locus-tag class description H5028_00005 PF11638 DnaA N-terminal domain H5028_00005 PF08299 Bacterial dnaA protein helix-turn-helix H5028_00005 PF00308 Bacterial dnaA protein H5028_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain H5028_00010 PF02767 DNA polymerase III beta subunit, central domain H5028_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain H5028_00015 PF02463 RecF/RecN/SMC N terminal domain H5028_00020 PF00204 DNA gyrase B H5028_00020 PF00986 DNA gyrase B subunit, carboxyl terminus H5028_00020 PF18053 DNA gyrase B subunit insert domain H5028_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_00020 PF01751 Toprim domain H5028_00030 PF09335 SNARE associated Golgi protein H5028_00035 PF00005 ABC transporter H5028_00035 PF12848 ABC transporter H5028_00055 PF01521 Iron-sulphur cluster biosynthesis H5028_00060 PF00561 alpha/beta hydrolase fold H5028_00065 PF03702 Anhydro-N-acetylmuramic acid kinase H5028_00070 PF00579 tRNA synthetases class I (W and Y) H5028_00110 PF00209 Sodium:neurotransmitter symporter family H5028_00120 PF01029 NusB family H5028_00120 PF01189 16S rRNA methyltransferase RsmB/F H5028_00125 PF00551 Formyl transferase H5028_00125 PF02911 Formyl transferase, C-terminal domain H5028_00130 PF00920 Dehydratase family H5028_00145 PF03466 LysR substrate binding domain H5028_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_00150 PF00860 Permease family H5028_00155 PF00311 Phosphoenolpyruvate carboxylase H5028_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region H5028_00160 PF00440 Bacterial regulatory proteins, tetR family H5028_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5028_00170 PF00873 AcrB/AcrD/AcrF family H5028_00180 PF01556 DnaJ C terminal domain H5028_00180 PF00684 DnaJ central domain H5028_00180 PF00226 DnaJ domain H5028_00190 PF05173 Dihydrodipicolinate reductase, C-terminus H5028_00190 PF01113 Dihydrodipicolinate reductase, N-terminus H5028_00200 PF07690 Major Facilitator Superfamily H5028_00205 PF00248 Aldo/keto reductase family H5028_00210 PF03466 LysR substrate binding domain H5028_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_00225 PF00392 Bacterial regulatory proteins, gntR family H5028_00225 PF00155 Aminotransferase class I and II H5028_00230 PF08240 Alcohol dehydrogenase GroES-like domain H5028_00230 PF00107 Zinc-binding dehydrogenase H5028_00235 PF03352 Methyladenine glycosylase H5028_00250 PF00633 Helix-hairpin-helix motif H5028_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein H5028_00250 PF10576 Iron-sulfur binding domain of endonuclease III H5028_00250 PF14815 NUDIX domain H5028_00265 PF07043 Protein of unknown function (DUF1328) H5028_00270 PF03692 Putative zinc- or iron-chelating domain H5028_00275 PF07995 Glucose / Sorbosone dehydrogenase H5028_00280 PF00004 ATPase family associated with various cellular activities (AAA) H5028_00280 PF16193 AAA C-terminal domain H5028_00280 PF12002 MgsA AAA+ ATPase C terminal H5028_00285 PF01226 Formate/nitrite transporter H5028_00295 PF01259 SAICAR synthetase H5028_00305 PF00701 Dihydrodipicolinate synthetase family H5028_00310 PF00857 Isochorismatase family H5028_00315 PF01758 Sodium Bile acid symporter family H5028_00320 PF01554 MatE H5028_00325 PF04463 Protein of unknown function (DUF523) H5028_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5028_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5028_00345 PF14497 Glutathione S-transferase, C-terminal domain H5028_00345 PF02798 Glutathione S-transferase, N-terminal domain H5028_00355 PF00324 Amino acid permease H5028_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain H5028_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain H5028_00375 PF00392 Bacterial regulatory proteins, gntR family H5028_00375 PF07702 UTRA domain H5028_00380 PF05962 HutD H5028_00385 PF01175 Urocanase Rossmann-like domain H5028_00385 PF17392 Urocanase C-terminal domain H5028_00385 PF17391 Urocanase N-terminal domain H5028_00390 PF00221 Aromatic amino acid lyase H5028_00395 PF00324 Amino acid permease H5028_00400 PF01979 Amidohydrolase family H5028_00405 PF00491 Arginase family H5028_00420 PF01177 Asp/Glu/Hydantoin racemase H5028_00430 PF00580 UvrD/REP helicase N-terminal domain H5028_00430 PF13361 UvrD-like helicase C-terminal domain H5028_00440 PF08463 EcoEI R protein C-terminal H5028_00440 PF00271 Helicase conserved C-terminal domain H5028_00440 PF04851 Type III restriction enzyme, res subunit H5028_00440 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) H5028_00445 PF01420 Type I restriction modification DNA specificity domain H5028_00450 PF02384 N-6 DNA Methylase H5028_00450 PF12161 HsdM N-terminal domain H5028_00460 PF01381 Helix-turn-helix H5028_00475 PF00665 Integrase core domain H5028_00480 PF13737 Transposase DDE domain H5028_00500 PF01636 Phosphotransferase enzyme family H5028_00505 PF00665 Integrase core domain H5028_00505 PF13936 Helix-turn-helix domain H5028_00510 PF00753 Metallo-beta-lactamase superfamily H5028_00520 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase H5028_00525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H5028_00530 PF03091 CutA1 divalent ion tolerance protein H5028_00575 PF00665 Integrase core domain H5028_00575 PF13936 Helix-turn-helix domain H5028_00580 PF00753 Metallo-beta-lactamase superfamily H5028_00580 PF14863 Alkyl sulfatase dimerisation H5028_00580 PF14864 Alkyl sulfatase C-terminal H5028_00590 PF00665 Integrase core domain H5028_00590 PF13936 Helix-turn-helix domain H5028_00595 PF01695 IstB-like ATP binding protein H5028_00620 PF06527 TniQ H5028_00620 PF15978 Tn7-like transposition protein D H5028_00625 PF11426 Tn7 transposition regulator TnsC H5028_00625 PF13401 AAA domain H5028_00630 PF00665 Integrase core domain H5028_00635 PF08721 TnsA endonuclease C terminal H5028_00635 PF08722 TnsA endonuclease N terminal H5028_00640 PF01380 SIS domain H5028_00645 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_00645 PF14602 Hexapeptide repeat of succinyl-transferase H5028_00645 PF12804 MobA-like NTP transferase domain H5028_00650 PF04608 Phosphatidylglycerophosphatase A H5028_00655 PF00586 AIR synthase related protein, N-terminal domain H5028_00655 PF02769 AIR synthase related protein, C-terminal domain H5028_00660 PF01029 NusB family H5028_00665 PF00885 6,7-dimethyl-8-ribityllumazine synthase H5028_00670 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H5028_00670 PF00925 GTP cyclohydrolase II H5028_00695 PF02580 D-Tyr-tRNA(Tyr) deacylase H5028_00700 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain H5028_00700 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family H5028_00705 PF00581 Rhodanese-like domain H5028_00710 PF02666 Phosphatidylserine decarboxylase H5028_00715 PF03069 Acetamidase/Formamidase family H5028_00735 PF00512 His Kinase A (phospho-acceptor) domain H5028_00735 PF00989 PAS fold H5028_00735 PF11808 Phosphate regulon sensor protein PhoR H5028_00735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_00740 PF00072 Response regulator receiver domain H5028_00740 PF00486 Transcriptional regulatory protein, C terminal H5028_00750 PF00106 short chain dehydrogenase H5028_00755 PF01554 MatE H5028_00760 PF00155 Aminotransferase class I and II H5028_00765 PF04286 Protein of unknown function (DUF445) H5028_00780 PF04262 Glutamate-cysteine ligase H5028_00785 PF02600 Disulfide bond formation protein DsbB H5028_00790 PF13296 Putative type VI secretion system Rhs element Vgr H5028_00790 PF04717 Type VI secretion system, phage-baseplate injector H5028_00790 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H5028_00795 PF00877 NlpC/P60 family H5028_00795 PF01476 LysM domain H5028_00810 PF05728 Uncharacterised protein family (UPF0227) H5028_00815 PF01751 Toprim domain H5028_00815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_00815 PF00986 DNA gyrase B subunit, carboxyl terminus H5028_00815 PF00204 DNA gyrase B H5028_00820 PF00106 short chain dehydrogenase H5028_00825 PF04115 Ureidoglycolate lyase H5028_00830 PF03561 Allantoicase repeat H5028_00835 PF01494 FAD binding domain H5028_00845 PF00860 Permease family H5028_00850 PF00576 HIUase/Transthyretin family H5028_00880 PF11412 Disulphide bond corrector protein DsbC H5028_00880 PF02683 Cytochrome C biogenesis protein transmembrane region H5028_00885 PF00990 Diguanylate cyclase, GGDEF domain H5028_00885 PF07694 5TMR of 5TMR-LYT H5028_00890 PF07859 alpha/beta hydrolase fold H5028_00900 PF03960 ArsC family H5028_00905 PF03372 Endonuclease/Exonuclease/phosphatase family H5028_00910 PF00156 Phosphoribosyl transferase domain H5028_00915 PF07715 TonB-dependent Receptor Plug Domain H5028_00915 PF00593 TonB dependent receptor H5028_00925 PF02951 Prokaryotic glutathione synthetase, N-terminal domain H5028_00925 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain H5028_00930 PF03033 Glycosyltransferase family 28 N-terminal domain H5028_00930 PF04101 Glycosyltransferase family 28 C-terminal domain H5028_00935 PF02875 Mur ligase family, glutamate ligase domain H5028_00935 PF01225 Mur ligase family, catalytic domain H5028_00935 PF08245 Mur ligase middle domain H5028_00940 PF07478 D-ala D-ala ligase C-terminus H5028_00940 PF01820 D-ala D-ala ligase N-terminus H5028_00945 PF03799 Cell division protein FtsQ H5028_00945 PF08478 POTRA domain, FtsQ-type H5028_00950 PF02491 SHS2 domain inserted in FTSA H5028_00955 PF00091 Tubulin/FtsZ family, GTPase domain H5028_00955 PF12327 FtsZ family, C-terminal domain H5028_00960 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase H5028_00970 PF01551 Peptidase family M23 H5028_00975 PF00456 Transketolase, thiamine diphosphate binding domain H5028_00975 PF17831 Pyruvate dehydrogenase E1 component middle domain H5028_00980 PF00364 Biotin-requiring enzyme H5028_00980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5028_00980 PF02817 e3 binding domain H5028_00990 PF01169 Uncharacterized protein family UPF0016 H5028_00995 PF00593 TonB dependent receptor H5028_00995 PF07715 TonB-dependent Receptor Plug Domain H5028_01000 PF00258 Flavodoxin H5028_01000 PF01613 Flavin reductase like domain H5028_01005 PF03692 Putative zinc- or iron-chelating domain H5028_01010 PF00478 IMP dehydrogenase / GMP reductase domain H5028_01010 PF00571 CBS domain H5028_01015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5028_01015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5028_01015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5028_01015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5028_01020 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region H5028_01020 PF01243 Pyridoxamine 5'-phosphate oxidase H5028_01025 PF01368 DHH family H5028_01025 PF17768 RecJ OB domain H5028_01025 PF02272 DHHA1 domain H5028_01045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5028_01050 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) H5028_01055 PF04452 RNA methyltransferase H5028_01060 PF00924 Mechanosensitive ion channel H5028_01070 PF16177 Acetyl-coenzyme A synthetase N-terminus H5028_01070 PF00501 AMP-binding enzyme H5028_01070 PF13193 AMP-binding enzyme C-terminal domain H5028_01075 PF00857 Isochorismatase family H5028_01080 PF01037 Lrp/AsnC ligand binding domain H5028_01085 PF00872 Transposase, Mutator family H5028_01090 PF00296 Luciferase-like monooxygenase H5028_01095 PF03358 NADPH-dependent FMN reductase H5028_01100 PF00072 Response regulator receiver domain H5028_01100 PF00196 Bacterial regulatory proteins, luxR family H5028_01110 PF00072 Response regulator receiver domain H5028_01110 PF01627 Hpt domain H5028_01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_01110 PF00512 His Kinase A (phospho-acceptor) domain H5028_01110 PF00672 HAMP domain H5028_01115 PF04341 Protein of unknown function, DUF485 H5028_01120 PF00474 Sodium:solute symporter family H5028_01130 PF02028 BCCT, betaine/carnitine/choline family transporter H5028_01140 PF00990 Diguanylate cyclase, GGDEF domain H5028_01150 PF17760 UvrA interaction domain H5028_01150 PF17755 UvrA DNA-binding domain H5028_01150 PF00005 ABC transporter H5028_01155 PF00440 Bacterial regulatory proteins, tetR family H5028_01155 PF16925 Tetracyclin repressor-like, C-terminal domain H5028_01160 PF00107 Zinc-binding dehydrogenase H5028_01160 PF08240 Alcohol dehydrogenase GroES-like domain H5028_01170 PF06942 GlpM protein H5028_01175 PF03070 TENA/THI-4/PQQC family H5028_01175 PF08543 Phosphomethylpyrimidine kinase H5028_01175 PF02581 Thiamine monophosphate synthase H5028_01185 PF07690 Major Facilitator Superfamily H5028_01190 PF00436 Single-strand binding protein family H5028_01200 PF03591 AzlC protein H5028_01210 PF00324 Amino acid permease H5028_01215 PF00155 Aminotransferase class I and II H5028_01215 PF00392 Bacterial regulatory proteins, gntR family H5028_01220 PF00202 Aminotransferase class-III H5028_01225 PF00171 Aldehyde dehydrogenase family H5028_01230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_01235 PF00857 Isochorismatase family H5028_01240 PF02678 Pirin H5028_01240 PF05726 Pirin C-terminal cupin domain H5028_01245 PF01593 Flavin containing amine oxidoreductase H5028_01265 PF07690 Major Facilitator Superfamily H5028_01270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_01270 PF03466 LysR substrate binding domain H5028_01290 PF00248 Aldo/keto reductase family H5028_01295 PF12833 Helix-turn-helix domain H5028_01295 PF02311 AraC-like ligand binding domain H5028_01320 PF01638 HxlR-like helix-turn-helix H5028_01325 PF02525 Flavodoxin-like fold H5028_01355 PF02705 K+ potassium transporter H5028_01380 PF00230 Major intrinsic protein H5028_01395 PF00977 Histidine biosynthesis protein H5028_01400 PF01636 Phosphotransferase enzyme family H5028_01415 PF03992 Antibiotic biosynthesis monooxygenase H5028_01430 PF00977 Histidine biosynthesis protein H5028_01445 PF00117 Glutamine amidotransferase class-I H5028_01450 PF00475 Imidazoleglycerol-phosphate dehydratase H5028_01470 PF00583 Acetyltransferase (GNAT) family H5028_01475 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain H5028_01475 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain H5028_01485 PF00672 HAMP domain H5028_01485 PF00512 His Kinase A (phospho-acceptor) domain H5028_01485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_01490 PF00072 Response regulator receiver domain H5028_01490 PF00486 Transcriptional regulatory protein, C terminal H5028_01495 PF17674 HHH domain H5028_01495 PF00575 S1 RNA binding domain H5028_01495 PF09371 Tex-like protein N-terminal domain H5028_01495 PF16921 Tex protein YqgF-like domain H5028_01500 PF01740 STAS domain H5028_01500 PF00916 Sulfate permease family H5028_01505 PF00106 short chain dehydrogenase H5028_01510 PF01053 Cys/Met metabolism PLP-dependent enzyme H5028_01515 PF12848 ABC transporter H5028_01515 PF00005 ABC transporter H5028_01540 PF04191 Phospholipid methyltransferase H5028_01560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5028_01560 PF00529 HlyD membrane-fusion protein of T1SS H5028_01565 PF00873 AcrB/AcrD/AcrF family H5028_01570 PF01545 Cation efflux family H5028_01600 PF00324 Amino acid permease H5028_01615 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5028_01630 PF01795 MraW methylase family H5028_01640 PF00905 Penicillin binding protein transpeptidase domain H5028_01640 PF03717 Penicillin-binding Protein dimerisation domain H5028_01645 PF02875 Mur ligase family, glutamate ligase domain H5028_01645 PF01225 Mur ligase family, catalytic domain H5028_01645 PF08245 Mur ligase middle domain H5028_01650 PF01225 Mur ligase family, catalytic domain H5028_01650 PF02875 Mur ligase family, glutamate ligase domain H5028_01650 PF08245 Mur ligase middle domain H5028_01655 PF00953 Glycosyl transferase family 4 H5028_01665 PF13847 Methyltransferase domain H5028_01670 PF00912 Transglycosylase H5028_01670 PF00905 Penicillin binding protein transpeptidase domain H5028_01670 PF17092 Penicillin-binding protein OB-like domain H5028_01675 PF11104 Type IV pilus assembly protein PilM; H5028_01680 PF05137 Fimbrial assembly protein (PilN) H5028_01685 PF04350 Pilus assembly protein, PilO H5028_01695 PF07660 Secretin and TonB N terminus short domain H5028_01695 PF00263 Bacterial type II and III secretion system protein H5028_01695 PF03958 Bacterial type II/III secretion system short domain H5028_01695 PF11741 AMIN domain H5028_01700 PF01202 Shikimate kinase H5028_01705 PF01761 3-dehydroquinate synthase H5028_01715 PF01645 Conserved region in glutamate synthase H5028_01715 PF01493 GXGXG motif H5028_01715 PF00310 Glutamine amidotransferases class-II H5028_01715 PF04898 Glutamate synthase central domain H5028_01720 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_01720 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H5028_01730 PF04011 LemA family H5028_01735 PF04536 TPM domain H5028_01755 PF15864 Protein glycosylation ligase H5028_01755 PF04932 O-Antigen ligase H5028_01755 PF11846 Virulence factor membrane-bound polymerase, C-terminal H5028_01760 PF00210 Ferritin-like domain H5028_01765 PF04324 BFD-like [2Fe-2S] binding domain H5028_01770 PF01042 Endoribonuclease L-PSP H5028_01775 PF04607 Region found in RelA / SpoT proteins H5028_01775 PF02824 TGS domain H5028_01775 PF13291 ACT domain H5028_01785 PF01192 RNA polymerase Rpb6 H5028_01790 PF00625 Guanylate kinase H5028_01795 PF02401 LytB protein H5028_01835 PF00886 Ribosomal protein S16 H5028_01840 PF01782 RimM N-terminal domain H5028_01840 PF05239 PRC-barrel domain H5028_01845 PF01746 tRNA (Guanine-1)-methyltransferase H5028_01850 PF01245 Ribosomal protein L19 H5028_01855 PF00561 alpha/beta hydrolase fold H5028_01860 PF03280 Proteobacterial lipase chaperone protein H5028_01865 PF09157 Pseudouridine synthase II TruB, C-terminal H5028_01865 PF16198 tRNA pseudouridylate synthase B C-terminal domain H5028_01865 PF01509 TruB family pseudouridylate synthase (N terminal domain) H5028_01870 PF01925 Sulfite exporter TauE/SafE H5028_01880 PF00892 EamA-like transporter family H5028_01885 PF00892 EamA-like transporter family H5028_01890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5028_01890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5028_01895 PF01565 FAD binding domain H5028_01895 PF02913 FAD linked oxidases, C-terminal domain H5028_01905 PF03992 Antibiotic biosynthesis monooxygenase H5028_01910 PF02525 Flavodoxin-like fold H5028_01920 PF07690 Major Facilitator Superfamily H5028_01925 PF12805 FUSC-like inner membrane protein yccS H5028_01930 PF00080 Copper/zinc superoxide dismutase (SODC) H5028_01935 PF01594 AI-2E family transporter H5028_01940 PF13614 AAA domain H5028_01970 PF00324 Amino acid permease H5028_01975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase H5028_01975 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain H5028_01980 PF00202 Aminotransferase class-III H5028_01985 PF04958 Arginine N-succinyltransferase beta subunit H5028_01990 PF00171 Aldehyde dehydrogenase family H5028_01995 PF04996 Succinylarginine dihydrolase H5028_02000 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family H5028_02015 PF00082 Subtilase family H5028_02015 PF05922 Peptidase inhibitor I9 H5028_02030 PF03466 LysR substrate binding domain H5028_02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_02035 PF00892 EamA-like transporter family H5028_02045 PF05746 DALR anticodon binding domain H5028_02045 PF02092 Glycyl-tRNA synthetase beta subunit H5028_02050 PF02091 Glycyl-tRNA synthetase alpha subunit H5028_02075 PF00571 CBS domain H5028_02080 PF04024 PspC domain H5028_02090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_02090 PF12806 Acetyl-CoA dehydrogenase C-terminal like H5028_02090 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_02090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_02100 PF01488 Shikimate / quinate 5-dehydrogenase H5028_02100 PF08501 Shikimate dehydrogenase substrate binding domain H5028_02100 PF18317 Shikimate 5'-dehydrogenase C-terminal domain H5028_02105 PF01218 Coproporphyrinogen III oxidase H5028_02110 PF00925 GTP cyclohydrolase II H5028_02115 PF13292 1-deoxy-D-xylulose-5-phosphate synthase H5028_02115 PF02780 Transketolase, C-terminal domain H5028_02115 PF02779 Transketolase, pyrimidine binding domain H5028_02120 PF00459 Inositol monophosphatase family H5028_02125 PF03880 DbpA RNA binding domain H5028_02125 PF00270 DEAD/DEAH box helicase H5028_02125 PF12343 Cold shock protein DEAD box A H5028_02125 PF00271 Helicase conserved C-terminal domain H5028_02135 PF00005 ABC transporter H5028_02140 PF02405 Permease MlaE H5028_02150 PF05494 MlaC protein H5028_02160 PF01544 CorA-like Mg2+ transporter protein H5028_02165 PF03641 Possible lysine decarboxylase H5028_02170 PF00293 NUDIX domain H5028_02175 PF00156 Phosphoribosyl transferase domain H5028_02180 PF17191 RecG wedge domain H5028_02180 PF00271 Helicase conserved C-terminal domain H5028_02180 PF00270 DEAD/DEAH box helicase H5028_02195 PF01553 Acyltransferase H5028_02205 PF00375 Sodium:dicarboxylate symporter family H5028_02215 PF01926 50S ribosome-binding GTPase H5028_02220 PF02082 Transcriptional regulator H5028_02225 PF00175 Oxidoreductase NAD-binding domain H5028_02225 PF00970 Oxidoreductase FAD-binding domain H5028_02225 PF00042 Globin H5028_02230 PF05872 Bacterial protein of unknown function (DUF853) H5028_02235 PF01053 Cys/Met metabolism PLP-dependent enzyme H5028_02240 PF00117 Glutamine amidotransferase class-I H5028_02245 PF00338 Ribosomal protein S10p/S20e H5028_02250 PF00297 Ribosomal protein L3 H5028_02255 PF00573 Ribosomal protein L4/L1 family H5028_02260 PF00276 Ribosomal protein L23 H5028_02265 PF03947 Ribosomal Proteins L2, C-terminal domain H5028_02265 PF00181 Ribosomal Proteins L2, RNA binding domain H5028_02270 PF00203 Ribosomal protein S19 H5028_02275 PF00237 Ribosomal protein L22p/L17e H5028_02280 PF00189 Ribosomal protein S3, C-terminal domain H5028_02280 PF07650 KH domain H5028_02285 PF00252 Ribosomal protein L16p/L10e H5028_02290 PF00831 Ribosomal L29 protein H5028_02295 PF00366 Ribosomal protein S17 H5028_02300 PF00238 Ribosomal protein L14p/L23e H5028_02305 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 H5028_02305 PF00467 KOW motif H5028_02310 PF00673 ribosomal L5P family C-terminus H5028_02310 PF00281 Ribosomal protein L5 H5028_02315 PF00253 Ribosomal protein S14p/S29e H5028_02320 PF00410 Ribosomal protein S8 H5028_02325 PF00347 Ribosomal protein L6 H5028_02330 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast H5028_02335 PF03719 Ribosomal protein S5, C-terminal domain H5028_02335 PF00333 Ribosomal protein S5, N-terminal domain H5028_02340 PF00327 Ribosomal protein L30p/L7e H5028_02345 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A H5028_02350 PF00344 SecY translocase H5028_02355 PF00444 Ribosomal protein L36 H5028_02360 PF00416 Ribosomal protein S13/S18 H5028_02365 PF00411 Ribosomal protein S11 H5028_02370 PF01479 S4 domain H5028_02370 PF00163 Ribosomal protein S4/S9 N-terminal domain H5028_02375 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain H5028_02375 PF01000 RNA polymerase Rpb3/RpoA insert domain H5028_02375 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain H5028_02380 PF01196 Ribosomal protein L17 H5028_02385 PF00743 Flavin-binding monooxygenase-like H5028_02390 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_02390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_02390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_02395 PF03937 Flavinator of succinate dehydrogenase H5028_02425 PF09526 Probable metal-binding protein (DUF2387) H5028_02430 PF01432 Peptidase family M3 H5028_02435 PF00575 S1 RNA binding domain H5028_02435 PF00773 RNB domain H5028_02435 PF08206 Ribonuclease B OB domain H5028_02435 PF08461 Ribonuclease R winged-helix domain H5028_02435 PF17876 Cold shock domain H5028_02480 PF01557 Fumarylacetoacetate (FAA) hydrolase family H5028_02485 PF12833 Helix-turn-helix domain H5028_02490 PF00892 EamA-like transporter family H5028_02495 PF03631 Virulence factor BrkB H5028_02500 PF03358 NADPH-dependent FMN reductase H5028_02525 PF02130 Uncharacterized protein family UPF0054 H5028_02530 PF02562 PhoH-like protein H5028_02535 PF04055 Radical SAM superfamily H5028_02535 PF01938 TRAM domain H5028_02535 PF00919 Uncharacterized protein family UPF0004 H5028_02540 PF01464 Transglycosylase SLT domain H5028_02540 PF10145 Phage-related minor tail protein H5028_02540 PF01551 Peptidase family M23 H5028_02550 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H5028_02550 PF00056 lactate/malate dehydrogenase, NAD binding domain H5028_02570 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ H5028_02575 PF01066 CDP-alcohol phosphatidyltransferase H5028_02620 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_02620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_02620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_02625 PF00440 Bacterial regulatory proteins, tetR family H5028_02625 PF17932 Tetracyclin repressor-like, C-terminal domain H5028_02640 PF01039 Carboxyl transferase domain H5028_02645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_02645 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_02645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_02655 PF00289 Biotin carboxylase, N-terminal domain H5028_02655 PF02785 Biotin carboxylase C-terminal domain H5028_02655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5028_02655 PF00364 Biotin-requiring enzyme H5028_02665 PF04386 Stringent starvation protein B H5028_02670 PF00043 Glutathione S-transferase, C-terminal domain H5028_02670 PF13417 Glutathione S-transferase, N-terminal domain H5028_02675 PF00380 Ribosomal protein S9/S16 H5028_02680 PF00572 Ribosomal protein L13 H5028_02685 PF04166 Pyridoxal phosphate biosynthetic protein PdxA H5028_02690 PF00398 Ribosomal RNA adenine dimethylase H5028_02695 PF00149 Calcineurin-like phosphoesterase H5028_02715 PF01926 50S ribosome-binding GTPase H5028_02715 PF13167 GTP-binding GTPase N-terminal H5028_02715 PF16360 GTP-binding GTPase Middle Region H5028_02730 PF10518 TAT (twin-arginine translocation) pathway signal sequence H5028_02730 PF00149 Calcineurin-like phosphoesterase H5028_02735 PF01389 OmpA-like transmembrane domain H5028_02735 PF00691 OmpA family H5028_02750 PF00905 Penicillin binding protein transpeptidase domain H5028_02810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5028_02810 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_02820 PF00753 Metallo-beta-lactamase superfamily H5028_02820 PF04273 Putative phosphatase (DUF442) H5028_02825 PF00561 alpha/beta hydrolase fold H5028_02830 PF00085 Thioredoxin H5028_02835 PF03061 Thioesterase superfamily H5028_02845 PF04461 Protein of unknown function (DUF520) H5028_02855 PF01266 FAD dependent oxidoreductase H5028_02855 PF05430 S-adenosyl-L-methionine-dependent methyltransferase H5028_02865 PF03795 YCII-related domain H5028_02870 PF04279 Intracellular septation protein A H5028_02875 PF02811 PHP domain H5028_02880 PF01062 Bestrophin, RFP-TM, chloride channel H5028_02885 PF04002 RadC-like JAB domain H5028_02890 PF04127 DNA / pantothenate metabolism flavoprotein H5028_02890 PF02441 Flavoprotein H5028_02895 PF07549 SecD/SecF GG Motif H5028_02895 PF02355 Protein export membrane protein H5028_02900 PF07549 SecD/SecF GG Motif H5028_02900 PF02355 Protein export membrane protein H5028_02900 PF13721 SecD export protein N-terminal TM region H5028_02905 PF02699 Preprotein translocase subunit H5028_02910 PF01702 Queuine tRNA-ribosyltransferase H5028_02925 PF02547 Queuosine biosynthesis protein H5028_02935 PF07689 KaiB domain H5028_02935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_02935 PF00512 His Kinase A (phospho-acceptor) domain H5028_02940 PF08335 GlnD PII-uridylyltransferase H5028_02940 PF03710 Glutamate-ammonia ligase adenylyltransferase H5028_02945 PF01063 Amino-transferase class IV H5028_02960 PF01522 Polysaccharide deacetylase H5028_02965 PF00535 Glycosyl transferase family 2 H5028_02970 PF13439 Glycosyltransferase Family 4 H5028_02970 PF00534 Glycosyl transferases group 1 H5028_02995 PF17102 Stealth protein CR3, conserved region 3 H5028_02995 PF17101 Stealth protein CR1, conserved region 1 H5028_02995 PF11380 Stealth protein CR2, conserved region 2 H5028_03000 PF01336 OB-fold nucleic acid binding domain H5028_03000 PF00152 tRNA synthetases class II (D, K and N) H5028_03000 PF02938 GAD domain H5028_03010 PF00593 TonB dependent receptor H5028_03010 PF07715 TonB-dependent Receptor Plug Domain H5028_03030 PF06146 Phosphate-starvation-inducible E H5028_03035 PF02798 Glutathione S-transferase, N-terminal domain H5028_03035 PF00043 Glutathione S-transferase, C-terminal domain H5028_03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_03040 PF03466 LysR substrate binding domain H5028_03045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_03045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_03045 PF12806 Acetyl-CoA dehydrogenase C-terminal like H5028_03045 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_03050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_03050 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_03050 PF12806 Acetyl-CoA dehydrogenase C-terminal like H5028_03050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_03060 PF00512 His Kinase A (phospho-acceptor) domain H5028_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_03060 PF00672 HAMP domain H5028_03065 PF00072 Response regulator receiver domain H5028_03065 PF00486 Transcriptional regulatory protein, C terminal H5028_03070 PF02696 Uncharacterized ACR, YdiU/UPF0061 family H5028_03090 PF01923 Cobalamin adenosyltransferase H5028_03095 PF07715 TonB-dependent Receptor Plug Domain H5028_03095 PF00593 TonB dependent receptor H5028_03100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase H5028_03105 PF00291 Pyridoxal-phosphate dependent enzyme H5028_03130 PF00290 Tryptophan synthase alpha chain H5028_03135 PF01039 Carboxyl transferase domain H5028_03140 PF08245 Mur ligase middle domain H5028_03140 PF02875 Mur ligase family, glutamate ligase domain H5028_03155 PF00753 Metallo-beta-lactamase superfamily H5028_03160 PF00578 AhpC/TSA family H5028_03160 PF10417 C-terminal domain of 1-Cys peroxiredoxin H5028_03165 PF02810 SEC-C motif H5028_03165 PF07516 SecA Wing and Scaffold domain H5028_03165 PF01043 SecA preprotein cross-linking domain H5028_03165 PF07517 SecA DEAD-like domain H5028_03175 PF07690 Major Facilitator Superfamily H5028_03175 PF00083 Sugar (and other) transporter H5028_03180 PF03006 Haemolysin-III related H5028_03205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5028_03205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5028_03205 PF00378 Enoyl-CoA hydratase/isomerase H5028_03210 PF00108 Thiolase, N-terminal domain H5028_03210 PF02803 Thiolase, C-terminal domain H5028_03215 PF02311 AraC-like ligand binding domain H5028_03215 PF12833 Helix-turn-helix domain H5028_03220 PF02515 CoA-transferase family III H5028_03225 PF04966 Carbohydrate-selective porin, OprB family H5028_03230 PF01011 PQQ enzyme repeat H5028_03235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5028_03235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5028_03245 PF00893 Small Multidrug Resistance protein H5028_03255 PF00108 Thiolase, N-terminal domain H5028_03255 PF02803 Thiolase, C-terminal domain H5028_03265 PF00691 OmpA family H5028_03265 PF13505 Outer membrane protein beta-barrel domain H5028_03275 PF01139 tRNA-splicing ligase RtcB H5028_03280 PF00324 Amino acid permease H5028_03285 PF08468 Methyltransferase small domain N-terminal H5028_03285 PF05175 Methyltransferase small domain H5028_03290 PF00860 Permease family H5028_03295 PF00009 Elongation factor Tu GTP binding domain H5028_03295 PF00679 Elongation factor G C-terminus H5028_03295 PF03144 Elongation factor Tu domain 2 H5028_03300 PF01741 Large-conductance mechanosensitive channel, MscL H5028_03315 PF06827 Zinc finger found in FPG and IleRS H5028_03315 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain H5028_03315 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain H5028_03320 PF02245 Methylpurine-DNA glycosylase (MPG) H5028_03325 PF07715 TonB-dependent Receptor Plug Domain H5028_03325 PF00593 TonB dependent receptor H5028_03340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5028_03355 PF13098 Thioredoxin-like domain H5028_03355 PF10411 Disulfide bond isomerase protein N-terminus H5028_03360 PF01571 Aminomethyltransferase folate-binding domain H5028_03370 PF04343 Protein of unknown function, DUF488 H5028_03375 PF03831 PhnA domain H5028_03375 PF08274 PhnA Zinc-Ribbon H5028_03380 PF07411 Domain of unknown function (DUF1508) H5028_03385 PF03129 Anticodon binding domain H5028_03385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5028_03385 PF04073 Aminoacyl-tRNA editing domain H5028_03390 PF00873 AcrB/AcrD/AcrF family H5028_03405 PF00072 Response regulator receiver domain H5028_03410 PF00072 Response regulator receiver domain H5028_03415 PF01584 CheW-like domain H5028_03420 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term H5028_03420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5028_03425 PF01584 CheW-like domain H5028_03425 PF01627 Hpt domain H5028_03425 PF00072 Response regulator receiver domain H5028_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_03435 PF07687 Peptidase dimerisation domain H5028_03435 PF01546 Peptidase family M20/M25/M40 H5028_03440 PF08085 Entericidin EcnA/B family H5028_03450 PF04304 Protein of unknown function (DUF454) H5028_03455 PF03734 L,D-transpeptidase catalytic domain H5028_03455 PF17969 L,D-transpeptidase C-terminal domain H5028_03495 PF00667 FAD binding domain H5028_03495 PF00258 Flavodoxin H5028_03495 PF00175 Oxidoreductase NAD-binding domain H5028_03505 PF12805 FUSC-like inner membrane protein yccS H5028_03510 PF07690 Major Facilitator Superfamily H5028_03515 PF00881 Nitroreductase family H5028_03530 PF01235 Sodium:alanine symporter family H5028_03535 PF01734 Patatin-like phospholipase H5028_03540 PF00291 Pyridoxal-phosphate dependent enzyme H5028_03540 PF13291 ACT domain H5028_03545 PF05992 SbmA/BacA-like family H5028_03585 PF02934 GatB/GatE catalytic domain H5028_03585 PF02637 GatB domain H5028_03590 PF01425 Amidase H5028_03595 PF02686 Glu-tRNAGln amidotransferase C subunit H5028_03605 PF04085 rod shape-determining protein MreC H5028_03610 PF04093 rod shape-determining protein MreD H5028_03615 PF02545 Maf-like protein H5028_03620 PF10150 Ribonuclease E/G family H5028_03620 PF00575 S1 RNA binding domain H5028_03630 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain H5028_03630 PF06974 Protein of unknown function (DUF1298) H5028_03635 PF01507 Phosphoadenosine phosphosulfate reductase family H5028_03650 PF02525 Flavodoxin-like fold H5028_03670 PF02673 Bacitracin resistance protein BacA H5028_03675 PF12833 Helix-turn-helix domain H5028_03675 PF06719 AraC-type transcriptional regulator N-terminus H5028_03680 PF09277 Erythronolide synthase, docking H5028_03680 PF14765 Polyketide synthase dehydratase H5028_03680 PF00550 Phosphopantetheine attachment site H5028_03680 PF08659 KR domain H5028_03680 PF02801 Beta-ketoacyl synthase, C-terminal domain H5028_03680 PF00109 Beta-ketoacyl synthase, N-terminal domain H5028_03680 PF16197 Ketoacyl-synthetase C-terminal extension H5028_03680 PF08990 Erythronolide synthase docking H5028_03680 PF08240 Alcohol dehydrogenase GroES-like domain H5028_03680 PF00698 Acyl transferase domain H5028_03685 PF01965 DJ-1/PfpI family H5028_03695 PF00324 Amino acid permease H5028_03700 PF04303 PrpF protein H5028_03705 PF00348 Polyprenyl synthetase H5028_03710 PF04237 YjbR H5028_03715 PF01145 SPFH domain / Band 7 family H5028_03725 PF01734 Patatin-like phospholipase H5028_03745 PF08019 Phosphoethanolamine transferase EptA/EptB H5028_03745 PF00884 Sulfatase H5028_03750 PF00486 Transcriptional regulatory protein, C terminal H5028_03750 PF00072 Response regulator receiver domain H5028_03755 PF08521 Two-component sensor kinase N-terminal H5028_03755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_03755 PF00512 His Kinase A (phospho-acceptor) domain H5028_03765 PF00909 Ammonium Transporter Family H5028_03770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_03770 PF03466 LysR substrate binding domain H5028_03790 PF08264 Anticodon-binding domain of tRNA H5028_03790 PF10458 Valyl tRNA synthetase tRNA binding arm H5028_03790 PF00133 tRNA synthetases class I (I, L, M and V) H5028_03810 PF01906 Putative heavy-metal-binding H5028_03815 PF01906 Putative heavy-metal-binding H5028_03820 PF02321 Outer membrane efflux protein H5028_03825 PF00873 AcrB/AcrD/AcrF family H5028_03830 PF00529 HlyD membrane-fusion protein of T1SS H5028_03830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5028_03835 PF01569 PAP2 superfamily H5028_03845 PF00348 Polyprenyl synthetase H5028_03855 PF00829 Ribosomal prokaryotic L21 protein H5028_03860 PF01016 Ribosomal L27 protein H5028_03865 PF03548 Outer membrane lipoprotein carrier protein LolA H5028_03875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5028_03875 PF02403 Seryl-tRNA synthetase N-terminal domain H5028_03880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5028_03880 PF10414 Sirohaem synthase dimerisation region H5028_03880 PF14824 Sirohaem biosynthesis protein central H5028_03885 PF00588 SpoU rRNA Methylase family H5028_03890 PF01638 HxlR-like helix-turn-helix H5028_03895 PF03358 NADPH-dependent FMN reductase H5028_03900 PF13520 Amino acid permease H5028_03905 PF00465 Iron-containing alcohol dehydrogenase H5028_03915 PF03099 Biotin/lipoate A/B protein ligase family H5028_03920 PF04359 Protein of unknown function (DUF493) H5028_03925 PF04546 Sigma-70, non-essential region H5028_03925 PF00140 Sigma-70 factor, region 1.2 H5028_03925 PF03979 Sigma-70 factor, region 1.1 H5028_03925 PF04545 Sigma-70, region 4 H5028_03925 PF04539 Sigma-70 region 3 H5028_03925 PF04542 Sigma-70 region 2 H5028_03945 PF17773 UPF0176 acylphosphatase like domain H5028_03945 PF00581 Rhodanese-like domain H5028_03960 PF00285 Citrate synthase, C-terminal domain H5028_03965 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H5028_03970 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H5028_03975 PF00890 FAD binding domain H5028_03975 PF02910 Fumarate reductase flavoprotein C-term H5028_03980 PF13085 2Fe-2S iron-sulfur cluster binding domain H5028_03995 PF16870 2-oxoglutarate dehydrogenase C-terminal H5028_03995 PF00676 Dehydrogenase E1 component H5028_03995 PF16078 2-oxoglutarate dehydrogenase N-terminus H5028_03995 PF02779 Transketolase, pyrimidine binding domain H5028_04000 PF00364 Biotin-requiring enzyme H5028_04000 PF02817 e3 binding domain H5028_04000 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5028_04005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5028_04005 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_04010 PF08442 ATP-grasp domain H5028_04010 PF00549 CoA-ligase H5028_04015 PF00549 CoA-ligase H5028_04015 PF02629 CoA binding domain H5028_04020 PF00579 tRNA synthetases class I (W and Y) H5028_04025 PF05661 Protein of unknown function (DUF808) H5028_04030 PF04228 Putative neutral zinc metallopeptidase H5028_04035 PF00999 Sodium/hydrogen exchanger family H5028_04065 PF09587 Bacterial capsule synthesis protein PGA_cap H5028_04075 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H5028_04080 PF00582 Universal stress protein family H5028_04085 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_04090 PF01272 Transcription elongation factor, GreA/GreB, C-term H5028_04090 PF03449 Transcription elongation factor, N-terminal H5028_04095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5028_04095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain H5028_04095 PF02142 MGS-like domain H5028_04100 PF00117 Glutamine amidotransferase class-I H5028_04100 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain H5028_04115 PF01985 CRS1 / YhbY (CRM) domain H5028_04120 PF01728 FtsJ-like methyltransferase H5028_04125 PF01434 Peptidase family M41 H5028_04125 PF06480 FtsH Extracellular H5028_04125 PF00004 ATPase family associated with various cellular activities (AAA) H5028_04125 PF17862 AAA+ lid domain H5028_04130 PF00809 Pterin binding enzyme H5028_04150 PF09423 PhoD-like phosphatase H5028_04150 PF16655 PhoD-like phosphatase, N-terminal domain H5028_04165 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain H5028_04165 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain H5028_04180 PF00083 Sugar (and other) transporter H5028_04185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H5028_04185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H5028_04190 PF16901 C-terminal domain of alpha-glycerophosphate oxidase H5028_04190 PF01266 FAD dependent oxidoreductase H5028_04195 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain H5028_04195 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain H5028_04200 PF00781 Diacylglycerol kinase catalytic domain H5028_04205 PF00149 Calcineurin-like phosphoesterase H5028_04215 PF13936 Helix-turn-helix domain H5028_04215 PF00665 Integrase core domain H5028_04225 PF00166 Chaperonin 10 Kd subunit H5028_04230 PF00118 TCP-1/cpn60 chaperonin family H5028_04235 PF01219 Prokaryotic diacylglycerol kinase H5028_04245 PF03009 Glycerophosphoryl diester phosphodiesterase family H5028_04250 PF00873 AcrB/AcrD/AcrF family H5028_04260 PF01435 Peptidase family M48 H5028_04265 PF01464 Transglycosylase SLT domain H5028_04270 PF01171 PP-loop family H5028_04280 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5028_04280 PF01464 Transglycosylase SLT domain H5028_04285 PF03449 Transcription elongation factor, N-terminal H5028_04285 PF01272 Transcription elongation factor, GreA/GreB, C-term H5028_04300 PF00501 AMP-binding enzyme H5028_04300 PF00975 Thioesterase domain H5028_04300 PF00550 Phosphopantetheine attachment site H5028_04300 PF00668 Condensation domain H5028_04300 PF13193 AMP-binding enzyme C-terminal domain H5028_04325 PF00881 Nitroreductase family H5028_04340 PF02595 Glycerate kinase family H5028_04345 PF00384 Molybdopterin oxidoreductase H5028_04350 PF02634 FdhD/NarQ family H5028_04355 PF06803 Protein of unknown function (DUF1232) H5028_04360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5028_04360 PF11890 Domain of unknown function (DUF3410) H5028_04360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5028_04365 PF00152 tRNA synthetases class II (D, K and N) H5028_04375 PF18073 Rubredoxin metal binding domain H5028_04380 PF00324 Amino acid permease H5028_04390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H5028_04390 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H5028_04395 PF01678 Diaminopimelate epimerase H5028_04400 PF01810 LysE type translocator H5028_04405 PF02899 Phage integrase, N-terminal SAM-like domain H5028_04405 PF00589 Phage integrase family H5028_04410 PF01012 Electron transfer flavoprotein domain H5028_04415 PF01012 Electron transfer flavoprotein domain H5028_04415 PF00766 Electron transfer flavoprotein FAD-binding domain H5028_04420 PF00521 DNA gyrase/topoisomerase IV, subunit A H5028_04420 PF03989 DNA gyrase C-terminal domain, beta-propeller H5028_04435 PF00535 Glycosyl transferase family 2 H5028_04455 PF13533 Biotin-lipoyl like H5028_04465 PF00266 Aminotransferase class-V H5028_04480 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 H5028_04490 PF12704 MacB-like periplasmic core domain H5028_04490 PF02687 FtsX-like permease family H5028_04495 PF00005 ABC transporter H5028_04500 PF00753 Metallo-beta-lactamase superfamily H5028_04500 PF13567 Domain of unknown function (DUF4131) H5028_04500 PF03772 Competence protein H5028_04510 PF06965 Na+/H+ antiporter 1 H5028_04510 PF01343 Peptidase family S49 H5028_04515 PF12697 Alpha/beta hydrolase family H5028_04520 PF00551 Formyl transferase H5028_04525 PF00586 AIR synthase related protein, N-terminal domain H5028_04525 PF02769 AIR synthase related protein, C-terminal domain H5028_04530 PF01594 AI-2E family transporter H5028_04535 PF11638 DnaA N-terminal domain H5028_04535 PF08299 Bacterial dnaA protein helix-turn-helix H5028_04535 PF00308 Bacterial dnaA protein H5028_04565 PF00588 SpoU rRNA Methylase family H5028_04565 PF08032 RNA 2'-O ribose methyltransferase substrate binding H5028_04570 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain H5028_04580 PF00691 OmpA family H5028_04585 PF04052 TolB amino-terminal domain H5028_04585 PF07676 WD40-like Beta Propeller Repeat H5028_04595 PF02472 Biopolymer transport protein ExbD/TolR H5028_04600 PF01618 MotA/TolQ/ExbB proton channel family H5028_04605 PF03061 Thioesterase superfamily H5028_04610 PF07687 Peptidase dimerisation domain H5028_04610 PF01546 Peptidase family M20/M25/M40 H5028_04615 PF05496 Holliday junction DNA helicase RuvB P-loop domain H5028_04615 PF05491 RuvB C-terminal winged helix domain H5028_04615 PF17864 RuvB AAA lid domain H5028_04620 PF01330 RuvA N terminal domain H5028_04620 PF07499 RuvA, C-terminal domain H5028_04625 PF01966 HD domain H5028_04630 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal H5028_04630 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain H5028_04630 PF02769 AIR synthase related protein, C-terminal domain H5028_04635 PF07690 Major Facilitator Superfamily H5028_04640 PF01784 NIF3 (NGG1p interacting factor 3) H5028_04645 PF00378 Enoyl-CoA hydratase/isomerase H5028_04650 PF00293 NUDIX domain H5028_04650 PF01467 Cytidylyltransferase-like H5028_04660 PF00578 AhpC/TSA family H5028_04675 PF06508 Queuosine biosynthesis protein QueC H5028_04685 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_04685 PF14602 Hexapeptide repeat of succinyl-transferase H5028_04685 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal H5028_04700 PF03466 LysR substrate binding domain H5028_04700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_04705 PF00005 ABC transporter H5028_04705 PF12857 TOBE-like domain H5028_04710 PF00528 Binding-protein-dependent transport system inner membrane component H5028_04715 PF00528 Binding-protein-dependent transport system inner membrane component H5028_04730 PF01063 Amino-transferase class IV H5028_04735 PF02618 YceG-like family H5028_04740 PF02223 Thymidylate kinase H5028_04750 PF02910 Fumarate reductase flavoprotein C-term H5028_04750 PF00890 FAD binding domain H5028_04755 PF13180 PDZ domain H5028_04765 PF00679 Elongation factor G C-terminus H5028_04765 PF00009 Elongation factor Tu GTP binding domain H5028_04765 PF03144 Elongation factor Tu domain 2 H5028_04765 PF06421 GTP-binding protein LepA C-terminus H5028_04770 PF10502 Signal peptidase, peptidase S26 H5028_04780 PF14622 Ribonuclease-III-like H5028_04780 PF00035 Double-stranded RNA binding motif H5028_04785 PF07650 KH domain H5028_04785 PF01926 50S ribosome-binding GTPase H5028_04795 PF11967 Recombination protein O N terminal H5028_04795 PF02565 Recombination protein O C terminal H5028_04800 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ H5028_04805 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) H5028_04810 PF00106 short chain dehydrogenase H5028_04840 PF00155 Aminotransferase class I and II H5028_04850 PF17151 Periplasmic sensor domain H5028_04850 PF00990 Diguanylate cyclase, GGDEF domain H5028_04860 PF17757 UvrB interaction domain H5028_04860 PF12344 Ultra-violet resistance protein B H5028_04860 PF02151 UvrB/uvrC motif H5028_04860 PF00271 Helicase conserved C-terminal domain H5028_04860 PF04851 Type III restriction enzyme, res subunit H5028_04870 PF00892 EamA-like transporter family H5028_04875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5028_04875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5028_04890 PF01926 50S ribosome-binding GTPase H5028_04890 PF01018 GTP1/OBG H5028_04895 PF00696 Amino acid kinase family H5028_04895 PF01472 PUA domain H5028_04905 PF07759 Protein of unknown function (DUF1615) H5028_04910 PF01207 Dihydrouridine synthase (Dus) H5028_04915 PF03060 Nitronate monooxygenase H5028_04930 PF02350 UDP-N-acetylglucosamine 2-epimerase H5028_04960 PF00875 DNA photolyase H5028_04960 PF03441 FAD binding domain of DNA photolyase H5028_04965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5028_04970 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_04975 PF00768 D-alanyl-D-alanine carboxypeptidase H5028_04975 PF07943 Penicillin-binding protein 5, C-terminal domain H5028_04985 PF03971 Monomeric isocitrate dehydrogenase H5028_04990 PF00849 RNA pseudouridylate synthase H5028_04995 PF00180 Isocitrate/isopropylmalate dehydrogenase H5028_05015 PF06779 Uncharacterised MFS-type transporter YbfB H5028_05020 PF03466 LysR substrate binding domain H5028_05020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_05025 PF00375 Sodium:dicarboxylate symporter family H5028_05030 PF02567 Phenazine biosynthesis-like protein H5028_05035 PF05193 Peptidase M16 inactive domain H5028_05035 PF00675 Insulinase (Peptidase family M16) H5028_05060 PF02581 Thiamine monophosphate synthase H5028_05065 PF00202 Aminotransferase class-III H5028_05075 PF00849 RNA pseudouridylate synthase H5028_05080 PF00271 Helicase conserved C-terminal domain H5028_05080 PF18337 RapA N-terminal Tudor like domain H5028_05080 PF18339 RapA N-terminal Tudor like domain 1 H5028_05080 PF00176 SNF2 family N-terminal domain H5028_05080 PF12137 RNA polymerase recycling family C-terminal H5028_05090 PF00440 Bacterial regulatory proteins, tetR family H5028_05095 PF00111 2Fe-2S iron-sulfur cluster binding domain H5028_05095 PF00175 Oxidoreductase NAD-binding domain H5028_05095 PF00970 Oxidoreductase FAD-binding domain H5028_05100 PF00487 Fatty acid desaturase H5028_05110 PF00440 Bacterial regulatory proteins, tetR family H5028_05110 PF17754 MftR C-terminal domain H5028_05120 PF00202 Aminotransferase class-III H5028_05125 PF00282 Pyridoxal-dependent decarboxylase conserved domain H5028_05130 PF00171 Aldehyde dehydrogenase family H5028_05135 PF01037 Lrp/AsnC ligand binding domain H5028_05140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5028_05140 PF00205 Thiamine pyrophosphate enzyme, central domain H5028_05140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5028_05145 PF00324 Amino acid permease H5028_05150 PF12849 PBP superfamily domain H5028_05155 PF00528 Binding-protein-dependent transport system inner membrane component H5028_05160 PF00528 Binding-protein-dependent transport system inner membrane component H5028_05165 PF00005 ABC transporter H5028_05170 PF01343 Peptidase family S49 H5028_05170 PF08496 Peptidase family S49 N-terminal H5028_05180 PF00872 Transposase, Mutator family H5028_05190 PF08328 Adenylosuccinate lyase C-terminal H5028_05190 PF00206 Lyase H5028_05195 PF04356 Protein of unknown function (DUF489) H5028_05205 PF00293 NUDIX domain H5028_05205 PF13344 Haloacid dehalogenase-like hydrolase H5028_05210 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_05215 PF07943 Penicillin-binding protein 5, C-terminal domain H5028_05215 PF00768 D-alanyl-D-alanine carboxypeptidase H5028_05230 PF01975 Survival protein SurE H5028_05235 PF01551 Peptidase family M23 H5028_05235 PF01476 LysM domain H5028_05240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_05240 PF03466 LysR substrate binding domain H5028_05245 PF05362 Lon protease (S16) C-terminal proteolytic domain H5028_05245 PF13654 AAA domain H5028_05250 PF07690 Major Facilitator Superfamily H5028_05255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5028_05260 PF13593 SBF-like CPA transporter family (DUF4137) H5028_05265 PF01197 Ribosomal protein L31 H5028_05280 PF04055 Radical SAM superfamily H5028_05285 PF01132 Elongation factor P (EF-P) OB domain H5028_05285 PF08207 Elongation factor P (EF-P) KOW-like domain H5028_05285 PF09285 Elongation factor P, C-terminal H5028_05290 PF02554 Carbon starvation protein CstA H5028_05290 PF13722 5TM C-terminal transporter carbon starvation CstA H5028_05295 PF04328 Selenoprotein, putative H5028_05325 PF06018 CodY GAF-like domain H5028_05325 PF17853 GGDEF-like domain H5028_05325 PF13556 PucR C-terminal helix-turn-helix domain H5028_05340 PF00171 Aldehyde dehydrogenase family H5028_05345 PF00324 Amino acid permease H5028_05355 PF03466 LysR substrate binding domain H5028_05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_05360 PF02028 BCCT, betaine/carnitine/choline family transporter H5028_05365 PF02028 BCCT, betaine/carnitine/choline family transporter H5028_05370 PF00848 Ring hydroxylating alpha subunit (catalytic domain) H5028_05370 PF00355 Rieske [2Fe-2S] domain H5028_05375 PF00171 Aldehyde dehydrogenase family H5028_05380 PF18113 Rubredoxin binding C-terminal domain H5028_05380 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_05385 PF01266 FAD dependent oxidoreductase H5028_05385 PF05430 S-adenosyl-L-methionine-dependent methyltransferase H5028_05405 PF00892 EamA-like transporter family H5028_05415 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system H5028_05420 PF00083 Sugar (and other) transporter H5028_05425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H5028_05425 PF13378 Enolase C-terminal domain-like H5028_05430 PF09277 Erythronolide synthase, docking H5028_05430 PF08240 Alcohol dehydrogenase GroES-like domain H5028_05430 PF00698 Acyl transferase domain H5028_05430 PF00109 Beta-ketoacyl synthase, N-terminal domain H5028_05430 PF08659 KR domain H5028_05430 PF00550 Phosphopantetheine attachment site H5028_05430 PF14765 Polyketide synthase dehydratase H5028_05430 PF16197 Ketoacyl-synthetase C-terminal extension H5028_05430 PF02801 Beta-ketoacyl synthase, C-terminal domain H5028_05430 PF08990 Erythronolide synthase docking H5028_05435 PF00440 Bacterial regulatory proteins, tetR family H5028_05455 PF17954 Quercetinase C-terminal cupin domain H5028_05455 PF02678 Pirin H5028_05465 PF08348 YheO-like PAS domain H5028_05465 PF13309 HTH domain H5028_05475 PF00668 Condensation domain H5028_05475 PF00501 AMP-binding enzyme H5028_05475 PF00550 Phosphopantetheine attachment site H5028_05475 PF13193 AMP-binding enzyme C-terminal domain H5028_05480 PF00550 Phosphopantetheine attachment site H5028_05480 PF13193 AMP-binding enzyme C-terminal domain H5028_05480 PF00668 Condensation domain H5028_05480 PF00975 Thioesterase domain H5028_05480 PF00501 AMP-binding enzyme H5028_05485 PF01032 FecCD transport family H5028_05490 PF01032 FecCD transport family H5028_05495 PF00005 ABC transporter H5028_05500 PF01497 Periplasmic binding protein H5028_05505 PF00593 TonB dependent receptor H5028_05505 PF07715 TonB-dependent Receptor Plug Domain H5028_05510 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) H5028_05515 PF00550 Phosphopantetheine attachment site H5028_05515 PF00668 Condensation domain H5028_05515 PF00501 AMP-binding enzyme H5028_05520 PF13193 AMP-binding enzyme C-terminal domain H5028_05520 PF00501 AMP-binding enzyme H5028_05525 PF00857 Isochorismatase family H5028_05525 PF00550 Phosphopantetheine attachment site H5028_05530 PF00282 Pyridoxal-dependent decarboxylase conserved domain H5028_05540 PF00005 ABC transporter H5028_05545 PF00005 ABC transporter H5028_05550 PF00975 Thioesterase domain H5028_05560 PF00425 chorismate binding enzyme H5028_05570 PF01208 Uroporphyrinogen decarboxylase (URO-D) H5028_05575 PF05675 Protein of unknown function (DUF817) H5028_05590 PF00144 Beta-lactamase H5028_05600 PF01227 GTP cyclohydrolase I H5028_05605 PF00111 2Fe-2S iron-sulfur cluster binding domain H5028_05605 PF01799 [2Fe-2S] binding domain H5028_05610 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase H5028_05610 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain H5028_05625 PF00218 Indole-3-glycerol phosphate synthase H5028_05630 PF00591 Glycosyl transferase family, a/b domain H5028_05630 PF02885 Glycosyl transferase family, helical bundle domain H5028_05635 PF00593 TonB dependent receptor H5028_05635 PF07715 TonB-dependent Receptor Plug Domain H5028_05640 PF11838 ERAP1-like C-terminal domain H5028_05640 PF01433 Peptidase family M1 domain H5028_05645 PF00117 Glutamine amidotransferase class-I H5028_05655 PF00854 POT family H5028_05660 PF00120 Glutamine synthetase, catalytic domain H5028_05660 PF03951 Glutamine synthetase, beta-Grasp domain H5028_05665 PF04345 Chorismate lyase H5028_05670 PF01040 UbiA prenyltransferase family H5028_05705 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H5028_05705 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H5028_05710 PF01784 NIF3 (NGG1p interacting factor 3) H5028_05715 PF13180 PDZ domain H5028_05720 PF12627 Probable RNA and SrmB- binding site of polymerase A H5028_05720 PF01743 Poly A polymerase head domain H5028_05725 PF01515 Phosphate acetyl/butaryl transferase H5028_05725 PF03949 Malic enzyme, NAD binding domain H5028_05725 PF00390 Malic enzyme, N-terminal domain H5028_05730 PF03707 Bacterial signalling protein N terminal repeat H5028_05730 PF00990 Diguanylate cyclase, GGDEF domain H5028_05730 PF00563 EAL domain H5028_05735 PF04452 RNA methyltransferase H5028_05740 PF02219 Methylenetetrahydrofolate reductase H5028_05745 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain H5028_05745 PF05221 S-adenosyl-L-homocysteine hydrolase H5028_05760 PF09317 Domain of unknown function (DUF1974) H5028_05760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_05760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_05765 PF04055 Radical SAM superfamily H5028_05770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5028_05770 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_05780 PF07690 Major Facilitator Superfamily H5028_05790 PF00557 Metallopeptidase family M24 H5028_05795 PF00318 Ribosomal protein S2 H5028_05800 PF00889 Elongation factor TS H5028_05810 PF12833 Helix-turn-helix domain H5028_05830 PF05036 Sporulation related domain H5028_05830 PF03330 Lytic transglycolase H5028_05835 PF13406 Transglycosylase SLT domain H5028_05840 PF01098 Cell cycle protein H5028_05850 PF14489 QueF-like protein H5028_05850 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term H5028_05855 PF01061 ABC-2 type transporter H5028_05860 PF00005 ABC transporter H5028_05890 PF00464 Serine hydroxymethyltransferase H5028_05895 PF02321 Outer membrane efflux protein H5028_05900 PF00873 AcrB/AcrD/AcrF family H5028_05905 PF13533 Biotin-lipoyl like H5028_05910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_05910 PF03466 LysR substrate binding domain H5028_05915 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5028_05920 PF00528 Binding-protein-dependent transport system inner membrane component H5028_05925 PF00528 Binding-protein-dependent transport system inner membrane component H5028_05930 PF00005 ABC transporter H5028_05935 PF00893 Small Multidrug Resistance protein H5028_05940 PF00037 4Fe-4S binding domain H5028_05945 PF01136 Peptidase family U32 H5028_05945 PF16325 Peptidase family U32 C-terminal domain H5028_05950 PF00155 Aminotransferase class I and II H5028_05950 PF00392 Bacterial regulatory proteins, gntR family H5028_05955 PF02567 Phenazine biosynthesis-like protein H5028_05960 PF00175 Oxidoreductase NAD-binding domain H5028_05960 PF00970 Oxidoreductase FAD-binding domain H5028_05965 PF01980 tRNA-methyltransferase O H5028_05965 PF18389 TrmO C-terminal domain H5028_05975 PF00437 Type II/IV secretion system protein H5028_05975 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H5028_05985 PF00486 Transcriptional regulatory protein, C terminal H5028_05985 PF00072 Response regulator receiver domain H5028_05990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_05990 PF00512 His Kinase A (phospho-acceptor) domain H5028_05990 PF08521 Two-component sensor kinase N-terminal H5028_06000 PF00293 NUDIX domain H5028_06010 PF00905 Penicillin binding protein transpeptidase domain H5028_06010 PF14814 Bifunctional transglycosylase second domain H5028_06010 PF00912 Transglycosylase H5028_06015 PF01513 ATP-NAD kinase H5028_06020 PF07023 Protein of unknown function (DUF1315) H5028_06025 PF00591 Glycosyl transferase family, a/b domain H5028_06025 PF02885 Glycosyl transferase family, helical bundle domain H5028_06030 PF00375 Sodium:dicarboxylate symporter family H5028_06035 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_06035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_06035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_06040 PF00756 Putative esterase H5028_06045 PF00800 Prephenate dehydratase H5028_06045 PF01817 Chorismate mutase type II H5028_06045 PF01842 ACT domain H5028_06050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H5028_06060 PF07687 Peptidase dimerisation domain H5028_06060 PF01546 Peptidase family M20/M25/M40 H5028_06065 PF12706 Beta-lactamase superfamily domain H5028_06075 PF03883 Peroxide stress protein YaaA H5028_06085 PF05690 Thiazole biosynthesis protein ThiG H5028_06095 PF04241 Protein of unknown function (DUF423) H5028_06100 PF04542 Sigma-70 region 2 H5028_06100 PF00140 Sigma-70 factor, region 1.2 H5028_06100 PF04545 Sigma-70, region 4 H5028_06110 PF00313 'Cold-shock' DNA-binding domain H5028_06115 PF00270 DEAD/DEAH box helicase H5028_06115 PF00271 Helicase conserved C-terminal domain H5028_06125 PF00881 Nitroreductase family H5028_06130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus H5028_06130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus H5028_06150 PF01180 Dihydroorotate dehydrogenase H5028_06155 PF02674 Colicin V production protein H5028_06160 PF00156 Phosphoribosyl transferase domain H5028_06175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5028_06175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5028_06180 PF01435 Peptidase family M48 H5028_06185 PF09424 Yqey-like protein H5028_06190 PF01165 Ribosomal protein S21 H5028_06195 PF00814 Glycoprotease family H5028_06215 PF00069 Protein kinase domain H5028_06240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_06240 PF03466 LysR substrate binding domain H5028_06245 PF00202 Aminotransferase class-III H5028_06250 PF00171 Aldehyde dehydrogenase family H5028_06255 PF00324 Amino acid permease H5028_06285 PF04076 Bacterial OB fold (BOF) protein H5028_06310 PF00561 alpha/beta hydrolase fold H5028_06315 PF03616 Sodium/glutamate symporter H5028_06325 PF07729 FCD domain H5028_06325 PF00392 Bacterial regulatory proteins, gntR family H5028_06375 PF00083 Sugar (and other) transporter H5028_06375 PF08946 Osmosensory transporter coiled coil H5028_06395 PF00155 Aminotransferase class I and II H5028_06400 PF06826 Predicted Permease Membrane Region H5028_06400 PF02080 TrkA-C domain H5028_06410 PF04403 Paraquat-inducible protein A H5028_06415 PF02470 MlaD protein H5028_06425 PF01177 Asp/Glu/Hydantoin racemase H5028_06430 PF13610 DDE domain H5028_06440 PF07995 Glucose / Sorbosone dehydrogenase H5028_06445 PF00892 EamA-like transporter family H5028_06450 PF13610 DDE domain H5028_06460 PF01636 Phosphotransferase enzyme family H5028_06465 PF13610 DDE domain H5028_06480 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_06485 PF01909 Nucleotidyltransferase domain H5028_06485 PF13427 Domain of unknown function (DUF4111) H5028_06490 PF00893 Small Multidrug Resistance protein H5028_06495 PF00809 Pterin binding enzyme H5028_06510 PF07091 Ribosomal RNA methyltransferase (FmrO) H5028_06530 PF00005 ABC transporter H5028_06530 PF12848 ABC transporter H5028_06535 PF01636 Phosphotransferase enzyme family H5028_06545 PF13007 Transposase C of IS166 homeodomain H5028_06545 PF03050 Transposase IS66 family H5028_06545 PF13817 IS66 C-terminal element H5028_06545 PF13005 zinc-finger binding domain of transposase IS66 H5028_06565 PF01051 Initiator Replication protein H5028_06570 PF13610 DDE domain H5028_06585 PF00375 Sodium:dicarboxylate symporter family H5028_06595 PF00753 Metallo-beta-lactamase superfamily H5028_06595 PF16123 Hydroxyacylglutathione hydrolase C-terminus H5028_06600 PF00528 Binding-protein-dependent transport system inner membrane component H5028_06605 PF09383 NIL domain H5028_06605 PF00005 ABC transporter H5028_06610 PF03180 NLPA lipoprotein H5028_06615 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain H5028_06615 PF02844 Phosphoribosylglycinamide synthetase, N domain H5028_06615 PF02843 Phosphoribosylglycinamide synthetase, C domain H5028_06620 PF01808 AICARFT/IMPCHase bienzyme H5028_06620 PF02142 MGS-like domain H5028_06625 PF02954 Bacterial regulatory protein, Fis family H5028_06645 PF13932 GidA associated domain H5028_06645 PF01134 Glucose inhibited division protein A H5028_06655 PF14403 Circularly permuted ATP-grasp type 2 H5028_06665 PF08379 Bacterial transglutaminase-like N-terminal region H5028_06665 PF01841 Transglutaminase-like superfamily H5028_06675 PF01168 Alanine racemase, N-terminal domain H5028_06675 PF00842 Alanine racemase, C-terminal domain H5028_06680 PF03796 DnaB-like helicase C terminal domain H5028_06680 PF00772 DnaB-like helicase N terminal domain H5028_06685 PF01281 Ribosomal protein L9, N-terminal domain H5028_06685 PF03948 Ribosomal protein L9, C-terminal domain H5028_06690 PF01084 Ribosomal protein S18 H5028_06695 PF01250 Ribosomal protein S6 H5028_06700 PF01040 UbiA prenyltransferase family H5028_06705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV H5028_06710 PF00510 Cytochrome c oxidase subunit III H5028_06715 PF00115 Cytochrome C and Quinol oxidase polypeptide I H5028_06720 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H5028_06720 PF06481 COX Aromatic Rich Motif H5028_06730 PF00391 PEP-utilising enzyme, mobile domain H5028_06730 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain H5028_06730 PF02896 PEP-utilising enzyme, TIM barrel domain H5028_06735 PF03618 Kinase/pyrophosphorylase H5028_06745 PF14883 Hypothetical glycosyl hydrolase family 13 H5028_06745 PF01522 Polysaccharide deacetylase H5028_06750 PF00535 Glycosyl transferase family 2 H5028_06755 PF13994 PgaD-like protein H5028_06765 PF00296 Luciferase-like monooxygenase H5028_06780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_06780 PF03466 LysR substrate binding domain H5028_06790 PF03462 PCRF domain H5028_06790 PF00472 RF-1 domain H5028_06795 PF17827 PrmC N-terminal domain H5028_06795 PF13847 Methyltransferase domain H5028_06800 PF00528 Binding-protein-dependent transport system inner membrane component H5028_06805 PF09084 NMT1/THI5 like H5028_06810 PF12833 Helix-turn-helix domain H5028_06815 PF00106 short chain dehydrogenase H5028_06820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_06820 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_06820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_06825 PF13193 AMP-binding enzyme C-terminal domain H5028_06825 PF00501 AMP-binding enzyme H5028_06830 PF01613 Flavin reductase like domain H5028_06835 PF00899 ThiF family H5028_06840 PF03109 ABC1 family H5028_06855 PF03814 Potassium-transporting ATPase A subunit H5028_06865 PF02669 K+-transporting ATPase, c chain H5028_06870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_06870 PF02702 Osmosensitive K+ channel His kinase sensor domain H5028_06870 PF13493 Domain of unknown function (DUF4118) H5028_06870 PF00512 His Kinase A (phospho-acceptor) domain H5028_06875 PF00072 Response regulator receiver domain H5028_06875 PF00486 Transcriptional regulatory protein, C terminal H5028_06880 PF00120 Glutamine synthetase, catalytic domain H5028_06890 PF03232 Ubiquinone biosynthesis protein COQ7 H5028_06895 PF07690 Major Facilitator Superfamily H5028_06900 PF01103 Surface antigen H5028_06900 PF17243 POTRA domain TamA domain 1 H5028_06900 PF07244 Surface antigen variable number repeat H5028_06915 PF06434 Aconitate hydratase 2 N-terminus H5028_06915 PF11791 Aconitate B N-terminal domain H5028_06915 PF00330 Aconitase family (aconitate hydratase) H5028_06925 PF00027 Cyclic nucleotide-binding domain H5028_06925 PF00520 Ion transport protein H5028_06930 PF07690 Major Facilitator Superfamily H5028_06945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_06945 PF03466 LysR substrate binding domain H5028_06950 PF04284 Protein of unknown function (DUF441) H5028_06960 PF00849 RNA pseudouridylate synthase H5028_06960 PF01479 S4 domain H5028_06975 PF00849 RNA pseudouridylate synthase H5028_06975 PF01479 S4 domain H5028_06980 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE H5028_06985 PF01119 DNA mismatch repair protein, C-terminal domain H5028_06985 PF08676 MutL C terminal dimerisation domain H5028_06995 PF17209 Hfq protein H5028_07005 PF00881 Nitroreductase family H5028_07015 PF00149 Calcineurin-like phosphoesterase H5028_07020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H5028_07025 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain H5028_07025 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5028_07030 PF02540 NAD synthase H5028_07030 PF00117 Glutamine amidotransferase class-I H5028_07030 PF00958 GMP synthase C terminal domain H5028_07035 PF05985 Ethanolamine ammonia-lyase light chain (EutC) H5028_07040 PF06751 Ethanolamine ammonia lyase large subunit (EutB) H5028_07045 PF13520 Amino acid permease H5028_07050 PF00171 Aldehyde dehydrogenase family H5028_07065 PF00465 Iron-containing alcohol dehydrogenase H5028_07070 PF05970 PIF1-like helicase H5028_07070 PF14493 Helix-turn-helix domain H5028_07080 PF06445 GyrI-like small molecule binding domain H5028_07085 PF02110 Hydroxyethylthiazole kinase family H5028_07100 PF01433 Peptidase family M1 domain H5028_07100 PF17432 Domain of unknown function (DUF3458_C) ARM repeats H5028_07100 PF11940 Domain of unknown function (DUF3458) Ig-like fold H5028_07130 PF01817 Chorismate mutase type II H5028_07135 PF01037 Lrp/AsnC ligand binding domain H5028_07145 PF00440 Bacterial regulatory proteins, tetR family H5028_07150 PF00593 TonB dependent receptor H5028_07150 PF07715 TonB-dependent Receptor Plug Domain H5028_07155 PF00924 Mechanosensitive ion channel H5028_07195 PF00593 TonB dependent receptor H5028_07195 PF07715 TonB-dependent Receptor Plug Domain H5028_07215 PF00005 ABC transporter H5028_07215 PF12848 ABC transporter H5028_07220 PF00582 Universal stress protein family H5028_07245 PF00689 Cation transporting ATPase, C-terminus H5028_07245 PF00690 Cation transporter/ATPase, N-terminus H5028_07250 PF02308 MgtC family H5028_07255 PF03594 Benzoate membrane transport protein H5028_07260 PF01037 Lrp/AsnC ligand binding domain H5028_07265 PF01810 LysE type translocator H5028_07270 PF00923 Transaldolase/Fructose-6-phosphate aldolase H5028_07275 PF03466 LysR substrate binding domain H5028_07275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_07285 PF00108 Thiolase, N-terminal domain H5028_07285 PF02803 Thiolase, C-terminal domain H5028_07295 PF01575 MaoC like domain H5028_07300 PF00144 Beta-lactamase H5028_07310 PF07690 Major Facilitator Superfamily H5028_07315 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding H5028_07315 PF12170 DNA polymerase III tau subunit V interacting with alpha H5028_07315 PF12169 DNA polymerase III subunits gamma and tau domain III H5028_07320 PF05506 Domain of unknown function (DUF756) H5028_07320 PF04185 Phosphoesterase family H5028_07325 PF03061 Thioesterase superfamily H5028_07330 PF00465 Iron-containing alcohol dehydrogenase H5028_07340 PF01451 Low molecular weight phosphotyrosine protein phosphatase H5028_07345 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain H5028_07345 PF01565 FAD binding domain H5028_07360 PF01645 Conserved region in glutamate synthase H5028_07380 PF12832 MFS_1 like family H5028_07390 PF02785 Biotin carboxylase C-terminal domain H5028_07390 PF00289 Biotin carboxylase, N-terminal domain H5028_07390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5028_07395 PF00364 Biotin-requiring enzyme H5028_07400 PF01220 Dehydroquinase class II H5028_07405 PF13438 Domain of unknown function (DUF4113) H5028_07405 PF11799 impB/mucB/samB family C-terminal domain H5028_07405 PF00817 impB/mucB/samB family H5028_07415 PF00005 ABC transporter H5028_07420 PF00486 Transcriptional regulatory protein, C terminal H5028_07420 PF00072 Response regulator receiver domain H5028_07430 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_07430 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5028_07430 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5028_07430 PF18267 Rubredoxin NAD+ reductase C-terminal domain H5028_07430 PF04324 BFD-like [2Fe-2S] binding domain H5028_07430 PF13806 Rieske-like [2Fe-2S] domain H5028_07435 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_07435 PF04324 BFD-like [2Fe-2S] binding domain H5028_07435 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5028_07435 PF18267 Rubredoxin NAD+ reductase C-terminal domain H5028_07435 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5028_07440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5028_07440 PF01568 Molydopterin dinucleotide binding domain H5028_07440 PF00384 Molybdopterin oxidoreductase H5028_07440 PF04324 BFD-like [2Fe-2S] binding domain H5028_07445 PF12804 MobA-like NTP transferase domain H5028_07450 PF01568 Molydopterin dinucleotide binding domain H5028_07450 PF00384 Molybdopterin oxidoreductase H5028_07450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5028_07455 PF06463 Molybdenum Cofactor Synthesis C H5028_07455 PF04055 Radical SAM superfamily H5028_07465 PF02391 MoaE protein H5028_07470 PF01967 MoaC family H5028_07470 PF00994 Probable molybdopterin binding domain H5028_07475 PF03453 MoeA N-terminal region (domain I and II) H5028_07475 PF03454 MoeA C-terminal region (domain IV) H5028_07475 PF00994 Probable molybdopterin binding domain H5028_07480 PF01638 HxlR-like helix-turn-helix H5028_07485 PF00392 Bacterial regulatory proteins, gntR family H5028_07485 PF00155 Aminotransferase class I and II H5028_07490 PF00892 EamA-like transporter family H5028_07510 PF02635 DsrE/DsrF-like family H5028_07515 PF16363 GDP-mannose 4,6 dehydratase H5028_07520 PF10415 Fumarase C C-terminus H5028_07520 PF00206 Lyase H5028_07540 PF01266 FAD dependent oxidoreductase H5028_07550 PF02542 YgbB family H5028_07560 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H5028_07560 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H5028_07565 PF00440 Bacterial regulatory proteins, tetR family H5028_07570 PF02954 Bacterial regulatory protein, Fis family H5028_07570 PF00158 Sigma-54 interaction domain H5028_07570 PF00072 Response regulator receiver domain H5028_07575 PF00512 His Kinase A (phospho-acceptor) domain H5028_07575 PF00989 PAS fold H5028_07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_07580 PF00919 Uncharacterized protein family UPF0004 H5028_07580 PF18693 TRAM domain H5028_07580 PF04055 Radical SAM superfamily H5028_07585 PF00696 Amino acid kinase family H5028_07590 PF01765 Ribosome recycling factor H5028_07595 PF01255 Putative undecaprenyl diphosphate synthase H5028_07605 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain H5028_07605 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase H5028_07605 PF13288 DXP reductoisomerase C-terminal domain H5028_07610 PF17820 PDZ domain H5028_07610 PF13180 PDZ domain H5028_07610 PF02163 Peptidase family M50 H5028_07615 PF07244 Surface antigen variable number repeat H5028_07615 PF01103 Surface antigen H5028_07625 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_07625 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD H5028_07630 PF07977 FabA-like domain H5028_07635 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 H5028_07635 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_07650 PF02631 RecX family H5028_07655 PF00154 recA bacterial DNA recombination protein H5028_07660 PF01479 S4 domain H5028_07665 PF13419 Haloacid dehalogenase-like hydrolase H5028_07690 PF01037 Lrp/AsnC ligand binding domain H5028_07695 PF00266 Aminotransferase class-V H5028_07700 PF00324 Amino acid permease H5028_07710 PF00082 Subtilase family H5028_07710 PF05922 Peptidase inhibitor I9 H5028_07715 PF00916 Sulfate permease family H5028_07715 PF01740 STAS domain H5028_07720 PF02586 SOS response associated peptidase (SRAP) H5028_07725 PF07995 Glucose / Sorbosone dehydrogenase H5028_07735 PF00990 Diguanylate cyclase, GGDEF domain H5028_07735 PF00563 EAL domain H5028_07735 PF03707 Bacterial signalling protein N terminal repeat H5028_07755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5028_07755 PF02378 Phosphotransferase system, EIIC H5028_07760 PF00294 pfkB family carbohydrate kinase H5028_07765 PF00381 PTS HPr component phosphorylation site H5028_07765 PF00391 PEP-utilising enzyme, mobile domain H5028_07765 PF02896 PEP-utilising enzyme, TIM barrel domain H5028_07765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5028_07765 PF05524 PEP-utilising enzyme, N-terminal H5028_07790 PF05525 Branched-chain amino acid transport protein H5028_07795 PF00557 Metallopeptidase family M24 H5028_07800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_07800 PF03466 LysR substrate binding domain H5028_07810 PF00462 Glutaredoxin H5028_07815 PF00202 Aminotransferase class-III H5028_07820 PF00571 CBS domain H5028_07820 PF00478 IMP dehydrogenase / GMP reductase domain H5028_07845 PF00448 SRP54-type protein, GTPase domain H5028_07845 PF02881 SRP54-type protein, helical bundle domain H5028_07855 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H5028_07870 PF08173 Membrane bound YbgT-like protein H5028_07875 PF02322 Cytochrome bd terminal oxidase subunit II H5028_07880 PF01654 Cytochrome bd terminal oxidase subunit I H5028_07895 PF07290 Protein of unknown function (DUF1449) H5028_07905 PF00294 pfkB family carbohydrate kinase H5028_07910 PF00593 TonB dependent receptor H5028_07910 PF07715 TonB-dependent Receptor Plug Domain H5028_07915 PF05193 Peptidase M16 inactive domain H5028_07915 PF00675 Insulinase (Peptidase family M16) H5028_07915 PF08367 Peptidase M16C associated H5028_07920 PF02253 Phospholipase A1 H5028_07925 PF02386 Cation transport protein H5028_07930 PF02080 TrkA-C domain H5028_07930 PF02254 TrkA-N domain H5028_07935 PF00585 C-terminal regulatory domain of Threonine dehydratase H5028_07935 PF00291 Pyridoxal-phosphate dependent enzyme H5028_07940 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) H5028_07955 PF01118 Semialdehyde dehydrogenase, NAD binding domain H5028_07955 PF02774 Semialdehyde dehydrogenase, dimerisation domain H5028_07965 PF02617 ATP-dependent Clp protease adaptor protein ClpS H5028_07970 PF00004 ATPase family associated with various cellular activities (AAA) H5028_07970 PF07724 AAA domain (Cdc48 subfamily) H5028_07970 PF17871 AAA lid domain H5028_07970 PF02861 Clp amino terminal domain, pathogenicity island component H5028_07970 PF10431 C-terminal, D2-small domain, of ClpB protein H5028_07975 PF02694 Uncharacterised BCR, YnfA/UPF0060 family H5028_07980 PF00793 DAHP synthetase I family H5028_07995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5028_07995 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_08025 PF06418 CTP synthase N-terminus H5028_08025 PF00117 Glutamine amidotransferase class-I H5028_08030 PF00793 DAHP synthetase I family H5028_08035 PF03952 Enolase, N-terminal domain H5028_08035 PF00113 Enolase, C-terminal TIM barrel domain H5028_08040 PF04239 Protein of unknown function (DUF421) H5028_08045 PF04977 Septum formation initiator H5028_08050 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H5028_08055 PF01144 Coenzyme A transferase H5028_08060 PF01144 Coenzyme A transferase H5028_08065 PF00108 Thiolase, N-terminal domain H5028_08065 PF02803 Thiolase, C-terminal domain H5028_08070 PF10397 Adenylosuccinate lyase C-terminus H5028_08070 PF00206 Lyase H5028_08075 PF00561 alpha/beta hydrolase fold H5028_08080 PF07690 Major Facilitator Superfamily H5028_08085 PF02627 Carboxymuconolactone decarboxylase family H5028_08090 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal H5028_08090 PF00775 Dioxygenase H5028_08095 PF00775 Dioxygenase H5028_08100 PF01487 Type I 3-dehydroquinase H5028_08105 PF05048 Periplasmic copper-binding protein (NosD) H5028_08110 PF04966 Carbohydrate-selective porin, OprB family H5028_08115 PF01011 PQQ enzyme repeat H5028_08115 PF13360 PQQ-like domain H5028_08125 PF04143 Sulphur transport H5028_08135 PF00753 Metallo-beta-lactamase superfamily H5028_08140 PF09339 IclR helix-turn-helix domain H5028_08140 PF01614 Bacterial transcriptional regulator H5028_08145 PF03466 LysR substrate binding domain H5028_08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_08150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_08150 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_08150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_08165 PF00106 short chain dehydrogenase H5028_08175 PF07690 Major Facilitator Superfamily H5028_08185 PF01425 Amidase H5028_08190 PF08028 Acyl-CoA dehydrogenase, C-terminal domain H5028_08205 PF00355 Rieske [2Fe-2S] domain H5028_08205 PF00848 Ring hydroxylating alpha subunit (catalytic domain) H5028_08220 PF00111 2Fe-2S iron-sulfur cluster binding domain H5028_08220 PF00175 Oxidoreductase NAD-binding domain H5028_08225 PF01613 Flavin reductase like domain H5028_08230 PF02311 AraC-like ligand binding domain H5028_08230 PF12833 Helix-turn-helix domain H5028_08235 PF02728 Copper amine oxidase, N3 domain H5028_08235 PF01179 Copper amine oxidase, enzyme domain H5028_08235 PF07833 Copper amine oxidase N-terminal domain H5028_08235 PF02727 Copper amine oxidase, N2 domain H5028_08245 PF00171 Aldehyde dehydrogenase family H5028_08250 PF01804 Penicillin amidase H5028_08255 PF12146 Serine aminopeptidase, S33 H5028_08260 PF00108 Thiolase, N-terminal domain H5028_08260 PF02803 Thiolase, C-terminal domain H5028_08265 PF01144 Coenzyme A transferase H5028_08270 PF01144 Coenzyme A transferase H5028_08275 PF04444 Catechol dioxygenase N terminus H5028_08275 PF00775 Dioxygenase H5028_08280 PF02426 Muconolactone delta-isomerase H5028_08285 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H5028_08285 PF13378 Enolase C-terminal domain-like H5028_08290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_08290 PF03466 LysR substrate binding domain H5028_08300 PF07729 FCD domain H5028_08300 PF00392 Bacterial regulatory proteins, gntR family H5028_08305 PF00920 Dehydratase family H5028_08310 PF07690 Major Facilitator Superfamily H5028_08320 PF00171 Aldehyde dehydrogenase family H5028_08340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_08340 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_08340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_08350 PF06506 Propionate catabolism activator H5028_08350 PF00158 Sigma-54 interaction domain H5028_08350 PF02954 Bacterial regulatory protein, Fis family H5028_08355 PF13193 AMP-binding enzyme C-terminal domain H5028_08355 PF00501 AMP-binding enzyme H5028_08360 PF04341 Protein of unknown function, DUF485 H5028_08365 PF00474 Sodium:solute symporter family H5028_08370 PF00107 Zinc-binding dehydrogenase H5028_08370 PF08240 Alcohol dehydrogenase GroES-like domain H5028_08375 PF00171 Aldehyde dehydrogenase family H5028_08385 PF00561 alpha/beta hydrolase fold H5028_08390 PF00199 Catalase H5028_08390 PF06628 Catalase-related immune-responsive H5028_08405 PF07859 alpha/beta hydrolase fold H5028_08410 PF01047 MarR family H5028_08415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5028_08415 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_08420 PF00106 short chain dehydrogenase H5028_08425 PF01872 RibD C-terminal domain H5028_08430 PF09278 MerR, DNA binding H5028_08430 PF00376 MerR family regulatory protein H5028_08440 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_08450 PF12706 Beta-lactamase superfamily domain H5028_08455 PF00440 Bacterial regulatory proteins, tetR family H5028_08455 PF08359 YsiA-like protein, C-terminal region H5028_08465 PF00857 Isochorismatase family H5028_08470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_08470 PF03466 LysR substrate binding domain H5028_08475 PF07995 Glucose / Sorbosone dehydrogenase H5028_08480 PF02254 TrkA-N domain H5028_08480 PF00999 Sodium/hydrogen exchanger family H5028_08490 PF07687 Peptidase dimerisation domain H5028_08490 PF01546 Peptidase family M20/M25/M40 H5028_08500 PF17287 POTRA domain H5028_08500 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB H5028_08500 PF08479 POTRA domain, ShlB-type H5028_08505 PF13332 Hemagglutinin repeat H5028_08505 PF13018 Extended Signal Peptide of Type V secretion system H5028_08505 PF04829 Pre-toxin domain with VENN motif H5028_08505 PF05860 haemagglutination activity domain H5028_08520 PF07690 Major Facilitator Superfamily H5028_08525 PF04909 Amidohydrolase H5028_08535 PF07702 UTRA domain H5028_08535 PF00392 Bacterial regulatory proteins, gntR family H5028_08540 PF08450 SMP-30/Gluconolactonase/LRE-like region H5028_08550 PF03466 LysR substrate binding domain H5028_08550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_08570 PF07690 Major Facilitator Superfamily H5028_08575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5028_08575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5028_08575 PF01842 ACT domain H5028_08580 PF03737 Aldolase/RraA H5028_08600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5028_08600 PF00529 HlyD membrane-fusion protein of T1SS H5028_08615 PF00171 Aldehyde dehydrogenase family H5028_08620 PF00920 Dehydratase family H5028_08630 PF03466 LysR substrate binding domain H5028_08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_08635 PF01370 NAD dependent epimerase/dehydratase family H5028_08640 PF07690 Major Facilitator Superfamily H5028_08645 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5028_08645 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5028_08650 PF12833 Helix-turn-helix domain H5028_08650 PF06719 AraC-type transcriptional regulator N-terminus H5028_08665 PF08240 Alcohol dehydrogenase GroES-like domain H5028_08665 PF00107 Zinc-binding dehydrogenase H5028_08675 PF01032 FecCD transport family H5028_08680 PF00005 ABC transporter H5028_08700 PF14572 Phosphoribosyl synthetase-associated domain H5028_08700 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase H5028_08705 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family H5028_08775 PF00196 Bacterial regulatory proteins, luxR family H5028_08780 PF01425 Amidase H5028_08785 PF13533 Biotin-lipoyl like H5028_08790 PF07690 Major Facilitator Superfamily H5028_08815 PF01975 Survival protein SurE H5028_08825 PF02824 TGS domain H5028_08825 PF13291 ACT domain H5028_08825 PF04607 Region found in RelA / SpoT proteins H5028_08875 PF12146 Serine aminopeptidase, S33 H5028_08880 PF12833 Helix-turn-helix domain H5028_08880 PF02311 AraC-like ligand binding domain H5028_08890 PF00672 HAMP domain H5028_08890 PF00512 His Kinase A (phospho-acceptor) domain H5028_08890 PF16527 Two-component sensor protein CpxA, periplasmic domain H5028_08890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_08895 PF00486 Transcriptional regulatory protein, C terminal H5028_08895 PF00072 Response regulator receiver domain H5028_08900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5028_08900 PF00529 HlyD membrane-fusion protein of T1SS H5028_08905 PF00873 AcrB/AcrD/AcrF family H5028_08910 PF02321 Outer membrane efflux protein H5028_08915 PF12146 Serine aminopeptidase, S33 H5028_08920 PF00743 Flavin-binding monooxygenase-like H5028_08925 PF01593 Flavin containing amine oxidoreductase H5028_08940 PF01266 FAD dependent oxidoreductase H5028_08960 PF16970 Type-1 fimbrial protein, A H5028_08970 PF02753 Pili assembly chaperone PapD, C-terminal domain H5028_08970 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain H5028_08975 PF00577 Outer membrane usher protein H5028_08975 PF13954 PapC N-terminal domain H5028_08975 PF13953 PapC C-terminal domain H5028_08980 PF00419 Fimbrial protein H5028_08990 PF00107 Zinc-binding dehydrogenase H5028_08990 PF08240 Alcohol dehydrogenase GroES-like domain H5028_09000 PF00199 Catalase H5028_09015 PF13091 PLD-like domain H5028_09035 PF01244 Membrane dipeptidase (Peptidase family M19) H5028_09040 PF04055 Radical SAM superfamily H5028_09040 PF13186 Iron-sulfur cluster-binding domain H5028_09045 PF05402 Coenzyme PQQ synthesis protein D (PqqD) H5028_09050 PF03070 TENA/THI-4/PQQC family H5028_09055 PF12706 Beta-lactamase superfamily domain H5028_09060 PF08042 PqqA family H5028_09065 PF13089 Polyphosphate kinase N-terminal domain H5028_09065 PF02503 Polyphosphate kinase middle domain H5028_09065 PF17941 Polyphosphate kinase C-terminal domain 1 H5028_09065 PF13090 Polyphosphate kinase C-terminal domain 2 H5028_09070 PF00149 Calcineurin-like phosphoesterase H5028_09080 PF00857 Isochorismatase family H5028_09080 PF00550 Phosphopantetheine attachment site H5028_09085 PF00106 short chain dehydrogenase H5028_09090 PF03459 TOBE domain H5028_09090 PF00005 ABC transporter H5028_09095 PF00528 Binding-protein-dependent transport system inner membrane component H5028_09105 PF03459 TOBE domain H5028_09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_09110 PF00848 Ring hydroxylating alpha subunit (catalytic domain) H5028_09110 PF00355 Rieske [2Fe-2S] domain H5028_09115 PF00866 Ring hydroxylating beta subunit H5028_09120 PF00111 2Fe-2S iron-sulfur cluster binding domain H5028_09120 PF00970 Oxidoreductase FAD-binding domain H5028_09120 PF00175 Oxidoreductase NAD-binding domain H5028_09125 PF12833 Helix-turn-helix domain H5028_09125 PF14525 AraC-binding-like domain H5028_09135 PF01613 Flavin reductase like domain H5028_09150 PF01738 Dienelactone hydrolase family H5028_09160 PF12833 Helix-turn-helix domain H5028_09160 PF06719 AraC-type transcriptional regulator N-terminus H5028_09185 PF03466 LysR substrate binding domain H5028_09185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_09195 PF01144 Coenzyme A transferase H5028_09200 PF01144 Coenzyme A transferase H5028_09205 PF02667 Short chain fatty acid transporter H5028_09215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_09215 PF03466 LysR substrate binding domain H5028_09220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_09220 PF03466 LysR substrate binding domain H5028_09260 PF00005 ABC transporter H5028_09265 PF00528 Binding-protein-dependent transport system inner membrane component H5028_09285 PF00392 Bacterial regulatory proteins, gntR family H5028_09285 PF07702 UTRA domain H5028_09295 PF02525 Flavodoxin-like fold H5028_09300 PF01638 HxlR-like helix-turn-helix H5028_09305 PF06445 GyrI-like small molecule binding domain H5028_09305 PF12833 Helix-turn-helix domain H5028_09320 PF01925 Sulfite exporter TauE/SafE H5028_09325 PF04273 Putative phosphatase (DUF442) H5028_09325 PF00753 Metallo-beta-lactamase superfamily H5028_09330 PF00753 Metallo-beta-lactamase superfamily H5028_09330 PF04273 Putative phosphatase (DUF442) H5028_09335 PF00158 Sigma-54 interaction domain H5028_09335 PF02954 Bacterial regulatory protein, Fis family H5028_09335 PF00072 Response regulator receiver domain H5028_09340 PF01062 Bestrophin, RFP-TM, chloride channel H5028_09345 PF00107 Zinc-binding dehydrogenase H5028_09345 PF08240 Alcohol dehydrogenase GroES-like domain H5028_09350 PF00106 short chain dehydrogenase H5028_09355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5028_09355 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_09360 PF02817 e3 binding domain H5028_09360 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5028_09360 PF00364 Biotin-requiring enzyme H5028_09365 PF02780 Transketolase, C-terminal domain H5028_09365 PF02779 Transketolase, pyrimidine binding domain H5028_09370 PF00676 Dehydrogenase E1 component H5028_09375 PF04055 Radical SAM superfamily H5028_09390 PF08448 PAS fold H5028_09390 PF00990 Diguanylate cyclase, GGDEF domain H5028_09395 PF01264 Chorismate synthase H5028_09400 PF05175 Methyltransferase small domain H5028_09405 PF00291 Pyridoxal-phosphate dependent enzyme H5028_09415 PF01434 Peptidase family M41 H5028_09415 PF00004 ATPase family associated with various cellular activities (AAA) H5028_09415 PF17862 AAA+ lid domain H5028_09425 PF05166 YcgL domain H5028_09445 PF01612 3'-5' exonuclease H5028_09445 PF00570 HRDC domain H5028_09450 PF13662 Toprim domain H5028_09450 PF02132 RecR protein H5028_09455 PF02575 YbaB/EbfC DNA-binding family H5028_09465 PF01053 Cys/Met metabolism PLP-dependent enzyme H5028_09470 PF00561 alpha/beta hydrolase fold H5028_09475 PF08241 Methyltransferase domain H5028_09505 PF01230 HIT domain H5028_09540 PF00005 ABC transporter H5028_09545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5028_09555 PF02684 Lipid-A-disaccharide synthetase H5028_09560 PF00593 TonB dependent receptor H5028_09560 PF07715 TonB-dependent Receptor Plug Domain H5028_09580 PF01925 Sulfite exporter TauE/SafE H5028_09585 PF00793 DAHP synthetase I family H5028_09590 PF02654 Cobalamin-5-phosphate synthase H5028_09605 PF02277 Phosphoribosyltransferase H5028_09610 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase H5028_09620 PF13419 Haloacid dehalogenase-like hydrolase H5028_09645 PF00593 TonB dependent receptor H5028_09645 PF07715 TonB-dependent Receptor Plug Domain H5028_09660 PF04183 IucA / IucC family H5028_09660 PF06276 Ferric iron reductase FhuF-like transporter H5028_09665 PF06276 Ferric iron reductase FhuF-like transporter H5028_09665 PF04183 IucA / IucC family H5028_09670 PF07690 Major Facilitator Superfamily H5028_09675 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) H5028_09680 PF06276 Ferric iron reductase FhuF-like transporter H5028_09680 PF04183 IucA / IucC family H5028_09685 PF04073 Aminoacyl-tRNA editing domain H5028_09695 PF03109 ABC1 family H5028_09700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_09700 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_09700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_09705 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_09705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_09705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_09710 PF00487 Fatty acid desaturase H5028_09715 PF12852 Cupin H5028_09715 PF12833 Helix-turn-helix domain H5028_09720 PF09312 SurA N-terminal domain H5028_09720 PF00639 PPIC-type PPIASE domain H5028_09725 PF00216 Bacterial DNA-binding protein H5028_09740 PF02082 Transcriptional regulator H5028_09745 PF00266 Aminotransferase class-V H5028_09750 PF01592 NifU-like N terminal domain H5028_09755 PF01521 Iron-sulphur cluster biosynthesis H5028_09760 PF00226 DnaJ domain H5028_09760 PF07743 HSCB C-terminal oligomerisation domain H5028_09765 PF00012 Hsp70 protein H5028_09770 PF00111 2Fe-2S iron-sulfur cluster binding domain H5028_09775 PF00211 Adenylate and Guanylate cyclase catalytic domain H5028_09785 PF02559 CarD-like/TRCF domain H5028_09785 PF00270 DEAD/DEAH box helicase H5028_09785 PF00271 Helicase conserved C-terminal domain H5028_09785 PF03461 TRCF domain H5028_09785 PF17757 UvrB interaction domain H5028_09805 PF03737 Aldolase/RraA H5028_09810 PF13460 NAD(P)H-binding H5028_09815 PF01649 Ribosomal protein S20 H5028_09825 PF00459 Inositol monophosphatase family H5028_09840 PF00005 ABC transporter H5028_09840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5028_09845 PF00528 Binding-protein-dependent transport system inner membrane component H5028_09850 PF00528 Binding-protein-dependent transport system inner membrane component H5028_09855 PF01432 Peptidase family M3 H5028_09875 PF00593 TonB dependent receptor H5028_09875 PF07715 TonB-dependent Receptor Plug Domain H5028_09885 PF01618 MotA/TolQ/ExbB proton channel family H5028_09890 PF02472 Biopolymer transport protein ExbD/TolR H5028_09895 PF02472 Biopolymer transport protein ExbD/TolR H5028_09905 PF01274 Malate synthase H5028_09910 PF03969 AFG1-like ATPase H5028_09920 PF00743 Flavin-binding monooxygenase-like H5028_09930 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family H5028_09940 PF00216 Bacterial DNA-binding protein H5028_09945 PF00575 S1 RNA binding domain H5028_09950 PF02224 Cytidylate kinase H5028_09960 PF14437 MafB19-like deaminase H5028_09970 PF03167 Uracil DNA glycosylase superfamily H5028_09980 PF03934 Type II secretion system (T2SS), protein K H5028_09985 PF07963 Prokaryotic N-terminal methylation motif H5028_09985 PF11612 Type II secretion system (T2SS), protein J H5028_09990 PF07963 Prokaryotic N-terminal methylation motif H5028_09990 PF02501 Type II secretion system (T2SS), protein I H5028_10005 PF01026 TatD related DNase H5028_10015 PF09115 DNA polymerase III, delta subunit, C terminal H5028_10020 PF02348 Cytidylyltransferase H5028_10025 PF02606 Tetraacyldisaccharide-1-P 4'-kinase H5028_10030 PF00664 ABC transporter transmembrane region H5028_10030 PF00005 ABC transporter H5028_10040 PF01618 MotA/TolQ/ExbB proton channel family H5028_10045 PF02195 ParB-like nuclease domain H5028_10045 PF17762 HTH domain found in ParB protein H5028_10050 PF13614 AAA domain H5028_10055 PF02527 rRNA small subunit methyltransferase G H5028_10060 PF00483 Nucleotidyl transferase H5028_10065 PF01636 Phosphotransferase enzyme family H5028_10070 PF03968 OstA-like protein H5028_10070 PF04453 LPS transport system D H5028_10075 PF00639 PPIC-type PPIASE domain H5028_10075 PF09312 SurA N-terminal domain H5028_10080 PF01116 Fructose-bisphosphate aldolase class-II H5028_10090 PF00162 Phosphoglycerate kinase H5028_10100 PF02545 Maf-like protein H5028_10105 PF08007 Cupin superfamily protein H5028_10125 PF00375 Sodium:dicarboxylate symporter family H5028_10130 PF06912 Protein of unknown function (DUF1275) H5028_10135 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) H5028_10140 PF00664 ABC transporter transmembrane region H5028_10140 PF00005 ABC transporter H5028_10150 PF12833 Helix-turn-helix domain H5028_10150 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H5028_10155 PF01597 Glycine cleavage H-protein H5028_10160 PF02146 Sir2 family H5028_10165 PF00474 Sodium:solute symporter family H5028_10170 PF01037 Lrp/AsnC ligand binding domain H5028_10175 PF18327 Proline utilization A proline dehydrogenase N-terminal domain H5028_10175 PF14850 DNA-binding domain of Proline dehydrogenase H5028_10175 PF01619 Proline dehydrogenase H5028_10175 PF00171 Aldehyde dehydrogenase family H5028_10180 PF04229 GrpB protein H5028_10185 PF05958 tRNA (Uracil-5-)-methyltransferase H5028_10195 PF09992 Phosphodiester glycosidase H5028_10205 PF04264 YceI-like domain H5028_10215 PF00456 Transketolase, thiamine diphosphate binding domain H5028_10215 PF02779 Transketolase, pyrimidine binding domain H5028_10215 PF02780 Transketolase, C-terminal domain H5028_10220 PF02772 S-adenosylmethionine synthetase, central domain H5028_10220 PF00438 S-adenosylmethionine synthetase, N-terminal domain H5028_10220 PF02773 S-adenosylmethionine synthetase, C-terminal domain H5028_10240 PF00905 Penicillin binding protein transpeptidase domain H5028_10255 PF02075 Crossover junction endodeoxyribonuclease RuvC H5028_10260 PF01256 Carbohydrate kinase H5028_10260 PF03853 YjeF-related protein N-terminus H5028_10265 PF08331 Domain of unknown function (DUF1730) H5028_10270 PF04055 Radical SAM superfamily H5028_10270 PF06968 Biotin and Thiamin Synthesis associated domain H5028_10285 PF16970 Type-1 fimbrial protein, A H5028_10290 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain H5028_10290 PF02753 Pili assembly chaperone PapD, C-terminal domain H5028_10295 PF13954 PapC N-terminal domain H5028_10295 PF00577 Outer membrane usher protein H5028_10295 PF13953 PapC C-terminal domain H5028_10315 PF00892 EamA-like transporter family H5028_10325 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin H5028_10335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_10335 PF03466 LysR substrate binding domain H5028_10355 PF00440 Bacterial regulatory proteins, tetR family H5028_10365 PF01709 Transcriptional regulator H5028_10370 PF01037 Lrp/AsnC ligand binding domain H5028_10380 PF00005 ABC transporter H5028_10385 PF00528 Binding-protein-dependent transport system inner membrane component H5028_10390 PF00528 Binding-protein-dependent transport system inner membrane component H5028_10405 PF08028 Acyl-CoA dehydrogenase, C-terminal domain H5028_10405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_10415 PF00296 Luciferase-like monooxygenase H5028_10420 PF03180 NLPA lipoprotein H5028_10425 PF03180 NLPA lipoprotein H5028_10430 PF00005 ABC transporter H5028_10430 PF09383 NIL domain H5028_10435 PF00528 Binding-protein-dependent transport system inner membrane component H5028_10440 PF06071 Protein of unknown function (DUF933) H5028_10440 PF01926 50S ribosome-binding GTPase H5028_10465 PF03591 AzlC protein H5028_10470 PF05437 Branched-chain amino acid transport protein (AzlD) H5028_10480 PF02222 ATP-grasp domain H5028_10485 PF01909 Nucleotidyltransferase domain H5028_10485 PF01966 HD domain H5028_10485 PF08335 GlnD PII-uridylyltransferase H5028_10490 PF00155 Aminotransferase class I and II H5028_10500 PF12852 Cupin H5028_10500 PF12833 Helix-turn-helix domain H5028_10505 PF00255 Glutathione peroxidase H5028_10510 PF01641 SelR domain H5028_10515 PF00155 Aminotransferase class I and II H5028_10520 PF00375 Sodium:dicarboxylate symporter family H5028_10525 PF17763 Glutaminase/Asparaginase C-terminal domain H5028_10525 PF00710 Asparaginase, N-terminal H5028_10530 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5028_10530 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5028_10530 PF14579 Helix-hairpin-helix motif H5028_10530 PF02811 PHP domain H5028_10530 PF01336 OB-fold nucleic acid binding domain H5028_10535 PF00588 SpoU rRNA Methylase family H5028_10540 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_10555 PF13192 Thioredoxin domain H5028_10555 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_10570 PF03466 LysR substrate binding domain H5028_10570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_10575 PF01758 Sodium Bile acid symporter family H5028_10580 PF01022 Bacterial regulatory protein, arsR family H5028_10585 PF03960 ArsC family H5028_10595 PF01979 Amidohydrolase family H5028_10595 PF13382 Adenine deaminase C-terminal domain H5028_10605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_10605 PF03466 LysR substrate binding domain H5028_10615 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin H5028_10620 PF01177 Asp/Glu/Hydantoin racemase H5028_10625 PF02668 Taurine catabolism dioxygenase TauD, TfdA family H5028_10630 PF00528 Binding-protein-dependent transport system inner membrane component H5028_10635 PF00005 ABC transporter H5028_10640 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H5028_10655 PF00083 Sugar (and other) transporter H5028_10660 PF00296 Luciferase-like monooxygenase H5028_10665 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_10665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_10665 PF08028 Acyl-CoA dehydrogenase, C-terminal domain H5028_10675 PF01654 Cytochrome bd terminal oxidase subunit I H5028_10680 PF02322 Cytochrome bd terminal oxidase subunit II H5028_10690 PF00155 Aminotransferase class I and II H5028_10690 PF00392 Bacterial regulatory proteins, gntR family H5028_10695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_10695 PF03466 LysR substrate binding domain H5028_10710 PF00698 Acyl transferase domain H5028_10715 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG H5028_10725 PF01039 Carboxyl transferase domain H5028_10730 PF06857 Malonate decarboxylase delta subunit (MdcD) H5028_10735 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase H5028_10740 PF16957 Malonate decarboxylase, alpha subunit, transporter H5028_10745 PF07690 Major Facilitator Superfamily H5028_10760 PF00155 Aminotransferase class I and II H5028_10760 PF00392 Bacterial regulatory proteins, gntR family H5028_10765 PF04172 LrgB-like family H5028_10770 PF03788 LrgA family H5028_10775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_10775 PF03466 LysR substrate binding domain H5028_10780 PF14834 Glutathione S-transferase, C-terminal domain H5028_10780 PF02798 Glutathione S-transferase, N-terminal domain H5028_10785 PF02798 Glutathione S-transferase, N-terminal domain H5028_10790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_10790 PF03466 LysR substrate binding domain H5028_10800 PF00581 Rhodanese-like domain H5028_10805 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_10815 PF00266 Aminotransferase class-V H5028_10825 PF01810 LysE type translocator H5028_10830 PF03466 LysR substrate binding domain H5028_10830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_10840 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5028_10845 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5028_10850 PF00005 ABC transporter H5028_10855 PF00528 Binding-protein-dependent transport system inner membrane component H5028_10860 PF00528 Binding-protein-dependent transport system inner membrane component H5028_10875 PF00072 Response regulator receiver domain H5028_10880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_10880 PF00512 His Kinase A (phospho-acceptor) domain H5028_10880 PF09308 LuxQ, periplasmic H5028_10880 PF00072 Response regulator receiver domain H5028_10890 PF01037 Lrp/AsnC ligand binding domain H5028_10890 PF13404 AsnC-type helix-turn-helix domain H5028_10900 PF00717 Peptidase S24-like H5028_10925 PF00199 Catalase H5028_10925 PF06628 Catalase-related immune-responsive H5028_10925 PF18011 C-terminal domain found in long catalases H5028_10935 PF00994 Probable molybdopterin binding domain H5028_10935 PF02464 Competence-damaged protein H5028_10935 PF18146 Damage-inducible protein CinA KH domain H5028_10970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_10970 PF03466 LysR substrate binding domain H5028_10990 PF00501 AMP-binding enzyme H5028_10990 PF13193 AMP-binding enzyme C-terminal domain H5028_10995 PF00440 Bacterial regulatory proteins, tetR family H5028_11000 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_11000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_11000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_11005 PF01039 Carboxyl transferase domain H5028_11010 PF00378 Enoyl-CoA hydratase/isomerase H5028_11015 PF18140 Propionyl-coenzyme A carboxylase BT domain H5028_11015 PF02785 Biotin carboxylase C-terminal domain H5028_11015 PF00289 Biotin carboxylase, N-terminal domain H5028_11015 PF00364 Biotin-requiring enzyme H5028_11015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5028_11020 PF00682 HMGL-like H5028_11025 PF03466 LysR substrate binding domain H5028_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_11040 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_11040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_11040 PF12806 Acetyl-CoA dehydrogenase C-terminal like H5028_11040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_11050 PF07690 Major Facilitator Superfamily H5028_11060 PF01144 Coenzyme A transferase H5028_11065 PF01144 Coenzyme A transferase H5028_11070 PF07690 Major Facilitator Superfamily H5028_11075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_11075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_11075 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_11080 PF00378 Enoyl-CoA hydratase/isomerase H5028_11090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5028_11090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5028_11090 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain H5028_11095 PF02803 Thiolase, C-terminal domain H5028_11095 PF00108 Thiolase, N-terminal domain H5028_11100 PF09339 IclR helix-turn-helix domain H5028_11105 PF07690 Major Facilitator Superfamily H5028_11110 PF03060 Nitronate monooxygenase H5028_11115 PF00378 Enoyl-CoA hydratase/isomerase H5028_11120 PF09339 IclR helix-turn-helix domain H5028_11125 PF02515 CoA-transferase family III H5028_11130 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_11130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_11130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_11135 PF07690 Major Facilitator Superfamily H5028_11140 PF13419 Haloacid dehalogenase-like hydrolase H5028_11145 PF00266 Aminotransferase class-V H5028_11150 PF01266 FAD dependent oxidoreductase H5028_11155 PF00528 Binding-protein-dependent transport system inner membrane component H5028_11160 PF00005 ABC transporter H5028_11160 PF08402 TOBE domain H5028_11170 PF07702 UTRA domain H5028_11170 PF00392 Bacterial regulatory proteins, gntR family H5028_11175 PF01494 FAD binding domain H5028_11180 PF01614 Bacterial transcriptional regulator H5028_11180 PF09339 IclR helix-turn-helix domain H5028_11185 PF02525 Flavodoxin-like fold H5028_11190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_11190 PF03466 LysR substrate binding domain H5028_11195 PF02627 Carboxymuconolactone decarboxylase family H5028_11200 PF00171 Aldehyde dehydrogenase family H5028_11210 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin H5028_11220 PF00171 Aldehyde dehydrogenase family H5028_11225 PF00296 Luciferase-like monooxygenase H5028_11230 PF01613 Flavin reductase like domain H5028_11235 PF12697 Alpha/beta hydrolase family H5028_11255 PF01292 Prokaryotic cytochrome b561 H5028_11260 PF00199 Catalase H5028_11295 PF03061 Thioesterase superfamily H5028_11300 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_11305 PF08223 PaaX-like protein C-terminal domain H5028_11305 PF07848 PaaX-like protein H5028_11310 PF00501 AMP-binding enzyme H5028_11310 PF14535 AMP-binding enzyme C-terminal domain H5028_11315 PF02803 Thiolase, C-terminal domain H5028_11315 PF00108 Thiolase, N-terminal domain H5028_11320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5028_11320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5028_11320 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain H5028_11325 PF00378 Enoyl-CoA hydratase/isomerase H5028_11330 PF00378 Enoyl-CoA hydratase/isomerase H5028_11335 PF00175 Oxidoreductase NAD-binding domain H5028_11335 PF00970 Oxidoreductase FAD-binding domain H5028_11335 PF00111 2Fe-2S iron-sulfur cluster binding domain H5028_11340 PF01883 Iron-sulfur cluster assembly protein H5028_11345 PF05138 Phenylacetic acid catabolic protein H5028_11350 PF06243 Phenylacetic acid degradation B H5028_11355 PF05138 Phenylacetic acid catabolic protein H5028_11360 PF00171 Aldehyde dehydrogenase family H5028_11360 PF01575 MaoC like domain H5028_11365 PF03315 Serine dehydratase beta chain H5028_11365 PF03313 Serine dehydratase alpha chain H5028_11370 PF13520 Amino acid permease H5028_11375 PF00171 Aldehyde dehydrogenase family H5028_11380 PF00083 Sugar (and other) transporter H5028_11390 PF04324 BFD-like [2Fe-2S] binding domain H5028_11390 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_11400 PF01266 FAD dependent oxidoreductase H5028_11405 PF05544 Proline racemase H5028_11410 PF00392 Bacterial regulatory proteins, gntR family H5028_11420 PF00701 Dihydrodipicolinate synthetase family H5028_11430 PF00376 MerR family regulatory protein H5028_11430 PF09278 MerR, DNA binding H5028_11445 PF02677 Epoxyqueuosine reductase QueH H5028_11460 PF07690 Major Facilitator Superfamily H5028_11465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5028_11475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_11475 PF03466 LysR substrate binding domain H5028_11495 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H5028_11500 PF06812 ImpA, N-terminal, type VI secretion system H5028_11505 PF17871 AAA lid domain H5028_11505 PF10431 C-terminal, D2-small domain, of ClpB protein H5028_11505 PF07724 AAA domain (Cdc48 subfamily) H5028_11505 PF00004 ATPase family associated with various cellular activities (AAA) H5028_11515 PF00691 OmpA family H5028_11515 PF01389 OmpA-like transmembrane domain H5028_11525 PF06761 Intracellular multiplication and human macrophage-killing H5028_11525 PF14331 ImcF-related N-terminal domain H5028_11525 PF06744 Type VI secretion protein IcmF C-terminal H5028_11540 PF05947 Type VI secretion system, TssF H5028_11555 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H5028_11580 PF00005 ABC transporter H5028_11585 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5028_11590 PF01425 Amidase H5028_11595 PF08753 NikR C terminal nickel binding domain H5028_11595 PF01402 Ribbon-helix-helix protein, copG family H5028_11615 PF02525 Flavodoxin-like fold H5028_11620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5028_11620 PF00289 Biotin carboxylase, N-terminal domain H5028_11620 PF02785 Biotin carboxylase C-terminal domain H5028_11635 PF00107 Zinc-binding dehydrogenase H5028_11635 PF13823 Alcohol dehydrogenase GroES-associated H5028_11635 PF08240 Alcohol dehydrogenase GroES-like domain H5028_11645 PF00440 Bacterial regulatory proteins, tetR family H5028_11665 PF00654 Voltage gated chloride channel H5028_11670 PF00289 Biotin carboxylase, N-terminal domain H5028_11670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5028_11670 PF00364 Biotin-requiring enzyme H5028_11670 PF02785 Biotin carboxylase C-terminal domain H5028_11680 PF07286 Protein of unknown function (DUF1445) H5028_11685 PF03746 LamB/YcsF family H5028_11690 PF01566 Natural resistance-associated macrophage protein H5028_11695 PF03466 LysR substrate binding domain H5028_11695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_11710 PF05593 RHS Repeat H5028_11710 PF03527 RHS protein H5028_11715 PF04717 Type VI secretion system, phage-baseplate injector H5028_11715 PF13296 Putative type VI secretion system Rhs element Vgr H5028_11715 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H5028_11725 PF13419 Haloacid dehalogenase-like hydrolase H5028_11745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5028_11745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5028_11765 PF07690 Major Facilitator Superfamily H5028_11775 PF03279 Bacterial lipid A biosynthesis acyltransferase H5028_11780 PF00990 Diguanylate cyclase, GGDEF domain H5028_11780 PF03707 Bacterial signalling protein N terminal repeat H5028_11780 PF00563 EAL domain H5028_11785 PF00892 EamA-like transporter family H5028_11790 PF01037 Lrp/AsnC ligand binding domain H5028_11795 PF00488 MutS domain V H5028_11795 PF05190 MutS family domain IV H5028_11795 PF05192 MutS domain III H5028_11795 PF05188 MutS domain II H5028_11795 PF01624 MutS domain I H5028_11805 PF11953 Domain of unknown function (DUF3470) H5028_11805 PF00037 4Fe-4S binding domain H5028_11815 PF01596 O-methyltransferase H5028_11825 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_11830 PF01205 Uncharacterized protein family UPF0029 H5028_11840 PF00005 ABC transporter H5028_11840 PF03412 Peptidase C39 family H5028_11840 PF00664 ABC transporter transmembrane region H5028_11845 PF02321 Outer membrane efflux protein H5028_11850 PF00005 ABC transporter H5028_11850 PF12399 Branched-chain amino acid ATP-binding cassette transporter H5028_11855 PF03968 OstA-like protein H5028_11870 PF00571 CBS domain H5028_11870 PF01380 SIS domain H5028_11875 PF01406 tRNA synthetases class I (C) catalytic domain H5028_11875 PF09190 DALR domain H5028_11900 PF01638 HxlR-like helix-turn-helix H5028_11905 PF07690 Major Facilitator Superfamily H5028_11930 PF14748 Pyrroline-5-carboxylate reductase dimerisation H5028_11930 PF03807 NADP oxidoreductase coenzyme F420-dependent H5028_11940 PF00313 'Cold-shock' DNA-binding domain H5028_11945 PF01810 LysE type translocator H5028_11975 PF02601 Exonuclease VII, large subunit H5028_11975 PF13742 OB-fold nucleic acid binding domain H5028_12010 PF09278 MerR, DNA binding H5028_12010 PF00376 MerR family regulatory protein H5028_12015 PF00403 Heavy-metal-associated domain H5028_12020 PF00403 Heavy-metal-associated domain H5028_12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_12025 PF03466 LysR substrate binding domain H5028_12030 PF00355 Rieske [2Fe-2S] domain H5028_12030 PF00848 Ring hydroxylating alpha subunit (catalytic domain) H5028_12035 PF00866 Ring hydroxylating beta subunit H5028_12040 PF00175 Oxidoreductase NAD-binding domain H5028_12040 PF00111 2Fe-2S iron-sulfur cluster binding domain H5028_12040 PF00970 Oxidoreductase FAD-binding domain H5028_12045 PF00106 short chain dehydrogenase H5028_12050 PF03594 Benzoate membrane transport protein H5028_12055 PF07690 Major Facilitator Superfamily H5028_12065 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H5028_12065 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H5028_12070 PF00270 DEAD/DEAH box helicase H5028_12070 PF11898 Domain of unknown function (DUF3418) H5028_12070 PF04408 Helicase associated domain (HA2) H5028_12070 PF00271 Helicase conserved C-terminal domain H5028_12070 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold H5028_12075 PF00578 AhpC/TSA family H5028_12075 PF10417 C-terminal domain of 1-Cys peroxiredoxin H5028_12095 PF13192 Thioredoxin domain H5028_12095 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_12105 PF00043 Glutathione S-transferase, C-terminal domain H5028_12105 PF02798 Glutathione S-transferase, N-terminal domain H5028_12115 PF02390 Putative methyltransferase H5028_12120 PF00043 Glutathione S-transferase, C-terminal domain H5028_12120 PF13417 Glutathione S-transferase, N-terminal domain H5028_12130 PF00691 OmpA family H5028_12130 PF13488 Glycine zipper H5028_12135 PF01979 Amidohydrolase family H5028_12140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H5028_12140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H5028_12150 PF10672 S-adenosylmethionine-dependent methyltransferase H5028_12150 PF01170 Putative RNA methylase family UPF0020 H5028_12150 PF02926 THUMP domain H5028_12165 PF00004 ATPase family associated with various cellular activities (AAA) H5028_12165 PF07724 AAA domain (Cdc48 subfamily) H5028_12165 PF10431 C-terminal, D2-small domain, of ClpB protein H5028_12165 PF02861 Clp amino terminal domain, pathogenicity island component H5028_12165 PF17871 AAA lid domain H5028_12180 PF02566 OsmC-like protein H5028_12185 PF13545 Crp-like helix-turn-helix domain H5028_12185 PF00027 Cyclic nucleotide-binding domain H5028_12195 PF00248 Aldo/keto reductase family H5028_12210 PF00709 Adenylosuccinate synthetase H5028_12215 PF13393 Histidyl-tRNA synthetase H5028_12220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5028_12220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5028_12225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H5028_12225 PF02272 DHHA1 domain H5028_12225 PF01411 tRNA synthetases class II (A) H5028_12230 PF01842 ACT domain H5028_12230 PF00696 Amino acid kinase family H5028_12230 PF13840 ACT domain H5028_12235 PF02599 Global regulator protein family H5028_12240 PF01351 Ribonuclease HII H5028_12250 PF01292 Prokaryotic cytochrome b561 H5028_12255 PF00962 Adenosine/AMP deaminase H5028_12260 PF00860 Permease family H5028_12270 PF00743 Flavin-binding monooxygenase-like H5028_12275 PF00106 short chain dehydrogenase H5028_12285 PF02678 Pirin H5028_12285 PF17954 Quercetinase C-terminal cupin domain H5028_12290 PF17932 Tetracyclin repressor-like, C-terminal domain H5028_12290 PF00440 Bacterial regulatory proteins, tetR family H5028_12295 PF13610 DDE domain H5028_12300 PF01636 Phosphotransferase enzyme family H5028_12310 PF13610 DDE domain H5028_12315 PF00239 Resolvase, N terminal domain H5028_12315 PF02796 Helix-turn-helix domain of resolvase H5028_12325 PF13610 DDE domain H5028_12335 PF00239 Resolvase, N terminal domain H5028_12335 PF02796 Helix-turn-helix domain of resolvase H5028_12340 PF13610 DDE domain H5028_12355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5028_12355 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_12360 PF00764 Arginosuccinate synthase H5028_12365 PF01590 GAF domain H5028_12365 PF00990 Diguanylate cyclase, GGDEF domain H5028_12365 PF00563 EAL domain H5028_12365 PF00360 Phytochrome region H5028_12370 PF01979 Amidohydrolase family H5028_12375 PF00929 Exonuclease H5028_12385 PF07715 TonB-dependent Receptor Plug Domain H5028_12385 PF00593 TonB dependent receptor H5028_12390 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_12390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5028_12395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5028_12395 PF00005 ABC transporter H5028_12400 PF12911 N-terminal TM domain of oligopeptide transport permease C H5028_12400 PF00528 Binding-protein-dependent transport system inner membrane component H5028_12405 PF00528 Binding-protein-dependent transport system inner membrane component H5028_12410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5028_12415 PF01464 Transglycosylase SLT domain H5028_12415 PF01476 LysM domain H5028_12415 PF01464 Transglycosylase SLT domain H5028_12415 PF01476 LysM domain H5028_12420 PF00929 Exonuclease H5028_12430 PF00293 NUDIX domain H5028_12430 PF09297 NADH pyrophosphatase zinc ribbon domain H5028_12440 PF04972 BON domain H5028_12445 PF02021 Uncharacterised protein family UPF0102 H5028_12450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5028_12460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_12460 PF03466 LysR substrate binding domain H5028_12465 PF01810 LysE type translocator H5028_12475 PF13411 MerR HTH family regulatory protein H5028_12485 PF01494 FAD binding domain H5028_12490 PF01494 FAD binding domain H5028_12495 PF05195 Aminopeptidase P, N-terminal domain H5028_12495 PF00557 Metallopeptidase family M24 H5028_12530 PF08019 Phosphoethanolamine transferase EptA/EptB H5028_12530 PF00884 Sulfatase H5028_12575 PF01476 LysM domain H5028_12575 PF08525 Opacity-associated protein A N-terminal motif H5028_12575 PF01551 Peptidase family M23 H5028_12900 PF01812 5-formyltetrahydrofolate cyclo-ligase family H5028_12905 PF04355 SmpA / OmlA family H5028_12905 PF00691 OmpA family H5028_12910 PF05662 Coiled stalk of trimeric autotransporter adhesin H5028_12910 PF05658 Head domain of trimeric autotransporter adhesin H5028_12910 PF03895 YadA-like membrane anchor domain H5028_12910 PF13018 Extended Signal Peptide of Type V secretion system H5028_12915 PF02190 ATP-dependent protease La (LON) substrate-binding domain H5028_12915 PF05362 Lon protease (S16) C-terminal proteolytic domain H5028_12915 PF00004 ATPase family associated with various cellular activities (AAA) H5028_12920 PF02590 Predicted SPOUT methyltransferase H5028_12925 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase H5028_12935 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase H5028_12935 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain H5028_12940 PF04060 Putative Fe-S cluster H5028_12945 PF10576 Iron-sulfur binding domain of endonuclease III H5028_12945 PF00730 HhH-GPD superfamily base excision DNA repair protein H5028_12945 PF00633 Helix-hairpin-helix motif H5028_12955 PF05191 Adenylate kinase, active site lid H5028_12970 PF00905 Penicillin binding protein transpeptidase domain H5028_12970 PF03717 Penicillin-binding Protein dimerisation domain H5028_12985 PF02492 CobW/HypB/UreG, nucleotide-binding domain H5028_12990 PF01730 UreF H5028_12995 PF02814 UreE urease accessory protein, N-terminal domain H5028_12995 PF05194 UreE urease accessory protein, C-terminal domain H5028_13000 PF01979 Amidohydrolase family H5028_13000 PF00449 Urease alpha-subunit, N-terminal domain H5028_13005 PF00699 Urease beta subunit H5028_13010 PF00547 Urease, gamma subunit H5028_13015 PF01774 UreD urease accessory protein H5028_13030 PF00463 Isocitrate lyase family H5028_13035 PF03466 LysR substrate binding domain H5028_13035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_13040 PF00571 CBS domain H5028_13040 PF01595 Cyclin M transmembrane N-terminal domain H5028_13040 PF03471 Transporter associated domain H5028_13045 PF03600 Citrate transporter H5028_13060 PF00009 Elongation factor Tu GTP binding domain H5028_13065 PF01507 Phosphoadenosine phosphosulfate reductase family H5028_13080 PF14052 Capsule assembly protein Wzi H5028_13085 PF00152 tRNA synthetases class II (D, K and N) H5028_13085 PF01336 OB-fold nucleic acid binding domain H5028_13100 PF00301 Rubredoxin H5028_13105 PF18113 Rubredoxin binding C-terminal domain H5028_13105 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_13110 PF00561 alpha/beta hydrolase fold H5028_13115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_13115 PF03466 LysR substrate binding domain H5028_13125 PF02503 Polyphosphate kinase middle domain H5028_13125 PF17941 Polyphosphate kinase C-terminal domain 1 H5028_13125 PF13089 Polyphosphate kinase N-terminal domain H5028_13125 PF13090 Polyphosphate kinase C-terminal domain 2 H5028_13130 PF00912 Transglycosylase H5028_13135 PF01694 Rhomboid family H5028_13145 PF00005 ABC transporter H5028_13150 PF13472 GDSL-like Lipase/Acylhydrolase family H5028_13155 PF00484 Carbonic anhydrase H5028_13160 PF00561 alpha/beta hydrolase fold H5028_13170 PF00593 TonB dependent receptor H5028_13170 PF07715 TonB-dependent Receptor Plug Domain H5028_13175 PF01106 NifU-like domain H5028_13175 PF01521 Iron-sulphur cluster biosynthesis H5028_13185 PF00884 Sulfatase H5028_13190 PF03781 Sulfatase-modifying factor enzyme 1 H5028_13205 PF00291 Pyridoxal-phosphate dependent enzyme H5028_13210 PF01384 Phosphate transporter family H5028_13215 PF02965 Vitamin B12 dependent methionine synthase, activation domain H5028_13215 PF00809 Pterin binding enzyme H5028_13215 PF02574 Homocysteine S-methyltransferase H5028_13215 PF02310 B12 binding domain H5028_13215 PF02607 B12 binding domain H5028_13220 PF02779 Transketolase, pyrimidine binding domain H5028_13220 PF02780 Transketolase, C-terminal domain H5028_13225 PF00456 Transketolase, thiamine diphosphate binding domain H5028_13230 PF07690 Major Facilitator Superfamily H5028_13240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_13240 PF03466 LysR substrate binding domain H5028_13250 PF01263 Aldose 1-epimerase H5028_13255 PF07690 Major Facilitator Superfamily H5028_13260 PF02311 AraC-like ligand binding domain H5028_13260 PF12833 Helix-turn-helix domain H5028_13265 PF04960 Glutaminase H5028_13270 PF01327 Polypeptide deformylase H5028_13275 PF07690 Major Facilitator Superfamily H5028_13285 PF00205 Thiamine pyrophosphate enzyme, central domain H5028_13285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5028_13285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5028_13290 PF00171 Aldehyde dehydrogenase family H5028_13295 PF01958 Domain of unknown function DUF108 H5028_13295 PF03447 Homoserine dehydrogenase, NAD binding domain H5028_13305 PF12697 Alpha/beta hydrolase family H5028_13315 PF07690 Major Facilitator Superfamily H5028_13320 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_13320 PF14759 Reductase C-terminal H5028_13325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5028_13335 PF00355 Rieske [2Fe-2S] domain H5028_13345 PF00355 Rieske [2Fe-2S] domain H5028_13350 PF09339 IclR helix-turn-helix domain H5028_13350 PF01614 Bacterial transcriptional regulator H5028_13365 PF00378 Enoyl-CoA hydratase/isomerase H5028_13375 PF00535 Glycosyl transferase family 2 H5028_13380 PF14883 Hypothetical glycosyl hydrolase family 13 H5028_13380 PF01522 Polysaccharide deacetylase H5028_13385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5028_13390 PF07152 YaeQ protein H5028_13395 PF00375 Sodium:dicarboxylate symporter family H5028_13400 PF07683 Cobalamin synthesis protein cobW C-terminal domain H5028_13400 PF02492 CobW/HypB/UreG, nucleotide-binding domain H5028_13410 PF03061 Thioesterase superfamily H5028_13420 PF02028 BCCT, betaine/carnitine/choline family transporter H5028_13425 PF02028 BCCT, betaine/carnitine/choline family transporter H5028_13430 PF00440 Bacterial regulatory proteins, tetR family H5028_13430 PF13977 BetI-type transcriptional repressor, C-terminal H5028_13435 PF00171 Aldehyde dehydrogenase family H5028_13440 PF00732 GMC oxidoreductase H5028_13440 PF05199 GMC oxidoreductase H5028_13445 PF06039 Malate:quinone oxidoreductase (Mqo) H5028_13455 PF02574 Homocysteine S-methyltransferase H5028_13460 PF13520 Amino acid permease H5028_13485 PF01126 Heme oxygenase H5028_13495 PF04575 Protein of unknown function (DUF560) H5028_13505 PF07715 TonB-dependent Receptor Plug Domain H5028_13505 PF00593 TonB dependent receptor H5028_13515 PF04542 Sigma-70 region 2 H5028_13515 PF08281 Sigma-70, region 4 H5028_13525 PF00701 Dihydrodipicolinate synthetase family H5028_13530 PF00083 Sugar (and other) transporter H5028_13550 PF01026 TatD related DNase H5028_13565 PF07693 KAP family P-loop domain H5028_13575 PF00665 Integrase core domain H5028_13575 PF13936 Helix-turn-helix domain H5028_13590 PF00436 Single-strand binding protein family H5028_13645 PF13356 Arm DNA-binding domain H5028_13645 PF00589 Phage integrase family H5028_13660 PF00717 Peptidase S24-like H5028_13665 PF00817 impB/mucB/samB family H5028_13665 PF11799 impB/mucB/samB family C-terminal domain H5028_13665 PF13438 Domain of unknown function (DUF4113) H5028_13785 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) H5028_13800 PF06381 Protein of unknown function (DUF1073) H5028_13885 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT H5028_13890 PF01726 LexA DNA binding domain H5028_13890 PF00717 Peptidase S24-like H5028_13960 PF07690 Major Facilitator Superfamily H5028_13965 PF13533 Biotin-lipoyl like H5028_13970 PF03061 Thioesterase superfamily H5028_13975 PF00490 Delta-aminolevulinic acid dehydratase H5028_13980 PF01266 FAD dependent oxidoreductase H5028_13985 PF08338 Domain of unknown function (DUF1731) H5028_13985 PF01370 NAD dependent epimerase/dehydratase family H5028_14005 PF12320 Type 5 capsule protein repressor C-terminal domain H5028_14005 PF00149 Calcineurin-like phosphoesterase H5028_14015 PF01168 Alanine racemase, N-terminal domain H5028_14020 PF00437 Type II/IV secretion system protein H5028_14025 PF00437 Type II/IV secretion system protein H5028_14030 PF01475 Ferric uptake regulator family H5028_14035 PF04355 SmpA / OmlA family H5028_14040 PF03658 RnfH family Ubiquitin H5028_14050 PF01814 Hemerythrin HHE cation binding domain H5028_14055 PF13230 Glutamine amidotransferases class-II H5028_14065 PF00696 Amino acid kinase family H5028_14070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5028_14070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5028_14070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5028_14070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5028_14075 PF00692 dUTPase H5028_14080 PF13361 UvrD-like helicase C-terminal domain H5028_14080 PF00580 UvrD/REP helicase N-terminal domain H5028_14085 PF00691 OmpA family H5028_14085 PF13488 Glycine zipper H5028_14090 PF01553 Acyltransferase H5028_14100 PF03775 Septum formation inhibitor MinC, C-terminal domain H5028_14105 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain H5028_14110 PF03776 Septum formation topological specificity factor MinE H5028_14130 PF01810 LysE type translocator H5028_14135 PF17854 FtsK alpha domain H5028_14135 PF09397 Ftsk gamma domain H5028_14135 PF01580 FtsK/SpoIIIE family H5028_14135 PF13491 4TM region of DNA translocase FtsK/SpoIIIE H5028_14140 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_14145 PF03588 Leucyl/phenylalanyl-tRNA protein transferase H5028_14150 PF04376 Arginine-tRNA-protein transferase, N terminus H5028_14150 PF04377 Arginine-tRNA-protein transferase, C terminus H5028_14155 PF00583 Acetyltransferase (GNAT) family H5028_14170 PF00009 Elongation factor Tu GTP binding domain H5028_14170 PF03143 Elongation factor Tu C-terminal domain H5028_14170 PF03144 Elongation factor Tu domain 2 H5028_14175 PF00679 Elongation factor G C-terminus H5028_14175 PF00009 Elongation factor Tu GTP binding domain H5028_14175 PF03144 Elongation factor Tu domain 2 H5028_14175 PF03764 Elongation factor G, domain IV H5028_14175 PF14492 Elongation Factor G, domain II H5028_14180 PF00177 Ribosomal protein S7p/S5e H5028_14185 PF00164 Ribosomal protein S12/S23 H5028_14195 PF02801 Beta-ketoacyl synthase, C-terminal domain H5028_14195 PF00109 Beta-ketoacyl synthase, N-terminal domain H5028_14200 PF03653 Uncharacterised protein family (UPF0093) H5028_14205 PF05726 Pirin C-terminal cupin domain H5028_14205 PF02678 Pirin H5028_14215 PF00795 Carbon-nitrogen hydrolase H5028_14215 PF02540 NAD synthase H5028_14230 PF00175 Oxidoreductase NAD-binding domain H5028_14230 PF00111 2Fe-2S iron-sulfur cluster binding domain H5028_14230 PF00970 Oxidoreductase FAD-binding domain H5028_14235 PF00171 Aldehyde dehydrogenase family H5028_14240 PF00848 Ring hydroxylating alpha subunit (catalytic domain) H5028_14240 PF00355 Rieske [2Fe-2S] domain H5028_14245 PF07859 alpha/beta hydrolase fold H5028_14250 PF02028 BCCT, betaine/carnitine/choline family transporter H5028_14255 PF00180 Isocitrate/isopropylmalate dehydrogenase H5028_14260 PF03466 LysR substrate binding domain H5028_14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_14280 PF00037 4Fe-4S binding domain H5028_14285 PF01467 Cytidylyltransferase-like H5028_14290 PF01668 SmpB protein H5028_14295 PF03358 NADPH-dependent FMN reductase H5028_14300 PF02578 Multi-copper polyphenol oxidoreductase laccase H5028_14305 PF01479 S4 domain H5028_14305 PF00849 RNA pseudouridylate synthase H5028_14310 PF13525 Outer membrane lipoprotein H5028_14315 PF01807 CHC2 zinc finger H5028_14315 PF08275 DNA primase catalytic core, N-terminal domain H5028_14315 PF08278 DNA primase DnaG DnaB-binding H5028_14315 PF10410 DnaB-helicase binding domain of primase H5028_14320 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain H5028_14320 PF01488 Shikimate / quinate 5-dehydrogenase H5028_14320 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain H5028_14330 PF03550 Outer membrane lipoprotein LolB H5028_14335 PF08544 GHMP kinases C terminal H5028_14335 PF00288 GHMP kinases N terminal domain H5028_14360 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase H5028_14360 PF14572 Phosphoribosyl synthetase-associated domain H5028_14365 PF01386 Ribosomal L25p family H5028_14370 PF01195 Peptidyl-tRNA hydrolase H5028_14375 PF02261 Aspartate decarboxylase H5028_14390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H5028_14400 PF03070 TENA/THI-4/PQQC family H5028_14400 PF08543 Phosphomethylpyrimidine kinase H5028_14400 PF02581 Thiamine monophosphate synthase H5028_14405 PF04972 BON domain H5028_14405 PF01476 LysM domain H5028_14410 PF00550 Phosphopantetheine attachment site H5028_14420 PF00698 Acyl transferase domain H5028_14425 PF01783 Ribosomal L32p protein family H5028_14430 PF02620 Large ribosomal RNA subunit accumulation protein YceD H5028_14435 PF04315 Elongation factor P hydroxylase H5028_14440 PF01300 Telomere recombination H5028_14445 PF02616 Segregation and condensation protein ScpA H5028_14450 PF04079 Segregation and condensation complex subunit ScpB H5028_14455 PF01479 S4 domain H5028_14455 PF00849 RNA pseudouridylate synthase H5028_14470 PF00155 Aminotransferase class I and II H5028_14475 PF06968 Biotin and Thiamin Synthesis associated domain H5028_14475 PF04055 Radical SAM superfamily H5028_14475 PF00202 Aminotransferase class-III H5028_14480 PF12697 Alpha/beta hydrolase family H5028_14480 PF08241 Methyltransferase domain H5028_14485 PF02358 Trehalose-phosphatase H5028_14490 PF00982 Glycosyltransferase family 20 H5028_14495 PF07690 Major Facilitator Superfamily H5028_14500 PF00210 Ferritin-like domain H5028_14505 PF01653 NAD-dependent DNA ligase adenylation domain H5028_14505 PF12826 Helix-hairpin-helix motif H5028_14505 PF03119 NAD-dependent DNA ligase C4 zinc finger domain H5028_14505 PF03120 NAD-dependent DNA ligase OB-fold domain H5028_14505 PF00533 BRCA1 C Terminus (BRCT) domain H5028_14515 PF02463 RecF/RecN/SMC N terminal domain H5028_14515 PF06470 SMC proteins Flexible Hinge Domain H5028_14525 PF01925 Sulfite exporter TauE/SafE H5028_14535 PF03309 Type III pantothenate kinase H5028_14540 PF02978 Signal peptide binding domain H5028_14540 PF00448 SRP54-type protein, GTPase domain H5028_14540 PF02881 SRP54-type protein, helical bundle domain H5028_14550 PF01207 Dihydrouridine synthase (Dus) H5028_14580 PF00692 dUTPase H5028_14595 PF01048 Phosphorylase superfamily H5028_14600 PF10609 NUBPL iron-transfer P-loop NTPase H5028_14610 PF09334 tRNA synthetases class I (M) H5028_14610 PF01588 Putative tRNA binding domain H5028_14635 PF13533 Biotin-lipoyl like H5028_14640 PF00291 Pyridoxal-phosphate dependent enzyme H5028_14655 PF05552 Conserved TM helix H5028_14670 PF00970 Oxidoreductase FAD-binding domain H5028_14670 PF00175 Oxidoreductase NAD-binding domain H5028_14675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_14675 PF03466 LysR substrate binding domain H5028_14680 PF00313 'Cold-shock' DNA-binding domain H5028_14690 PF00361 Proton-conducting membrane transporter H5028_14695 PF00361 Proton-conducting membrane transporter H5028_14700 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus H5028_14700 PF00361 Proton-conducting membrane transporter H5028_14705 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L H5028_14710 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 H5028_14715 PF12838 4Fe-4S dicluster domain H5028_14720 PF00146 NADH dehydrogenase H5028_14725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5028_14725 PF00384 Molybdopterin oxidoreductase H5028_14725 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region H5028_14730 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit H5028_14730 PF10531 SLBB domain H5028_14730 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region H5028_14740 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit H5028_14740 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit H5028_14745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit H5028_14750 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 H5028_14755 PF17151 Periplasmic sensor domain H5028_14755 PF00990 Diguanylate cyclase, GGDEF domain H5028_14765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_14765 PF00672 HAMP domain H5028_14765 PF00512 His Kinase A (phospho-acceptor) domain H5028_14770 PF00072 Response regulator receiver domain H5028_14770 PF00486 Transcriptional regulatory protein, C terminal H5028_14780 PF03477 ATP cone domain H5028_14780 PF02867 Ribonucleotide reductase, barrel domain H5028_14780 PF00317 Ribonucleotide reductase, all-alpha domain H5028_14790 PF00268 Ribonucleotide reductase, small chain H5028_14800 PF00672 HAMP domain H5028_14800 PF13756 Stimulus-sensing domain H5028_14800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_14800 PF00512 His Kinase A (phospho-acceptor) domain H5028_14800 PF13755 Sensor N-terminal transmembrane domain H5028_14870 PF13360 PQQ-like domain H5028_14870 PF01011 PQQ enzyme repeat H5028_14895 PF02567 Phenazine biosynthesis-like protein H5028_14915 PF01613 Flavin reductase like domain H5028_14920 PF08267 Cobalamin-independent synthase, N-terminal domain H5028_14920 PF01717 Cobalamin-independent synthase, Catalytic domain H5028_14930 PF03466 LysR substrate binding domain H5028_14930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_14935 PF01810 LysE type translocator H5028_14945 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H5028_14945 PF12833 Helix-turn-helix domain H5028_14950 PF01546 Peptidase family M20/M25/M40 H5028_14950 PF07687 Peptidase dimerisation domain H5028_14960 PF03466 LysR substrate binding domain H5028_14960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_14965 PF07690 Major Facilitator Superfamily H5028_14975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_14975 PF03466 LysR substrate binding domain H5028_14980 PF00890 FAD binding domain H5028_14980 PF14537 Cytochrome c3 H5028_14990 PF02515 CoA-transferase family III H5028_14995 PF07690 Major Facilitator Superfamily H5028_15000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_15000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_15000 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_15005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_15005 PF03466 LysR substrate binding domain H5028_15010 PF08240 Alcohol dehydrogenase GroES-like domain H5028_15010 PF00107 Zinc-binding dehydrogenase H5028_15015 PF00962 Adenosine/AMP deaminase H5028_15040 PF02445 Quinolinate synthetase A protein H5028_15045 PF01960 ArgJ family H5028_15050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H5028_15050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain H5028_15055 PF00893 Small Multidrug Resistance protein H5028_15065 PF05275 Copper resistance protein B precursor (CopB) H5028_15070 PF00394 Multicopper oxidase H5028_15070 PF07731 Multicopper oxidase H5028_15070 PF07732 Multicopper oxidase H5028_15085 PF00834 Ribulose-phosphate 3 epimerase family H5028_15095 PF00756 Putative esterase H5028_15105 PF04445 Putative SAM-dependent methyltransferase H5028_15110 PF00814 Glycoprotease family H5028_15115 PF00132 Bacterial transferase hexapeptide (six repeats) H5028_15120 PF00293 NUDIX domain H5028_15165 PF04715 Anthranilate synthase component I, N terminal region H5028_15165 PF00425 chorismate binding enzyme H5028_15170 PF00155 Aminotransferase class I and II H5028_15175 PF00815 Histidinol dehydrogenase H5028_15180 PF01634 ATP phosphoribosyltransferase H5028_15185 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H5028_15190 PF01722 BolA-like protein H5028_15195 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H5028_15200 PF04552 Sigma-54, DNA binding domain H5028_15200 PF04963 Sigma-54 factor, core binding domain H5028_15200 PF00309 Sigma-54 factor, Activator interacting domain (AID) H5028_15245 PF00795 Carbon-nitrogen hydrolase H5028_15255 PF01047 MarR family H5028_15260 PF02566 OsmC-like protein H5028_15265 PF00437 Type II/IV secretion system protein H5028_15295 PF01367 5'-3' exonuclease, C-terminal SAM fold H5028_15295 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H5028_15295 PF00476 DNA polymerase family A H5028_15295 PF01612 3'-5' exonuclease H5028_15300 PF02325 YGGT family H5028_15305 PF03807 NADP oxidoreductase coenzyme F420-dependent H5028_15305 PF14748 Pyrroline-5-carboxylate reductase dimerisation H5028_15310 PF09179 TilS substrate binding domain H5028_15310 PF01171 PP-loop family H5028_15310 PF11734 TilS substrate C-terminal domain H5028_15315 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit H5028_15320 PF02541 Ppx/GppA phosphatase family H5028_15325 PF00085 Thioredoxin H5028_15330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5028_15330 PF07498 Rho termination factor, N-terminal domain H5028_15330 PF07497 Rho termination factor, RNA-binding domain H5028_15345 PF00216 Bacterial DNA-binding protein H5028_15350 PF03483 B3/4 domain H5028_15350 PF03484 tRNA synthetase B5 domain H5028_15350 PF03147 Ferredoxin-fold anticodon binding domain H5028_15350 PF01588 Putative tRNA binding domain H5028_15350 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain H5028_15355 PF01409 tRNA synthetases class II core domain (F) H5028_15355 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain H5028_15375 PF00453 Ribosomal protein L20 H5028_15380 PF01632 Ribosomal protein L35 H5028_15385 PF07690 Major Facilitator Superfamily H5028_15390 PF09335 SNARE associated Golgi protein H5028_15395 PF00043 Glutathione S-transferase, C-terminal domain H5028_15395 PF02798 Glutathione S-transferase, N-terminal domain H5028_15400 PF05198 Translation initiation factor IF-3, N-terminal domain H5028_15400 PF00707 Translation initiation factor IF-3, C-terminal domain H5028_15405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H5028_15405 PF02824 TGS domain H5028_15405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5028_15405 PF03129 Anticodon binding domain H5028_15410 PF13193 AMP-binding enzyme C-terminal domain H5028_15410 PF00501 AMP-binding enzyme H5028_15415 PF04751 Protein of unknown function (DUF615) H5028_15420 PF00381 PTS HPr component phosphorylation site H5028_15425 PF03668 P-loop ATPase protein family H5028_15430 PF02569 Pantoate-beta-alanine ligase H5028_15435 PF02548 Ketopantoate hydroxymethyltransferase H5028_15440 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H5028_15445 PF12626 Polymerase A arginine-rich C-terminus H5028_15445 PF12627 Probable RNA and SrmB- binding site of polymerase A H5028_15445 PF01743 Poly A polymerase head domain H5028_15455 PF03819 MazG nucleotide pyrophosphohydrolase domain H5028_15465 PF04607 Region found in RelA / SpoT proteins H5028_15465 PF02824 TGS domain H5028_15465 PF13291 ACT domain H5028_15470 PF05958 tRNA (Uracil-5-)-methyltransferase H5028_15480 PF00291 Pyridoxal-phosphate dependent enzyme H5028_15485 PF00072 Response regulator receiver domain H5028_15485 PF01627 Hpt domain H5028_15485 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5028_15485 PF00512 His Kinase A (phospho-acceptor) domain H5028_15485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_15485 PF00672 HAMP domain H5028_15490 PF00378 Enoyl-CoA hydratase/isomerase H5028_15495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5028_15495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5028_15500 PF01261 Xylose isomerase-like TIM barrel H5028_15510 PF00106 short chain dehydrogenase H5028_15515 PF02233 NAD(P) transhydrogenase beta subunit H5028_15520 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch H5028_15525 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H5028_15525 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H5028_15530 PF00892 EamA-like transporter family H5028_15540 PF07690 Major Facilitator Superfamily H5028_15545 PF01207 Dihydrouridine synthase (Dus) H5028_15555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_15555 PF03466 LysR substrate binding domain H5028_15565 PF00899 ThiF family H5028_15570 PF00330 Aconitase family (aconitate hydratase) H5028_15570 PF00694 Aconitase C-terminal domain H5028_15575 PF01026 TatD related DNase H5028_15590 PF00009 Elongation factor Tu GTP binding domain H5028_15590 PF16658 Class II release factor RF3, C-terminal domain H5028_15590 PF03144 Elongation factor Tu domain 2 H5028_15610 PF03707 Bacterial signalling protein N terminal repeat H5028_15610 PF00990 Diguanylate cyclase, GGDEF domain H5028_15610 PF00563 EAL domain H5028_15615 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain H5028_15615 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain H5028_15620 PF10369 Small subunit of acetolactate synthase H5028_15625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5028_15625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5028_15625 PF00205 Thiamine pyrophosphate enzyme, central domain H5028_15640 PF09334 tRNA synthetases class I (M) H5028_15640 PF13603 Leucyl-tRNA synthetase, Domain 2 H5028_15640 PF00133 tRNA synthetases class I (I, L, M and V) H5028_15640 PF08264 Anticodon-binding domain of tRNA H5028_15655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5028_15660 PF00005 ABC transporter H5028_15660 PF02687 FtsX-like permease family H5028_15660 PF12704 MacB-like periplasmic core domain H5028_15665 PF02321 Outer membrane efflux protein H5028_15680 PF00929 Exonuclease H5028_15685 PF03193 RsgA GTPase H5028_15695 PF00462 Glutaredoxin H5028_15700 PF02556 Preprotein translocase subunit SecB H5028_15710 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal H5028_15710 PF01926 50S ribosome-binding GTPase H5028_15715 PF13360 PQQ-like domain H5028_15725 PF13393 Histidyl-tRNA synthetase H5028_15725 PF03129 Anticodon binding domain H5028_15730 PF04551 GcpE protein H5028_15735 PF13464 Domain of unknown function (DUF4115) H5028_15745 PF04055 Radical SAM superfamily H5028_15750 PF00334 Nucleoside diphosphate kinase H5028_15755 PF04384 Iron-sulphur cluster assembly H5028_15760 PF01569 PAP2 superfamily H5028_15765 PF13439 Glycosyltransferase Family 4 H5028_15765 PF00534 Glycosyl transferases group 1 H5028_15770 PF17804 Tail specific protease N-terminal domain H5028_15770 PF03572 Peptidase family S41 H5028_15770 PF00595 PDZ domain H5028_15770 PF11818 C-terminal domain of tail specific protease (DUF3340) H5028_15775 PF00933 Glycosyl hydrolase family 3 N terminal domain H5028_15785 PF12697 Alpha/beta hydrolase family H5028_15790 PF00171 Aldehyde dehydrogenase family H5028_15795 PF00171 Aldehyde dehydrogenase family H5028_15800 PF01202 Shikimate kinase H5028_15805 PF02447 GntP family permease H5028_15810 PF01081 KDPG and KHG aldolase H5028_15815 PF00920 Dehydratase family H5028_15820 PF00871 Acetokinase family H5028_15825 PF07085 DRTGG domain H5028_15825 PF01515 Phosphate acetyl/butaryl transferase H5028_15830 PF05681 Fumarate hydratase (Fumerase) H5028_15830 PF05683 Fumarase C-terminus H5028_15845 PF07724 AAA domain (Cdc48 subfamily) H5028_15845 PF10431 C-terminal, D2-small domain, of ClpB protein H5028_15845 PF06689 ClpX C4-type zinc finger H5028_15850 PF00574 Clp protease H5028_15855 PF05698 Bacterial trigger factor protein (TF) C-terminus H5028_15855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5028_15855 PF05697 Bacterial trigger factor protein (TF) H5028_15860 PF00593 TonB dependent receptor H5028_15860 PF07715 TonB-dependent Receptor Plug Domain H5028_15865 PF13640 2OG-Fe(II) oxygenase superfamily H5028_15865 PF18331 PKHD-type hydroxylase C-terminal domain H5028_15870 PF08502 LeuA allosteric (dimerisation) domain H5028_15870 PF00682 HMGL-like H5028_15875 PF00561 alpha/beta hydrolase fold H5028_15880 PF00561 alpha/beta hydrolase fold H5028_15880 PF07021 Methionine biosynthesis protein MetW H5028_15890 PF01725 Ham1 family H5028_15900 PF02416 mttA/Hcf106 family H5028_15905 PF02416 mttA/Hcf106 family H5028_15910 PF00902 Sec-independent protein translocase protein (TatC) H5028_15930 PF01790 Prolipoprotein diacylglyceryl transferase H5028_15945 PF00303 Thymidylate synthase H5028_15950 PF00186 Dihydrofolate reductase H5028_15960 PF01625 Peptide methionine sulfoxide reductase H5028_15970 PF01618 MotA/TolQ/ExbB proton channel family H5028_15980 PF00551 Formyl transferase H5028_15980 PF01842 ACT domain H5028_15990 PF00171 Aldehyde dehydrogenase family H5028_15995 PF00830 Ribosomal L28 family H5028_16000 PF00471 Ribosomal protein L33 H5028_16005 PF00999 Sodium/hydrogen exchanger family H5028_16005 PF02254 TrkA-N domain H5028_16025 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) H5028_16030 PF00580 UvrD/REP helicase N-terminal domain H5028_16030 PF13361 UvrD-like helicase C-terminal domain H5028_16045 PF01396 Topoisomerase DNA binding C4 zinc finger H5028_16045 PF01751 Toprim domain H5028_16045 PF01131 DNA topoisomerase H5028_16045 PF08272 Topoisomerase I zinc-ribbon-like H5028_16055 PF01638 HxlR-like helix-turn-helix H5028_16060 PF00107 Zinc-binding dehydrogenase H5028_16060 PF08240 Alcohol dehydrogenase GroES-like domain H5028_16065 PF04102 SlyX H5028_16070 PF12848 ABC transporter H5028_16070 PF16326 ABC transporter C-terminal domain H5028_16070 PF00005 ABC transporter H5028_16075 PF01810 LysE type translocator H5028_16080 PF03279 Bacterial lipid A biosynthesis acyltransferase H5028_16090 PF00375 Sodium:dicarboxylate symporter family H5028_16100 PF01118 Semialdehyde dehydrogenase, NAD binding domain H5028_16100 PF02774 Semialdehyde dehydrogenase, dimerisation domain H5028_16115 PF00710 Asparaginase, N-terminal H5028_16115 PF17763 Glutaminase/Asparaginase C-terminal domain H5028_16120 PF01416 tRNA pseudouridine synthase H5028_16130 PF01176 Translation initiation factor 1A / IF-1 H5028_16145 PF00180 Isocitrate/isopropylmalate dehydrogenase H5028_16155 PF00694 Aconitase C-terminal domain H5028_16160 PF00330 Aconitase family (aconitate hydratase) H5028_16170 PF03466 LysR substrate binding domain H5028_16170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_16180 PF00293 NUDIX domain H5028_16185 PF01590 GAF domain H5028_16185 PF05524 PEP-utilising enzyme, N-terminal H5028_16185 PF02896 PEP-utilising enzyme, TIM barrel domain H5028_16185 PF00391 PEP-utilising enzyme, mobile domain H5028_16190 PF00141 Peroxidase H5028_16195 PF12706 Beta-lactamase superfamily domain H5028_16200 PF03466 LysR substrate binding domain H5028_16200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_16210 PF02798 Glutathione S-transferase, N-terminal domain H5028_16215 PF13280 WYL domain H5028_16215 PF08279 HTH domain H5028_16220 PF13419 Haloacid dehalogenase-like hydrolase H5028_16225 PF00849 RNA pseudouridylate synthase H5028_16225 PF01479 S4 domain H5028_16230 PF10150 Ribonuclease E/G family H5028_16230 PF00575 S1 RNA binding domain H5028_16230 PF12111 Polyribonucleotide phosphorylase C terminal H5028_16235 PF00501 AMP-binding enzyme H5028_16235 PF13193 AMP-binding enzyme C-terminal domain H5028_16250 PF03466 LysR substrate binding domain H5028_16250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5028_16260 PF04055 Radical SAM superfamily H5028_16260 PF06969 HemN C-terminal domain H5028_16270 PF01554 MatE H5028_16275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_16275 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_16275 PF08028 Acyl-CoA dehydrogenase, C-terminal domain H5028_16280 PF08028 Acyl-CoA dehydrogenase, C-terminal domain H5028_16280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_16285 PF03109 ABC1 family H5028_16290 PF01197 Ribosomal protein L31 H5028_16305 PF02537 CrcB-like protein, Camphor Resistance (CrcB) H5028_16315 PF13247 4Fe-4S dicluster domain H5028_16315 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5028_16315 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H5028_16325 PF03884 DNA gyrase inhibitor YacG H5028_16330 PF00753 Metallo-beta-lactamase superfamily H5028_16335 PF00762 Ferrochelatase H5028_16345 PF01177 Asp/Glu/Hydantoin racemase H5028_16365 PF01206 Sulfurtransferase TusA H5028_16370 PF03471 Transporter associated domain H5028_16370 PF00571 CBS domain H5028_16375 PF00795 Carbon-nitrogen hydrolase H5028_16380 PF01588 Putative tRNA binding domain H5028_16390 PF08334 Type II secretion system (T2SS), protein G H5028_16390 PF07963 Prokaryotic N-terminal methylation motif H5028_16395 PF00482 Type II secretion system (T2SS), protein F H5028_16400 PF00270 DEAD/DEAH box helicase H5028_16400 PF00271 Helicase conserved C-terminal domain H5028_16400 PF17764 3′ DNA-binding domain (3′BD) H5028_16400 PF18074 Primosomal protein N C-terminal domain H5028_16400 PF18319 PriA DNA helicase Cys-rich region (CRR) domain H5028_16405 PF02254 TrkA-N domain H5028_16405 PF00999 Sodium/hydrogen exchanger family H5028_16410 PF01430 Hsp33 protein H5028_16420 PF01556 DnaJ C terminal domain H5028_16420 PF00226 DnaJ domain H5028_16430 PF01544 CorA-like Mg2+ transporter protein H5028_16435 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain H5028_16435 PF00013 KH domain H5028_16435 PF00575 S1 RNA binding domain H5028_16435 PF01138 3' exoribonuclease family, domain 1 H5028_16435 PF03725 3' exoribonuclease family, domain 2 H5028_16440 PF00312 Ribosomal protein S15 H5028_16445 PF00144 Beta-lactamase H5028_16450 PF13538 UvrD-like helicase C-terminal domain H5028_16455 PF00580 UvrD/REP helicase N-terminal domain H5028_16455 PF13361 UvrD-like helicase C-terminal domain H5028_16455 PF12705 PD-(D/E)XK nuclease superfamily H5028_16460 PF17946 RecC C-terminal domain H5028_16470 PF03976 Polyphosphate kinase 2 (PPK2) H5028_16480 PF01209 ubiE/COQ5 methyltransferase family H5028_16490 PF03109 ABC1 family H5028_16495 PF01494 FAD binding domain H5028_16500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5028_16505 PF01502 Phosphoribosyl-AMP cyclohydrolase H5028_16520 PF13244 Domain of unknown function (DUF4040) H5028_16520 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus H5028_16520 PF00361 Proton-conducting membrane transporter H5028_16520 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter H5028_16525 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L H5028_16530 PF00361 Proton-conducting membrane transporter H5028_16535 PF01899 Na+/H+ ion antiporter subunit H5028_16540 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) H5028_16545 PF03334 Na+/H+ antiporter subunit H5028_16550 PF02033 Ribosome-binding factor A H5028_16555 PF08364 Bacterial translation initiation factor IF-2 associated region H5028_16555 PF04760 Translation initiation factor IF-2, N-terminal region H5028_16555 PF11987 Translation-initiation factor 2 H5028_16555 PF00009 Elongation factor Tu GTP binding domain H5028_16560 PF08529 NusA N-terminal domain H5028_16560 PF13184 NusA-like KH domain H5028_16560 PF00575 S1 RNA binding domain H5028_16565 PF02576 RimP N-terminal domain H5028_16565 PF17384 RimP C-terminal SH3 domain H5028_16585 PF03840 Preprotein translocase SecG subunit H5028_16590 PF00121 Triosephosphate isomerase H5028_16595 PF00437 Type II/IV secretion system protein H5028_16595 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H5028_16600 PF00482 Type II secretion system (T2SS), protein F H5028_16605 PF01478 Type IV leader peptidase family H5028_16605 PF06750 Bacterial Peptidase A24 N-terminal domain H5028_16610 PF01121 Dephospho-CoA kinase H5028_16620 PF08032 RNA 2'-O ribose methyltransferase substrate binding H5028_16620 PF00588 SpoU rRNA Methylase family H5028_16625 PF06865 Pyrimidine/purine nucleoside phosphorylase H5028_16635 PF02463 RecF/RecN/SMC N terminal domain H5028_16640 PF02622 Uncharacterized ACR, COG1678 H5028_16645 PF03652 Holliday junction resolvase H5028_16650 PF13533 Biotin-lipoyl like H5028_16675 PF02805 Metal binding domain of Ada H5028_16675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H5028_16675 PF12833 Helix-turn-helix domain H5028_16675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain H5028_16680 PF01066 CDP-alcohol phosphatidyltransferase H5028_16690 PF08459 UvrC Helix-hairpin-helix N-terminal H5028_16690 PF02151 UvrB/uvrC motif H5028_16690 PF01541 GIY-YIG catalytic domain H5028_16705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5028_16705 PF00378 Enoyl-CoA hydratase/isomerase H5028_16705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5028_16710 PF00108 Thiolase, N-terminal domain H5028_16710 PF02803 Thiolase, C-terminal domain H5028_16725 PF09278 MerR, DNA binding H5028_16725 PF00376 MerR family regulatory protein H5028_16735 PF01323 DSBA-like thioredoxin domain H5028_16750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_16750 PF00183 Hsp90 protein H5028_16765 PF03553 Na+/H+ antiporter family H5028_16765 PF13726 Na+-H+ antiporter family H5028_16790 PF04998 RNA polymerase Rpb1, domain 5 H5028_16790 PF04997 RNA polymerase Rpb1, domain 1 H5028_16790 PF00623 RNA polymerase Rpb1, domain 2 H5028_16790 PF04983 RNA polymerase Rpb1, domain 3 H5028_16790 PF05000 RNA polymerase Rpb1, domain 4 H5028_16795 PF04561 RNA polymerase Rpb2, domain 2 H5028_16795 PF04563 RNA polymerase beta subunit H5028_16795 PF10385 RNA polymerase beta subunit external 1 domain H5028_16795 PF00562 RNA polymerase Rpb2, domain 6 H5028_16795 PF04560 RNA polymerase Rpb2, domain 7 H5028_16795 PF04565 RNA polymerase Rpb2, domain 3 H5028_16800 PF00542 Ribosomal protein L7/L12 C-terminal domain H5028_16800 PF16320 Ribosomal protein L7/L12 dimerisation domain H5028_16805 PF00466 Ribosomal protein L10 H5028_16810 PF00687 Ribosomal protein L1p/L10e family H5028_16815 PF03946 Ribosomal protein L11, N-terminal domain H5028_16815 PF00298 Ribosomal protein L11, RNA binding domain H5028_16820 PF02357 Transcription termination factor nusG H5028_16820 PF00467 KOW motif H5028_16825 PF00584 SecE/Sec61-gamma subunits of protein translocation complex H5028_16835 PF03143 Elongation factor Tu C-terminal domain H5028_16835 PF00009 Elongation factor Tu GTP binding domain H5028_16835 PF03144 Elongation factor Tu domain 2 H5028_16860 PF00425 chorismate binding enzyme H5028_16860 PF04715 Anthranilate synthase component I, N terminal region H5028_16865 PF13419 Haloacid dehalogenase-like hydrolase H5028_16870 PF12401 Protein of unknown function (DUF2662) H5028_16870 PF00498 FHA domain H5028_16875 PF03958 Bacterial type II/III secretion system short domain H5028_16875 PF00263 Bacterial type II and III secretion system protein H5028_16890 PF00816 H-NS histone family H5028_16915 PF03900 Porphobilinogen deaminase, C-terminal domain H5028_16915 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain H5028_16920 PF00072 Response regulator receiver domain H5028_16920 PF04397 LytTr DNA-binding domain H5028_16925 PF07694 5TMR of 5TMR-LYT H5028_16925 PF06580 Histidine kinase H5028_16925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_16930 PF00206 Lyase H5028_16930 PF14698 Argininosuccinate lyase C-terminal H5028_16935 PF04362 Bacterial Fe(2+) trafficking H5028_16940 PF01895 PhoU domain H5028_16950 PF00892 EamA-like transporter family H5028_16965 PF01964 Radical SAM ThiC family H5028_16965 PF13667 ThiC-associated domain H5028_16970 PF00293 NUDIX domain H5028_16975 PF00149 Calcineurin-like phosphoesterase H5028_16980 PF01258 Prokaryotic dksA/traR C4-type zinc finger H5028_16985 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5028_16990 PF01098 Cell cycle protein H5028_16995 PF02875 Mur ligase family, glutamate ligase domain H5028_16995 PF08245 Mur ligase middle domain H5028_17005 PF07664 Ferrous iron transport protein B C terminus H5028_17005 PF02421 Ferrous iron transport protein B H5028_17005 PF07670 Nucleoside recognition H5028_17015 PF02899 Phage integrase, N-terminal SAM-like domain H5028_17015 PF00589 Phage integrase family H5028_17020 PF13098 Thioredoxin-like domain H5028_17020 PF10411 Disulfide bond isomerase protein N-terminus H5028_17025 PF00742 Homoserine dehydrogenase H5028_17025 PF03447 Homoserine dehydrogenase, NAD binding domain H5028_17025 PF01842 ACT domain H5028_17030 PF00291 Pyridoxal-phosphate dependent enzyme H5028_17035 PF00768 D-alanyl-D-alanine carboxypeptidase H5028_17040 PF00072 Response regulator receiver domain H5028_17040 PF00196 Bacterial regulatory proteins, luxR family H5028_17045 PF00512 His Kinase A (phospho-acceptor) domain H5028_17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5028_17050 PF00072 Response regulator receiver domain H5028_17050 PF02954 Bacterial regulatory protein, Fis family H5028_17050 PF00158 Sigma-54 interaction domain H5028_17055 PF03572 Peptidase family S41 H5028_17055 PF00595 PDZ domain H5028_17060 PF01676 Metalloenzyme superfamily H5028_17060 PF06415 BPG-independent PGAM N-terminus (iPGM_N) H5028_17065 PF03739 Lipopolysaccharide export system permease LptF/LptG H5028_17075 PF00883 Cytosol aminopeptidase family, catalytic domain H5028_17075 PF02789 Cytosol aminopeptidase family, N-terminal domain H5028_17095 PF00677 Lumazine binding domain H5028_17105 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5028_17105 PF01872 RibD C-terminal domain H5028_17110 PF03477 ATP cone domain H5028_17115 PF00909 Ammonium Transporter Family H5028_17120 PF00543 Nitrogen regulatory protein P-II H5028_17130 PF01078 Magnesium chelatase, subunit ChlI H5028_17130 PF13335 Magnesium chelatase, subunit ChlI C-terminal H5028_17140 PF01740 STAS domain H5028_17140 PF00916 Sulfate permease family H5028_17145 PF00582 Universal stress protein family H5028_17175 PF00665 Integrase core domain H5028_17185 PF13335 Magnesium chelatase, subunit ChlI C-terminal H5028_17185 PF01078 Magnesium chelatase, subunit ChlI H5028_17190 PF00155 Aminotransferase class I and II H5028_17190 PF00392 Bacterial regulatory proteins, gntR family H5028_17200 PF00701 Dihydrodipicolinate synthetase family H5028_17210 PF03573 outer membrane porin, OprD family H5028_17215 PF00719 Inorganic pyrophosphatase H5028_17230 PF13193 AMP-binding enzyme C-terminal domain H5028_17230 PF00501 AMP-binding enzyme H5028_17235 PF03989 DNA gyrase C-terminal domain, beta-propeller H5028_17235 PF00521 DNA gyrase/topoisomerase IV, subunit A H5028_17240 PF07690 Major Facilitator Superfamily H5028_17245 PF03458 UPF0126 domain H5028_17250 PF02810 SEC-C motif H5028_17255 PF03741 Integral membrane protein TerC family H5028_17255 PF03471 Transporter associated domain H5028_17260 PF03641 Possible lysine decarboxylase H5028_17265 PF07690 Major Facilitator Superfamily H5028_17275 PF00817 impB/mucB/samB family H5028_17275 PF11799 impB/mucB/samB family C-terminal domain H5028_17275 PF11798 IMS family HHH motif H5028_17290 PF08497 Radical SAM N-terminal H5028_17290 PF04055 Radical SAM superfamily H5028_17290 PF11842 Domain of unknown function (DUF3362) H5028_17310 PF03358 NADPH-dependent FMN reductase H5028_17320 PF00291 Pyridoxal-phosphate dependent enzyme H5028_17355 PF00440 Bacterial regulatory proteins, tetR family H5028_17380 PF01327 Polypeptide deformylase H5028_17390 PF17782 DprA winged helix domain H5028_17390 PF02481 DNA recombination-mediator protein A H5028_17395 PF01300 Telomere recombination H5028_17400 PF00892 EamA-like transporter family H5028_17405 PF00440 Bacterial regulatory proteins, tetR family H5028_17410 PF07690 Major Facilitator Superfamily H5028_17420 PF00255 Glutathione peroxidase H5028_17430 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain H5028_17435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5028_17435 PF02874 ATP synthase alpha/beta family, beta-barrel domain H5028_17440 PF00231 ATP synthase H5028_17445 PF02874 ATP synthase alpha/beta family, beta-barrel domain H5028_17445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5028_17445 PF00306 ATP synthase alpha/beta chain, C terminal domain H5028_17450 PF00213 ATP synthase delta (OSCP) subunit H5028_17455 PF00430 ATP synthase B/B' CF(0) H5028_17460 PF00137 ATP synthase subunit C H5028_17465 PF00119 ATP synthase A chain H5028_17485 PF00005 ABC transporter H5028_17490 PF00950 ABC 3 transport family H5028_17495 PF01810 LysE type translocator H5028_17500 PF04261 Dyp-type peroxidase family H5028_17505 PF03949 Malic enzyme, NAD binding domain H5028_17505 PF00390 Malic enzyme, N-terminal domain H5028_17510 PF03485 Arginyl tRNA synthetase N terminal domain H5028_17510 PF00750 tRNA synthetases class I (R) H5028_17510 PF05746 DALR anticodon binding domain H5028_17530 PF05726 Pirin C-terminal cupin domain H5028_17530 PF02678 Pirin H5028_17540 PF03551 Transcriptional regulator PadR-like family H5028_17545 PF13427 Domain of unknown function (DUF4111) H5028_17545 PF01909 Nucleotidyltransferase domain H5028_17550 PF00117 Glutamine amidotransferase class-I H5028_17550 PF00958 GMP synthase C terminal domain H5028_17550 PF02540 NAD synthase H5028_17555 PF04286 Protein of unknown function (DUF445) H5028_17560 PF07681 DoxX H5028_17565 PF09335 SNARE associated Golgi protein H5028_17580 PF13614 AAA domain H5028_17590 PF01722 BolA-like protein H5028_17605 PF01648 4'-phosphopantetheinyl transferase superfamily H5028_17610 PF16363 GDP-mannose 4,6 dehydratase H5028_17625 PF00501 AMP-binding enzyme H5028_17625 PF00975 Thioesterase domain H5028_17625 PF13193 AMP-binding enzyme C-terminal domain H5028_17625 PF00668 Condensation domain H5028_17625 PF00550 Phosphopantetheine attachment site H5028_17630 PF16197 Ketoacyl-synthetase C-terminal extension H5028_17630 PF00109 Beta-ketoacyl synthase, N-terminal domain H5028_17630 PF02801 Beta-ketoacyl synthase, C-terminal domain H5028_17630 PF08242 Methyltransferase domain H5028_17630 PF00550 Phosphopantetheine attachment site H5028_17630 PF14765 Polyketide synthase dehydratase H5028_17630 PF00975 Thioesterase domain H5028_17635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_17635 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_17635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_17640 PF00501 AMP-binding enzyme H5028_17645 PF00196 Bacterial regulatory proteins, luxR family H5028_17645 PF03472 Autoinducer binding domain H5028_17655 PF00765 Autoinducer synthase H5028_17660 PF00083 Sugar (and other) transporter H5028_17660 PF07690 Major Facilitator Superfamily H5028_17665 PF00378 Enoyl-CoA hydratase/isomerase H5028_17670 PF00378 Enoyl-CoA hydratase/isomerase H5028_17675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5028_17675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5028_17675 PF02770 Acyl-CoA dehydrogenase, middle domain H5028_17680 PF13193 AMP-binding enzyme C-terminal domain H5028_17680 PF00501 AMP-binding enzyme H5028_17685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5028_17685 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5028_17690 PF00171 Aldehyde dehydrogenase family H5028_17700 PF00324 Amino acid permease H5028_17705 PF00324 Amino acid permease H5028_17710 PF01042 Endoribonuclease L-PSP H5028_17715 PF01168 Alanine racemase, N-terminal domain H5028_17715 PF00842 Alanine racemase, C-terminal domain H5028_17720 PF01266 FAD dependent oxidoreductase H5028_17725 PF01037 Lrp/AsnC ligand binding domain H5028_17735 PF00593 TonB dependent receptor H5028_17735 PF07715 TonB-dependent Receptor Plug Domain H5028_17750 PF00849 RNA pseudouridylate synthase H5028_17795 PF00330 Aconitase family (aconitate hydratase) H5028_17795 PF00694 Aconitase C-terminal domain H5028_17800 PF00285 Citrate synthase, C-terminal domain H5028_17810 PF07729 FCD domain H5028_17810 PF00392 Bacterial regulatory proteins, gntR family H5028_17820 PF00155 Aminotransferase class I and II H5028_17825 PF01565 FAD binding domain H5028_17825 PF09330 D-lactate dehydrogenase, membrane binding H5028_17830 PF01070 FMN-dependent dehydrogenase H5028_17835 PF00392 Bacterial regulatory proteins, gntR family H5028_17835 PF07729 FCD domain H5028_17840 PF02652 L-lactate permease H5028_17845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5028_17845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5028_17845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5028_17845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5028_17855 PF16363 GDP-mannose 4,6 dehydratase H5028_17860 PF00342 Phosphoglucose isomerase H5028_17865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain H5028_17865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain H5028_17865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain H5028_17870 PF00483 Nucleotidyl transferase H5028_17875 PF02397 Bacterial sugar transferase H5028_17880 PF00535 Glycosyl transferase family 2 H5028_17885 PF00534 Glycosyl transferases group 1 H5028_17895 PF00535 Glycosyl transferase family 2 H5028_17895 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase H5028_17900 PF00535 Glycosyl transferase family 2 H5028_17900 PF01501 Glycosyl transferase family 8 H5028_17910 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain H5028_17910 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain H5028_17910 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain H5028_17915 PF18412 Outer-membrane lipoprotein Wza C-terminal domain H5028_17915 PF10531 SLBB domain H5028_17915 PF02563 Polysaccharide biosynthesis/export protein H5028_17920 PF01451 Low molecular weight phosphotyrosine protein phosphatase H5028_17925 PF02706 Chain length determinant protein H5028_17925 PF13614 AAA domain H5028_17925 PF13807 G-rich domain on putative tyrosine kinase H5028_17930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H5028_17930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5028_17935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5028_17935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H5028_17940 PF03023 Lipid II flippase MurJ H5028_17945 PF01510 N-acetylmuramoyl-L-alanine amidase H5028_17950 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain H5028_17950 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain H5028_17960 PF04185 Phosphoesterase family H5028_17960 PF05506 Domain of unknown function (DUF756) H5028_17965 PF03725 3' exoribonuclease family, domain 2 H5028_17965 PF01138 3' exoribonuclease family, domain 1 H5028_17970 PF00487 Fatty acid desaturase H5028_17975 PF00175 Oxidoreductase NAD-binding domain H5028_17980 PF00440 Bacterial regulatory proteins, tetR family H5028_17985 PF08360 QacR-like protein, C-terminal region H5028_17985 PF00440 Bacterial regulatory proteins, tetR family H5028_17990 PF01323 DSBA-like thioredoxin domain H5028_18000 PF13419 Haloacid dehalogenase-like hydrolase H5028_18005 PF00106 short chain dehydrogenase H5028_18020 PF00696 Amino acid kinase family H5028_18020 PF00583 Acetyltransferase (GNAT) family H5028_18025 PF09084 NMT1/THI5 like H5028_18030 PF09084 NMT1/THI5 like H5028_18035 PF00296 Luciferase-like monooxygenase H5028_18040 PF00528 Binding-protein-dependent transport system inner membrane component H5028_18045 PF00005 ABC transporter H5028_18050 PF08362 YcdC-like protein, C-terminal region H5028_18050 PF00440 Bacterial regulatory proteins, tetR family H5028_18055 PF01048 Phosphorylase superfamily H5028_18065 PF06574 FAD synthetase H5028_18065 PF01687 Riboflavin kinase H5028_18070 PF08264 Anticodon-binding domain of tRNA H5028_18070 PF06827 Zinc finger found in FPG and IleRS H5028_18070 PF00133 tRNA synthetases class I (I, L, M and V) H5028_18075 PF01252 Signal peptidase (SPase) II H5028_18080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5028_18120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H5028_18125 PF07859 alpha/beta hydrolase fold H5028_18150 PF01025 GrpE H5028_18155 PF00012 Hsp70 protein H5028_18175 PF13406 Transglycosylase SLT domain H5028_18180 PF02222 ATP-grasp domain H5028_18180 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain H5028_18185 PF00731 AIR carboxylase H5028_18195 PF08245 Mur ligase middle domain H5028_18195 PF02875 Mur ligase family, glutamate ligase domain H5028_18195 PF01225 Mur ligase family, catalytic domain H5028_18205 PF01569 PAP2 superfamily H5028_18210 PF03741 Integral membrane protein TerC family H5028_18220 PF03738 Glutathionylspermidine synthase preATP-grasp H5028_18225 PF00355 Rieske [2Fe-2S] domain H5028_18230 PF01979 Amidohydrolase family H5028_18235 PF00156 Phosphoribosyl transferase domain H5028_18245 PF13098 Thioredoxin-like domain H5028_18245 PF10411 Disulfide bond isomerase protein N-terminus H5028_18250 PF16916 Dimerisation domain of Zinc Transporter H5028_18250 PF01545 Cation efflux family H5028_18255 PF02583 Metal-sensitive transcriptional repressor H5028_18260 PF10396 GTP-binding protein TrmE N-terminus H5028_18260 PF12631 MnmE helical domain H5028_18260 PF01926 50S ribosome-binding GTPase H5028_18265 PF02096 60Kd inner membrane protein H5028_18265 PF14849 YidC periplasmic domain H5028_18270 PF01809 Putative membrane protein insertion efficiency factor H5028_18275 PF00825 Ribonuclease P H5028_18280 PF00468 Ribosomal protein L34 H5028_18315 PF00593 TonB dependent receptor H5028_18315 PF07715 TonB-dependent Receptor Plug Domain