locus-tag class description KQ254_00010 PF00563 EAL domain KQ254_00010 PF00990 Diguanylate cyclase, GGDEF domain KQ254_00010 PF03707 Bacterial signalling protein N terminal repeat KQ254_00015 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KQ254_00015 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KQ254_00020 PF10369 Small subunit of acetolactate synthase KQ254_00025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ254_00025 PF00205 Thiamine pyrophosphate enzyme, central domain KQ254_00025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ254_00035 PF09334 tRNA synthetases class I (M) KQ254_00035 PF13603 Leucyl-tRNA synthetase, Domain 2 KQ254_00035 PF00133 tRNA synthetases class I (I, L, M and V) KQ254_00035 PF08264 Anticodon-binding domain of tRNA KQ254_00050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ254_00055 PF00005 ABC transporter KQ254_00055 PF02687 FtsX-like permease family KQ254_00055 PF12704 MacB-like periplasmic core domain KQ254_00060 PF02321 Outer membrane efflux protein KQ254_00075 PF00929 Exonuclease KQ254_00080 PF03193 RsgA GTPase KQ254_00090 PF00462 Glutaredoxin KQ254_00095 PF02556 Preprotein translocase subunit SecB KQ254_00105 PF01926 50S ribosome-binding GTPase KQ254_00105 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KQ254_00110 PF13360 PQQ-like domain KQ254_00120 PF13393 Histidyl-tRNA synthetase KQ254_00120 PF03129 Anticodon binding domain KQ254_00125 PF04551 GcpE protein KQ254_00130 PF13464 Domain of unknown function (DUF4115) KQ254_00140 PF04055 Radical SAM superfamily KQ254_00145 PF00334 Nucleoside diphosphate kinase KQ254_00150 PF04384 Iron-sulphur cluster assembly KQ254_00155 PF01569 PAP2 superfamily KQ254_00160 PF00534 Glycosyl transferases group 1 KQ254_00160 PF13439 Glycosyltransferase Family 4 KQ254_00165 PF00595 PDZ domain KQ254_00165 PF17804 Tail specific protease N-terminal domain KQ254_00165 PF03572 Peptidase family S41 KQ254_00165 PF11818 C-terminal domain of tail specific protease (DUF3340) KQ254_00170 PF00933 Glycosyl hydrolase family 3 N terminal domain KQ254_00180 PF00561 alpha/beta hydrolase fold KQ254_00185 PF00171 Aldehyde dehydrogenase family KQ254_00190 PF00171 Aldehyde dehydrogenase family KQ254_00195 PF01202 Shikimate kinase KQ254_00200 PF02447 GntP family permease KQ254_00205 PF01081 KDPG and KHG aldolase KQ254_00210 PF00920 Dehydratase family KQ254_00215 PF00871 Acetokinase family KQ254_00220 PF01515 Phosphate acetyl/butaryl transferase KQ254_00220 PF07085 DRTGG domain KQ254_00225 PF05683 Fumarase C-terminus KQ254_00225 PF05681 Fumarate hydratase (Fumerase) KQ254_00240 PF10431 C-terminal, D2-small domain, of ClpB protein KQ254_00240 PF06689 ClpX C4-type zinc finger KQ254_00240 PF07724 AAA domain (Cdc48 subfamily) KQ254_00245 PF00574 Clp protease KQ254_00250 PF05697 Bacterial trigger factor protein (TF) KQ254_00250 PF05698 Bacterial trigger factor protein (TF) C-terminus KQ254_00250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ254_00255 PF00593 TonB dependent receptor KQ254_00255 PF07715 TonB-dependent Receptor Plug Domain KQ254_00260 PF13640 2OG-Fe(II) oxygenase superfamily KQ254_00260 PF18331 PKHD-type hydroxylase C-terminal domain KQ254_00265 PF00682 HMGL-like KQ254_00265 PF08502 LeuA allosteric (dimerisation) domain KQ254_00270 PF00561 alpha/beta hydrolase fold KQ254_00275 PF07021 Methionine biosynthesis protein MetW KQ254_00275 PF00561 alpha/beta hydrolase fold KQ254_00285 PF01725 Ham1 family KQ254_00295 PF02416 mttA/Hcf106 family KQ254_00300 PF02416 mttA/Hcf106 family KQ254_00305 PF00902 Sec-independent protein translocase protein (TatC) KQ254_00325 PF01790 Prolipoprotein diacylglyceryl transferase KQ254_00340 PF00303 Thymidylate synthase KQ254_00345 PF00186 Dihydrofolate reductase KQ254_00355 PF01625 Peptide methionine sulfoxide reductase KQ254_00365 PF01618 MotA/TolQ/ExbB proton channel family KQ254_00375 PF01842 ACT domain KQ254_00375 PF00551 Formyl transferase KQ254_00385 PF00171 Aldehyde dehydrogenase family KQ254_00390 PF00830 Ribosomal L28 family KQ254_00395 PF00471 Ribosomal protein L33 KQ254_00400 PF02254 TrkA-N domain KQ254_00400 PF00999 Sodium/hydrogen exchanger family KQ254_00420 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KQ254_00425 PF00580 UvrD/REP helicase N-terminal domain KQ254_00425 PF13361 UvrD-like helicase C-terminal domain KQ254_00440 PF01131 DNA topoisomerase KQ254_00440 PF01396 Topoisomerase DNA binding C4 zinc finger KQ254_00440 PF01751 Toprim domain KQ254_00440 PF08272 Topoisomerase I zinc-ribbon-like KQ254_00450 PF01638 HxlR-like helix-turn-helix KQ254_00455 PF08240 Alcohol dehydrogenase GroES-like domain KQ254_00455 PF00107 Zinc-binding dehydrogenase KQ254_00460 PF04102 SlyX KQ254_00465 PF00005 ABC transporter KQ254_00465 PF16326 ABC transporter C-terminal domain KQ254_00465 PF12848 ABC transporter KQ254_00470 PF01810 LysE type translocator KQ254_00475 PF03279 Bacterial lipid A biosynthesis acyltransferase KQ254_00485 PF00375 Sodium:dicarboxylate symporter family KQ254_00495 PF02774 Semialdehyde dehydrogenase, dimerisation domain KQ254_00495 PF01118 Semialdehyde dehydrogenase, NAD binding domain KQ254_00515 PF01416 tRNA pseudouridine synthase KQ254_00525 PF01176 Translation initiation factor 1A / IF-1 KQ254_00540 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ254_00550 PF00694 Aconitase C-terminal domain KQ254_00555 PF00330 Aconitase family (aconitate hydratase) KQ254_00565 PF03466 LysR substrate binding domain KQ254_00565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_00575 PF00293 NUDIX domain KQ254_00580 PF01590 GAF domain KQ254_00580 PF05524 PEP-utilising enzyme, N-terminal KQ254_00580 PF00391 PEP-utilising enzyme, mobile domain KQ254_00580 PF02896 PEP-utilising enzyme, TIM barrel domain KQ254_00585 PF00141 Peroxidase KQ254_00590 PF12706 Beta-lactamase superfamily domain KQ254_00595 PF03466 LysR substrate binding domain KQ254_00595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_00605 PF02798 Glutathione S-transferase, N-terminal domain KQ254_00610 PF13280 WYL domain KQ254_00610 PF08279 HTH domain KQ254_00615 PF13419 Haloacid dehalogenase-like hydrolase KQ254_00620 PF01479 S4 domain KQ254_00620 PF00849 RNA pseudouridylate synthase KQ254_00625 PF10150 Ribonuclease E/G family KQ254_00625 PF12111 Polyribonucleotide phosphorylase C terminal KQ254_00625 PF00575 S1 RNA binding domain KQ254_00630 PF00501 AMP-binding enzyme KQ254_00630 PF13193 AMP-binding enzyme C-terminal domain KQ254_00645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_00645 PF03466 LysR substrate binding domain KQ254_00650 PF00106 short chain dehydrogenase KQ254_00655 PF04055 Radical SAM superfamily KQ254_00655 PF06969 HemN C-terminal domain KQ254_00665 PF01554 MatE KQ254_00670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_00670 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ254_00670 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_00675 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ254_00675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_00680 PF03109 ABC1 family KQ254_00685 PF01197 Ribosomal protein L31 KQ254_00700 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KQ254_00710 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KQ254_00710 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_00710 PF13247 4Fe-4S dicluster domain KQ254_00720 PF03884 DNA gyrase inhibitor YacG KQ254_00725 PF00753 Metallo-beta-lactamase superfamily KQ254_00730 PF00762 Ferrochelatase KQ254_00740 PF01177 Asp/Glu/Hydantoin racemase KQ254_00755 PF01206 Sulfurtransferase TusA KQ254_00760 PF03471 Transporter associated domain KQ254_00760 PF00571 CBS domain KQ254_00765 PF00795 Carbon-nitrogen hydrolase KQ254_00770 PF01588 Putative tRNA binding domain KQ254_00780 PF08334 Type II secretion system (T2SS), protein G KQ254_00780 PF07963 Prokaryotic N-terminal methylation motif KQ254_00785 PF00482 Type II secretion system (T2SS), protein F KQ254_00790 PF00270 DEAD/DEAH box helicase KQ254_00790 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KQ254_00790 PF00271 Helicase conserved C-terminal domain KQ254_00790 PF17764 3′ DNA-binding domain (3′BD) KQ254_00790 PF18074 Primosomal protein N C-terminal domain KQ254_00795 PF00999 Sodium/hydrogen exchanger family KQ254_00795 PF02254 TrkA-N domain KQ254_00800 PF01430 Hsp33 protein KQ254_00810 PF00226 DnaJ domain KQ254_00810 PF01556 DnaJ C terminal domain KQ254_00820 PF01544 CorA-like Mg2+ transporter protein KQ254_00825 PF00575 S1 RNA binding domain KQ254_00825 PF00013 KH domain KQ254_00825 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KQ254_00825 PF01138 3' exoribonuclease family, domain 1 KQ254_00825 PF03725 3' exoribonuclease family, domain 2 KQ254_00830 PF00312 Ribosomal protein S15 KQ254_00835 PF00144 Beta-lactamase KQ254_00840 PF13538 UvrD-like helicase C-terminal domain KQ254_00845 PF12705 PD-(D/E)XK nuclease superfamily KQ254_00845 PF00580 UvrD/REP helicase N-terminal domain KQ254_00845 PF13361 UvrD-like helicase C-terminal domain KQ254_00850 PF17946 RecC C-terminal domain KQ254_00860 PF03976 Polyphosphate kinase 2 (PPK2) KQ254_00870 PF01209 ubiE/COQ5 methyltransferase family KQ254_00880 PF03109 ABC1 family KQ254_00885 PF01494 FAD binding domain KQ254_00890 PF01502 Phosphoribosyl-AMP cyclohydrolase KQ254_00905 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KQ254_00905 PF00361 Proton-conducting membrane transporter KQ254_00905 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KQ254_00905 PF13244 Domain of unknown function (DUF4040) KQ254_00910 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KQ254_00915 PF00361 Proton-conducting membrane transporter KQ254_00920 PF01899 Na+/H+ ion antiporter subunit KQ254_00925 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KQ254_00930 PF03334 Na+/H+ antiporter subunit KQ254_00935 PF02033 Ribosome-binding factor A KQ254_00940 PF04760 Translation initiation factor IF-2, N-terminal region KQ254_00940 PF08364 Bacterial translation initiation factor IF-2 associated region KQ254_00940 PF11987 Translation-initiation factor 2 KQ254_00940 PF00009 Elongation factor Tu GTP binding domain KQ254_00945 PF00575 S1 RNA binding domain KQ254_00945 PF08529 NusA N-terminal domain KQ254_00945 PF13184 NusA-like KH domain KQ254_00950 PF17384 RimP C-terminal SH3 domain KQ254_00950 PF02576 RimP N-terminal domain KQ254_00970 PF03840 Preprotein translocase SecG subunit KQ254_00975 PF00121 Triosephosphate isomerase KQ254_00985 PF00482 Type II secretion system (T2SS), protein F KQ254_00990 PF01478 Type IV leader peptidase family KQ254_00990 PF06750 Bacterial Peptidase A24 N-terminal domain KQ254_00995 PF01121 Dephospho-CoA kinase KQ254_01005 PF08032 RNA 2'-O ribose methyltransferase substrate binding KQ254_01005 PF00588 SpoU rRNA Methylase family KQ254_01010 PF06865 Pyrimidine/purine nucleoside phosphorylase KQ254_01020 PF02463 RecF/RecN/SMC N terminal domain KQ254_01025 PF02622 Uncharacterized ACR, COG1678 KQ254_01030 PF03652 Holliday junction resolvase KQ254_01035 PF13533 Biotin-lipoyl like KQ254_01060 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KQ254_01060 PF12833 Helix-turn-helix domain KQ254_01060 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ254_01060 PF02805 Metal binding domain of Ada KQ254_01065 PF01066 CDP-alcohol phosphatidyltransferase KQ254_01075 PF02151 UvrB/uvrC motif KQ254_01075 PF01541 GIY-YIG catalytic domain KQ254_01075 PF08459 UvrC Helix-hairpin-helix N-terminal KQ254_01090 PF00378 Enoyl-CoA hydratase/isomerase KQ254_01090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ254_01090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ254_01095 PF00108 Thiolase, N-terminal domain KQ254_01095 PF02803 Thiolase, C-terminal domain KQ254_01110 PF09278 MerR, DNA binding KQ254_01110 PF00376 MerR family regulatory protein KQ254_01120 PF01323 DSBA-like thioredoxin domain KQ254_01135 PF00183 Hsp90 protein KQ254_01135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_01150 PF03553 Na+/H+ antiporter family KQ254_01150 PF13726 Na+-H+ antiporter family KQ254_01175 PF05000 RNA polymerase Rpb1, domain 4 KQ254_01175 PF00623 RNA polymerase Rpb1, domain 2 KQ254_01175 PF04998 RNA polymerase Rpb1, domain 5 KQ254_01175 PF04997 RNA polymerase Rpb1, domain 1 KQ254_01175 PF04983 RNA polymerase Rpb1, domain 3 KQ254_01180 PF04561 RNA polymerase Rpb2, domain 2 KQ254_01180 PF00562 RNA polymerase Rpb2, domain 6 KQ254_01180 PF04560 RNA polymerase Rpb2, domain 7 KQ254_01180 PF04563 RNA polymerase beta subunit KQ254_01180 PF10385 RNA polymerase beta subunit external 1 domain KQ254_01180 PF04565 RNA polymerase Rpb2, domain 3 KQ254_01185 PF00542 Ribosomal protein L7/L12 C-terminal domain KQ254_01185 PF16320 Ribosomal protein L7/L12 dimerisation domain KQ254_01190 PF00466 Ribosomal protein L10 KQ254_01195 PF00687 Ribosomal protein L1p/L10e family KQ254_01200 PF00298 Ribosomal protein L11, RNA binding domain KQ254_01200 PF03946 Ribosomal protein L11, N-terminal domain KQ254_01205 PF00467 KOW motif KQ254_01205 PF02357 Transcription termination factor nusG KQ254_01210 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KQ254_01220 PF00009 Elongation factor Tu GTP binding domain KQ254_01220 PF03144 Elongation factor Tu domain 2 KQ254_01220 PF03143 Elongation factor Tu C-terminal domain KQ254_01245 PF04715 Anthranilate synthase component I, N terminal region KQ254_01245 PF00425 chorismate binding enzyme KQ254_01250 PF13419 Haloacid dehalogenase-like hydrolase KQ254_01255 PF12401 Protein of unknown function (DUF2662) KQ254_01255 PF00498 FHA domain KQ254_01260 PF00263 Bacterial type II and III secretion system protein KQ254_01260 PF03958 Bacterial type II/III secretion system short domain KQ254_01275 PF00816 H-NS histone family KQ254_01300 PF03900 Porphobilinogen deaminase, C-terminal domain KQ254_01300 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KQ254_01305 PF00072 Response regulator receiver domain KQ254_01305 PF04397 LytTr DNA-binding domain KQ254_01310 PF06580 Histidine kinase KQ254_01310 PF07694 5TMR of 5TMR-LYT KQ254_01310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_01315 PF14698 Argininosuccinate lyase C-terminal KQ254_01315 PF00206 Lyase KQ254_01320 PF04362 Bacterial Fe(2+) trafficking KQ254_01325 PF01895 PhoU domain KQ254_01330 PF02321 Outer membrane efflux protein KQ254_01335 PF00892 EamA-like transporter family KQ254_01350 PF13667 ThiC-associated domain KQ254_01350 PF01964 Radical SAM ThiC family KQ254_01355 PF00293 NUDIX domain KQ254_01360 PF00149 Calcineurin-like phosphoesterase KQ254_01365 PF01258 Prokaryotic dksA/traR C4-type zinc finger KQ254_01370 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ254_01375 PF01098 Cell cycle protein KQ254_01380 PF02875 Mur ligase family, glutamate ligase domain KQ254_01380 PF08245 Mur ligase middle domain KQ254_01390 PF07670 Nucleoside recognition KQ254_01390 PF02421 Ferrous iron transport protein B KQ254_01390 PF07664 Ferrous iron transport protein B C terminus KQ254_01400 PF00589 Phage integrase family KQ254_01400 PF02899 Phage integrase, N-terminal SAM-like domain KQ254_01405 PF10411 Disulfide bond isomerase protein N-terminus KQ254_01405 PF13098 Thioredoxin-like domain KQ254_01410 PF01842 ACT domain KQ254_01410 PF03447 Homoserine dehydrogenase, NAD binding domain KQ254_01410 PF00742 Homoserine dehydrogenase KQ254_01415 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_01420 PF00768 D-alanyl-D-alanine carboxypeptidase KQ254_01425 PF00072 Response regulator receiver domain KQ254_01425 PF00196 Bacterial regulatory proteins, luxR family KQ254_01430 PF00512 His Kinase A (phospho-acceptor) domain KQ254_01430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_01435 PF00158 Sigma-54 interaction domain KQ254_01435 PF00072 Response regulator receiver domain KQ254_01435 PF02954 Bacterial regulatory protein, Fis family KQ254_01440 PF00595 PDZ domain KQ254_01440 PF03572 Peptidase family S41 KQ254_01445 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KQ254_01445 PF01676 Metalloenzyme superfamily KQ254_01450 PF03739 Lipopolysaccharide export system permease LptF/LptG KQ254_01460 PF00883 Cytosol aminopeptidase family, catalytic domain KQ254_01460 PF02789 Cytosol aminopeptidase family, N-terminal domain KQ254_01480 PF00677 Lumazine binding domain KQ254_01490 PF01872 RibD C-terminal domain KQ254_01490 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KQ254_01495 PF03477 ATP cone domain KQ254_01500 PF00909 Ammonium Transporter Family KQ254_01505 PF00543 Nitrogen regulatory protein P-II KQ254_01515 PF01078 Magnesium chelatase, subunit ChlI KQ254_01515 PF13335 Magnesium chelatase, subunit ChlI C-terminal KQ254_01525 PF13737 Transposase DDE domain KQ254_01540 PF13411 MerR HTH family regulatory protein KQ254_01555 PF07664 Ferrous iron transport protein B C terminus KQ254_01555 PF02421 Ferrous iron transport protein B KQ254_01555 PF07670 Nucleoside recognition KQ254_01575 PF00155 Aminotransferase class I and II KQ254_01575 PF00392 Bacterial regulatory proteins, gntR family KQ254_01580 PF00596 Class II Aldolase and Adducin N-terminal domain KQ254_01585 PF00701 Dihydrodipicolinate synthetase family KQ254_01595 PF03573 outer membrane porin, OprD family KQ254_01600 PF00719 Inorganic pyrophosphatase KQ254_01615 PF13193 AMP-binding enzyme C-terminal domain KQ254_01615 PF00501 AMP-binding enzyme KQ254_01620 PF03989 DNA gyrase C-terminal domain, beta-propeller KQ254_01620 PF00521 DNA gyrase/topoisomerase IV, subunit A KQ254_01625 PF07690 Major Facilitator Superfamily KQ254_01630 PF03458 UPF0126 domain KQ254_01635 PF02810 SEC-C motif KQ254_01640 PF03471 Transporter associated domain KQ254_01640 PF03741 Integral membrane protein TerC family KQ254_01645 PF03641 Possible lysine decarboxylase KQ254_01650 PF07690 Major Facilitator Superfamily KQ254_01660 PF00817 impB/mucB/samB family KQ254_01660 PF11799 impB/mucB/samB family C-terminal domain KQ254_01660 PF11798 IMS family HHH motif KQ254_01675 PF04055 Radical SAM superfamily KQ254_01675 PF08497 Radical SAM N-terminal KQ254_01675 PF11842 Domain of unknown function (DUF3362) KQ254_01695 PF03358 NADPH-dependent FMN reductase KQ254_01705 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_01740 PF00440 Bacterial regulatory proteins, tetR family KQ254_01765 PF01327 Polypeptide deformylase KQ254_01775 PF02481 DNA recombination-mediator protein A KQ254_01775 PF17782 DprA winged helix domain KQ254_01780 PF01300 Telomere recombination KQ254_01785 PF00892 EamA-like transporter family KQ254_01790 PF00440 Bacterial regulatory proteins, tetR family KQ254_01795 PF07690 Major Facilitator Superfamily KQ254_01805 PF00255 Glutathione peroxidase KQ254_01815 PF11008 Protein of unknown function (DUF2846) KQ254_01820 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KQ254_01825 PF02874 ATP synthase alpha/beta family, beta-barrel domain KQ254_01825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ254_01830 PF00231 ATP synthase KQ254_01835 PF00306 ATP synthase alpha/beta chain, C terminal domain KQ254_01835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ254_01835 PF02874 ATP synthase alpha/beta family, beta-barrel domain KQ254_01840 PF00213 ATP synthase delta (OSCP) subunit KQ254_01845 PF00430 ATP synthase B/B' CF(0) KQ254_01850 PF00137 ATP synthase subunit C KQ254_01855 PF00119 ATP synthase A chain KQ254_01875 PF00005 ABC transporter KQ254_01880 PF00950 ABC 3 transport family KQ254_01885 PF01810 LysE type translocator KQ254_01890 PF04261 Dyp-type peroxidase family KQ254_01900 PF00390 Malic enzyme, N-terminal domain KQ254_01900 PF03949 Malic enzyme, NAD binding domain KQ254_01905 PF03485 Arginyl tRNA synthetase N terminal domain KQ254_01905 PF05746 DALR anticodon binding domain KQ254_01905 PF00750 tRNA synthetases class I (R) KQ254_01925 PF05726 Pirin C-terminal cupin domain KQ254_01925 PF02678 Pirin KQ254_01935 PF03551 Transcriptional regulator PadR-like family KQ254_01940 PF13427 Domain of unknown function (DUF4111) KQ254_01940 PF01909 Nucleotidyltransferase domain KQ254_01945 PF00117 Glutamine amidotransferase class-I KQ254_01945 PF00958 GMP synthase C terminal domain KQ254_01945 PF02540 NAD synthase KQ254_01950 PF04286 Protein of unknown function (DUF445) KQ254_01955 PF07681 DoxX KQ254_01960 PF09335 SNARE associated Golgi protein KQ254_01975 PF13614 AAA domain KQ254_01985 PF01722 BolA-like protein KQ254_02000 PF01648 4'-phosphopantetheinyl transferase superfamily KQ254_02005 PF16363 GDP-mannose 4,6 dehydratase KQ254_02020 PF00975 Thioesterase domain KQ254_02020 PF13193 AMP-binding enzyme C-terminal domain KQ254_02020 PF00668 Condensation domain KQ254_02020 PF00501 AMP-binding enzyme KQ254_02020 PF00550 Phosphopantetheine attachment site KQ254_02025 PF16197 Ketoacyl-synthetase C-terminal extension KQ254_02025 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ254_02025 PF08242 Methyltransferase domain KQ254_02025 PF00550 Phosphopantetheine attachment site KQ254_02025 PF14765 Polyketide synthase dehydratase KQ254_02025 PF00975 Thioesterase domain KQ254_02025 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ254_02030 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_02030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_02030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_02035 PF00501 AMP-binding enzyme KQ254_02040 PF00196 Bacterial regulatory proteins, luxR family KQ254_02040 PF03472 Autoinducer binding domain KQ254_02050 PF00765 Autoinducer synthase KQ254_02055 PF00083 Sugar (and other) transporter KQ254_02055 PF07690 Major Facilitator Superfamily KQ254_02060 PF00378 Enoyl-CoA hydratase/isomerase KQ254_02065 PF00378 Enoyl-CoA hydratase/isomerase KQ254_02070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_02070 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_02070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_02075 PF13193 AMP-binding enzyme C-terminal domain KQ254_02075 PF00501 AMP-binding enzyme KQ254_02080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ254_02080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ254_02085 PF00171 Aldehyde dehydrogenase family KQ254_02095 PF00324 Amino acid permease KQ254_02100 PF00324 Amino acid permease KQ254_02105 PF01042 Endoribonuclease L-PSP KQ254_02110 PF01168 Alanine racemase, N-terminal domain KQ254_02110 PF00842 Alanine racemase, C-terminal domain KQ254_02115 PF01266 FAD dependent oxidoreductase KQ254_02120 PF01037 Lrp/AsnC ligand binding domain KQ254_02130 PF07715 TonB-dependent Receptor Plug Domain KQ254_02130 PF00593 TonB dependent receptor KQ254_02145 PF00849 RNA pseudouridylate synthase KQ254_02160 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ254_02160 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ254_02190 PF00293 NUDIX domain KQ254_02210 PF00330 Aconitase family (aconitate hydratase) KQ254_02210 PF00694 Aconitase C-terminal domain KQ254_02215 PF00285 Citrate synthase, C-terminal domain KQ254_02225 PF00392 Bacterial regulatory proteins, gntR family KQ254_02225 PF07729 FCD domain KQ254_02235 PF00155 Aminotransferase class I and II KQ254_02240 PF09330 D-lactate dehydrogenase, membrane binding KQ254_02240 PF01565 FAD binding domain KQ254_02245 PF01070 FMN-dependent dehydrogenase KQ254_02250 PF07729 FCD domain KQ254_02250 PF00392 Bacterial regulatory proteins, gntR family KQ254_02255 PF02652 L-lactate permease KQ254_02260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ254_02260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ254_02260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ254_02260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ254_02265 PF16363 GDP-mannose 4,6 dehydratase KQ254_02270 PF00342 Phosphoglucose isomerase KQ254_02275 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KQ254_02275 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KQ254_02275 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KQ254_02280 PF00483 Nucleotidyl transferase KQ254_02285 PF02397 Bacterial sugar transferase KQ254_02290 PF00953 Glycosyl transferase family 4 KQ254_02295 PF01370 NAD dependent epimerase/dehydratase family KQ254_02300 PF13579 Glycosyl transferase 4-like domain KQ254_02305 PF02350 UDP-N-acetylglucosamine 2-epimerase KQ254_02310 PF01370 NAD dependent epimerase/dehydratase family KQ254_02315 PF02719 Polysaccharide biosynthesis protein KQ254_02315 PF08485 Polysaccharide biosynthesis protein C-terminal KQ254_02340 PF01370 NAD dependent epimerase/dehydratase family KQ254_02345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KQ254_02345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KQ254_02345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KQ254_02350 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KQ254_02350 PF10531 SLBB domain KQ254_02350 PF02563 Polysaccharide biosynthesis/export protein KQ254_02355 PF01451 Low molecular weight phosphotyrosine protein phosphatase KQ254_02360 PF02706 Chain length determinant protein KQ254_02360 PF13807 G-rich domain on putative tyrosine kinase KQ254_02360 PF13614 AAA domain KQ254_02365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ254_02365 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KQ254_02370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ254_02370 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KQ254_02375 PF03023 Lipid II flippase MurJ KQ254_02380 PF01510 N-acetylmuramoyl-L-alanine amidase KQ254_02385 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KQ254_02385 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KQ254_02395 PF04185 Phosphoesterase family KQ254_02395 PF05506 Domain of unknown function (DUF756) KQ254_02400 PF01138 3' exoribonuclease family, domain 1 KQ254_02400 PF03725 3' exoribonuclease family, domain 2 KQ254_02405 PF00487 Fatty acid desaturase KQ254_02410 PF00175 Oxidoreductase NAD-binding domain KQ254_02415 PF00440 Bacterial regulatory proteins, tetR family KQ254_02420 PF08360 QacR-like protein, C-terminal region KQ254_02420 PF00440 Bacterial regulatory proteins, tetR family KQ254_02425 PF01323 DSBA-like thioredoxin domain KQ254_02435 PF13419 Haloacid dehalogenase-like hydrolase KQ254_02440 PF00106 short chain dehydrogenase KQ254_02455 PF00696 Amino acid kinase family KQ254_02455 PF00583 Acetyltransferase (GNAT) family KQ254_02460 PF09084 NMT1/THI5 like KQ254_02465 PF09084 NMT1/THI5 like KQ254_02470 PF00296 Luciferase-like monooxygenase KQ254_02475 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_02480 PF00005 ABC transporter KQ254_02485 PF00440 Bacterial regulatory proteins, tetR family KQ254_02485 PF08362 YcdC-like protein, C-terminal region KQ254_02490 PF01048 Phosphorylase superfamily KQ254_02500 PF06574 FAD synthetase KQ254_02500 PF01687 Riboflavin kinase KQ254_02505 PF08264 Anticodon-binding domain of tRNA KQ254_02505 PF00133 tRNA synthetases class I (I, L, M and V) KQ254_02505 PF06827 Zinc finger found in FPG and IleRS KQ254_02510 PF01252 Signal peptidase (SPase) II KQ254_02515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ254_02555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KQ254_02560 PF07859 alpha/beta hydrolase fold KQ254_02585 PF01025 GrpE KQ254_02590 PF00012 Hsp70 protein KQ254_02610 PF13406 Transglycosylase SLT domain KQ254_02615 PF02222 ATP-grasp domain KQ254_02615 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KQ254_02620 PF00731 AIR carboxylase KQ254_02630 PF08245 Mur ligase middle domain KQ254_02630 PF02875 Mur ligase family, glutamate ligase domain KQ254_02630 PF01225 Mur ligase family, catalytic domain KQ254_02640 PF00872 Transposase, Mutator family KQ254_02650 PF01569 PAP2 superfamily KQ254_02655 PF03741 Integral membrane protein TerC family KQ254_02665 PF03738 Glutathionylspermidine synthase preATP-grasp KQ254_02670 PF00355 Rieske [2Fe-2S] domain KQ254_02675 PF01979 Amidohydrolase family KQ254_02680 PF00156 Phosphoribosyl transferase domain KQ254_02690 PF13098 Thioredoxin-like domain KQ254_02690 PF10411 Disulfide bond isomerase protein N-terminus KQ254_02695 PF01545 Cation efflux family KQ254_02695 PF16916 Dimerisation domain of Zinc Transporter KQ254_02700 PF02583 Metal-sensitive transcriptional repressor KQ254_02705 PF01926 50S ribosome-binding GTPase KQ254_02705 PF12631 MnmE helical domain KQ254_02705 PF10396 GTP-binding protein TrmE N-terminus KQ254_02710 PF02096 60Kd inner membrane protein KQ254_02710 PF14849 YidC periplasmic domain KQ254_02715 PF01809 Putative membrane protein insertion efficiency factor KQ254_02720 PF00825 Ribonuclease P KQ254_02725 PF00468 Ribosomal protein L34 KQ254_02730 PF00308 Bacterial dnaA protein KQ254_02730 PF08299 Bacterial dnaA protein helix-turn-helix KQ254_02730 PF11638 DnaA N-terminal domain KQ254_02735 PF00712 DNA polymerase III beta subunit, N-terminal domain KQ254_02735 PF02767 DNA polymerase III beta subunit, central domain KQ254_02735 PF02768 DNA polymerase III beta subunit, C-terminal domain KQ254_02740 PF02463 RecF/RecN/SMC N terminal domain KQ254_02745 PF00204 DNA gyrase B KQ254_02745 PF00986 DNA gyrase B subunit, carboxyl terminus KQ254_02745 PF18053 DNA gyrase B subunit insert domain KQ254_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_02745 PF01751 Toprim domain KQ254_02765 PF09335 SNARE associated Golgi protein KQ254_02770 PF00005 ABC transporter KQ254_02770 PF12848 ABC transporter KQ254_02790 PF01521 Iron-sulphur cluster biosynthesis KQ254_02795 PF00561 alpha/beta hydrolase fold KQ254_02800 PF03702 Anhydro-N-acetylmuramic acid kinase KQ254_02805 PF00579 tRNA synthetases class I (W and Y) KQ254_02845 PF00209 Sodium:neurotransmitter symporter family KQ254_02855 PF01029 NusB family KQ254_02855 PF01189 16S rRNA methyltransferase RsmB/F KQ254_02860 PF02911 Formyl transferase, C-terminal domain KQ254_02860 PF00551 Formyl transferase KQ254_02865 PF00920 Dehydratase family KQ254_02880 PF03466 LysR substrate binding domain KQ254_02880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_02885 PF00860 Permease family KQ254_02890 PF00311 Phosphoenolpyruvate carboxylase KQ254_02900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ254_02905 PF00873 AcrB/AcrD/AcrF family KQ254_02915 PF00684 DnaJ central domain KQ254_02915 PF01556 DnaJ C terminal domain KQ254_02915 PF00226 DnaJ domain KQ254_02925 PF01113 Dihydrodipicolinate reductase, N-terminus KQ254_02925 PF05173 Dihydrodipicolinate reductase, C-terminus KQ254_02935 PF07690 Major Facilitator Superfamily KQ254_02940 PF00248 Aldo/keto reductase family KQ254_02945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_02945 PF03466 LysR substrate binding domain KQ254_02960 PF00155 Aminotransferase class I and II KQ254_02960 PF00392 Bacterial regulatory proteins, gntR family KQ254_02965 PF00107 Zinc-binding dehydrogenase KQ254_02965 PF08240 Alcohol dehydrogenase GroES-like domain KQ254_02970 PF03352 Methyladenine glycosylase KQ254_02985 PF14815 NUDIX domain KQ254_02985 PF00730 HhH-GPD superfamily base excision DNA repair protein KQ254_02985 PF00633 Helix-hairpin-helix motif KQ254_02985 PF10576 Iron-sulfur binding domain of endonuclease III KQ254_03000 PF07043 Protein of unknown function (DUF1328) KQ254_03005 PF03692 Putative zinc- or iron-chelating domain KQ254_03010 PF07995 Glucose / Sorbosone dehydrogenase KQ254_03015 PF16193 AAA C-terminal domain KQ254_03015 PF00004 ATPase family associated with various cellular activities (AAA) KQ254_03015 PF12002 MgsA AAA+ ATPase C terminal KQ254_03020 PF01226 Formate/nitrite transporter KQ254_03030 PF01259 SAICAR synthetase KQ254_03040 PF00701 Dihydrodipicolinate synthetase family KQ254_03045 PF00857 Isochorismatase family KQ254_03050 PF01758 Sodium Bile acid symporter family KQ254_03055 PF01554 MatE KQ254_03060 PF04463 Protein of unknown function (DUF523) KQ254_03065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ254_03075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ254_03080 PF14497 Glutathione S-transferase, C-terminal domain KQ254_03080 PF02798 Glutathione S-transferase, N-terminal domain KQ254_03090 PF00324 Amino acid permease KQ254_03100 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ254_03100 PF07683 Cobalamin synthesis protein cobW C-terminal domain KQ254_03110 PF07702 UTRA domain KQ254_03110 PF00392 Bacterial regulatory proteins, gntR family KQ254_03115 PF05962 HutD KQ254_03120 PF01175 Urocanase Rossmann-like domain KQ254_03120 PF17392 Urocanase C-terminal domain KQ254_03120 PF17391 Urocanase N-terminal domain KQ254_03125 PF00221 Aromatic amino acid lyase KQ254_03130 PF00324 Amino acid permease KQ254_03135 PF01979 Amidohydrolase family KQ254_03140 PF00491 Arginase family KQ254_03155 PF01177 Asp/Glu/Hydantoin racemase KQ254_03170 PF00583 Acetyltransferase (GNAT) family KQ254_03175 PF10706 Aminoglycoside-2''-adenylyltransferase KQ254_03180 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_03185 PF00186 Dihydrofolate reductase KQ254_03190 PF00583 Acetyltransferase (GNAT) family KQ254_03195 PF01909 Nucleotidyltransferase domain KQ254_03195 PF13427 Domain of unknown function (DUF4111) KQ254_03220 PF18623 TnsE C-terminal domain KQ254_03225 PF06527 TniQ KQ254_03225 PF15978 Tn7-like transposition protein D KQ254_03230 PF13401 AAA domain KQ254_03230 PF11426 Tn7 transposition regulator TnsC KQ254_03235 PF00665 Integrase core domain KQ254_03240 PF08722 TnsA endonuclease N terminal KQ254_03240 PF08721 TnsA endonuclease C terminal KQ254_03245 PF01380 SIS domain KQ254_03250 PF14602 Hexapeptide repeat of succinyl-transferase KQ254_03250 PF12804 MobA-like NTP transferase domain KQ254_03250 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_03255 PF04608 Phosphatidylglycerophosphatase A KQ254_03260 PF00586 AIR synthase related protein, N-terminal domain KQ254_03260 PF02769 AIR synthase related protein, C-terminal domain KQ254_03265 PF01029 NusB family KQ254_03270 PF00885 6,7-dimethyl-8-ribityllumazine synthase KQ254_03275 PF00925 GTP cyclohydrolase II KQ254_03275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KQ254_03300 PF02580 D-Tyr-tRNA(Tyr) deacylase KQ254_03305 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KQ254_03305 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KQ254_03310 PF00581 Rhodanese-like domain KQ254_03315 PF02666 Phosphatidylserine decarboxylase KQ254_03325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_03325 PF00512 His Kinase A (phospho-acceptor) domain KQ254_03325 PF00989 PAS fold KQ254_03325 PF11808 Phosphate regulon sensor protein PhoR KQ254_03330 PF00072 Response regulator receiver domain KQ254_03330 PF00486 Transcriptional regulatory protein, C terminal KQ254_03340 PF00106 short chain dehydrogenase KQ254_03345 PF01554 MatE KQ254_03350 PF00155 Aminotransferase class I and II KQ254_03355 PF04286 Protein of unknown function (DUF445) KQ254_03370 PF04262 Glutamate-cysteine ligase KQ254_03375 PF02600 Disulfide bond formation protein DsbB KQ254_03380 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KQ254_03380 PF04717 Type VI secretion system, phage-baseplate injector KQ254_03380 PF13296 Putative type VI secretion system Rhs element Vgr KQ254_03405 PF05728 Uncharacterised protein family (UPF0227) KQ254_03410 PF00204 DNA gyrase B KQ254_03410 PF00986 DNA gyrase B subunit, carboxyl terminus KQ254_03410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_03410 PF01751 Toprim domain KQ254_03415 PF00106 short chain dehydrogenase KQ254_03420 PF04115 Ureidoglycolate lyase KQ254_03425 PF03561 Allantoicase repeat KQ254_03430 PF01494 FAD binding domain KQ254_03440 PF00860 Permease family KQ254_03445 PF00576 HIUase/Transthyretin family KQ254_03475 PF11412 Disulphide bond corrector protein DsbC KQ254_03475 PF02683 Cytochrome C biogenesis protein transmembrane region KQ254_03480 PF00990 Diguanylate cyclase, GGDEF domain KQ254_03480 PF07694 5TMR of 5TMR-LYT KQ254_03485 PF07859 alpha/beta hydrolase fold KQ254_03495 PF03960 ArsC family KQ254_03500 PF03372 Endonuclease/Exonuclease/phosphatase family KQ254_03505 PF00156 Phosphoribosyl transferase domain KQ254_03510 PF07715 TonB-dependent Receptor Plug Domain KQ254_03510 PF00593 TonB dependent receptor KQ254_03520 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KQ254_03520 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KQ254_03525 PF04101 Glycosyltransferase family 28 C-terminal domain KQ254_03525 PF03033 Glycosyltransferase family 28 N-terminal domain KQ254_03530 PF01225 Mur ligase family, catalytic domain KQ254_03530 PF02875 Mur ligase family, glutamate ligase domain KQ254_03530 PF08245 Mur ligase middle domain KQ254_03535 PF07478 D-ala D-ala ligase C-terminus KQ254_03535 PF01820 D-ala D-ala ligase N-terminus KQ254_03540 PF03799 Cell division protein FtsQ KQ254_03540 PF08478 POTRA domain, FtsQ-type KQ254_03545 PF02491 SHS2 domain inserted in FTSA KQ254_03550 PF12327 FtsZ family, C-terminal domain KQ254_03550 PF00091 Tubulin/FtsZ family, GTPase domain KQ254_03555 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KQ254_03565 PF01551 Peptidase family M23 KQ254_03570 PF17831 Pyruvate dehydrogenase E1 component middle domain KQ254_03570 PF00456 Transketolase, thiamine diphosphate binding domain KQ254_03575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ254_03575 PF00364 Biotin-requiring enzyme KQ254_03575 PF02817 e3 binding domain KQ254_03585 PF01169 Uncharacterized protein family UPF0016 KQ254_03590 PF07715 TonB-dependent Receptor Plug Domain KQ254_03590 PF00593 TonB dependent receptor KQ254_03595 PF00258 Flavodoxin KQ254_03595 PF01613 Flavin reductase like domain KQ254_03600 PF03692 Putative zinc- or iron-chelating domain KQ254_03605 PF00571 CBS domain KQ254_03605 PF00478 IMP dehydrogenase / GMP reductase domain KQ254_03610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ254_03610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ254_03610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ254_03610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ254_03615 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KQ254_03615 PF01243 Pyridoxamine 5'-phosphate oxidase KQ254_03620 PF01368 DHH family KQ254_03620 PF02272 DHHA1 domain KQ254_03620 PF17768 RecJ OB domain KQ254_03640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ254_03645 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KQ254_03650 PF04452 RNA methyltransferase KQ254_03655 PF00924 Mechanosensitive ion channel KQ254_03665 PF16177 Acetyl-coenzyme A synthetase N-terminus KQ254_03665 PF00501 AMP-binding enzyme KQ254_03665 PF13193 AMP-binding enzyme C-terminal domain KQ254_03670 PF00857 Isochorismatase family KQ254_03675 PF01037 Lrp/AsnC ligand binding domain KQ254_03680 PF00296 Luciferase-like monooxygenase KQ254_03685 PF03358 NADPH-dependent FMN reductase KQ254_03690 PF00072 Response regulator receiver domain KQ254_03690 PF00196 Bacterial regulatory proteins, luxR family KQ254_03700 PF00072 Response regulator receiver domain KQ254_03700 PF01627 Hpt domain KQ254_03700 PF00512 His Kinase A (phospho-acceptor) domain KQ254_03700 PF00672 HAMP domain KQ254_03700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_03705 PF04341 Protein of unknown function, DUF485 KQ254_03710 PF00474 Sodium:solute symporter family KQ254_03720 PF02028 BCCT, betaine/carnitine/choline family transporter KQ254_03730 PF00990 Diguanylate cyclase, GGDEF domain KQ254_03735 PF17760 UvrA interaction domain KQ254_03735 PF17755 UvrA DNA-binding domain KQ254_03740 PF16925 Tetracyclin repressor-like, C-terminal domain KQ254_03740 PF00440 Bacterial regulatory proteins, tetR family KQ254_03745 PF08240 Alcohol dehydrogenase GroES-like domain KQ254_03745 PF00107 Zinc-binding dehydrogenase KQ254_03755 PF06942 GlpM protein KQ254_03760 PF03070 TENA/THI-4/PQQC family KQ254_03760 PF08543 Phosphomethylpyrimidine kinase KQ254_03760 PF02581 Thiamine monophosphate synthase KQ254_03770 PF07690 Major Facilitator Superfamily KQ254_03775 PF00436 Single-strand binding protein family KQ254_03785 PF03591 AzlC protein KQ254_03795 PF00324 Amino acid permease KQ254_03800 PF00155 Aminotransferase class I and II KQ254_03800 PF00392 Bacterial regulatory proteins, gntR family KQ254_03805 PF00202 Aminotransferase class-III KQ254_03810 PF00171 Aldehyde dehydrogenase family KQ254_03815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_03820 PF00857 Isochorismatase family KQ254_03825 PF05726 Pirin C-terminal cupin domain KQ254_03825 PF02678 Pirin KQ254_03830 PF01593 Flavin containing amine oxidoreductase KQ254_03850 PF07690 Major Facilitator Superfamily KQ254_03855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_03855 PF03466 LysR substrate binding domain KQ254_03875 PF00248 Aldo/keto reductase family KQ254_03880 PF02311 AraC-like ligand binding domain KQ254_03880 PF12833 Helix-turn-helix domain KQ254_03915 PF01638 HxlR-like helix-turn-helix KQ254_03920 PF02525 Flavodoxin-like fold KQ254_03945 PF02705 K+ potassium transporter KQ254_03970 PF00230 Major intrinsic protein KQ254_03985 PF00977 Histidine biosynthesis protein KQ254_03990 PF01636 Phosphotransferase enzyme family KQ254_04005 PF03992 Antibiotic biosynthesis monooxygenase KQ254_04020 PF00005 ABC transporter KQ254_04020 PF00664 ABC transporter transmembrane region KQ254_04025 PF00977 Histidine biosynthesis protein KQ254_04040 PF00117 Glutamine amidotransferase class-I KQ254_04045 PF00475 Imidazoleglycerol-phosphate dehydratase KQ254_04065 PF00583 Acetyltransferase (GNAT) family KQ254_04070 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KQ254_04070 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KQ254_04080 PF00672 HAMP domain KQ254_04080 PF00512 His Kinase A (phospho-acceptor) domain KQ254_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_04085 PF00072 Response regulator receiver domain KQ254_04085 PF00486 Transcriptional regulatory protein, C terminal KQ254_04090 PF17674 HHH domain KQ254_04090 PF00575 S1 RNA binding domain KQ254_04090 PF16921 Tex protein YqgF-like domain KQ254_04090 PF09371 Tex-like protein N-terminal domain KQ254_04095 PF00916 Sulfate permease family KQ254_04095 PF01740 STAS domain KQ254_04100 PF00106 short chain dehydrogenase KQ254_04105 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ254_04110 PF12848 ABC transporter KQ254_04110 PF00005 ABC transporter KQ254_04135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ254_04135 PF00529 HlyD membrane-fusion protein of T1SS KQ254_04140 PF00873 AcrB/AcrD/AcrF family KQ254_04145 PF01545 Cation efflux family KQ254_04175 PF00324 Amino acid permease KQ254_04190 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ254_04205 PF01795 MraW methylase family KQ254_04215 PF03717 Penicillin-binding Protein dimerisation domain KQ254_04215 PF00905 Penicillin binding protein transpeptidase domain KQ254_04220 PF01225 Mur ligase family, catalytic domain KQ254_04220 PF02875 Mur ligase family, glutamate ligase domain KQ254_04220 PF08245 Mur ligase middle domain KQ254_04225 PF02875 Mur ligase family, glutamate ligase domain KQ254_04225 PF08245 Mur ligase middle domain KQ254_04225 PF01225 Mur ligase family, catalytic domain KQ254_04230 PF00953 Glycosyl transferase family 4 KQ254_04240 PF13847 Methyltransferase domain KQ254_04245 PF17092 Penicillin-binding protein OB-like domain KQ254_04245 PF00912 Transglycosylase KQ254_04245 PF00905 Penicillin binding protein transpeptidase domain KQ254_04250 PF11104 Type IV pilus assembly protein PilM; KQ254_04255 PF05137 Fimbrial assembly protein (PilN) KQ254_04260 PF04350 Pilus assembly protein, PilO KQ254_04270 PF11741 AMIN domain KQ254_04270 PF00263 Bacterial type II and III secretion system protein KQ254_04270 PF03958 Bacterial type II/III secretion system short domain KQ254_04270 PF07660 Secretin and TonB N terminus short domain KQ254_04275 PF01202 Shikimate kinase KQ254_04280 PF01761 3-dehydroquinate synthase KQ254_04290 PF01645 Conserved region in glutamate synthase KQ254_04290 PF04898 Glutamate synthase central domain KQ254_04290 PF00310 Glutamine amidotransferases class-II KQ254_04290 PF01493 GXGXG motif KQ254_04295 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_04295 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KQ254_04305 PF04011 LemA family KQ254_04310 PF04536 TPM domain KQ254_04320 PF00114 Pilin (bacterial filament) KQ254_04320 PF07963 Prokaryotic N-terminal methylation motif KQ254_04330 PF15864 Protein glycosylation ligase KQ254_04330 PF04932 O-Antigen ligase KQ254_04330 PF11846 Virulence factor membrane-bound polymerase, C-terminal KQ254_04335 PF00210 Ferritin-like domain KQ254_04340 PF04324 BFD-like [2Fe-2S] binding domain KQ254_04345 PF01042 Endoribonuclease L-PSP KQ254_04350 PF02824 TGS domain KQ254_04350 PF04607 Region found in RelA / SpoT proteins KQ254_04350 PF13291 ACT domain KQ254_04360 PF01192 RNA polymerase Rpb6 KQ254_04365 PF00625 Guanylate kinase KQ254_04370 PF02401 LytB protein KQ254_04380 PF07963 Prokaryotic N-terminal methylation motif KQ254_04380 PF00114 Pilin (bacterial filament) KQ254_04415 PF00886 Ribosomal protein S16 KQ254_04420 PF01782 RimM N-terminal domain KQ254_04420 PF05239 PRC-barrel domain KQ254_04425 PF01746 tRNA (Guanine-1)-methyltransferase KQ254_04430 PF01245 Ribosomal protein L19 KQ254_04435 PF00561 alpha/beta hydrolase fold KQ254_04440 PF03280 Proteobacterial lipase chaperone protein KQ254_04445 PF09157 Pseudouridine synthase II TruB, C-terminal KQ254_04445 PF01509 TruB family pseudouridylate synthase (N terminal domain) KQ254_04445 PF16198 tRNA pseudouridylate synthase B C-terminal domain KQ254_04450 PF01925 Sulfite exporter TauE/SafE KQ254_04460 PF00892 EamA-like transporter family KQ254_04465 PF00892 EamA-like transporter family KQ254_04470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ254_04470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ254_04475 PF02913 FAD linked oxidases, C-terminal domain KQ254_04475 PF01565 FAD binding domain KQ254_04485 PF03992 Antibiotic biosynthesis monooxygenase KQ254_04490 PF02525 Flavodoxin-like fold KQ254_04500 PF07690 Major Facilitator Superfamily KQ254_04505 PF12805 FUSC-like inner membrane protein yccS KQ254_04510 PF00080 Copper/zinc superoxide dismutase (SODC) KQ254_04515 PF01594 AI-2E family transporter KQ254_04540 PF00149 Calcineurin-like phosphoesterase KQ254_04550 PF13936 Helix-turn-helix domain KQ254_04550 PF00665 Integrase core domain KQ254_04575 PF01734 Patatin-like phospholipase KQ254_04600 PF13614 AAA domain KQ254_04620 PF01209 ubiE/COQ5 methyltransferase family KQ254_04630 PF00324 Amino acid permease KQ254_04635 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KQ254_04635 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KQ254_04640 PF00202 Aminotransferase class-III KQ254_04645 PF04958 Arginine N-succinyltransferase beta subunit KQ254_04650 PF00171 Aldehyde dehydrogenase family KQ254_04655 PF04996 Succinylarginine dihydrolase KQ254_04660 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KQ254_04675 PF05922 Peptidase inhibitor I9 KQ254_04675 PF00082 Subtilase family KQ254_04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_04690 PF03466 LysR substrate binding domain KQ254_04695 PF00892 EamA-like transporter family KQ254_04710 PF05746 DALR anticodon binding domain KQ254_04710 PF02092 Glycyl-tRNA synthetase beta subunit KQ254_04715 PF02091 Glycyl-tRNA synthetase alpha subunit KQ254_04740 PF00571 CBS domain KQ254_04745 PF04024 PspC domain KQ254_04755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_04755 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ254_04755 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_04755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_04765 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KQ254_04765 PF01488 Shikimate / quinate 5-dehydrogenase KQ254_04765 PF08501 Shikimate dehydrogenase substrate binding domain KQ254_04770 PF01218 Coproporphyrinogen III oxidase KQ254_04775 PF00925 GTP cyclohydrolase II KQ254_04780 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KQ254_04780 PF02780 Transketolase, C-terminal domain KQ254_04780 PF02779 Transketolase, pyrimidine binding domain KQ254_04785 PF00459 Inositol monophosphatase family KQ254_04790 PF00271 Helicase conserved C-terminal domain KQ254_04790 PF12343 Cold shock protein DEAD box A KQ254_04790 PF00270 DEAD/DEAH box helicase KQ254_04790 PF03880 DbpA RNA binding domain KQ254_04800 PF00005 ABC transporter KQ254_04805 PF02405 Permease MlaE KQ254_04815 PF05494 MlaC protein KQ254_04825 PF01544 CorA-like Mg2+ transporter protein KQ254_04830 PF03641 Possible lysine decarboxylase KQ254_04835 PF00293 NUDIX domain KQ254_04840 PF00156 Phosphoribosyl transferase domain KQ254_04845 PF00270 DEAD/DEAH box helicase KQ254_04845 PF17191 RecG wedge domain KQ254_04845 PF00271 Helicase conserved C-terminal domain KQ254_04860 PF01553 Acyltransferase KQ254_04870 PF00375 Sodium:dicarboxylate symporter family KQ254_04880 PF01926 50S ribosome-binding GTPase KQ254_04885 PF02082 Transcriptional regulator KQ254_04890 PF00970 Oxidoreductase FAD-binding domain KQ254_04890 PF00042 Globin KQ254_04890 PF00175 Oxidoreductase NAD-binding domain KQ254_04900 PF05872 Bacterial protein of unknown function (DUF853) KQ254_04905 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ254_04910 PF00117 Glutamine amidotransferase class-I KQ254_04915 PF00338 Ribosomal protein S10p/S20e KQ254_04920 PF00297 Ribosomal protein L3 KQ254_04925 PF00573 Ribosomal protein L4/L1 family KQ254_04930 PF00276 Ribosomal protein L23 KQ254_04935 PF03947 Ribosomal Proteins L2, C-terminal domain KQ254_04935 PF00181 Ribosomal Proteins L2, RNA binding domain KQ254_04940 PF00203 Ribosomal protein S19 KQ254_04945 PF00237 Ribosomal protein L22p/L17e KQ254_04950 PF00189 Ribosomal protein S3, C-terminal domain KQ254_04950 PF07650 KH domain KQ254_04955 PF00252 Ribosomal protein L16p/L10e KQ254_04960 PF00831 Ribosomal L29 protein KQ254_04965 PF00366 Ribosomal protein S17 KQ254_04970 PF00238 Ribosomal protein L14p/L23e KQ254_04975 PF00467 KOW motif KQ254_04975 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KQ254_04980 PF00281 Ribosomal protein L5 KQ254_04980 PF00673 ribosomal L5P family C-terminus KQ254_04985 PF00253 Ribosomal protein S14p/S29e KQ254_04990 PF00410 Ribosomal protein S8 KQ254_04995 PF00347 Ribosomal protein L6 KQ254_05000 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KQ254_05005 PF03719 Ribosomal protein S5, C-terminal domain KQ254_05005 PF00333 Ribosomal protein S5, N-terminal domain KQ254_05010 PF00327 Ribosomal protein L30p/L7e KQ254_05015 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KQ254_05020 PF00344 SecY translocase KQ254_05025 PF00444 Ribosomal protein L36 KQ254_05030 PF00416 Ribosomal protein S13/S18 KQ254_05035 PF00411 Ribosomal protein S11 KQ254_05040 PF01479 S4 domain KQ254_05040 PF00163 Ribosomal protein S4/S9 N-terminal domain KQ254_05045 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KQ254_05045 PF01000 RNA polymerase Rpb3/RpoA insert domain KQ254_05045 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KQ254_05050 PF01196 Ribosomal protein L17 KQ254_05055 PF00743 Flavin-binding monooxygenase-like KQ254_05060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_05060 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_05060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_05065 PF03937 Flavinator of succinate dehydrogenase KQ254_05095 PF09526 Probable metal-binding protein (DUF2387) KQ254_05105 PF13610 DDE domain KQ254_05115 PF08461 Ribonuclease R winged-helix domain KQ254_05115 PF00575 S1 RNA binding domain KQ254_05115 PF00773 RNB domain KQ254_05115 PF08206 Ribonuclease B OB domain KQ254_05115 PF17876 Cold shock domain KQ254_05160 PF01557 Fumarylacetoacetate (FAA) hydrolase family KQ254_05165 PF12833 Helix-turn-helix domain KQ254_05175 PF03631 Virulence factor BrkB KQ254_05180 PF03358 NADPH-dependent FMN reductase KQ254_05205 PF02130 Uncharacterized protein family UPF0054 KQ254_05210 PF02562 PhoH-like protein KQ254_05215 PF01938 TRAM domain KQ254_05215 PF04055 Radical SAM superfamily KQ254_05215 PF00919 Uncharacterized protein family UPF0004 KQ254_05220 PF01551 Peptidase family M23 KQ254_05220 PF10145 Phage-related minor tail protein KQ254_05220 PF01464 Transglycosylase SLT domain KQ254_05230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KQ254_05230 PF00056 lactate/malate dehydrogenase, NAD binding domain KQ254_05250 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KQ254_05255 PF01066 CDP-alcohol phosphatidyltransferase KQ254_05300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_05300 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_05300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_05305 PF17932 Tetracyclin repressor-like, C-terminal domain KQ254_05305 PF00440 Bacterial regulatory proteins, tetR family KQ254_05320 PF01039 Carboxyl transferase domain KQ254_05325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_05325 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_05325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_05335 PF02785 Biotin carboxylase C-terminal domain KQ254_05335 PF00289 Biotin carboxylase, N-terminal domain KQ254_05335 PF00364 Biotin-requiring enzyme KQ254_05335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ254_05345 PF04386 Stringent starvation protein B KQ254_05350 PF13417 Glutathione S-transferase, N-terminal domain KQ254_05350 PF00043 Glutathione S-transferase, C-terminal domain KQ254_05355 PF00380 Ribosomal protein S9/S16 KQ254_05360 PF00572 Ribosomal protein L13 KQ254_05365 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KQ254_05370 PF00398 Ribosomal RNA adenine dimethylase KQ254_05375 PF00149 Calcineurin-like phosphoesterase KQ254_05395 PF13167 GTP-binding GTPase N-terminal KQ254_05395 PF01926 50S ribosome-binding GTPase KQ254_05395 PF16360 GTP-binding GTPase Middle Region KQ254_05405 PF13091 PLD-like domain KQ254_05410 PF00149 Calcineurin-like phosphoesterase KQ254_05410 PF10518 TAT (twin-arginine translocation) pathway signal sequence KQ254_05415 PF01389 OmpA-like transmembrane domain KQ254_05415 PF00691 OmpA family KQ254_05420 PF17152 Periplasmic sensor domain KQ254_05420 PF00990 Diguanylate cyclase, GGDEF domain KQ254_05455 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_05455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ254_05465 PF04273 Putative phosphatase (DUF442) KQ254_05465 PF00753 Metallo-beta-lactamase superfamily KQ254_05470 PF00561 alpha/beta hydrolase fold KQ254_05475 PF00085 Thioredoxin KQ254_05480 PF03061 Thioesterase superfamily KQ254_05490 PF04461 Protein of unknown function (DUF520) KQ254_05500 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KQ254_05500 PF01266 FAD dependent oxidoreductase KQ254_05510 PF03795 YCII-related domain KQ254_05515 PF04279 Intracellular septation protein A KQ254_05520 PF02811 PHP domain KQ254_05525 PF01062 Bestrophin, RFP-TM, chloride channel KQ254_05530 PF04002 RadC-like JAB domain KQ254_05535 PF04127 DNA / pantothenate metabolism flavoprotein KQ254_05535 PF02441 Flavoprotein KQ254_05540 PF07549 SecD/SecF GG Motif KQ254_05540 PF02355 Protein export membrane protein KQ254_05545 PF02355 Protein export membrane protein KQ254_05545 PF13721 SecD export protein N-terminal TM region KQ254_05545 PF07549 SecD/SecF GG Motif KQ254_05550 PF02699 Preprotein translocase subunit KQ254_05555 PF01702 Queuine tRNA-ribosyltransferase KQ254_05570 PF02547 Queuosine biosynthesis protein KQ254_05580 PF00589 Phage integrase family KQ254_05580 PF13356 Arm DNA-binding domain KQ254_05600 PF13936 Helix-turn-helix domain KQ254_05600 PF00665 Integrase core domain KQ254_05610 PF02384 N-6 DNA Methylase KQ254_05630 PF11867 Domain of unknown function (DUF3387) KQ254_05630 PF18766 SWI2/SNF2 ATPase KQ254_05630 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KQ254_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_05640 PF00512 His Kinase A (phospho-acceptor) domain KQ254_05640 PF07689 KaiB domain KQ254_05645 PF08335 GlnD PII-uridylyltransferase KQ254_05645 PF03710 Glutamate-ammonia ligase adenylyltransferase KQ254_05650 PF01063 Amino-transferase class IV KQ254_05665 PF01522 Polysaccharide deacetylase KQ254_05670 PF00535 Glycosyl transferase family 2 KQ254_05675 PF13439 Glycosyltransferase Family 4 KQ254_05675 PF00534 Glycosyl transferases group 1 KQ254_05705 PF02938 GAD domain KQ254_05705 PF00152 tRNA synthetases class II (D, K and N) KQ254_05705 PF01336 OB-fold nucleic acid binding domain KQ254_05715 PF00593 TonB dependent receptor KQ254_05715 PF07715 TonB-dependent Receptor Plug Domain KQ254_05735 PF06146 Phosphate-starvation-inducible E KQ254_05740 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ254_05740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_05740 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_05740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_05745 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_05745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_05745 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ254_05745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_05755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_05755 PF00512 His Kinase A (phospho-acceptor) domain KQ254_05755 PF00672 HAMP domain KQ254_05760 PF00486 Transcriptional regulatory protein, C terminal KQ254_05760 PF00072 Response regulator receiver domain KQ254_05765 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KQ254_05780 PF03009 Glycerophosphoryl diester phosphodiesterase family KQ254_05785 PF01923 Cobalamin adenosyltransferase KQ254_05790 PF00593 TonB dependent receptor KQ254_05790 PF07715 TonB-dependent Receptor Plug Domain KQ254_05795 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KQ254_05800 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_05825 PF00290 Tryptophan synthase alpha chain KQ254_05830 PF01039 Carboxyl transferase domain KQ254_05835 PF08245 Mur ligase middle domain KQ254_05835 PF02875 Mur ligase family, glutamate ligase domain KQ254_05850 PF00753 Metallo-beta-lactamase superfamily KQ254_05855 PF10417 C-terminal domain of 1-Cys peroxiredoxin KQ254_05855 PF00578 AhpC/TSA family KQ254_05865 PF07516 SecA Wing and Scaffold domain KQ254_05865 PF01043 SecA preprotein cross-linking domain KQ254_05865 PF02810 SEC-C motif KQ254_05865 PF07517 SecA DEAD-like domain KQ254_05875 PF00083 Sugar (and other) transporter KQ254_05875 PF07690 Major Facilitator Superfamily KQ254_05880 PF03006 Haemolysin-III related KQ254_05885 PF13610 DDE domain KQ254_05910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ254_05910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ254_05910 PF00378 Enoyl-CoA hydratase/isomerase KQ254_05915 PF02803 Thiolase, C-terminal domain KQ254_05915 PF00108 Thiolase, N-terminal domain KQ254_05920 PF12833 Helix-turn-helix domain KQ254_05920 PF02311 AraC-like ligand binding domain KQ254_05925 PF02515 CoA-transferase family III KQ254_05930 PF04966 Carbohydrate-selective porin, OprB family KQ254_05935 PF01011 PQQ enzyme repeat KQ254_05940 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ254_05940 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ254_05950 PF00893 Small Multidrug Resistance protein KQ254_05960 PF02803 Thiolase, C-terminal domain KQ254_05960 PF00108 Thiolase, N-terminal domain KQ254_05970 PF00691 OmpA family KQ254_05970 PF13505 Outer membrane protein beta-barrel domain KQ254_05995 PF00583 Acetyltransferase (GNAT) family KQ254_06000 PF10706 Aminoglycoside-2''-adenylyltransferase KQ254_06005 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_06010 PF00186 Dihydrofolate reductase KQ254_06015 PF00583 Acetyltransferase (GNAT) family KQ254_06020 PF01909 Nucleotidyltransferase domain KQ254_06020 PF13427 Domain of unknown function (DUF4111) KQ254_06045 PF18623 TnsE C-terminal domain KQ254_06050 PF06527 TniQ KQ254_06050 PF15978 Tn7-like transposition protein D KQ254_06055 PF13401 AAA domain KQ254_06055 PF11426 Tn7 transposition regulator TnsC KQ254_06060 PF00665 Integrase core domain KQ254_06065 PF08721 TnsA endonuclease C terminal KQ254_06065 PF08722 TnsA endonuclease N terminal KQ254_06075 PF00324 Amino acid permease KQ254_06080 PF08468 Methyltransferase small domain N-terminal KQ254_06080 PF05175 Methyltransferase small domain KQ254_06085 PF00860 Permease family KQ254_06090 PF03144 Elongation factor Tu domain 2 KQ254_06090 PF00009 Elongation factor Tu GTP binding domain KQ254_06090 PF00679 Elongation factor G C-terminus KQ254_06095 PF01741 Large-conductance mechanosensitive channel, MscL KQ254_06110 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KQ254_06110 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KQ254_06110 PF06827 Zinc finger found in FPG and IleRS KQ254_06115 PF02245 Methylpurine-DNA glycosylase (MPG) KQ254_06120 PF07715 TonB-dependent Receptor Plug Domain KQ254_06120 PF00593 TonB dependent receptor KQ254_06125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ254_06140 PF13098 Thioredoxin-like domain KQ254_06140 PF10411 Disulfide bond isomerase protein N-terminus KQ254_06145 PF01571 Aminomethyltransferase folate-binding domain KQ254_06160 PF04343 Protein of unknown function, DUF488 KQ254_06165 PF03831 PhnA domain KQ254_06165 PF08274 PhnA Zinc-Ribbon KQ254_06170 PF07411 Domain of unknown function (DUF1508) KQ254_06175 PF03129 Anticodon binding domain KQ254_06175 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ254_06175 PF04073 Aminoacyl-tRNA editing domain KQ254_06180 PF00873 AcrB/AcrD/AcrF family KQ254_06195 PF00072 Response regulator receiver domain KQ254_06200 PF00072 Response regulator receiver domain KQ254_06205 PF01584 CheW-like domain KQ254_06210 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KQ254_06210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KQ254_06215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_06215 PF01627 Hpt domain KQ254_06215 PF00072 Response regulator receiver domain KQ254_06215 PF01584 CheW-like domain KQ254_06225 PF07687 Peptidase dimerisation domain KQ254_06225 PF01546 Peptidase family M20/M25/M40 KQ254_06230 PF08085 Entericidin EcnA/B family KQ254_06240 PF04304 Protein of unknown function (DUF454) KQ254_06245 PF17969 L,D-transpeptidase C-terminal domain KQ254_06245 PF03734 L,D-transpeptidase catalytic domain KQ254_06285 PF00175 Oxidoreductase NAD-binding domain KQ254_06285 PF00667 FAD binding domain KQ254_06285 PF00258 Flavodoxin KQ254_06295 PF12805 FUSC-like inner membrane protein yccS KQ254_06300 PF07690 Major Facilitator Superfamily KQ254_06305 PF00881 Nitroreductase family KQ254_06320 PF01235 Sodium:alanine symporter family KQ254_06325 PF01734 Patatin-like phospholipase KQ254_06330 PF13291 ACT domain KQ254_06330 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_06335 PF05992 SbmA/BacA-like family KQ254_06340 PF01431 Peptidase family M13 KQ254_06340 PF05649 Peptidase family M13 KQ254_06365 PF13936 Helix-turn-helix domain KQ254_06365 PF00665 Integrase core domain KQ254_06380 PF02637 GatB domain KQ254_06380 PF02934 GatB/GatE catalytic domain KQ254_06385 PF01425 Amidase KQ254_06390 PF02686 Glu-tRNAGln amidotransferase C subunit KQ254_06400 PF04085 rod shape-determining protein MreC KQ254_06405 PF04093 rod shape-determining protein MreD KQ254_06410 PF02545 Maf-like protein KQ254_06415 PF10150 Ribonuclease E/G family KQ254_06415 PF00575 S1 RNA binding domain KQ254_06425 PF06974 Protein of unknown function (DUF1298) KQ254_06425 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KQ254_06430 PF01507 Phosphoadenosine phosphosulfate reductase family KQ254_06445 PF02525 Flavodoxin-like fold KQ254_06465 PF02673 Bacitracin resistance protein BacA KQ254_06470 PF06719 AraC-type transcriptional regulator N-terminus KQ254_06470 PF12833 Helix-turn-helix domain KQ254_06475 PF14765 Polyketide synthase dehydratase KQ254_06475 PF00550 Phosphopantetheine attachment site KQ254_06475 PF08659 KR domain KQ254_06475 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ254_06475 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ254_06475 PF16197 Ketoacyl-synthetase C-terminal extension KQ254_06475 PF09277 Erythronolide synthase, docking KQ254_06475 PF08990 Erythronolide synthase docking KQ254_06475 PF08240 Alcohol dehydrogenase GroES-like domain KQ254_06475 PF00698 Acyl transferase domain KQ254_06480 PF01965 DJ-1/PfpI family KQ254_06520 PF00324 Amino acid permease KQ254_06525 PF04303 PrpF protein KQ254_06530 PF00348 Polyprenyl synthetase KQ254_06535 PF04237 YjbR KQ254_06540 PF01145 SPFH domain / Band 7 family KQ254_06550 PF01734 Patatin-like phospholipase KQ254_06570 PF08019 Phosphoethanolamine transferase EptA/EptB KQ254_06570 PF00884 Sulfatase KQ254_06575 PF00072 Response regulator receiver domain KQ254_06575 PF00486 Transcriptional regulatory protein, C terminal KQ254_06580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_06580 PF08521 Two-component sensor kinase N-terminal KQ254_06580 PF00512 His Kinase A (phospho-acceptor) domain KQ254_06590 PF00909 Ammonium Transporter Family KQ254_06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_06595 PF03466 LysR substrate binding domain KQ254_06615 PF08264 Anticodon-binding domain of tRNA KQ254_06615 PF00133 tRNA synthetases class I (I, L, M and V) KQ254_06615 PF10458 Valyl tRNA synthetase tRNA binding arm KQ254_06635 PF01906 Putative heavy-metal-binding KQ254_06640 PF01906 Putative heavy-metal-binding KQ254_06645 PF02321 Outer membrane efflux protein KQ254_06650 PF00873 AcrB/AcrD/AcrF family KQ254_06655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ254_06655 PF00529 HlyD membrane-fusion protein of T1SS KQ254_06660 PF01569 PAP2 superfamily KQ254_06670 PF00348 Polyprenyl synthetase KQ254_06680 PF00829 Ribosomal prokaryotic L21 protein KQ254_06685 PF01016 Ribosomal L27 protein KQ254_06690 PF03548 Outer membrane lipoprotein carrier protein LolA KQ254_06700 PF02403 Seryl-tRNA synthetase N-terminal domain KQ254_06700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ254_06705 PF10414 Sirohaem synthase dimerisation region KQ254_06705 PF14824 Sirohaem biosynthesis protein central KQ254_06705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KQ254_06710 PF00588 SpoU rRNA Methylase family KQ254_06715 PF01638 HxlR-like helix-turn-helix KQ254_06720 PF03358 NADPH-dependent FMN reductase KQ254_06725 PF13520 Amino acid permease KQ254_06730 PF00465 Iron-containing alcohol dehydrogenase KQ254_06740 PF03099 Biotin/lipoate A/B protein ligase family KQ254_06745 PF04359 Protein of unknown function (DUF493) KQ254_06750 PF04539 Sigma-70 region 3 KQ254_06750 PF04545 Sigma-70, region 4 KQ254_06750 PF00140 Sigma-70 factor, region 1.2 KQ254_06750 PF03979 Sigma-70 factor, region 1.1 KQ254_06750 PF04542 Sigma-70 region 2 KQ254_06750 PF04546 Sigma-70, non-essential region KQ254_06765 PF17773 UPF0176 acylphosphatase like domain KQ254_06765 PF00581 Rhodanese-like domain KQ254_06775 PF00285 Citrate synthase, C-terminal domain KQ254_06780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KQ254_06785 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KQ254_06790 PF00890 FAD binding domain KQ254_06790 PF02910 Fumarate reductase flavoprotein C-term KQ254_06795 PF13085 2Fe-2S iron-sulfur cluster binding domain KQ254_06810 PF16078 2-oxoglutarate dehydrogenase N-terminus KQ254_06810 PF00676 Dehydrogenase E1 component KQ254_06810 PF16870 2-oxoglutarate dehydrogenase C-terminal KQ254_06810 PF02779 Transketolase, pyrimidine binding domain KQ254_06815 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ254_06815 PF00364 Biotin-requiring enzyme KQ254_06815 PF02817 e3 binding domain KQ254_06820 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_06820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ254_06825 PF00549 CoA-ligase KQ254_06825 PF08442 ATP-grasp domain KQ254_06830 PF02629 CoA binding domain KQ254_06830 PF00549 CoA-ligase KQ254_06835 PF00579 tRNA synthetases class I (W and Y) KQ254_06840 PF05661 Protein of unknown function (DUF808) KQ254_06845 PF04228 Putative neutral zinc metallopeptidase KQ254_06850 PF00999 Sodium/hydrogen exchanger family KQ254_06865 PF09587 Bacterial capsule synthesis protein PGA_cap KQ254_06875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ254_06880 PF00582 Universal stress protein family KQ254_06885 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_06890 PF01042 Endoribonuclease L-PSP KQ254_06895 PF00440 Bacterial regulatory proteins, tetR family KQ254_06900 PF01272 Transcription elongation factor, GreA/GreB, C-term KQ254_06900 PF03449 Transcription elongation factor, N-terminal KQ254_06905 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KQ254_06905 PF02142 MGS-like domain KQ254_06905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ254_06910 PF00117 Glutamine amidotransferase class-I KQ254_06910 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KQ254_06925 PF01985 CRS1 / YhbY (CRM) domain KQ254_06930 PF01728 FtsJ-like methyltransferase KQ254_06935 PF17862 AAA+ lid domain KQ254_06935 PF06480 FtsH Extracellular KQ254_06935 PF01434 Peptidase family M41 KQ254_06935 PF00004 ATPase family associated with various cellular activities (AAA) KQ254_06940 PF00809 Pterin binding enzyme KQ254_06960 PF09423 PhoD-like phosphatase KQ254_06960 PF16655 PhoD-like phosphatase, N-terminal domain KQ254_06975 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KQ254_06975 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KQ254_06990 PF00083 Sugar (and other) transporter KQ254_06995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KQ254_06995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KQ254_07000 PF01266 FAD dependent oxidoreductase KQ254_07000 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KQ254_07005 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KQ254_07005 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KQ254_07010 PF00781 Diacylglycerol kinase catalytic domain KQ254_07015 PF00149 Calcineurin-like phosphoesterase KQ254_07020 PF00166 Chaperonin 10 Kd subunit KQ254_07025 PF00118 TCP-1/cpn60 chaperonin family KQ254_07030 PF01219 Prokaryotic diacylglycerol kinase KQ254_07035 PF00753 Metallo-beta-lactamase superfamily KQ254_07040 PF03009 Glycerophosphoryl diester phosphodiesterase family KQ254_07045 PF00873 AcrB/AcrD/AcrF family KQ254_07055 PF01435 Peptidase family M48 KQ254_07060 PF01464 Transglycosylase SLT domain KQ254_07065 PF01171 PP-loop family KQ254_07075 PF01464 Transglycosylase SLT domain KQ254_07075 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ254_07080 PF01272 Transcription elongation factor, GreA/GreB, C-term KQ254_07080 PF03449 Transcription elongation factor, N-terminal KQ254_07095 PF00501 AMP-binding enzyme KQ254_07095 PF00975 Thioesterase domain KQ254_07095 PF00550 Phosphopantetheine attachment site KQ254_07095 PF00668 Condensation domain KQ254_07095 PF13193 AMP-binding enzyme C-terminal domain KQ254_07120 PF09857 Putative toxin of bacterial toxin-antitoxin pair KQ254_07140 PF00881 Nitroreductase family KQ254_07155 PF02595 Glycerate kinase family KQ254_07160 PF00384 Molybdopterin oxidoreductase KQ254_07165 PF02634 FdhD/NarQ family KQ254_07170 PF06803 Protein of unknown function (DUF1232) KQ254_07175 PF11890 Domain of unknown function (DUF3410) KQ254_07175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ254_07175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ254_07180 PF00152 tRNA synthetases class II (D, K and N) KQ254_07190 PF18073 Rubredoxin metal binding domain KQ254_07195 PF00324 Amino acid permease KQ254_07205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KQ254_07205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KQ254_07210 PF01678 Diaminopimelate epimerase KQ254_07215 PF01810 LysE type translocator KQ254_07220 PF00589 Phage integrase family KQ254_07220 PF02899 Phage integrase, N-terminal SAM-like domain KQ254_07225 PF01012 Electron transfer flavoprotein domain KQ254_07230 PF00766 Electron transfer flavoprotein FAD-binding domain KQ254_07230 PF01012 Electron transfer flavoprotein domain KQ254_07235 PF03989 DNA gyrase C-terminal domain, beta-propeller KQ254_07235 PF00521 DNA gyrase/topoisomerase IV, subunit A KQ254_07250 PF00535 Glycosyl transferase family 2 KQ254_07270 PF13533 Biotin-lipoyl like KQ254_07280 PF00266 Aminotransferase class-V KQ254_07290 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KQ254_07300 PF02687 FtsX-like permease family KQ254_07300 PF12704 MacB-like periplasmic core domain KQ254_07305 PF00005 ABC transporter KQ254_07310 PF03772 Competence protein KQ254_07310 PF13567 Domain of unknown function (DUF4131) KQ254_07310 PF00753 Metallo-beta-lactamase superfamily KQ254_07320 PF06965 Na+/H+ antiporter 1 KQ254_07320 PF01343 Peptidase family S49 KQ254_07325 PF12697 Alpha/beta hydrolase family KQ254_07330 PF00551 Formyl transferase KQ254_07335 PF00586 AIR synthase related protein, N-terminal domain KQ254_07335 PF02769 AIR synthase related protein, C-terminal domain KQ254_07340 PF01594 AI-2E family transporter KQ254_07345 PF11638 DnaA N-terminal domain KQ254_07345 PF08299 Bacterial dnaA protein helix-turn-helix KQ254_07345 PF00308 Bacterial dnaA protein KQ254_07360 PF00665 Integrase core domain KQ254_07360 PF13936 Helix-turn-helix domain KQ254_07385 PF00588 SpoU rRNA Methylase family KQ254_07385 PF08032 RNA 2'-O ribose methyltransferase substrate binding KQ254_07390 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KQ254_07400 PF00691 OmpA family KQ254_07405 PF07676 WD40-like Beta Propeller Repeat KQ254_07405 PF04052 TolB amino-terminal domain KQ254_07415 PF02472 Biopolymer transport protein ExbD/TolR KQ254_07420 PF01618 MotA/TolQ/ExbB proton channel family KQ254_07425 PF03061 Thioesterase superfamily KQ254_07430 PF01546 Peptidase family M20/M25/M40 KQ254_07430 PF07687 Peptidase dimerisation domain KQ254_07435 PF17864 RuvB AAA lid domain KQ254_07435 PF05491 RuvB C-terminal winged helix domain KQ254_07435 PF05496 Holliday junction DNA helicase RuvB P-loop domain KQ254_07440 PF07499 RuvA, C-terminal domain KQ254_07440 PF01330 RuvA N terminal domain KQ254_07445 PF01966 HD domain KQ254_07450 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KQ254_07450 PF02769 AIR synthase related protein, C-terminal domain KQ254_07450 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KQ254_07455 PF07690 Major Facilitator Superfamily KQ254_07460 PF01784 NIF3 (NGG1p interacting factor 3) KQ254_07465 PF00378 Enoyl-CoA hydratase/isomerase KQ254_07470 PF01467 Cytidylyltransferase-like KQ254_07470 PF00293 NUDIX domain KQ254_07480 PF00578 AhpC/TSA family KQ254_07495 PF06508 Queuosine biosynthesis protein QueC KQ254_07505 PF14602 Hexapeptide repeat of succinyl-transferase KQ254_07505 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_07505 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KQ254_07515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_07515 PF03466 LysR substrate binding domain KQ254_07520 PF12857 TOBE-like domain KQ254_07520 PF00005 ABC transporter KQ254_07525 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_07530 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_07545 PF01063 Amino-transferase class IV KQ254_07550 PF02618 YceG-like family KQ254_07555 PF02223 Thymidylate kinase KQ254_07565 PF02910 Fumarate reductase flavoprotein C-term KQ254_07565 PF00890 FAD binding domain KQ254_07570 PF13180 PDZ domain KQ254_07580 PF00679 Elongation factor G C-terminus KQ254_07580 PF06421 GTP-binding protein LepA C-terminus KQ254_07580 PF00009 Elongation factor Tu GTP binding domain KQ254_07580 PF03144 Elongation factor Tu domain 2 KQ254_07585 PF10502 Signal peptidase, peptidase S26 KQ254_07595 PF00035 Double-stranded RNA binding motif KQ254_07595 PF14622 Ribonuclease-III-like KQ254_07600 PF01926 50S ribosome-binding GTPase KQ254_07600 PF07650 KH domain KQ254_07610 PF11967 Recombination protein O N terminal KQ254_07610 PF02565 Recombination protein O C terminal KQ254_07615 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KQ254_07625 PF00106 short chain dehydrogenase KQ254_07655 PF00155 Aminotransferase class I and II KQ254_07665 PF17151 Periplasmic sensor domain KQ254_07665 PF00990 Diguanylate cyclase, GGDEF domain KQ254_07675 PF00271 Helicase conserved C-terminal domain KQ254_07675 PF04851 Type III restriction enzyme, res subunit KQ254_07675 PF02151 UvrB/uvrC motif KQ254_07675 PF12344 Ultra-violet resistance protein B KQ254_07675 PF17757 UvrB interaction domain KQ254_07685 PF00892 EamA-like transporter family KQ254_07690 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KQ254_07690 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KQ254_07705 PF01926 50S ribosome-binding GTPase KQ254_07705 PF01018 GTP1/OBG KQ254_07710 PF01472 PUA domain KQ254_07710 PF00696 Amino acid kinase family KQ254_07720 PF07759 Protein of unknown function (DUF1615) KQ254_07725 PF01207 Dihydrouridine synthase (Dus) KQ254_07730 PF03060 Nitronate monooxygenase KQ254_07745 PF02350 UDP-N-acetylglucosamine 2-epimerase KQ254_07775 PF00875 DNA photolyase KQ254_07775 PF03441 FAD binding domain of DNA photolyase KQ254_07780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ254_07785 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_07800 PF03971 Monomeric isocitrate dehydrogenase KQ254_07805 PF00849 RNA pseudouridylate synthase KQ254_07810 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ254_07830 PF06779 Uncharacterised MFS-type transporter YbfB KQ254_07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_07835 PF03466 LysR substrate binding domain KQ254_07840 PF00375 Sodium:dicarboxylate symporter family KQ254_07845 PF02567 Phenazine biosynthesis-like protein KQ254_07850 PF00675 Insulinase (Peptidase family M16) KQ254_07850 PF05193 Peptidase M16 inactive domain KQ254_07875 PF02581 Thiamine monophosphate synthase KQ254_07880 PF00202 Aminotransferase class-III KQ254_07890 PF00849 RNA pseudouridylate synthase KQ254_07895 PF18337 RapA N-terminal Tudor like domain KQ254_07895 PF00271 Helicase conserved C-terminal domain KQ254_07895 PF12137 RNA polymerase recycling family C-terminal KQ254_07895 PF00176 SNF2 family N-terminal domain KQ254_07895 PF18339 RapA N-terminal Tudor like domain 1 KQ254_07905 PF00440 Bacterial regulatory proteins, tetR family KQ254_07910 PF00175 Oxidoreductase NAD-binding domain KQ254_07910 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_07910 PF00970 Oxidoreductase FAD-binding domain KQ254_07915 PF00487 Fatty acid desaturase KQ254_07920 PF02525 Flavodoxin-like fold KQ254_07935 PF00202 Aminotransferase class-III KQ254_07940 PF00282 Pyridoxal-dependent decarboxylase conserved domain KQ254_07945 PF00171 Aldehyde dehydrogenase family KQ254_07950 PF01037 Lrp/AsnC ligand binding domain KQ254_07955 PF00205 Thiamine pyrophosphate enzyme, central domain KQ254_07955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ254_07955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ254_07960 PF00324 Amino acid permease KQ254_07965 PF12849 PBP superfamily domain KQ254_07970 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_07975 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_07980 PF00005 ABC transporter KQ254_07985 PF08496 Peptidase family S49 N-terminal KQ254_07985 PF01343 Peptidase family S49 KQ254_08000 PF00206 Lyase KQ254_08000 PF08328 Adenylosuccinate lyase C-terminal KQ254_08005 PF04356 Protein of unknown function (DUF489) KQ254_08015 PF13344 Haloacid dehalogenase-like hydrolase KQ254_08015 PF00293 NUDIX domain KQ254_08020 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_08025 PF07943 Penicillin-binding protein 5, C-terminal domain KQ254_08025 PF00768 D-alanyl-D-alanine carboxypeptidase KQ254_08040 PF01975 Survival protein SurE KQ254_08045 PF01551 Peptidase family M23 KQ254_08045 PF01476 LysM domain KQ254_08050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_08050 PF03466 LysR substrate binding domain KQ254_08055 PF13654 AAA domain KQ254_08055 PF05362 Lon protease (S16) C-terminal proteolytic domain KQ254_08060 PF07690 Major Facilitator Superfamily KQ254_08065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ254_08070 PF13593 SBF-like CPA transporter family (DUF4137) KQ254_08075 PF01197 Ribosomal protein L31 KQ254_08080 PF12792 CSS motif domain associated with EAL KQ254_08080 PF00563 EAL domain KQ254_08090 PF04055 Radical SAM superfamily KQ254_08095 PF08207 Elongation factor P (EF-P) KOW-like domain KQ254_08095 PF09285 Elongation factor P, C-terminal KQ254_08095 PF01132 Elongation factor P (EF-P) OB domain KQ254_08100 PF02554 Carbon starvation protein CstA KQ254_08100 PF13722 5TM C-terminal transporter carbon starvation CstA KQ254_08105 PF04328 Selenoprotein, putative KQ254_08115 PF00589 Phage integrase family KQ254_08115 PF13356 Arm DNA-binding domain KQ254_08150 PF00239 Resolvase, N terminal domain KQ254_08150 PF02796 Helix-turn-helix domain of resolvase KQ254_08200 PF17954 Quercetinase C-terminal cupin domain KQ254_08200 PF02678 Pirin KQ254_08205 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_08210 PF13309 HTH domain KQ254_08210 PF08348 YheO-like PAS domain KQ254_08220 PF13193 AMP-binding enzyme C-terminal domain KQ254_08220 PF00501 AMP-binding enzyme KQ254_08220 PF00668 Condensation domain KQ254_08225 PF00975 Thioesterase domain KQ254_08225 PF00668 Condensation domain KQ254_08225 PF00501 AMP-binding enzyme KQ254_08225 PF13193 AMP-binding enzyme C-terminal domain KQ254_08225 PF00550 Phosphopantetheine attachment site KQ254_08230 PF01032 FecCD transport family KQ254_08235 PF01032 FecCD transport family KQ254_08240 PF00005 ABC transporter KQ254_08245 PF01497 Periplasmic binding protein KQ254_08250 PF00593 TonB dependent receptor KQ254_08250 PF07715 TonB-dependent Receptor Plug Domain KQ254_08255 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KQ254_08260 PF00501 AMP-binding enzyme KQ254_08260 PF00668 Condensation domain KQ254_08260 PF00550 Phosphopantetheine attachment site KQ254_08265 PF00501 AMP-binding enzyme KQ254_08265 PF13193 AMP-binding enzyme C-terminal domain KQ254_08270 PF00857 Isochorismatase family KQ254_08270 PF00550 Phosphopantetheine attachment site KQ254_08275 PF00282 Pyridoxal-dependent decarboxylase conserved domain KQ254_08285 PF00664 ABC transporter transmembrane region KQ254_08285 PF00005 ABC transporter KQ254_08290 PF00005 ABC transporter KQ254_08295 PF00975 Thioesterase domain KQ254_08300 PF17837 4'-phosphopantetheinyl transferase N-terminal domain KQ254_08300 PF01648 4'-phosphopantetheinyl transferase superfamily KQ254_08305 PF00425 chorismate binding enzyme KQ254_08315 PF01208 Uroporphyrinogen decarboxylase (URO-D) KQ254_08320 PF05675 Protein of unknown function (DUF817) KQ254_08340 PF13610 DDE domain KQ254_08355 PF01227 GTP cyclohydrolase I KQ254_08360 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_08360 PF01799 [2Fe-2S] binding domain KQ254_08365 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KQ254_08365 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KQ254_08380 PF00218 Indole-3-glycerol phosphate synthase KQ254_08385 PF00591 Glycosyl transferase family, a/b domain KQ254_08385 PF02885 Glycosyl transferase family, helical bundle domain KQ254_08390 PF00593 TonB dependent receptor KQ254_08390 PF07715 TonB-dependent Receptor Plug Domain KQ254_08395 PF11838 ERAP1-like C-terminal domain KQ254_08395 PF01433 Peptidase family M1 domain KQ254_08400 PF00117 Glutamine amidotransferase class-I KQ254_08415 PF13539 D-alanyl-D-alanine carboxypeptidase KQ254_08430 PF00854 POT family KQ254_08435 PF00120 Glutamine synthetase, catalytic domain KQ254_08435 PF03951 Glutamine synthetase, beta-Grasp domain KQ254_08440 PF04345 Chorismate lyase KQ254_08445 PF01040 UbiA prenyltransferase family KQ254_08480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KQ254_08480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KQ254_08485 PF01784 NIF3 (NGG1p interacting factor 3) KQ254_08490 PF13180 PDZ domain KQ254_08495 PF01743 Poly A polymerase head domain KQ254_08495 PF12627 Probable RNA and SrmB- binding site of polymerase A KQ254_08500 PF00390 Malic enzyme, N-terminal domain KQ254_08500 PF03949 Malic enzyme, NAD binding domain KQ254_08500 PF01515 Phosphate acetyl/butaryl transferase KQ254_08505 PF00563 EAL domain KQ254_08505 PF00990 Diguanylate cyclase, GGDEF domain KQ254_08505 PF03707 Bacterial signalling protein N terminal repeat KQ254_08510 PF04452 RNA methyltransferase KQ254_08515 PF02219 Methylenetetrahydrofolate reductase KQ254_08520 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KQ254_08520 PF05221 S-adenosyl-L-homocysteine hydrolase KQ254_08535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_08535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_08535 PF09317 Domain of unknown function (DUF1974) KQ254_08535 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_08540 PF04055 Radical SAM superfamily KQ254_08545 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_08545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ254_08555 PF07690 Major Facilitator Superfamily KQ254_08565 PF00557 Metallopeptidase family M24 KQ254_08570 PF00318 Ribosomal protein S2 KQ254_08575 PF00889 Elongation factor TS KQ254_08585 PF12833 Helix-turn-helix domain KQ254_08605 PF03330 Lytic transglycolase KQ254_08605 PF05036 Sporulation related domain KQ254_08610 PF13406 Transglycosylase SLT domain KQ254_08615 PF01098 Cell cycle protein KQ254_08625 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KQ254_08625 PF14489 QueF-like protein KQ254_08630 PF01061 ABC-2 type transporter KQ254_08635 PF00005 ABC transporter KQ254_08640 PF00589 Phage integrase family KQ254_08740 PF00772 DnaB-like helicase N terminal domain KQ254_08740 PF03796 DnaB-like helicase C terminal domain KQ254_08955 PF08346 AntA/AntB antirepressor KQ254_08955 PF10548 P22AR C-terminal domain KQ254_09030 PF00464 Serine hydroxymethyltransferase KQ254_09035 PF02321 Outer membrane efflux protein KQ254_09040 PF00873 AcrB/AcrD/AcrF family KQ254_09045 PF13533 Biotin-lipoyl like KQ254_09050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_09050 PF03466 LysR substrate binding domain KQ254_09055 PF00893 Small Multidrug Resistance protein KQ254_09060 PF00037 4Fe-4S binding domain KQ254_09065 PF01136 Peptidase family U32 KQ254_09065 PF16325 Peptidase family U32 C-terminal domain KQ254_09070 PF00392 Bacterial regulatory proteins, gntR family KQ254_09070 PF00155 Aminotransferase class I and II KQ254_09075 PF02567 Phenazine biosynthesis-like protein KQ254_09080 PF00970 Oxidoreductase FAD-binding domain KQ254_09080 PF00175 Oxidoreductase NAD-binding domain KQ254_09085 PF18389 TrmO C-terminal domain KQ254_09085 PF01980 tRNA-methyltransferase O KQ254_09095 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KQ254_09095 PF00437 Type II/IV secretion system protein KQ254_09105 PF00486 Transcriptional regulatory protein, C terminal KQ254_09105 PF00072 Response regulator receiver domain KQ254_09110 PF08521 Two-component sensor kinase N-terminal KQ254_09110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_09110 PF00512 His Kinase A (phospho-acceptor) domain KQ254_09120 PF00293 NUDIX domain KQ254_09130 PF14814 Bifunctional transglycosylase second domain KQ254_09130 PF00905 Penicillin binding protein transpeptidase domain KQ254_09130 PF00912 Transglycosylase KQ254_09135 PF01513 ATP-NAD kinase KQ254_09140 PF07023 Protein of unknown function (DUF1315) KQ254_09145 PF00591 Glycosyl transferase family, a/b domain KQ254_09145 PF02885 Glycosyl transferase family, helical bundle domain KQ254_09150 PF00375 Sodium:dicarboxylate symporter family KQ254_09155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_09155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_09155 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_09165 PF01842 ACT domain KQ254_09165 PF01817 Chorismate mutase type II KQ254_09165 PF00800 Prephenate dehydratase KQ254_09170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KQ254_09180 PF01546 Peptidase family M20/M25/M40 KQ254_09180 PF07687 Peptidase dimerisation domain KQ254_09185 PF00753 Metallo-beta-lactamase superfamily KQ254_09195 PF03883 Peroxide stress protein YaaA KQ254_09205 PF05690 Thiazole biosynthesis protein ThiG KQ254_09215 PF04241 Protein of unknown function (DUF423) KQ254_09220 PF00140 Sigma-70 factor, region 1.2 KQ254_09220 PF04542 Sigma-70 region 2 KQ254_09220 PF04545 Sigma-70, region 4 KQ254_09230 PF00313 'Cold-shock' DNA-binding domain KQ254_09235 PF00270 DEAD/DEAH box helicase KQ254_09235 PF00271 Helicase conserved C-terminal domain KQ254_09245 PF00881 Nitroreductase family KQ254_09250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KQ254_09250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KQ254_09270 PF01180 Dihydroorotate dehydrogenase KQ254_09275 PF02674 Colicin V production protein KQ254_09280 PF00156 Phosphoribosyl transferase domain KQ254_09295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ254_09295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ254_09300 PF01435 Peptidase family M48 KQ254_09305 PF09424 Yqey-like protein KQ254_09310 PF01165 Ribosomal protein S21 KQ254_09315 PF00814 Glycoprotease family KQ254_09335 PF03793 PASTA domain KQ254_09335 PF00069 Protein kinase domain KQ254_09360 PF03466 LysR substrate binding domain KQ254_09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_09365 PF00202 Aminotransferase class-III KQ254_09370 PF00171 Aldehyde dehydrogenase family KQ254_09375 PF00324 Amino acid permease KQ254_09405 PF04076 Bacterial OB fold (BOF) protein KQ254_09430 PF00561 alpha/beta hydrolase fold KQ254_09435 PF03616 Sodium/glutamate symporter KQ254_09445 PF07729 FCD domain KQ254_09445 PF00392 Bacterial regulatory proteins, gntR family KQ254_09460 PF13936 Helix-turn-helix domain KQ254_09460 PF00665 Integrase core domain KQ254_09505 PF00083 Sugar (and other) transporter KQ254_09505 PF08946 Osmosensory transporter coiled coil KQ254_09530 PF04403 Paraquat-inducible protein A KQ254_09535 PF02470 MlaD protein KQ254_09550 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_09550 PF00085 Thioredoxin KQ254_09555 PF01177 Asp/Glu/Hydantoin racemase KQ254_09570 PF00144 Beta-lactamase KQ254_09585 PF05675 Protein of unknown function (DUF817) KQ254_09590 PF01208 Uroporphyrinogen decarboxylase (URO-D) KQ254_09610 PF07995 Glucose / Sorbosone dehydrogenase KQ254_09630 PF00375 Sodium:dicarboxylate symporter family KQ254_09640 PF16123 Hydroxyacylglutathione hydrolase C-terminus KQ254_09640 PF00753 Metallo-beta-lactamase superfamily KQ254_09645 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_09650 PF09383 NIL domain KQ254_09650 PF00005 ABC transporter KQ254_09655 PF03180 NLPA lipoprotein KQ254_09660 PF02843 Phosphoribosylglycinamide synthetase, C domain KQ254_09660 PF02844 Phosphoribosylglycinamide synthetase, N domain KQ254_09660 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KQ254_09665 PF01808 AICARFT/IMPCHase bienzyme KQ254_09665 PF02142 MGS-like domain KQ254_09670 PF02954 Bacterial regulatory protein, Fis family KQ254_09690 PF01134 Glucose inhibited division protein A KQ254_09690 PF13932 GidA associated domain KQ254_09700 PF14403 Circularly permuted ATP-grasp type 2 KQ254_09710 PF08379 Bacterial transglutaminase-like N-terminal region KQ254_09710 PF01841 Transglutaminase-like superfamily KQ254_09720 PF00842 Alanine racemase, C-terminal domain KQ254_09720 PF01168 Alanine racemase, N-terminal domain KQ254_09725 PF03796 DnaB-like helicase C terminal domain KQ254_09725 PF00772 DnaB-like helicase N terminal domain KQ254_09730 PF03948 Ribosomal protein L9, C-terminal domain KQ254_09730 PF01281 Ribosomal protein L9, N-terminal domain KQ254_09735 PF01084 Ribosomal protein S18 KQ254_09740 PF01250 Ribosomal protein S6 KQ254_09745 PF01040 UbiA prenyltransferase family KQ254_09750 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KQ254_09755 PF00510 Cytochrome c oxidase subunit III KQ254_09760 PF00115 Cytochrome C and Quinol oxidase polypeptide I KQ254_09765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KQ254_09765 PF06481 COX Aromatic Rich Motif KQ254_09775 PF00391 PEP-utilising enzyme, mobile domain KQ254_09775 PF02896 PEP-utilising enzyme, TIM barrel domain KQ254_09775 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KQ254_09780 PF03618 Kinase/pyrophosphorylase KQ254_09790 PF01522 Polysaccharide deacetylase KQ254_09790 PF14883 Hypothetical glycosyl hydrolase family 13 KQ254_09795 PF00535 Glycosyl transferase family 2 KQ254_09800 PF13994 PgaD-like protein KQ254_09810 PF00296 Luciferase-like monooxygenase KQ254_09830 PF03466 LysR substrate binding domain KQ254_09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_09840 PF00472 RF-1 domain KQ254_09840 PF03462 PCRF domain KQ254_09845 PF17827 PrmC N-terminal domain KQ254_09845 PF13847 Methyltransferase domain KQ254_09850 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_09855 PF09084 NMT1/THI5 like KQ254_09860 PF12833 Helix-turn-helix domain KQ254_09865 PF00106 short chain dehydrogenase KQ254_09870 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_09870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_09870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_09875 PF00501 AMP-binding enzyme KQ254_09875 PF13193 AMP-binding enzyme C-terminal domain KQ254_09880 PF01613 Flavin reductase like domain KQ254_09885 PF00899 ThiF family KQ254_09890 PF03109 ABC1 family KQ254_09905 PF03814 Potassium-transporting ATPase A subunit KQ254_09915 PF02669 K+-transporting ATPase, c chain KQ254_09920 PF13493 Domain of unknown function (DUF4118) KQ254_09920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_09920 PF00512 His Kinase A (phospho-acceptor) domain KQ254_09920 PF02702 Osmosensitive K+ channel His kinase sensor domain KQ254_09925 PF00486 Transcriptional regulatory protein, C terminal KQ254_09925 PF00072 Response regulator receiver domain KQ254_09930 PF00120 Glutamine synthetase, catalytic domain KQ254_09940 PF03232 Ubiquinone biosynthesis protein COQ7 KQ254_09945 PF07690 Major Facilitator Superfamily KQ254_09950 PF01103 Surface antigen KQ254_09950 PF07244 Surface antigen variable number repeat KQ254_09950 PF17243 POTRA domain TamA domain 1 KQ254_09965 PF00330 Aconitase family (aconitate hydratase) KQ254_09965 PF06434 Aconitate hydratase 2 N-terminus KQ254_09965 PF11791 Aconitate B N-terminal domain KQ254_09970 PF13737 Transposase DDE domain KQ254_09980 PF00520 Ion transport protein KQ254_09980 PF00027 Cyclic nucleotide-binding domain KQ254_09985 PF07690 Major Facilitator Superfamily KQ254_10000 PF03466 LysR substrate binding domain KQ254_10000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_10005 PF04284 Protein of unknown function (DUF441) KQ254_10015 PF00849 RNA pseudouridylate synthase KQ254_10015 PF01479 S4 domain KQ254_10030 PF00849 RNA pseudouridylate synthase KQ254_10030 PF01479 S4 domain KQ254_10035 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KQ254_10040 PF01119 DNA mismatch repair protein, C-terminal domain KQ254_10040 PF08676 MutL C terminal dimerisation domain KQ254_10050 PF17209 Hfq protein KQ254_10060 PF00881 Nitroreductase family KQ254_10070 PF00149 Calcineurin-like phosphoesterase KQ254_10075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KQ254_10080 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KQ254_10080 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ254_10090 PF02540 NAD synthase KQ254_10090 PF00958 GMP synthase C terminal domain KQ254_10090 PF00117 Glutamine amidotransferase class-I KQ254_10095 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KQ254_10100 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KQ254_10105 PF13520 Amino acid permease KQ254_10110 PF00171 Aldehyde dehydrogenase family KQ254_10125 PF00465 Iron-containing alcohol dehydrogenase KQ254_10130 PF14493 Helix-turn-helix domain KQ254_10130 PF05970 PIF1-like helicase KQ254_10140 PF06445 GyrI-like small molecule binding domain KQ254_10140 PF12833 Helix-turn-helix domain KQ254_10145 PF02110 Hydroxyethylthiazole kinase family KQ254_10160 PF01433 Peptidase family M1 domain KQ254_10160 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KQ254_10160 PF11940 Domain of unknown function (DUF3458) Ig-like fold KQ254_10170 PF13737 Transposase DDE domain KQ254_10180 PF13953 PapC C-terminal domain KQ254_10180 PF13954 PapC N-terminal domain KQ254_10180 PF00577 Outer membrane usher protein KQ254_10205 PF01817 Chorismate mutase type II KQ254_10210 PF01037 Lrp/AsnC ligand binding domain KQ254_10220 PF00440 Bacterial regulatory proteins, tetR family KQ254_10225 PF07715 TonB-dependent Receptor Plug Domain KQ254_10225 PF00593 TonB dependent receptor KQ254_10230 PF00924 Mechanosensitive ion channel KQ254_10260 PF07715 TonB-dependent Receptor Plug Domain KQ254_10260 PF00593 TonB dependent receptor KQ254_10280 PF00005 ABC transporter KQ254_10280 PF12848 ABC transporter KQ254_10285 PF00582 Universal stress protein family KQ254_10310 PF00690 Cation transporter/ATPase, N-terminus KQ254_10310 PF00689 Cation transporting ATPase, C-terminus KQ254_10315 PF02308 MgtC family KQ254_10320 PF03594 Benzoate membrane transport protein KQ254_10325 PF01037 Lrp/AsnC ligand binding domain KQ254_10330 PF01810 LysE type translocator KQ254_10335 PF00923 Transaldolase/Fructose-6-phosphate aldolase KQ254_10340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_10340 PF03466 LysR substrate binding domain KQ254_10350 PF02803 Thiolase, C-terminal domain KQ254_10350 PF00108 Thiolase, N-terminal domain KQ254_10360 PF01575 MaoC like domain KQ254_10365 PF00144 Beta-lactamase KQ254_10375 PF07690 Major Facilitator Superfamily KQ254_10380 PF12170 DNA polymerase III tau subunit V interacting with alpha KQ254_10380 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KQ254_10380 PF12169 DNA polymerase III subunits gamma and tau domain III KQ254_10385 PF05506 Domain of unknown function (DUF756) KQ254_10385 PF04185 Phosphoesterase family KQ254_10390 PF03061 Thioesterase superfamily KQ254_10395 PF00465 Iron-containing alcohol dehydrogenase KQ254_10405 PF01451 Low molecular weight phosphotyrosine protein phosphatase KQ254_10410 PF01565 FAD binding domain KQ254_10410 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KQ254_10425 PF01645 Conserved region in glutamate synthase KQ254_10445 PF12832 MFS_1 like family KQ254_10455 PF02785 Biotin carboxylase C-terminal domain KQ254_10455 PF00289 Biotin carboxylase, N-terminal domain KQ254_10455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ254_10460 PF00364 Biotin-requiring enzyme KQ254_10465 PF01220 Dehydroquinase class II KQ254_10470 PF00817 impB/mucB/samB family KQ254_10470 PF11799 impB/mucB/samB family C-terminal domain KQ254_10470 PF13438 Domain of unknown function (DUF4113) KQ254_10480 PF00005 ABC transporter KQ254_10485 PF00486 Transcriptional regulatory protein, C terminal KQ254_10485 PF00072 Response regulator receiver domain KQ254_10495 PF04324 BFD-like [2Fe-2S] binding domain KQ254_10495 PF18267 Rubredoxin NAD+ reductase C-terminal domain KQ254_10495 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_10495 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ254_10495 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ254_10495 PF13806 Rieske-like [2Fe-2S] domain KQ254_10500 PF04324 BFD-like [2Fe-2S] binding domain KQ254_10500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ254_10500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ254_10500 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_10500 PF18267 Rubredoxin NAD+ reductase C-terminal domain KQ254_10505 PF01568 Molydopterin dinucleotide binding domain KQ254_10505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ254_10505 PF00384 Molybdopterin oxidoreductase KQ254_10505 PF04324 BFD-like [2Fe-2S] binding domain KQ254_10510 PF12804 MobA-like NTP transferase domain KQ254_10515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ254_10515 PF00384 Molybdopterin oxidoreductase KQ254_10515 PF01568 Molydopterin dinucleotide binding domain KQ254_10520 PF06463 Molybdenum Cofactor Synthesis C KQ254_10520 PF04055 Radical SAM superfamily KQ254_10530 PF02391 MoaE protein KQ254_10535 PF00994 Probable molybdopterin binding domain KQ254_10535 PF01967 MoaC family KQ254_10540 PF00994 Probable molybdopterin binding domain KQ254_10540 PF03453 MoeA N-terminal region (domain I and II) KQ254_10540 PF03454 MoeA C-terminal region (domain IV) KQ254_10545 PF01638 HxlR-like helix-turn-helix KQ254_10550 PF00392 Bacterial regulatory proteins, gntR family KQ254_10550 PF00155 Aminotransferase class I and II KQ254_10555 PF00892 EamA-like transporter family KQ254_10575 PF02635 DsrE/DsrF-like family KQ254_10580 PF16363 GDP-mannose 4,6 dehydratase KQ254_10585 PF10415 Fumarase C C-terminus KQ254_10585 PF00206 Lyase KQ254_10605 PF01266 FAD dependent oxidoreductase KQ254_10615 PF02542 YgbB family KQ254_10625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KQ254_10625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KQ254_10635 PF13936 Helix-turn-helix domain KQ254_10635 PF00665 Integrase core domain KQ254_10645 PF00158 Sigma-54 interaction domain KQ254_10645 PF00072 Response regulator receiver domain KQ254_10645 PF02954 Bacterial regulatory protein, Fis family KQ254_10650 PF00512 His Kinase A (phospho-acceptor) domain KQ254_10650 PF00989 PAS fold KQ254_10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_10655 PF04055 Radical SAM superfamily KQ254_10655 PF18693 TRAM domain KQ254_10655 PF00919 Uncharacterized protein family UPF0004 KQ254_10660 PF00696 Amino acid kinase family KQ254_10665 PF01765 Ribosome recycling factor KQ254_10670 PF01255 Putative undecaprenyl diphosphate synthase KQ254_10680 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KQ254_10680 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KQ254_10680 PF13288 DXP reductoisomerase C-terminal domain KQ254_10685 PF13180 PDZ domain KQ254_10685 PF17820 PDZ domain KQ254_10685 PF02163 Peptidase family M50 KQ254_10690 PF01103 Surface antigen KQ254_10690 PF07244 Surface antigen variable number repeat KQ254_10700 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_10700 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KQ254_10705 PF07977 FabA-like domain KQ254_10710 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_10710 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KQ254_10725 PF02631 RecX family KQ254_10730 PF00154 recA bacterial DNA recombination protein KQ254_10735 PF01479 S4 domain KQ254_10740 PF13419 Haloacid dehalogenase-like hydrolase KQ254_10765 PF01037 Lrp/AsnC ligand binding domain KQ254_10770 PF00266 Aminotransferase class-V KQ254_10775 PF00324 Amino acid permease KQ254_10785 PF13737 Transposase DDE domain KQ254_10790 PF05922 Peptidase inhibitor I9 KQ254_10790 PF00082 Subtilase family KQ254_10795 PF01740 STAS domain KQ254_10795 PF00916 Sulfate permease family KQ254_10800 PF02586 SOS response associated peptidase (SRAP) KQ254_10805 PF07995 Glucose / Sorbosone dehydrogenase KQ254_10815 PF00563 EAL domain KQ254_10815 PF00990 Diguanylate cyclase, GGDEF domain KQ254_10815 PF03707 Bacterial signalling protein N terminal repeat KQ254_10835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KQ254_10835 PF02378 Phosphotransferase system, EIIC KQ254_10840 PF00294 pfkB family carbohydrate kinase KQ254_10845 PF05524 PEP-utilising enzyme, N-terminal KQ254_10845 PF00391 PEP-utilising enzyme, mobile domain KQ254_10845 PF02896 PEP-utilising enzyme, TIM barrel domain KQ254_10845 PF00381 PTS HPr component phosphorylation site KQ254_10845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KQ254_10870 PF05525 Branched-chain amino acid transport protein KQ254_10875 PF00557 Metallopeptidase family M24 KQ254_10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_10880 PF03466 LysR substrate binding domain KQ254_10890 PF00462 Glutaredoxin KQ254_10895 PF00202 Aminotransferase class-III KQ254_10900 PF00571 CBS domain KQ254_10900 PF00478 IMP dehydrogenase / GMP reductase domain KQ254_10925 PF00448 SRP54-type protein, GTPase domain KQ254_10925 PF02881 SRP54-type protein, helical bundle domain KQ254_10935 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KQ254_10950 PF08173 Membrane bound YbgT-like protein KQ254_10955 PF02322 Cytochrome bd terminal oxidase subunit II KQ254_10960 PF01654 Cytochrome bd terminal oxidase subunit I KQ254_10975 PF07290 Protein of unknown function (DUF1449) KQ254_10985 PF00294 pfkB family carbohydrate kinase KQ254_10990 PF00593 TonB dependent receptor KQ254_10990 PF07715 TonB-dependent Receptor Plug Domain KQ254_10995 PF08367 Peptidase M16C associated KQ254_10995 PF05193 Peptidase M16 inactive domain KQ254_10995 PF00675 Insulinase (Peptidase family M16) KQ254_11000 PF02253 Phospholipase A1 KQ254_11005 PF02386 Cation transport protein KQ254_11010 PF02254 TrkA-N domain KQ254_11010 PF02080 TrkA-C domain KQ254_11015 PF00585 C-terminal regulatory domain of Threonine dehydratase KQ254_11015 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_11020 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KQ254_11035 PF02774 Semialdehyde dehydrogenase, dimerisation domain KQ254_11035 PF01118 Semialdehyde dehydrogenase, NAD binding domain KQ254_11045 PF02617 ATP-dependent Clp protease adaptor protein ClpS KQ254_11050 PF07724 AAA domain (Cdc48 subfamily) KQ254_11050 PF00004 ATPase family associated with various cellular activities (AAA) KQ254_11050 PF17871 AAA lid domain KQ254_11050 PF02861 Clp amino terminal domain, pathogenicity island component KQ254_11050 PF10431 C-terminal, D2-small domain, of ClpB protein KQ254_11055 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KQ254_11060 PF00793 DAHP synthetase I family KQ254_11075 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_11075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ254_11105 PF00117 Glutamine amidotransferase class-I KQ254_11105 PF06418 CTP synthase N-terminus KQ254_11110 PF00793 DAHP synthetase I family KQ254_11115 PF03952 Enolase, N-terminal domain KQ254_11115 PF00113 Enolase, C-terminal TIM barrel domain KQ254_11120 PF04239 Protein of unknown function (DUF421) KQ254_11125 PF04977 Septum formation initiator KQ254_11130 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KQ254_11135 PF01144 Coenzyme A transferase KQ254_11140 PF01144 Coenzyme A transferase KQ254_11145 PF00108 Thiolase, N-terminal domain KQ254_11145 PF02803 Thiolase, C-terminal domain KQ254_11150 PF10397 Adenylosuccinate lyase C-terminus KQ254_11150 PF00206 Lyase KQ254_11155 PF00561 alpha/beta hydrolase fold KQ254_11160 PF07690 Major Facilitator Superfamily KQ254_11165 PF02627 Carboxymuconolactone decarboxylase family KQ254_11170 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KQ254_11170 PF00775 Dioxygenase KQ254_11175 PF00775 Dioxygenase KQ254_11180 PF01487 Type I 3-dehydroquinase KQ254_11185 PF05048 Periplasmic copper-binding protein (NosD) KQ254_11195 PF13360 PQQ-like domain KQ254_11195 PF01011 PQQ enzyme repeat KQ254_11205 PF04143 Sulphur transport KQ254_11215 PF00753 Metallo-beta-lactamase superfamily KQ254_11220 PF01614 Bacterial transcriptional regulator KQ254_11220 PF09339 IclR helix-turn-helix domain KQ254_11225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_11225 PF03466 LysR substrate binding domain KQ254_11230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_11230 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_11230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_11245 PF00106 short chain dehydrogenase KQ254_11255 PF07690 Major Facilitator Superfamily KQ254_11265 PF01425 Amidase KQ254_11270 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ254_11285 PF00355 Rieske [2Fe-2S] domain KQ254_11285 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ254_11300 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_11300 PF00175 Oxidoreductase NAD-binding domain KQ254_11305 PF01613 Flavin reductase like domain KQ254_11310 PF02311 AraC-like ligand binding domain KQ254_11310 PF12833 Helix-turn-helix domain KQ254_11315 PF07833 Copper amine oxidase N-terminal domain KQ254_11315 PF01179 Copper amine oxidase, enzyme domain KQ254_11315 PF02728 Copper amine oxidase, N3 domain KQ254_11315 PF02727 Copper amine oxidase, N2 domain KQ254_11325 PF00171 Aldehyde dehydrogenase family KQ254_11330 PF12146 Serine aminopeptidase, S33 KQ254_11335 PF00108 Thiolase, N-terminal domain KQ254_11335 PF02803 Thiolase, C-terminal domain KQ254_11340 PF01144 Coenzyme A transferase KQ254_11345 PF01144 Coenzyme A transferase KQ254_11350 PF04444 Catechol dioxygenase N terminus KQ254_11350 PF00775 Dioxygenase KQ254_11355 PF02426 Muconolactone delta-isomerase KQ254_11360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KQ254_11360 PF13378 Enolase C-terminal domain-like KQ254_11365 PF03466 LysR substrate binding domain KQ254_11365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_11375 PF00392 Bacterial regulatory proteins, gntR family KQ254_11375 PF07729 FCD domain KQ254_11380 PF00920 Dehydratase family KQ254_11385 PF07690 Major Facilitator Superfamily KQ254_11395 PF00171 Aldehyde dehydrogenase family KQ254_11405 PF00561 alpha/beta hydrolase fold KQ254_11410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ254_11410 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_11425 PF13411 MerR HTH family regulatory protein KQ254_11435 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_11445 PF12706 Beta-lactamase superfamily domain KQ254_11450 PF00440 Bacterial regulatory proteins, tetR family KQ254_11450 PF08359 YsiA-like protein, C-terminal region KQ254_11455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_11455 PF03466 LysR substrate binding domain KQ254_11470 PF00106 short chain dehydrogenase KQ254_11475 PF01575 MaoC like domain KQ254_11480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_11480 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_11480 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ254_11480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_11490 PF00501 AMP-binding enzyme KQ254_11490 PF13193 AMP-binding enzyme C-terminal domain KQ254_11545 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) KQ254_11550 PF07690 Major Facilitator Superfamily KQ254_11555 PF04909 Amidohydrolase KQ254_11565 PF00392 Bacterial regulatory proteins, gntR family KQ254_11565 PF07702 UTRA domain KQ254_11570 PF08450 SMP-30/Gluconolactonase/LRE-like region KQ254_11580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_11580 PF03466 LysR substrate binding domain KQ254_11600 PF17961 Bacterial Ig domain KQ254_11600 PF00746 LPXTG cell wall anchor motif KQ254_11600 PF17210 SdrD B-like domain KQ254_11600 PF10425 C-terminus of bacterial fibrinogen-binding adhesin KQ254_11600 PF04650 YSIRK type signal peptide KQ254_11605 PF13533 Biotin-lipoyl like KQ254_11620 PF00171 Aldehyde dehydrogenase family KQ254_11625 PF00920 Dehydratase family KQ254_11635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_11635 PF03466 LysR substrate binding domain KQ254_11640 PF01370 NAD dependent epimerase/dehydratase family KQ254_11645 PF07690 Major Facilitator Superfamily KQ254_11650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ254_11650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ254_11655 PF06719 AraC-type transcriptional regulator N-terminus KQ254_11655 PF12833 Helix-turn-helix domain KQ254_11670 PF00107 Zinc-binding dehydrogenase KQ254_11670 PF08240 Alcohol dehydrogenase GroES-like domain KQ254_11680 PF01032 FecCD transport family KQ254_11685 PF00005 ABC transporter KQ254_11705 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KQ254_11705 PF14572 Phosphoribosyl synthetase-associated domain KQ254_11710 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KQ254_11725 PF13533 Biotin-lipoyl like KQ254_11730 PF07690 Major Facilitator Superfamily KQ254_11755 PF01975 Survival protein SurE KQ254_11765 PF13291 ACT domain KQ254_11765 PF04607 Region found in RelA / SpoT proteins KQ254_11765 PF02824 TGS domain KQ254_11825 PF13936 Helix-turn-helix domain KQ254_11825 PF00665 Integrase core domain KQ254_11835 PF13737 Transposase DDE domain KQ254_11845 PF12146 Serine aminopeptidase, S33 KQ254_11850 PF03466 LysR substrate binding domain KQ254_11850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_11860 PF12146 Serine aminopeptidase, S33 KQ254_11865 PF02311 AraC-like ligand binding domain KQ254_11865 PF12833 Helix-turn-helix domain KQ254_11875 PF00512 His Kinase A (phospho-acceptor) domain KQ254_11875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_11875 PF00672 HAMP domain KQ254_11875 PF16527 Two-component sensor protein CpxA, periplasmic domain KQ254_11880 PF00486 Transcriptional regulatory protein, C terminal KQ254_11880 PF00072 Response regulator receiver domain KQ254_11885 PF00529 HlyD membrane-fusion protein of T1SS KQ254_11885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ254_11890 PF00873 AcrB/AcrD/AcrF family KQ254_11895 PF00005 ABC transporter KQ254_11895 PF17755 UvrA DNA-binding domain KQ254_11895 PF17760 UvrA interaction domain KQ254_11905 PF16970 Type-1 fimbrial protein, A KQ254_11910 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KQ254_11910 PF02753 Pili assembly chaperone PapD, C-terminal domain KQ254_11915 PF00577 Outer membrane usher protein KQ254_11915 PF13954 PapC N-terminal domain KQ254_11915 PF13953 PapC C-terminal domain KQ254_11920 PF00419 Fimbrial protein KQ254_11930 PF00107 Zinc-binding dehydrogenase KQ254_11930 PF08240 Alcohol dehydrogenase GroES-like domain KQ254_11940 PF00199 Catalase KQ254_11955 PF13091 PLD-like domain KQ254_11970 PF01244 Membrane dipeptidase (Peptidase family M19) KQ254_11975 PF04055 Radical SAM superfamily KQ254_11975 PF13186 Iron-sulfur cluster-binding domain KQ254_11980 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KQ254_11985 PF03070 TENA/THI-4/PQQC family KQ254_11990 PF12706 Beta-lactamase superfamily domain KQ254_11995 PF08042 PqqA family KQ254_12000 PF13089 Polyphosphate kinase N-terminal domain KQ254_12000 PF17941 Polyphosphate kinase C-terminal domain 1 KQ254_12000 PF13090 Polyphosphate kinase C-terminal domain 2 KQ254_12000 PF02503 Polyphosphate kinase middle domain KQ254_12005 PF00149 Calcineurin-like phosphoesterase KQ254_12015 PF00857 Isochorismatase family KQ254_12015 PF00550 Phosphopantetheine attachment site KQ254_12020 PF00106 short chain dehydrogenase KQ254_12025 PF00005 ABC transporter KQ254_12025 PF03459 TOBE domain KQ254_12030 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_12040 PF03459 TOBE domain KQ254_12040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_12045 PF00355 Rieske [2Fe-2S] domain KQ254_12045 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ254_12050 PF00866 Ring hydroxylating beta subunit KQ254_12055 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_12055 PF00175 Oxidoreductase NAD-binding domain KQ254_12055 PF00970 Oxidoreductase FAD-binding domain KQ254_12060 PF12833 Helix-turn-helix domain KQ254_12060 PF14525 AraC-binding-like domain KQ254_12070 PF01613 Flavin reductase like domain KQ254_12085 PF01738 Dienelactone hydrolase family KQ254_12090 PF07690 Major Facilitator Superfamily KQ254_12095 PF12833 Helix-turn-helix domain KQ254_12095 PF06719 AraC-type transcriptional regulator N-terminus KQ254_12115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_12115 PF03466 LysR substrate binding domain KQ254_12120 PF01144 Coenzyme A transferase KQ254_12125 PF01144 Coenzyme A transferase KQ254_12130 PF02667 Short chain fatty acid transporter KQ254_12135 PF00108 Thiolase, N-terminal domain KQ254_12135 PF02803 Thiolase, C-terminal domain KQ254_12140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_12140 PF03466 LysR substrate binding domain KQ254_12145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_12145 PF03466 LysR substrate binding domain KQ254_12160 PF00206 Lyase KQ254_12160 PF10415 Fumarase C C-terminus KQ254_12165 PF00593 TonB dependent receptor KQ254_12165 PF07715 TonB-dependent Receptor Plug Domain KQ254_12170 PF00083 Sugar (and other) transporter KQ254_12185 PF00005 ABC transporter KQ254_12190 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_12195 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KQ254_12210 PF07702 UTRA domain KQ254_12210 PF00392 Bacterial regulatory proteins, gntR family KQ254_12215 PF02417 Chromate transporter KQ254_12220 PF02525 Flavodoxin-like fold KQ254_12225 PF01638 HxlR-like helix-turn-helix KQ254_12230 PF12833 Helix-turn-helix domain KQ254_12230 PF06445 GyrI-like small molecule binding domain KQ254_12245 PF01925 Sulfite exporter TauE/SafE KQ254_12250 PF00753 Metallo-beta-lactamase superfamily KQ254_12250 PF04273 Putative phosphatase (DUF442) KQ254_12255 PF04273 Putative phosphatase (DUF442) KQ254_12255 PF00753 Metallo-beta-lactamase superfamily KQ254_12260 PF00072 Response regulator receiver domain KQ254_12260 PF00158 Sigma-54 interaction domain KQ254_12260 PF02954 Bacterial regulatory protein, Fis family KQ254_12265 PF01062 Bestrophin, RFP-TM, chloride channel KQ254_12270 PF08240 Alcohol dehydrogenase GroES-like domain KQ254_12270 PF00107 Zinc-binding dehydrogenase KQ254_12275 PF00106 short chain dehydrogenase KQ254_12280 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_12280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ254_12285 PF02817 e3 binding domain KQ254_12285 PF00364 Biotin-requiring enzyme KQ254_12285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ254_12290 PF02780 Transketolase, C-terminal domain KQ254_12290 PF02779 Transketolase, pyrimidine binding domain KQ254_12295 PF00676 Dehydrogenase E1 component KQ254_12300 PF04055 Radical SAM superfamily KQ254_12315 PF13936 Helix-turn-helix domain KQ254_12315 PF00665 Integrase core domain KQ254_12325 PF00990 Diguanylate cyclase, GGDEF domain KQ254_12325 PF08448 PAS fold KQ254_12330 PF01264 Chorismate synthase KQ254_12335 PF05175 Methyltransferase small domain KQ254_12340 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_12350 PF17862 AAA+ lid domain KQ254_12350 PF00004 ATPase family associated with various cellular activities (AAA) KQ254_12350 PF01434 Peptidase family M41 KQ254_12360 PF05166 YcgL domain KQ254_12380 PF01612 3'-5' exonuclease KQ254_12380 PF00570 HRDC domain KQ254_12385 PF02132 RecR protein KQ254_12385 PF13662 Toprim domain KQ254_12390 PF02575 YbaB/EbfC DNA-binding family KQ254_12400 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ254_12405 PF00561 alpha/beta hydrolase fold KQ254_12410 PF08241 Methyltransferase domain KQ254_12440 PF01230 HIT domain KQ254_12475 PF00005 ABC transporter KQ254_12480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ254_12490 PF02684 Lipid-A-disaccharide synthetase KQ254_12495 PF07715 TonB-dependent Receptor Plug Domain KQ254_12495 PF00593 TonB dependent receptor KQ254_12515 PF01925 Sulfite exporter TauE/SafE KQ254_12520 PF00793 DAHP synthetase I family KQ254_12525 PF02654 Cobalamin-5-phosphate synthase KQ254_12540 PF02277 Phosphoribosyltransferase KQ254_12545 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KQ254_12555 PF13419 Haloacid dehalogenase-like hydrolase KQ254_12580 PF07715 TonB-dependent Receptor Plug Domain KQ254_12580 PF00593 TonB dependent receptor KQ254_12585 PF03737 Aldolase/RraA KQ254_12595 PF04183 IucA / IucC family KQ254_12595 PF06276 Ferric iron reductase FhuF-like transporter KQ254_12600 PF04183 IucA / IucC family KQ254_12600 PF06276 Ferric iron reductase FhuF-like transporter KQ254_12605 PF07690 Major Facilitator Superfamily KQ254_12610 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KQ254_12615 PF06276 Ferric iron reductase FhuF-like transporter KQ254_12615 PF04183 IucA / IucC family KQ254_12620 PF04073 Aminoacyl-tRNA editing domain KQ254_12630 PF03109 ABC1 family KQ254_12635 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_12635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_12635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_12640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_12640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_12640 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_12645 PF00487 Fatty acid desaturase KQ254_12650 PF12852 Cupin KQ254_12650 PF12833 Helix-turn-helix domain KQ254_12655 PF00639 PPIC-type PPIASE domain KQ254_12655 PF09312 SurA N-terminal domain KQ254_12660 PF00216 Bacterial DNA-binding protein KQ254_12675 PF02082 Transcriptional regulator KQ254_12680 PF00266 Aminotransferase class-V KQ254_12685 PF01592 NifU-like N terminal domain KQ254_12690 PF01521 Iron-sulphur cluster biosynthesis KQ254_12695 PF00226 DnaJ domain KQ254_12695 PF07743 HSCB C-terminal oligomerisation domain KQ254_12700 PF00012 Hsp70 protein KQ254_12705 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_12710 PF00211 Adenylate and Guanylate cyclase catalytic domain KQ254_12720 PF03461 TRCF domain KQ254_12720 PF17757 UvrB interaction domain KQ254_12720 PF00271 Helicase conserved C-terminal domain KQ254_12720 PF02559 CarD-like/TRCF domain KQ254_12720 PF00270 DEAD/DEAH box helicase KQ254_12740 PF03737 Aldolase/RraA KQ254_12745 PF13460 NAD(P)H-binding KQ254_12750 PF01649 Ribosomal protein S20 KQ254_12760 PF00459 Inositol monophosphatase family KQ254_12775 PF00005 ABC transporter KQ254_12775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KQ254_12780 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_12785 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_12790 PF01432 Peptidase family M3 KQ254_12805 PF00593 TonB dependent receptor KQ254_12805 PF07715 TonB-dependent Receptor Plug Domain KQ254_12810 PF03544 Gram-negative bacterial TonB protein C-terminal KQ254_12815 PF01618 MotA/TolQ/ExbB proton channel family KQ254_12820 PF02472 Biopolymer transport protein ExbD/TolR KQ254_12825 PF02472 Biopolymer transport protein ExbD/TolR KQ254_12835 PF01274 Malate synthase KQ254_12840 PF03969 AFG1-like ATPase KQ254_12850 PF00743 Flavin-binding monooxygenase-like KQ254_12860 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KQ254_12870 PF00216 Bacterial DNA-binding protein KQ254_12875 PF00575 S1 RNA binding domain KQ254_12880 PF02224 Cytidylate kinase KQ254_12890 PF14437 MafB19-like deaminase KQ254_12900 PF03167 Uracil DNA glycosylase superfamily KQ254_12910 PF03934 Type II secretion system (T2SS), protein K KQ254_12915 PF07963 Prokaryotic N-terminal methylation motif KQ254_12915 PF11612 Type II secretion system (T2SS), protein J KQ254_12920 PF07963 Prokaryotic N-terminal methylation motif KQ254_12920 PF02501 Type II secretion system (T2SS), protein I KQ254_12935 PF01026 TatD related DNase KQ254_12945 PF09115 DNA polymerase III, delta subunit, C terminal KQ254_12950 PF02348 Cytidylyltransferase KQ254_12955 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KQ254_12960 PF00664 ABC transporter transmembrane region KQ254_12960 PF00005 ABC transporter KQ254_12970 PF01618 MotA/TolQ/ExbB proton channel family KQ254_12975 PF02195 ParB-like nuclease domain KQ254_12975 PF17762 HTH domain found in ParB protein KQ254_12980 PF13614 AAA domain KQ254_12985 PF02527 rRNA small subunit methyltransferase G KQ254_12990 PF00483 Nucleotidyl transferase KQ254_12995 PF01636 Phosphotransferase enzyme family KQ254_13000 PF04453 LPS transport system D KQ254_13000 PF03968 OstA-like protein KQ254_13005 PF09312 SurA N-terminal domain KQ254_13005 PF00639 PPIC-type PPIASE domain KQ254_13010 PF01116 Fructose-bisphosphate aldolase class-II KQ254_13020 PF00162 Phosphoglycerate kinase KQ254_13030 PF02545 Maf-like protein KQ254_13035 PF08007 Cupin superfamily protein KQ254_13060 PF00375 Sodium:dicarboxylate symporter family KQ254_13065 PF06912 Protein of unknown function (DUF1275) KQ254_13070 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KQ254_13075 PF00664 ABC transporter transmembrane region KQ254_13075 PF00005 ABC transporter KQ254_13085 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ254_13085 PF12833 Helix-turn-helix domain KQ254_13090 PF01597 Glycine cleavage H-protein KQ254_13095 PF02146 Sir2 family KQ254_13100 PF00474 Sodium:solute symporter family KQ254_13105 PF01037 Lrp/AsnC ligand binding domain KQ254_13110 PF00171 Aldehyde dehydrogenase family KQ254_13110 PF01619 Proline dehydrogenase KQ254_13110 PF14850 DNA-binding domain of Proline dehydrogenase KQ254_13110 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KQ254_13115 PF04229 GrpB protein KQ254_13120 PF05958 tRNA (Uracil-5-)-methyltransferase KQ254_13130 PF09992 Phosphodiester glycosidase KQ254_13140 PF04264 YceI-like domain KQ254_13150 PF02780 Transketolase, C-terminal domain KQ254_13150 PF00456 Transketolase, thiamine diphosphate binding domain KQ254_13150 PF02779 Transketolase, pyrimidine binding domain KQ254_13155 PF02773 S-adenosylmethionine synthetase, C-terminal domain KQ254_13155 PF02772 S-adenosylmethionine synthetase, central domain KQ254_13155 PF00438 S-adenosylmethionine synthetase, N-terminal domain KQ254_13175 PF00905 Penicillin binding protein transpeptidase domain KQ254_13190 PF02075 Crossover junction endodeoxyribonuclease RuvC KQ254_13195 PF03853 YjeF-related protein N-terminus KQ254_13195 PF01256 Carbohydrate kinase KQ254_13200 PF08331 Domain of unknown function (DUF1730) KQ254_13205 PF04055 Radical SAM superfamily KQ254_13205 PF06968 Biotin and Thiamin Synthesis associated domain KQ254_13220 PF16970 Type-1 fimbrial protein, A KQ254_13225 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KQ254_13225 PF02753 Pili assembly chaperone PapD, C-terminal domain KQ254_13230 PF13953 PapC C-terminal domain KQ254_13230 PF13954 PapC N-terminal domain KQ254_13230 PF00577 Outer membrane usher protein KQ254_13250 PF00892 EamA-like transporter family KQ254_13260 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ254_13270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13270 PF03466 LysR substrate binding domain KQ254_13310 PF01709 Transcriptional regulator KQ254_13315 PF01037 Lrp/AsnC ligand binding domain KQ254_13325 PF00005 ABC transporter KQ254_13330 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_13335 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_13350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_13350 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ254_13360 PF00296 Luciferase-like monooxygenase KQ254_13365 PF03180 NLPA lipoprotein KQ254_13370 PF03180 NLPA lipoprotein KQ254_13375 PF09383 NIL domain KQ254_13375 PF00005 ABC transporter KQ254_13380 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_13385 PF06071 Protein of unknown function (DUF933) KQ254_13385 PF01926 50S ribosome-binding GTPase KQ254_13410 PF03591 AzlC protein KQ254_13415 PF05437 Branched-chain amino acid transport protein (AzlD) KQ254_13425 PF02222 ATP-grasp domain KQ254_13430 PF01909 Nucleotidyltransferase domain KQ254_13430 PF08335 GlnD PII-uridylyltransferase KQ254_13430 PF01966 HD domain KQ254_13435 PF00155 Aminotransferase class I and II KQ254_13445 PF12833 Helix-turn-helix domain KQ254_13445 PF12852 Cupin KQ254_13450 PF00255 Glutathione peroxidase KQ254_13455 PF01641 SelR domain KQ254_13460 PF00155 Aminotransferase class I and II KQ254_13465 PF00375 Sodium:dicarboxylate symporter family KQ254_13470 PF17763 Glutaminase/Asparaginase C-terminal domain KQ254_13470 PF00710 Asparaginase, N-terminal KQ254_13475 PF14579 Helix-hairpin-helix motif KQ254_13475 PF02811 PHP domain KQ254_13475 PF01336 OB-fold nucleic acid binding domain KQ254_13475 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KQ254_13475 PF07733 Bacterial DNA polymerase III alpha NTPase domain KQ254_13480 PF00588 SpoU rRNA Methylase family KQ254_13485 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_13500 PF13192 Thioredoxin domain KQ254_13500 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_13515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13515 PF03466 LysR substrate binding domain KQ254_13520 PF01758 Sodium Bile acid symporter family KQ254_13525 PF01022 Bacterial regulatory protein, arsR family KQ254_13540 PF01979 Amidohydrolase family KQ254_13540 PF13382 Adenine deaminase C-terminal domain KQ254_13550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13550 PF03466 LysR substrate binding domain KQ254_13560 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ254_13565 PF01177 Asp/Glu/Hydantoin racemase KQ254_13570 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KQ254_13575 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_13580 PF00005 ABC transporter KQ254_13585 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KQ254_13595 PF00083 Sugar (and other) transporter KQ254_13600 PF00296 Luciferase-like monooxygenase KQ254_13605 PF13737 Transposase DDE domain KQ254_13610 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_13610 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ254_13610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_13620 PF01654 Cytochrome bd terminal oxidase subunit I KQ254_13625 PF02322 Cytochrome bd terminal oxidase subunit II KQ254_13635 PF00155 Aminotransferase class I and II KQ254_13635 PF00392 Bacterial regulatory proteins, gntR family KQ254_13640 PF03466 LysR substrate binding domain KQ254_13640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13655 PF00698 Acyl transferase domain KQ254_13660 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KQ254_13670 PF01039 Carboxyl transferase domain KQ254_13675 PF06857 Malonate decarboxylase delta subunit (MdcD) KQ254_13680 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KQ254_13685 PF16957 Malonate decarboxylase, alpha subunit, transporter KQ254_13690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13690 PF03466 LysR substrate binding domain KQ254_13700 PF07690 Major Facilitator Superfamily KQ254_13715 PF00155 Aminotransferase class I and II KQ254_13715 PF00392 Bacterial regulatory proteins, gntR family KQ254_13720 PF04172 LrgB-like family KQ254_13725 PF03788 LrgA family KQ254_13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13730 PF03466 LysR substrate binding domain KQ254_13735 PF14834 Glutathione S-transferase, C-terminal domain KQ254_13735 PF02798 Glutathione S-transferase, N-terminal domain KQ254_13740 PF02798 Glutathione S-transferase, N-terminal domain KQ254_13745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13745 PF03466 LysR substrate binding domain KQ254_13755 PF00581 Rhodanese-like domain KQ254_13760 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_13770 PF00266 Aminotransferase class-V KQ254_13775 PF01810 LysE type translocator KQ254_13780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13780 PF03466 LysR substrate binding domain KQ254_13790 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ254_13795 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ254_13800 PF00005 ABC transporter KQ254_13805 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_13810 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_13825 PF00072 Response regulator receiver domain KQ254_13830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_13830 PF00512 His Kinase A (phospho-acceptor) domain KQ254_13830 PF09308 LuxQ, periplasmic KQ254_13830 PF00072 Response regulator receiver domain KQ254_13840 PF01037 Lrp/AsnC ligand binding domain KQ254_13840 PF13404 AsnC-type helix-turn-helix domain KQ254_13850 PF00717 Peptidase S24-like KQ254_13865 PF13737 Transposase DDE domain KQ254_13880 PF00199 Catalase KQ254_13880 PF06628 Catalase-related immune-responsive KQ254_13880 PF18011 C-terminal domain found in long catalases KQ254_13890 PF18146 Damage-inducible protein CinA KH domain KQ254_13890 PF00994 Probable molybdopterin binding domain KQ254_13890 PF02464 Competence-damaged protein KQ254_13925 PF03466 LysR substrate binding domain KQ254_13925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13945 PF13193 AMP-binding enzyme C-terminal domain KQ254_13945 PF00501 AMP-binding enzyme KQ254_13950 PF00440 Bacterial regulatory proteins, tetR family KQ254_13955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_13955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_13955 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_13960 PF01039 Carboxyl transferase domain KQ254_13965 PF00378 Enoyl-CoA hydratase/isomerase KQ254_13970 PF18140 Propionyl-coenzyme A carboxylase BT domain KQ254_13970 PF00364 Biotin-requiring enzyme KQ254_13970 PF00289 Biotin carboxylase, N-terminal domain KQ254_13970 PF02785 Biotin carboxylase C-terminal domain KQ254_13970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ254_13975 PF00682 HMGL-like KQ254_13980 PF03466 LysR substrate binding domain KQ254_13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_13995 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ254_13995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_13995 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_13995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_14005 PF07690 Major Facilitator Superfamily KQ254_14015 PF01144 Coenzyme A transferase KQ254_14020 PF01144 Coenzyme A transferase KQ254_14025 PF07690 Major Facilitator Superfamily KQ254_14030 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_14030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_14030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_14035 PF00378 Enoyl-CoA hydratase/isomerase KQ254_14045 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KQ254_14045 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ254_14045 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ254_14050 PF02803 Thiolase, C-terminal domain KQ254_14050 PF00108 Thiolase, N-terminal domain KQ254_14055 PF09339 IclR helix-turn-helix domain KQ254_14060 PF07690 Major Facilitator Superfamily KQ254_14065 PF03060 Nitronate monooxygenase KQ254_14070 PF00378 Enoyl-CoA hydratase/isomerase KQ254_14075 PF09339 IclR helix-turn-helix domain KQ254_14080 PF02515 CoA-transferase family III KQ254_14085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_14085 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_14085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_14090 PF07690 Major Facilitator Superfamily KQ254_14095 PF13419 Haloacid dehalogenase-like hydrolase KQ254_14100 PF00266 Aminotransferase class-V KQ254_14105 PF01266 FAD dependent oxidoreductase KQ254_14115 PF00005 ABC transporter KQ254_14115 PF08402 TOBE domain KQ254_14125 PF00392 Bacterial regulatory proteins, gntR family KQ254_14125 PF07702 UTRA domain KQ254_14130 PF01494 FAD binding domain KQ254_14135 PF01614 Bacterial transcriptional regulator KQ254_14135 PF09339 IclR helix-turn-helix domain KQ254_14140 PF02525 Flavodoxin-like fold KQ254_14145 PF03466 LysR substrate binding domain KQ254_14145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_14150 PF02627 Carboxymuconolactone decarboxylase family KQ254_14155 PF00171 Aldehyde dehydrogenase family KQ254_14165 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ254_14175 PF00171 Aldehyde dehydrogenase family KQ254_14180 PF00296 Luciferase-like monooxygenase KQ254_14185 PF01613 Flavin reductase like domain KQ254_14190 PF12697 Alpha/beta hydrolase family KQ254_14210 PF01292 Prokaryotic cytochrome b561 KQ254_14215 PF00199 Catalase KQ254_14250 PF03061 Thioesterase superfamily KQ254_14255 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_14260 PF07848 PaaX-like protein KQ254_14260 PF08223 PaaX-like protein C-terminal domain KQ254_14265 PF14535 AMP-binding enzyme C-terminal domain KQ254_14265 PF00501 AMP-binding enzyme KQ254_14270 PF02803 Thiolase, C-terminal domain KQ254_14270 PF00108 Thiolase, N-terminal domain KQ254_14275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ254_14275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ254_14275 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KQ254_14280 PF00378 Enoyl-CoA hydratase/isomerase KQ254_14285 PF00378 Enoyl-CoA hydratase/isomerase KQ254_14290 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_14290 PF00175 Oxidoreductase NAD-binding domain KQ254_14290 PF00970 Oxidoreductase FAD-binding domain KQ254_14295 PF01883 Iron-sulfur cluster assembly protein KQ254_14300 PF05138 Phenylacetic acid catabolic protein KQ254_14305 PF06243 Phenylacetic acid degradation B KQ254_14310 PF05138 Phenylacetic acid catabolic protein KQ254_14315 PF01575 MaoC like domain KQ254_14315 PF00171 Aldehyde dehydrogenase family KQ254_14320 PF03313 Serine dehydratase alpha chain KQ254_14320 PF03315 Serine dehydratase beta chain KQ254_14325 PF13520 Amino acid permease KQ254_14330 PF00171 Aldehyde dehydrogenase family KQ254_14335 PF00083 Sugar (and other) transporter KQ254_14345 PF04324 BFD-like [2Fe-2S] binding domain KQ254_14345 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_14355 PF01266 FAD dependent oxidoreductase KQ254_14360 PF05544 Proline racemase KQ254_14365 PF00392 Bacterial regulatory proteins, gntR family KQ254_14375 PF00701 Dihydrodipicolinate synthetase family KQ254_14385 PF00376 MerR family regulatory protein KQ254_14385 PF09278 MerR, DNA binding KQ254_14395 PF02677 Epoxyqueuosine reductase QueH KQ254_14410 PF07690 Major Facilitator Superfamily KQ254_14415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KQ254_14425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_14425 PF03466 LysR substrate binding domain KQ254_14445 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KQ254_14450 PF06812 ImpA, N-terminal, type VI secretion system KQ254_14455 PF17871 AAA lid domain KQ254_14455 PF00004 ATPase family associated with various cellular activities (AAA) KQ254_14455 PF07724 AAA domain (Cdc48 subfamily) KQ254_14455 PF10431 C-terminal, D2-small domain, of ClpB protein KQ254_14465 PF01389 OmpA-like transmembrane domain KQ254_14465 PF00691 OmpA family KQ254_14475 PF14331 ImcF-related N-terminal domain KQ254_14475 PF06761 Intracellular multiplication and human macrophage-killing KQ254_14475 PF06744 Type VI secretion protein IcmF C-terminal KQ254_14490 PF05947 Type VI secretion system, TssF KQ254_14505 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KQ254_14520 PF13737 Transposase DDE domain KQ254_14540 PF00005 ABC transporter KQ254_14550 PF01425 Amidase KQ254_14555 PF08753 NikR C terminal nickel binding domain KQ254_14555 PF01402 Ribbon-helix-helix protein, copG family KQ254_14565 PF01638 HxlR-like helix-turn-helix KQ254_14570 PF02525 Flavodoxin-like fold KQ254_14575 PF02785 Biotin carboxylase C-terminal domain KQ254_14575 PF00289 Biotin carboxylase, N-terminal domain KQ254_14575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ254_14590 PF08240 Alcohol dehydrogenase GroES-like domain KQ254_14590 PF13823 Alcohol dehydrogenase GroES-associated KQ254_14590 PF00107 Zinc-binding dehydrogenase KQ254_14600 PF00440 Bacterial regulatory proteins, tetR family KQ254_14615 PF13936 Helix-turn-helix domain KQ254_14615 PF00665 Integrase core domain KQ254_14625 PF00364 Biotin-requiring enzyme KQ254_14625 PF02785 Biotin carboxylase C-terminal domain KQ254_14625 PF00289 Biotin carboxylase, N-terminal domain KQ254_14625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ254_14635 PF07286 Protein of unknown function (DUF1445) KQ254_14640 PF03746 LamB/YcsF family KQ254_14645 PF01566 Natural resistance-associated macrophage protein KQ254_14650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_14650 PF03466 LysR substrate binding domain KQ254_14690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ254_14690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ254_14710 PF07690 Major Facilitator Superfamily KQ254_14720 PF03279 Bacterial lipid A biosynthesis acyltransferase KQ254_14725 PF00990 Diguanylate cyclase, GGDEF domain KQ254_14725 PF00563 EAL domain KQ254_14725 PF03707 Bacterial signalling protein N terminal repeat KQ254_14730 PF00892 EamA-like transporter family KQ254_14735 PF01037 Lrp/AsnC ligand binding domain KQ254_14740 PF00488 MutS domain V KQ254_14740 PF05192 MutS domain III KQ254_14740 PF05188 MutS domain II KQ254_14740 PF01624 MutS domain I KQ254_14740 PF05190 MutS family domain IV KQ254_14750 PF11953 Domain of unknown function (DUF3470) KQ254_14750 PF00037 4Fe-4S binding domain KQ254_14760 PF01596 O-methyltransferase KQ254_14770 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_14775 PF01205 Uncharacterized protein family UPF0029 KQ254_14785 PF03412 Peptidase C39 family KQ254_14785 PF00664 ABC transporter transmembrane region KQ254_14785 PF00005 ABC transporter KQ254_14790 PF02321 Outer membrane efflux protein KQ254_14795 PF00005 ABC transporter KQ254_14795 PF12399 Branched-chain amino acid ATP-binding cassette transporter KQ254_14800 PF03968 OstA-like protein KQ254_14815 PF00571 CBS domain KQ254_14815 PF01380 SIS domain KQ254_14820 PF09190 DALR domain KQ254_14820 PF01406 tRNA synthetases class I (C) catalytic domain KQ254_14850 PF01638 HxlR-like helix-turn-helix KQ254_14855 PF07690 Major Facilitator Superfamily KQ254_14880 PF03807 NADP oxidoreductase coenzyme F420-dependent KQ254_14880 PF14748 Pyrroline-5-carboxylate reductase dimerisation KQ254_14890 PF00313 'Cold-shock' DNA-binding domain KQ254_14895 PF01810 LysE type translocator KQ254_14925 PF02601 Exonuclease VII, large subunit KQ254_14925 PF13742 OB-fold nucleic acid binding domain KQ254_14960 PF00376 MerR family regulatory protein KQ254_14960 PF09278 MerR, DNA binding KQ254_14965 PF00403 Heavy-metal-associated domain KQ254_14970 PF00403 Heavy-metal-associated domain KQ254_14975 PF03466 LysR substrate binding domain KQ254_14975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_14980 PF00355 Rieske [2Fe-2S] domain KQ254_14980 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ254_14985 PF00866 Ring hydroxylating beta subunit KQ254_14990 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_14990 PF00175 Oxidoreductase NAD-binding domain KQ254_14990 PF00970 Oxidoreductase FAD-binding domain KQ254_14995 PF00106 short chain dehydrogenase KQ254_15000 PF03594 Benzoate membrane transport protein KQ254_15005 PF07690 Major Facilitator Superfamily KQ254_15015 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KQ254_15015 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KQ254_15020 PF00270 DEAD/DEAH box helicase KQ254_15020 PF11898 Domain of unknown function (DUF3418) KQ254_15020 PF04408 Helicase associated domain (HA2) KQ254_15020 PF00271 Helicase conserved C-terminal domain KQ254_15020 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KQ254_15025 PF10417 C-terminal domain of 1-Cys peroxiredoxin KQ254_15025 PF00578 AhpC/TSA family KQ254_15045 PF13192 Thioredoxin domain KQ254_15045 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_15055 PF00043 Glutathione S-transferase, C-terminal domain KQ254_15055 PF02798 Glutathione S-transferase, N-terminal domain KQ254_15065 PF02390 Putative methyltransferase KQ254_15070 PF00043 Glutathione S-transferase, C-terminal domain KQ254_15070 PF13417 Glutathione S-transferase, N-terminal domain KQ254_15085 PF13488 Glycine zipper KQ254_15085 PF00691 OmpA family KQ254_15090 PF01979 Amidohydrolase family KQ254_15095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KQ254_15095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KQ254_15105 PF10672 S-adenosylmethionine-dependent methyltransferase KQ254_15105 PF02926 THUMP domain KQ254_15105 PF01170 Putative RNA methylase family UPF0020 KQ254_15120 PF00004 ATPase family associated with various cellular activities (AAA) KQ254_15120 PF07724 AAA domain (Cdc48 subfamily) KQ254_15120 PF17871 AAA lid domain KQ254_15120 PF10431 C-terminal, D2-small domain, of ClpB protein KQ254_15120 PF02861 Clp amino terminal domain, pathogenicity island component KQ254_15135 PF02566 OsmC-like protein KQ254_15145 PF13545 Crp-like helix-turn-helix domain KQ254_15145 PF00027 Cyclic nucleotide-binding domain KQ254_15150 PF00248 Aldo/keto reductase family KQ254_15165 PF00709 Adenylosuccinate synthetase KQ254_15170 PF13393 Histidyl-tRNA synthetase KQ254_15180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KQ254_15180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KQ254_15185 PF02272 DHHA1 domain KQ254_15185 PF01411 tRNA synthetases class II (A) KQ254_15185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KQ254_15190 PF00696 Amino acid kinase family KQ254_15190 PF01842 ACT domain KQ254_15190 PF13840 ACT domain KQ254_15195 PF02599 Global regulator protein family KQ254_15200 PF01351 Ribonuclease HII KQ254_15210 PF01292 Prokaryotic cytochrome b561 KQ254_15215 PF00962 Adenosine/AMP deaminase KQ254_15220 PF00860 Permease family KQ254_15230 PF00743 Flavin-binding monooxygenase-like KQ254_15235 PF00106 short chain dehydrogenase KQ254_15245 PF17954 Quercetinase C-terminal cupin domain KQ254_15245 PF02678 Pirin KQ254_15250 PF17932 Tetracyclin repressor-like, C-terminal domain KQ254_15250 PF00440 Bacterial regulatory proteins, tetR family KQ254_15260 PF00106 short chain dehydrogenase KQ254_15265 PF00743 Flavin-binding monooxygenase-like KQ254_15270 PF04072 Leucine carboxyl methyltransferase KQ254_15275 PF12833 Helix-turn-helix domain KQ254_15275 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ254_15280 PF00743 Flavin-binding monooxygenase-like KQ254_15285 PF00106 short chain dehydrogenase KQ254_15290 PF07859 alpha/beta hydrolase fold KQ254_15295 PF05199 GMC oxidoreductase KQ254_15300 PF03573 outer membrane porin, OprD family KQ254_15305 PF07690 Major Facilitator Superfamily KQ254_15310 PF00355 Rieske [2Fe-2S] domain KQ254_15315 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_15315 PF00175 Oxidoreductase NAD-binding domain KQ254_15330 PF07690 Major Facilitator Superfamily KQ254_15335 PF00378 Enoyl-CoA hydratase/isomerase KQ254_15340 PF00171 Aldehyde dehydrogenase family KQ254_15350 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_15350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_15350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_15360 PF13737 Transposase DDE domain KQ254_15370 PF00324 Amino acid permease KQ254_15380 PF05643 Putative bacterial lipoprotein (DUF799) KQ254_15390 PF03783 Curli production assembly/transport component CsgG KQ254_15410 PF03180 NLPA lipoprotein KQ254_15420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ254_15420 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_15425 PF00764 Arginosuccinate synthase KQ254_15430 PF00563 EAL domain KQ254_15430 PF01590 GAF domain KQ254_15430 PF00990 Diguanylate cyclase, GGDEF domain KQ254_15430 PF00360 Phytochrome region KQ254_15435 PF01979 Amidohydrolase family KQ254_15440 PF00929 Exonuclease KQ254_15450 PF07715 TonB-dependent Receptor Plug Domain KQ254_15450 PF00593 TonB dependent receptor KQ254_15455 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_15455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ254_15460 PF00005 ABC transporter KQ254_15460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KQ254_15465 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_15465 PF12911 N-terminal TM domain of oligopeptide transport permease C KQ254_15470 PF00528 Binding-protein-dependent transport system inner membrane component KQ254_15475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KQ254_15480 PF01476 LysM domain KQ254_15480 PF01464 Transglycosylase SLT domain KQ254_15480 PF01476 LysM domain KQ254_15480 PF01464 Transglycosylase SLT domain KQ254_15485 PF00929 Exonuclease KQ254_15495 PF00293 NUDIX domain KQ254_15495 PF09297 NADH pyrophosphatase zinc ribbon domain KQ254_15505 PF04972 BON domain KQ254_15515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KQ254_15530 PF01810 LysE type translocator KQ254_15540 PF13411 MerR HTH family regulatory protein KQ254_15550 PF01494 FAD binding domain KQ254_15555 PF01494 FAD binding domain KQ254_15560 PF05195 Aminopeptidase P, N-terminal domain KQ254_15560 PF00557 Metallopeptidase family M24 KQ254_15640 PF01464 Transglycosylase SLT domain KQ254_15640 PF01551 Peptidase family M23 KQ254_15640 PF10145 Phage-related minor tail protein KQ254_15710 PF00772 DnaB-like helicase N terminal domain KQ254_15710 PF03796 DnaB-like helicase C terminal domain KQ254_15725 PF00717 Peptidase S24-like KQ254_15725 PF01726 LexA DNA binding domain KQ254_15775 PF08019 Phosphoethanolamine transferase EptA/EptB KQ254_15775 PF00884 Sulfatase KQ254_15835 PF13936 Helix-turn-helix domain KQ254_15835 PF00665 Integrase core domain KQ254_16045 PF00717 Peptidase S24-like KQ254_16045 PF01726 LexA DNA binding domain KQ254_16115 PF01812 5-formyltetrahydrofolate cyclo-ligase family KQ254_16120 PF04355 SmpA / OmlA family KQ254_16120 PF00691 OmpA family KQ254_16130 PF13737 Transposase DDE domain KQ254_16135 PF02190 ATP-dependent protease La (LON) substrate-binding domain KQ254_16135 PF00004 ATPase family associated with various cellular activities (AAA) KQ254_16135 PF05362 Lon protease (S16) C-terminal proteolytic domain KQ254_16140 PF02590 Predicted SPOUT methyltransferase KQ254_16145 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KQ254_16155 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KQ254_16155 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KQ254_16160 PF04060 Putative Fe-S cluster KQ254_16165 PF10576 Iron-sulfur binding domain of endonuclease III KQ254_16165 PF00633 Helix-hairpin-helix motif KQ254_16165 PF00730 HhH-GPD superfamily base excision DNA repair protein KQ254_16175 PF05191 Adenylate kinase, active site lid KQ254_16190 PF00905 Penicillin binding protein transpeptidase domain KQ254_16190 PF03717 Penicillin-binding Protein dimerisation domain KQ254_16205 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ254_16210 PF01730 UreF KQ254_16215 PF02814 UreE urease accessory protein, N-terminal domain KQ254_16215 PF05194 UreE urease accessory protein, C-terminal domain KQ254_16225 PF00547 Urease, gamma subunit KQ254_16230 PF01774 UreD urease accessory protein KQ254_16245 PF00463 Isocitrate lyase family KQ254_16250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_16250 PF03466 LysR substrate binding domain KQ254_16255 PF03471 Transporter associated domain KQ254_16255 PF01595 Cyclin M transmembrane N-terminal domain KQ254_16255 PF00571 CBS domain KQ254_16260 PF03600 Citrate transporter KQ254_16275 PF00009 Elongation factor Tu GTP binding domain KQ254_16280 PF01507 Phosphoadenosine phosphosulfate reductase family KQ254_16290 PF14052 Capsule assembly protein Wzi KQ254_16295 PF00152 tRNA synthetases class II (D, K and N) KQ254_16295 PF01336 OB-fold nucleic acid binding domain KQ254_16310 PF00301 Rubredoxin KQ254_16315 PF18113 Rubredoxin binding C-terminal domain KQ254_16315 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_16320 PF00561 alpha/beta hydrolase fold KQ254_16325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_16325 PF03466 LysR substrate binding domain KQ254_16340 PF13090 Polyphosphate kinase C-terminal domain 2 KQ254_16340 PF02503 Polyphosphate kinase middle domain KQ254_16340 PF17941 Polyphosphate kinase C-terminal domain 1 KQ254_16340 PF13089 Polyphosphate kinase N-terminal domain KQ254_16345 PF00912 Transglycosylase KQ254_16350 PF01694 Rhomboid family KQ254_16360 PF00005 ABC transporter KQ254_16365 PF13472 GDSL-like Lipase/Acylhydrolase family KQ254_16370 PF00484 Carbonic anhydrase KQ254_16375 PF00561 alpha/beta hydrolase fold KQ254_16385 PF07715 TonB-dependent Receptor Plug Domain KQ254_16385 PF00593 TonB dependent receptor KQ254_16390 PF01521 Iron-sulphur cluster biosynthesis KQ254_16390 PF01106 NifU-like domain KQ254_16400 PF00884 Sulfatase KQ254_16405 PF03781 Sulfatase-modifying factor enzyme 1 KQ254_16420 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_16425 PF01384 Phosphate transporter family KQ254_16430 PF00809 Pterin binding enzyme KQ254_16430 PF02574 Homocysteine S-methyltransferase KQ254_16430 PF02607 B12 binding domain KQ254_16430 PF02310 B12 binding domain KQ254_16430 PF02965 Vitamin B12 dependent methionine synthase, activation domain KQ254_16435 PF02779 Transketolase, pyrimidine binding domain KQ254_16435 PF02780 Transketolase, C-terminal domain KQ254_16440 PF00456 Transketolase, thiamine diphosphate binding domain KQ254_16445 PF07690 Major Facilitator Superfamily KQ254_16455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_16455 PF03466 LysR substrate binding domain KQ254_16465 PF01263 Aldose 1-epimerase KQ254_16475 PF07690 Major Facilitator Superfamily KQ254_16480 PF12833 Helix-turn-helix domain KQ254_16480 PF02311 AraC-like ligand binding domain KQ254_16485 PF04960 Glutaminase KQ254_16490 PF01327 Polypeptide deformylase KQ254_16495 PF07690 Major Facilitator Superfamily KQ254_16505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ254_16505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ254_16505 PF00205 Thiamine pyrophosphate enzyme, central domain KQ254_16510 PF00171 Aldehyde dehydrogenase family KQ254_16515 PF03447 Homoserine dehydrogenase, NAD binding domain KQ254_16515 PF01958 Domain of unknown function DUF108 KQ254_16525 PF12697 Alpha/beta hydrolase family KQ254_16535 PF07690 Major Facilitator Superfamily KQ254_16540 PF14759 Reductase C-terminal KQ254_16540 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_16545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ254_16555 PF00355 Rieske [2Fe-2S] domain KQ254_16565 PF00355 Rieske [2Fe-2S] domain KQ254_16570 PF09339 IclR helix-turn-helix domain KQ254_16570 PF01614 Bacterial transcriptional regulator KQ254_16585 PF00378 Enoyl-CoA hydratase/isomerase KQ254_16595 PF00535 Glycosyl transferase family 2 KQ254_16600 PF14883 Hypothetical glycosyl hydrolase family 13 KQ254_16600 PF01522 Polysaccharide deacetylase KQ254_16605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ254_16610 PF07152 YaeQ protein KQ254_16615 PF00375 Sodium:dicarboxylate symporter family KQ254_16620 PF07683 Cobalamin synthesis protein cobW C-terminal domain KQ254_16620 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ254_16630 PF03061 Thioesterase superfamily KQ254_16640 PF02028 BCCT, betaine/carnitine/choline family transporter KQ254_16645 PF02028 BCCT, betaine/carnitine/choline family transporter KQ254_16650 PF00440 Bacterial regulatory proteins, tetR family KQ254_16650 PF13977 BetI-type transcriptional repressor, C-terminal KQ254_16655 PF00171 Aldehyde dehydrogenase family KQ254_16660 PF00732 GMC oxidoreductase KQ254_16660 PF05199 GMC oxidoreductase KQ254_16665 PF06039 Malate:quinone oxidoreductase (Mqo) KQ254_16675 PF02574 Homocysteine S-methyltransferase KQ254_16680 PF13520 Amino acid permease KQ254_16705 PF01126 Heme oxygenase KQ254_16715 PF04575 Protein of unknown function (DUF560) KQ254_16725 PF00593 TonB dependent receptor KQ254_16725 PF07715 TonB-dependent Receptor Plug Domain KQ254_16735 PF04542 Sigma-70 region 2 KQ254_16735 PF08281 Sigma-70, region 4 KQ254_16745 PF00701 Dihydrodipicolinate synthetase family KQ254_16750 PF00083 Sugar (and other) transporter KQ254_16775 PF18766 SWI2/SNF2 ATPase KQ254_16775 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KQ254_16775 PF11867 Domain of unknown function (DUF3387) KQ254_16785 PF02384 N-6 DNA Methylase KQ254_16800 PF00717 Peptidase S24-like KQ254_16805 PF13438 Domain of unknown function (DUF4113) KQ254_16805 PF00817 impB/mucB/samB family KQ254_16805 PF11799 impB/mucB/samB family C-terminal domain KQ254_16805 PF11798 IMS family HHH motif KQ254_16890 PF02767 DNA polymerase III beta subunit, central domain KQ254_16890 PF00712 DNA polymerase III beta subunit, N-terminal domain KQ254_16890 PF02768 DNA polymerase III beta subunit, C-terminal domain KQ254_16930 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KQ254_17125 PF01695 IstB-like ATP binding protein KQ254_17135 PF00145 C-5 cytosine-specific DNA methylase KQ254_17220 PF00929 Exonuclease KQ254_17295 PF07690 Major Facilitator Superfamily KQ254_17300 PF13533 Biotin-lipoyl like KQ254_17305 PF03061 Thioesterase superfamily KQ254_17310 PF00490 Delta-aminolevulinic acid dehydratase KQ254_17315 PF01266 FAD dependent oxidoreductase KQ254_17320 PF01370 NAD dependent epimerase/dehydratase family KQ254_17320 PF08338 Domain of unknown function (DUF1731) KQ254_17340 PF12320 Type 5 capsule protein repressor C-terminal domain KQ254_17340 PF00149 Calcineurin-like phosphoesterase KQ254_17350 PF01168 Alanine racemase, N-terminal domain KQ254_17355 PF00437 Type II/IV secretion system protein KQ254_17365 PF13936 Helix-turn-helix domain KQ254_17365 PF00665 Integrase core domain KQ254_17375 PF01475 Ferric uptake regulator family KQ254_17380 PF04355 SmpA / OmlA family KQ254_17385 PF03658 RnfH family Ubiquitin KQ254_17395 PF01814 Hemerythrin HHE cation binding domain KQ254_17400 PF13230 Glutamine amidotransferases class-II KQ254_17410 PF00696 Amino acid kinase family KQ254_17415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ254_17415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ254_17415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ254_17415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ254_17420 PF00692 dUTPase KQ254_17425 PF00580 UvrD/REP helicase N-terminal domain KQ254_17425 PF13361 UvrD-like helicase C-terminal domain KQ254_17430 PF00691 OmpA family KQ254_17430 PF13488 Glycine zipper KQ254_17435 PF01553 Acyltransferase KQ254_17445 PF03775 Septum formation inhibitor MinC, C-terminal domain KQ254_17450 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KQ254_17455 PF03776 Septum formation topological specificity factor MinE KQ254_17465 PF01810 LysE type translocator KQ254_17470 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KQ254_17470 PF01580 FtsK/SpoIIIE family KQ254_17470 PF17854 FtsK alpha domain KQ254_17470 PF09397 Ftsk gamma domain KQ254_17475 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ254_17480 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KQ254_17485 PF04376 Arginine-tRNA-protein transferase, N terminus KQ254_17485 PF04377 Arginine-tRNA-protein transferase, C terminus KQ254_17490 PF00583 Acetyltransferase (GNAT) family KQ254_17505 PF03143 Elongation factor Tu C-terminal domain KQ254_17505 PF03144 Elongation factor Tu domain 2 KQ254_17505 PF00009 Elongation factor Tu GTP binding domain KQ254_17510 PF03764 Elongation factor G, domain IV KQ254_17510 PF14492 Elongation Factor G, domain II KQ254_17510 PF00679 Elongation factor G C-terminus KQ254_17510 PF03144 Elongation factor Tu domain 2 KQ254_17510 PF00009 Elongation factor Tu GTP binding domain KQ254_17515 PF00177 Ribosomal protein S7p/S5e KQ254_17520 PF00164 Ribosomal protein S12/S23 KQ254_17530 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ254_17530 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ254_17535 PF03653 Uncharacterised protein family (UPF0093) KQ254_17540 PF05726 Pirin C-terminal cupin domain KQ254_17540 PF02678 Pirin KQ254_17550 PF02540 NAD synthase KQ254_17550 PF00795 Carbon-nitrogen hydrolase KQ254_17565 PF00175 Oxidoreductase NAD-binding domain KQ254_17565 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ254_17565 PF00970 Oxidoreductase FAD-binding domain KQ254_17570 PF00171 Aldehyde dehydrogenase family KQ254_17575 PF00355 Rieske [2Fe-2S] domain KQ254_17575 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ254_17580 PF07859 alpha/beta hydrolase fold KQ254_17585 PF02028 BCCT, betaine/carnitine/choline family transporter KQ254_17590 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ254_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_17595 PF03466 LysR substrate binding domain KQ254_17615 PF00037 4Fe-4S binding domain KQ254_17620 PF01467 Cytidylyltransferase-like KQ254_17625 PF13356 Arm DNA-binding domain KQ254_17625 PF00589 Phage integrase family KQ254_17690 PF03869 Arc-like DNA binding domain KQ254_17925 PF01668 SmpB protein KQ254_17930 PF03358 NADPH-dependent FMN reductase KQ254_17935 PF02578 Multi-copper polyphenol oxidoreductase laccase KQ254_17940 PF00849 RNA pseudouridylate synthase KQ254_17940 PF01479 S4 domain KQ254_17945 PF13525 Outer membrane lipoprotein KQ254_17950 PF10410 DnaB-helicase binding domain of primase KQ254_17950 PF08278 DNA primase DnaG DnaB-binding KQ254_17950 PF08275 DNA primase catalytic core, N-terminal domain KQ254_17950 PF01807 CHC2 zinc finger KQ254_17955 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KQ254_17955 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KQ254_17955 PF01488 Shikimate / quinate 5-dehydrogenase KQ254_17970 PF03550 Outer membrane lipoprotein LolB KQ254_17975 PF00288 GHMP kinases N terminal domain KQ254_17975 PF08544 GHMP kinases C terminal KQ254_18000 PF14572 Phosphoribosyl synthetase-associated domain KQ254_18000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KQ254_18005 PF01386 Ribosomal L25p family KQ254_18010 PF01195 Peptidyl-tRNA hydrolase KQ254_18015 PF02261 Aspartate decarboxylase KQ254_18030 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KQ254_18040 PF02581 Thiamine monophosphate synthase KQ254_18040 PF03070 TENA/THI-4/PQQC family KQ254_18040 PF08543 Phosphomethylpyrimidine kinase KQ254_18045 PF04972 BON domain KQ254_18045 PF01476 LysM domain KQ254_18050 PF00550 Phosphopantetheine attachment site KQ254_18060 PF00698 Acyl transferase domain KQ254_18065 PF01783 Ribosomal L32p protein family KQ254_18070 PF02620 Large ribosomal RNA subunit accumulation protein YceD KQ254_18075 PF04315 Elongation factor P hydroxylase KQ254_18080 PF01300 Telomere recombination KQ254_18085 PF02616 Segregation and condensation protein ScpA KQ254_18090 PF04079 Segregation and condensation complex subunit ScpB KQ254_18095 PF00849 RNA pseudouridylate synthase KQ254_18095 PF01479 S4 domain KQ254_18110 PF00155 Aminotransferase class I and II KQ254_18115 PF00202 Aminotransferase class-III KQ254_18115 PF06968 Biotin and Thiamin Synthesis associated domain KQ254_18115 PF04055 Radical SAM superfamily KQ254_18120 PF12697 Alpha/beta hydrolase family KQ254_18120 PF08241 Methyltransferase domain KQ254_18125 PF02358 Trehalose-phosphatase KQ254_18130 PF00982 Glycosyltransferase family 20 KQ254_18135 PF07690 Major Facilitator Superfamily KQ254_18140 PF00210 Ferritin-like domain KQ254_18145 PF00533 BRCA1 C Terminus (BRCT) domain KQ254_18145 PF01653 NAD-dependent DNA ligase adenylation domain KQ254_18145 PF03120 NAD-dependent DNA ligase OB-fold domain KQ254_18145 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KQ254_18145 PF12826 Helix-hairpin-helix motif KQ254_18155 PF02463 RecF/RecN/SMC N terminal domain KQ254_18155 PF06470 SMC proteins Flexible Hinge Domain KQ254_18165 PF01925 Sulfite exporter TauE/SafE KQ254_18175 PF03309 Type III pantothenate kinase KQ254_18180 PF00448 SRP54-type protein, GTPase domain KQ254_18180 PF02881 SRP54-type protein, helical bundle domain KQ254_18180 PF02978 Signal peptide binding domain KQ254_18190 PF01207 Dihydrouridine synthase (Dus) KQ254_18220 PF00692 dUTPase KQ254_18235 PF01048 Phosphorylase superfamily KQ254_18240 PF10609 NUBPL iron-transfer P-loop NTPase KQ254_18250 PF09334 tRNA synthetases class I (M) KQ254_18250 PF01588 Putative tRNA binding domain KQ254_18275 PF13533 Biotin-lipoyl like KQ254_18280 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_18295 PF05552 Conserved TM helix KQ254_18310 PF00175 Oxidoreductase NAD-binding domain KQ254_18310 PF00970 Oxidoreductase FAD-binding domain KQ254_18315 PF03466 LysR substrate binding domain KQ254_18315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_18320 PF00313 'Cold-shock' DNA-binding domain KQ254_18330 PF00361 Proton-conducting membrane transporter KQ254_18335 PF00361 Proton-conducting membrane transporter KQ254_18340 PF00361 Proton-conducting membrane transporter KQ254_18340 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KQ254_18345 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KQ254_18350 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KQ254_18355 PF12838 4Fe-4S dicluster domain KQ254_18360 PF00146 NADH dehydrogenase KQ254_18365 PF00384 Molybdopterin oxidoreductase KQ254_18365 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KQ254_18365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ254_18370 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KQ254_18370 PF10531 SLBB domain KQ254_18370 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KQ254_18380 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KQ254_18380 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KQ254_18385 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KQ254_18390 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KQ254_18395 PF00990 Diguanylate cyclase, GGDEF domain KQ254_18395 PF17158 Membrane-associated sensor, integral membrane domain KQ254_18405 PF00672 HAMP domain KQ254_18405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_18405 PF00512 His Kinase A (phospho-acceptor) domain KQ254_18410 PF00072 Response regulator receiver domain KQ254_18410 PF00486 Transcriptional regulatory protein, C terminal KQ254_18420 PF02867 Ribonucleotide reductase, barrel domain KQ254_18420 PF00317 Ribonucleotide reductase, all-alpha domain KQ254_18420 PF03477 ATP cone domain KQ254_18430 PF00268 Ribonucleotide reductase, small chain KQ254_18435 PF13737 Transposase DDE domain KQ254_18445 PF01613 Flavin reductase like domain KQ254_18450 PF08267 Cobalamin-independent synthase, N-terminal domain KQ254_18450 PF01717 Cobalamin-independent synthase, Catalytic domain KQ254_18460 PF03466 LysR substrate binding domain KQ254_18460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_18465 PF01810 LysE type translocator KQ254_18470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_18470 PF03466 LysR substrate binding domain KQ254_18475 PF07690 Major Facilitator Superfamily KQ254_18485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_18485 PF03466 LysR substrate binding domain KQ254_18490 PF14537 Cytochrome c3 KQ254_18490 PF00890 FAD binding domain KQ254_18505 PF17932 Tetracyclin repressor-like, C-terminal domain KQ254_18505 PF00440 Bacterial regulatory proteins, tetR family KQ254_18510 PF02515 CoA-transferase family III KQ254_18515 PF07690 Major Facilitator Superfamily KQ254_18520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ254_18520 PF02770 Acyl-CoA dehydrogenase, middle domain KQ254_18520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ254_18525 PF03466 LysR substrate binding domain KQ254_18525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_18560 PF02445 Quinolinate synthetase A protein KQ254_18565 PF01960 ArgJ family KQ254_18570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ254_18570 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KQ254_18575 PF00893 Small Multidrug Resistance protein KQ254_18585 PF05275 Copper resistance protein B precursor (CopB) KQ254_18590 PF00394 Multicopper oxidase KQ254_18590 PF07731 Multicopper oxidase KQ254_18590 PF07732 Multicopper oxidase KQ254_18605 PF00834 Ribulose-phosphate 3 epimerase family KQ254_18615 PF00756 Putative esterase KQ254_18625 PF04445 Putative SAM-dependent methyltransferase KQ254_18630 PF00814 Glycoprotease family KQ254_18635 PF00132 Bacterial transferase hexapeptide (six repeats) KQ254_18640 PF00293 NUDIX domain KQ254_18650 PF00872 Transposase, Mutator family KQ254_18665 PF04715 Anthranilate synthase component I, N terminal region KQ254_18665 PF00425 chorismate binding enzyme KQ254_18670 PF00155 Aminotransferase class I and II KQ254_18675 PF00815 Histidinol dehydrogenase KQ254_18680 PF01634 ATP phosphoribosyltransferase KQ254_18685 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KQ254_18690 PF01722 BolA-like protein KQ254_18695 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KQ254_18700 PF00309 Sigma-54 factor, Activator interacting domain (AID) KQ254_18700 PF04552 Sigma-54, DNA binding domain KQ254_18700 PF04963 Sigma-54 factor, core binding domain KQ254_18745 PF00795 Carbon-nitrogen hydrolase KQ254_18755 PF01047 MarR family KQ254_18760 PF02566 OsmC-like protein KQ254_18765 PF00437 Type II/IV secretion system protein KQ254_18785 PF01367 5'-3' exonuclease, C-terminal SAM fold KQ254_18785 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KQ254_18785 PF00476 DNA polymerase family A KQ254_18785 PF01612 3'-5' exonuclease KQ254_18790 PF02325 YGGT family KQ254_18795 PF14748 Pyrroline-5-carboxylate reductase dimerisation KQ254_18795 PF03807 NADP oxidoreductase coenzyme F420-dependent KQ254_18800 PF01171 PP-loop family KQ254_18800 PF09179 TilS substrate binding domain KQ254_18800 PF11734 TilS substrate C-terminal domain KQ254_18805 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KQ254_18810 PF02541 Ppx/GppA phosphatase family KQ254_18815 PF00085 Thioredoxin KQ254_18820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ254_18820 PF07498 Rho termination factor, N-terminal domain KQ254_18820 PF07497 Rho termination factor, RNA-binding domain KQ254_18835 PF00216 Bacterial DNA-binding protein KQ254_18840 PF01588 Putative tRNA binding domain KQ254_18840 PF03147 Ferredoxin-fold anticodon binding domain KQ254_18840 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KQ254_18840 PF03483 B3/4 domain KQ254_18840 PF03484 tRNA synthetase B5 domain KQ254_18845 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KQ254_18845 PF01409 tRNA synthetases class II core domain (F) KQ254_18865 PF00453 Ribosomal protein L20 KQ254_18870 PF01632 Ribosomal protein L35 KQ254_18875 PF07690 Major Facilitator Superfamily KQ254_18880 PF09335 SNARE associated Golgi protein KQ254_18885 PF00043 Glutathione S-transferase, C-terminal domain KQ254_18885 PF02798 Glutathione S-transferase, N-terminal domain KQ254_18890 PF00707 Translation initiation factor IF-3, C-terminal domain KQ254_18890 PF05198 Translation initiation factor IF-3, N-terminal domain KQ254_18895 PF03129 Anticodon binding domain KQ254_18895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ254_18895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KQ254_18895 PF02824 TGS domain KQ254_18900 PF13193 AMP-binding enzyme C-terminal domain KQ254_18900 PF00501 AMP-binding enzyme KQ254_18905 PF04751 Protein of unknown function (DUF615) KQ254_18910 PF00381 PTS HPr component phosphorylation site KQ254_18915 PF03668 P-loop ATPase protein family KQ254_18920 PF02569 Pantoate-beta-alanine ligase KQ254_18925 PF02548 Ketopantoate hydroxymethyltransferase KQ254_18930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KQ254_18935 PF01743 Poly A polymerase head domain KQ254_18935 PF12626 Polymerase A arginine-rich C-terminus KQ254_18935 PF12627 Probable RNA and SrmB- binding site of polymerase A KQ254_18945 PF03819 MazG nucleotide pyrophosphohydrolase domain KQ254_18955 PF13291 ACT domain KQ254_18955 PF04607 Region found in RelA / SpoT proteins KQ254_18955 PF02824 TGS domain KQ254_18960 PF05958 tRNA (Uracil-5-)-methyltransferase KQ254_18970 PF00291 Pyridoxal-phosphate dependent enzyme KQ254_18975 PF00672 HAMP domain KQ254_18975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ254_18975 PF00512 His Kinase A (phospho-acceptor) domain KQ254_18975 PF01627 Hpt domain KQ254_18975 PF00072 Response regulator receiver domain KQ254_18975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KQ254_18980 PF00378 Enoyl-CoA hydratase/isomerase KQ254_18985 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ254_18985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ254_18990 PF01261 Xylose isomerase-like TIM barrel KQ254_19000 PF00106 short chain dehydrogenase KQ254_19005 PF02233 NAD(P) transhydrogenase beta subunit KQ254_19010 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KQ254_19015 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KQ254_19015 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KQ254_19020 PF00892 EamA-like transporter family KQ254_19030 PF07690 Major Facilitator Superfamily KQ254_19035 PF01207 Dihydrouridine synthase (Dus) KQ254_19045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ254_19045 PF03466 LysR substrate binding domain KQ254_19055 PF00899 ThiF family KQ254_19060 PF00330 Aconitase family (aconitate hydratase) KQ254_19060 PF00694 Aconitase C-terminal domain KQ254_19065 PF01026 TatD related DNase KQ254_19080 PF03144 Elongation factor Tu domain 2 KQ254_19080 PF00009 Elongation factor Tu GTP binding domain KQ254_19080 PF16658 Class II release factor RF3, C-terminal domain KQ254_19090 PF13737 Transposase DDE domain KQ254_19100 PF00717 Peptidase S24-like KQ254_19100 PF01726 LexA DNA binding domain KQ254_19105 PF00817 impB/mucB/samB family KQ254_19105 PF11799 impB/mucB/samB family C-terminal domain KQ254_19105 PF11798 IMS family HHH motif KQ254_19105 PF13438 Domain of unknown function (DUF4113) KQ254_19135 PF02661 Fic/DOC family KQ254_19155 PF00245 Alkaline phosphatase KQ254_19170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KQ254_19180 PF13610 DDE domain KQ254_19215 PF03743 Bacterial conjugation TrbI-like protein KQ254_19230 PF13356 Arm DNA-binding domain KQ254_19230 PF14659 Phage integrase, N-terminal SAM-like domain KQ254_19230 PF00589 Phage integrase family KQ254_19240 PF00809 Pterin binding enzyme KQ254_19255 PF13610 DDE domain KQ254_19260 PF11799 impB/mucB/samB family C-terminal domain KQ254_19260 PF00817 impB/mucB/samB family KQ254_19260 PF13438 Domain of unknown function (DUF4113) KQ254_19260 PF11798 IMS family HHH motif KQ254_19265 PF00717 Peptidase S24-like KQ254_19295 PF02522 Aminoglycoside 3-N-acetyltransferase KQ254_19300 PF13610 DDE domain KQ254_19320 PF13936 Helix-turn-helix domain KQ254_19320 PF00665 Integrase core domain KQ254_19325 PF01636 Phosphotransferase enzyme family KQ254_19330 PF13936 Helix-turn-helix domain KQ254_19330 PF00665 Integrase core domain KQ254_19355 PF01636 Phosphotransferase enzyme family KQ254_19360 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase KQ254_19380 PF13610 DDE domain KQ254_19400 PF13356 Arm DNA-binding domain KQ254_19400 PF00589 Phage integrase family KQ254_19425 PF13610 DDE domain KQ254_19430 PF01051 Initiator Replication protein KQ254_19445 PF02796 Helix-turn-helix domain of resolvase KQ254_19445 PF00239 Resolvase, N terminal domain KQ254_19450 PF00313 'Cold-shock' DNA-binding domain KQ254_19480 PF12833 Helix-turn-helix domain KQ254_19490 PF00905 Penicillin binding protein transpeptidase domain KQ254_19495 PF13610 DDE domain KQ254_19515 PF07715 TonB-dependent Receptor Plug Domain KQ254_19515 PF00593 TonB dependent receptor KQ254_19570 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system KQ254_19590 PF03389 MobA/MobL family KQ254_19595 PF01051 Initiator Replication protein KQ254_19610 PF13610 DDE domain KQ254_19625 PF13610 DDE domain