locus-tag class description KQ255_00005 PF00324 Amino acid permease KQ255_00015 PF08241 Methyltransferase domain KQ255_00035 PF13614 AAA domain KQ255_00040 PF01594 AI-2E family transporter KQ255_00045 PF00080 Copper/zinc superoxide dismutase (SODC) KQ255_00050 PF12805 FUSC-like inner membrane protein yccS KQ255_00055 PF07690 Major Facilitator Superfamily KQ255_00065 PF02525 Flavodoxin-like fold KQ255_00070 PF03992 Antibiotic biosynthesis monooxygenase KQ255_00080 PF02913 FAD linked oxidases, C-terminal domain KQ255_00080 PF01565 FAD binding domain KQ255_00085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ255_00085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ255_00090 PF00892 EamA-like transporter family KQ255_00095 PF00892 EamA-like transporter family KQ255_00105 PF01925 Sulfite exporter TauE/SafE KQ255_00110 PF09157 Pseudouridine synthase II TruB, C-terminal KQ255_00110 PF01509 TruB family pseudouridylate synthase (N terminal domain) KQ255_00110 PF16198 tRNA pseudouridylate synthase B C-terminal domain KQ255_00115 PF03280 Proteobacterial lipase chaperone protein KQ255_00120 PF00561 alpha/beta hydrolase fold KQ255_00125 PF01245 Ribosomal protein L19 KQ255_00130 PF01746 tRNA (Guanine-1)-methyltransferase KQ255_00135 PF05239 PRC-barrel domain KQ255_00135 PF01782 RimM N-terminal domain KQ255_00140 PF00886 Ribosomal protein S16 KQ255_00180 PF02401 LytB protein KQ255_00185 PF00625 Guanylate kinase KQ255_00190 PF01192 RNA polymerase Rpb6 KQ255_00200 PF02824 TGS domain KQ255_00200 PF04607 Region found in RelA / SpoT proteins KQ255_00200 PF13291 ACT domain KQ255_00205 PF01042 Endoribonuclease L-PSP KQ255_00210 PF04324 BFD-like [2Fe-2S] binding domain KQ255_00215 PF00210 Ferritin-like domain KQ255_00220 PF15864 Protein glycosylation ligase KQ255_00220 PF04932 O-Antigen ligase KQ255_00220 PF11846 Virulence factor membrane-bound polymerase, C-terminal KQ255_00225 PF07963 Prokaryotic N-terminal methylation motif KQ255_00225 PF00114 Pilin (bacterial filament) KQ255_00235 PF04536 TPM domain KQ255_00240 PF04011 LemA family KQ255_00250 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_00250 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KQ255_00255 PF04898 Glutamate synthase central domain KQ255_00255 PF01493 GXGXG motif KQ255_00255 PF01645 Conserved region in glutamate synthase KQ255_00255 PF00310 Glutamine amidotransferases class-II KQ255_00265 PF01761 3-dehydroquinate synthase KQ255_00270 PF01202 Shikimate kinase KQ255_00275 PF07660 Secretin and TonB N terminus short domain KQ255_00275 PF11741 AMIN domain KQ255_00275 PF00263 Bacterial type II and III secretion system protein KQ255_00275 PF03958 Bacterial type II/III secretion system short domain KQ255_00285 PF04350 Pilus assembly protein, PilO KQ255_00290 PF05137 Fimbrial assembly protein (PilN) KQ255_00295 PF11104 Type IV pilus assembly protein PilM; KQ255_00300 PF17092 Penicillin-binding protein OB-like domain KQ255_00300 PF00912 Transglycosylase KQ255_00300 PF00905 Penicillin binding protein transpeptidase domain KQ255_00305 PF13847 Methyltransferase domain KQ255_00315 PF00953 Glycosyl transferase family 4 KQ255_00320 PF08245 Mur ligase middle domain KQ255_00320 PF02875 Mur ligase family, glutamate ligase domain KQ255_00320 PF01225 Mur ligase family, catalytic domain KQ255_00325 PF02875 Mur ligase family, glutamate ligase domain KQ255_00325 PF08245 Mur ligase middle domain KQ255_00325 PF01225 Mur ligase family, catalytic domain KQ255_00330 PF00905 Penicillin binding protein transpeptidase domain KQ255_00330 PF03717 Penicillin-binding Protein dimerisation domain KQ255_00340 PF01795 MraW methylase family KQ255_00355 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ255_00370 PF00324 Amino acid permease KQ255_00400 PF01545 Cation efflux family KQ255_00405 PF00873 AcrB/AcrD/AcrF family KQ255_00410 PF00529 HlyD membrane-fusion protein of T1SS KQ255_00410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ255_00435 PF00005 ABC transporter KQ255_00435 PF12848 ABC transporter KQ255_00440 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ255_00445 PF00106 short chain dehydrogenase KQ255_00450 PF00916 Sulfate permease family KQ255_00450 PF01740 STAS domain KQ255_00455 PF17674 HHH domain KQ255_00455 PF00575 S1 RNA binding domain KQ255_00455 PF09371 Tex-like protein N-terminal domain KQ255_00455 PF16921 Tex protein YqgF-like domain KQ255_00460 PF00072 Response regulator receiver domain KQ255_00460 PF00486 Transcriptional regulatory protein, C terminal KQ255_00465 PF00512 His Kinase A (phospho-acceptor) domain KQ255_00465 PF00672 HAMP domain KQ255_00465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_00475 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KQ255_00475 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KQ255_00480 PF00583 Acetyltransferase (GNAT) family KQ255_00500 PF00475 Imidazoleglycerol-phosphate dehydratase KQ255_00505 PF00117 Glutamine amidotransferase class-I KQ255_00520 PF00977 Histidine biosynthesis protein KQ255_00545 PF01636 Phosphotransferase enzyme family KQ255_00550 PF00977 Histidine biosynthesis protein KQ255_00565 PF00230 Major intrinsic protein KQ255_00595 PF02705 K+ potassium transporter KQ255_00605 PF13302 Acetyltransferase (GNAT) domain KQ255_00615 PF02525 Flavodoxin-like fold KQ255_00620 PF01638 HxlR-like helix-turn-helix KQ255_00635 PF01638 HxlR-like helix-turn-helix KQ255_00650 PF02311 AraC-like ligand binding domain KQ255_00650 PF12833 Helix-turn-helix domain KQ255_00655 PF00248 Aldo/keto reductase family KQ255_00675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_00675 PF03466 LysR substrate binding domain KQ255_00680 PF07690 Major Facilitator Superfamily KQ255_00700 PF01593 Flavin containing amine oxidoreductase KQ255_00705 PF02678 Pirin KQ255_00705 PF05726 Pirin C-terminal cupin domain KQ255_00710 PF00857 Isochorismatase family KQ255_00715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_00720 PF00171 Aldehyde dehydrogenase family KQ255_00725 PF00202 Aminotransferase class-III KQ255_00730 PF00392 Bacterial regulatory proteins, gntR family KQ255_00730 PF00155 Aminotransferase class I and II KQ255_00735 PF00324 Amino acid permease KQ255_00745 PF03591 AzlC protein KQ255_00755 PF00436 Single-strand binding protein family KQ255_00760 PF07690 Major Facilitator Superfamily KQ255_00770 PF08543 Phosphomethylpyrimidine kinase KQ255_00770 PF02581 Thiamine monophosphate synthase KQ255_00770 PF03070 TENA/THI-4/PQQC family KQ255_00775 PF06942 GlpM protein KQ255_00785 PF00107 Zinc-binding dehydrogenase KQ255_00785 PF08240 Alcohol dehydrogenase GroES-like domain KQ255_00790 PF00440 Bacterial regulatory proteins, tetR family KQ255_00790 PF16925 Tetracyclin repressor-like, C-terminal domain KQ255_00795 PF00005 ABC transporter KQ255_00795 PF17755 UvrA DNA-binding domain KQ255_00795 PF17760 UvrA interaction domain KQ255_00800 PF00990 Diguanylate cyclase, GGDEF domain KQ255_00810 PF02028 BCCT, betaine/carnitine/choline family transporter KQ255_00820 PF00474 Sodium:solute symporter family KQ255_00825 PF04341 Protein of unknown function, DUF485 KQ255_00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_00830 PF00072 Response regulator receiver domain KQ255_00830 PF01627 Hpt domain KQ255_00830 PF00512 His Kinase A (phospho-acceptor) domain KQ255_00830 PF00672 HAMP domain KQ255_00840 PF00072 Response regulator receiver domain KQ255_00840 PF00196 Bacterial regulatory proteins, luxR family KQ255_00845 PF03358 NADPH-dependent FMN reductase KQ255_00850 PF00296 Luciferase-like monooxygenase KQ255_00855 PF01037 Lrp/AsnC ligand binding domain KQ255_00860 PF00857 Isochorismatase family KQ255_00865 PF13193 AMP-binding enzyme C-terminal domain KQ255_00865 PF00501 AMP-binding enzyme KQ255_00865 PF16177 Acetyl-coenzyme A synthetase N-terminus KQ255_00875 PF00924 Mechanosensitive ion channel KQ255_00880 PF04452 RNA methyltransferase KQ255_00885 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KQ255_00890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ255_00910 PF01368 DHH family KQ255_00910 PF02272 DHHA1 domain KQ255_00910 PF17768 RecJ OB domain KQ255_00915 PF01243 Pyridoxamine 5'-phosphate oxidase KQ255_00915 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KQ255_00920 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ255_00920 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ255_00920 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ255_00920 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ255_00925 PF00478 IMP dehydrogenase / GMP reductase domain KQ255_00925 PF00571 CBS domain KQ255_00930 PF03692 Putative zinc- or iron-chelating domain KQ255_00935 PF00258 Flavodoxin KQ255_00935 PF01613 Flavin reductase like domain KQ255_00940 PF07715 TonB-dependent Receptor Plug Domain KQ255_00940 PF00593 TonB dependent receptor KQ255_00945 PF01169 Uncharacterized protein family UPF0016 KQ255_00955 PF02817 e3 binding domain KQ255_00955 PF00364 Biotin-requiring enzyme KQ255_00955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ255_00960 PF00456 Transketolase, thiamine diphosphate binding domain KQ255_00960 PF17831 Pyruvate dehydrogenase E1 component middle domain KQ255_00965 PF01551 Peptidase family M23 KQ255_00975 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KQ255_00980 PF00091 Tubulin/FtsZ family, GTPase domain KQ255_00980 PF12327 FtsZ family, C-terminal domain KQ255_00985 PF02491 SHS2 domain inserted in FTSA KQ255_00990 PF08478 POTRA domain, FtsQ-type KQ255_00990 PF03799 Cell division protein FtsQ KQ255_00995 PF07478 D-ala D-ala ligase C-terminus KQ255_00995 PF01820 D-ala D-ala ligase N-terminus KQ255_01000 PF01225 Mur ligase family, catalytic domain KQ255_01000 PF02875 Mur ligase family, glutamate ligase domain KQ255_01000 PF08245 Mur ligase middle domain KQ255_01005 PF04101 Glycosyltransferase family 28 C-terminal domain KQ255_01005 PF03033 Glycosyltransferase family 28 N-terminal domain KQ255_01010 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KQ255_01010 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KQ255_01020 PF00593 TonB dependent receptor KQ255_01020 PF07715 TonB-dependent Receptor Plug Domain KQ255_01025 PF00156 Phosphoribosyl transferase domain KQ255_01030 PF03372 Endonuclease/Exonuclease/phosphatase family KQ255_01035 PF03960 ArsC family KQ255_01045 PF07859 alpha/beta hydrolase fold KQ255_01050 PF07694 5TMR of 5TMR-LYT KQ255_01050 PF00990 Diguanylate cyclase, GGDEF domain KQ255_01055 PF11412 Disulphide bond corrector protein DsbC KQ255_01055 PF02683 Cytochrome C biogenesis protein transmembrane region KQ255_01085 PF00576 HIUase/Transthyretin family KQ255_01090 PF00860 Permease family KQ255_01100 PF01494 FAD binding domain KQ255_01105 PF03561 Allantoicase repeat KQ255_01110 PF04115 Ureidoglycolate lyase KQ255_01115 PF00204 DNA gyrase B KQ255_01115 PF00986 DNA gyrase B subunit, carboxyl terminus KQ255_01115 PF01751 Toprim domain KQ255_01115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_01120 PF05728 Uncharacterised protein family (UPF0227) KQ255_01150 PF01510 N-acetylmuramoyl-L-alanine amidase KQ255_01150 PF01471 Putative peptidoglycan binding domain KQ255_01150 PF01476 LysM domain KQ255_01155 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KQ255_01155 PF04717 Type VI secretion system, phage-baseplate injector KQ255_01155 PF13296 Putative type VI secretion system Rhs element Vgr KQ255_01160 PF02600 Disulfide bond formation protein DsbB KQ255_01165 PF04262 Glutamate-cysteine ligase KQ255_01180 PF04286 Protein of unknown function (DUF445) KQ255_01185 PF00155 Aminotransferase class I and II KQ255_01190 PF01554 MatE KQ255_01195 PF00106 short chain dehydrogenase KQ255_01205 PF00072 Response regulator receiver domain KQ255_01205 PF00486 Transcriptional regulatory protein, C terminal KQ255_01210 PF11808 Phosphate regulon sensor protein PhoR KQ255_01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_01210 PF00512 His Kinase A (phospho-acceptor) domain KQ255_01210 PF00989 PAS fold KQ255_01220 PF02666 Phosphatidylserine decarboxylase KQ255_01225 PF00581 Rhodanese-like domain KQ255_01230 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KQ255_01230 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KQ255_01235 PF02580 D-Tyr-tRNA(Tyr) deacylase KQ255_01260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KQ255_01260 PF00925 GTP cyclohydrolase II KQ255_01265 PF00885 6,7-dimethyl-8-ribityllumazine synthase KQ255_01270 PF01029 NusB family KQ255_01275 PF02769 AIR synthase related protein, C-terminal domain KQ255_01275 PF00586 AIR synthase related protein, N-terminal domain KQ255_01280 PF04608 Phosphatidylglycerophosphatase A KQ255_01285 PF14602 Hexapeptide repeat of succinyl-transferase KQ255_01285 PF12804 MobA-like NTP transferase domain KQ255_01285 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_01290 PF01380 SIS domain KQ255_01320 PF13936 Helix-turn-helix domain KQ255_01320 PF00665 Integrase core domain KQ255_01330 PF00145 C-5 cytosine-specific DNA methylase KQ255_01340 PF01177 Asp/Glu/Hydantoin racemase KQ255_01355 PF00491 Arginase family KQ255_01360 PF01979 Amidohydrolase family KQ255_01365 PF00324 Amino acid permease KQ255_01370 PF00221 Aromatic amino acid lyase KQ255_01375 PF01175 Urocanase Rossmann-like domain KQ255_01375 PF17392 Urocanase C-terminal domain KQ255_01375 PF17391 Urocanase N-terminal domain KQ255_01380 PF05962 HutD KQ255_01385 PF07702 UTRA domain KQ255_01385 PF00392 Bacterial regulatory proteins, gntR family KQ255_01395 PF07683 Cobalamin synthesis protein cobW C-terminal domain KQ255_01395 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ255_01405 PF00324 Amino acid permease KQ255_01415 PF14497 Glutathione S-transferase, C-terminal domain KQ255_01415 PF02798 Glutathione S-transferase, N-terminal domain KQ255_01420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ255_01430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ255_01435 PF04463 Protein of unknown function (DUF523) KQ255_01440 PF01554 MatE KQ255_01445 PF01758 Sodium Bile acid symporter family KQ255_01450 PF00857 Isochorismatase family KQ255_01455 PF00701 Dihydrodipicolinate synthetase family KQ255_01465 PF01259 SAICAR synthetase KQ255_01475 PF01226 Formate/nitrite transporter KQ255_01480 PF00004 ATPase family associated with various cellular activities (AAA) KQ255_01480 PF16193 AAA C-terminal domain KQ255_01480 PF12002 MgsA AAA+ ATPase C terminal KQ255_01485 PF07995 Glucose / Sorbosone dehydrogenase KQ255_01490 PF03692 Putative zinc- or iron-chelating domain KQ255_01495 PF07043 Protein of unknown function (DUF1328) KQ255_01510 PF10576 Iron-sulfur binding domain of endonuclease III KQ255_01510 PF00633 Helix-hairpin-helix motif KQ255_01510 PF00730 HhH-GPD superfamily base excision DNA repair protein KQ255_01510 PF14815 NUDIX domain KQ255_01525 PF03352 Methyladenine glycosylase KQ255_01530 PF08240 Alcohol dehydrogenase GroES-like domain KQ255_01530 PF00107 Zinc-binding dehydrogenase KQ255_01535 PF00155 Aminotransferase class I and II KQ255_01535 PF00392 Bacterial regulatory proteins, gntR family KQ255_01550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_01550 PF03466 LysR substrate binding domain KQ255_01555 PF00248 Aldo/keto reductase family KQ255_01560 PF07690 Major Facilitator Superfamily KQ255_01570 PF01113 Dihydrodipicolinate reductase, N-terminus KQ255_01570 PF05173 Dihydrodipicolinate reductase, C-terminus KQ255_01580 PF00684 DnaJ central domain KQ255_01580 PF01556 DnaJ C terminal domain KQ255_01580 PF00226 DnaJ domain KQ255_01590 PF00873 AcrB/AcrD/AcrF family KQ255_01595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ255_01600 PF00440 Bacterial regulatory proteins, tetR family KQ255_01600 PF08361 MAATS-type transcriptional repressor, C-terminal region KQ255_01605 PF00311 Phosphoenolpyruvate carboxylase KQ255_01610 PF00860 Permease family KQ255_01615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_01615 PF03466 LysR substrate binding domain KQ255_01630 PF00920 Dehydratase family KQ255_01635 PF00551 Formyl transferase KQ255_01635 PF02911 Formyl transferase, C-terminal domain KQ255_01640 PF01189 16S rRNA methyltransferase RsmB/F KQ255_01640 PF01029 NusB family KQ255_01650 PF00209 Sodium:neurotransmitter symporter family KQ255_01695 PF00579 tRNA synthetases class I (W and Y) KQ255_01700 PF03702 Anhydro-N-acetylmuramic acid kinase KQ255_01705 PF00561 alpha/beta hydrolase fold KQ255_01710 PF01521 Iron-sulphur cluster biosynthesis KQ255_01730 PF12848 ABC transporter KQ255_01730 PF00005 ABC transporter KQ255_01735 PF09335 SNARE associated Golgi protein KQ255_01745 PF01751 Toprim domain KQ255_01745 PF18053 DNA gyrase B subunit insert domain KQ255_01745 PF00986 DNA gyrase B subunit, carboxyl terminus KQ255_01745 PF00204 DNA gyrase B KQ255_01745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_01750 PF02463 RecF/RecN/SMC N terminal domain KQ255_01755 PF02768 DNA polymerase III beta subunit, C-terminal domain KQ255_01755 PF02767 DNA polymerase III beta subunit, central domain KQ255_01755 PF00712 DNA polymerase III beta subunit, N-terminal domain KQ255_01765 PF11638 DnaA N-terminal domain KQ255_01765 PF08299 Bacterial dnaA protein helix-turn-helix KQ255_01765 PF00308 Bacterial dnaA protein KQ255_01770 PF00468 Ribosomal protein L34 KQ255_01775 PF00825 Ribonuclease P KQ255_01780 PF01809 Putative membrane protein insertion efficiency factor KQ255_01785 PF02096 60Kd inner membrane protein KQ255_01785 PF14849 YidC periplasmic domain KQ255_01790 PF01926 50S ribosome-binding GTPase KQ255_01790 PF12631 MnmE helical domain KQ255_01790 PF10396 GTP-binding protein TrmE N-terminus KQ255_01795 PF02583 Metal-sensitive transcriptional repressor KQ255_01800 PF01545 Cation efflux family KQ255_01800 PF16916 Dimerisation domain of Zinc Transporter KQ255_01805 PF10411 Disulfide bond isomerase protein N-terminus KQ255_01805 PF13098 Thioredoxin-like domain KQ255_01815 PF00156 Phosphoribosyl transferase domain KQ255_01820 PF01979 Amidohydrolase family KQ255_01825 PF00355 Rieske [2Fe-2S] domain KQ255_01830 PF03738 Glutathionylspermidine synthase preATP-grasp KQ255_01840 PF03741 Integral membrane protein TerC family KQ255_01845 PF01569 PAP2 superfamily KQ255_01855 PF01225 Mur ligase family, catalytic domain KQ255_01855 PF02875 Mur ligase family, glutamate ligase domain KQ255_01855 PF08245 Mur ligase middle domain KQ255_01865 PF00731 AIR carboxylase KQ255_01870 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KQ255_01870 PF02222 ATP-grasp domain KQ255_01875 PF13406 Transglycosylase SLT domain KQ255_01895 PF00012 Hsp70 protein KQ255_01900 PF01025 GrpE KQ255_01925 PF07859 alpha/beta hydrolase fold KQ255_01930 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KQ255_01970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ255_01975 PF01252 Signal peptidase (SPase) II KQ255_01980 PF06827 Zinc finger found in FPG and IleRS KQ255_01980 PF00133 tRNA synthetases class I (I, L, M and V) KQ255_01980 PF08264 Anticodon-binding domain of tRNA KQ255_01985 PF06574 FAD synthetase KQ255_01985 PF01687 Riboflavin kinase KQ255_01995 PF01048 Phosphorylase superfamily KQ255_02000 PF00440 Bacterial regulatory proteins, tetR family KQ255_02000 PF08362 YcdC-like protein, C-terminal region KQ255_02005 PF00005 ABC transporter KQ255_02010 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_02015 PF00296 Luciferase-like monooxygenase KQ255_02020 PF09084 NMT1/THI5 like KQ255_02025 PF09084 NMT1/THI5 like KQ255_02030 PF00696 Amino acid kinase family KQ255_02030 PF00583 Acetyltransferase (GNAT) family KQ255_02045 PF00106 short chain dehydrogenase KQ255_02050 PF13419 Haloacid dehalogenase-like hydrolase KQ255_02060 PF01323 DSBA-like thioredoxin domain KQ255_02065 PF00440 Bacterial regulatory proteins, tetR family KQ255_02065 PF08360 QacR-like protein, C-terminal region KQ255_02070 PF00440 Bacterial regulatory proteins, tetR family KQ255_02075 PF00175 Oxidoreductase NAD-binding domain KQ255_02080 PF00487 Fatty acid desaturase KQ255_02085 PF01138 3' exoribonuclease family, domain 1 KQ255_02085 PF03725 3' exoribonuclease family, domain 2 KQ255_02090 PF05506 Domain of unknown function (DUF756) KQ255_02090 PF04185 Phosphoesterase family KQ255_02100 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KQ255_02100 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KQ255_02105 PF01510 N-acetylmuramoyl-L-alanine amidase KQ255_02110 PF03023 Lipid II flippase MurJ KQ255_02115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ255_02115 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KQ255_02120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ255_02120 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KQ255_02125 PF13614 AAA domain KQ255_02125 PF13807 G-rich domain on putative tyrosine kinase KQ255_02125 PF02706 Chain length determinant protein KQ255_02130 PF01451 Low molecular weight phosphotyrosine protein phosphatase KQ255_02135 PF02563 Polysaccharide biosynthesis/export protein KQ255_02135 PF10531 SLBB domain KQ255_02135 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KQ255_02140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KQ255_02140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KQ255_02140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KQ255_02145 PF01370 NAD dependent epimerase/dehydratase family KQ255_02155 PF13439 Glycosyltransferase Family 4 KQ255_02155 PF00534 Glycosyl transferases group 1 KQ255_02165 PF01168 Alanine racemase, N-terminal domain KQ255_02165 PF00842 Alanine racemase, C-terminal domain KQ255_02165 PF01757 Acyltransferase family KQ255_02170 PF00534 Glycosyl transferases group 1 KQ255_02170 PF13477 Glycosyl transferase 4-like KQ255_02175 PF02397 Bacterial sugar transferase KQ255_02180 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_02180 PF17836 PglD N-terminal domain KQ255_02180 PF14602 Hexapeptide repeat of succinyl-transferase KQ255_02185 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KQ255_02190 PF02719 Polysaccharide biosynthesis protein KQ255_02195 PF00483 Nucleotidyl transferase KQ255_02200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KQ255_02200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KQ255_02200 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KQ255_02205 PF00342 Phosphoglucose isomerase KQ255_02210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ255_02210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ255_02210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ255_02210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ255_02215 PF02652 L-lactate permease KQ255_02220 PF07729 FCD domain KQ255_02220 PF00392 Bacterial regulatory proteins, gntR family KQ255_02225 PF01070 FMN-dependent dehydrogenase KQ255_02230 PF01565 FAD binding domain KQ255_02230 PF09330 D-lactate dehydrogenase, membrane binding KQ255_02235 PF00155 Aminotransferase class I and II KQ255_02240 PF07729 FCD domain KQ255_02240 PF00392 Bacterial regulatory proteins, gntR family KQ255_02250 PF00285 Citrate synthase, C-terminal domain KQ255_02255 PF00694 Aconitase C-terminal domain KQ255_02255 PF00330 Aconitase family (aconitate hydratase) KQ255_02305 PF00849 RNA pseudouridylate synthase KQ255_02320 PF00593 TonB dependent receptor KQ255_02320 PF07715 TonB-dependent Receptor Plug Domain KQ255_02330 PF01037 Lrp/AsnC ligand binding domain KQ255_02335 PF01266 FAD dependent oxidoreductase KQ255_02340 PF01168 Alanine racemase, N-terminal domain KQ255_02340 PF00842 Alanine racemase, C-terminal domain KQ255_02345 PF01042 Endoribonuclease L-PSP KQ255_02350 PF00324 Amino acid permease KQ255_02355 PF00324 Amino acid permease KQ255_02365 PF00171 Aldehyde dehydrogenase family KQ255_02370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ255_02370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ255_02375 PF00501 AMP-binding enzyme KQ255_02375 PF13193 AMP-binding enzyme C-terminal domain KQ255_02380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_02380 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_02380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_02385 PF00378 Enoyl-CoA hydratase/isomerase KQ255_02390 PF00378 Enoyl-CoA hydratase/isomerase KQ255_02395 PF00083 Sugar (and other) transporter KQ255_02395 PF07690 Major Facilitator Superfamily KQ255_02400 PF00765 Autoinducer synthase KQ255_02410 PF03472 Autoinducer binding domain KQ255_02410 PF00196 Bacterial regulatory proteins, luxR family KQ255_02415 PF00501 AMP-binding enzyme KQ255_02420 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_02420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_02420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_02425 PF16197 Ketoacyl-synthetase C-terminal extension KQ255_02425 PF00975 Thioesterase domain KQ255_02425 PF08242 Methyltransferase domain KQ255_02425 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ255_02425 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ255_02425 PF00550 Phosphopantetheine attachment site KQ255_02425 PF14765 Polyketide synthase dehydratase KQ255_02430 PF00501 AMP-binding enzyme KQ255_02430 PF00975 Thioesterase domain KQ255_02430 PF00550 Phosphopantetheine attachment site KQ255_02430 PF00668 Condensation domain KQ255_02430 PF13193 AMP-binding enzyme C-terminal domain KQ255_02445 PF12697 Alpha/beta hydrolase family KQ255_02450 PF01648 4'-phosphopantetheinyl transferase superfamily KQ255_02465 PF01722 BolA-like protein KQ255_02475 PF13614 AAA domain KQ255_02490 PF09335 SNARE associated Golgi protein KQ255_02495 PF07681 DoxX KQ255_02500 PF04286 Protein of unknown function (DUF445) KQ255_02505 PF00117 Glutamine amidotransferase class-I KQ255_02505 PF00958 GMP synthase C terminal domain KQ255_02505 PF02540 NAD synthase KQ255_02510 PF13427 Domain of unknown function (DUF4111) KQ255_02510 PF01909 Nucleotidyltransferase domain KQ255_02515 PF03551 Transcriptional regulator PadR-like family KQ255_02525 PF05726 Pirin C-terminal cupin domain KQ255_02525 PF02678 Pirin KQ255_02545 PF00750 tRNA synthetases class I (R) KQ255_02545 PF05746 DALR anticodon binding domain KQ255_02545 PF03485 Arginyl tRNA synthetase N terminal domain KQ255_02550 PF03949 Malic enzyme, NAD binding domain KQ255_02550 PF00390 Malic enzyme, N-terminal domain KQ255_02555 PF04261 Dyp-type peroxidase family KQ255_02560 PF01810 LysE type translocator KQ255_02565 PF00950 ABC 3 transport family KQ255_02570 PF00005 ABC transporter KQ255_02590 PF00119 ATP synthase A chain KQ255_02595 PF00137 ATP synthase subunit C KQ255_02600 PF00430 ATP synthase B/B' CF(0) KQ255_02605 PF00213 ATP synthase delta (OSCP) subunit KQ255_02610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ255_02610 PF00306 ATP synthase alpha/beta chain, C terminal domain KQ255_02610 PF02874 ATP synthase alpha/beta family, beta-barrel domain KQ255_02615 PF00231 ATP synthase KQ255_02620 PF02874 ATP synthase alpha/beta family, beta-barrel domain KQ255_02620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ255_02625 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KQ255_02635 PF00255 Glutathione peroxidase KQ255_02645 PF07690 Major Facilitator Superfamily KQ255_02650 PF00440 Bacterial regulatory proteins, tetR family KQ255_02655 PF00892 EamA-like transporter family KQ255_02660 PF01300 Telomere recombination KQ255_02665 PF17782 DprA winged helix domain KQ255_02665 PF02481 DNA recombination-mediator protein A KQ255_02675 PF01327 Polypeptide deformylase KQ255_02700 PF00440 Bacterial regulatory proteins, tetR family KQ255_02735 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_02745 PF03358 NADPH-dependent FMN reductase KQ255_02765 PF04055 Radical SAM superfamily KQ255_02765 PF08497 Radical SAM N-terminal KQ255_02765 PF11842 Domain of unknown function (DUF3362) KQ255_02780 PF11798 IMS family HHH motif KQ255_02780 PF11799 impB/mucB/samB family C-terminal domain KQ255_02780 PF00817 impB/mucB/samB family KQ255_02790 PF07690 Major Facilitator Superfamily KQ255_02795 PF03641 Possible lysine decarboxylase KQ255_02800 PF03741 Integral membrane protein TerC family KQ255_02800 PF03471 Transporter associated domain KQ255_02805 PF02810 SEC-C motif KQ255_02810 PF03458 UPF0126 domain KQ255_02815 PF07690 Major Facilitator Superfamily KQ255_02820 PF03989 DNA gyrase C-terminal domain, beta-propeller KQ255_02820 PF00521 DNA gyrase/topoisomerase IV, subunit A KQ255_02825 PF00501 AMP-binding enzyme KQ255_02825 PF13193 AMP-binding enzyme C-terminal domain KQ255_02840 PF00719 Inorganic pyrophosphatase KQ255_02845 PF03573 outer membrane porin, OprD family KQ255_02860 PF00701 Dihydrodipicolinate synthetase family KQ255_02870 PF00155 Aminotransferase class I and II KQ255_02870 PF00392 Bacterial regulatory proteins, gntR family KQ255_02875 PF01078 Magnesium chelatase, subunit ChlI KQ255_02875 PF13335 Magnesium chelatase, subunit ChlI C-terminal KQ255_02885 PF00665 Integrase core domain KQ255_02910 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_02915 PF03358 NADPH-dependent FMN reductase KQ255_02920 PF01758 Sodium Bile acid symporter family KQ255_02930 PF01022 Bacterial regulatory protein, arsR family KQ255_02935 PF03960 ArsC family KQ255_02940 PF00582 Universal stress protein family KQ255_02945 PF13411 MerR HTH family regulatory protein KQ255_02955 PF01252 Signal peptidase (SPase) II KQ255_02970 PF01751 Toprim domain KQ255_02970 PF01396 Topoisomerase DNA binding C4 zinc finger KQ255_02970 PF01131 DNA topoisomerase KQ255_02995 PF00809 Pterin binding enzyme KQ255_03005 PF13610 DDE domain KQ255_03010 PF11809 Domain of unknown function (DUF3330) KQ255_03010 PF00563 EAL domain KQ255_03015 PF05052 MerE protein KQ255_03020 PF13411 MerR HTH family regulatory protein KQ255_03025 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_03025 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ255_03025 PF00403 Heavy-metal-associated domain KQ255_03030 PF03203 MerC mercury resistance protein KQ255_03035 PF00403 Heavy-metal-associated domain KQ255_03040 PF02411 MerT mercuric transport protein KQ255_03045 PF09278 MerR, DNA binding KQ255_03045 PF00376 MerR family regulatory protein KQ255_03055 PF02909 Tetracyclin repressor-like, C-terminal domain KQ255_03055 PF00440 Bacterial regulatory proteins, tetR family KQ255_03060 PF07690 Major Facilitator Superfamily KQ255_03065 PF00892 EamA-like transporter family KQ255_03085 PF00302 Chloramphenicol acetyltransferase KQ255_03095 PF01526 Tn3 transposase DDE domain KQ255_03095 PF13700 Domain of unknown function (DUF4158) KQ255_03105 PF13610 DDE domain KQ255_03110 PF01078 Magnesium chelatase, subunit ChlI KQ255_03110 PF13335 Magnesium chelatase, subunit ChlI C-terminal KQ255_03120 PF00543 Nitrogen regulatory protein P-II KQ255_03125 PF00909 Ammonium Transporter Family KQ255_03130 PF03477 ATP cone domain KQ255_03135 PF01872 RibD C-terminal domain KQ255_03135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KQ255_03145 PF00677 Lumazine binding domain KQ255_03165 PF02789 Cytosol aminopeptidase family, N-terminal domain KQ255_03165 PF00883 Cytosol aminopeptidase family, catalytic domain KQ255_03175 PF03739 Lipopolysaccharide export system permease LptF/LptG KQ255_03180 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KQ255_03180 PF01676 Metalloenzyme superfamily KQ255_03185 PF00595 PDZ domain KQ255_03185 PF03572 Peptidase family S41 KQ255_03190 PF00072 Response regulator receiver domain KQ255_03190 PF00158 Sigma-54 interaction domain KQ255_03190 PF02954 Bacterial regulatory protein, Fis family KQ255_03195 PF00512 His Kinase A (phospho-acceptor) domain KQ255_03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_03200 PF00196 Bacterial regulatory proteins, luxR family KQ255_03200 PF00072 Response regulator receiver domain KQ255_03205 PF00768 D-alanyl-D-alanine carboxypeptidase KQ255_03210 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_03215 PF01842 ACT domain KQ255_03215 PF00742 Homoserine dehydrogenase KQ255_03215 PF03447 Homoserine dehydrogenase, NAD binding domain KQ255_03220 PF10411 Disulfide bond isomerase protein N-terminus KQ255_03220 PF13098 Thioredoxin-like domain KQ255_03225 PF00589 Phage integrase family KQ255_03225 PF02899 Phage integrase, N-terminal SAM-like domain KQ255_03235 PF07670 Nucleoside recognition KQ255_03235 PF07664 Ferrous iron transport protein B C terminus KQ255_03235 PF02421 Ferrous iron transport protein B KQ255_03245 PF02875 Mur ligase family, glutamate ligase domain KQ255_03245 PF08245 Mur ligase middle domain KQ255_03250 PF01098 Cell cycle protein KQ255_03255 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ255_03260 PF01258 Prokaryotic dksA/traR C4-type zinc finger KQ255_03265 PF00149 Calcineurin-like phosphoesterase KQ255_03270 PF00293 NUDIX domain KQ255_03275 PF13667 ThiC-associated domain KQ255_03275 PF01964 Radical SAM ThiC family KQ255_03290 PF00892 EamA-like transporter family KQ255_03295 PF02321 Outer membrane efflux protein KQ255_03300 PF01895 PhoU domain KQ255_03305 PF04362 Bacterial Fe(2+) trafficking KQ255_03310 PF14698 Argininosuccinate lyase C-terminal KQ255_03310 PF00206 Lyase KQ255_03315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_03315 PF06580 Histidine kinase KQ255_03315 PF07694 5TMR of 5TMR-LYT KQ255_03320 PF04397 LytTr DNA-binding domain KQ255_03320 PF00072 Response regulator receiver domain KQ255_03325 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KQ255_03325 PF03900 Porphobilinogen deaminase, C-terminal domain KQ255_03350 PF00816 H-NS histone family KQ255_03365 PF00263 Bacterial type II and III secretion system protein KQ255_03365 PF03958 Bacterial type II/III secretion system short domain KQ255_03370 PF00498 FHA domain KQ255_03370 PF12401 Protein of unknown function (DUF2662) KQ255_03375 PF13419 Haloacid dehalogenase-like hydrolase KQ255_03380 PF04715 Anthranilate synthase component I, N terminal region KQ255_03380 PF00425 chorismate binding enzyme KQ255_03405 PF00009 Elongation factor Tu GTP binding domain KQ255_03405 PF03144 Elongation factor Tu domain 2 KQ255_03405 PF03143 Elongation factor Tu C-terminal domain KQ255_03415 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KQ255_03420 PF02357 Transcription termination factor nusG KQ255_03420 PF00467 KOW motif KQ255_03425 PF00298 Ribosomal protein L11, RNA binding domain KQ255_03425 PF03946 Ribosomal protein L11, N-terminal domain KQ255_03430 PF00687 Ribosomal protein L1p/L10e family KQ255_03435 PF00466 Ribosomal protein L10 KQ255_03440 PF00542 Ribosomal protein L7/L12 C-terminal domain KQ255_03440 PF16320 Ribosomal protein L7/L12 dimerisation domain KQ255_03445 PF10385 RNA polymerase beta subunit external 1 domain KQ255_03445 PF04563 RNA polymerase beta subunit KQ255_03445 PF04561 RNA polymerase Rpb2, domain 2 KQ255_03445 PF04565 RNA polymerase Rpb2, domain 3 KQ255_03445 PF00562 RNA polymerase Rpb2, domain 6 KQ255_03445 PF04560 RNA polymerase Rpb2, domain 7 KQ255_03450 PF04998 RNA polymerase Rpb1, domain 5 KQ255_03450 PF05000 RNA polymerase Rpb1, domain 4 KQ255_03450 PF00623 RNA polymerase Rpb1, domain 2 KQ255_03450 PF04997 RNA polymerase Rpb1, domain 1 KQ255_03450 PF04983 RNA polymerase Rpb1, domain 3 KQ255_03475 PF13726 Na+-H+ antiporter family KQ255_03475 PF03553 Na+/H+ antiporter family KQ255_03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_03490 PF00183 Hsp90 protein KQ255_03505 PF01323 DSBA-like thioredoxin domain KQ255_03515 PF00376 MerR family regulatory protein KQ255_03515 PF09278 MerR, DNA binding KQ255_03530 PF00108 Thiolase, N-terminal domain KQ255_03530 PF02803 Thiolase, C-terminal domain KQ255_03535 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ255_03535 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ255_03535 PF00378 Enoyl-CoA hydratase/isomerase KQ255_03555 PF02151 UvrB/uvrC motif KQ255_03555 PF08459 UvrC Helix-hairpin-helix N-terminal KQ255_03555 PF01541 GIY-YIG catalytic domain KQ255_03565 PF01066 CDP-alcohol phosphatidyltransferase KQ255_03570 PF02805 Metal binding domain of Ada KQ255_03570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ255_03570 PF12833 Helix-turn-helix domain KQ255_03570 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KQ255_03595 PF13533 Biotin-lipoyl like KQ255_03600 PF03652 Holliday junction resolvase KQ255_03605 PF02622 Uncharacterized ACR, COG1678 KQ255_03610 PF02463 RecF/RecN/SMC N terminal domain KQ255_03620 PF06865 Pyrimidine/purine nucleoside phosphorylase KQ255_03625 PF00588 SpoU rRNA Methylase family KQ255_03625 PF08032 RNA 2'-O ribose methyltransferase substrate binding KQ255_03635 PF01121 Dephospho-CoA kinase KQ255_03640 PF06750 Bacterial Peptidase A24 N-terminal domain KQ255_03640 PF01478 Type IV leader peptidase family KQ255_03645 PF00482 Type II secretion system (T2SS), protein F KQ255_03650 PF00437 Type II/IV secretion system protein KQ255_03650 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KQ255_03655 PF00121 Triosephosphate isomerase KQ255_03660 PF03840 Preprotein translocase SecG subunit KQ255_03680 PF17384 RimP C-terminal SH3 domain KQ255_03680 PF02576 RimP N-terminal domain KQ255_03685 PF13184 NusA-like KH domain KQ255_03685 PF08529 NusA N-terminal domain KQ255_03685 PF00575 S1 RNA binding domain KQ255_03690 PF08364 Bacterial translation initiation factor IF-2 associated region KQ255_03690 PF00009 Elongation factor Tu GTP binding domain KQ255_03690 PF11987 Translation-initiation factor 2 KQ255_03690 PF04760 Translation initiation factor IF-2, N-terminal region KQ255_03695 PF02033 Ribosome-binding factor A KQ255_03700 PF03334 Na+/H+ antiporter subunit KQ255_03705 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KQ255_03710 PF01899 Na+/H+ ion antiporter subunit KQ255_03715 PF00361 Proton-conducting membrane transporter KQ255_03720 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KQ255_03725 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KQ255_03725 PF00361 Proton-conducting membrane transporter KQ255_03725 PF13244 Domain of unknown function (DUF4040) KQ255_03725 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KQ255_03740 PF01502 Phosphoribosyl-AMP cyclohydrolase KQ255_03745 PF01494 FAD binding domain KQ255_03750 PF03109 ABC1 family KQ255_03760 PF01209 ubiE/COQ5 methyltransferase family KQ255_03770 PF03976 Polyphosphate kinase 2 (PPK2) KQ255_03780 PF17946 RecC C-terminal domain KQ255_03785 PF12705 PD-(D/E)XK nuclease superfamily KQ255_03785 PF00580 UvrD/REP helicase N-terminal domain KQ255_03785 PF13361 UvrD-like helicase C-terminal domain KQ255_03790 PF13538 UvrD-like helicase C-terminal domain KQ255_03795 PF00144 Beta-lactamase KQ255_03800 PF00312 Ribosomal protein S15 KQ255_03805 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KQ255_03805 PF00013 KH domain KQ255_03805 PF01138 3' exoribonuclease family, domain 1 KQ255_03805 PF03725 3' exoribonuclease family, domain 2 KQ255_03805 PF00575 S1 RNA binding domain KQ255_03810 PF01544 CorA-like Mg2+ transporter protein KQ255_03820 PF00226 DnaJ domain KQ255_03820 PF01556 DnaJ C terminal domain KQ255_03830 PF01430 Hsp33 protein KQ255_03835 PF00999 Sodium/hydrogen exchanger family KQ255_03835 PF02254 TrkA-N domain KQ255_03840 PF00270 DEAD/DEAH box helicase KQ255_03840 PF00271 Helicase conserved C-terminal domain KQ255_03840 PF17764 3′ DNA-binding domain (3′BD) KQ255_03840 PF18074 Primosomal protein N C-terminal domain KQ255_03840 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KQ255_03845 PF00482 Type II secretion system (T2SS), protein F KQ255_03850 PF08334 Type II secretion system (T2SS), protein G KQ255_03850 PF07963 Prokaryotic N-terminal methylation motif KQ255_03860 PF01588 Putative tRNA binding domain KQ255_03865 PF00795 Carbon-nitrogen hydrolase KQ255_03870 PF00571 CBS domain KQ255_03870 PF03471 Transporter associated domain KQ255_03875 PF01206 Sulfurtransferase TusA KQ255_03895 PF01177 Asp/Glu/Hydantoin racemase KQ255_03905 PF00762 Ferrochelatase KQ255_03910 PF00753 Metallo-beta-lactamase superfamily KQ255_03915 PF03884 DNA gyrase inhibitor YacG KQ255_03925 PF13247 4Fe-4S dicluster domain KQ255_03925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KQ255_03925 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_03935 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KQ255_03945 PF01197 Ribosomal protein L31 KQ255_03950 PF03109 ABC1 family KQ255_03955 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ255_03955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_03960 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ255_03960 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_03960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_03965 PF01554 MatE KQ255_03975 PF06969 HemN C-terminal domain KQ255_03975 PF04055 Radical SAM superfamily KQ255_03980 PF00106 short chain dehydrogenase KQ255_03985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_03985 PF03466 LysR substrate binding domain KQ255_04000 PF00501 AMP-binding enzyme KQ255_04000 PF13193 AMP-binding enzyme C-terminal domain KQ255_04005 PF12111 Polyribonucleotide phosphorylase C terminal KQ255_04005 PF10150 Ribonuclease E/G family KQ255_04005 PF00575 S1 RNA binding domain KQ255_04015 PF00849 RNA pseudouridylate synthase KQ255_04015 PF01479 S4 domain KQ255_04020 PF13419 Haloacid dehalogenase-like hydrolase KQ255_04025 PF13280 WYL domain KQ255_04025 PF08279 HTH domain KQ255_04030 PF02798 Glutathione S-transferase, N-terminal domain KQ255_04040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_04040 PF03466 LysR substrate binding domain KQ255_04045 PF12706 Beta-lactamase superfamily domain KQ255_04050 PF00141 Peroxidase KQ255_04055 PF02896 PEP-utilising enzyme, TIM barrel domain KQ255_04055 PF05524 PEP-utilising enzyme, N-terminal KQ255_04055 PF01590 GAF domain KQ255_04055 PF00391 PEP-utilising enzyme, mobile domain KQ255_04060 PF00293 NUDIX domain KQ255_04070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_04070 PF03466 LysR substrate binding domain KQ255_04080 PF00330 Aconitase family (aconitate hydratase) KQ255_04085 PF00694 Aconitase C-terminal domain KQ255_04095 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ255_04110 PF01176 Translation initiation factor 1A / IF-1 KQ255_04120 PF01416 tRNA pseudouridine synthase KQ255_04140 PF01118 Semialdehyde dehydrogenase, NAD binding domain KQ255_04140 PF02774 Semialdehyde dehydrogenase, dimerisation domain KQ255_04150 PF00375 Sodium:dicarboxylate symporter family KQ255_04160 PF03279 Bacterial lipid A biosynthesis acyltransferase KQ255_04165 PF01810 LysE type translocator KQ255_04170 PF16326 ABC transporter C-terminal domain KQ255_04170 PF12848 ABC transporter KQ255_04170 PF00005 ABC transporter KQ255_04175 PF04102 SlyX KQ255_04180 PF08240 Alcohol dehydrogenase GroES-like domain KQ255_04180 PF00107 Zinc-binding dehydrogenase KQ255_04185 PF01638 HxlR-like helix-turn-helix KQ255_04195 PF08272 Topoisomerase I zinc-ribbon-like KQ255_04195 PF01131 DNA topoisomerase KQ255_04195 PF01751 Toprim domain KQ255_04195 PF01396 Topoisomerase DNA binding C4 zinc finger KQ255_04210 PF00580 UvrD/REP helicase N-terminal domain KQ255_04210 PF13361 UvrD-like helicase C-terminal domain KQ255_04215 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KQ255_04235 PF02254 TrkA-N domain KQ255_04235 PF00999 Sodium/hydrogen exchanger family KQ255_04240 PF00471 Ribosomal protein L33 KQ255_04245 PF00830 Ribosomal L28 family KQ255_04250 PF00171 Aldehyde dehydrogenase family KQ255_04260 PF00551 Formyl transferase KQ255_04260 PF01842 ACT domain KQ255_04270 PF01618 MotA/TolQ/ExbB proton channel family KQ255_04280 PF01625 Peptide methionine sulfoxide reductase KQ255_04290 PF00186 Dihydrofolate reductase KQ255_04295 PF00303 Thymidylate synthase KQ255_04300 PF00665 Integrase core domain KQ255_04300 PF13936 Helix-turn-helix domain KQ255_04315 PF01790 Prolipoprotein diacylglyceryl transferase KQ255_04335 PF00902 Sec-independent protein translocase protein (TatC) KQ255_04340 PF02416 mttA/Hcf106 family KQ255_04345 PF02416 mttA/Hcf106 family KQ255_04355 PF01725 Ham1 family KQ255_04365 PF07021 Methionine biosynthesis protein MetW KQ255_04365 PF00561 alpha/beta hydrolase fold KQ255_04370 PF00561 alpha/beta hydrolase fold KQ255_04375 PF08502 LeuA allosteric (dimerisation) domain KQ255_04375 PF00682 HMGL-like KQ255_04380 PF18331 PKHD-type hydroxylase C-terminal domain KQ255_04380 PF13640 2OG-Fe(II) oxygenase superfamily KQ255_04385 PF00593 TonB dependent receptor KQ255_04385 PF07715 TonB-dependent Receptor Plug Domain KQ255_04390 PF05697 Bacterial trigger factor protein (TF) KQ255_04390 PF05698 Bacterial trigger factor protein (TF) C-terminus KQ255_04390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ255_04395 PF00574 Clp protease KQ255_04400 PF07724 AAA domain (Cdc48 subfamily) KQ255_04400 PF10431 C-terminal, D2-small domain, of ClpB protein KQ255_04400 PF06689 ClpX C4-type zinc finger KQ255_04415 PF05683 Fumarase C-terminus KQ255_04415 PF05681 Fumarate hydratase (Fumerase) KQ255_04420 PF01515 Phosphate acetyl/butaryl transferase KQ255_04420 PF07085 DRTGG domain KQ255_04425 PF00871 Acetokinase family KQ255_04430 PF00920 Dehydratase family KQ255_04435 PF01081 KDPG and KHG aldolase KQ255_04440 PF02447 GntP family permease KQ255_04445 PF01202 Shikimate kinase KQ255_04450 PF00171 Aldehyde dehydrogenase family KQ255_04455 PF00171 Aldehyde dehydrogenase family KQ255_04460 PF00561 alpha/beta hydrolase fold KQ255_04470 PF00933 Glycosyl hydrolase family 3 N terminal domain KQ255_04475 PF11818 C-terminal domain of tail specific protease (DUF3340) KQ255_04475 PF00595 PDZ domain KQ255_04475 PF03572 Peptidase family S41 KQ255_04475 PF17804 Tail specific protease N-terminal domain KQ255_04480 PF13439 Glycosyltransferase Family 4 KQ255_04480 PF00534 Glycosyl transferases group 1 KQ255_04485 PF01569 PAP2 superfamily KQ255_04490 PF04384 Iron-sulphur cluster assembly KQ255_04495 PF00334 Nucleoside diphosphate kinase KQ255_04500 PF04055 Radical SAM superfamily KQ255_04510 PF13464 Domain of unknown function (DUF4115) KQ255_04515 PF04551 GcpE protein KQ255_04520 PF13393 Histidyl-tRNA synthetase KQ255_04520 PF03129 Anticodon binding domain KQ255_04530 PF13360 PQQ-like domain KQ255_04535 PF01926 50S ribosome-binding GTPase KQ255_04535 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KQ255_04545 PF02556 Preprotein translocase subunit SecB KQ255_04550 PF00462 Glutaredoxin KQ255_04560 PF03193 RsgA GTPase KQ255_04565 PF00929 Exonuclease KQ255_04580 PF02321 Outer membrane efflux protein KQ255_04585 PF00005 ABC transporter KQ255_04585 PF02687 FtsX-like permease family KQ255_04585 PF12704 MacB-like periplasmic core domain KQ255_04590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ255_04605 PF08264 Anticodon-binding domain of tRNA KQ255_04605 PF00133 tRNA synthetases class I (I, L, M and V) KQ255_04605 PF09334 tRNA synthetases class I (M) KQ255_04605 PF13603 Leucyl-tRNA synthetase, Domain 2 KQ255_04615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ255_04615 PF00205 Thiamine pyrophosphate enzyme, central domain KQ255_04615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ255_04620 PF10369 Small subunit of acetolactate synthase KQ255_04625 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KQ255_04625 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KQ255_04630 PF00990 Diguanylate cyclase, GGDEF domain KQ255_04630 PF00563 EAL domain KQ255_04630 PF03707 Bacterial signalling protein N terminal repeat KQ255_04650 PF16658 Class II release factor RF3, C-terminal domain KQ255_04650 PF00009 Elongation factor Tu GTP binding domain KQ255_04650 PF03144 Elongation factor Tu domain 2 KQ255_04665 PF01026 TatD related DNase KQ255_04670 PF00694 Aconitase C-terminal domain KQ255_04670 PF00330 Aconitase family (aconitate hydratase) KQ255_04675 PF00899 ThiF family KQ255_04685 PF03466 LysR substrate binding domain KQ255_04685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_04695 PF01207 Dihydrouridine synthase (Dus) KQ255_04700 PF00589 Phage integrase family KQ255_04775 PF04945 YHS domain KQ255_04780 PF00672 HAMP domain KQ255_04780 PF00512 His Kinase A (phospho-acceptor) domain KQ255_04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_04785 PF00072 Response regulator receiver domain KQ255_04785 PF00486 Transcriptional regulatory protein, C terminal KQ255_04795 PF07732 Multicopper oxidase KQ255_04795 PF00394 Multicopper oxidase KQ255_04795 PF07731 Multicopper oxidase KQ255_04815 PF07690 Major Facilitator Superfamily KQ255_04825 PF00892 EamA-like transporter family KQ255_04830 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KQ255_04830 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KQ255_04835 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KQ255_04840 PF02233 NAD(P) transhydrogenase beta subunit KQ255_04845 PF00106 short chain dehydrogenase KQ255_04855 PF01261 Xylose isomerase-like TIM barrel KQ255_04860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ255_04860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ255_04865 PF00378 Enoyl-CoA hydratase/isomerase KQ255_04870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KQ255_04870 PF00072 Response regulator receiver domain KQ255_04870 PF00512 His Kinase A (phospho-acceptor) domain KQ255_04870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_04870 PF00672 HAMP domain KQ255_04870 PF01627 Hpt domain KQ255_04875 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_04885 PF05958 tRNA (Uracil-5-)-methyltransferase KQ255_04890 PF13291 ACT domain KQ255_04890 PF04607 Region found in RelA / SpoT proteins KQ255_04890 PF02824 TGS domain KQ255_04900 PF03819 MazG nucleotide pyrophosphohydrolase domain KQ255_04910 PF01743 Poly A polymerase head domain KQ255_04910 PF12626 Polymerase A arginine-rich C-terminus KQ255_04910 PF12627 Probable RNA and SrmB- binding site of polymerase A KQ255_04915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KQ255_04920 PF02548 Ketopantoate hydroxymethyltransferase KQ255_04925 PF02569 Pantoate-beta-alanine ligase KQ255_04930 PF03668 P-loop ATPase protein family KQ255_04935 PF00381 PTS HPr component phosphorylation site KQ255_04940 PF04751 Protein of unknown function (DUF615) KQ255_04945 PF00501 AMP-binding enzyme KQ255_04945 PF13193 AMP-binding enzyme C-terminal domain KQ255_04950 PF02824 TGS domain KQ255_04950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KQ255_04950 PF03129 Anticodon binding domain KQ255_04950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ255_04955 PF00707 Translation initiation factor IF-3, C-terminal domain KQ255_04955 PF05198 Translation initiation factor IF-3, N-terminal domain KQ255_04960 PF00043 Glutathione S-transferase, C-terminal domain KQ255_04960 PF02798 Glutathione S-transferase, N-terminal domain KQ255_04965 PF09335 SNARE associated Golgi protein KQ255_04970 PF07690 Major Facilitator Superfamily KQ255_04975 PF01632 Ribosomal protein L35 KQ255_04980 PF00453 Ribosomal protein L20 KQ255_04985 PF00665 Integrase core domain KQ255_04985 PF13936 Helix-turn-helix domain KQ255_05000 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KQ255_05000 PF01409 tRNA synthetases class II core domain (F) KQ255_05005 PF03483 B3/4 domain KQ255_05005 PF03484 tRNA synthetase B5 domain KQ255_05005 PF03147 Ferredoxin-fold anticodon binding domain KQ255_05005 PF01588 Putative tRNA binding domain KQ255_05005 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KQ255_05010 PF00216 Bacterial DNA-binding protein KQ255_05025 PF07498 Rho termination factor, N-terminal domain KQ255_05025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ255_05025 PF07497 Rho termination factor, RNA-binding domain KQ255_05030 PF00085 Thioredoxin KQ255_05035 PF02541 Ppx/GppA phosphatase family KQ255_05040 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KQ255_05045 PF01171 PP-loop family KQ255_05045 PF11734 TilS substrate C-terminal domain KQ255_05045 PF09179 TilS substrate binding domain KQ255_05050 PF03807 NADP oxidoreductase coenzyme F420-dependent KQ255_05050 PF14748 Pyrroline-5-carboxylate reductase dimerisation KQ255_05055 PF02325 YGGT family KQ255_05060 PF01367 5'-3' exonuclease, C-terminal SAM fold KQ255_05060 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KQ255_05060 PF00476 DNA polymerase family A KQ255_05060 PF01612 3'-5' exonuclease KQ255_05080 PF00437 Type II/IV secretion system protein KQ255_05085 PF02566 OsmC-like protein KQ255_05090 PF01047 MarR family KQ255_05100 PF00795 Carbon-nitrogen hydrolase KQ255_05145 PF00309 Sigma-54 factor, Activator interacting domain (AID) KQ255_05145 PF04963 Sigma-54 factor, core binding domain KQ255_05145 PF04552 Sigma-54, DNA binding domain KQ255_05150 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KQ255_05155 PF01722 BolA-like protein KQ255_05160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KQ255_05165 PF01634 ATP phosphoribosyltransferase KQ255_05170 PF00815 Histidinol dehydrogenase KQ255_05175 PF00155 Aminotransferase class I and II KQ255_05180 PF00425 chorismate binding enzyme KQ255_05180 PF04715 Anthranilate synthase component I, N terminal region KQ255_05220 PF00293 NUDIX domain KQ255_05225 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_05230 PF00814 Glycoprotease family KQ255_05235 PF04445 Putative SAM-dependent methyltransferase KQ255_05245 PF00756 Putative esterase KQ255_05255 PF00834 Ribulose-phosphate 3 epimerase family KQ255_05270 PF07731 Multicopper oxidase KQ255_05270 PF07732 Multicopper oxidase KQ255_05270 PF00394 Multicopper oxidase KQ255_05275 PF05275 Copper resistance protein B precursor (CopB) KQ255_05285 PF00893 Small Multidrug Resistance protein KQ255_05290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KQ255_05290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ255_05295 PF01960 ArgJ family KQ255_05300 PF02445 Quinolinate synthetase A protein KQ255_05325 PF00962 Adenosine/AMP deaminase KQ255_05330 PF08240 Alcohol dehydrogenase GroES-like domain KQ255_05330 PF00107 Zinc-binding dehydrogenase KQ255_05335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_05335 PF03466 LysR substrate binding domain KQ255_05340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_05340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_05340 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_05345 PF07690 Major Facilitator Superfamily KQ255_05350 PF02515 CoA-transferase family III KQ255_05360 PF00890 FAD binding domain KQ255_05360 PF14537 Cytochrome c3 KQ255_05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_05365 PF03466 LysR substrate binding domain KQ255_05375 PF07690 Major Facilitator Superfamily KQ255_05380 PF03466 LysR substrate binding domain KQ255_05380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_05390 PF01546 Peptidase family M20/M25/M40 KQ255_05390 PF07687 Peptidase dimerisation domain KQ255_05395 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ255_05395 PF12833 Helix-turn-helix domain KQ255_05405 PF01810 LysE type translocator KQ255_05410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_05410 PF03466 LysR substrate binding domain KQ255_05420 PF08267 Cobalamin-independent synthase, N-terminal domain KQ255_05420 PF01717 Cobalamin-independent synthase, Catalytic domain KQ255_05425 PF01613 Flavin reductase like domain KQ255_05430 PF00665 Integrase core domain KQ255_05430 PF13936 Helix-turn-helix domain KQ255_05435 PF16295 Tetracyclin repressor-like, C-terminal domain KQ255_05435 PF00440 Bacterial regulatory proteins, tetR family KQ255_05445 PF00665 Integrase core domain KQ255_05445 PF13936 Helix-turn-helix domain KQ255_05470 PF02567 Phenazine biosynthesis-like protein KQ255_05480 PF00268 Ribonucleotide reductase, small chain KQ255_05490 PF00317 Ribonucleotide reductase, all-alpha domain KQ255_05490 PF02867 Ribonucleotide reductase, barrel domain KQ255_05490 PF03477 ATP cone domain KQ255_05500 PF00072 Response regulator receiver domain KQ255_05500 PF00486 Transcriptional regulatory protein, C terminal KQ255_05505 PF00512 His Kinase A (phospho-acceptor) domain KQ255_05505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_05505 PF00672 HAMP domain KQ255_05515 PF00990 Diguanylate cyclase, GGDEF domain KQ255_05515 PF17151 Periplasmic sensor domain KQ255_05520 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KQ255_05525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KQ255_05530 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KQ255_05530 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KQ255_05540 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KQ255_05540 PF10531 SLBB domain KQ255_05540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KQ255_05545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ255_05545 PF00384 Molybdopterin oxidoreductase KQ255_05545 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KQ255_05550 PF00146 NADH dehydrogenase KQ255_05555 PF12838 4Fe-4S dicluster domain KQ255_05560 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KQ255_05565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KQ255_05570 PF00361 Proton-conducting membrane transporter KQ255_05570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KQ255_05575 PF00361 Proton-conducting membrane transporter KQ255_05580 PF00361 Proton-conducting membrane transporter KQ255_05590 PF00313 'Cold-shock' DNA-binding domain KQ255_05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_05600 PF03466 LysR substrate binding domain KQ255_05605 PF00970 Oxidoreductase FAD-binding domain KQ255_05605 PF00175 Oxidoreductase NAD-binding domain KQ255_05620 PF05552 Conserved TM helix KQ255_05635 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_05640 PF13533 Biotin-lipoyl like KQ255_05665 PF01588 Putative tRNA binding domain KQ255_05665 PF09334 tRNA synthetases class I (M) KQ255_05675 PF10609 NUBPL iron-transfer P-loop NTPase KQ255_05680 PF01048 Phosphorylase superfamily KQ255_05695 PF00692 dUTPase KQ255_05725 PF01207 Dihydrouridine synthase (Dus) KQ255_05735 PF00448 SRP54-type protein, GTPase domain KQ255_05735 PF02881 SRP54-type protein, helical bundle domain KQ255_05735 PF02978 Signal peptide binding domain KQ255_05740 PF03309 Type III pantothenate kinase KQ255_05750 PF01925 Sulfite exporter TauE/SafE KQ255_05760 PF06470 SMC proteins Flexible Hinge Domain KQ255_05760 PF02463 RecF/RecN/SMC N terminal domain KQ255_05770 PF12826 Helix-hairpin-helix motif KQ255_05770 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KQ255_05770 PF01653 NAD-dependent DNA ligase adenylation domain KQ255_05770 PF00533 BRCA1 C Terminus (BRCT) domain KQ255_05770 PF03120 NAD-dependent DNA ligase OB-fold domain KQ255_05775 PF00210 Ferritin-like domain KQ255_05780 PF07690 Major Facilitator Superfamily KQ255_05785 PF00982 Glycosyltransferase family 20 KQ255_05790 PF02358 Trehalose-phosphatase KQ255_05795 PF08241 Methyltransferase domain KQ255_05795 PF12697 Alpha/beta hydrolase family KQ255_05800 PF00202 Aminotransferase class-III KQ255_05800 PF04055 Radical SAM superfamily KQ255_05800 PF06968 Biotin and Thiamin Synthesis associated domain KQ255_05805 PF00155 Aminotransferase class I and II KQ255_05820 PF01479 S4 domain KQ255_05820 PF00849 RNA pseudouridylate synthase KQ255_05825 PF04079 Segregation and condensation complex subunit ScpB KQ255_05830 PF02616 Segregation and condensation protein ScpA KQ255_05835 PF01300 Telomere recombination KQ255_05840 PF04315 Elongation factor P hydroxylase KQ255_05845 PF02620 Large ribosomal RNA subunit accumulation protein YceD KQ255_05850 PF01783 Ribosomal L32p protein family KQ255_05855 PF00698 Acyl transferase domain KQ255_05865 PF00550 Phosphopantetheine attachment site KQ255_05870 PF04972 BON domain KQ255_05870 PF01476 LysM domain KQ255_05875 PF03070 TENA/THI-4/PQQC family KQ255_05875 PF08543 Phosphomethylpyrimidine kinase KQ255_05875 PF02581 Thiamine monophosphate synthase KQ255_05885 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KQ255_05890 PF00665 Integrase core domain KQ255_05890 PF13936 Helix-turn-helix domain KQ255_05905 PF02261 Aspartate decarboxylase KQ255_05910 PF01195 Peptidyl-tRNA hydrolase KQ255_05915 PF01386 Ribosomal L25p family KQ255_05920 PF14572 Phosphoribosyl synthetase-associated domain KQ255_05920 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KQ255_05945 PF08544 GHMP kinases C terminal KQ255_05945 PF00288 GHMP kinases N terminal domain KQ255_05950 PF03550 Outer membrane lipoprotein LolB KQ255_05960 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KQ255_05960 PF01488 Shikimate / quinate 5-dehydrogenase KQ255_05960 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KQ255_05965 PF10410 DnaB-helicase binding domain of primase KQ255_05965 PF08278 DNA primase DnaG DnaB-binding KQ255_05965 PF08275 DNA primase catalytic core, N-terminal domain KQ255_05965 PF01807 CHC2 zinc finger KQ255_05970 PF13525 Outer membrane lipoprotein KQ255_05975 PF00849 RNA pseudouridylate synthase KQ255_05975 PF01479 S4 domain KQ255_05980 PF02578 Multi-copper polyphenol oxidoreductase laccase KQ255_05985 PF03358 NADPH-dependent FMN reductase KQ255_05990 PF01668 SmpB protein KQ255_05995 PF01467 Cytidylyltransferase-like KQ255_06000 PF00037 4Fe-4S binding domain KQ255_06020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_06020 PF03466 LysR substrate binding domain KQ255_06025 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ255_06030 PF02028 BCCT, betaine/carnitine/choline family transporter KQ255_06035 PF07859 alpha/beta hydrolase fold KQ255_06040 PF00355 Rieske [2Fe-2S] domain KQ255_06040 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ255_06045 PF00171 Aldehyde dehydrogenase family KQ255_06050 PF00970 Oxidoreductase FAD-binding domain KQ255_06050 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_06050 PF00175 Oxidoreductase NAD-binding domain KQ255_06065 PF00795 Carbon-nitrogen hydrolase KQ255_06065 PF02540 NAD synthase KQ255_06075 PF02678 Pirin KQ255_06075 PF05726 Pirin C-terminal cupin domain KQ255_06080 PF03653 Uncharacterised protein family (UPF0093) KQ255_06085 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ255_06085 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ255_06095 PF00164 Ribosomal protein S12/S23 KQ255_06100 PF00177 Ribosomal protein S7p/S5e KQ255_06105 PF03144 Elongation factor Tu domain 2 KQ255_06105 PF03764 Elongation factor G, domain IV KQ255_06105 PF00009 Elongation factor Tu GTP binding domain KQ255_06105 PF00679 Elongation factor G C-terminus KQ255_06105 PF14492 Elongation Factor G, domain II KQ255_06110 PF00009 Elongation factor Tu GTP binding domain KQ255_06110 PF03144 Elongation factor Tu domain 2 KQ255_06110 PF03143 Elongation factor Tu C-terminal domain KQ255_06125 PF00583 Acetyltransferase (GNAT) family KQ255_06130 PF04377 Arginine-tRNA-protein transferase, C terminus KQ255_06130 PF04376 Arginine-tRNA-protein transferase, N terminus KQ255_06135 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KQ255_06140 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_06145 PF09397 Ftsk gamma domain KQ255_06145 PF01580 FtsK/SpoIIIE family KQ255_06145 PF17854 FtsK alpha domain KQ255_06145 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KQ255_06150 PF01810 LysE type translocator KQ255_06160 PF03776 Septum formation topological specificity factor MinE KQ255_06165 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KQ255_06170 PF03775 Septum formation inhibitor MinC, C-terminal domain KQ255_06180 PF01553 Acyltransferase KQ255_06185 PF13488 Glycine zipper KQ255_06185 PF00691 OmpA family KQ255_06190 PF00580 UvrD/REP helicase N-terminal domain KQ255_06190 PF13361 UvrD-like helicase C-terminal domain KQ255_06195 PF00692 dUTPase KQ255_06200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ255_06200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ255_06200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ255_06200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ255_06205 PF00696 Amino acid kinase family KQ255_06215 PF13230 Glutamine amidotransferases class-II KQ255_06220 PF01814 Hemerythrin HHE cation binding domain KQ255_06230 PF03658 RnfH family Ubiquitin KQ255_06235 PF04355 SmpA / OmlA family KQ255_06240 PF01475 Ferric uptake regulator family KQ255_06245 PF00437 Type II/IV secretion system protein KQ255_06250 PF00437 Type II/IV secretion system protein KQ255_06255 PF01168 Alanine racemase, N-terminal domain KQ255_06265 PF12320 Type 5 capsule protein repressor C-terminal domain KQ255_06265 PF00149 Calcineurin-like phosphoesterase KQ255_06285 PF08338 Domain of unknown function (DUF1731) KQ255_06285 PF01370 NAD dependent epimerase/dehydratase family KQ255_06290 PF01266 FAD dependent oxidoreductase KQ255_06295 PF00490 Delta-aminolevulinic acid dehydratase KQ255_06300 PF03061 Thioesterase superfamily KQ255_06305 PF13533 Biotin-lipoyl like KQ255_06310 PF07690 Major Facilitator Superfamily KQ255_06325 PF13356 Arm DNA-binding domain KQ255_06325 PF00589 Phage integrase family KQ255_06380 PF00436 Single-strand binding protein family KQ255_06400 PF07693 KAP family P-loop domain KQ255_06415 PF01026 TatD related DNase KQ255_06435 PF00083 Sugar (and other) transporter KQ255_06440 PF00701 Dihydrodipicolinate synthetase family KQ255_06450 PF04542 Sigma-70 region 2 KQ255_06450 PF08281 Sigma-70, region 4 KQ255_06460 PF07715 TonB-dependent Receptor Plug Domain KQ255_06460 PF00593 TonB dependent receptor KQ255_06470 PF04575 Protein of unknown function (DUF560) KQ255_06480 PF01126 Heme oxygenase KQ255_06510 PF02574 Homocysteine S-methyltransferase KQ255_06520 PF06039 Malate:quinone oxidoreductase (Mqo) KQ255_06525 PF00732 GMC oxidoreductase KQ255_06525 PF05199 GMC oxidoreductase KQ255_06530 PF00171 Aldehyde dehydrogenase family KQ255_06535 PF00440 Bacterial regulatory proteins, tetR family KQ255_06535 PF13977 BetI-type transcriptional repressor, C-terminal KQ255_06540 PF02028 BCCT, betaine/carnitine/choline family transporter KQ255_06545 PF02028 BCCT, betaine/carnitine/choline family transporter KQ255_06555 PF03061 Thioesterase superfamily KQ255_06565 PF07683 Cobalamin synthesis protein cobW C-terminal domain KQ255_06565 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ255_06570 PF00375 Sodium:dicarboxylate symporter family KQ255_06575 PF07152 YaeQ protein KQ255_06580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ255_06585 PF14883 Hypothetical glycosyl hydrolase family 13 KQ255_06585 PF01522 Polysaccharide deacetylase KQ255_06590 PF00535 Glycosyl transferase family 2 KQ255_06600 PF00378 Enoyl-CoA hydratase/isomerase KQ255_06615 PF01614 Bacterial transcriptional regulator KQ255_06615 PF09339 IclR helix-turn-helix domain KQ255_06620 PF00355 Rieske [2Fe-2S] domain KQ255_06630 PF00355 Rieske [2Fe-2S] domain KQ255_06640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ255_06645 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_06645 PF14759 Reductase C-terminal KQ255_06650 PF07690 Major Facilitator Superfamily KQ255_06660 PF12697 Alpha/beta hydrolase family KQ255_06670 PF01958 Domain of unknown function DUF108 KQ255_06670 PF03447 Homoserine dehydrogenase, NAD binding domain KQ255_06675 PF00171 Aldehyde dehydrogenase family KQ255_06680 PF00205 Thiamine pyrophosphate enzyme, central domain KQ255_06680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ255_06680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ255_06690 PF07690 Major Facilitator Superfamily KQ255_06695 PF01327 Polypeptide deformylase KQ255_06700 PF04960 Glutaminase KQ255_06710 PF07690 Major Facilitator Superfamily KQ255_06715 PF01263 Aldose 1-epimerase KQ255_06725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_06725 PF03466 LysR substrate binding domain KQ255_06735 PF07690 Major Facilitator Superfamily KQ255_06740 PF00456 Transketolase, thiamine diphosphate binding domain KQ255_06745 PF02779 Transketolase, pyrimidine binding domain KQ255_06745 PF02780 Transketolase, C-terminal domain KQ255_06750 PF02574 Homocysteine S-methyltransferase KQ255_06750 PF00809 Pterin binding enzyme KQ255_06750 PF02965 Vitamin B12 dependent methionine synthase, activation domain KQ255_06750 PF02310 B12 binding domain KQ255_06750 PF02607 B12 binding domain KQ255_06755 PF01384 Phosphate transporter family KQ255_06760 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_06775 PF03781 Sulfatase-modifying factor enzyme 1 KQ255_06780 PF00884 Sulfatase KQ255_06790 PF01521 Iron-sulphur cluster biosynthesis KQ255_06790 PF01106 NifU-like domain KQ255_06795 PF07715 TonB-dependent Receptor Plug Domain KQ255_06795 PF00593 TonB dependent receptor KQ255_06800 PF07715 TonB-dependent Receptor Plug Domain KQ255_06800 PF00593 TonB dependent receptor KQ255_06810 PF00561 alpha/beta hydrolase fold KQ255_06815 PF00484 Carbonic anhydrase KQ255_06820 PF13472 GDSL-like Lipase/Acylhydrolase family KQ255_06825 PF00005 ABC transporter KQ255_06835 PF01694 Rhomboid family KQ255_06840 PF00912 Transglycosylase KQ255_06845 PF02503 Polyphosphate kinase middle domain KQ255_06845 PF13090 Polyphosphate kinase C-terminal domain 2 KQ255_06845 PF17941 Polyphosphate kinase C-terminal domain 1 KQ255_06845 PF13089 Polyphosphate kinase N-terminal domain KQ255_06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_06860 PF03466 LysR substrate binding domain KQ255_06865 PF00561 alpha/beta hydrolase fold KQ255_06870 PF18113 Rubredoxin binding C-terminal domain KQ255_06870 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_06875 PF00301 Rubredoxin KQ255_06890 PF01336 OB-fold nucleic acid binding domain KQ255_06890 PF00152 tRNA synthetases class II (D, K and N) KQ255_06895 PF14052 Capsule assembly protein Wzi KQ255_06905 PF01507 Phosphoadenosine phosphosulfate reductase family KQ255_06910 PF00009 Elongation factor Tu GTP binding domain KQ255_06925 PF03600 Citrate transporter KQ255_06930 PF01595 Cyclin M transmembrane N-terminal domain KQ255_06930 PF03471 Transporter associated domain KQ255_06930 PF00571 CBS domain KQ255_06935 PF03466 LysR substrate binding domain KQ255_06935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_06940 PF00463 Isocitrate lyase family KQ255_06955 PF01774 UreD urease accessory protein KQ255_06960 PF00547 Urease, gamma subunit KQ255_06965 PF00699 Urease beta subunit KQ255_06970 PF00449 Urease alpha-subunit, N-terminal domain KQ255_06970 PF01979 Amidohydrolase family KQ255_06975 PF05194 UreE urease accessory protein, C-terminal domain KQ255_06975 PF02814 UreE urease accessory protein, N-terminal domain KQ255_06980 PF01730 UreF KQ255_06985 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ255_07000 PF00905 Penicillin binding protein transpeptidase domain KQ255_07000 PF03717 Penicillin-binding Protein dimerisation domain KQ255_07015 PF05191 Adenylate kinase, active site lid KQ255_07025 PF00730 HhH-GPD superfamily base excision DNA repair protein KQ255_07025 PF00633 Helix-hairpin-helix motif KQ255_07025 PF10576 Iron-sulfur binding domain of endonuclease III KQ255_07030 PF04060 Putative Fe-S cluster KQ255_07035 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KQ255_07035 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KQ255_07045 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KQ255_07050 PF02590 Predicted SPOUT methyltransferase KQ255_07055 PF05362 Lon protease (S16) C-terminal proteolytic domain KQ255_07055 PF02190 ATP-dependent protease La (LON) substrate-binding domain KQ255_07055 PF00004 ATPase family associated with various cellular activities (AAA) KQ255_07060 PF00665 Integrase core domain KQ255_07060 PF13936 Helix-turn-helix domain KQ255_07065 PF01636 Phosphotransferase enzyme family KQ255_07070 PF00665 Integrase core domain KQ255_07070 PF13936 Helix-turn-helix domain KQ255_07080 PF00691 OmpA family KQ255_07080 PF04355 SmpA / OmlA family KQ255_07085 PF01812 5-formyltetrahydrofolate cyclo-ligase family KQ255_07410 PF01476 LysM domain KQ255_07410 PF08525 Opacity-associated protein A N-terminal motif KQ255_07410 PF01551 Peptidase family M23 KQ255_07455 PF00884 Sulfatase KQ255_07455 PF08019 Phosphoethanolamine transferase EptA/EptB KQ255_07495 PF00557 Metallopeptidase family M24 KQ255_07495 PF05195 Aminopeptidase P, N-terminal domain KQ255_07500 PF01494 FAD binding domain KQ255_07505 PF01494 FAD binding domain KQ255_07515 PF13411 MerR HTH family regulatory protein KQ255_07525 PF01810 LysE type translocator KQ255_07530 PF03466 LysR substrate binding domain KQ255_07530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_07540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KQ255_07545 PF02021 Uncharacterised protein family UPF0102 KQ255_07550 PF04972 BON domain KQ255_07560 PF09297 NADH pyrophosphatase zinc ribbon domain KQ255_07560 PF00293 NUDIX domain KQ255_07570 PF00929 Exonuclease KQ255_07575 PF01476 LysM domain KQ255_07575 PF01464 Transglycosylase SLT domain KQ255_07575 PF01476 LysM domain KQ255_07575 PF01464 Transglycosylase SLT domain KQ255_07580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KQ255_07585 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_07590 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_07590 PF12911 N-terminal TM domain of oligopeptide transport permease C KQ255_07595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KQ255_07595 PF00005 ABC transporter KQ255_07600 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_07600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ255_07605 PF00593 TonB dependent receptor KQ255_07605 PF07715 TonB-dependent Receptor Plug Domain KQ255_07615 PF00929 Exonuclease KQ255_07620 PF01979 Amidohydrolase family KQ255_07625 PF01590 GAF domain KQ255_07625 PF00360 Phytochrome region KQ255_07625 PF00563 EAL domain KQ255_07625 PF00990 Diguanylate cyclase, GGDEF domain KQ255_07630 PF00764 Arginosuccinate synthase KQ255_07635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ255_07635 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_07645 PF03180 NLPA lipoprotein KQ255_07665 PF04717 Type VI secretion system, phage-baseplate injector KQ255_07665 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KQ255_07665 PF13296 Putative type VI secretion system Rhs element Vgr KQ255_07670 PF05593 RHS Repeat KQ255_07670 PF03527 RHS protein KQ255_07705 PF00324 Amino acid permease KQ255_07710 PF01266 FAD dependent oxidoreductase KQ255_07715 PF00324 Amino acid permease KQ255_07725 PF00392 Bacterial regulatory proteins, gntR family KQ255_07725 PF07729 FCD domain KQ255_07735 PF00171 Aldehyde dehydrogenase family KQ255_07745 PF00202 Aminotransferase class-III KQ255_07750 PF04958 Arginine N-succinyltransferase beta subunit KQ255_07755 PF00324 Amino acid permease KQ255_07775 PF00171 Aldehyde dehydrogenase family KQ255_07780 PF12833 Helix-turn-helix domain KQ255_07780 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ255_07785 PF00892 EamA-like transporter family KQ255_07790 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus KQ255_07790 PF08666 SAF domain KQ255_07795 PF07690 Major Facilitator Superfamily KQ255_07800 PF13378 Enolase C-terminal domain-like KQ255_07805 PF00701 Dihydrodipicolinate synthetase family KQ255_07810 PF00171 Aldehyde dehydrogenase family KQ255_07815 PF07729 FCD domain KQ255_07815 PF00392 Bacterial regulatory proteins, gntR family KQ255_07820 PF07519 Tannase and feruloyl esterase KQ255_07835 PF03573 outer membrane porin, OprD family KQ255_07840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_07840 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_07840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_07850 PF00171 Aldehyde dehydrogenase family KQ255_07855 PF00378 Enoyl-CoA hydratase/isomerase KQ255_07860 PF07690 Major Facilitator Superfamily KQ255_07875 PF00175 Oxidoreductase NAD-binding domain KQ255_07875 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_07880 PF00355 Rieske [2Fe-2S] domain KQ255_07885 PF07690 Major Facilitator Superfamily KQ255_07890 PF03573 outer membrane porin, OprD family KQ255_07895 PF05199 GMC oxidoreductase KQ255_07900 PF07859 alpha/beta hydrolase fold KQ255_07905 PF00106 short chain dehydrogenase KQ255_07910 PF00743 Flavin-binding monooxygenase-like KQ255_07915 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ255_07915 PF12833 Helix-turn-helix domain KQ255_07920 PF04072 Leucine carboxyl methyltransferase KQ255_07925 PF00743 Flavin-binding monooxygenase-like KQ255_07930 PF00106 short chain dehydrogenase KQ255_07940 PF00440 Bacterial regulatory proteins, tetR family KQ255_07940 PF17932 Tetracyclin repressor-like, C-terminal domain KQ255_07945 PF02678 Pirin KQ255_07945 PF17954 Quercetinase C-terminal cupin domain KQ255_07955 PF00106 short chain dehydrogenase KQ255_07960 PF00743 Flavin-binding monooxygenase-like KQ255_07970 PF00860 Permease family KQ255_07975 PF00962 Adenosine/AMP deaminase KQ255_07980 PF01292 Prokaryotic cytochrome b561 KQ255_07990 PF01351 Ribonuclease HII KQ255_07995 PF02599 Global regulator protein family KQ255_08000 PF13840 ACT domain KQ255_08000 PF01842 ACT domain KQ255_08000 PF00696 Amino acid kinase family KQ255_08095 PF00772 DnaB-like helicase N terminal domain KQ255_08095 PF03796 DnaB-like helicase C terminal domain KQ255_08325 PF03869 Arc-like DNA binding domain KQ255_08405 PF00817 impB/mucB/samB family KQ255_08405 PF11799 impB/mucB/samB family C-terminal domain KQ255_08405 PF13438 Domain of unknown function (DUF4113) KQ255_08410 PF00717 Peptidase S24-like KQ255_08415 PF13356 Arm DNA-binding domain KQ255_08415 PF00589 Phage integrase family KQ255_08420 PF02272 DHHA1 domain KQ255_08420 PF01411 tRNA synthetases class II (A) KQ255_08420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KQ255_08425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KQ255_08425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KQ255_08430 PF13393 Histidyl-tRNA synthetase KQ255_08435 PF00709 Adenylosuccinate synthetase KQ255_08450 PF00248 Aldo/keto reductase family KQ255_08455 PF13545 Crp-like helix-turn-helix domain KQ255_08455 PF00027 Cyclic nucleotide-binding domain KQ255_08465 PF02566 OsmC-like protein KQ255_08480 PF00004 ATPase family associated with various cellular activities (AAA) KQ255_08480 PF07724 AAA domain (Cdc48 subfamily) KQ255_08480 PF17871 AAA lid domain KQ255_08480 PF02861 Clp amino terminal domain, pathogenicity island component KQ255_08480 PF10431 C-terminal, D2-small domain, of ClpB protein KQ255_08495 PF02926 THUMP domain KQ255_08495 PF01170 Putative RNA methylase family UPF0020 KQ255_08495 PF10672 S-adenosylmethionine-dependent methyltransferase KQ255_08505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KQ255_08505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KQ255_08510 PF01979 Amidohydrolase family KQ255_08515 PF00691 OmpA family KQ255_08515 PF13488 Glycine zipper KQ255_08525 PF00043 Glutathione S-transferase, C-terminal domain KQ255_08525 PF13417 Glutathione S-transferase, N-terminal domain KQ255_08530 PF02390 Putative methyltransferase KQ255_08540 PF02798 Glutathione S-transferase, N-terminal domain KQ255_08540 PF00043 Glutathione S-transferase, C-terminal domain KQ255_08550 PF13192 Thioredoxin domain KQ255_08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_08570 PF10417 C-terminal domain of 1-Cys peroxiredoxin KQ255_08570 PF00578 AhpC/TSA family KQ255_08575 PF00271 Helicase conserved C-terminal domain KQ255_08575 PF04408 Helicase associated domain (HA2) KQ255_08575 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KQ255_08575 PF00270 DEAD/DEAH box helicase KQ255_08575 PF11898 Domain of unknown function (DUF3418) KQ255_08580 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KQ255_08580 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KQ255_08590 PF07690 Major Facilitator Superfamily KQ255_08595 PF03594 Benzoate membrane transport protein KQ255_08600 PF00106 short chain dehydrogenase KQ255_08605 PF00175 Oxidoreductase NAD-binding domain KQ255_08605 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_08605 PF00970 Oxidoreductase FAD-binding domain KQ255_08610 PF00866 Ring hydroxylating beta subunit KQ255_08615 PF00355 Rieske [2Fe-2S] domain KQ255_08615 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ255_08620 PF03466 LysR substrate binding domain KQ255_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_08630 PF00403 Heavy-metal-associated domain KQ255_08635 PF00376 MerR family regulatory protein KQ255_08635 PF09278 MerR, DNA binding KQ255_08670 PF02601 Exonuclease VII, large subunit KQ255_08670 PF13742 OB-fold nucleic acid binding domain KQ255_08700 PF01810 LysE type translocator KQ255_08705 PF00313 'Cold-shock' DNA-binding domain KQ255_08715 PF03807 NADP oxidoreductase coenzyme F420-dependent KQ255_08715 PF14748 Pyrroline-5-carboxylate reductase dimerisation KQ255_08740 PF07690 Major Facilitator Superfamily KQ255_08745 PF01638 HxlR-like helix-turn-helix KQ255_08815 PF06381 Protein of unknown function (DUF1073) KQ255_08835 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) KQ255_08855 PF13229 Right handed beta helix region KQ255_08855 PF12708 Pectate lyase superfamily protein KQ255_08900 PF01406 tRNA synthetases class I (C) catalytic domain KQ255_08900 PF09190 DALR domain KQ255_08905 PF00571 CBS domain KQ255_08905 PF01380 SIS domain KQ255_08920 PF03968 OstA-like protein KQ255_08925 PF12399 Branched-chain amino acid ATP-binding cassette transporter KQ255_08925 PF00005 ABC transporter KQ255_08930 PF02321 Outer membrane efflux protein KQ255_08940 PF13936 Helix-turn-helix domain KQ255_08940 PF00665 Integrase core domain KQ255_08955 PF01205 Uncharacterized protein family UPF0029 KQ255_08960 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_08970 PF01596 O-methyltransferase KQ255_08980 PF11953 Domain of unknown function (DUF3470) KQ255_08980 PF00037 4Fe-4S binding domain KQ255_08990 PF05190 MutS family domain IV KQ255_08990 PF05192 MutS domain III KQ255_08990 PF01624 MutS domain I KQ255_08990 PF05188 MutS domain II KQ255_08990 PF00488 MutS domain V KQ255_08995 PF01037 Lrp/AsnC ligand binding domain KQ255_09000 PF00892 EamA-like transporter family KQ255_09010 PF03279 Bacterial lipid A biosynthesis acyltransferase KQ255_09020 PF07690 Major Facilitator Superfamily KQ255_09035 PF00665 Integrase core domain KQ255_09035 PF13936 Helix-turn-helix domain KQ255_09050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ255_09050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ255_09075 PF13296 Putative type VI secretion system Rhs element Vgr KQ255_09075 PF04717 Type VI secretion system, phage-baseplate injector KQ255_09075 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KQ255_09080 PF03527 RHS protein KQ255_09080 PF05593 RHS Repeat KQ255_09095 PF03527 RHS protein KQ255_09095 PF05593 RHS Repeat KQ255_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_09115 PF03466 LysR substrate binding domain KQ255_09120 PF01566 Natural resistance-associated macrophage protein KQ255_09125 PF03746 LamB/YcsF family KQ255_09130 PF07286 Protein of unknown function (DUF1445) KQ255_09140 PF00289 Biotin carboxylase, N-terminal domain KQ255_09140 PF00364 Biotin-requiring enzyme KQ255_09140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ255_09140 PF02785 Biotin carboxylase C-terminal domain KQ255_09145 PF00654 Voltage gated chloride channel KQ255_09170 PF00440 Bacterial regulatory proteins, tetR family KQ255_09180 PF08240 Alcohol dehydrogenase GroES-like domain KQ255_09180 PF13823 Alcohol dehydrogenase GroES-associated KQ255_09180 PF00107 Zinc-binding dehydrogenase KQ255_09195 PF02785 Biotin carboxylase C-terminal domain KQ255_09195 PF00289 Biotin carboxylase, N-terminal domain KQ255_09195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ255_09200 PF02525 Flavodoxin-like fold KQ255_09205 PF01638 HxlR-like helix-turn-helix KQ255_09215 PF01402 Ribbon-helix-helix protein, copG family KQ255_09215 PF08753 NikR C terminal nickel binding domain KQ255_09220 PF01425 Amidase KQ255_09225 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ255_09230 PF00005 ABC transporter KQ255_09270 PF05947 Type VI secretion system, TssF KQ255_09285 PF14331 ImcF-related N-terminal domain KQ255_09285 PF06761 Intracellular multiplication and human macrophage-killing KQ255_09285 PF06744 Type VI secretion protein IcmF C-terminal KQ255_09295 PF01389 OmpA-like transmembrane domain KQ255_09295 PF00691 OmpA family KQ255_09305 PF17871 AAA lid domain KQ255_09305 PF07724 AAA domain (Cdc48 subfamily) KQ255_09305 PF00004 ATPase family associated with various cellular activities (AAA) KQ255_09305 PF10431 C-terminal, D2-small domain, of ClpB protein KQ255_09310 PF06812 ImpA, N-terminal, type VI secretion system KQ255_09315 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KQ255_09335 PF03466 LysR substrate binding domain KQ255_09335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_09345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KQ255_09350 PF07690 Major Facilitator Superfamily KQ255_09365 PF02677 Epoxyqueuosine reductase QueH KQ255_09375 PF09278 MerR, DNA binding KQ255_09375 PF00376 MerR family regulatory protein KQ255_09385 PF00701 Dihydrodipicolinate synthetase family KQ255_09395 PF00392 Bacterial regulatory proteins, gntR family KQ255_09400 PF05544 Proline racemase KQ255_09405 PF01266 FAD dependent oxidoreductase KQ255_09415 PF04324 BFD-like [2Fe-2S] binding domain KQ255_09415 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_09425 PF00083 Sugar (and other) transporter KQ255_09430 PF00171 Aldehyde dehydrogenase family KQ255_09435 PF13520 Amino acid permease KQ255_09440 PF03315 Serine dehydratase beta chain KQ255_09440 PF03313 Serine dehydratase alpha chain KQ255_09445 PF01575 MaoC like domain KQ255_09445 PF00171 Aldehyde dehydrogenase family KQ255_09450 PF05138 Phenylacetic acid catabolic protein KQ255_09455 PF06243 Phenylacetic acid degradation B KQ255_09460 PF05138 Phenylacetic acid catabolic protein KQ255_09465 PF01883 Iron-sulfur cluster assembly protein KQ255_09470 PF00175 Oxidoreductase NAD-binding domain KQ255_09470 PF00970 Oxidoreductase FAD-binding domain KQ255_09470 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_09475 PF00378 Enoyl-CoA hydratase/isomerase KQ255_09480 PF00378 Enoyl-CoA hydratase/isomerase KQ255_09485 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ255_09485 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ255_09485 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KQ255_09490 PF02803 Thiolase, C-terminal domain KQ255_09490 PF00108 Thiolase, N-terminal domain KQ255_09495 PF00501 AMP-binding enzyme KQ255_09495 PF14535 AMP-binding enzyme C-terminal domain KQ255_09500 PF07848 PaaX-like protein KQ255_09500 PF08223 PaaX-like protein C-terminal domain KQ255_09505 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_09510 PF03061 Thioesterase superfamily KQ255_09515 PF02463 RecF/RecN/SMC N terminal domain KQ255_09520 PF00580 UvrD/REP helicase N-terminal domain KQ255_09520 PF13361 UvrD-like helicase C-terminal domain KQ255_09555 PF00313 'Cold-shock' DNA-binding domain KQ255_09585 PF02515 CoA-transferase family III KQ255_09590 PF00682 HMGL-like KQ255_09595 PF07690 Major Facilitator Superfamily KQ255_09600 PF00199 Catalase KQ255_09605 PF01292 Prokaryotic cytochrome b561 KQ255_09625 PF12697 Alpha/beta hydrolase family KQ255_09630 PF01613 Flavin reductase like domain KQ255_09635 PF00296 Luciferase-like monooxygenase KQ255_09640 PF00171 Aldehyde dehydrogenase family KQ255_09650 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ255_09660 PF00171 Aldehyde dehydrogenase family KQ255_09665 PF02627 Carboxymuconolactone decarboxylase family KQ255_09670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_09670 PF03466 LysR substrate binding domain KQ255_09675 PF02525 Flavodoxin-like fold KQ255_09680 PF01614 Bacterial transcriptional regulator KQ255_09680 PF09339 IclR helix-turn-helix domain KQ255_09685 PF01494 FAD binding domain KQ255_09690 PF07702 UTRA domain KQ255_09690 PF00392 Bacterial regulatory proteins, gntR family KQ255_09700 PF00005 ABC transporter KQ255_09700 PF08402 TOBE domain KQ255_09705 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_09710 PF01266 FAD dependent oxidoreductase KQ255_09715 PF00266 Aminotransferase class-V KQ255_09720 PF13419 Haloacid dehalogenase-like hydrolase KQ255_09725 PF07690 Major Facilitator Superfamily KQ255_09730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_09730 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_09730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_09735 PF02515 CoA-transferase family III KQ255_09740 PF09339 IclR helix-turn-helix domain KQ255_09745 PF00378 Enoyl-CoA hydratase/isomerase KQ255_09750 PF03060 Nitronate monooxygenase KQ255_09755 PF07690 Major Facilitator Superfamily KQ255_09760 PF09339 IclR helix-turn-helix domain KQ255_09765 PF00108 Thiolase, N-terminal domain KQ255_09765 PF02803 Thiolase, C-terminal domain KQ255_09770 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ255_09770 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KQ255_09770 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ255_09780 PF00378 Enoyl-CoA hydratase/isomerase KQ255_09785 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_09785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_09785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_09790 PF07690 Major Facilitator Superfamily KQ255_09795 PF01144 Coenzyme A transferase KQ255_09800 PF01144 Coenzyme A transferase KQ255_09810 PF07690 Major Facilitator Superfamily KQ255_09820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_09820 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ255_09820 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_09820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_09835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_09835 PF03466 LysR substrate binding domain KQ255_09840 PF00682 HMGL-like KQ255_09845 PF18140 Propionyl-coenzyme A carboxylase BT domain KQ255_09845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ255_09845 PF00289 Biotin carboxylase, N-terminal domain KQ255_09845 PF02785 Biotin carboxylase C-terminal domain KQ255_09845 PF00364 Biotin-requiring enzyme KQ255_09850 PF00378 Enoyl-CoA hydratase/isomerase KQ255_09855 PF01039 Carboxyl transferase domain KQ255_09860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_09860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_09860 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_09865 PF00440 Bacterial regulatory proteins, tetR family KQ255_09870 PF00501 AMP-binding enzyme KQ255_09870 PF13193 AMP-binding enzyme C-terminal domain KQ255_09890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_09890 PF03466 LysR substrate binding domain KQ255_09925 PF02464 Competence-damaged protein KQ255_09925 PF18146 Damage-inducible protein CinA KH domain KQ255_09925 PF00994 Probable molybdopterin binding domain KQ255_09935 PF00199 Catalase KQ255_09935 PF18011 C-terminal domain found in long catalases KQ255_09935 PF06628 Catalase-related immune-responsive KQ255_09960 PF00717 Peptidase S24-like KQ255_09970 PF13404 AsnC-type helix-turn-helix domain KQ255_09970 PF01037 Lrp/AsnC ligand binding domain KQ255_09980 PF00512 His Kinase A (phospho-acceptor) domain KQ255_09980 PF09308 LuxQ, periplasmic KQ255_09980 PF00072 Response regulator receiver domain KQ255_09980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_09985 PF00072 Response regulator receiver domain KQ255_10000 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_10005 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_10010 PF00005 ABC transporter KQ255_10015 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ255_10020 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ255_10030 PF03466 LysR substrate binding domain KQ255_10030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_10035 PF01810 LysE type translocator KQ255_10040 PF00266 Aminotransferase class-V KQ255_10050 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_10055 PF00581 Rhodanese-like domain KQ255_10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_10065 PF03466 LysR substrate binding domain KQ255_10070 PF02798 Glutathione S-transferase, N-terminal domain KQ255_10075 PF14834 Glutathione S-transferase, C-terminal domain KQ255_10075 PF02798 Glutathione S-transferase, N-terminal domain KQ255_10080 PF03466 LysR substrate binding domain KQ255_10080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_10085 PF03788 LrgA family KQ255_10090 PF04172 LrgB-like family KQ255_10095 PF00392 Bacterial regulatory proteins, gntR family KQ255_10110 PF07690 Major Facilitator Superfamily KQ255_10115 PF16957 Malonate decarboxylase, alpha subunit, transporter KQ255_10120 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KQ255_10125 PF06857 Malonate decarboxylase delta subunit (MdcD) KQ255_10130 PF01039 Carboxyl transferase domain KQ255_10140 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KQ255_10145 PF00698 Acyl transferase domain KQ255_10165 PF00155 Aminotransferase class I and II KQ255_10165 PF00392 Bacterial regulatory proteins, gntR family KQ255_10175 PF02322 Cytochrome bd terminal oxidase subunit II KQ255_10180 PF01654 Cytochrome bd terminal oxidase subunit I KQ255_10195 PF00296 Luciferase-like monooxygenase KQ255_10200 PF00083 Sugar (and other) transporter KQ255_10220 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KQ255_10225 PF00005 ABC transporter KQ255_10230 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_10235 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KQ255_10240 PF01177 Asp/Glu/Hydantoin racemase KQ255_10245 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ255_10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_10255 PF03466 LysR substrate binding domain KQ255_10265 PF13382 Adenine deaminase C-terminal domain KQ255_10265 PF01979 Amidohydrolase family KQ255_10275 PF03960 ArsC family KQ255_10280 PF01022 Bacterial regulatory protein, arsR family KQ255_10285 PF01758 Sodium Bile acid symporter family KQ255_10290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_10290 PF03466 LysR substrate binding domain KQ255_10305 PF13192 Thioredoxin domain KQ255_10305 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_10320 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_10325 PF00588 SpoU rRNA Methylase family KQ255_10330 PF07733 Bacterial DNA polymerase III alpha NTPase domain KQ255_10330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KQ255_10330 PF14579 Helix-hairpin-helix motif KQ255_10330 PF02811 PHP domain KQ255_10330 PF01336 OB-fold nucleic acid binding domain KQ255_10335 PF00710 Asparaginase, N-terminal KQ255_10335 PF17763 Glutaminase/Asparaginase C-terminal domain KQ255_10340 PF00375 Sodium:dicarboxylate symporter family KQ255_10345 PF00155 Aminotransferase class I and II KQ255_10350 PF01641 SelR domain KQ255_10355 PF00255 Glutathione peroxidase KQ255_10360 PF12852 Cupin KQ255_10360 PF12833 Helix-turn-helix domain KQ255_10370 PF00155 Aminotransferase class I and II KQ255_10375 PF08335 GlnD PII-uridylyltransferase KQ255_10375 PF01966 HD domain KQ255_10375 PF01909 Nucleotidyltransferase domain KQ255_10380 PF02222 ATP-grasp domain KQ255_10390 PF05437 Branched-chain amino acid transport protein (AzlD) KQ255_10395 PF03591 AzlC protein KQ255_10420 PF06071 Protein of unknown function (DUF933) KQ255_10420 PF01926 50S ribosome-binding GTPase KQ255_10425 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_10435 PF03180 NLPA lipoprotein KQ255_10440 PF03180 NLPA lipoprotein KQ255_10445 PF00296 Luciferase-like monooxygenase KQ255_10455 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ255_10455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_10470 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_10475 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_10480 PF00005 ABC transporter KQ255_10490 PF01037 Lrp/AsnC ligand binding domain KQ255_10495 PF01709 Transcriptional regulator KQ255_10505 PF00440 Bacterial regulatory proteins, tetR family KQ255_10525 PF13936 Helix-turn-helix domain KQ255_10525 PF00665 Integrase core domain KQ255_10535 PF03466 LysR substrate binding domain KQ255_10535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_10545 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ255_10555 PF00892 EamA-like transporter family KQ255_10575 PF00577 Outer membrane usher protein KQ255_10575 PF13953 PapC C-terminal domain KQ255_10575 PF13954 PapC N-terminal domain KQ255_10580 PF02753 Pili assembly chaperone PapD, C-terminal domain KQ255_10580 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KQ255_10590 PF13936 Helix-turn-helix domain KQ255_10590 PF00665 Integrase core domain KQ255_10610 PF06968 Biotin and Thiamin Synthesis associated domain KQ255_10610 PF04055 Radical SAM superfamily KQ255_10615 PF08331 Domain of unknown function (DUF1730) KQ255_10620 PF01256 Carbohydrate kinase KQ255_10620 PF03853 YjeF-related protein N-terminus KQ255_10625 PF02075 Crossover junction endodeoxyribonuclease RuvC KQ255_10640 PF00905 Penicillin binding protein transpeptidase domain KQ255_10665 PF00438 S-adenosylmethionine synthetase, N-terminal domain KQ255_10665 PF02772 S-adenosylmethionine synthetase, central domain KQ255_10665 PF02773 S-adenosylmethionine synthetase, C-terminal domain KQ255_10670 PF02779 Transketolase, pyrimidine binding domain KQ255_10670 PF02780 Transketolase, C-terminal domain KQ255_10670 PF00456 Transketolase, thiamine diphosphate binding domain KQ255_10680 PF04264 YceI-like domain KQ255_10690 PF09992 Phosphodiester glycosidase KQ255_10700 PF05958 tRNA (Uracil-5-)-methyltransferase KQ255_10705 PF04229 GrpB protein KQ255_10710 PF01619 Proline dehydrogenase KQ255_10710 PF00171 Aldehyde dehydrogenase family KQ255_10710 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KQ255_10710 PF14850 DNA-binding domain of Proline dehydrogenase KQ255_10715 PF01037 Lrp/AsnC ligand binding domain KQ255_10720 PF00474 Sodium:solute symporter family KQ255_10725 PF02146 Sir2 family KQ255_10730 PF01597 Glycine cleavage H-protein KQ255_10735 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ255_10735 PF12833 Helix-turn-helix domain KQ255_10745 PF00664 ABC transporter transmembrane region KQ255_10745 PF00005 ABC transporter KQ255_10750 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KQ255_10755 PF06912 Protein of unknown function (DUF1275) KQ255_10760 PF00375 Sodium:dicarboxylate symporter family KQ255_10775 PF08007 Cupin superfamily protein KQ255_10780 PF02545 Maf-like protein KQ255_10790 PF00162 Phosphoglycerate kinase KQ255_10800 PF01116 Fructose-bisphosphate aldolase class-II KQ255_10805 PF09312 SurA N-terminal domain KQ255_10805 PF00639 PPIC-type PPIASE domain KQ255_10810 PF03968 OstA-like protein KQ255_10810 PF04453 LPS transport system D KQ255_10815 PF01636 Phosphotransferase enzyme family KQ255_10820 PF00483 Nucleotidyl transferase KQ255_10825 PF02527 rRNA small subunit methyltransferase G KQ255_10830 PF13614 AAA domain KQ255_10835 PF02195 ParB-like nuclease domain KQ255_10835 PF17762 HTH domain found in ParB protein KQ255_10840 PF01618 MotA/TolQ/ExbB proton channel family KQ255_10850 PF00005 ABC transporter KQ255_10850 PF00664 ABC transporter transmembrane region KQ255_10855 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KQ255_10860 PF02348 Cytidylyltransferase KQ255_10865 PF09115 DNA polymerase III, delta subunit, C terminal KQ255_10875 PF01026 TatD related DNase KQ255_10890 PF07963 Prokaryotic N-terminal methylation motif KQ255_10890 PF02501 Type II secretion system (T2SS), protein I KQ255_10895 PF07963 Prokaryotic N-terminal methylation motif KQ255_10895 PF11612 Type II secretion system (T2SS), protein J KQ255_10900 PF03934 Type II secretion system (T2SS), protein K KQ255_10910 PF03167 Uracil DNA glycosylase superfamily KQ255_10920 PF14437 MafB19-like deaminase KQ255_10930 PF02224 Cytidylate kinase KQ255_10935 PF00575 S1 RNA binding domain KQ255_10940 PF00216 Bacterial DNA-binding protein KQ255_10950 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KQ255_10960 PF00743 Flavin-binding monooxygenase-like KQ255_10970 PF03969 AFG1-like ATPase KQ255_10975 PF00589 Phage integrase family KQ255_10975 PF02899 Phage integrase, N-terminal SAM-like domain KQ255_11065 PF03592 Terminase small subunit KQ255_11065 PF10668 Phage terminase small subunit KQ255_11195 PF01274 Malate synthase KQ255_11205 PF02472 Biopolymer transport protein ExbD/TolR KQ255_11210 PF02472 Biopolymer transport protein ExbD/TolR KQ255_11215 PF01618 MotA/TolQ/ExbB proton channel family KQ255_11220 PF03544 Gram-negative bacterial TonB protein C-terminal KQ255_11225 PF07715 TonB-dependent Receptor Plug Domain KQ255_11225 PF00593 TonB dependent receptor KQ255_11240 PF01432 Peptidase family M3 KQ255_11245 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_11250 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_11255 PF00005 ABC transporter KQ255_11255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KQ255_11270 PF00459 Inositol monophosphatase family KQ255_11280 PF01649 Ribosomal protein S20 KQ255_11285 PF13460 NAD(P)H-binding KQ255_11290 PF03737 Aldolase/RraA KQ255_11310 PF02559 CarD-like/TRCF domain KQ255_11310 PF00270 DEAD/DEAH box helicase KQ255_11310 PF00271 Helicase conserved C-terminal domain KQ255_11310 PF03461 TRCF domain KQ255_11310 PF17757 UvrB interaction domain KQ255_11320 PF00211 Adenylate and Guanylate cyclase catalytic domain KQ255_11325 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_11330 PF00012 Hsp70 protein KQ255_11335 PF07743 HSCB C-terminal oligomerisation domain KQ255_11335 PF00226 DnaJ domain KQ255_11340 PF01521 Iron-sulphur cluster biosynthesis KQ255_11345 PF01592 NifU-like N terminal domain KQ255_11350 PF00266 Aminotransferase class-V KQ255_11355 PF02082 Transcriptional regulator KQ255_11370 PF00216 Bacterial DNA-binding protein KQ255_11375 PF09312 SurA N-terminal domain KQ255_11375 PF00639 PPIC-type PPIASE domain KQ255_11380 PF12852 Cupin KQ255_11380 PF12833 Helix-turn-helix domain KQ255_11385 PF00487 Fatty acid desaturase KQ255_11390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_11390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_11390 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_11395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_11395 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_11395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_11400 PF03109 ABC1 family KQ255_11410 PF04073 Aminoacyl-tRNA editing domain KQ255_11415 PF04183 IucA / IucC family KQ255_11415 PF06276 Ferric iron reductase FhuF-like transporter KQ255_11420 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KQ255_11425 PF07690 Major Facilitator Superfamily KQ255_11430 PF04183 IucA / IucC family KQ255_11430 PF06276 Ferric iron reductase FhuF-like transporter KQ255_11435 PF04183 IucA / IucC family KQ255_11435 PF06276 Ferric iron reductase FhuF-like transporter KQ255_11445 PF03737 Aldolase/RraA KQ255_11450 PF07715 TonB-dependent Receptor Plug Domain KQ255_11450 PF00593 TonB dependent receptor KQ255_11475 PF13419 Haloacid dehalogenase-like hydrolase KQ255_11485 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KQ255_11490 PF02277 Phosphoribosyltransferase KQ255_11495 PF00300 Histidine phosphatase superfamily (branch 1) KQ255_11505 PF02654 Cobalamin-5-phosphate synthase KQ255_11510 PF00793 DAHP synthetase I family KQ255_11515 PF01925 Sulfite exporter TauE/SafE KQ255_11535 PF07715 TonB-dependent Receptor Plug Domain KQ255_11535 PF00593 TonB dependent receptor KQ255_11540 PF02684 Lipid-A-disaccharide synthetase KQ255_11565 PF01230 HIT domain KQ255_11595 PF08241 Methyltransferase domain KQ255_11600 PF00561 alpha/beta hydrolase fold KQ255_11605 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ255_11615 PF02575 YbaB/EbfC DNA-binding family KQ255_11620 PF02132 RecR protein KQ255_11620 PF13662 Toprim domain KQ255_11625 PF01612 3'-5' exonuclease KQ255_11625 PF00570 HRDC domain KQ255_11645 PF05166 YcgL domain KQ255_11655 PF01434 Peptidase family M41 KQ255_11655 PF17862 AAA+ lid domain KQ255_11655 PF00004 ATPase family associated with various cellular activities (AAA) KQ255_11665 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_11670 PF05175 Methyltransferase small domain KQ255_11675 PF01264 Chorismate synthase KQ255_11680 PF08448 PAS fold KQ255_11680 PF00990 Diguanylate cyclase, GGDEF domain KQ255_11695 PF04055 Radical SAM superfamily KQ255_11700 PF00676 Dehydrogenase E1 component KQ255_11705 PF02780 Transketolase, C-terminal domain KQ255_11705 PF02779 Transketolase, pyrimidine binding domain KQ255_11710 PF00364 Biotin-requiring enzyme KQ255_11710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ255_11710 PF02817 e3 binding domain KQ255_11715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ255_11715 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_11720 PF00106 short chain dehydrogenase KQ255_11725 PF08240 Alcohol dehydrogenase GroES-like domain KQ255_11725 PF00107 Zinc-binding dehydrogenase KQ255_11730 PF01062 Bestrophin, RFP-TM, chloride channel KQ255_11735 PF02954 Bacterial regulatory protein, Fis family KQ255_11735 PF00072 Response regulator receiver domain KQ255_11735 PF00158 Sigma-54 interaction domain KQ255_11740 PF00753 Metallo-beta-lactamase superfamily KQ255_11740 PF04273 Putative phosphatase (DUF442) KQ255_11745 PF04273 Putative phosphatase (DUF442) KQ255_11745 PF00753 Metallo-beta-lactamase superfamily KQ255_11750 PF01925 Sulfite exporter TauE/SafE KQ255_11765 PF12833 Helix-turn-helix domain KQ255_11765 PF06445 GyrI-like small molecule binding domain KQ255_11770 PF01638 HxlR-like helix-turn-helix KQ255_11775 PF02525 Flavodoxin-like fold KQ255_11785 PF07702 UTRA domain KQ255_11785 PF00392 Bacterial regulatory proteins, gntR family KQ255_11800 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KQ255_11805 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_11810 PF00005 ABC transporter KQ255_11825 PF00083 Sugar (and other) transporter KQ255_11830 PF07715 TonB-dependent Receptor Plug Domain KQ255_11830 PF00593 TonB dependent receptor KQ255_11835 PF00206 Lyase KQ255_11835 PF10415 Fumarase C C-terminus KQ255_11850 PF03466 LysR substrate binding domain KQ255_11850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_11855 PF03466 LysR substrate binding domain KQ255_11860 PF02803 Thiolase, C-terminal domain KQ255_11860 PF00108 Thiolase, N-terminal domain KQ255_11865 PF02667 Short chain fatty acid transporter KQ255_11870 PF01144 Coenzyme A transferase KQ255_11875 PF01144 Coenzyme A transferase KQ255_11880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_11880 PF03466 LysR substrate binding domain KQ255_11900 PF12833 Helix-turn-helix domain KQ255_11900 PF06719 AraC-type transcriptional regulator N-terminus KQ255_11905 PF07690 Major Facilitator Superfamily KQ255_11910 PF01738 Dienelactone hydrolase family KQ255_11925 PF01613 Flavin reductase like domain KQ255_11935 PF12833 Helix-turn-helix domain KQ255_11935 PF14525 AraC-binding-like domain KQ255_11940 PF00970 Oxidoreductase FAD-binding domain KQ255_11940 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_11940 PF00175 Oxidoreductase NAD-binding domain KQ255_11945 PF00866 Ring hydroxylating beta subunit KQ255_11950 PF00355 Rieske [2Fe-2S] domain KQ255_11950 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ255_11955 PF03459 TOBE domain KQ255_11955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_11965 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_11970 PF00005 ABC transporter KQ255_11970 PF03459 TOBE domain KQ255_11975 PF00106 short chain dehydrogenase KQ255_11980 PF00550 Phosphopantetheine attachment site KQ255_11980 PF00857 Isochorismatase family KQ255_11990 PF00149 Calcineurin-like phosphoesterase KQ255_11995 PF02503 Polyphosphate kinase middle domain KQ255_11995 PF13089 Polyphosphate kinase N-terminal domain KQ255_11995 PF17941 Polyphosphate kinase C-terminal domain 1 KQ255_11995 PF13090 Polyphosphate kinase C-terminal domain 2 KQ255_12000 PF08042 PqqA family KQ255_12005 PF12706 Beta-lactamase superfamily domain KQ255_12010 PF03070 TENA/THI-4/PQQC family KQ255_12015 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KQ255_12020 PF13186 Iron-sulfur cluster-binding domain KQ255_12020 PF04055 Radical SAM superfamily KQ255_12025 PF01244 Membrane dipeptidase (Peptidase family M19) KQ255_12040 PF13091 PLD-like domain KQ255_12055 PF00199 Catalase KQ255_12065 PF00665 Integrase core domain KQ255_12065 PF13936 Helix-turn-helix domain KQ255_12075 PF00107 Zinc-binding dehydrogenase KQ255_12075 PF08240 Alcohol dehydrogenase GroES-like domain KQ255_12090 PF00577 Outer membrane usher protein KQ255_12090 PF13954 PapC N-terminal domain KQ255_12090 PF13953 PapC C-terminal domain KQ255_12095 PF02753 Pili assembly chaperone PapD, C-terminal domain KQ255_12095 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KQ255_12100 PF16970 Type-1 fimbrial protein, A KQ255_12270 PF01266 FAD dependent oxidoreductase KQ255_12280 PF00743 Flavin-binding monooxygenase-like KQ255_12285 PF12146 Serine aminopeptidase, S33 KQ255_12290 PF02321 Outer membrane efflux protein KQ255_12295 PF00873 AcrB/AcrD/AcrF family KQ255_12300 PF00529 HlyD membrane-fusion protein of T1SS KQ255_12300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ255_12305 PF00072 Response regulator receiver domain KQ255_12305 PF00486 Transcriptional regulatory protein, C terminal KQ255_12310 PF00512 His Kinase A (phospho-acceptor) domain KQ255_12310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_12310 PF00672 HAMP domain KQ255_12310 PF16527 Two-component sensor protein CpxA, periplasmic domain KQ255_12320 PF02311 AraC-like ligand binding domain KQ255_12320 PF12833 Helix-turn-helix domain KQ255_12325 PF12146 Serine aminopeptidase, S33 KQ255_12340 PF03466 LysR substrate binding domain KQ255_12340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_12345 PF12146 Serine aminopeptidase, S33 KQ255_12350 PF13673 Acetyltransferase (GNAT) domain KQ255_12380 PF12344 Ultra-violet resistance protein B KQ255_12380 PF00271 Helicase conserved C-terminal domain KQ255_12380 PF04851 Type III restriction enzyme, res subunit KQ255_12380 PF02151 UvrB/uvrC motif KQ255_12380 PF17757 UvrB interaction domain KQ255_12385 PF02824 TGS domain KQ255_12385 PF04607 Region found in RelA / SpoT proteins KQ255_12385 PF13291 ACT domain KQ255_12395 PF01975 Survival protein SurE KQ255_12420 PF07690 Major Facilitator Superfamily KQ255_12430 PF00665 Integrase core domain KQ255_12430 PF13936 Helix-turn-helix domain KQ255_12435 PF01425 Amidase KQ255_12440 PF00196 Bacterial regulatory proteins, luxR family KQ255_12440 PF03472 Autoinducer binding domain KQ255_12455 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KQ255_12460 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KQ255_12460 PF14572 Phosphoribosyl synthetase-associated domain KQ255_12475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ255_12475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ255_12480 PF07690 Major Facilitator Superfamily KQ255_12485 PF01370 NAD dependent epimerase/dehydratase family KQ255_12490 PF03466 LysR substrate binding domain KQ255_12490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_12500 PF00920 Dehydratase family KQ255_12505 PF00171 Aldehyde dehydrogenase family KQ255_12520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ255_12520 PF00529 HlyD membrane-fusion protein of T1SS KQ255_12535 PF03466 LysR substrate binding domain KQ255_12535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_12545 PF08450 SMP-30/Gluconolactonase/LRE-like region KQ255_12550 PF07702 UTRA domain KQ255_12550 PF00392 Bacterial regulatory proteins, gntR family KQ255_12560 PF04909 Amidohydrolase KQ255_12565 PF07690 Major Facilitator Superfamily KQ255_12570 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) KQ255_12610 PF01546 Peptidase family M20/M25/M40 KQ255_12610 PF07687 Peptidase dimerisation domain KQ255_12620 PF00999 Sodium/hydrogen exchanger family KQ255_12620 PF02254 TrkA-N domain KQ255_12625 PF07995 Glucose / Sorbosone dehydrogenase KQ255_12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_12630 PF03466 LysR substrate binding domain KQ255_12635 PF00857 Isochorismatase family KQ255_12650 PF07995 Glucose / Sorbosone dehydrogenase KQ255_12655 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ255_12665 PF06314 Acetoacetate decarboxylase (ADC) KQ255_12675 PF12833 Helix-turn-helix domain KQ255_12675 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ255_12680 PF00440 Bacterial regulatory proteins, tetR family KQ255_12680 PF08359 YsiA-like protein, C-terminal region KQ255_12685 PF12706 Beta-lactamase superfamily domain KQ255_12695 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_12705 PF09278 MerR, DNA binding KQ255_12705 PF00376 MerR family regulatory protein KQ255_12715 PF00106 short chain dehydrogenase KQ255_12720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ255_12720 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_12725 PF00561 alpha/beta hydrolase fold KQ255_12735 PF00171 Aldehyde dehydrogenase family KQ255_12745 PF07690 Major Facilitator Superfamily KQ255_12750 PF00920 Dehydratase family KQ255_12755 PF07729 FCD domain KQ255_12755 PF00392 Bacterial regulatory proteins, gntR family KQ255_12765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_12765 PF03466 LysR substrate binding domain KQ255_12770 PF13378 Enolase C-terminal domain-like KQ255_12770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KQ255_12775 PF02426 Muconolactone delta-isomerase KQ255_12780 PF00775 Dioxygenase KQ255_12780 PF04444 Catechol dioxygenase N terminus KQ255_12785 PF01144 Coenzyme A transferase KQ255_12790 PF01144 Coenzyme A transferase KQ255_12795 PF02803 Thiolase, C-terminal domain KQ255_12795 PF00108 Thiolase, N-terminal domain KQ255_12800 PF12146 Serine aminopeptidase, S33 KQ255_12805 PF01804 Penicillin amidase KQ255_12810 PF00171 Aldehyde dehydrogenase family KQ255_12820 PF02728 Copper amine oxidase, N3 domain KQ255_12820 PF01179 Copper amine oxidase, enzyme domain KQ255_12820 PF02727 Copper amine oxidase, N2 domain KQ255_12820 PF07833 Copper amine oxidase N-terminal domain KQ255_12825 PF12833 Helix-turn-helix domain KQ255_12825 PF02311 AraC-like ligand binding domain KQ255_12830 PF01613 Flavin reductase like domain KQ255_12835 PF00175 Oxidoreductase NAD-binding domain KQ255_12835 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_12850 PF00355 Rieske [2Fe-2S] domain KQ255_12850 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ255_12865 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ255_12870 PF01425 Amidase KQ255_12880 PF07690 Major Facilitator Superfamily KQ255_12890 PF00106 short chain dehydrogenase KQ255_12905 PF09339 IclR helix-turn-helix domain KQ255_12905 PF01614 Bacterial transcriptional regulator KQ255_12910 PF00753 Metallo-beta-lactamase superfamily KQ255_12920 PF04143 Sulphur transport KQ255_12930 PF01011 PQQ enzyme repeat KQ255_12930 PF13360 PQQ-like domain KQ255_12935 PF04966 Carbohydrate-selective porin, OprB family KQ255_12940 PF05048 Periplasmic copper-binding protein (NosD) KQ255_12945 PF01487 Type I 3-dehydroquinase KQ255_12950 PF00775 Dioxygenase KQ255_12955 PF00775 Dioxygenase KQ255_12955 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KQ255_12960 PF02627 Carboxymuconolactone decarboxylase family KQ255_12965 PF07690 Major Facilitator Superfamily KQ255_12970 PF00561 alpha/beta hydrolase fold KQ255_12975 PF10397 Adenylosuccinate lyase C-terminus KQ255_12975 PF00206 Lyase KQ255_12980 PF00108 Thiolase, N-terminal domain KQ255_12980 PF02803 Thiolase, C-terminal domain KQ255_12985 PF01144 Coenzyme A transferase KQ255_12990 PF01144 Coenzyme A transferase KQ255_12995 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KQ255_13000 PF04977 Septum formation initiator KQ255_13005 PF04239 Protein of unknown function (DUF421) KQ255_13010 PF00113 Enolase, C-terminal TIM barrel domain KQ255_13010 PF03952 Enolase, N-terminal domain KQ255_13015 PF00793 DAHP synthetase I family KQ255_13020 PF06418 CTP synthase N-terminus KQ255_13020 PF00117 Glutamine amidotransferase class-I KQ255_13050 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_13050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ255_13065 PF00793 DAHP synthetase I family KQ255_13070 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KQ255_13075 PF10431 C-terminal, D2-small domain, of ClpB protein KQ255_13075 PF07724 AAA domain (Cdc48 subfamily) KQ255_13075 PF00004 ATPase family associated with various cellular activities (AAA) KQ255_13075 PF17871 AAA lid domain KQ255_13075 PF02861 Clp amino terminal domain, pathogenicity island component KQ255_13080 PF02617 ATP-dependent Clp protease adaptor protein ClpS KQ255_13090 PF02774 Semialdehyde dehydrogenase, dimerisation domain KQ255_13090 PF01118 Semialdehyde dehydrogenase, NAD binding domain KQ255_13105 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KQ255_13110 PF00585 C-terminal regulatory domain of Threonine dehydratase KQ255_13110 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_13115 PF02080 TrkA-C domain KQ255_13115 PF02254 TrkA-N domain KQ255_13120 PF02386 Cation transport protein KQ255_13125 PF02253 Phospholipase A1 KQ255_13130 PF08367 Peptidase M16C associated KQ255_13130 PF00675 Insulinase (Peptidase family M16) KQ255_13130 PF05193 Peptidase M16 inactive domain KQ255_13135 PF00593 TonB dependent receptor KQ255_13135 PF07715 TonB-dependent Receptor Plug Domain KQ255_13140 PF00294 pfkB family carbohydrate kinase KQ255_13150 PF07290 Protein of unknown function (DUF1449) KQ255_13160 PF01654 Cytochrome bd terminal oxidase subunit I KQ255_13165 PF02322 Cytochrome bd terminal oxidase subunit II KQ255_13170 PF08173 Membrane bound YbgT-like protein KQ255_13180 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KQ255_13190 PF00448 SRP54-type protein, GTPase domain KQ255_13190 PF02881 SRP54-type protein, helical bundle domain KQ255_13215 PF00571 CBS domain KQ255_13215 PF00478 IMP dehydrogenase / GMP reductase domain KQ255_13220 PF00202 Aminotransferase class-III KQ255_13225 PF00462 Glutaredoxin KQ255_13235 PF03466 LysR substrate binding domain KQ255_13235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_13240 PF00557 Metallopeptidase family M24 KQ255_13245 PF05525 Branched-chain amino acid transport protein KQ255_13270 PF05524 PEP-utilising enzyme, N-terminal KQ255_13270 PF00391 PEP-utilising enzyme, mobile domain KQ255_13270 PF02896 PEP-utilising enzyme, TIM barrel domain KQ255_13270 PF00381 PTS HPr component phosphorylation site KQ255_13270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KQ255_13275 PF00294 pfkB family carbohydrate kinase KQ255_13280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KQ255_13280 PF02378 Phosphotransferase system, EIIC KQ255_13300 PF00990 Diguanylate cyclase, GGDEF domain KQ255_13300 PF00563 EAL domain KQ255_13300 PF03707 Bacterial signalling protein N terminal repeat KQ255_13315 PF13936 Helix-turn-helix domain KQ255_13315 PF00665 Integrase core domain KQ255_13320 PF07995 Glucose / Sorbosone dehydrogenase KQ255_13325 PF02586 SOS response associated peptidase (SRAP) KQ255_13330 PF00916 Sulfate permease family KQ255_13330 PF01740 STAS domain KQ255_13335 PF00082 Subtilase family KQ255_13335 PF05922 Peptidase inhibitor I9 KQ255_13345 PF00324 Amino acid permease KQ255_13350 PF00266 Aminotransferase class-V KQ255_13355 PF01037 Lrp/AsnC ligand binding domain KQ255_13380 PF13419 Haloacid dehalogenase-like hydrolase KQ255_13385 PF01479 S4 domain KQ255_13390 PF00154 recA bacterial DNA recombination protein KQ255_13395 PF02631 RecX family KQ255_13410 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KQ255_13410 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_13415 PF07977 FabA-like domain KQ255_13420 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_13420 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KQ255_13430 PF01103 Surface antigen KQ255_13430 PF07244 Surface antigen variable number repeat KQ255_13435 PF02163 Peptidase family M50 KQ255_13435 PF17820 PDZ domain KQ255_13435 PF13180 PDZ domain KQ255_13440 PF13288 DXP reductoisomerase C-terminal domain KQ255_13440 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KQ255_13440 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KQ255_13450 PF01255 Putative undecaprenyl diphosphate synthase KQ255_13455 PF01765 Ribosome recycling factor KQ255_13460 PF00696 Amino acid kinase family KQ255_13465 PF18693 TRAM domain KQ255_13465 PF00919 Uncharacterized protein family UPF0004 KQ255_13465 PF04055 Radical SAM superfamily KQ255_13475 PF00989 PAS fold KQ255_13475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_13475 PF00512 His Kinase A (phospho-acceptor) domain KQ255_13480 PF02954 Bacterial regulatory protein, Fis family KQ255_13480 PF00072 Response regulator receiver domain KQ255_13480 PF00158 Sigma-54 interaction domain KQ255_13485 PF00440 Bacterial regulatory proteins, tetR family KQ255_13495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KQ255_13495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KQ255_13505 PF02542 YgbB family KQ255_13515 PF01266 FAD dependent oxidoreductase KQ255_13535 PF10415 Fumarase C C-terminus KQ255_13535 PF00206 Lyase KQ255_13540 PF16363 GDP-mannose 4,6 dehydratase KQ255_13545 PF02635 DsrE/DsrF-like family KQ255_13565 PF00892 EamA-like transporter family KQ255_13570 PF00392 Bacterial regulatory proteins, gntR family KQ255_13570 PF00155 Aminotransferase class I and II KQ255_13575 PF01638 HxlR-like helix-turn-helix KQ255_13580 PF03454 MoeA C-terminal region (domain IV) KQ255_13580 PF00994 Probable molybdopterin binding domain KQ255_13580 PF03453 MoeA N-terminal region (domain I and II) KQ255_13585 PF00994 Probable molybdopterin binding domain KQ255_13585 PF01967 MoaC family KQ255_13590 PF02391 MoaE protein KQ255_13600 PF04055 Radical SAM superfamily KQ255_13600 PF06463 Molybdenum Cofactor Synthesis C KQ255_13605 PF00384 Molybdopterin oxidoreductase KQ255_13605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ255_13605 PF01568 Molydopterin dinucleotide binding domain KQ255_13610 PF12804 MobA-like NTP transferase domain KQ255_13615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ255_13615 PF00384 Molybdopterin oxidoreductase KQ255_13615 PF01568 Molydopterin dinucleotide binding domain KQ255_13615 PF04324 BFD-like [2Fe-2S] binding domain KQ255_13620 PF04324 BFD-like [2Fe-2S] binding domain KQ255_13620 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ255_13620 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ255_13620 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_13620 PF18267 Rubredoxin NAD+ reductase C-terminal domain KQ255_13625 PF18267 Rubredoxin NAD+ reductase C-terminal domain KQ255_13625 PF13806 Rieske-like [2Fe-2S] domain KQ255_13625 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ255_13625 PF04324 BFD-like [2Fe-2S] binding domain KQ255_13625 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_13625 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ255_13635 PF00072 Response regulator receiver domain KQ255_13635 PF00486 Transcriptional regulatory protein, C terminal KQ255_13640 PF00005 ABC transporter KQ255_13650 PF13438 Domain of unknown function (DUF4113) KQ255_13650 PF11799 impB/mucB/samB family C-terminal domain KQ255_13650 PF00817 impB/mucB/samB family KQ255_13655 PF01220 Dehydroquinase class II KQ255_13660 PF00364 Biotin-requiring enzyme KQ255_13665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ255_13665 PF00289 Biotin carboxylase, N-terminal domain KQ255_13665 PF02785 Biotin carboxylase C-terminal domain KQ255_13675 PF12832 MFS_1 like family KQ255_13695 PF01645 Conserved region in glutamate synthase KQ255_13710 PF01565 FAD binding domain KQ255_13710 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KQ255_13715 PF01451 Low molecular weight phosphotyrosine protein phosphatase KQ255_13725 PF00465 Iron-containing alcohol dehydrogenase KQ255_13730 PF03061 Thioesterase superfamily KQ255_13735 PF04185 Phosphoesterase family KQ255_13735 PF05506 Domain of unknown function (DUF756) KQ255_13740 PF12169 DNA polymerase III subunits gamma and tau domain III KQ255_13740 PF12170 DNA polymerase III tau subunit V interacting with alpha KQ255_13740 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KQ255_13745 PF07690 Major Facilitator Superfamily KQ255_13755 PF00144 Beta-lactamase KQ255_13760 PF01575 MaoC like domain KQ255_13770 PF02803 Thiolase, C-terminal domain KQ255_13770 PF00108 Thiolase, N-terminal domain KQ255_13780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_13780 PF03466 LysR substrate binding domain KQ255_13785 PF00923 Transaldolase/Fructose-6-phosphate aldolase KQ255_13790 PF01810 LysE type translocator KQ255_13795 PF01037 Lrp/AsnC ligand binding domain KQ255_13800 PF03594 Benzoate membrane transport protein KQ255_13805 PF02308 MgtC family KQ255_13810 PF00690 Cation transporter/ATPase, N-terminus KQ255_13810 PF00689 Cation transporting ATPase, C-terminus KQ255_13830 PF00582 Universal stress protein family KQ255_13835 PF12848 ABC transporter KQ255_13835 PF00005 ABC transporter KQ255_13855 PF07715 TonB-dependent Receptor Plug Domain KQ255_13855 PF00593 TonB dependent receptor KQ255_13885 PF00924 Mechanosensitive ion channel KQ255_13890 PF00593 TonB dependent receptor KQ255_13890 PF07715 TonB-dependent Receptor Plug Domain KQ255_13895 PF00440 Bacterial regulatory proteins, tetR family KQ255_13910 PF02224 Cytidylate kinase KQ255_13920 PF01037 Lrp/AsnC ligand binding domain KQ255_13925 PF01817 Chorismate mutase type II KQ255_13950 PF13953 PapC C-terminal domain KQ255_13950 PF13954 PapC N-terminal domain KQ255_13950 PF00577 Outer membrane usher protein KQ255_13965 PF01433 Peptidase family M1 domain KQ255_13965 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KQ255_13965 PF11940 Domain of unknown function (DUF3458) Ig-like fold KQ255_13980 PF02110 Hydroxyethylthiazole kinase family KQ255_13990 PF05970 PIF1-like helicase KQ255_13990 PF14493 Helix-turn-helix domain KQ255_13995 PF00465 Iron-containing alcohol dehydrogenase KQ255_14010 PF00171 Aldehyde dehydrogenase family KQ255_14015 PF13520 Amino acid permease KQ255_14020 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KQ255_14025 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KQ255_14030 PF00117 Glutamine amidotransferase class-I KQ255_14030 PF00958 GMP synthase C terminal domain KQ255_14030 PF02540 NAD synthase KQ255_14035 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ255_14035 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KQ255_14040 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KQ255_14045 PF00149 Calcineurin-like phosphoesterase KQ255_14055 PF00881 Nitroreductase family KQ255_14065 PF17209 Hfq protein KQ255_14075 PF01119 DNA mismatch repair protein, C-terminal domain KQ255_14075 PF08676 MutL C terminal dimerisation domain KQ255_14080 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KQ255_14085 PF00849 RNA pseudouridylate synthase KQ255_14085 PF01479 S4 domain KQ255_14100 PF00849 RNA pseudouridylate synthase KQ255_14100 PF01479 S4 domain KQ255_14110 PF04284 Protein of unknown function (DUF441) KQ255_14115 PF03466 LysR substrate binding domain KQ255_14115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_14155 PF00216 Bacterial DNA-binding protein KQ255_14185 PF01471 Putative peptidoglycan binding domain KQ255_14185 PF13401 AAA domain KQ255_14255 PF03237 Terminase-like family KQ255_14265 PF06074 Protein of unknown function (DUF935) KQ255_14270 PF04233 Phage Mu protein F like protein KQ255_14275 PF05069 Phage virion morphogenesis family KQ255_14290 PF10124 Mu-like prophage major head subunit gpT KQ255_14380 PF07690 Major Facilitator Superfamily KQ255_14385 PF00027 Cyclic nucleotide-binding domain KQ255_14385 PF00520 Ion transport protein KQ255_14395 PF11791 Aconitate B N-terminal domain KQ255_14395 PF06434 Aconitate hydratase 2 N-terminus KQ255_14395 PF00330 Aconitase family (aconitate hydratase) KQ255_14410 PF17243 POTRA domain TamA domain 1 KQ255_14410 PF01103 Surface antigen KQ255_14410 PF07244 Surface antigen variable number repeat KQ255_14415 PF07690 Major Facilitator Superfamily KQ255_14420 PF03232 Ubiquinone biosynthesis protein COQ7 KQ255_14430 PF00120 Glutamine synthetase, catalytic domain KQ255_14435 PF00486 Transcriptional regulatory protein, C terminal KQ255_14435 PF00072 Response regulator receiver domain KQ255_14440 PF02702 Osmosensitive K+ channel His kinase sensor domain KQ255_14440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_14440 PF00512 His Kinase A (phospho-acceptor) domain KQ255_14440 PF13493 Domain of unknown function (DUF4118) KQ255_14445 PF02669 K+-transporting ATPase, c chain KQ255_14455 PF03814 Potassium-transporting ATPase A subunit KQ255_14470 PF03109 ABC1 family KQ255_14475 PF00899 ThiF family KQ255_14480 PF01613 Flavin reductase like domain KQ255_14485 PF13193 AMP-binding enzyme C-terminal domain KQ255_14485 PF00501 AMP-binding enzyme KQ255_14490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_14490 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_14490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_14495 PF00106 short chain dehydrogenase KQ255_14500 PF12833 Helix-turn-helix domain KQ255_14505 PF09084 NMT1/THI5 like KQ255_14510 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_14515 PF13847 Methyltransferase domain KQ255_14515 PF17827 PrmC N-terminal domain KQ255_14520 PF03462 PCRF domain KQ255_14520 PF00472 RF-1 domain KQ255_14530 PF03466 LysR substrate binding domain KQ255_14530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_14545 PF00296 Luciferase-like monooxygenase KQ255_14555 PF13994 PgaD-like protein KQ255_14560 PF00535 Glycosyl transferase family 2 KQ255_14565 PF01522 Polysaccharide deacetylase KQ255_14565 PF14883 Hypothetical glycosyl hydrolase family 13 KQ255_14575 PF03618 Kinase/pyrophosphorylase KQ255_14580 PF00391 PEP-utilising enzyme, mobile domain KQ255_14580 PF02896 PEP-utilising enzyme, TIM barrel domain KQ255_14580 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KQ255_14590 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KQ255_14590 PF06481 COX Aromatic Rich Motif KQ255_14595 PF00115 Cytochrome C and Quinol oxidase polypeptide I KQ255_14600 PF00510 Cytochrome c oxidase subunit III KQ255_14605 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KQ255_14610 PF01040 UbiA prenyltransferase family KQ255_14615 PF01250 Ribosomal protein S6 KQ255_14620 PF01084 Ribosomal protein S18 KQ255_14625 PF03948 Ribosomal protein L9, C-terminal domain KQ255_14625 PF01281 Ribosomal protein L9, N-terminal domain KQ255_14630 PF00772 DnaB-like helicase N terminal domain KQ255_14630 PF03796 DnaB-like helicase C terminal domain KQ255_14635 PF00842 Alanine racemase, C-terminal domain KQ255_14635 PF01168 Alanine racemase, N-terminal domain KQ255_14645 PF01841 Transglutaminase-like superfamily KQ255_14645 PF08379 Bacterial transglutaminase-like N-terminal region KQ255_14655 PF14403 Circularly permuted ATP-grasp type 2 KQ255_14665 PF01134 Glucose inhibited division protein A KQ255_14665 PF13932 GidA associated domain KQ255_14695 PF02954 Bacterial regulatory protein, Fis family KQ255_14700 PF01808 AICARFT/IMPCHase bienzyme KQ255_14700 PF02142 MGS-like domain KQ255_14705 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KQ255_14705 PF02843 Phosphoribosylglycinamide synthetase, C domain KQ255_14705 PF02844 Phosphoribosylglycinamide synthetase, N domain KQ255_14710 PF03180 NLPA lipoprotein KQ255_14715 PF09383 NIL domain KQ255_14715 PF00005 ABC transporter KQ255_14720 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_14725 PF16123 Hydroxyacylglutathione hydrolase C-terminus KQ255_14725 PF00753 Metallo-beta-lactamase superfamily KQ255_14735 PF00375 Sodium:dicarboxylate symporter family KQ255_14755 PF07995 Glucose / Sorbosone dehydrogenase KQ255_14760 PF00892 EamA-like transporter family KQ255_14765 PF01177 Asp/Glu/Hydantoin racemase KQ255_14785 PF00486 Transcriptional regulatory protein, C terminal KQ255_14785 PF00072 Response regulator receiver domain KQ255_14790 PF08521 Two-component sensor kinase N-terminal KQ255_14790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_14790 PF00512 His Kinase A (phospho-acceptor) domain KQ255_14830 PF00672 HAMP domain KQ255_14830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_14830 PF00512 His Kinase A (phospho-acceptor) domain KQ255_14835 PF00486 Transcriptional regulatory protein, C terminal KQ255_14835 PF00072 Response regulator receiver domain KQ255_14845 PF00576 HIUase/Transthyretin family KQ255_14855 PF02470 MlaD protein KQ255_14860 PF04403 Paraquat-inducible protein A KQ255_14885 PF08946 Osmosensory transporter coiled coil KQ255_14885 PF00083 Sugar (and other) transporter KQ255_14945 PF00392 Bacterial regulatory proteins, gntR family KQ255_14945 PF07729 FCD domain KQ255_14960 PF00106 short chain dehydrogenase KQ255_14965 PF00248 Aldo/keto reductase family KQ255_14970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_14970 PF03466 LysR substrate binding domain KQ255_14980 PF03616 Sodium/glutamate symporter KQ255_14985 PF00561 alpha/beta hydrolase fold KQ255_15010 PF04076 Bacterial OB fold (BOF) protein KQ255_15040 PF00324 Amino acid permease KQ255_15045 PF00171 Aldehyde dehydrogenase family KQ255_15050 PF00202 Aminotransferase class-III KQ255_15055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_15055 PF03466 LysR substrate binding domain KQ255_15080 PF00069 Protein kinase domain KQ255_15100 PF00814 Glycoprotease family KQ255_15105 PF01165 Ribosomal protein S21 KQ255_15110 PF09424 Yqey-like protein KQ255_15115 PF01435 Peptidase family M48 KQ255_15120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ255_15120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ255_15135 PF00156 Phosphoribosyl transferase domain KQ255_15140 PF02674 Colicin V production protein KQ255_15145 PF01180 Dihydroorotate dehydrogenase KQ255_15235 PF00583 Acetyltransferase (GNAT) family KQ255_15335 PF00717 Peptidase S24-like KQ255_15395 PF00589 Phage integrase family KQ255_15405 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KQ255_15405 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KQ255_15410 PF00881 Nitroreductase family KQ255_15420 PF00270 DEAD/DEAH box helicase KQ255_15420 PF00271 Helicase conserved C-terminal domain KQ255_15425 PF00313 'Cold-shock' DNA-binding domain KQ255_15435 PF00140 Sigma-70 factor, region 1.2 KQ255_15435 PF04542 Sigma-70 region 2 KQ255_15435 PF04545 Sigma-70, region 4 KQ255_15440 PF04241 Protein of unknown function (DUF423) KQ255_15450 PF05690 Thiazole biosynthesis protein ThiG KQ255_15455 PF03883 Peroxide stress protein YaaA KQ255_15465 PF00753 Metallo-beta-lactamase superfamily KQ255_15470 PF07687 Peptidase dimerisation domain KQ255_15470 PF01546 Peptidase family M20/M25/M40 KQ255_15480 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KQ255_15485 PF01817 Chorismate mutase type II KQ255_15485 PF01842 ACT domain KQ255_15485 PF00800 Prephenate dehydratase KQ255_15490 PF00756 Putative esterase KQ255_15495 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_15495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_15495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_15500 PF00375 Sodium:dicarboxylate symporter family KQ255_15505 PF02885 Glycosyl transferase family, helical bundle domain KQ255_15505 PF00591 Glycosyl transferase family, a/b domain KQ255_15510 PF07023 Protein of unknown function (DUF1315) KQ255_15515 PF01513 ATP-NAD kinase KQ255_15520 PF00912 Transglycosylase KQ255_15520 PF00905 Penicillin binding protein transpeptidase domain KQ255_15520 PF14814 Bifunctional transglycosylase second domain KQ255_15530 PF00293 NUDIX domain KQ255_15540 PF08521 Two-component sensor kinase N-terminal KQ255_15540 PF00512 His Kinase A (phospho-acceptor) domain KQ255_15540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_15545 PF00486 Transcriptional regulatory protein, C terminal KQ255_15545 PF00072 Response regulator receiver domain KQ255_15555 PF00437 Type II/IV secretion system protein KQ255_15555 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KQ255_15565 PF01980 tRNA-methyltransferase O KQ255_15565 PF18389 TrmO C-terminal domain KQ255_15570 PF00970 Oxidoreductase FAD-binding domain KQ255_15570 PF00175 Oxidoreductase NAD-binding domain KQ255_15575 PF02567 Phenazine biosynthesis-like protein KQ255_15580 PF00155 Aminotransferase class I and II KQ255_15580 PF00392 Bacterial regulatory proteins, gntR family KQ255_15585 PF01136 Peptidase family U32 KQ255_15585 PF16325 Peptidase family U32 C-terminal domain KQ255_15590 PF00037 4Fe-4S binding domain KQ255_15595 PF00893 Small Multidrug Resistance protein KQ255_15600 PF00005 ABC transporter KQ255_15605 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_15610 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_15615 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ255_15620 PF03466 LysR substrate binding domain KQ255_15620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_15625 PF13533 Biotin-lipoyl like KQ255_15630 PF00873 AcrB/AcrD/AcrF family KQ255_15635 PF02321 Outer membrane efflux protein KQ255_15640 PF00464 Serine hydroxymethyltransferase KQ255_15940 PF03796 DnaB-like helicase C terminal domain KQ255_15940 PF00772 DnaB-like helicase N terminal domain KQ255_16050 PF00589 Phage integrase family KQ255_16055 PF00005 ABC transporter KQ255_16060 PF01061 ABC-2 type transporter KQ255_16065 PF14489 QueF-like protein KQ255_16065 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KQ255_16075 PF01098 Cell cycle protein KQ255_16080 PF13406 Transglycosylase SLT domain KQ255_16085 PF03330 Lytic transglycolase KQ255_16085 PF05036 Sporulation related domain KQ255_16105 PF12833 Helix-turn-helix domain KQ255_16115 PF00889 Elongation factor TS KQ255_16120 PF00318 Ribosomal protein S2 KQ255_16125 PF00557 Metallopeptidase family M24 KQ255_16135 PF07690 Major Facilitator Superfamily KQ255_16145 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_16145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ255_16150 PF04055 Radical SAM superfamily KQ255_16155 PF09317 Domain of unknown function (DUF1974) KQ255_16155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_16155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_16170 PF05221 S-adenosyl-L-homocysteine hydrolase KQ255_16170 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KQ255_16175 PF02219 Methylenetetrahydrofolate reductase KQ255_16180 PF04452 RNA methyltransferase KQ255_16185 PF13936 Helix-turn-helix domain KQ255_16185 PF00665 Integrase core domain KQ255_16190 PF00563 EAL domain KQ255_16190 PF00990 Diguanylate cyclase, GGDEF domain KQ255_16190 PF03707 Bacterial signalling protein N terminal repeat KQ255_16195 PF03949 Malic enzyme, NAD binding domain KQ255_16195 PF01515 Phosphate acetyl/butaryl transferase KQ255_16195 PF00390 Malic enzyme, N-terminal domain KQ255_16200 PF12627 Probable RNA and SrmB- binding site of polymerase A KQ255_16200 PF01743 Poly A polymerase head domain KQ255_16205 PF13180 PDZ domain KQ255_16210 PF01784 NIF3 (NGG1p interacting factor 3) KQ255_16215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KQ255_16215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KQ255_16250 PF01040 UbiA prenyltransferase family KQ255_16255 PF04345 Chorismate lyase KQ255_16260 PF00120 Glutamine synthetase, catalytic domain KQ255_16260 PF03951 Glutamine synthetase, beta-Grasp domain KQ255_16265 PF00854 POT family KQ255_16275 PF00117 Glutamine amidotransferase class-I KQ255_16280 PF01433 Peptidase family M1 domain KQ255_16280 PF11838 ERAP1-like C-terminal domain KQ255_16285 PF07715 TonB-dependent Receptor Plug Domain KQ255_16285 PF00593 TonB dependent receptor KQ255_16290 PF02885 Glycosyl transferase family, helical bundle domain KQ255_16290 PF00591 Glycosyl transferase family, a/b domain KQ255_16295 PF00218 Indole-3-glycerol phosphate synthase KQ255_16310 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KQ255_16310 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KQ255_16315 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_16315 PF01799 [2Fe-2S] binding domain KQ255_16320 PF01227 GTP cyclohydrolase I KQ255_16330 PF00144 Beta-lactamase KQ255_16345 PF05675 Protein of unknown function (DUF817) KQ255_16350 PF01208 Uroporphyrinogen decarboxylase (URO-D) KQ255_16360 PF00425 chorismate binding enzyme KQ255_16370 PF00975 Thioesterase domain KQ255_16375 PF00005 ABC transporter KQ255_16380 PF00664 ABC transporter transmembrane region KQ255_16380 PF00005 ABC transporter KQ255_16390 PF00282 Pyridoxal-dependent decarboxylase conserved domain KQ255_16395 PF00550 Phosphopantetheine attachment site KQ255_16395 PF00857 Isochorismatase family KQ255_16400 PF00501 AMP-binding enzyme KQ255_16400 PF13193 AMP-binding enzyme C-terminal domain KQ255_16405 PF00550 Phosphopantetheine attachment site KQ255_16405 PF00668 Condensation domain KQ255_16405 PF00501 AMP-binding enzyme KQ255_16410 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KQ255_16415 PF07715 TonB-dependent Receptor Plug Domain KQ255_16415 PF00593 TonB dependent receptor KQ255_16420 PF01497 Periplasmic binding protein KQ255_16425 PF00005 ABC transporter KQ255_16430 PF01032 FecCD transport family KQ255_16435 PF01032 FecCD transport family KQ255_16440 PF00975 Thioesterase domain KQ255_16440 PF00550 Phosphopantetheine attachment site KQ255_16440 PF00501 AMP-binding enzyme KQ255_16440 PF13193 AMP-binding enzyme C-terminal domain KQ255_16440 PF00668 Condensation domain KQ255_16445 PF00501 AMP-binding enzyme KQ255_16445 PF13193 AMP-binding enzyme C-terminal domain KQ255_16445 PF00668 Condensation domain KQ255_16445 PF00550 Phosphopantetheine attachment site KQ255_16455 PF13309 HTH domain KQ255_16455 PF08348 YheO-like PAS domain KQ255_16460 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_16465 PF02678 Pirin KQ255_16465 PF17954 Quercetinase C-terminal cupin domain KQ255_16495 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system KQ255_16510 PF00665 Integrase core domain KQ255_16510 PF13936 Helix-turn-helix domain KQ255_16535 PF01266 FAD dependent oxidoreductase KQ255_16535 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KQ255_16540 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_16540 PF18113 Rubredoxin binding C-terminal domain KQ255_16545 PF00171 Aldehyde dehydrogenase family KQ255_16550 PF00355 Rieske [2Fe-2S] domain KQ255_16550 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ255_16555 PF02028 BCCT, betaine/carnitine/choline family transporter KQ255_16560 PF02028 BCCT, betaine/carnitine/choline family transporter KQ255_16565 PF00557 Metallopeptidase family M24 KQ255_16570 PF03466 LysR substrate binding domain KQ255_16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_16580 PF04328 Selenoprotein, putative KQ255_16585 PF13722 5TM C-terminal transporter carbon starvation CstA KQ255_16585 PF02554 Carbon starvation protein CstA KQ255_16590 PF08207 Elongation factor P (EF-P) KOW-like domain KQ255_16590 PF01132 Elongation factor P (EF-P) OB domain KQ255_16590 PF09285 Elongation factor P, C-terminal KQ255_16595 PF04055 Radical SAM superfamily KQ255_16605 PF00563 EAL domain KQ255_16605 PF12792 CSS motif domain associated with EAL KQ255_16610 PF01197 Ribosomal protein L31 KQ255_16615 PF13593 SBF-like CPA transporter family (DUF4137) KQ255_16620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ255_16625 PF07690 Major Facilitator Superfamily KQ255_16630 PF13654 AAA domain KQ255_16630 PF05362 Lon protease (S16) C-terminal proteolytic domain KQ255_16635 PF03466 LysR substrate binding domain KQ255_16635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_16640 PF01476 LysM domain KQ255_16640 PF01551 Peptidase family M23 KQ255_16645 PF01975 Survival protein SurE KQ255_16660 PF00768 D-alanyl-D-alanine carboxypeptidase KQ255_16660 PF07943 Penicillin-binding protein 5, C-terminal domain KQ255_16665 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_16670 PF00293 NUDIX domain KQ255_16670 PF13344 Haloacid dehalogenase-like hydrolase KQ255_16680 PF04356 Protein of unknown function (DUF489) KQ255_16685 PF08328 Adenylosuccinate lyase C-terminal KQ255_16685 PF00206 Lyase KQ255_16700 PF01343 Peptidase family S49 KQ255_16700 PF08496 Peptidase family S49 N-terminal KQ255_16705 PF00005 ABC transporter KQ255_16710 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_16715 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_16720 PF12849 PBP superfamily domain KQ255_16725 PF00324 Amino acid permease KQ255_16730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ255_16730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ255_16730 PF00205 Thiamine pyrophosphate enzyme, central domain KQ255_16735 PF01037 Lrp/AsnC ligand binding domain KQ255_16740 PF00171 Aldehyde dehydrogenase family KQ255_16745 PF00282 Pyridoxal-dependent decarboxylase conserved domain KQ255_16750 PF00202 Aminotransferase class-III KQ255_16760 PF17754 MftR C-terminal domain KQ255_16760 PF00440 Bacterial regulatory proteins, tetR family KQ255_16770 PF00487 Fatty acid desaturase KQ255_16775 PF00970 Oxidoreductase FAD-binding domain KQ255_16775 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ255_16775 PF00175 Oxidoreductase NAD-binding domain KQ255_16780 PF00440 Bacterial regulatory proteins, tetR family KQ255_16790 PF18337 RapA N-terminal Tudor like domain KQ255_16790 PF12137 RNA polymerase recycling family C-terminal KQ255_16790 PF00176 SNF2 family N-terminal domain KQ255_16790 PF00271 Helicase conserved C-terminal domain KQ255_16790 PF18339 RapA N-terminal Tudor like domain 1 KQ255_16795 PF00849 RNA pseudouridylate synthase KQ255_16805 PF00202 Aminotransferase class-III KQ255_16810 PF02581 Thiamine monophosphate synthase KQ255_16820 PF09615 CRISPR-associated protein (Cas_Csy3) KQ255_16825 PF09614 CRISPR-associated protein (Cas_Csy2) KQ255_16830 PF09611 CRISPR-associated protein (Cas_Csy1) KQ255_16840 PF01867 CRISPR associated protein Cas1 KQ255_16865 PF00675 Insulinase (Peptidase family M16) KQ255_16865 PF05193 Peptidase M16 inactive domain KQ255_16870 PF02567 Phenazine biosynthesis-like protein KQ255_16875 PF00375 Sodium:dicarboxylate symporter family KQ255_16880 PF03466 LysR substrate binding domain KQ255_16880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_16885 PF06779 Uncharacterised MFS-type transporter YbfB KQ255_16905 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ255_16910 PF00849 RNA pseudouridylate synthase KQ255_16915 PF03971 Monomeric isocitrate dehydrogenase KQ255_16925 PF00768 D-alanyl-D-alanine carboxypeptidase KQ255_16925 PF07943 Penicillin-binding protein 5, C-terminal domain KQ255_16930 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_16935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ255_16940 PF00875 DNA photolyase KQ255_16940 PF03441 FAD binding domain of DNA photolyase KQ255_16970 PF02350 UDP-N-acetylglucosamine 2-epimerase KQ255_16985 PF03060 Nitronate monooxygenase KQ255_16990 PF01207 Dihydrouridine synthase (Dus) KQ255_16995 PF07759 Protein of unknown function (DUF1615) KQ255_17005 PF00696 Amino acid kinase family KQ255_17005 PF01472 PUA domain KQ255_17010 PF01018 GTP1/OBG KQ255_17010 PF01926 50S ribosome-binding GTPase KQ255_17025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KQ255_17025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KQ255_17030 PF00892 EamA-like transporter family KQ255_17040 PF17757 UvrB interaction domain KQ255_17040 PF12344 Ultra-violet resistance protein B KQ255_17040 PF02151 UvrB/uvrC motif KQ255_17040 PF04851 Type III restriction enzyme, res subunit KQ255_17040 PF00271 Helicase conserved C-terminal domain KQ255_17050 PF00990 Diguanylate cyclase, GGDEF domain KQ255_17050 PF17151 Periplasmic sensor domain KQ255_17060 PF00155 Aminotransferase class I and II KQ255_17090 PF00106 short chain dehydrogenase KQ255_17095 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KQ255_17100 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KQ255_17105 PF02565 Recombination protein O C terminal KQ255_17105 PF11967 Recombination protein O N terminal KQ255_17115 PF01926 50S ribosome-binding GTPase KQ255_17115 PF07650 KH domain KQ255_17120 PF14622 Ribonuclease-III-like KQ255_17120 PF00035 Double-stranded RNA binding motif KQ255_17130 PF10502 Signal peptidase, peptidase S26 KQ255_17135 PF06421 GTP-binding protein LepA C-terminus KQ255_17135 PF00009 Elongation factor Tu GTP binding domain KQ255_17135 PF00679 Elongation factor G C-terminus KQ255_17135 PF03144 Elongation factor Tu domain 2 KQ255_17145 PF13180 PDZ domain KQ255_17150 PF00890 FAD binding domain KQ255_17150 PF02910 Fumarate reductase flavoprotein C-term KQ255_17160 PF02223 Thymidylate kinase KQ255_17165 PF02618 YceG-like family KQ255_17170 PF01063 Amino-transferase class IV KQ255_17185 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_17190 PF00528 Binding-protein-dependent transport system inner membrane component KQ255_17195 PF00005 ABC transporter KQ255_17195 PF12857 TOBE-like domain KQ255_17200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_17200 PF03466 LysR substrate binding domain KQ255_17210 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KQ255_17210 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_17210 PF14602 Hexapeptide repeat of succinyl-transferase KQ255_17220 PF06508 Queuosine biosynthesis protein QueC KQ255_17235 PF00578 AhpC/TSA family KQ255_17245 PF01467 Cytidylyltransferase-like KQ255_17245 PF00293 NUDIX domain KQ255_17250 PF00378 Enoyl-CoA hydratase/isomerase KQ255_17255 PF01784 NIF3 (NGG1p interacting factor 3) KQ255_17260 PF07690 Major Facilitator Superfamily KQ255_17265 PF02769 AIR synthase related protein, C-terminal domain KQ255_17265 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KQ255_17265 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KQ255_17270 PF01966 HD domain KQ255_17275 PF07499 RuvA, C-terminal domain KQ255_17275 PF01330 RuvA N terminal domain KQ255_17280 PF17864 RuvB AAA lid domain KQ255_17280 PF05491 RuvB C-terminal winged helix domain KQ255_17280 PF05496 Holliday junction DNA helicase RuvB P-loop domain KQ255_17285 PF01546 Peptidase family M20/M25/M40 KQ255_17285 PF07687 Peptidase dimerisation domain KQ255_17290 PF03061 Thioesterase superfamily KQ255_17295 PF01618 MotA/TolQ/ExbB proton channel family KQ255_17300 PF02472 Biopolymer transport protein ExbD/TolR KQ255_17310 PF07676 WD40-like Beta Propeller Repeat KQ255_17310 PF04052 TolB amino-terminal domain KQ255_17315 PF00691 OmpA family KQ255_17325 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KQ255_17330 PF00588 SpoU rRNA Methylase family KQ255_17330 PF08032 RNA 2'-O ribose methyltransferase substrate binding KQ255_17360 PF00308 Bacterial dnaA protein KQ255_17360 PF08299 Bacterial dnaA protein helix-turn-helix KQ255_17360 PF11638 DnaA N-terminal domain KQ255_17365 PF01594 AI-2E family transporter KQ255_17370 PF02769 AIR synthase related protein, C-terminal domain KQ255_17370 PF00586 AIR synthase related protein, N-terminal domain KQ255_17375 PF00551 Formyl transferase KQ255_17380 PF12697 Alpha/beta hydrolase family KQ255_17385 PF06965 Na+/H+ antiporter 1 KQ255_17385 PF01343 Peptidase family S49 KQ255_17395 PF03772 Competence protein KQ255_17395 PF13567 Domain of unknown function (DUF4131) KQ255_17395 PF00753 Metallo-beta-lactamase superfamily KQ255_17400 PF00005 ABC transporter KQ255_17405 PF02687 FtsX-like permease family KQ255_17405 PF12704 MacB-like periplasmic core domain KQ255_17420 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KQ255_17435 PF00266 Aminotransferase class-V KQ255_17445 PF13533 Biotin-lipoyl like KQ255_17465 PF00535 Glycosyl transferase family 2 KQ255_17480 PF00521 DNA gyrase/topoisomerase IV, subunit A KQ255_17480 PF03989 DNA gyrase C-terminal domain, beta-propeller KQ255_17485 PF00766 Electron transfer flavoprotein FAD-binding domain KQ255_17485 PF01012 Electron transfer flavoprotein domain KQ255_17490 PF01012 Electron transfer flavoprotein domain KQ255_17495 PF00589 Phage integrase family KQ255_17495 PF02899 Phage integrase, N-terminal SAM-like domain KQ255_17500 PF01810 LysE type translocator KQ255_17505 PF00561 alpha/beta hydrolase fold KQ255_17510 PF01678 Diaminopimelate epimerase KQ255_17515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KQ255_17515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KQ255_17525 PF00324 Amino acid permease KQ255_17530 PF18073 Rubredoxin metal binding domain KQ255_17540 PF00152 tRNA synthetases class II (D, K and N) KQ255_17545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ255_17545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ255_17545 PF11890 Domain of unknown function (DUF3410) KQ255_17550 PF06803 Protein of unknown function (DUF1232) KQ255_17555 PF02634 FdhD/NarQ family KQ255_17560 PF00384 Molybdopterin oxidoreductase KQ255_17565 PF02595 Glycerate kinase family KQ255_17580 PF00881 Nitroreductase family KQ255_17595 PF00665 Integrase core domain KQ255_17595 PF13936 Helix-turn-helix domain KQ255_17615 PF00975 Thioesterase domain KQ255_17615 PF00501 AMP-binding enzyme KQ255_17615 PF00550 Phosphopantetheine attachment site KQ255_17615 PF00668 Condensation domain KQ255_17615 PF13193 AMP-binding enzyme C-terminal domain KQ255_17630 PF03449 Transcription elongation factor, N-terminal KQ255_17630 PF01272 Transcription elongation factor, GreA/GreB, C-term KQ255_17635 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ255_17635 PF01464 Transglycosylase SLT domain KQ255_17645 PF01171 PP-loop family KQ255_17650 PF01464 Transglycosylase SLT domain KQ255_17655 PF01435 Peptidase family M48 KQ255_17665 PF00873 AcrB/AcrD/AcrF family KQ255_17670 PF03009 Glycerophosphoryl diester phosphodiesterase family KQ255_17675 PF00753 Metallo-beta-lactamase superfamily KQ255_17680 PF01219 Prokaryotic diacylglycerol kinase KQ255_17685 PF00118 TCP-1/cpn60 chaperonin family KQ255_17690 PF00166 Chaperonin 10 Kd subunit KQ255_17700 PF13936 Helix-turn-helix domain KQ255_17700 PF00665 Integrase core domain KQ255_17705 PF00149 Calcineurin-like phosphoesterase KQ255_17710 PF00781 Diacylglycerol kinase catalytic domain KQ255_17715 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KQ255_17715 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KQ255_17720 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KQ255_17720 PF01266 FAD dependent oxidoreductase KQ255_17725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KQ255_17725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KQ255_17730 PF00083 Sugar (and other) transporter KQ255_17745 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KQ255_17745 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KQ255_17760 PF09423 PhoD-like phosphatase KQ255_17760 PF16655 PhoD-like phosphatase, N-terminal domain KQ255_17780 PF00809 Pterin binding enzyme KQ255_17785 PF00004 ATPase family associated with various cellular activities (AAA) KQ255_17785 PF17862 AAA+ lid domain KQ255_17785 PF06480 FtsH Extracellular KQ255_17785 PF01434 Peptidase family M41 KQ255_17790 PF01728 FtsJ-like methyltransferase KQ255_17795 PF01985 CRS1 / YhbY (CRM) domain KQ255_17810 PF00117 Glutamine amidotransferase class-I KQ255_17810 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KQ255_17815 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KQ255_17815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ255_17815 PF02142 MGS-like domain KQ255_17820 PF01272 Transcription elongation factor, GreA/GreB, C-term KQ255_17820 PF03449 Transcription elongation factor, N-terminal KQ255_17825 PF00132 Bacterial transferase hexapeptide (six repeats) KQ255_17830 PF00582 Universal stress protein family KQ255_17835 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ255_17845 PF09587 Bacterial capsule synthesis protein PGA_cap KQ255_17860 PF00999 Sodium/hydrogen exchanger family KQ255_17865 PF04228 Putative neutral zinc metallopeptidase KQ255_17870 PF05661 Protein of unknown function (DUF808) KQ255_17875 PF00579 tRNA synthetases class I (W and Y) KQ255_17890 PF02629 CoA binding domain KQ255_17890 PF00549 CoA-ligase KQ255_17895 PF08442 ATP-grasp domain KQ255_17895 PF00549 CoA-ligase KQ255_17900 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_17900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ255_17905 PF00364 Biotin-requiring enzyme KQ255_17905 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ255_17905 PF02817 e3 binding domain KQ255_17910 PF16078 2-oxoglutarate dehydrogenase N-terminus KQ255_17910 PF00676 Dehydrogenase E1 component KQ255_17910 PF16870 2-oxoglutarate dehydrogenase C-terminal KQ255_17910 PF02779 Transketolase, pyrimidine binding domain KQ255_17925 PF13085 2Fe-2S iron-sulfur cluster binding domain KQ255_17930 PF00890 FAD binding domain KQ255_17930 PF02910 Fumarate reductase flavoprotein C-term KQ255_17935 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KQ255_17940 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KQ255_17945 PF00285 Citrate synthase, C-terminal domain KQ255_17955 PF17773 UPF0176 acylphosphatase like domain KQ255_17955 PF00581 Rhodanese-like domain KQ255_17970 PF04545 Sigma-70, region 4 KQ255_17970 PF04542 Sigma-70 region 2 KQ255_17970 PF00140 Sigma-70 factor, region 1.2 KQ255_17970 PF04539 Sigma-70 region 3 KQ255_17970 PF04546 Sigma-70, non-essential region KQ255_17970 PF03979 Sigma-70 factor, region 1.1 KQ255_17975 PF04359 Protein of unknown function (DUF493) KQ255_17980 PF03099 Biotin/lipoate A/B protein ligase family KQ255_17990 PF00465 Iron-containing alcohol dehydrogenase KQ255_17995 PF13520 Amino acid permease KQ255_18000 PF03358 NADPH-dependent FMN reductase KQ255_18005 PF01638 HxlR-like helix-turn-helix KQ255_18010 PF00588 SpoU rRNA Methylase family KQ255_18015 PF10414 Sirohaem synthase dimerisation region KQ255_18015 PF14824 Sirohaem biosynthesis protein central KQ255_18015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KQ255_18020 PF02403 Seryl-tRNA synthetase N-terminal domain KQ255_18020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ255_18030 PF03548 Outer membrane lipoprotein carrier protein LolA KQ255_18035 PF01016 Ribosomal L27 protein KQ255_18040 PF00829 Ribosomal prokaryotic L21 protein KQ255_18050 PF00348 Polyprenyl synthetase KQ255_18060 PF01569 PAP2 superfamily KQ255_18065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ255_18065 PF00529 HlyD membrane-fusion protein of T1SS KQ255_18070 PF00873 AcrB/AcrD/AcrF family KQ255_18075 PF02321 Outer membrane efflux protein KQ255_18080 PF01906 Putative heavy-metal-binding KQ255_18085 PF01906 Putative heavy-metal-binding KQ255_18105 PF08264 Anticodon-binding domain of tRNA KQ255_18105 PF00133 tRNA synthetases class I (I, L, M and V) KQ255_18105 PF10458 Valyl tRNA synthetase tRNA binding arm KQ255_18125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_18125 PF03466 LysR substrate binding domain KQ255_18130 PF00909 Ammonium Transporter Family KQ255_18140 PF08521 Two-component sensor kinase N-terminal KQ255_18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_18140 PF00512 His Kinase A (phospho-acceptor) domain KQ255_18145 PF00072 Response regulator receiver domain KQ255_18145 PF00486 Transcriptional regulatory protein, C terminal KQ255_18150 PF08019 Phosphoethanolamine transferase EptA/EptB KQ255_18150 PF00884 Sulfatase KQ255_18170 PF01734 Patatin-like phospholipase KQ255_18180 PF01145 SPFH domain / Band 7 family KQ255_18185 PF04237 YjbR KQ255_18190 PF00348 Polyprenyl synthetase KQ255_18195 PF04303 PrpF protein KQ255_18200 PF00324 Amino acid permease KQ255_18265 PF01476 LysM domain KQ255_18265 PF08525 Opacity-associated protein A N-terminal motif KQ255_18265 PF01551 Peptidase family M23 KQ255_18465 PF03796 DnaB-like helicase C terminal domain KQ255_18465 PF00772 DnaB-like helicase N terminal domain KQ255_18490 PF01381 Helix-turn-helix KQ255_18545 PF01965 DJ-1/PfpI family KQ255_18550 PF09277 Erythronolide synthase, docking KQ255_18550 PF00698 Acyl transferase domain KQ255_18550 PF08240 Alcohol dehydrogenase GroES-like domain KQ255_18550 PF08990 Erythronolide synthase docking KQ255_18550 PF16197 Ketoacyl-synthetase C-terminal extension KQ255_18550 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ255_18550 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ255_18550 PF08659 KR domain KQ255_18550 PF00550 Phosphopantetheine attachment site KQ255_18550 PF14765 Polyketide synthase dehydratase KQ255_18555 PF12833 Helix-turn-helix domain KQ255_18555 PF06719 AraC-type transcriptional regulator N-terminus KQ255_18560 PF02673 Bacitracin resistance protein BacA KQ255_18565 PF13936 Helix-turn-helix domain KQ255_18565 PF00665 Integrase core domain KQ255_18585 PF02525 Flavodoxin-like fold KQ255_18600 PF01507 Phosphoadenosine phosphosulfate reductase family KQ255_18605 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KQ255_18605 PF06974 Protein of unknown function (DUF1298) KQ255_18615 PF10150 Ribonuclease E/G family KQ255_18615 PF00575 S1 RNA binding domain KQ255_18620 PF02545 Maf-like protein KQ255_18625 PF04093 rod shape-determining protein MreD KQ255_18630 PF04085 rod shape-determining protein MreC KQ255_18640 PF02686 Glu-tRNAGln amidotransferase C subunit KQ255_18645 PF01425 Amidase KQ255_18650 PF02934 GatB/GatE catalytic domain KQ255_18650 PF02637 GatB domain KQ255_18675 PF05992 SbmA/BacA-like family KQ255_18680 PF13291 ACT domain KQ255_18680 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_18685 PF01734 Patatin-like phospholipase KQ255_18690 PF01235 Sodium:alanine symporter family KQ255_18705 PF00881 Nitroreductase family KQ255_18710 PF07690 Major Facilitator Superfamily KQ255_18715 PF12805 FUSC-like inner membrane protein yccS KQ255_18725 PF00667 FAD binding domain KQ255_18725 PF00175 Oxidoreductase NAD-binding domain KQ255_18725 PF00258 Flavodoxin KQ255_18765 PF17969 L,D-transpeptidase C-terminal domain KQ255_18765 PF03734 L,D-transpeptidase catalytic domain KQ255_18770 PF04304 Protein of unknown function (DUF454) KQ255_18780 PF08085 Entericidin EcnA/B family KQ255_18785 PF07687 Peptidase dimerisation domain KQ255_18785 PF01546 Peptidase family M20/M25/M40 KQ255_18795 PF06969 HemN C-terminal domain KQ255_18795 PF04055 Radical SAM superfamily KQ255_18805 PF00072 Response regulator receiver domain KQ255_18805 PF01627 Hpt domain KQ255_18805 PF01584 CheW-like domain KQ255_18805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_18810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KQ255_18810 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KQ255_18815 PF01584 CheW-like domain KQ255_18820 PF00072 Response regulator receiver domain KQ255_18825 PF00072 Response regulator receiver domain KQ255_18840 PF00873 AcrB/AcrD/AcrF family KQ255_18845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ255_18845 PF03129 Anticodon binding domain KQ255_18845 PF04073 Aminoacyl-tRNA editing domain KQ255_18850 PF07411 Domain of unknown function (DUF1508) KQ255_18855 PF03831 PhnA domain KQ255_18855 PF08274 PhnA Zinc-Ribbon KQ255_18860 PF04343 Protein of unknown function, DUF488 KQ255_18870 PF01571 Aminomethyltransferase folate-binding domain KQ255_18875 PF10411 Disulfide bond isomerase protein N-terminus KQ255_18875 PF13098 Thioredoxin-like domain KQ255_18885 PF03547 Membrane transport protein KQ255_18890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ255_18895 PF00593 TonB dependent receptor KQ255_18895 PF07715 TonB-dependent Receptor Plug Domain KQ255_18900 PF02245 Methylpurine-DNA glycosylase (MPG) KQ255_18905 PF06827 Zinc finger found in FPG and IleRS KQ255_18905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KQ255_18905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KQ255_18920 PF01741 Large-conductance mechanosensitive channel, MscL KQ255_18925 PF03144 Elongation factor Tu domain 2 KQ255_18925 PF00009 Elongation factor Tu GTP binding domain KQ255_18925 PF00679 Elongation factor G C-terminus KQ255_18930 PF00860 Permease family KQ255_18935 PF08468 Methyltransferase small domain N-terminal KQ255_18935 PF05175 Methyltransferase small domain KQ255_18940 PF00324 Amino acid permease KQ255_18945 PF01139 tRNA-splicing ligase RtcB KQ255_18955 PF13505 Outer membrane protein beta-barrel domain KQ255_18955 PF00691 OmpA family KQ255_18965 PF00108 Thiolase, N-terminal domain KQ255_18965 PF02803 Thiolase, C-terminal domain KQ255_18975 PF00893 Small Multidrug Resistance protein KQ255_18985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ255_18985 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ255_18990 PF01011 PQQ enzyme repeat KQ255_18995 PF04966 Carbohydrate-selective porin, OprB family KQ255_19000 PF02515 CoA-transferase family III KQ255_19005 PF12833 Helix-turn-helix domain KQ255_19005 PF02311 AraC-like ligand binding domain KQ255_19010 PF00108 Thiolase, N-terminal domain KQ255_19010 PF02803 Thiolase, C-terminal domain KQ255_19015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ255_19015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ255_19015 PF00378 Enoyl-CoA hydratase/isomerase KQ255_19030 PF13673 Acetyltransferase (GNAT) domain KQ255_19040 PF03006 Haemolysin-III related KQ255_19045 PF00083 Sugar (and other) transporter KQ255_19045 PF07690 Major Facilitator Superfamily KQ255_19055 PF07516 SecA Wing and Scaffold domain KQ255_19055 PF01043 SecA preprotein cross-linking domain KQ255_19055 PF07517 SecA DEAD-like domain KQ255_19055 PF02810 SEC-C motif KQ255_19060 PF00578 AhpC/TSA family KQ255_19060 PF10417 C-terminal domain of 1-Cys peroxiredoxin KQ255_19065 PF00753 Metallo-beta-lactamase superfamily KQ255_19080 PF02875 Mur ligase family, glutamate ligase domain KQ255_19080 PF08245 Mur ligase middle domain KQ255_19085 PF01039 Carboxyl transferase domain KQ255_19090 PF00290 Tryptophan synthase alpha chain KQ255_19115 PF00291 Pyridoxal-phosphate dependent enzyme KQ255_19120 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KQ255_19125 PF07715 TonB-dependent Receptor Plug Domain KQ255_19125 PF00593 TonB dependent receptor KQ255_19130 PF01923 Cobalamin adenosyltransferase KQ255_19150 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KQ255_19155 PF00072 Response regulator receiver domain KQ255_19155 PF00486 Transcriptional regulatory protein, C terminal KQ255_19160 PF00672 HAMP domain KQ255_19160 PF00512 His Kinase A (phospho-acceptor) domain KQ255_19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_19170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_19170 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_19170 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ255_19170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_19175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_19175 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_19175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_19175 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ255_19180 PF06146 Phosphate-starvation-inducible E KQ255_19200 PF07715 TonB-dependent Receptor Plug Domain KQ255_19200 PF00593 TonB dependent receptor KQ255_19210 PF02938 GAD domain KQ255_19210 PF00152 tRNA synthetases class II (D, K and N) KQ255_19210 PF01336 OB-fold nucleic acid binding domain KQ255_19220 PF13936 Helix-turn-helix domain KQ255_19220 PF00665 Integrase core domain KQ255_19250 PF00534 Glycosyl transferases group 1 KQ255_19250 PF13439 Glycosyltransferase Family 4 KQ255_19255 PF00535 Glycosyl transferase family 2 KQ255_19260 PF01522 Polysaccharide deacetylase KQ255_19275 PF01063 Amino-transferase class IV KQ255_19280 PF08335 GlnD PII-uridylyltransferase KQ255_19280 PF03710 Glutamate-ammonia ligase adenylyltransferase KQ255_19285 PF07689 KaiB domain KQ255_19285 PF00512 His Kinase A (phospho-acceptor) domain KQ255_19285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ255_19295 PF02547 Queuosine biosynthesis protein KQ255_19310 PF01702 Queuine tRNA-ribosyltransferase KQ255_19315 PF02699 Preprotein translocase subunit KQ255_19320 PF07549 SecD/SecF GG Motif KQ255_19320 PF02355 Protein export membrane protein KQ255_19320 PF13721 SecD export protein N-terminal TM region KQ255_19325 PF02355 Protein export membrane protein KQ255_19325 PF07549 SecD/SecF GG Motif KQ255_19330 PF04127 DNA / pantothenate metabolism flavoprotein KQ255_19330 PF02441 Flavoprotein KQ255_19335 PF04002 RadC-like JAB domain KQ255_19340 PF01062 Bestrophin, RFP-TM, chloride channel KQ255_19345 PF02811 PHP domain KQ255_19350 PF04279 Intracellular septation protein A KQ255_19355 PF03795 YCII-related domain KQ255_19365 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KQ255_19365 PF01266 FAD dependent oxidoreductase KQ255_19375 PF04461 Protein of unknown function (DUF520) KQ255_19385 PF03061 Thioesterase superfamily KQ255_19390 PF00085 Thioredoxin KQ255_19395 PF00561 alpha/beta hydrolase fold KQ255_19400 PF00753 Metallo-beta-lactamase superfamily KQ255_19400 PF04273 Putative phosphatase (DUF442) KQ255_19410 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ255_19410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ255_19445 PF17152 Periplasmic sensor domain KQ255_19445 PF00990 Diguanylate cyclase, GGDEF domain KQ255_19450 PF00691 OmpA family KQ255_19450 PF01389 OmpA-like transmembrane domain KQ255_19455 PF00149 Calcineurin-like phosphoesterase KQ255_19455 PF10518 TAT (twin-arginine translocation) pathway signal sequence KQ255_19460 PF13091 PLD-like domain KQ255_19470 PF16360 GTP-binding GTPase Middle Region KQ255_19470 PF01926 50S ribosome-binding GTPase KQ255_19470 PF13167 GTP-binding GTPase N-terminal KQ255_19490 PF00149 Calcineurin-like phosphoesterase KQ255_19495 PF00398 Ribosomal RNA adenine dimethylase KQ255_19500 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KQ255_19505 PF00572 Ribosomal protein L13 KQ255_19510 PF00380 Ribosomal protein S9/S16 KQ255_19515 PF13417 Glutathione S-transferase, N-terminal domain KQ255_19515 PF00043 Glutathione S-transferase, C-terminal domain KQ255_19520 PF04386 Stringent starvation protein B KQ255_19530 PF00289 Biotin carboxylase, N-terminal domain KQ255_19530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ255_19530 PF00364 Biotin-requiring enzyme KQ255_19530 PF02785 Biotin carboxylase C-terminal domain KQ255_19540 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_19540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_19540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_19545 PF01039 Carboxyl transferase domain KQ255_19560 PF00440 Bacterial regulatory proteins, tetR family KQ255_19560 PF17932 Tetracyclin repressor-like, C-terminal domain KQ255_19565 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_19565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_19565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_19610 PF01066 CDP-alcohol phosphatidyltransferase KQ255_19615 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KQ255_19635 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KQ255_19635 PF00056 lactate/malate dehydrogenase, NAD binding domain KQ255_19645 PF01464 Transglycosylase SLT domain KQ255_19645 PF10145 Phage-related minor tail protein KQ255_19645 PF01551 Peptidase family M23 KQ255_19650 PF00919 Uncharacterized protein family UPF0004 KQ255_19650 PF04055 Radical SAM superfamily KQ255_19650 PF01938 TRAM domain KQ255_19655 PF02562 PhoH-like protein KQ255_19660 PF02130 Uncharacterized protein family UPF0054 KQ255_19685 PF03358 NADPH-dependent FMN reductase KQ255_19690 PF03631 Virulence factor BrkB KQ255_19695 PF00892 EamA-like transporter family KQ255_19700 PF12833 Helix-turn-helix domain KQ255_19705 PF01557 Fumarylacetoacetate (FAA) hydrolase family KQ255_19735 PF13936 Helix-turn-helix domain KQ255_19735 PF00665 Integrase core domain KQ255_19760 PF08461 Ribonuclease R winged-helix domain KQ255_19760 PF17876 Cold shock domain KQ255_19760 PF00773 RNB domain KQ255_19760 PF00575 S1 RNA binding domain KQ255_19760 PF08206 Ribonuclease B OB domain KQ255_19765 PF01432 Peptidase family M3 KQ255_19800 PF03937 Flavinator of succinate dehydrogenase KQ255_19805 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_19805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_19805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_19810 PF00743 Flavin-binding monooxygenase-like KQ255_19815 PF01196 Ribosomal protein L17 KQ255_19820 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KQ255_19820 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KQ255_19820 PF01000 RNA polymerase Rpb3/RpoA insert domain KQ255_19825 PF00163 Ribosomal protein S4/S9 N-terminal domain KQ255_19825 PF01479 S4 domain KQ255_19830 PF00411 Ribosomal protein S11 KQ255_19835 PF00416 Ribosomal protein S13/S18 KQ255_19840 PF00444 Ribosomal protein L36 KQ255_19845 PF00344 SecY translocase KQ255_19850 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KQ255_19855 PF00327 Ribosomal protein L30p/L7e KQ255_19860 PF03719 Ribosomal protein S5, C-terminal domain KQ255_19860 PF00333 Ribosomal protein S5, N-terminal domain KQ255_19865 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KQ255_19870 PF00347 Ribosomal protein L6 KQ255_19875 PF00410 Ribosomal protein S8 KQ255_19880 PF00253 Ribosomal protein S14p/S29e KQ255_19885 PF00673 ribosomal L5P family C-terminus KQ255_19885 PF00281 Ribosomal protein L5 KQ255_19890 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KQ255_19890 PF00467 KOW motif KQ255_19895 PF00238 Ribosomal protein L14p/L23e KQ255_19900 PF00366 Ribosomal protein S17 KQ255_19905 PF00831 Ribosomal L29 protein KQ255_19910 PF00252 Ribosomal protein L16p/L10e KQ255_19915 PF00189 Ribosomal protein S3, C-terminal domain KQ255_19915 PF07650 KH domain KQ255_19920 PF00237 Ribosomal protein L22p/L17e KQ255_19925 PF00203 Ribosomal protein S19 KQ255_19930 PF03947 Ribosomal Proteins L2, C-terminal domain KQ255_19930 PF00181 Ribosomal Proteins L2, RNA binding domain KQ255_19935 PF00276 Ribosomal protein L23 KQ255_19940 PF00573 Ribosomal protein L4/L1 family KQ255_19945 PF00297 Ribosomal protein L3 KQ255_19950 PF00338 Ribosomal protein S10p/S20e KQ255_19955 PF00117 Glutamine amidotransferase class-I KQ255_19960 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ255_19965 PF05872 Bacterial protein of unknown function (DUF853) KQ255_19970 PF00970 Oxidoreductase FAD-binding domain KQ255_19970 PF00042 Globin KQ255_19970 PF00175 Oxidoreductase NAD-binding domain KQ255_19975 PF02082 Transcriptional regulator KQ255_19980 PF01926 50S ribosome-binding GTPase KQ255_19990 PF00375 Sodium:dicarboxylate symporter family KQ255_20000 PF01553 Acyltransferase KQ255_20015 PF17191 RecG wedge domain KQ255_20015 PF00271 Helicase conserved C-terminal domain KQ255_20015 PF00270 DEAD/DEAH box helicase KQ255_20020 PF00156 Phosphoribosyl transferase domain KQ255_20025 PF00293 NUDIX domain KQ255_20030 PF03641 Possible lysine decarboxylase KQ255_20035 PF01544 CorA-like Mg2+ transporter protein KQ255_20045 PF05494 MlaC protein KQ255_20055 PF02405 Permease MlaE KQ255_20060 PF00005 ABC transporter KQ255_20070 PF00270 DEAD/DEAH box helicase KQ255_20070 PF00271 Helicase conserved C-terminal domain KQ255_20070 PF03880 DbpA RNA binding domain KQ255_20070 PF12343 Cold shock protein DEAD box A KQ255_20075 PF00459 Inositol monophosphatase family KQ255_20080 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KQ255_20080 PF02779 Transketolase, pyrimidine binding domain KQ255_20080 PF02780 Transketolase, C-terminal domain KQ255_20085 PF00925 GTP cyclohydrolase II KQ255_20090 PF01218 Coproporphyrinogen III oxidase KQ255_20095 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KQ255_20095 PF01488 Shikimate / quinate 5-dehydrogenase KQ255_20095 PF08501 Shikimate dehydrogenase substrate binding domain KQ255_20105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ255_20105 PF02770 Acyl-CoA dehydrogenase, middle domain KQ255_20105 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ255_20105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ255_20115 PF04024 PspC domain KQ255_20120 PF00571 CBS domain KQ255_20135 PF07690 Major Facilitator Superfamily KQ255_20140 PF02091 Glycyl-tRNA synthetase alpha subunit KQ255_20145 PF05746 DALR anticodon binding domain KQ255_20145 PF02092 Glycyl-tRNA synthetase beta subunit KQ255_20165 PF00892 EamA-like transporter family KQ255_20170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ255_20170 PF03466 LysR substrate binding domain KQ255_20185 PF00082 Subtilase family KQ255_20185 PF05922 Peptidase inhibitor I9 KQ255_20200 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KQ255_20205 PF04996 Succinylarginine dihydrolase KQ255_20210 PF00171 Aldehyde dehydrogenase family KQ255_20215 PF04958 Arginine N-succinyltransferase beta subunit KQ255_20220 PF00202 Aminotransferase class-III KQ255_20225 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KQ255_20225 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KQ255_20235 PF00905 Penicillin binding protein transpeptidase domain KQ255_20250 PF01051 Initiator Replication protein KQ255_20265 PF13610 DDE domain KQ255_20280 PF02522 Aminoglycoside 3-N-acetyltransferase KQ255_20285 PF13610 DDE domain KQ255_20315 PF00313 'Cold-shock' DNA-binding domain