CV094_14980 PF11799 impB/mucB/samB family C-terminal domain CV094_14980 PF00817 impB/mucB/samB family CV094_14985 PF00717 Peptidase S24-like CV094_15040 PF00083 Sugar (and other) transporter CV094_15045 PF00701 Dihydrodipicolinate synthetase family CV094_15055 PF04542 Sigma-70 region 2 CV094_15055 PF08281 Sigma-70, region 4 CV094_15065 PF07715 TonB-dependent Receptor Plug Domain CV094_15065 PF00593 TonB dependent receptor CV094_15085 PF01126 Heme oxygenase CV094_15100 PF13737 Transposase DDE domain CV094_15115 PF13520 Amino acid permease CV094_15120 PF02574 Homocysteine S-methyltransferase CV094_15130 PF06039 Malate:quinone oxidoreductase (Mqo) CV094_15135 PF00732 GMC oxidoreductase CV094_15135 PF05199 GMC oxidoreductase CV094_15140 PF00171 Aldehyde dehydrogenase family CV094_15145 PF00440 Bacterial regulatory proteins, tetR family CV094_15145 PF13977 BetI-type transcriptional repressor, C-terminal CV094_15150 PF02028 BCCT, betaine/carnitine/choline family transporter CV094_15155 PF02028 BCCT, betaine/carnitine/choline family transporter CV094_15165 PF03061 Thioesterase superfamily CV094_15175 PF07683 Cobalamin synthesis protein cobW C-terminal domain CV094_15175 PF02492 CobW/HypB/UreG, nucleotide-binding domain CV094_15180 PF00375 Sodium:dicarboxylate symporter family CV094_15185 PF07152 YaeQ protein CV094_15190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CV094_15195 PF14883 Hypothetical glycosyl hydrolase family 13 CV094_15195 PF01522 Polysaccharide deacetylase CV094_15200 PF00535 Glycosyl transferase family 2 CV094_15210 PF00378 Enoyl-CoA hydratase/isomerase CV094_15225 PF09339 IclR helix-turn-helix domain CV094_15225 PF01614 Bacterial transcriptional regulator CV094_15230 PF00355 Rieske [2Fe-2S] domain CV094_15240 PF00355 Rieske [2Fe-2S] domain CV094_15250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CV094_15255 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_15255 PF14759 Reductase C-terminal CV094_15260 PF07690 Major Facilitator Superfamily CV094_15270 PF12697 Alpha/beta hydrolase family CV094_15280 PF01958 Domain of unknown function DUF108 CV094_15280 PF03447 Homoserine dehydrogenase, NAD binding domain CV094_15285 PF00171 Aldehyde dehydrogenase family CV094_15290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CV094_15290 PF00205 Thiamine pyrophosphate enzyme, central domain CV094_15290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CV094_15300 PF07690 Major Facilitator Superfamily CV094_15305 PF01327 Polypeptide deformylase CV094_15310 PF04960 Glutaminase CV094_15315 PF12833 Helix-turn-helix domain CV094_15315 PF02311 AraC-like ligand binding domain CV094_15320 PF07690 Major Facilitator Superfamily CV094_15325 PF01263 Aldose 1-epimerase CV094_15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_15340 PF03466 LysR substrate binding domain CV094_15350 PF07690 Major Facilitator Superfamily CV094_15355 PF00456 Transketolase, thiamine diphosphate binding domain CV094_15360 PF02780 Transketolase, C-terminal domain CV094_15360 PF02779 Transketolase, pyrimidine binding domain CV094_15365 PF02574 Homocysteine S-methyltransferase CV094_15365 PF00809 Pterin binding enzyme CV094_15365 PF02310 B12 binding domain CV094_15365 PF02965 Vitamin B12 dependent methionine synthase, activation domain CV094_15365 PF02607 B12 binding domain CV094_15370 PF01384 Phosphate transporter family CV094_15375 PF00291 Pyridoxal-phosphate dependent enzyme CV094_15390 PF03781 Sulfatase-modifying factor enzyme 1 CV094_15395 PF00884 Sulfatase CV094_15405 PF01106 NifU-like domain CV094_15405 PF01521 Iron-sulphur cluster biosynthesis CV094_15410 PF00593 TonB dependent receptor CV094_15410 PF07715 TonB-dependent Receptor Plug Domain CV094_15420 PF00561 alpha/beta hydrolase fold CV094_15425 PF00484 Carbonic anhydrase CV094_15430 PF13472 GDSL-like Lipase/Acylhydrolase family CV094_15435 PF00005 ABC transporter CV094_15445 PF01694 Rhomboid family CV094_15450 PF00912 Transglycosylase CV094_15455 PF02503 Polyphosphate kinase middle domain CV094_15455 PF13090 Polyphosphate kinase C-terminal domain 2 CV094_15455 PF17941 Polyphosphate kinase C-terminal domain 1 CV094_15455 PF13089 Polyphosphate kinase N-terminal domain CV094_15465 PF03466 LysR substrate binding domain CV094_15465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_15470 PF00561 alpha/beta hydrolase fold CV094_15475 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_15475 PF18113 Rubredoxin binding C-terminal domain CV094_15480 PF00301 Rubredoxin CV094_15495 PF01336 OB-fold nucleic acid binding domain CV094_15495 PF00152 tRNA synthetases class II (D, K and N) CV094_15500 PF14052 Capsule assembly protein Wzi CV094_15510 PF01507 Phosphoadenosine phosphosulfate reductase family CV094_15515 PF00009 Elongation factor Tu GTP binding domain CV094_15530 PF03600 Citrate transporter CV094_15540 PF00571 CBS domain CV094_15540 PF03471 Transporter associated domain CV094_15540 PF01595 Cyclin M transmembrane N-terminal domain CV094_15545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_15545 PF03466 LysR substrate binding domain CV094_15550 PF00463 Isocitrate lyase family CV094_15565 PF01774 UreD urease accessory protein CV094_15570 PF00547 Urease, gamma subunit CV094_15575 PF00699 Urease beta subunit CV094_15585 PF05194 UreE urease accessory protein, C-terminal domain CV094_15585 PF02814 UreE urease accessory protein, N-terminal domain CV094_15590 PF01730 UreF CV094_15595 PF02492 CobW/HypB/UreG, nucleotide-binding domain CV094_15610 PF03717 Penicillin-binding Protein dimerisation domain CV094_15610 PF00905 Penicillin binding protein transpeptidase domain CV094_15625 PF05191 Adenylate kinase, active site lid CV094_15635 PF00730 HhH-GPD superfamily base excision DNA repair protein CV094_15635 PF00633 Helix-hairpin-helix motif CV094_15635 PF10576 Iron-sulfur binding domain of endonuclease III CV094_15640 PF04060 Putative Fe-S cluster CV094_15645 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CV094_15645 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CV094_15655 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CV094_15660 PF02590 Predicted SPOUT methyltransferase CV094_15665 PF05362 Lon protease (S16) C-terminal proteolytic domain CV094_15665 PF02190 ATP-dependent protease La (LON) substrate-binding domain CV094_15665 PF00004 ATPase family associated with various cellular activities (AAA) CV094_15680 PF01812 5-formyltetrahydrofolate cyclo-ligase family CV094_16005 PF01551 Peptidase family M23 CV094_16005 PF08525 Opacity-associated protein A N-terminal motif CV094_16005 PF01476 LysM domain CV094_16050 PF00884 Sulfatase CV094_16050 PF08019 Phosphoethanolamine transferase EptA/EptB CV094_16085 PF00557 Metallopeptidase family M24 CV094_16085 PF05195 Aminopeptidase P, N-terminal domain CV094_16090 PF01494 FAD binding domain CV094_16095 PF01494 FAD binding domain CV094_16105 PF13411 MerR HTH family regulatory protein CV094_16115 PF01810 LysE type translocator CV094_16120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_16120 PF03466 LysR substrate binding domain CV094_16130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CV094_16135 PF02021 Uncharacterised protein family UPF0102 CV094_16140 PF04972 BON domain CV094_16150 PF00293 NUDIX domain CV094_16150 PF09297 NADH pyrophosphatase zinc ribbon domain CV094_16160 PF00929 Exonuclease CV094_16165 PF01476 LysM domain CV094_16165 PF01476 LysM domain CV094_16165 PF01464 Transglycosylase SLT domain CV094_16165 PF01464 Transglycosylase SLT domain CV094_16170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CV094_16175 PF00528 Binding-protein-dependent transport system inner membrane component CV094_16180 PF00528 Binding-protein-dependent transport system inner membrane component CV094_16180 PF12911 N-terminal TM domain of oligopeptide transport permease C CV094_16185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CV094_16185 PF00005 ABC transporter CV094_16190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CV094_16190 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_16195 PF00593 TonB dependent receptor CV094_16195 PF07715 TonB-dependent Receptor Plug Domain CV094_16205 PF00929 Exonuclease CV094_16210 PF01979 Amidohydrolase family CV094_16215 PF00563 EAL domain CV094_16215 PF01590 GAF domain CV094_16215 PF00990 Diguanylate cyclase, GGDEF domain CV094_16215 PF00360 Phytochrome region CV094_16220 PF00764 Arginosuccinate synthase CV094_16225 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_16225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CV094_16240 PF05987 Bacterial protein of unknown function (DUF898) CV094_16245 PF03180 NLPA lipoprotein CV094_16260 PF13737 Transposase DDE domain CV094_16265 PF16671 Actin cross-linking domain CV094_16265 PF04717 Type VI secretion system, phage-baseplate injector CV094_16270 PF05593 RHS Repeat CV094_16270 PF03527 RHS protein CV094_16300 PF13737 Transposase DDE domain CV094_16315 PF00324 Amino acid permease CV094_16320 PF01266 FAD dependent oxidoreductase CV094_16325 PF00324 Amino acid permease CV094_16335 PF07729 FCD domain CV094_16335 PF00392 Bacterial regulatory proteins, gntR family CV094_16345 PF00171 Aldehyde dehydrogenase family CV094_16355 PF00202 Aminotransferase class-III CV094_16360 PF04958 Arginine N-succinyltransferase beta subunit CV094_16365 PF00324 Amino acid permease CV094_16370 PF13610 DDE domain CV094_16380 PF02796 Helix-turn-helix domain of resolvase CV094_16380 PF00239 Resolvase, N terminal domain CV094_16395 PF13610 DDE domain CV094_16400 PF01526 Tn3 transposase DDE domain CV094_16400 PF13700 Domain of unknown function (DUF4158) CV094_16405 PF02796 Helix-turn-helix domain of resolvase CV094_16405 PF00239 Resolvase, N terminal domain CV094_16410 PF13610 DDE domain CV094_16415 PF00239 Resolvase, N terminal domain CV094_16415 PF02796 Helix-turn-helix domain of resolvase CV094_16420 PF00563 EAL domain CV094_16420 PF11809 Domain of unknown function (DUF3330) CV094_16425 PF13495 Phage integrase, N-terminal SAM-like domain CV094_16425 PF00589 Phage integrase family CV094_16430 PF00583 Acetyltransferase (GNAT) family CV094_16450 PF13427 Domain of unknown function (DUF4111) CV094_16450 PF01909 Nucleotidyltransferase domain CV094_16455 PF00893 Small Multidrug Resistance protein CV094_16460 PF00809 Pterin binding enzyme CV094_16480 PF13610 DDE domain CV094_16485 PF02796 Helix-turn-helix domain of resolvase CV094_16485 PF00239 Resolvase, N terminal domain CV094_16495 PF13610 DDE domain CV094_16505 PF00106 short chain dehydrogenase CV094_16515 PF17932 Tetracyclin repressor-like, C-terminal domain CV094_16515 PF00440 Bacterial regulatory proteins, tetR family CV094_16520 PF17954 Quercetinase C-terminal cupin domain CV094_16520 PF02678 Pirin CV094_16530 PF00106 short chain dehydrogenase CV094_16535 PF00743 Flavin-binding monooxygenase-like CV094_16545 PF00860 Permease family CV094_16550 PF00962 Adenosine/AMP deaminase CV094_16555 PF01292 Prokaryotic cytochrome b561 CV094_16565 PF01351 Ribonuclease HII CV094_16570 PF02599 Global regulator protein family CV094_16575 PF13840 ACT domain CV094_16575 PF01842 ACT domain CV094_16575 PF00696 Amino acid kinase family CV094_16580 PF01411 tRNA synthetases class II (A) CV094_16580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CV094_16580 PF02272 DHHA1 domain CV094_16585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CV094_16585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CV094_16590 PF13393 Histidyl-tRNA synthetase CV094_16595 PF00709 Adenylosuccinate synthetase CV094_16610 PF00248 Aldo/keto reductase family CV094_16620 PF13545 Crp-like helix-turn-helix domain CV094_16620 PF00027 Cyclic nucleotide-binding domain CV094_16625 PF02566 OsmC-like protein CV094_16640 PF10431 C-terminal, D2-small domain, of ClpB protein CV094_16640 PF02861 Clp amino terminal domain, pathogenicity island component CV094_16640 PF17871 AAA lid domain CV094_16640 PF00004 ATPase family associated with various cellular activities (AAA) CV094_16640 PF07724 AAA domain (Cdc48 subfamily) CV094_16655 PF10672 S-adenosylmethionine-dependent methyltransferase CV094_16655 PF02926 THUMP domain CV094_16655 PF01170 Putative RNA methylase family UPF0020 CV094_16665 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CV094_16665 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CV094_16670 PF01979 Amidohydrolase family CV094_16675 PF00691 OmpA family CV094_16675 PF13488 Glycine zipper CV094_16685 PF13417 Glutathione S-transferase, N-terminal domain CV094_16685 PF00043 Glutathione S-transferase, C-terminal domain CV094_16690 PF02390 Putative methyltransferase CV094_16700 PF02798 Glutathione S-transferase, N-terminal domain CV094_16700 PF00043 Glutathione S-transferase, C-terminal domain CV094_16710 PF13192 Thioredoxin domain CV094_16710 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_16730 PF00578 AhpC/TSA family CV094_16730 PF10417 C-terminal domain of 1-Cys peroxiredoxin CV094_16735 PF11898 Domain of unknown function (DUF3418) CV094_16735 PF04408 Helicase associated domain (HA2) CV094_16735 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CV094_16735 PF00271 Helicase conserved C-terminal domain CV094_16735 PF00270 DEAD/DEAH box helicase CV094_16740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CV094_16740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CV094_16750 PF07690 Major Facilitator Superfamily CV094_16755 PF03594 Benzoate membrane transport protein CV094_16760 PF00106 short chain dehydrogenase CV094_16765 PF00175 Oxidoreductase NAD-binding domain CV094_16765 PF00111 2Fe-2S iron-sulfur cluster binding domain CV094_16765 PF00970 Oxidoreductase FAD-binding domain CV094_16770 PF00866 Ring hydroxylating beta subunit CV094_16775 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CV094_16775 PF00355 Rieske [2Fe-2S] domain CV094_16780 PF03466 LysR substrate binding domain CV094_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_16790 PF00403 Heavy-metal-associated domain CV094_16795 PF09278 MerR, DNA binding CV094_16795 PF00376 MerR family regulatory protein CV094_16835 PF02601 Exonuclease VII, large subunit CV094_16835 PF13742 OB-fold nucleic acid binding domain CV094_16870 PF01810 LysE type translocator CV094_16875 PF00313 'Cold-shock' DNA-binding domain CV094_16885 PF14748 Pyrroline-5-carboxylate reductase dimerisation CV094_16885 PF03807 NADP oxidoreductase coenzyme F420-dependent CV094_16915 PF07690 Major Facilitator Superfamily CV094_16920 PF01638 HxlR-like helix-turn-helix CV094_16950 PF09190 DALR domain CV094_16950 PF01406 tRNA synthetases class I (C) catalytic domain CV094_16955 PF00571 CBS domain CV094_16955 PF01380 SIS domain CV094_16970 PF03968 OstA-like protein CV094_16975 PF12399 Branched-chain amino acid ATP-binding cassette transporter CV094_16975 PF00005 ABC transporter CV094_16980 PF02321 Outer membrane efflux protein CV094_16985 PF00005 ABC transporter CV094_16985 PF00664 ABC transporter transmembrane region CV094_16985 PF03412 Peptidase C39 family CV094_16995 PF01205 Uncharacterized protein family UPF0029 CV094_17000 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_17010 PF01596 O-methyltransferase CV094_17020 PF11953 Domain of unknown function (DUF3470) CV094_17020 PF00037 4Fe-4S binding domain CV094_17030 PF00488 MutS domain V CV094_17030 PF05190 MutS family domain IV CV094_17030 PF05192 MutS domain III CV094_17030 PF05188 MutS domain II CV094_17030 PF01624 MutS domain I CV094_17035 PF01037 Lrp/AsnC ligand binding domain CV094_17040 PF00892 EamA-like transporter family CV094_17045 PF00990 Diguanylate cyclase, GGDEF domain CV094_17045 PF00563 EAL domain CV094_17045 PF03707 Bacterial signalling protein N terminal repeat CV094_17050 PF03279 Bacterial lipid A biosynthesis acyltransferase CV094_17060 PF07690 Major Facilitator Superfamily CV094_17080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CV094_17080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CV094_17100 PF13419 Haloacid dehalogenase-like hydrolase CV094_17115 PF04717 Type VI secretion system, phage-baseplate injector CV094_17115 PF16671 Actin cross-linking domain CV094_17120 PF14220 Domain of unknown function (DUF4329) CV094_17120 PF03527 RHS protein CV094_17120 PF05593 RHS Repeat CV094_17135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_17135 PF03466 LysR substrate binding domain CV094_17140 PF01566 Natural resistance-associated macrophage protein CV094_17145 PF03746 LamB/YcsF family CV094_17150 PF07286 Protein of unknown function (DUF1445) CV094_17160 PF00289 Biotin carboxylase, N-terminal domain CV094_17160 PF00364 Biotin-requiring enzyme CV094_17160 PF02785 Biotin carboxylase C-terminal domain CV094_17160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CV094_17165 PF00654 Voltage gated chloride channel CV094_17170 PF13610 DDE domain CV094_17195 PF13610 DDE domain CV094_17205 PF00528 Binding-protein-dependent transport system inner membrane component CV094_17210 PF09383 NIL domain CV094_17210 PF00005 ABC transporter CV094_17215 PF03180 NLPA lipoprotein CV094_17220 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CV094_17220 PF02843 Phosphoribosylglycinamide synthetase, C domain CV094_17220 PF02844 Phosphoribosylglycinamide synthetase, N domain CV094_17225 PF02142 MGS-like domain CV094_17225 PF01808 AICARFT/IMPCHase bienzyme CV094_17230 PF02954 Bacterial regulatory protein, Fis family CV094_17250 PF13932 GidA associated domain CV094_17250 PF01134 Glucose inhibited division protein A CV094_17260 PF14403 Circularly permuted ATP-grasp type 2 CV094_17270 PF01841 Transglutaminase-like superfamily CV094_17270 PF08379 Bacterial transglutaminase-like N-terminal region CV094_17280 PF00842 Alanine racemase, C-terminal domain CV094_17280 PF01168 Alanine racemase, N-terminal domain CV094_17285 PF00772 DnaB-like helicase N terminal domain CV094_17285 PF03796 DnaB-like helicase C terminal domain CV094_17290 PF01281 Ribosomal protein L9, N-terminal domain CV094_17290 PF03948 Ribosomal protein L9, C-terminal domain CV094_17295 PF01084 Ribosomal protein S18 CV094_17300 PF01250 Ribosomal protein S6 CV094_17305 PF01040 UbiA prenyltransferase family CV094_17310 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CV094_17315 PF00510 Cytochrome c oxidase subunit III CV094_17320 PF00115 Cytochrome C and Quinol oxidase polypeptide I CV094_17325 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CV094_17325 PF06481 COX Aromatic Rich Motif CV094_17335 PF00391 PEP-utilising enzyme, mobile domain CV094_17335 PF02896 PEP-utilising enzyme, TIM barrel domain CV094_17335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CV094_17340 PF03618 Kinase/pyrophosphorylase CV094_17350 PF01522 Polysaccharide deacetylase CV094_17350 PF14883 Hypothetical glycosyl hydrolase family 13 CV094_17355 PF00535 Glycosyl transferase family 2 CV094_17370 PF00296 Luciferase-like monooxygenase CV094_17390 PF03466 LysR substrate binding domain CV094_17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_17400 PF00472 RF-1 domain CV094_17400 PF03462 PCRF domain CV094_17405 PF17827 PrmC N-terminal domain CV094_17405 PF13847 Methyltransferase domain CV094_17410 PF00528 Binding-protein-dependent transport system inner membrane component CV094_17415 PF09084 NMT1/THI5 like CV094_17420 PF12833 Helix-turn-helix domain CV094_17425 PF00106 short chain dehydrogenase CV094_17430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_17430 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_17430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_17435 PF13193 AMP-binding enzyme C-terminal domain CV094_17435 PF00501 AMP-binding enzyme CV094_17440 PF01613 Flavin reductase like domain CV094_17445 PF00899 ThiF family CV094_17450 PF03109 ABC1 family CV094_17465 PF03814 Potassium-transporting ATPase A subunit CV094_17475 PF02669 K+-transporting ATPase, c chain CV094_17480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_17480 PF00512 His Kinase A (phospho-acceptor) domain CV094_17480 PF13493 Domain of unknown function (DUF4118) CV094_17480 PF02702 Osmosensitive K+ channel His kinase sensor domain CV094_17485 PF00486 Transcriptional regulatory protein, C terminal CV094_17485 PF00072 Response regulator receiver domain CV094_17490 PF00120 Glutamine synthetase, catalytic domain CV094_17500 PF03232 Ubiquinone biosynthesis protein COQ7 CV094_17505 PF07690 Major Facilitator Superfamily CV094_17510 PF17243 POTRA domain TamA domain 1 CV094_17510 PF07244 Surface antigen variable number repeat CV094_17510 PF01103 Surface antigen CV094_17530 PF06434 Aconitate hydratase 2 N-terminus CV094_17530 PF11791 Aconitate B N-terminal domain CV094_17530 PF00330 Aconitase family (aconitate hydratase) CV094_17540 PF00520 Ion transport protein CV094_17540 PF00027 Cyclic nucleotide-binding domain CV094_17545 PF07690 Major Facilitator Superfamily CV094_17560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_17560 PF03466 LysR substrate binding domain CV094_17565 PF04284 Protein of unknown function (DUF441) CV094_17575 PF01479 S4 domain CV094_17575 PF00849 RNA pseudouridylate synthase CV094_17590 PF00849 RNA pseudouridylate synthase CV094_17590 PF01479 S4 domain CV094_17595 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CV094_17600 PF08676 MutL C terminal dimerisation domain CV094_17600 PF01119 DNA mismatch repair protein, C-terminal domain CV094_17610 PF17209 Hfq protein CV094_17620 PF00881 Nitroreductase family CV094_17630 PF00149 Calcineurin-like phosphoesterase CV094_17635 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CV094_17640 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CV094_17640 PF00749 tRNA synthetases class I (E and Q), catalytic domain CV094_17645 PF00958 GMP synthase C terminal domain CV094_17645 PF02540 NAD synthase CV094_17645 PF00117 Glutamine amidotransferase class-I CV094_17650 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CV094_17655 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CV094_17660 PF13520 Amino acid permease CV094_17665 PF00171 Aldehyde dehydrogenase family CV094_17680 PF00465 Iron-containing alcohol dehydrogenase CV094_17685 PF14493 Helix-turn-helix domain CV094_17685 PF05970 PIF1-like helicase CV094_17695 PF06445 GyrI-like small molecule binding domain CV094_17700 PF02110 Hydroxyethylthiazole kinase family CV094_17715 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CV094_17715 PF11940 Domain of unknown function (DUF3458) Ig-like fold CV094_17715 PF01433 Peptidase family M1 domain CV094_17725 PF00106 short chain dehydrogenase CV094_17735 PF01817 Chorismate mutase type II CV094_17740 PF01037 Lrp/AsnC ligand binding domain CV094_17755 PF00440 Bacterial regulatory proteins, tetR family CV094_17760 PF00593 TonB dependent receptor CV094_17760 PF07715 TonB-dependent Receptor Plug Domain CV094_17765 PF00924 Mechanosensitive ion channel CV094_17800 PF00593 TonB dependent receptor CV094_17800 PF07715 TonB-dependent Receptor Plug Domain CV094_17820 PF00005 ABC transporter CV094_17820 PF12848 ABC transporter CV094_17825 PF00582 Universal stress protein family CV094_17840 PF00689 Cation transporting ATPase, C-terminus CV094_17840 PF00690 Cation transporter/ATPase, N-terminus CV094_17845 PF02308 MgtC family CV094_17850 PF03594 Benzoate membrane transport protein CV094_17855 PF01037 Lrp/AsnC ligand binding domain CV094_17860 PF01810 LysE type translocator CV094_17870 PF03466 LysR substrate binding domain CV094_17870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_17880 PF00108 Thiolase, N-terminal domain CV094_17880 PF02803 Thiolase, C-terminal domain CV094_17905 PF07690 Major Facilitator Superfamily CV094_17910 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CV094_17910 PF12170 DNA polymerase III tau subunit V interacting with alpha CV094_17910 PF12169 DNA polymerase III subunits gamma and tau domain III CV094_17915 PF05506 Domain of unknown function (DUF756) CV094_17915 PF04185 Phosphoesterase family CV094_17920 PF03061 Thioesterase superfamily CV094_17925 PF00465 Iron-containing alcohol dehydrogenase CV094_17935 PF01451 Low molecular weight phosphotyrosine protein phosphatase CV094_17940 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CV094_17940 PF01565 FAD binding domain CV094_17955 PF01645 Conserved region in glutamate synthase CV094_18240 PF01476 LysM domain CV094_18240 PF08525 Opacity-associated protein A N-terminal motif CV094_18240 PF01551 Peptidase family M23 CV094_18310 PF12832 MFS_1 like family CV094_18320 PF02785 Biotin carboxylase C-terminal domain CV094_18320 PF00289 Biotin carboxylase, N-terminal domain CV094_18320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CV094_18325 PF00364 Biotin-requiring enzyme CV094_18330 PF01220 Dehydroquinase class II CV094_18335 PF11799 impB/mucB/samB family C-terminal domain CV094_18335 PF00817 impB/mucB/samB family CV094_18335 PF13438 Domain of unknown function (DUF4113) CV094_18345 PF00005 ABC transporter CV094_18350 PF00486 Transcriptional regulatory protein, C terminal CV094_18350 PF00072 Response regulator receiver domain CV094_18360 PF04324 BFD-like [2Fe-2S] binding domain CV094_18360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CV094_18360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CV094_18360 PF13806 Rieske-like [2Fe-2S] domain CV094_18360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_18360 PF18267 Rubredoxin NAD+ reductase C-terminal domain CV094_18365 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_18365 PF18267 Rubredoxin NAD+ reductase C-terminal domain CV094_18365 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CV094_18365 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CV094_18365 PF04324 BFD-like [2Fe-2S] binding domain CV094_18370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CV094_18370 PF01568 Molydopterin dinucleotide binding domain CV094_18370 PF04324 BFD-like [2Fe-2S] binding domain CV094_18370 PF00384 Molybdopterin oxidoreductase CV094_18375 PF12804 MobA-like NTP transferase domain CV094_18380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CV094_18380 PF00384 Molybdopterin oxidoreductase CV094_18380 PF01568 Molydopterin dinucleotide binding domain CV094_18385 PF04055 Radical SAM superfamily CV094_18385 PF06463 Molybdenum Cofactor Synthesis C CV094_18395 PF02391 MoaE protein CV094_18400 PF01967 MoaC family CV094_18400 PF00994 Probable molybdopterin binding domain CV094_18405 PF03453 MoeA N-terminal region (domain I and II) CV094_18405 PF00994 Probable molybdopterin binding domain CV094_18405 PF03454 MoeA C-terminal region (domain IV) CV094_18410 PF01638 HxlR-like helix-turn-helix CV094_18415 PF00155 Aminotransferase class I and II CV094_18415 PF00392 Bacterial regulatory proteins, gntR family CV094_18420 PF00892 EamA-like transporter family CV094_18440 PF02635 DsrE/DsrF-like family CV094_18445 PF16363 GDP-mannose 4,6 dehydratase CV094_18450 PF10415 Fumarase C C-terminus CV094_18450 PF00206 Lyase CV094_18475 PF01266 FAD dependent oxidoreductase CV094_18485 PF02542 YgbB family CV094_18495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CV094_18495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CV094_18500 PF00440 Bacterial regulatory proteins, tetR family CV094_18505 PF02954 Bacterial regulatory protein, Fis family CV094_18505 PF00072 Response regulator receiver domain CV094_18505 PF00158 Sigma-54 interaction domain CV094_18510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV094_18510 PF00512 His Kinase A (phospho-acceptor) domain CV094_18510 PF00989 PAS fold CV094_18515 PF18693 TRAM domain CV094_18515 PF04055 Radical SAM superfamily CV094_18515 PF00919 Uncharacterized protein family UPF0004 CV094_18520 PF00696 Amino acid kinase family CV094_18525 PF01765 Ribosome recycling factor CV094_18530 PF01255 Putative undecaprenyl diphosphate synthase CV094_18540 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CV094_18540 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CV094_18540 PF13288 DXP reductoisomerase C-terminal domain CV094_18545 PF02163 Peptidase family M50 CV094_18545 PF17820 PDZ domain CV094_18545 PF13180 PDZ domain CV094_18550 PF07244 Surface antigen variable number repeat CV094_18550 PF01103 Surface antigen CV094_18560 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_18560 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CV094_18565 PF07977 FabA-like domain CV094_18570 PF00132 Bacterial transferase hexapeptide (six repeats) CV094_18570 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CV094_18585 PF02631 RecX family CV094_18590 PF00154 recA bacterial DNA recombination protein CV094_18595 PF01479 S4 domain CV094_18600 PF13419 Haloacid dehalogenase-like hydrolase CV094_18625 PF01037 Lrp/AsnC ligand binding domain CV094_18635 PF00324 Amino acid permease CV094_18645 PF00082 Subtilase family CV094_18645 PF05922 Peptidase inhibitor I9 CV094_18650 PF01740 STAS domain CV094_18650 PF00916 Sulfate permease family CV094_18655 PF02586 SOS response associated peptidase (SRAP) CV094_18660 PF07995 Glucose / Sorbosone dehydrogenase CV094_18670 PF00990 Diguanylate cyclase, GGDEF domain CV094_18670 PF00563 EAL domain CV094_18670 PF03707 Bacterial signalling protein N terminal repeat CV094_18690 PF02378 Phosphotransferase system, EIIC CV094_18690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CV094_18695 PF00294 pfkB family carbohydrate kinase CV094_18700 PF00391 PEP-utilising enzyme, mobile domain CV094_18700 PF02896 PEP-utilising enzyme, TIM barrel domain CV094_18700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CV094_18700 PF05524 PEP-utilising enzyme, N-terminal CV094_18700 PF00381 PTS HPr component phosphorylation site CV094_18725 PF05525 Branched-chain amino acid transport protein CV094_18730 PF00557 Metallopeptidase family M24 CV094_18735 PF03466 LysR substrate binding domain CV094_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_18745 PF00462 Glutaredoxin CV094_18750 PF00202 Aminotransferase class-III CV094_18755 PF00478 IMP dehydrogenase / GMP reductase domain CV094_18755 PF00571 CBS domain CV094_18780 PF02881 SRP54-type protein, helical bundle domain CV094_18780 PF00448 SRP54-type protein, GTPase domain CV094_18790 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CV094_18805 PF08173 Membrane bound YbgT-like protein CV094_18810 PF02322 Cytochrome bd terminal oxidase subunit II CV094_18815 PF01654 Cytochrome bd terminal oxidase subunit I CV094_18830 PF07290 Protein of unknown function (DUF1449) CV094_18840 PF00294 pfkB family carbohydrate kinase CV094_18845 PF07715 TonB-dependent Receptor Plug Domain CV094_18845 PF00593 TonB dependent receptor CV094_18850 PF08367 Peptidase M16C associated CV094_18850 PF05193 Peptidase M16 inactive domain CV094_18850 PF00675 Insulinase (Peptidase family M16) CV094_18855 PF02253 Phospholipase A1 CV094_18860 PF02386 Cation transport protein CV094_18865 PF02254 TrkA-N domain CV094_18865 PF02080 TrkA-C domain CV094_18870 PF00585 C-terminal regulatory domain of Threonine dehydratase CV094_18870 PF00291 Pyridoxal-phosphate dependent enzyme CV094_18875 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CV094_18890 PF02774 Semialdehyde dehydrogenase, dimerisation domain CV094_18890 PF01118 Semialdehyde dehydrogenase, NAD binding domain CV094_18900 PF02617 ATP-dependent Clp protease adaptor protein ClpS CV094_18905 PF17871 AAA lid domain CV094_18905 PF07724 AAA domain (Cdc48 subfamily) CV094_18905 PF10431 C-terminal, D2-small domain, of ClpB protein CV094_18905 PF00004 ATPase family associated with various cellular activities (AAA) CV094_18905 PF02861 Clp amino terminal domain, pathogenicity island component CV094_18910 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CV094_18915 PF00793 DAHP synthetase I family CV094_18930 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV094_18930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CV094_18960 PF00117 Glutamine amidotransferase class-I CV094_18960 PF06418 CTP synthase N-terminus CV094_18965 PF00793 DAHP synthetase I family CV094_18970 PF00113 Enolase, C-terminal TIM barrel domain CV094_18970 PF03952 Enolase, N-terminal domain CV094_18975 PF04239 Protein of unknown function (DUF421) CV094_18980 PF04977 Septum formation initiator CV094_18985 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CV094_18990 PF01144 Coenzyme A transferase CV094_18995 PF01144 Coenzyme A transferase CV094_19000 PF02803 Thiolase, C-terminal domain CV094_19000 PF00108 Thiolase, N-terminal domain CV094_19005 PF10397 Adenylosuccinate lyase C-terminus CV094_19005 PF00206 Lyase CV094_19010 PF00561 alpha/beta hydrolase fold CV094_19015 PF07690 Major Facilitator Superfamily CV094_19020 PF02627 Carboxymuconolactone decarboxylase family CV094_19025 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CV094_19025 PF00775 Dioxygenase CV094_19030 PF00775 Dioxygenase CV094_19035 PF01487 Type I 3-dehydroquinase CV094_19040 PF05048 Periplasmic copper-binding protein (NosD) CV094_19045 PF04966 Carbohydrate-selective porin, OprB family CV094_19050 PF01011 PQQ enzyme repeat CV094_19050 PF13360 PQQ-like domain CV094_19060 PF04143 Sulphur transport CV094_19070 PF00753 Metallo-beta-lactamase superfamily CV094_19075 PF09339 IclR helix-turn-helix domain CV094_19075 PF01614 Bacterial transcriptional regulator CV094_19080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_19080 PF03466 LysR substrate binding domain CV094_19085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_19085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_19085 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_19100 PF00106 short chain dehydrogenase CV094_19110 PF07690 Major Facilitator Superfamily CV094_19120 PF01425 Amidase CV094_19125 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CV094_19140 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CV094_19140 PF00355 Rieske [2Fe-2S] domain CV094_19155 PF00175 Oxidoreductase NAD-binding domain CV094_19155 PF00111 2Fe-2S iron-sulfur cluster binding domain CV094_19160 PF01613 Flavin reductase like domain CV094_19165 PF12833 Helix-turn-helix domain CV094_19165 PF02311 AraC-like ligand binding domain CV094_19170 PF07833 Copper amine oxidase N-terminal domain CV094_19170 PF01179 Copper amine oxidase, enzyme domain CV094_19170 PF02727 Copper amine oxidase, N2 domain CV094_19170 PF02728 Copper amine oxidase, N3 domain CV094_19180 PF00171 Aldehyde dehydrogenase family CV094_19185 PF01804 Penicillin amidase CV094_19190 PF12146 Serine aminopeptidase, S33 CV094_19195 PF02803 Thiolase, C-terminal domain CV094_19195 PF00108 Thiolase, N-terminal domain CV094_19200 PF01144 Coenzyme A transferase CV094_19205 PF01144 Coenzyme A transferase CV094_19210 PF00775 Dioxygenase CV094_19210 PF04444 Catechol dioxygenase N terminus CV094_19215 PF02426 Muconolactone delta-isomerase CV094_19220 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CV094_19220 PF13378 Enolase C-terminal domain-like CV094_19225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CV094_19225 PF03466 LysR substrate binding domain CV094_19235 PF00392 Bacterial regulatory proteins, gntR family CV094_19235 PF07729 FCD domain CV094_19240 PF00920 Dehydratase family CV094_19245 PF07690 Major Facilitator Superfamily CV094_19255 PF00171 Aldehyde dehydrogenase family CV094_19275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CV094_19275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CV094_19275 PF02770 Acyl-CoA dehydrogenase, middle domain CV094_19285 PF00158 Sigma-54 interaction domain CV094_19285 PF06506 Propionate catabolism activator CV094_19285 PF02954 Bacterial regulatory protein, Fis family CV094_19295 PF06986 Type-1V conjugative transfer system mating pair stabilisation CV094_19310 PF06122 Conjugative relaxosome accessory transposon protein CV094_19330 PF13438 Domain of unknown function (DUF4113) CV094_19330 PF00817 impB/mucB/samB family CV094_19330 PF11799 impB/mucB/samB family C-terminal domain CV094_19420 PF00565 Staphylococcal nuclease homologue CV094_19425 PF00816 H-NS histone family CV094_19485 PF13614 AAA domain CV094_19490 PF02195 ParB-like nuclease domain CV094_19490 PF17762 HTH domain found in ParB protein CV094_19510 PF05816 Toxic anion resistance protein (TelA) CV094_19665 PF18272 single-stranded DNA binding TraI N-terminal subdomain CV094_19665 PF07057 DNA helicase TraI CV094_19665 PF18340 DNA relaxase TraI 2B/2B-like domain CV094_19665 PF08751 TrwC relaxase CV094_19685 PF13737 Transposase DDE domain CV094_19710 PF02796 Helix-turn-helix domain of resolvase CV094_19710 PF00239 Resolvase, N terminal domain CV094_19725 PF01464 Transglycosylase SLT domain CV094_19760 PF10411 Disulfide bond isomerase protein N-terminus CV094_19760 PF13098 Thioredoxin-like domain CV094_19795 PF06834 TraU protein