locus-tag class description KQ253_00170 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KQ253_00210 PF00712 DNA polymerase III beta subunit, N-terminal domain KQ253_00210 PF02767 DNA polymerase III beta subunit, central domain KQ253_00210 PF02768 DNA polymerase III beta subunit, C-terminal domain KQ253_00295 PF11799 impB/mucB/samB family C-terminal domain KQ253_00295 PF13438 Domain of unknown function (DUF4113) KQ253_00295 PF00817 impB/mucB/samB family KQ253_00300 PF00717 Peptidase S24-like KQ253_00315 PF13356 Arm DNA-binding domain KQ253_00315 PF00589 Phage integrase family KQ253_00365 PF13936 Helix-turn-helix domain KQ253_00365 PF00665 Integrase core domain KQ253_00375 PF00436 Single-strand binding protein family KQ253_00390 PF13936 Helix-turn-helix domain KQ253_00390 PF00665 Integrase core domain KQ253_00415 PF18766 SWI2/SNF2 ATPase KQ253_00415 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KQ253_00415 PF11867 Domain of unknown function (DUF3387) KQ253_00420 PF01420 Type I restriction modification DNA specificity domain KQ253_00425 PF02384 N-6 DNA Methylase KQ253_00425 PF12161 HsdM N-terminal domain KQ253_00445 PF00083 Sugar (and other) transporter KQ253_00450 PF00701 Dihydrodipicolinate synthetase family KQ253_00460 PF04542 Sigma-70 region 2 KQ253_00460 PF08281 Sigma-70, region 4 KQ253_00470 PF07715 TonB-dependent Receptor Plug Domain KQ253_00470 PF00593 TonB dependent receptor KQ253_00480 PF04575 Protein of unknown function (DUF560) KQ253_00490 PF01126 Heme oxygenase KQ253_00515 PF13520 Amino acid permease KQ253_00530 PF06039 Malate:quinone oxidoreductase (Mqo) KQ253_00535 PF00732 GMC oxidoreductase KQ253_00535 PF05199 GMC oxidoreductase KQ253_00540 PF00171 Aldehyde dehydrogenase family KQ253_00545 PF00440 Bacterial regulatory proteins, tetR family KQ253_00545 PF13977 BetI-type transcriptional repressor, C-terminal KQ253_00555 PF13737 Transposase DDE domain KQ253_00565 PF02028 BCCT, betaine/carnitine/choline family transporter KQ253_00575 PF03061 Thioesterase superfamily KQ253_00585 PF07683 Cobalamin synthesis protein cobW C-terminal domain KQ253_00585 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ253_00590 PF00375 Sodium:dicarboxylate symporter family KQ253_00595 PF07152 YaeQ protein KQ253_00600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ253_00605 PF01522 Polysaccharide deacetylase KQ253_00605 PF14883 Hypothetical glycosyl hydrolase family 13 KQ253_00610 PF00535 Glycosyl transferase family 2 KQ253_00620 PF00378 Enoyl-CoA hydratase/isomerase KQ253_00635 PF09339 IclR helix-turn-helix domain KQ253_00635 PF01614 Bacterial transcriptional regulator KQ253_00640 PF00355 Rieske [2Fe-2S] domain KQ253_00650 PF00355 Rieske [2Fe-2S] domain KQ253_00660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ253_00665 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_00665 PF14759 Reductase C-terminal KQ253_00670 PF07690 Major Facilitator Superfamily KQ253_00680 PF12697 Alpha/beta hydrolase family KQ253_00690 PF01958 Domain of unknown function DUF108 KQ253_00690 PF03447 Homoserine dehydrogenase, NAD binding domain KQ253_00695 PF00171 Aldehyde dehydrogenase family KQ253_00700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ253_00700 PF00205 Thiamine pyrophosphate enzyme, central domain KQ253_00700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ253_00710 PF07690 Major Facilitator Superfamily KQ253_00715 PF01327 Polypeptide deformylase KQ253_00720 PF04960 Glutaminase KQ253_00725 PF02311 AraC-like ligand binding domain KQ253_00725 PF12833 Helix-turn-helix domain KQ253_00730 PF07690 Major Facilitator Superfamily KQ253_00735 PF01263 Aldose 1-epimerase KQ253_00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_00745 PF03466 LysR substrate binding domain KQ253_00755 PF07690 Major Facilitator Superfamily KQ253_00760 PF00456 Transketolase, thiamine diphosphate binding domain KQ253_00765 PF02779 Transketolase, pyrimidine binding domain KQ253_00765 PF02780 Transketolase, C-terminal domain KQ253_00770 PF02310 B12 binding domain KQ253_00770 PF02607 B12 binding domain KQ253_00770 PF02965 Vitamin B12 dependent methionine synthase, activation domain KQ253_00770 PF00809 Pterin binding enzyme KQ253_00770 PF02574 Homocysteine S-methyltransferase KQ253_00775 PF01384 Phosphate transporter family KQ253_00780 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_00795 PF03781 Sulfatase-modifying factor enzyme 1 KQ253_00800 PF00884 Sulfatase KQ253_00810 PF01106 NifU-like domain KQ253_00810 PF01521 Iron-sulphur cluster biosynthesis KQ253_00815 PF00593 TonB dependent receptor KQ253_00815 PF07715 TonB-dependent Receptor Plug Domain KQ253_00840 PF00484 Carbonic anhydrase KQ253_00845 PF13472 GDSL-like Lipase/Acylhydrolase family KQ253_00850 PF00005 ABC transporter KQ253_00860 PF01694 Rhomboid family KQ253_00865 PF00912 Transglycosylase KQ253_00870 PF13089 Polyphosphate kinase N-terminal domain KQ253_00870 PF17941 Polyphosphate kinase C-terminal domain 1 KQ253_00870 PF13090 Polyphosphate kinase C-terminal domain 2 KQ253_00870 PF02503 Polyphosphate kinase middle domain KQ253_00885 PF03466 LysR substrate binding domain KQ253_00885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_00890 PF00561 alpha/beta hydrolase fold KQ253_00895 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_00895 PF18113 Rubredoxin binding C-terminal domain KQ253_00900 PF00301 Rubredoxin KQ253_00915 PF00152 tRNA synthetases class II (D, K and N) KQ253_00915 PF01336 OB-fold nucleic acid binding domain KQ253_00920 PF14052 Capsule assembly protein Wzi KQ253_00930 PF01507 Phosphoadenosine phosphosulfate reductase family KQ253_00935 PF00009 Elongation factor Tu GTP binding domain KQ253_00950 PF03600 Citrate transporter KQ253_00955 PF03471 Transporter associated domain KQ253_00955 PF00571 CBS domain KQ253_00955 PF01595 Cyclin M transmembrane N-terminal domain KQ253_00960 PF03466 LysR substrate binding domain KQ253_00960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_00965 PF00463 Isocitrate lyase family KQ253_00980 PF01774 UreD urease accessory protein KQ253_00985 PF00547 Urease, gamma subunit KQ253_00990 PF00699 Urease beta subunit KQ253_01000 PF01979 Amidohydrolase family KQ253_01000 PF00449 Urease alpha-subunit, N-terminal domain KQ253_01005 PF05194 UreE urease accessory protein, C-terminal domain KQ253_01005 PF02814 UreE urease accessory protein, N-terminal domain KQ253_01010 PF01730 UreF KQ253_01015 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ253_01030 PF00905 Penicillin binding protein transpeptidase domain KQ253_01030 PF03717 Penicillin-binding Protein dimerisation domain KQ253_01045 PF05191 Adenylate kinase, active site lid KQ253_01055 PF10576 Iron-sulfur binding domain of endonuclease III KQ253_01055 PF00633 Helix-hairpin-helix motif KQ253_01055 PF00730 HhH-GPD superfamily base excision DNA repair protein KQ253_01060 PF04060 Putative Fe-S cluster KQ253_01065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KQ253_01065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KQ253_01075 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KQ253_01080 PF02590 Predicted SPOUT methyltransferase KQ253_01085 PF05362 Lon protease (S16) C-terminal proteolytic domain KQ253_01085 PF02190 ATP-dependent protease La (LON) substrate-binding domain KQ253_01085 PF00004 ATPase family associated with various cellular activities (AAA) KQ253_01090 PF05658 Head domain of trimeric autotransporter adhesin KQ253_01090 PF03895 YadA-like membrane anchor domain KQ253_01090 PF05662 Coiled stalk of trimeric autotransporter adhesin KQ253_01090 PF13018 Extended Signal Peptide of Type V secretion system KQ253_01095 PF04355 SmpA / OmlA family KQ253_01095 PF00691 OmpA family KQ253_01100 PF01812 5-formyltetrahydrofolate cyclo-ligase family KQ253_01155 PF01726 LexA DNA binding domain KQ253_01155 PF00717 Peptidase S24-like KQ253_01170 PF00772 DnaB-like helicase N terminal domain KQ253_01170 PF03796 DnaB-like helicase C terminal domain KQ253_01385 PF05195 Aminopeptidase P, N-terminal domain KQ253_01385 PF00557 Metallopeptidase family M24 KQ253_01390 PF01494 FAD binding domain KQ253_01395 PF01494 FAD binding domain KQ253_01405 PF13411 MerR HTH family regulatory protein KQ253_01415 PF01810 LysE type translocator KQ253_01420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_01420 PF03466 LysR substrate binding domain KQ253_01430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KQ253_01435 PF02021 Uncharacterised protein family UPF0102 KQ253_01440 PF04972 BON domain KQ253_01450 PF09297 NADH pyrophosphatase zinc ribbon domain KQ253_01450 PF00293 NUDIX domain KQ253_01460 PF00929 Exonuclease KQ253_01465 PF01476 LysM domain KQ253_01465 PF01464 Transglycosylase SLT domain KQ253_01465 PF01476 LysM domain KQ253_01465 PF01464 Transglycosylase SLT domain KQ253_01470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KQ253_01475 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_01480 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_01480 PF12911 N-terminal TM domain of oligopeptide transport permease C KQ253_01485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KQ253_01485 PF00005 ABC transporter KQ253_01490 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_01490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ253_01495 PF00593 TonB dependent receptor KQ253_01495 PF07715 TonB-dependent Receptor Plug Domain KQ253_01505 PF00929 Exonuclease KQ253_01510 PF01979 Amidohydrolase family KQ253_01515 PF01590 GAF domain KQ253_01515 PF00563 EAL domain KQ253_01515 PF00990 Diguanylate cyclase, GGDEF domain KQ253_01515 PF00360 Phytochrome region KQ253_01520 PF00764 Arginosuccinate synthase KQ253_01525 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_01525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ253_01535 PF03180 NLPA lipoprotein KQ253_01570 PF13610 DDE domain KQ253_01580 PF00884 Sulfatase KQ253_01585 PF07690 Major Facilitator Superfamily KQ253_01595 PF05199 GMC oxidoreductase KQ253_01600 PF07859 alpha/beta hydrolase fold KQ253_01605 PF00106 short chain dehydrogenase KQ253_01610 PF00743 Flavin-binding monooxygenase-like KQ253_01615 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ253_01615 PF12833 Helix-turn-helix domain KQ253_01620 PF04072 Leucine carboxyl methyltransferase KQ253_01625 PF00743 Flavin-binding monooxygenase-like KQ253_01630 PF00106 short chain dehydrogenase KQ253_01640 PF17932 Tetracyclin repressor-like, C-terminal domain KQ253_01640 PF00440 Bacterial regulatory proteins, tetR family KQ253_01645 PF17954 Quercetinase C-terminal cupin domain KQ253_01645 PF02678 Pirin KQ253_01655 PF00106 short chain dehydrogenase KQ253_01660 PF00743 Flavin-binding monooxygenase-like KQ253_01670 PF00860 Permease family KQ253_01675 PF00962 Adenosine/AMP deaminase KQ253_01680 PF01292 Prokaryotic cytochrome b561 KQ253_01690 PF01351 Ribonuclease HII KQ253_01695 PF02599 Global regulator protein family KQ253_01700 PF13840 ACT domain KQ253_01700 PF01842 ACT domain KQ253_01700 PF00696 Amino acid kinase family KQ253_01705 PF02272 DHHA1 domain KQ253_01705 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KQ253_01705 PF01411 tRNA synthetases class II (A) KQ253_01710 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KQ253_01710 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KQ253_01715 PF13393 Histidyl-tRNA synthetase KQ253_01720 PF00709 Adenylosuccinate synthetase KQ253_01735 PF00248 Aldo/keto reductase family KQ253_01740 PF00027 Cyclic nucleotide-binding domain KQ253_01740 PF13545 Crp-like helix-turn-helix domain KQ253_01750 PF02566 OsmC-like protein KQ253_01765 PF10431 C-terminal, D2-small domain, of ClpB protein KQ253_01765 PF02861 Clp amino terminal domain, pathogenicity island component KQ253_01765 PF00004 ATPase family associated with various cellular activities (AAA) KQ253_01765 PF07724 AAA domain (Cdc48 subfamily) KQ253_01765 PF17871 AAA lid domain KQ253_01780 PF02926 THUMP domain KQ253_01780 PF01170 Putative RNA methylase family UPF0020 KQ253_01780 PF10672 S-adenosylmethionine-dependent methyltransferase KQ253_01790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KQ253_01790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KQ253_01795 PF01979 Amidohydrolase family KQ253_01800 PF13488 Glycine zipper KQ253_01800 PF00691 OmpA family KQ253_01810 PF00043 Glutathione S-transferase, C-terminal domain KQ253_01810 PF13417 Glutathione S-transferase, N-terminal domain KQ253_01815 PF02390 Putative methyltransferase KQ253_01830 PF00043 Glutathione S-transferase, C-terminal domain KQ253_01830 PF02798 Glutathione S-transferase, N-terminal domain KQ253_01840 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_01840 PF13192 Thioredoxin domain KQ253_01860 PF10417 C-terminal domain of 1-Cys peroxiredoxin KQ253_01860 PF00578 AhpC/TSA family KQ253_01865 PF04408 Helicase associated domain (HA2) KQ253_01865 PF00271 Helicase conserved C-terminal domain KQ253_01865 PF11898 Domain of unknown function (DUF3418) KQ253_01865 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KQ253_01865 PF00270 DEAD/DEAH box helicase KQ253_01870 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KQ253_01870 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KQ253_01880 PF07690 Major Facilitator Superfamily KQ253_01885 PF03594 Benzoate membrane transport protein KQ253_01890 PF00106 short chain dehydrogenase KQ253_01895 PF00970 Oxidoreductase FAD-binding domain KQ253_01895 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_01895 PF00175 Oxidoreductase NAD-binding domain KQ253_01900 PF00866 Ring hydroxylating beta subunit KQ253_01905 PF00355 Rieske [2Fe-2S] domain KQ253_01905 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ253_01910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_01910 PF03466 LysR substrate binding domain KQ253_01920 PF00970 Oxidoreductase FAD-binding domain KQ253_01920 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_01920 PF00175 Oxidoreductase NAD-binding domain KQ253_01930 PF04945 YHS domain KQ253_01930 PF02332 Methane/Phenol/Toluene Hydroxylase KQ253_01935 PF02406 MmoB/DmpM family KQ253_01940 PF02332 Methane/Phenol/Toluene Hydroxylase KQ253_01945 PF06099 Phenol hydroxylase subunit KQ253_01960 PF00403 Heavy-metal-associated domain KQ253_01965 PF00376 MerR family regulatory protein KQ253_01965 PF09278 MerR, DNA binding KQ253_02000 PF02601 Exonuclease VII, large subunit KQ253_02000 PF13742 OB-fold nucleic acid binding domain KQ253_02035 PF01810 LysE type translocator KQ253_02040 PF00313 'Cold-shock' DNA-binding domain KQ253_02050 PF14748 Pyrroline-5-carboxylate reductase dimerisation KQ253_02050 PF03807 NADP oxidoreductase coenzyme F420-dependent KQ253_02075 PF07690 Major Facilitator Superfamily KQ253_02080 PF01638 HxlR-like helix-turn-helix KQ253_02110 PF09190 DALR domain KQ253_02110 PF01406 tRNA synthetases class I (C) catalytic domain KQ253_02115 PF00571 CBS domain KQ253_02115 PF01380 SIS domain KQ253_02130 PF03968 OstA-like protein KQ253_02135 PF12399 Branched-chain amino acid ATP-binding cassette transporter KQ253_02135 PF00005 ABC transporter KQ253_02140 PF02321 Outer membrane efflux protein KQ253_02145 PF00005 ABC transporter KQ253_02145 PF03412 Peptidase C39 family KQ253_02145 PF00664 ABC transporter transmembrane region KQ253_02155 PF01205 Uncharacterized protein family UPF0029 KQ253_02160 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_02170 PF01596 O-methyltransferase KQ253_02180 PF11953 Domain of unknown function (DUF3470) KQ253_02180 PF00037 4Fe-4S binding domain KQ253_02190 PF00488 MutS domain V KQ253_02190 PF05190 MutS family domain IV KQ253_02190 PF05192 MutS domain III KQ253_02190 PF05188 MutS domain II KQ253_02190 PF01624 MutS domain I KQ253_02195 PF01037 Lrp/AsnC ligand binding domain KQ253_02200 PF00892 EamA-like transporter family KQ253_02205 PF00990 Diguanylate cyclase, GGDEF domain KQ253_02205 PF00563 EAL domain KQ253_02205 PF03707 Bacterial signalling protein N terminal repeat KQ253_02210 PF03279 Bacterial lipid A biosynthesis acyltransferase KQ253_02245 PF02525 Flavodoxin-like fold KQ253_02270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ253_02270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ253_02295 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KQ253_02295 PF04717 Type VI secretion system, phage-baseplate injector KQ253_02295 PF13296 Putative type VI secretion system Rhs element Vgr KQ253_02300 PF05593 RHS Repeat KQ253_02300 PF03527 RHS protein KQ253_02330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_02330 PF03466 LysR substrate binding domain KQ253_02335 PF01566 Natural resistance-associated macrophage protein KQ253_02340 PF03746 LamB/YcsF family KQ253_02345 PF07286 Protein of unknown function (DUF1445) KQ253_02355 PF00289 Biotin carboxylase, N-terminal domain KQ253_02355 PF00364 Biotin-requiring enzyme KQ253_02355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ253_02355 PF02785 Biotin carboxylase C-terminal domain KQ253_02360 PF00654 Voltage gated chloride channel KQ253_02385 PF00107 Zinc-binding dehydrogenase KQ253_02385 PF13823 Alcohol dehydrogenase GroES-associated KQ253_02385 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_02400 PF02785 Biotin carboxylase C-terminal domain KQ253_02400 PF00289 Biotin carboxylase, N-terminal domain KQ253_02400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ253_02405 PF02525 Flavodoxin-like fold KQ253_02410 PF01638 HxlR-like helix-turn-helix KQ253_02420 PF08753 NikR C terminal nickel binding domain KQ253_02420 PF01402 Ribbon-helix-helix protein, copG family KQ253_02425 PF01425 Amidase KQ253_02430 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ253_02435 PF00005 ABC transporter KQ253_02460 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KQ253_02475 PF05947 Type VI secretion system, TssF KQ253_02490 PF06744 Type VI secretion protein IcmF C-terminal KQ253_02490 PF14331 ImcF-related N-terminal domain KQ253_02490 PF06761 Intracellular multiplication and human macrophage-killing KQ253_02500 PF01389 OmpA-like transmembrane domain KQ253_02500 PF00691 OmpA family KQ253_02510 PF00004 ATPase family associated with various cellular activities (AAA) KQ253_02510 PF10431 C-terminal, D2-small domain, of ClpB protein KQ253_02510 PF07724 AAA domain (Cdc48 subfamily) KQ253_02510 PF17871 AAA lid domain KQ253_02515 PF06812 ImpA, N-terminal, type VI secretion system KQ253_02520 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KQ253_02540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_02540 PF03466 LysR substrate binding domain KQ253_02550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KQ253_02555 PF07690 Major Facilitator Superfamily KQ253_02570 PF02677 Epoxyqueuosine reductase QueH KQ253_02580 PF00376 MerR family regulatory protein KQ253_02580 PF09278 MerR, DNA binding KQ253_02590 PF00701 Dihydrodipicolinate synthetase family KQ253_02600 PF00392 Bacterial regulatory proteins, gntR family KQ253_02605 PF05544 Proline racemase KQ253_02610 PF01266 FAD dependent oxidoreductase KQ253_02620 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_02620 PF04324 BFD-like [2Fe-2S] binding domain KQ253_02630 PF00083 Sugar (and other) transporter KQ253_02640 PF13520 Amino acid permease KQ253_02645 PF03313 Serine dehydratase alpha chain KQ253_02645 PF03315 Serine dehydratase beta chain KQ253_02650 PF00171 Aldehyde dehydrogenase family KQ253_02650 PF01575 MaoC like domain KQ253_02655 PF05138 Phenylacetic acid catabolic protein KQ253_02660 PF06243 Phenylacetic acid degradation B KQ253_02665 PF05138 Phenylacetic acid catabolic protein KQ253_02670 PF01883 Iron-sulfur cluster assembly protein KQ253_02675 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_02675 PF00175 Oxidoreductase NAD-binding domain KQ253_02675 PF00970 Oxidoreductase FAD-binding domain KQ253_02680 PF00378 Enoyl-CoA hydratase/isomerase KQ253_02685 PF00378 Enoyl-CoA hydratase/isomerase KQ253_02690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ253_02690 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KQ253_02690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ253_02695 PF02803 Thiolase, C-terminal domain KQ253_02695 PF00108 Thiolase, N-terminal domain KQ253_02700 PF00501 AMP-binding enzyme KQ253_02700 PF14535 AMP-binding enzyme C-terminal domain KQ253_02705 PF07848 PaaX-like protein KQ253_02705 PF08223 PaaX-like protein C-terminal domain KQ253_02710 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_02715 PF03061 Thioesterase superfamily KQ253_02720 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KQ253_02740 PF00199 Catalase KQ253_02745 PF01292 Prokaryotic cytochrome b561 KQ253_02765 PF12697 Alpha/beta hydrolase family KQ253_02770 PF01613 Flavin reductase like domain KQ253_02775 PF00296 Luciferase-like monooxygenase KQ253_02780 PF00171 Aldehyde dehydrogenase family KQ253_02790 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ253_02800 PF00171 Aldehyde dehydrogenase family KQ253_02805 PF02627 Carboxymuconolactone decarboxylase family KQ253_02810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_02810 PF03466 LysR substrate binding domain KQ253_02815 PF02525 Flavodoxin-like fold KQ253_02820 PF09339 IclR helix-turn-helix domain KQ253_02820 PF01614 Bacterial transcriptional regulator KQ253_02825 PF01494 FAD binding domain KQ253_02830 PF00392 Bacterial regulatory proteins, gntR family KQ253_02830 PF07702 UTRA domain KQ253_02840 PF08402 TOBE domain KQ253_02840 PF00005 ABC transporter KQ253_02845 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_02850 PF01266 FAD dependent oxidoreductase KQ253_02855 PF00266 Aminotransferase class-V KQ253_02860 PF13419 Haloacid dehalogenase-like hydrolase KQ253_02865 PF07690 Major Facilitator Superfamily KQ253_02870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_02870 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_02870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_02875 PF02515 CoA-transferase family III KQ253_02880 PF09339 IclR helix-turn-helix domain KQ253_02885 PF00378 Enoyl-CoA hydratase/isomerase KQ253_02890 PF03060 Nitronate monooxygenase KQ253_02900 PF16861 Carbamoyltransferase C-terminus KQ253_02900 PF02543 Carbamoyltransferase N-terminus KQ253_02910 PF01810 LysE type translocator KQ253_02920 PF09339 IclR helix-turn-helix domain KQ253_02925 PF00108 Thiolase, N-terminal domain KQ253_02925 PF02803 Thiolase, C-terminal domain KQ253_02930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ253_02930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ253_02930 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KQ253_02940 PF00378 Enoyl-CoA hydratase/isomerase KQ253_02945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_02945 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_02945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_02950 PF07690 Major Facilitator Superfamily KQ253_02955 PF01144 Coenzyme A transferase KQ253_02960 PF01144 Coenzyme A transferase KQ253_02970 PF07690 Major Facilitator Superfamily KQ253_02980 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_02980 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ253_02980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_02980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_02995 PF03466 LysR substrate binding domain KQ253_03000 PF00682 HMGL-like KQ253_03005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ253_03005 PF18140 Propionyl-coenzyme A carboxylase BT domain KQ253_03005 PF00364 Biotin-requiring enzyme KQ253_03005 PF00289 Biotin carboxylase, N-terminal domain KQ253_03005 PF02785 Biotin carboxylase C-terminal domain KQ253_03010 PF00378 Enoyl-CoA hydratase/isomerase KQ253_03015 PF01039 Carboxyl transferase domain KQ253_03020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_03020 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_03020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_03025 PF00440 Bacterial regulatory proteins, tetR family KQ253_03030 PF13193 AMP-binding enzyme C-terminal domain KQ253_03030 PF00501 AMP-binding enzyme KQ253_03050 PF03466 LysR substrate binding domain KQ253_03050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03085 PF02464 Competence-damaged protein KQ253_03085 PF18146 Damage-inducible protein CinA KH domain KQ253_03085 PF00994 Probable molybdopterin binding domain KQ253_03095 PF18011 C-terminal domain found in long catalases KQ253_03095 PF00199 Catalase KQ253_03095 PF06628 Catalase-related immune-responsive KQ253_03120 PF00717 Peptidase S24-like KQ253_03130 PF13404 AsnC-type helix-turn-helix domain KQ253_03130 PF01037 Lrp/AsnC ligand binding domain KQ253_03140 PF00072 Response regulator receiver domain KQ253_03140 PF09308 LuxQ, periplasmic KQ253_03140 PF00512 His Kinase A (phospho-acceptor) domain KQ253_03140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_03145 PF00072 Response regulator receiver domain KQ253_03160 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_03165 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_03170 PF00005 ABC transporter KQ253_03175 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ253_03180 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ253_03190 PF03466 LysR substrate binding domain KQ253_03190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03195 PF01810 LysE type translocator KQ253_03205 PF00266 Aminotransferase class-V KQ253_03215 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_03220 PF00581 Rhodanese-like domain KQ253_03230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03230 PF03466 LysR substrate binding domain KQ253_03235 PF02798 Glutathione S-transferase, N-terminal domain KQ253_03245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03245 PF03466 LysR substrate binding domain KQ253_03250 PF03788 LrgA family KQ253_03255 PF04172 LrgB-like family KQ253_03260 PF00155 Aminotransferase class I and II KQ253_03260 PF00392 Bacterial regulatory proteins, gntR family KQ253_03275 PF07690 Major Facilitator Superfamily KQ253_03285 PF03466 LysR substrate binding domain KQ253_03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03290 PF16957 Malonate decarboxylase, alpha subunit, transporter KQ253_03295 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KQ253_03300 PF06857 Malonate decarboxylase delta subunit (MdcD) KQ253_03305 PF01039 Carboxyl transferase domain KQ253_03315 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KQ253_03320 PF00698 Acyl transferase domain KQ253_03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03335 PF03466 LysR substrate binding domain KQ253_03340 PF00155 Aminotransferase class I and II KQ253_03340 PF00392 Bacterial regulatory proteins, gntR family KQ253_03350 PF02322 Cytochrome bd terminal oxidase subunit II KQ253_03355 PF01654 Cytochrome bd terminal oxidase subunit I KQ253_03370 PF00296 Luciferase-like monooxygenase KQ253_03375 PF00083 Sugar (and other) transporter KQ253_03385 PF13737 Transposase DDE domain KQ253_03390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KQ253_03400 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_03405 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KQ253_03410 PF01177 Asp/Glu/Hydantoin racemase KQ253_03415 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ253_03425 PF03466 LysR substrate binding domain KQ253_03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03435 PF01979 Amidohydrolase family KQ253_03435 PF13382 Adenine deaminase C-terminal domain KQ253_03445 PF03960 ArsC family KQ253_03450 PF01022 Bacterial regulatory protein, arsR family KQ253_03455 PF01758 Sodium Bile acid symporter family KQ253_03460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03460 PF03466 LysR substrate binding domain KQ253_03475 PF13192 Thioredoxin domain KQ253_03475 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_03490 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_03495 PF00588 SpoU rRNA Methylase family KQ253_03500 PF01336 OB-fold nucleic acid binding domain KQ253_03500 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KQ253_03500 PF07733 Bacterial DNA polymerase III alpha NTPase domain KQ253_03500 PF14579 Helix-hairpin-helix motif KQ253_03500 PF02811 PHP domain KQ253_03505 PF17763 Glutaminase/Asparaginase C-terminal domain KQ253_03505 PF00710 Asparaginase, N-terminal KQ253_03510 PF00375 Sodium:dicarboxylate symporter family KQ253_03515 PF00155 Aminotransferase class I and II KQ253_03520 PF01641 SelR domain KQ253_03525 PF00255 Glutathione peroxidase KQ253_03530 PF12852 Cupin KQ253_03530 PF12833 Helix-turn-helix domain KQ253_03540 PF00155 Aminotransferase class I and II KQ253_03545 PF01909 Nucleotidyltransferase domain KQ253_03545 PF01966 HD domain KQ253_03545 PF08335 GlnD PII-uridylyltransferase KQ253_03550 PF02222 ATP-grasp domain KQ253_03560 PF05437 Branched-chain amino acid transport protein (AzlD) KQ253_03565 PF03591 AzlC protein KQ253_03590 PF06071 Protein of unknown function (DUF933) KQ253_03590 PF01926 50S ribosome-binding GTPase KQ253_03595 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_03600 PF00005 ABC transporter KQ253_03600 PF09383 NIL domain KQ253_03605 PF03180 NLPA lipoprotein KQ253_03610 PF03180 NLPA lipoprotein KQ253_03615 PF00296 Luciferase-like monooxygenase KQ253_03625 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ253_03625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_03640 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_03645 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_03650 PF00005 ABC transporter KQ253_03660 PF01037 Lrp/AsnC ligand binding domain KQ253_03665 PF01709 Transcriptional regulator KQ253_03675 PF00440 Bacterial regulatory proteins, tetR family KQ253_03695 PF03466 LysR substrate binding domain KQ253_03695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_03705 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ253_03715 PF00892 EamA-like transporter family KQ253_03735 PF00577 Outer membrane usher protein KQ253_03735 PF13954 PapC N-terminal domain KQ253_03735 PF13953 PapC C-terminal domain KQ253_03740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KQ253_03740 PF02753 Pili assembly chaperone PapD, C-terminal domain KQ253_03745 PF16970 Type-1 fimbrial protein, A KQ253_03760 PF06968 Biotin and Thiamin Synthesis associated domain KQ253_03760 PF04055 Radical SAM superfamily KQ253_03765 PF08331 Domain of unknown function (DUF1730) KQ253_03770 PF03853 YjeF-related protein N-terminus KQ253_03770 PF01256 Carbohydrate kinase KQ253_03775 PF02075 Crossover junction endodeoxyribonuclease RuvC KQ253_03790 PF00905 Penicillin binding protein transpeptidase domain KQ253_03810 PF02772 S-adenosylmethionine synthetase, central domain KQ253_03810 PF00438 S-adenosylmethionine synthetase, N-terminal domain KQ253_03810 PF02773 S-adenosylmethionine synthetase, C-terminal domain KQ253_03815 PF02780 Transketolase, C-terminal domain KQ253_03815 PF02779 Transketolase, pyrimidine binding domain KQ253_03815 PF00456 Transketolase, thiamine diphosphate binding domain KQ253_03825 PF04264 YceI-like domain KQ253_03835 PF09992 Phosphodiester glycosidase KQ253_03845 PF05958 tRNA (Uracil-5-)-methyltransferase KQ253_03850 PF04229 GrpB protein KQ253_03855 PF00171 Aldehyde dehydrogenase family KQ253_03855 PF01619 Proline dehydrogenase KQ253_03855 PF14850 DNA-binding domain of Proline dehydrogenase KQ253_03855 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KQ253_03860 PF01037 Lrp/AsnC ligand binding domain KQ253_03865 PF00474 Sodium:solute symporter family KQ253_03870 PF02146 Sir2 family KQ253_03875 PF01597 Glycine cleavage H-protein KQ253_03880 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ253_03880 PF12833 Helix-turn-helix domain KQ253_03890 PF00664 ABC transporter transmembrane region KQ253_03890 PF00005 ABC transporter KQ253_03895 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KQ253_03900 PF06912 Protein of unknown function (DUF1275) KQ253_03905 PF00375 Sodium:dicarboxylate symporter family KQ253_03920 PF08007 Cupin superfamily protein KQ253_03925 PF02545 Maf-like protein KQ253_03935 PF00162 Phosphoglycerate kinase KQ253_03945 PF01116 Fructose-bisphosphate aldolase class-II KQ253_03950 PF00639 PPIC-type PPIASE domain KQ253_03950 PF09312 SurA N-terminal domain KQ253_03955 PF04453 LPS transport system D KQ253_03955 PF03968 OstA-like protein KQ253_03960 PF01636 Phosphotransferase enzyme family KQ253_03965 PF00483 Nucleotidyl transferase KQ253_03970 PF02527 rRNA small subunit methyltransferase G KQ253_03975 PF13614 AAA domain KQ253_03980 PF17762 HTH domain found in ParB protein KQ253_03980 PF02195 ParB-like nuclease domain KQ253_03985 PF01618 MotA/TolQ/ExbB proton channel family KQ253_03995 PF00664 ABC transporter transmembrane region KQ253_03995 PF00005 ABC transporter KQ253_04000 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KQ253_04005 PF02348 Cytidylyltransferase KQ253_04010 PF09115 DNA polymerase III, delta subunit, C terminal KQ253_04020 PF01026 TatD related DNase KQ253_04035 PF07963 Prokaryotic N-terminal methylation motif KQ253_04035 PF02501 Type II secretion system (T2SS), protein I KQ253_04040 PF11612 Type II secretion system (T2SS), protein J KQ253_04040 PF07963 Prokaryotic N-terminal methylation motif KQ253_04045 PF03934 Type II secretion system (T2SS), protein K KQ253_04055 PF03167 Uracil DNA glycosylase superfamily KQ253_04065 PF14437 MafB19-like deaminase KQ253_04075 PF02224 Cytidylate kinase KQ253_04080 PF00575 S1 RNA binding domain KQ253_04085 PF00216 Bacterial DNA-binding protein KQ253_04095 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KQ253_04110 PF00665 Integrase core domain KQ253_04110 PF13936 Helix-turn-helix domain KQ253_04115 PF01636 Phosphotransferase enzyme family KQ253_04120 PF13936 Helix-turn-helix domain KQ253_04120 PF00665 Integrase core domain KQ253_04135 PF03969 AFG1-like ATPase KQ253_04140 PF00589 Phage integrase family KQ253_04140 PF02899 Phage integrase, N-terminal SAM-like domain KQ253_04190 PF00772 DnaB-like helicase N terminal domain KQ253_04190 PF03796 DnaB-like helicase C terminal domain KQ253_04310 PF10549 ORF11CD3 domain KQ253_04310 PF09669 Phage regulatory protein Rha (Phage_pRha) KQ253_04340 PF01464 Transglycosylase SLT domain KQ253_04340 PF01551 Peptidase family M23 KQ253_04340 PF10145 Phage-related minor tail protein KQ253_04400 PF01274 Malate synthase KQ253_04410 PF02472 Biopolymer transport protein ExbD/TolR KQ253_04415 PF02472 Biopolymer transport protein ExbD/TolR KQ253_04420 PF01618 MotA/TolQ/ExbB proton channel family KQ253_04430 PF07715 TonB-dependent Receptor Plug Domain KQ253_04430 PF00593 TonB dependent receptor KQ253_04455 PF13737 Transposase DDE domain KQ253_04465 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_04470 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_04475 PF00005 ABC transporter KQ253_04475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KQ253_04490 PF00459 Inositol monophosphatase family KQ253_04500 PF01649 Ribosomal protein S20 KQ253_04505 PF13460 NAD(P)H-binding KQ253_04510 PF03737 Aldolase/RraA KQ253_04530 PF00270 DEAD/DEAH box helicase KQ253_04530 PF00271 Helicase conserved C-terminal domain KQ253_04530 PF03461 TRCF domain KQ253_04530 PF17757 UvrB interaction domain KQ253_04530 PF02559 CarD-like/TRCF domain KQ253_04540 PF00211 Adenylate and Guanylate cyclase catalytic domain KQ253_04545 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_04550 PF00012 Hsp70 protein KQ253_04555 PF07743 HSCB C-terminal oligomerisation domain KQ253_04555 PF00226 DnaJ domain KQ253_04560 PF01521 Iron-sulphur cluster biosynthesis KQ253_04565 PF01592 NifU-like N terminal domain KQ253_04570 PF00266 Aminotransferase class-V KQ253_04575 PF02082 Transcriptional regulator KQ253_04590 PF00216 Bacterial DNA-binding protein KQ253_04595 PF00639 PPIC-type PPIASE domain KQ253_04595 PF09312 SurA N-terminal domain KQ253_04600 PF12852 Cupin KQ253_04600 PF12833 Helix-turn-helix domain KQ253_04605 PF00487 Fatty acid desaturase KQ253_04610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_04610 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_04610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_04615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_04615 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_04615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_04620 PF03109 ABC1 family KQ253_04630 PF04073 Aminoacyl-tRNA editing domain KQ253_04635 PF06276 Ferric iron reductase FhuF-like transporter KQ253_04635 PF04183 IucA / IucC family KQ253_04640 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KQ253_04645 PF07690 Major Facilitator Superfamily KQ253_04650 PF06276 Ferric iron reductase FhuF-like transporter KQ253_04650 PF04183 IucA / IucC family KQ253_04655 PF06276 Ferric iron reductase FhuF-like transporter KQ253_04655 PF04183 IucA / IucC family KQ253_04665 PF03737 Aldolase/RraA KQ253_04670 PF07715 TonB-dependent Receptor Plug Domain KQ253_04670 PF00593 TonB dependent receptor KQ253_04695 PF13419 Haloacid dehalogenase-like hydrolase KQ253_04705 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KQ253_04710 PF02277 Phosphoribosyltransferase KQ253_04715 PF00300 Histidine phosphatase superfamily (branch 1) KQ253_04725 PF02654 Cobalamin-5-phosphate synthase KQ253_04730 PF00793 DAHP synthetase I family KQ253_04735 PF01925 Sulfite exporter TauE/SafE KQ253_04755 PF07715 TonB-dependent Receptor Plug Domain KQ253_04755 PF00593 TonB dependent receptor KQ253_04760 PF02684 Lipid-A-disaccharide synthetase KQ253_04770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ253_04775 PF00005 ABC transporter KQ253_04815 PF01230 HIT domain KQ253_04860 PF00561 alpha/beta hydrolase fold KQ253_04865 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ253_04875 PF02575 YbaB/EbfC DNA-binding family KQ253_04880 PF13662 Toprim domain KQ253_04880 PF02132 RecR protein KQ253_04885 PF01612 3'-5' exonuclease KQ253_04885 PF00570 HRDC domain KQ253_04905 PF05166 YcgL domain KQ253_04915 PF00004 ATPase family associated with various cellular activities (AAA) KQ253_04915 PF17862 AAA+ lid domain KQ253_04915 PF01434 Peptidase family M41 KQ253_04925 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_04930 PF05175 Methyltransferase small domain KQ253_04935 PF01264 Chorismate synthase KQ253_04940 PF00990 Diguanylate cyclase, GGDEF domain KQ253_04940 PF08448 PAS fold KQ253_04955 PF04055 Radical SAM superfamily KQ253_04960 PF00676 Dehydrogenase E1 component KQ253_04965 PF02780 Transketolase, C-terminal domain KQ253_04965 PF02779 Transketolase, pyrimidine binding domain KQ253_04970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ253_04970 PF00364 Biotin-requiring enzyme KQ253_04970 PF02817 e3 binding domain KQ253_04975 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_04975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ253_04980 PF00106 short chain dehydrogenase KQ253_04985 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_04985 PF00107 Zinc-binding dehydrogenase KQ253_04990 PF01062 Bestrophin, RFP-TM, chloride channel KQ253_04995 PF00158 Sigma-54 interaction domain KQ253_04995 PF00072 Response regulator receiver domain KQ253_04995 PF02954 Bacterial regulatory protein, Fis family KQ253_05000 PF04273 Putative phosphatase (DUF442) KQ253_05000 PF00753 Metallo-beta-lactamase superfamily KQ253_05005 PF04273 Putative phosphatase (DUF442) KQ253_05005 PF00753 Metallo-beta-lactamase superfamily KQ253_05010 PF01925 Sulfite exporter TauE/SafE KQ253_05025 PF06445 GyrI-like small molecule binding domain KQ253_05025 PF12833 Helix-turn-helix domain KQ253_05030 PF01638 HxlR-like helix-turn-helix KQ253_05035 PF02525 Flavodoxin-like fold KQ253_05045 PF00392 Bacterial regulatory proteins, gntR family KQ253_05045 PF07702 UTRA domain KQ253_05060 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KQ253_05065 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_05070 PF00005 ABC transporter KQ253_05085 PF00083 Sugar (and other) transporter KQ253_05090 PF07715 TonB-dependent Receptor Plug Domain KQ253_05090 PF00593 TonB dependent receptor KQ253_05095 PF10415 Fumarase C C-terminus KQ253_05095 PF00206 Lyase KQ253_05110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_05110 PF03466 LysR substrate binding domain KQ253_05115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_05115 PF03466 LysR substrate binding domain KQ253_05120 PF02803 Thiolase, C-terminal domain KQ253_05120 PF00108 Thiolase, N-terminal domain KQ253_05125 PF02667 Short chain fatty acid transporter KQ253_05130 PF01144 Coenzyme A transferase KQ253_05135 PF01144 Coenzyme A transferase KQ253_05140 PF03466 LysR substrate binding domain KQ253_05140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_05160 PF00440 Bacterial regulatory proteins, tetR family KQ253_05180 PF12833 Helix-turn-helix domain KQ253_05180 PF06719 AraC-type transcriptional regulator N-terminus KQ253_05185 PF07690 Major Facilitator Superfamily KQ253_05190 PF01738 Dienelactone hydrolase family KQ253_05205 PF01613 Flavin reductase like domain KQ253_05215 PF14525 AraC-binding-like domain KQ253_05215 PF12833 Helix-turn-helix domain KQ253_05220 PF00970 Oxidoreductase FAD-binding domain KQ253_05220 PF00175 Oxidoreductase NAD-binding domain KQ253_05220 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_05225 PF00866 Ring hydroxylating beta subunit KQ253_05230 PF00355 Rieske [2Fe-2S] domain KQ253_05230 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ253_05235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_05235 PF03459 TOBE domain KQ253_05245 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_05250 PF00005 ABC transporter KQ253_05250 PF03459 TOBE domain KQ253_05255 PF00106 short chain dehydrogenase KQ253_05260 PF00857 Isochorismatase family KQ253_05260 PF00550 Phosphopantetheine attachment site KQ253_05270 PF00149 Calcineurin-like phosphoesterase KQ253_05275 PF02503 Polyphosphate kinase middle domain KQ253_05275 PF17941 Polyphosphate kinase C-terminal domain 1 KQ253_05275 PF13089 Polyphosphate kinase N-terminal domain KQ253_05275 PF13090 Polyphosphate kinase C-terminal domain 2 KQ253_05280 PF08042 PqqA family KQ253_05285 PF12706 Beta-lactamase superfamily domain KQ253_05290 PF03070 TENA/THI-4/PQQC family KQ253_05295 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KQ253_05300 PF04055 Radical SAM superfamily KQ253_05300 PF13186 Iron-sulfur cluster-binding domain KQ253_05305 PF01244 Membrane dipeptidase (Peptidase family M19) KQ253_05325 PF13091 PLD-like domain KQ253_05350 PF00199 Catalase KQ253_05360 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_05360 PF00107 Zinc-binding dehydrogenase KQ253_05375 PF13954 PapC N-terminal domain KQ253_05375 PF00577 Outer membrane usher protein KQ253_05375 PF13953 PapC C-terminal domain KQ253_05380 PF02753 Pili assembly chaperone PapD, C-terminal domain KQ253_05380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KQ253_05385 PF16970 Type-1 fimbrial protein, A KQ253_05580 PF00248 Aldo/keto reductase family KQ253_05585 PF00293 NUDIX domain KQ253_05590 PF13737 Transposase DDE domain KQ253_05595 PF00933 Glycosyl hydrolase family 3 N terminal domain KQ253_05600 PF00872 Transposase, Mutator family KQ253_05605 PF00732 GMC oxidoreductase KQ253_05605 PF05199 GMC oxidoreductase KQ253_05615 PF00356 Bacterial regulatory proteins, lacI family KQ253_05625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ253_05625 PF00205 Thiamine pyrophosphate enzyme, central domain KQ253_05625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ253_05635 PF02264 LamB porin KQ253_05640 PF05690 Thiazole biosynthesis protein ThiG KQ253_05650 PF00459 Inositol monophosphatase family KQ253_05655 PF07690 Major Facilitator Superfamily KQ253_05670 PF00732 GMC oxidoreductase KQ253_05670 PF05199 GMC oxidoreductase KQ253_05675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ253_05675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ253_05675 PF00205 Thiamine pyrophosphate enzyme, central domain KQ253_05680 PF00815 Histidinol dehydrogenase KQ253_05685 PF04172 LrgB-like family KQ253_05690 PF00356 Bacterial regulatory proteins, lacI family KQ253_05695 PF01738 Dienelactone hydrolase family KQ253_05700 PF00892 EamA-like transporter family KQ253_05705 PF05199 GMC oxidoreductase KQ253_05705 PF00732 GMC oxidoreductase KQ253_05710 PF07690 Major Facilitator Superfamily KQ253_05725 PF02264 LamB porin KQ253_05735 PF01958 Domain of unknown function DUF108 KQ253_05735 PF03447 Homoserine dehydrogenase, NAD binding domain KQ253_05740 PF00561 alpha/beta hydrolase fold KQ253_05750 PF05199 GMC oxidoreductase KQ253_05750 PF00732 GMC oxidoreductase KQ253_05755 PF05544 Proline racemase KQ253_05760 PF00171 Aldehyde dehydrogenase family KQ253_05775 PF01266 FAD dependent oxidoreductase KQ253_05790 PF01593 Flavin containing amine oxidoreductase KQ253_05795 PF00743 Flavin-binding monooxygenase-like KQ253_05800 PF12146 Serine aminopeptidase, S33 KQ253_05810 PF00873 AcrB/AcrD/AcrF family KQ253_05815 PF00529 HlyD membrane-fusion protein of T1SS KQ253_05815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ253_05820 PF00072 Response regulator receiver domain KQ253_05820 PF00486 Transcriptional regulatory protein, C terminal KQ253_05825 PF00512 His Kinase A (phospho-acceptor) domain KQ253_05825 PF16527 Two-component sensor protein CpxA, periplasmic domain KQ253_05825 PF00672 HAMP domain KQ253_05825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_05835 PF12833 Helix-turn-helix domain KQ253_05835 PF02311 AraC-like ligand binding domain KQ253_05840 PF12146 Serine aminopeptidase, S33 KQ253_05850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_05850 PF03466 LysR substrate binding domain KQ253_05855 PF12146 Serine aminopeptidase, S33 KQ253_05905 PF02824 TGS domain KQ253_05905 PF13291 ACT domain KQ253_05905 PF04607 Region found in RelA / SpoT proteins KQ253_05915 PF01975 Survival protein SurE KQ253_05960 PF13936 Helix-turn-helix domain KQ253_05960 PF00665 Integrase core domain KQ253_05975 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KQ253_05980 PF14572 Phosphoribosyl synthetase-associated domain KQ253_05980 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KQ253_06000 PF00005 ABC transporter KQ253_06005 PF01032 FecCD transport family KQ253_06015 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_06015 PF00107 Zinc-binding dehydrogenase KQ253_06025 PF06719 AraC-type transcriptional regulator N-terminus KQ253_06025 PF12833 Helix-turn-helix domain KQ253_06030 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ253_06030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ253_06035 PF07690 Major Facilitator Superfamily KQ253_06040 PF01370 NAD dependent epimerase/dehydratase family KQ253_06045 PF03466 LysR substrate binding domain KQ253_06045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_06055 PF00920 Dehydratase family KQ253_06060 PF00171 Aldehyde dehydrogenase family KQ253_06065 PF01047 MarR family KQ253_06070 PF01613 Flavin reductase like domain KQ253_06075 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ253_06080 PF07690 Major Facilitator Superfamily KQ253_06080 PF00083 Sugar (and other) transporter KQ253_06090 PF00665 Integrase core domain KQ253_06090 PF13936 Helix-turn-helix domain KQ253_06100 PF03328 HpcH/HpaI aldolase/citrate lyase family KQ253_06105 PF01557 Fumarylacetoacetate (FAA) hydrolase family KQ253_06110 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase KQ253_06115 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KQ253_06120 PF00171 Aldehyde dehydrogenase family KQ253_06125 PF01557 Fumarylacetoacetate (FAA) hydrolase family KQ253_06130 PF01557 Fumarylacetoacetate (FAA) hydrolase family KQ253_06140 PF07690 Major Facilitator Superfamily KQ253_06145 PF00579 tRNA synthetases class I (W and Y) KQ253_06160 PF00171 Aldehyde dehydrogenase family KQ253_06185 PF01266 FAD dependent oxidoreductase KQ253_06205 PF01266 FAD dependent oxidoreductase KQ253_06210 PF12833 Helix-turn-helix domain KQ253_06210 PF00072 Response regulator receiver domain KQ253_06225 PF00529 HlyD membrane-fusion protein of T1SS KQ253_06225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ253_06245 PF13018 Extended Signal Peptide of Type V secretion system KQ253_06245 PF13332 Hemagglutinin repeat KQ253_06245 PF05860 haemagglutination activity domain KQ253_06245 PF04829 Pre-toxin domain with VENN motif KQ253_06250 PF08479 POTRA domain, ShlB-type KQ253_06250 PF17287 POTRA domain KQ253_06250 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KQ253_06270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_06270 PF03466 LysR substrate binding domain KQ253_06280 PF13737 Transposase DDE domain KQ253_06285 PF08450 SMP-30/Gluconolactonase/LRE-like region KQ253_06290 PF00392 Bacterial regulatory proteins, gntR family KQ253_06290 PF07702 UTRA domain KQ253_06300 PF04909 Amidohydrolase KQ253_06305 PF07690 Major Facilitator Superfamily KQ253_06345 PF07687 Peptidase dimerisation domain KQ253_06345 PF01546 Peptidase family M20/M25/M40 KQ253_06355 PF02254 TrkA-N domain KQ253_06355 PF00999 Sodium/hydrogen exchanger family KQ253_06360 PF07995 Glucose / Sorbosone dehydrogenase KQ253_06365 PF03466 LysR substrate binding domain KQ253_06365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_06370 PF00857 Isochorismatase family KQ253_06380 PF08359 YsiA-like protein, C-terminal region KQ253_06380 PF00440 Bacterial regulatory proteins, tetR family KQ253_06385 PF12706 Beta-lactamase superfamily domain KQ253_06395 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_06405 PF09278 MerR, DNA binding KQ253_06405 PF00376 MerR family regulatory protein KQ253_06410 PF01872 RibD C-terminal domain KQ253_06415 PF00106 short chain dehydrogenase KQ253_06420 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_06420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ253_06425 PF01047 MarR family KQ253_06430 PF07859 alpha/beta hydrolase fold KQ253_06445 PF06628 Catalase-related immune-responsive KQ253_06445 PF00199 Catalase KQ253_06450 PF00561 alpha/beta hydrolase fold KQ253_06460 PF00171 Aldehyde dehydrogenase family KQ253_06465 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_06465 PF00107 Zinc-binding dehydrogenase KQ253_06475 PF04341 Protein of unknown function, DUF485 KQ253_06480 PF00501 AMP-binding enzyme KQ253_06480 PF13193 AMP-binding enzyme C-terminal domain KQ253_06485 PF02954 Bacterial regulatory protein, Fis family KQ253_06485 PF00158 Sigma-54 interaction domain KQ253_06485 PF06506 Propionate catabolism activator KQ253_06495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_06495 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_06495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_06510 PF01636 Phosphotransferase enzyme family KQ253_06515 PF00171 Aldehyde dehydrogenase family KQ253_06525 PF07690 Major Facilitator Superfamily KQ253_06530 PF00920 Dehydratase family KQ253_06535 PF00392 Bacterial regulatory proteins, gntR family KQ253_06535 PF07729 FCD domain KQ253_06545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_06545 PF03466 LysR substrate binding domain KQ253_06550 PF13378 Enolase C-terminal domain-like KQ253_06550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KQ253_06555 PF02426 Muconolactone delta-isomerase KQ253_06560 PF04444 Catechol dioxygenase N terminus KQ253_06560 PF00775 Dioxygenase KQ253_06565 PF01144 Coenzyme A transferase KQ253_06570 PF01144 Coenzyme A transferase KQ253_06575 PF00108 Thiolase, N-terminal domain KQ253_06575 PF02803 Thiolase, C-terminal domain KQ253_06580 PF12146 Serine aminopeptidase, S33 KQ253_06585 PF00171 Aldehyde dehydrogenase family KQ253_06595 PF02727 Copper amine oxidase, N2 domain KQ253_06595 PF01179 Copper amine oxidase, enzyme domain KQ253_06595 PF07833 Copper amine oxidase N-terminal domain KQ253_06595 PF02728 Copper amine oxidase, N3 domain KQ253_06600 PF12833 Helix-turn-helix domain KQ253_06600 PF02311 AraC-like ligand binding domain KQ253_06605 PF01613 Flavin reductase like domain KQ253_06610 PF00175 Oxidoreductase NAD-binding domain KQ253_06610 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_06625 PF00355 Rieske [2Fe-2S] domain KQ253_06625 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ253_06640 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ253_06645 PF01425 Amidase KQ253_06655 PF07690 Major Facilitator Superfamily KQ253_06665 PF00106 short chain dehydrogenase KQ253_06680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_06680 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_06680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_06685 PF03466 LysR substrate binding domain KQ253_06685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_06690 PF09339 IclR helix-turn-helix domain KQ253_06690 PF01614 Bacterial transcriptional regulator KQ253_06695 PF00753 Metallo-beta-lactamase superfamily KQ253_06705 PF04143 Sulphur transport KQ253_06715 PF01011 PQQ enzyme repeat KQ253_06715 PF13360 PQQ-like domain KQ253_06720 PF04966 Carbohydrate-selective porin, OprB family KQ253_06725 PF05048 Periplasmic copper-binding protein (NosD) KQ253_06730 PF01487 Type I 3-dehydroquinase KQ253_06735 PF00775 Dioxygenase KQ253_06740 PF00775 Dioxygenase KQ253_06740 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KQ253_06745 PF02627 Carboxymuconolactone decarboxylase family KQ253_06750 PF07690 Major Facilitator Superfamily KQ253_06755 PF00561 alpha/beta hydrolase fold KQ253_06760 PF10397 Adenylosuccinate lyase C-terminus KQ253_06760 PF00206 Lyase KQ253_06765 PF02803 Thiolase, C-terminal domain KQ253_06765 PF00108 Thiolase, N-terminal domain KQ253_06770 PF01144 Coenzyme A transferase KQ253_06775 PF01144 Coenzyme A transferase KQ253_06780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KQ253_06785 PF04977 Septum formation initiator KQ253_06790 PF04239 Protein of unknown function (DUF421) KQ253_06795 PF03952 Enolase, N-terminal domain KQ253_06795 PF00113 Enolase, C-terminal TIM barrel domain KQ253_06800 PF00793 DAHP synthetase I family KQ253_06805 PF06418 CTP synthase N-terminus KQ253_06805 PF00117 Glutamine amidotransferase class-I KQ253_06835 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_06835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ253_06850 PF00793 DAHP synthetase I family KQ253_06855 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KQ253_06860 PF17871 AAA lid domain KQ253_06860 PF07724 AAA domain (Cdc48 subfamily) KQ253_06860 PF00004 ATPase family associated with various cellular activities (AAA) KQ253_06860 PF02861 Clp amino terminal domain, pathogenicity island component KQ253_06860 PF10431 C-terminal, D2-small domain, of ClpB protein KQ253_06865 PF02617 ATP-dependent Clp protease adaptor protein ClpS KQ253_06875 PF01118 Semialdehyde dehydrogenase, NAD binding domain KQ253_06875 PF02774 Semialdehyde dehydrogenase, dimerisation domain KQ253_06890 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KQ253_06895 PF00585 C-terminal regulatory domain of Threonine dehydratase KQ253_06895 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_06900 PF02254 TrkA-N domain KQ253_06900 PF02080 TrkA-C domain KQ253_06905 PF02386 Cation transport protein KQ253_06910 PF02253 Phospholipase A1 KQ253_06915 PF08367 Peptidase M16C associated KQ253_06915 PF00675 Insulinase (Peptidase family M16) KQ253_06915 PF05193 Peptidase M16 inactive domain KQ253_06925 PF00294 pfkB family carbohydrate kinase KQ253_06935 PF07290 Protein of unknown function (DUF1449) KQ253_06945 PF01654 Cytochrome bd terminal oxidase subunit I KQ253_06950 PF02322 Cytochrome bd terminal oxidase subunit II KQ253_06955 PF08173 Membrane bound YbgT-like protein KQ253_06970 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KQ253_06980 PF02881 SRP54-type protein, helical bundle domain KQ253_06980 PF00448 SRP54-type protein, GTPase domain KQ253_07005 PF00571 CBS domain KQ253_07005 PF00478 IMP dehydrogenase / GMP reductase domain KQ253_07010 PF00202 Aminotransferase class-III KQ253_07015 PF00462 Glutaredoxin KQ253_07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_07025 PF03466 LysR substrate binding domain KQ253_07030 PF00557 Metallopeptidase family M24 KQ253_07035 PF05525 Branched-chain amino acid transport protein KQ253_07060 PF00381 PTS HPr component phosphorylation site KQ253_07060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KQ253_07060 PF00391 PEP-utilising enzyme, mobile domain KQ253_07060 PF05524 PEP-utilising enzyme, N-terminal KQ253_07060 PF02896 PEP-utilising enzyme, TIM barrel domain KQ253_07065 PF00294 pfkB family carbohydrate kinase KQ253_07070 PF02378 Phosphotransferase system, EIIC KQ253_07070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KQ253_07090 PF00563 EAL domain KQ253_07090 PF00990 Diguanylate cyclase, GGDEF domain KQ253_07090 PF03707 Bacterial signalling protein N terminal repeat KQ253_07100 PF07995 Glucose / Sorbosone dehydrogenase KQ253_07105 PF02586 SOS response associated peptidase (SRAP) KQ253_07110 PF01740 STAS domain KQ253_07110 PF00916 Sulfate permease family KQ253_07115 PF05922 Peptidase inhibitor I9 KQ253_07115 PF00082 Subtilase family KQ253_07120 PF13737 Transposase DDE domain KQ253_07130 PF00324 Amino acid permease KQ253_07135 PF00266 Aminotransferase class-V KQ253_07140 PF01037 Lrp/AsnC ligand binding domain KQ253_07165 PF13419 Haloacid dehalogenase-like hydrolase KQ253_07170 PF01479 S4 domain KQ253_07175 PF00154 recA bacterial DNA recombination protein KQ253_07180 PF02631 RecX family KQ253_07195 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_07195 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KQ253_07200 PF07977 FabA-like domain KQ253_07205 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_07205 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KQ253_07215 PF07244 Surface antigen variable number repeat KQ253_07215 PF01103 Surface antigen KQ253_07220 PF17820 PDZ domain KQ253_07220 PF02163 Peptidase family M50 KQ253_07220 PF13180 PDZ domain KQ253_07225 PF13288 DXP reductoisomerase C-terminal domain KQ253_07225 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KQ253_07225 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KQ253_07235 PF01255 Putative undecaprenyl diphosphate synthase KQ253_07240 PF01765 Ribosome recycling factor KQ253_07245 PF00696 Amino acid kinase family KQ253_07250 PF04055 Radical SAM superfamily KQ253_07250 PF00919 Uncharacterized protein family UPF0004 KQ253_07250 PF18693 TRAM domain KQ253_07260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_07260 PF00512 His Kinase A (phospho-acceptor) domain KQ253_07260 PF00989 PAS fold KQ253_07265 PF00072 Response regulator receiver domain KQ253_07265 PF00158 Sigma-54 interaction domain KQ253_07265 PF02954 Bacterial regulatory protein, Fis family KQ253_07270 PF00440 Bacterial regulatory proteins, tetR family KQ253_07275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KQ253_07275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KQ253_07285 PF02542 YgbB family KQ253_07295 PF01266 FAD dependent oxidoreductase KQ253_07315 PF00206 Lyase KQ253_07315 PF10415 Fumarase C C-terminus KQ253_07320 PF16363 GDP-mannose 4,6 dehydratase KQ253_07325 PF02635 DsrE/DsrF-like family KQ253_07345 PF00892 EamA-like transporter family KQ253_07350 PF00155 Aminotransferase class I and II KQ253_07350 PF00392 Bacterial regulatory proteins, gntR family KQ253_07355 PF01638 HxlR-like helix-turn-helix KQ253_07360 PF03454 MoeA C-terminal region (domain IV) KQ253_07360 PF03453 MoeA N-terminal region (domain I and II) KQ253_07360 PF00994 Probable molybdopterin binding domain KQ253_07365 PF01967 MoaC family KQ253_07365 PF00994 Probable molybdopterin binding domain KQ253_07370 PF02391 MoaE protein KQ253_07380 PF06463 Molybdenum Cofactor Synthesis C KQ253_07380 PF04055 Radical SAM superfamily KQ253_07385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ253_07385 PF01568 Molydopterin dinucleotide binding domain KQ253_07385 PF00384 Molybdopterin oxidoreductase KQ253_07390 PF12804 MobA-like NTP transferase domain KQ253_07395 PF01568 Molydopterin dinucleotide binding domain KQ253_07395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ253_07395 PF00384 Molybdopterin oxidoreductase KQ253_07395 PF04324 BFD-like [2Fe-2S] binding domain KQ253_07400 PF18267 Rubredoxin NAD+ reductase C-terminal domain KQ253_07400 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_07400 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ253_07400 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ253_07400 PF04324 BFD-like [2Fe-2S] binding domain KQ253_07405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ253_07405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ253_07405 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_07405 PF13806 Rieske-like [2Fe-2S] domain KQ253_07405 PF18267 Rubredoxin NAD+ reductase C-terminal domain KQ253_07405 PF04324 BFD-like [2Fe-2S] binding domain KQ253_07415 PF00072 Response regulator receiver domain KQ253_07415 PF00486 Transcriptional regulatory protein, C terminal KQ253_07420 PF00005 ABC transporter KQ253_07425 PF13438 Domain of unknown function (DUF4113) KQ253_07425 PF00817 impB/mucB/samB family KQ253_07425 PF11799 impB/mucB/samB family C-terminal domain KQ253_07430 PF01220 Dehydroquinase class II KQ253_07435 PF00364 Biotin-requiring enzyme KQ253_07440 PF02785 Biotin carboxylase C-terminal domain KQ253_07440 PF00289 Biotin carboxylase, N-terminal domain KQ253_07440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ253_07480 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KQ253_07650 PF13936 Helix-turn-helix domain KQ253_07650 PF00665 Integrase core domain KQ253_07680 PF01695 IstB-like ATP binding protein KQ253_07690 PF00145 C-5 cytosine-specific DNA methylase KQ253_07775 PF00929 Exonuclease KQ253_07835 PF01645 Conserved region in glutamate synthase KQ253_07850 PF01565 FAD binding domain KQ253_07850 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KQ253_07855 PF01451 Low molecular weight phosphotyrosine protein phosphatase KQ253_07865 PF00465 Iron-containing alcohol dehydrogenase KQ253_07870 PF03061 Thioesterase superfamily KQ253_07875 PF04185 Phosphoesterase family KQ253_07875 PF05506 Domain of unknown function (DUF756) KQ253_07880 PF12170 DNA polymerase III tau subunit V interacting with alpha KQ253_07880 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KQ253_07880 PF12169 DNA polymerase III subunits gamma and tau domain III KQ253_07885 PF07690 Major Facilitator Superfamily KQ253_07895 PF00144 Beta-lactamase KQ253_07900 PF01575 MaoC like domain KQ253_07910 PF00108 Thiolase, N-terminal domain KQ253_07910 PF02803 Thiolase, C-terminal domain KQ253_07920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_07920 PF03466 LysR substrate binding domain KQ253_07925 PF00923 Transaldolase/Fructose-6-phosphate aldolase KQ253_07930 PF01810 LysE type translocator KQ253_07935 PF01037 Lrp/AsnC ligand binding domain KQ253_07940 PF03594 Benzoate membrane transport protein KQ253_07945 PF02308 MgtC family KQ253_07950 PF00690 Cation transporter/ATPase, N-terminus KQ253_07950 PF00689 Cation transporting ATPase, C-terminus KQ253_07970 PF00582 Universal stress protein family KQ253_07975 PF00005 ABC transporter KQ253_07975 PF12848 ABC transporter KQ253_07995 PF00593 TonB dependent receptor KQ253_07995 PF07715 TonB-dependent Receptor Plug Domain KQ253_08025 PF00924 Mechanosensitive ion channel KQ253_08035 PF00440 Bacterial regulatory proteins, tetR family KQ253_08045 PF13936 Helix-turn-helix domain KQ253_08045 PF00665 Integrase core domain KQ253_08050 PF01037 Lrp/AsnC ligand binding domain KQ253_08055 PF01817 Chorismate mutase type II KQ253_08075 PF11940 Domain of unknown function (DUF3458) Ig-like fold KQ253_08075 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KQ253_08075 PF01433 Peptidase family M1 domain KQ253_08090 PF02110 Hydroxyethylthiazole kinase family KQ253_08100 PF14493 Helix-turn-helix domain KQ253_08100 PF05970 PIF1-like helicase KQ253_08105 PF00465 Iron-containing alcohol dehydrogenase KQ253_08120 PF00171 Aldehyde dehydrogenase family KQ253_08125 PF13520 Amino acid permease KQ253_08130 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KQ253_08135 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KQ253_08140 PF00117 Glutamine amidotransferase class-I KQ253_08140 PF00958 GMP synthase C terminal domain KQ253_08140 PF02540 NAD synthase KQ253_08145 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ253_08145 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KQ253_08150 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KQ253_08155 PF00149 Calcineurin-like phosphoesterase KQ253_08165 PF00881 Nitroreductase family KQ253_08175 PF17209 Hfq protein KQ253_08185 PF01119 DNA mismatch repair protein, C-terminal domain KQ253_08185 PF08676 MutL C terminal dimerisation domain KQ253_08190 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KQ253_08195 PF01479 S4 domain KQ253_08195 PF00849 RNA pseudouridylate synthase KQ253_08210 PF00849 RNA pseudouridylate synthase KQ253_08210 PF01479 S4 domain KQ253_08220 PF04284 Protein of unknown function (DUF441) KQ253_08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_08225 PF03466 LysR substrate binding domain KQ253_08265 PF00216 Bacterial DNA-binding protein KQ253_08295 PF13401 AAA domain KQ253_08295 PF01471 Putative peptidoglycan binding domain KQ253_08320 PF10502 Signal peptidase, peptidase S26 KQ253_08355 PF03237 Terminase-like family KQ253_08370 PF06074 Protein of unknown function (DUF935) KQ253_08375 PF04233 Phage Mu protein F like protein KQ253_08380 PF05069 Phage virion morphogenesis family KQ253_08395 PF10124 Mu-like prophage major head subunit gpT KQ253_08490 PF07690 Major Facilitator Superfamily KQ253_08495 PF00027 Cyclic nucleotide-binding domain KQ253_08495 PF00520 Ion transport protein KQ253_08505 PF11791 Aconitate B N-terminal domain KQ253_08505 PF06434 Aconitate hydratase 2 N-terminus KQ253_08505 PF00330 Aconitase family (aconitate hydratase) KQ253_08520 PF01103 Surface antigen KQ253_08520 PF07244 Surface antigen variable number repeat KQ253_08520 PF17243 POTRA domain TamA domain 1 KQ253_08525 PF07690 Major Facilitator Superfamily KQ253_08530 PF03232 Ubiquinone biosynthesis protein COQ7 KQ253_08540 PF00120 Glutamine synthetase, catalytic domain KQ253_08545 PF00486 Transcriptional regulatory protein, C terminal KQ253_08545 PF00072 Response regulator receiver domain KQ253_08550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_08550 PF00512 His Kinase A (phospho-acceptor) domain KQ253_08550 PF02702 Osmosensitive K+ channel His kinase sensor domain KQ253_08550 PF13493 Domain of unknown function (DUF4118) KQ253_08555 PF02669 K+-transporting ATPase, c chain KQ253_08565 PF03814 Potassium-transporting ATPase A subunit KQ253_08580 PF03109 ABC1 family KQ253_08585 PF00899 ThiF family KQ253_08590 PF01613 Flavin reductase like domain KQ253_08595 PF00501 AMP-binding enzyme KQ253_08595 PF13193 AMP-binding enzyme C-terminal domain KQ253_08600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_08600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_08600 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_08605 PF00106 short chain dehydrogenase KQ253_08610 PF12833 Helix-turn-helix domain KQ253_08615 PF17827 PrmC N-terminal domain KQ253_08615 PF13847 Methyltransferase domain KQ253_08620 PF03462 PCRF domain KQ253_08620 PF00472 RF-1 domain KQ253_08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_08630 PF03466 LysR substrate binding domain KQ253_08645 PF00296 Luciferase-like monooxygenase KQ253_08655 PF13994 PgaD-like protein KQ253_08660 PF00535 Glycosyl transferase family 2 KQ253_08665 PF01522 Polysaccharide deacetylase KQ253_08665 PF14883 Hypothetical glycosyl hydrolase family 13 KQ253_08675 PF03618 Kinase/pyrophosphorylase KQ253_08680 PF02896 PEP-utilising enzyme, TIM barrel domain KQ253_08680 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KQ253_08680 PF00391 PEP-utilising enzyme, mobile domain KQ253_08690 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KQ253_08690 PF06481 COX Aromatic Rich Motif KQ253_08695 PF00115 Cytochrome C and Quinol oxidase polypeptide I KQ253_08700 PF00510 Cytochrome c oxidase subunit III KQ253_08705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KQ253_08710 PF01040 UbiA prenyltransferase family KQ253_08715 PF01250 Ribosomal protein S6 KQ253_08720 PF01084 Ribosomal protein S18 KQ253_08725 PF03948 Ribosomal protein L9, C-terminal domain KQ253_08725 PF01281 Ribosomal protein L9, N-terminal domain KQ253_08730 PF00772 DnaB-like helicase N terminal domain KQ253_08730 PF03796 DnaB-like helicase C terminal domain KQ253_08735 PF00842 Alanine racemase, C-terminal domain KQ253_08735 PF01168 Alanine racemase, N-terminal domain KQ253_08755 PF14403 Circularly permuted ATP-grasp type 2 KQ253_08765 PF13932 GidA associated domain KQ253_08765 PF01134 Glucose inhibited division protein A KQ253_08785 PF02954 Bacterial regulatory protein, Fis family KQ253_08790 PF02142 MGS-like domain KQ253_08790 PF01808 AICARFT/IMPCHase bienzyme KQ253_08795 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KQ253_08795 PF02843 Phosphoribosylglycinamide synthetase, C domain KQ253_08795 PF02844 Phosphoribosylglycinamide synthetase, N domain KQ253_08800 PF03180 NLPA lipoprotein KQ253_08805 PF09383 NIL domain KQ253_08805 PF00005 ABC transporter KQ253_08810 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_08815 PF00753 Metallo-beta-lactamase superfamily KQ253_08815 PF16123 Hydroxyacylglutathione hydrolase C-terminus KQ253_08825 PF00375 Sodium:dicarboxylate symporter family KQ253_08845 PF07995 Glucose / Sorbosone dehydrogenase KQ253_08850 PF00892 EamA-like transporter family KQ253_08855 PF01177 Asp/Glu/Hydantoin racemase KQ253_08865 PF02470 MlaD protein KQ253_08870 PF04403 Paraquat-inducible protein A KQ253_08880 PF06826 Predicted Permease Membrane Region KQ253_08880 PF02080 TrkA-C domain KQ253_08885 PF00155 Aminotransferase class I and II KQ253_08905 PF00083 Sugar (and other) transporter KQ253_08905 PF08946 Osmosensory transporter coiled coil KQ253_08935 PF13737 Transposase DDE domain KQ253_08950 PF00392 Bacterial regulatory proteins, gntR family KQ253_08950 PF07729 FCD domain KQ253_08960 PF03616 Sodium/glutamate symporter KQ253_08965 PF00561 alpha/beta hydrolase fold KQ253_08990 PF04076 Bacterial OB fold (BOF) protein KQ253_09020 PF00324 Amino acid permease KQ253_09025 PF00171 Aldehyde dehydrogenase family KQ253_09030 PF00202 Aminotransferase class-III KQ253_09035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_09035 PF03466 LysR substrate binding domain KQ253_09075 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KQ253_09075 PF17287 POTRA domain KQ253_09075 PF08479 POTRA domain, ShlB-type KQ253_09100 PF00069 Protein kinase domain KQ253_09120 PF00814 Glycoprotease family KQ253_09125 PF01165 Ribosomal protein S21 KQ253_09130 PF09424 Yqey-like protein KQ253_09135 PF01435 Peptidase family M48 KQ253_09140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ253_09140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ253_09155 PF00156 Phosphoribosyl transferase domain KQ253_09160 PF02674 Colicin V production protein KQ253_09165 PF01180 Dihydroorotate dehydrogenase KQ253_09185 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KQ253_09185 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KQ253_09190 PF00881 Nitroreductase family KQ253_09200 PF00271 Helicase conserved C-terminal domain KQ253_09200 PF00270 DEAD/DEAH box helicase KQ253_09205 PF00313 'Cold-shock' DNA-binding domain KQ253_09215 PF00140 Sigma-70 factor, region 1.2 KQ253_09215 PF04542 Sigma-70 region 2 KQ253_09215 PF04545 Sigma-70, region 4 KQ253_09220 PF04241 Protein of unknown function (DUF423) KQ253_09230 PF05690 Thiazole biosynthesis protein ThiG KQ253_09240 PF03883 Peroxide stress protein YaaA KQ253_09250 PF00753 Metallo-beta-lactamase superfamily KQ253_09255 PF07687 Peptidase dimerisation domain KQ253_09255 PF01546 Peptidase family M20/M25/M40 KQ253_09265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KQ253_09270 PF01817 Chorismate mutase type II KQ253_09270 PF00800 Prephenate dehydratase KQ253_09270 PF01842 ACT domain KQ253_09275 PF00756 Putative esterase KQ253_09280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_09280 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_09280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_09285 PF00375 Sodium:dicarboxylate symporter family KQ253_09290 PF02885 Glycosyl transferase family, helical bundle domain KQ253_09290 PF00591 Glycosyl transferase family, a/b domain KQ253_09295 PF07023 Protein of unknown function (DUF1315) KQ253_09300 PF01513 ATP-NAD kinase KQ253_09305 PF00912 Transglycosylase KQ253_09305 PF14814 Bifunctional transglycosylase second domain KQ253_09305 PF00905 Penicillin binding protein transpeptidase domain KQ253_09315 PF00293 NUDIX domain KQ253_09325 PF00512 His Kinase A (phospho-acceptor) domain KQ253_09325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_09325 PF08521 Two-component sensor kinase N-terminal KQ253_09330 PF00486 Transcriptional regulatory protein, C terminal KQ253_09330 PF00072 Response regulator receiver domain KQ253_09340 PF00437 Type II/IV secretion system protein KQ253_09340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KQ253_09350 PF18389 TrmO C-terminal domain KQ253_09350 PF01980 tRNA-methyltransferase O KQ253_09355 PF00970 Oxidoreductase FAD-binding domain KQ253_09355 PF00175 Oxidoreductase NAD-binding domain KQ253_09360 PF02567 Phenazine biosynthesis-like protein KQ253_09365 PF00155 Aminotransferase class I and II KQ253_09365 PF00392 Bacterial regulatory proteins, gntR family KQ253_09370 PF16325 Peptidase family U32 C-terminal domain KQ253_09370 PF01136 Peptidase family U32 KQ253_09375 PF00037 4Fe-4S binding domain KQ253_09385 PF00893 Small Multidrug Resistance protein KQ253_09390 PF00005 ABC transporter KQ253_09395 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_09400 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_09405 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ253_09415 PF13533 Biotin-lipoyl like KQ253_09420 PF00873 AcrB/AcrD/AcrF family KQ253_09425 PF02321 Outer membrane efflux protein KQ253_09430 PF00464 Serine hydroxymethyltransferase KQ253_09495 PF01551 Peptidase family M23 KQ253_09495 PF01476 LysM domain KQ253_09495 PF08525 Opacity-associated protein A N-terminal motif KQ253_09505 PF08346 AntA/AntB antirepressor KQ253_09505 PF10548 P22AR C-terminal domain KQ253_09615 PF03592 Terminase small subunit KQ253_09695 PF00772 DnaB-like helicase N terminal domain KQ253_09695 PF03796 DnaB-like helicase C terminal domain KQ253_09790 PF00589 Phage integrase family KQ253_09795 PF00005 ABC transporter KQ253_09800 PF01061 ABC-2 type transporter KQ253_09805 PF14489 QueF-like protein KQ253_09805 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KQ253_09815 PF01098 Cell cycle protein KQ253_09820 PF13406 Transglycosylase SLT domain KQ253_09825 PF03330 Lytic transglycolase KQ253_09825 PF05036 Sporulation related domain KQ253_09845 PF12833 Helix-turn-helix domain KQ253_09855 PF00889 Elongation factor TS KQ253_09860 PF00318 Ribosomal protein S2 KQ253_09865 PF00557 Metallopeptidase family M24 KQ253_09875 PF07690 Major Facilitator Superfamily KQ253_09885 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_09885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ253_09890 PF04055 Radical SAM superfamily KQ253_09895 PF09317 Domain of unknown function (DUF1974) KQ253_09895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_09895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_09910 PF05221 S-adenosyl-L-homocysteine hydrolase KQ253_09910 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KQ253_09915 PF02219 Methylenetetrahydrofolate reductase KQ253_09920 PF04452 RNA methyltransferase KQ253_09925 PF00990 Diguanylate cyclase, GGDEF domain KQ253_09925 PF03707 Bacterial signalling protein N terminal repeat KQ253_09925 PF00563 EAL domain KQ253_09930 PF00390 Malic enzyme, N-terminal domain KQ253_09930 PF03949 Malic enzyme, NAD binding domain KQ253_09930 PF01515 Phosphate acetyl/butaryl transferase KQ253_09935 PF12627 Probable RNA and SrmB- binding site of polymerase A KQ253_09935 PF01743 Poly A polymerase head domain KQ253_09940 PF13180 PDZ domain KQ253_09945 PF01784 NIF3 (NGG1p interacting factor 3) KQ253_09950 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KQ253_09950 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KQ253_09985 PF01040 UbiA prenyltransferase family KQ253_09990 PF04345 Chorismate lyase KQ253_09995 PF03951 Glutamine synthetase, beta-Grasp domain KQ253_09995 PF00120 Glutamine synthetase, catalytic domain KQ253_10000 PF00854 POT family KQ253_10010 PF00117 Glutamine amidotransferase class-I KQ253_10015 PF01433 Peptidase family M1 domain KQ253_10015 PF11838 ERAP1-like C-terminal domain KQ253_10020 PF07715 TonB-dependent Receptor Plug Domain KQ253_10020 PF00593 TonB dependent receptor KQ253_10025 PF02885 Glycosyl transferase family, helical bundle domain KQ253_10025 PF00591 Glycosyl transferase family, a/b domain KQ253_10030 PF00218 Indole-3-glycerol phosphate synthase KQ253_10045 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KQ253_10045 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KQ253_10050 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_10050 PF01799 [2Fe-2S] binding domain KQ253_10055 PF01227 GTP cyclohydrolase I KQ253_10070 PF01740 STAS domain KQ253_10070 PF00916 Sulfate permease family KQ253_10075 PF00582 Universal stress protein family KQ253_10090 PF00872 Transposase, Mutator family KQ253_10110 PF00665 Integrase core domain KQ253_10125 PF00144 Beta-lactamase KQ253_10140 PF05675 Protein of unknown function (DUF817) KQ253_10145 PF01208 Uroporphyrinogen decarboxylase (URO-D) KQ253_10155 PF00425 chorismate binding enzyme KQ253_10165 PF00975 Thioesterase domain KQ253_10170 PF00005 ABC transporter KQ253_10175 PF00005 ABC transporter KQ253_10175 PF00664 ABC transporter transmembrane region KQ253_10180 PF00282 Pyridoxal-dependent decarboxylase conserved domain KQ253_10185 PF00857 Isochorismatase family KQ253_10185 PF00550 Phosphopantetheine attachment site KQ253_10190 PF00501 AMP-binding enzyme KQ253_10190 PF13193 AMP-binding enzyme C-terminal domain KQ253_10195 PF00550 Phosphopantetheine attachment site KQ253_10195 PF00501 AMP-binding enzyme KQ253_10195 PF00668 Condensation domain KQ253_10200 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KQ253_10205 PF07715 TonB-dependent Receptor Plug Domain KQ253_10205 PF00593 TonB dependent receptor KQ253_10210 PF01497 Periplasmic binding protein KQ253_10215 PF00005 ABC transporter KQ253_10220 PF01032 FecCD transport family KQ253_10225 PF01032 FecCD transport family KQ253_10230 PF00501 AMP-binding enzyme KQ253_10230 PF13193 AMP-binding enzyme C-terminal domain KQ253_10230 PF00668 Condensation domain KQ253_10230 PF00550 Phosphopantetheine attachment site KQ253_10230 PF00975 Thioesterase domain KQ253_10235 PF00501 AMP-binding enzyme KQ253_10235 PF13193 AMP-binding enzyme C-terminal domain KQ253_10235 PF00668 Condensation domain KQ253_10235 PF00550 Phosphopantetheine attachment site KQ253_10245 PF13309 HTH domain KQ253_10245 PF08348 YheO-like PAS domain KQ253_10250 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_10255 PF02678 Pirin KQ253_10255 PF17954 Quercetinase C-terminal cupin domain KQ253_10280 PF04328 Selenoprotein, putative KQ253_10285 PF02554 Carbon starvation protein CstA KQ253_10285 PF13722 5TM C-terminal transporter carbon starvation CstA KQ253_10290 PF01132 Elongation factor P (EF-P) OB domain KQ253_10290 PF08207 Elongation factor P (EF-P) KOW-like domain KQ253_10290 PF09285 Elongation factor P, C-terminal KQ253_10295 PF04055 Radical SAM superfamily KQ253_10320 PF01197 Ribosomal protein L31 KQ253_10325 PF13593 SBF-like CPA transporter family (DUF4137) KQ253_10330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ253_10335 PF07690 Major Facilitator Superfamily KQ253_10340 PF13654 AAA domain KQ253_10340 PF05362 Lon protease (S16) C-terminal proteolytic domain KQ253_10345 PF03466 LysR substrate binding domain KQ253_10345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_10350 PF01476 LysM domain KQ253_10350 PF01551 Peptidase family M23 KQ253_10355 PF01975 Survival protein SurE KQ253_10370 PF07943 Penicillin-binding protein 5, C-terminal domain KQ253_10370 PF00768 D-alanyl-D-alanine carboxypeptidase KQ253_10375 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_10380 PF13344 Haloacid dehalogenase-like hydrolase KQ253_10380 PF00293 NUDIX domain KQ253_10390 PF04356 Protein of unknown function (DUF489) KQ253_10395 PF08328 Adenylosuccinate lyase C-terminal KQ253_10395 PF00206 Lyase KQ253_10410 PF01343 Peptidase family S49 KQ253_10410 PF08496 Peptidase family S49 N-terminal KQ253_10415 PF00005 ABC transporter KQ253_10420 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_10425 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_10430 PF12849 PBP superfamily domain KQ253_10435 PF00324 Amino acid permease KQ253_10440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ253_10440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ253_10440 PF00205 Thiamine pyrophosphate enzyme, central domain KQ253_10445 PF01037 Lrp/AsnC ligand binding domain KQ253_10450 PF00171 Aldehyde dehydrogenase family KQ253_10455 PF00282 Pyridoxal-dependent decarboxylase conserved domain KQ253_10460 PF00202 Aminotransferase class-III KQ253_10470 PF17754 MftR C-terminal domain KQ253_10470 PF00440 Bacterial regulatory proteins, tetR family KQ253_10480 PF00487 Fatty acid desaturase KQ253_10485 PF00970 Oxidoreductase FAD-binding domain KQ253_10485 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_10485 PF00175 Oxidoreductase NAD-binding domain KQ253_10490 PF00440 Bacterial regulatory proteins, tetR family KQ253_10500 PF18337 RapA N-terminal Tudor like domain KQ253_10500 PF18339 RapA N-terminal Tudor like domain 1 KQ253_10500 PF00271 Helicase conserved C-terminal domain KQ253_10500 PF12137 RNA polymerase recycling family C-terminal KQ253_10500 PF00176 SNF2 family N-terminal domain KQ253_10505 PF00849 RNA pseudouridylate synthase KQ253_10515 PF00202 Aminotransferase class-III KQ253_10520 PF02581 Thiamine monophosphate synthase KQ253_10545 PF00675 Insulinase (Peptidase family M16) KQ253_10545 PF05193 Peptidase M16 inactive domain KQ253_10550 PF02567 Phenazine biosynthesis-like protein KQ253_10555 PF00375 Sodium:dicarboxylate symporter family KQ253_10560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_10560 PF03466 LysR substrate binding domain KQ253_10565 PF06779 Uncharacterised MFS-type transporter YbfB KQ253_10585 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ253_10590 PF00849 RNA pseudouridylate synthase KQ253_10595 PF03971 Monomeric isocitrate dehydrogenase KQ253_10605 PF07943 Penicillin-binding protein 5, C-terminal domain KQ253_10605 PF00768 D-alanyl-D-alanine carboxypeptidase KQ253_10610 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_10615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ253_10620 PF00875 DNA photolyase KQ253_10620 PF03441 FAD binding domain of DNA photolyase KQ253_10650 PF02350 UDP-N-acetylglucosamine 2-epimerase KQ253_10665 PF03060 Nitronate monooxygenase KQ253_10670 PF01207 Dihydrouridine synthase (Dus) KQ253_10675 PF07759 Protein of unknown function (DUF1615) KQ253_10685 PF00696 Amino acid kinase family KQ253_10685 PF01472 PUA domain KQ253_10690 PF01926 50S ribosome-binding GTPase KQ253_10690 PF01018 GTP1/OBG KQ253_10705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KQ253_10705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KQ253_10710 PF00892 EamA-like transporter family KQ253_10720 PF17757 UvrB interaction domain KQ253_10720 PF12344 Ultra-violet resistance protein B KQ253_10720 PF02151 UvrB/uvrC motif KQ253_10720 PF00271 Helicase conserved C-terminal domain KQ253_10720 PF04851 Type III restriction enzyme, res subunit KQ253_10730 PF00990 Diguanylate cyclase, GGDEF domain KQ253_10730 PF17151 Periplasmic sensor domain KQ253_10740 PF00155 Aminotransferase class I and II KQ253_10770 PF00106 short chain dehydrogenase KQ253_10775 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KQ253_10780 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KQ253_10785 PF02565 Recombination protein O C terminal KQ253_10785 PF11967 Recombination protein O N terminal KQ253_10795 PF07650 KH domain KQ253_10795 PF01926 50S ribosome-binding GTPase KQ253_10800 PF00035 Double-stranded RNA binding motif KQ253_10800 PF14622 Ribonuclease-III-like KQ253_10810 PF10502 Signal peptidase, peptidase S26 KQ253_10815 PF00679 Elongation factor G C-terminus KQ253_10815 PF00009 Elongation factor Tu GTP binding domain KQ253_10815 PF03144 Elongation factor Tu domain 2 KQ253_10815 PF06421 GTP-binding protein LepA C-terminus KQ253_10825 PF13180 PDZ domain KQ253_10830 PF00890 FAD binding domain KQ253_10830 PF02910 Fumarate reductase flavoprotein C-term KQ253_10840 PF02223 Thymidylate kinase KQ253_10845 PF02618 YceG-like family KQ253_10850 PF01063 Amino-transferase class IV KQ253_10865 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_10870 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_10875 PF12857 TOBE-like domain KQ253_10875 PF00005 ABC transporter KQ253_10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_10880 PF03466 LysR substrate binding domain KQ253_10890 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_10890 PF14602 Hexapeptide repeat of succinyl-transferase KQ253_10890 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KQ253_10900 PF06508 Queuosine biosynthesis protein QueC KQ253_10915 PF00578 AhpC/TSA family KQ253_10925 PF01467 Cytidylyltransferase-like KQ253_10925 PF00293 NUDIX domain KQ253_10930 PF00378 Enoyl-CoA hydratase/isomerase KQ253_10935 PF01784 NIF3 (NGG1p interacting factor 3) KQ253_10945 PF07690 Major Facilitator Superfamily KQ253_10950 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KQ253_10950 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KQ253_10950 PF02769 AIR synthase related protein, C-terminal domain KQ253_10955 PF01966 HD domain KQ253_10960 PF07499 RuvA, C-terminal domain KQ253_10960 PF01330 RuvA N terminal domain KQ253_10965 PF17864 RuvB AAA lid domain KQ253_10965 PF05491 RuvB C-terminal winged helix domain KQ253_10965 PF05496 Holliday junction DNA helicase RuvB P-loop domain KQ253_10970 PF07687 Peptidase dimerisation domain KQ253_10970 PF01546 Peptidase family M20/M25/M40 KQ253_10975 PF03061 Thioesterase superfamily KQ253_10980 PF01618 MotA/TolQ/ExbB proton channel family KQ253_10985 PF02472 Biopolymer transport protein ExbD/TolR KQ253_10995 PF07676 WD40-like Beta Propeller Repeat KQ253_10995 PF04052 TolB amino-terminal domain KQ253_11000 PF00691 OmpA family KQ253_11010 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KQ253_11015 PF00588 SpoU rRNA Methylase family KQ253_11015 PF08032 RNA 2'-O ribose methyltransferase substrate binding KQ253_11045 PF00308 Bacterial dnaA protein KQ253_11045 PF08299 Bacterial dnaA protein helix-turn-helix KQ253_11045 PF11638 DnaA N-terminal domain KQ253_11050 PF01594 AI-2E family transporter KQ253_11055 PF00586 AIR synthase related protein, N-terminal domain KQ253_11055 PF02769 AIR synthase related protein, C-terminal domain KQ253_11060 PF00551 Formyl transferase KQ253_11065 PF12697 Alpha/beta hydrolase family KQ253_11070 PF06965 Na+/H+ antiporter 1 KQ253_11070 PF01343 Peptidase family S49 KQ253_11080 PF03772 Competence protein KQ253_11080 PF00753 Metallo-beta-lactamase superfamily KQ253_11080 PF13567 Domain of unknown function (DUF4131) KQ253_11085 PF00005 ABC transporter KQ253_11090 PF02687 FtsX-like permease family KQ253_11090 PF12704 MacB-like periplasmic core domain KQ253_11100 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KQ253_11115 PF00266 Aminotransferase class-V KQ253_11125 PF13533 Biotin-lipoyl like KQ253_11145 PF00535 Glycosyl transferase family 2 KQ253_11160 PF03989 DNA gyrase C-terminal domain, beta-propeller KQ253_11160 PF00521 DNA gyrase/topoisomerase IV, subunit A KQ253_11165 PF00766 Electron transfer flavoprotein FAD-binding domain KQ253_11165 PF01012 Electron transfer flavoprotein domain KQ253_11170 PF01012 Electron transfer flavoprotein domain KQ253_11175 PF00589 Phage integrase family KQ253_11175 PF02899 Phage integrase, N-terminal SAM-like domain KQ253_11180 PF01810 LysE type translocator KQ253_11185 PF01678 Diaminopimelate epimerase KQ253_11190 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KQ253_11190 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KQ253_11200 PF00324 Amino acid permease KQ253_11205 PF18073 Rubredoxin metal binding domain KQ253_11215 PF00152 tRNA synthetases class II (D, K and N) KQ253_11220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ253_11220 PF11890 Domain of unknown function (DUF3410) KQ253_11220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ253_11225 PF06803 Protein of unknown function (DUF1232) KQ253_11230 PF02634 FdhD/NarQ family KQ253_11235 PF00384 Molybdopterin oxidoreductase KQ253_11240 PF02595 Glycerate kinase family KQ253_11255 PF00881 Nitroreductase family KQ253_11320 PF00501 AMP-binding enzyme KQ253_11320 PF00668 Condensation domain KQ253_11320 PF00550 Phosphopantetheine attachment site KQ253_11320 PF13193 AMP-binding enzyme C-terminal domain KQ253_11320 PF00975 Thioesterase domain KQ253_11335 PF03449 Transcription elongation factor, N-terminal KQ253_11335 PF01272 Transcription elongation factor, GreA/GreB, C-term KQ253_11340 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ253_11340 PF01464 Transglycosylase SLT domain KQ253_11350 PF01171 PP-loop family KQ253_11355 PF01464 Transglycosylase SLT domain KQ253_11360 PF01435 Peptidase family M48 KQ253_11370 PF00873 AcrB/AcrD/AcrF family KQ253_11375 PF03009 Glycerophosphoryl diester phosphodiesterase family KQ253_11395 PF01219 Prokaryotic diacylglycerol kinase KQ253_11400 PF00118 TCP-1/cpn60 chaperonin family KQ253_11405 PF00166 Chaperonin 10 Kd subunit KQ253_11415 PF00149 Calcineurin-like phosphoesterase KQ253_11420 PF00781 Diacylglycerol kinase catalytic domain KQ253_11425 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KQ253_11425 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KQ253_11430 PF01266 FAD dependent oxidoreductase KQ253_11430 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KQ253_11435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KQ253_11435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KQ253_11440 PF00083 Sugar (and other) transporter KQ253_11455 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KQ253_11455 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KQ253_11470 PF09423 PhoD-like phosphatase KQ253_11470 PF16655 PhoD-like phosphatase, N-terminal domain KQ253_11490 PF00809 Pterin binding enzyme KQ253_11495 PF01434 Peptidase family M41 KQ253_11495 PF00004 ATPase family associated with various cellular activities (AAA) KQ253_11495 PF17862 AAA+ lid domain KQ253_11495 PF06480 FtsH Extracellular KQ253_11500 PF01728 FtsJ-like methyltransferase KQ253_11505 PF01985 CRS1 / YhbY (CRM) domain KQ253_11520 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KQ253_11520 PF00117 Glutamine amidotransferase class-I KQ253_11525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ253_11525 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KQ253_11525 PF02142 MGS-like domain KQ253_11530 PF01272 Transcription elongation factor, GreA/GreB, C-term KQ253_11530 PF03449 Transcription elongation factor, N-terminal KQ253_11535 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_11540 PF00582 Universal stress protein family KQ253_11545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ253_11555 PF09587 Bacterial capsule synthesis protein PGA_cap KQ253_11570 PF00665 Integrase core domain KQ253_11570 PF13936 Helix-turn-helix domain KQ253_11575 PF00999 Sodium/hydrogen exchanger family KQ253_11580 PF04228 Putative neutral zinc metallopeptidase KQ253_11585 PF05661 Protein of unknown function (DUF808) KQ253_11590 PF00579 tRNA synthetases class I (W and Y) KQ253_11595 PF02629 CoA binding domain KQ253_11595 PF00549 CoA-ligase KQ253_11600 PF08442 ATP-grasp domain KQ253_11600 PF00549 CoA-ligase KQ253_11605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ253_11605 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_11610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ253_11610 PF00364 Biotin-requiring enzyme KQ253_11610 PF02817 e3 binding domain KQ253_11615 PF02779 Transketolase, pyrimidine binding domain KQ253_11615 PF16078 2-oxoglutarate dehydrogenase N-terminus KQ253_11615 PF00676 Dehydrogenase E1 component KQ253_11615 PF16870 2-oxoglutarate dehydrogenase C-terminal KQ253_11630 PF13085 2Fe-2S iron-sulfur cluster binding domain KQ253_11635 PF00890 FAD binding domain KQ253_11635 PF02910 Fumarate reductase flavoprotein C-term KQ253_11640 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KQ253_11645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KQ253_11650 PF00285 Citrate synthase, C-terminal domain KQ253_11660 PF00581 Rhodanese-like domain KQ253_11660 PF17773 UPF0176 acylphosphatase like domain KQ253_11675 PF04539 Sigma-70 region 3 KQ253_11675 PF04545 Sigma-70, region 4 KQ253_11675 PF03979 Sigma-70 factor, region 1.1 KQ253_11675 PF00140 Sigma-70 factor, region 1.2 KQ253_11675 PF04546 Sigma-70, non-essential region KQ253_11675 PF04542 Sigma-70 region 2 KQ253_11680 PF04359 Protein of unknown function (DUF493) KQ253_11685 PF03099 Biotin/lipoate A/B protein ligase family KQ253_11695 PF00465 Iron-containing alcohol dehydrogenase KQ253_11700 PF13520 Amino acid permease KQ253_11705 PF03358 NADPH-dependent FMN reductase KQ253_11710 PF01638 HxlR-like helix-turn-helix KQ253_11715 PF00588 SpoU rRNA Methylase family KQ253_11720 PF14824 Sirohaem biosynthesis protein central KQ253_11720 PF10414 Sirohaem synthase dimerisation region KQ253_11720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KQ253_11725 PF02403 Seryl-tRNA synthetase N-terminal domain KQ253_11725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ253_11735 PF03548 Outer membrane lipoprotein carrier protein LolA KQ253_11740 PF01016 Ribosomal L27 protein KQ253_11745 PF00829 Ribosomal prokaryotic L21 protein KQ253_11755 PF00348 Polyprenyl synthetase KQ253_11760 PF01406 tRNA synthetases class I (C) catalytic domain KQ253_11760 PF09190 DALR domain KQ253_11765 PF01569 PAP2 superfamily KQ253_11770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ253_11770 PF00529 HlyD membrane-fusion protein of T1SS KQ253_11775 PF00873 AcrB/AcrD/AcrF family KQ253_11780 PF02321 Outer membrane efflux protein KQ253_11785 PF01906 Putative heavy-metal-binding KQ253_11790 PF01906 Putative heavy-metal-binding KQ253_11810 PF08264 Anticodon-binding domain of tRNA KQ253_11810 PF00133 tRNA synthetases class I (I, L, M and V) KQ253_11810 PF10458 Valyl tRNA synthetase tRNA binding arm KQ253_11830 PF00665 Integrase core domain KQ253_11830 PF13936 Helix-turn-helix domain KQ253_11840 PF03466 LysR substrate binding domain KQ253_11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_11845 PF00909 Ammonium Transporter Family KQ253_11855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_11855 PF00512 His Kinase A (phospho-acceptor) domain KQ253_11855 PF08521 Two-component sensor kinase N-terminal KQ253_11860 PF00072 Response regulator receiver domain KQ253_11860 PF00486 Transcriptional regulatory protein, C terminal KQ253_11865 PF08019 Phosphoethanolamine transferase EptA/EptB KQ253_11865 PF00884 Sulfatase KQ253_11885 PF01734 Patatin-like phospholipase KQ253_11895 PF01145 SPFH domain / Band 7 family KQ253_11900 PF04237 YjbR KQ253_11905 PF00348 Polyprenyl synthetase KQ253_11910 PF04303 PrpF protein KQ253_11915 PF00324 Amino acid permease KQ253_11930 PF01965 DJ-1/PfpI family KQ253_11935 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ253_11935 PF14765 Polyketide synthase dehydratase KQ253_11935 PF16197 Ketoacyl-synthetase C-terminal extension KQ253_11935 PF09277 Erythronolide synthase, docking KQ253_11935 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ253_11935 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_11935 PF00698 Acyl transferase domain KQ253_11935 PF08659 KR domain KQ253_11935 PF08990 Erythronolide synthase docking KQ253_11935 PF00550 Phosphopantetheine attachment site KQ253_11940 PF06719 AraC-type transcriptional regulator N-terminus KQ253_11940 PF12833 Helix-turn-helix domain KQ253_11945 PF02673 Bacitracin resistance protein BacA KQ253_11965 PF02525 Flavodoxin-like fold KQ253_11980 PF01507 Phosphoadenosine phosphosulfate reductase family KQ253_11985 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KQ253_11985 PF06974 Protein of unknown function (DUF1298) KQ253_11995 PF10150 Ribonuclease E/G family KQ253_11995 PF00575 S1 RNA binding domain KQ253_12000 PF02545 Maf-like protein KQ253_12005 PF04093 rod shape-determining protein MreD KQ253_12010 PF04085 rod shape-determining protein MreC KQ253_12020 PF02686 Glu-tRNAGln amidotransferase C subunit KQ253_12025 PF01425 Amidase KQ253_12030 PF02934 GatB/GatE catalytic domain KQ253_12030 PF02637 GatB domain KQ253_12055 PF05649 Peptidase family M13 KQ253_12055 PF01431 Peptidase family M13 KQ253_12060 PF05992 SbmA/BacA-like family KQ253_12065 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_12065 PF13291 ACT domain KQ253_12070 PF01734 Patatin-like phospholipase KQ253_12075 PF01235 Sodium:alanine symporter family KQ253_12090 PF00881 Nitroreductase family KQ253_12095 PF07690 Major Facilitator Superfamily KQ253_12100 PF12805 FUSC-like inner membrane protein yccS KQ253_12110 PF00175 Oxidoreductase NAD-binding domain KQ253_12110 PF00258 Flavodoxin KQ253_12110 PF00667 FAD binding domain KQ253_12150 PF03734 L,D-transpeptidase catalytic domain KQ253_12150 PF17969 L,D-transpeptidase C-terminal domain KQ253_12155 PF04304 Protein of unknown function (DUF454) KQ253_12165 PF08085 Entericidin EcnA/B family KQ253_12170 PF01546 Peptidase family M20/M25/M40 KQ253_12170 PF07687 Peptidase dimerisation domain KQ253_12180 PF01584 CheW-like domain KQ253_12180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_12180 PF01627 Hpt domain KQ253_12180 PF00072 Response regulator receiver domain KQ253_12185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KQ253_12185 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KQ253_12190 PF01584 CheW-like domain KQ253_12195 PF00072 Response regulator receiver domain KQ253_12200 PF00072 Response regulator receiver domain KQ253_12215 PF00873 AcrB/AcrD/AcrF family KQ253_12220 PF04073 Aminoacyl-tRNA editing domain KQ253_12220 PF03129 Anticodon binding domain KQ253_12220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ253_12225 PF07411 Domain of unknown function (DUF1508) KQ253_12230 PF03831 PhnA domain KQ253_12230 PF08274 PhnA Zinc-Ribbon KQ253_12235 PF04343 Protein of unknown function, DUF488 KQ253_12245 PF01571 Aminomethyltransferase folate-binding domain KQ253_12250 PF13098 Thioredoxin-like domain KQ253_12250 PF10411 Disulfide bond isomerase protein N-terminus KQ253_12260 PF03547 Membrane transport protein KQ253_12265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ253_12270 PF07715 TonB-dependent Receptor Plug Domain KQ253_12270 PF00593 TonB dependent receptor KQ253_12275 PF02245 Methylpurine-DNA glycosylase (MPG) KQ253_12280 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KQ253_12280 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KQ253_12280 PF06827 Zinc finger found in FPG and IleRS KQ253_12295 PF01741 Large-conductance mechanosensitive channel, MscL KQ253_12300 PF00679 Elongation factor G C-terminus KQ253_12300 PF00009 Elongation factor Tu GTP binding domain KQ253_12300 PF03144 Elongation factor Tu domain 2 KQ253_12305 PF00860 Permease family KQ253_12310 PF08468 Methyltransferase small domain N-terminal KQ253_12310 PF05175 Methyltransferase small domain KQ253_12315 PF00324 Amino acid permease KQ253_12320 PF01139 tRNA-splicing ligase RtcB KQ253_12330 PF00691 OmpA family KQ253_12330 PF13505 Outer membrane protein beta-barrel domain KQ253_12340 PF02803 Thiolase, C-terminal domain KQ253_12340 PF00108 Thiolase, N-terminal domain KQ253_12350 PF00893 Small Multidrug Resistance protein KQ253_12360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ253_12360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ253_12365 PF01011 PQQ enzyme repeat KQ253_12370 PF04966 Carbohydrate-selective porin, OprB family KQ253_12375 PF02515 CoA-transferase family III KQ253_12380 PF12833 Helix-turn-helix domain KQ253_12380 PF02311 AraC-like ligand binding domain KQ253_12385 PF00108 Thiolase, N-terminal domain KQ253_12385 PF02803 Thiolase, C-terminal domain KQ253_12390 PF00378 Enoyl-CoA hydratase/isomerase KQ253_12390 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ253_12390 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ253_12415 PF03006 Haemolysin-III related KQ253_12420 PF07690 Major Facilitator Superfamily KQ253_12420 PF00083 Sugar (and other) transporter KQ253_12430 PF02810 SEC-C motif KQ253_12430 PF07517 SecA DEAD-like domain KQ253_12430 PF01043 SecA preprotein cross-linking domain KQ253_12430 PF07516 SecA Wing and Scaffold domain KQ253_12435 PF10417 C-terminal domain of 1-Cys peroxiredoxin KQ253_12435 PF00578 AhpC/TSA family KQ253_12440 PF00753 Metallo-beta-lactamase superfamily KQ253_12455 PF08245 Mur ligase middle domain KQ253_12455 PF02875 Mur ligase family, glutamate ligase domain KQ253_12460 PF01039 Carboxyl transferase domain KQ253_12465 PF00290 Tryptophan synthase alpha chain KQ253_12490 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_12495 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KQ253_12500 PF07715 TonB-dependent Receptor Plug Domain KQ253_12500 PF00593 TonB dependent receptor KQ253_12505 PF01923 Cobalamin adenosyltransferase KQ253_12510 PF03009 Glycerophosphoryl diester phosphodiesterase family KQ253_12525 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KQ253_12530 PF00072 Response regulator receiver domain KQ253_12530 PF00486 Transcriptional regulatory protein, C terminal KQ253_12535 PF00672 HAMP domain KQ253_12535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_12535 PF00512 His Kinase A (phospho-acceptor) domain KQ253_12545 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_12545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_12545 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ253_12545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_12550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_12550 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ253_12550 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_12550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_12555 PF06146 Phosphate-starvation-inducible E KQ253_12575 PF00593 TonB dependent receptor KQ253_12575 PF07715 TonB-dependent Receptor Plug Domain KQ253_12585 PF01336 OB-fold nucleic acid binding domain KQ253_12585 PF02938 GAD domain KQ253_12585 PF00152 tRNA synthetases class II (D, K and N) KQ253_12590 PF11380 Stealth protein CR2, conserved region 2 KQ253_12590 PF17101 Stealth protein CR1, conserved region 1 KQ253_12590 PF17102 Stealth protein CR3, conserved region 3 KQ253_12600 PF13737 Transposase DDE domain KQ253_12625 PF13439 Glycosyltransferase Family 4 KQ253_12625 PF00534 Glycosyl transferases group 1 KQ253_12630 PF00535 Glycosyl transferase family 2 KQ253_12635 PF01522 Polysaccharide deacetylase KQ253_12650 PF01063 Amino-transferase class IV KQ253_12655 PF08335 GlnD PII-uridylyltransferase KQ253_12655 PF03710 Glutamate-ammonia ligase adenylyltransferase KQ253_12660 PF00672 HAMP domain KQ253_12660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_12660 PF01627 Hpt domain KQ253_12660 PF00072 Response regulator receiver domain KQ253_12660 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KQ253_12660 PF00512 His Kinase A (phospho-acceptor) domain KQ253_12675 PF04245 37-kD nucleoid-associated bacterial protein KQ253_12690 PF02547 Queuosine biosynthesis protein KQ253_12705 PF01702 Queuine tRNA-ribosyltransferase KQ253_12710 PF02699 Preprotein translocase subunit KQ253_12715 PF13721 SecD export protein N-terminal TM region KQ253_12715 PF02355 Protein export membrane protein KQ253_12715 PF07549 SecD/SecF GG Motif KQ253_12720 PF02355 Protein export membrane protein KQ253_12720 PF07549 SecD/SecF GG Motif KQ253_12725 PF02441 Flavoprotein KQ253_12725 PF04127 DNA / pantothenate metabolism flavoprotein KQ253_12730 PF04002 RadC-like JAB domain KQ253_12735 PF01062 Bestrophin, RFP-TM, chloride channel KQ253_12740 PF02811 PHP domain KQ253_12745 PF04279 Intracellular septation protein A KQ253_12750 PF03795 YCII-related domain KQ253_12760 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KQ253_12760 PF01266 FAD dependent oxidoreductase KQ253_12770 PF04461 Protein of unknown function (DUF520) KQ253_12780 PF03061 Thioesterase superfamily KQ253_12785 PF00085 Thioredoxin KQ253_12790 PF00561 alpha/beta hydrolase fold KQ253_12795 PF04273 Putative phosphatase (DUF442) KQ253_12795 PF00753 Metallo-beta-lactamase superfamily KQ253_12805 PF13737 Transposase DDE domain KQ253_12810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ253_12810 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_12845 PF17152 Periplasmic sensor domain KQ253_12845 PF00990 Diguanylate cyclase, GGDEF domain KQ253_12850 PF00691 OmpA family KQ253_12850 PF01389 OmpA-like transmembrane domain KQ253_12855 PF00149 Calcineurin-like phosphoesterase KQ253_12855 PF10518 TAT (twin-arginine translocation) pathway signal sequence KQ253_12860 PF13091 PLD-like domain KQ253_12870 PF01926 50S ribosome-binding GTPase KQ253_12870 PF16360 GTP-binding GTPase Middle Region KQ253_12870 PF13167 GTP-binding GTPase N-terminal KQ253_12890 PF00149 Calcineurin-like phosphoesterase KQ253_12895 PF00398 Ribosomal RNA adenine dimethylase KQ253_12900 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KQ253_12905 PF00572 Ribosomal protein L13 KQ253_12910 PF00380 Ribosomal protein S9/S16 KQ253_12915 PF13417 Glutathione S-transferase, N-terminal domain KQ253_12915 PF00043 Glutathione S-transferase, C-terminal domain KQ253_12920 PF04386 Stringent starvation protein B KQ253_12930 PF00364 Biotin-requiring enzyme KQ253_12930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ253_12930 PF02785 Biotin carboxylase C-terminal domain KQ253_12930 PF00289 Biotin carboxylase, N-terminal domain KQ253_12935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ253_12935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ253_12935 PF00378 Enoyl-CoA hydratase/isomerase KQ253_12940 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_12940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_12940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_12945 PF01039 Carboxyl transferase domain KQ253_12960 PF17932 Tetracyclin repressor-like, C-terminal domain KQ253_12960 PF00440 Bacterial regulatory proteins, tetR family KQ253_12965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_12965 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_12965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_13010 PF01066 CDP-alcohol phosphatidyltransferase KQ253_13015 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KQ253_13035 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KQ253_13035 PF00056 lactate/malate dehydrogenase, NAD binding domain KQ253_13045 PF01551 Peptidase family M23 KQ253_13045 PF10145 Phage-related minor tail protein KQ253_13045 PF01464 Transglycosylase SLT domain KQ253_13050 PF01938 TRAM domain KQ253_13050 PF00919 Uncharacterized protein family UPF0004 KQ253_13050 PF04055 Radical SAM superfamily KQ253_13055 PF02562 PhoH-like protein KQ253_13060 PF02130 Uncharacterized protein family UPF0054 KQ253_13085 PF03358 NADPH-dependent FMN reductase KQ253_13090 PF03631 Virulence factor BrkB KQ253_13095 PF00892 EamA-like transporter family KQ253_13105 PF01557 Fumarylacetoacetate (FAA) hydrolase family KQ253_13150 PF08461 Ribonuclease R winged-helix domain KQ253_13150 PF17876 Cold shock domain KQ253_13150 PF00575 S1 RNA binding domain KQ253_13150 PF00773 RNB domain KQ253_13150 PF08206 Ribonuclease B OB domain KQ253_13155 PF01432 Peptidase family M3 KQ253_13160 PF09526 Probable metal-binding protein (DUF2387) KQ253_13190 PF03937 Flavinator of succinate dehydrogenase KQ253_13195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_13195 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_13195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_13200 PF00743 Flavin-binding monooxygenase-like KQ253_13205 PF01196 Ribosomal protein L17 KQ253_13210 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KQ253_13210 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KQ253_13210 PF01000 RNA polymerase Rpb3/RpoA insert domain KQ253_13215 PF01479 S4 domain KQ253_13215 PF00163 Ribosomal protein S4/S9 N-terminal domain KQ253_13220 PF00411 Ribosomal protein S11 KQ253_13225 PF00416 Ribosomal protein S13/S18 KQ253_13230 PF00444 Ribosomal protein L36 KQ253_13235 PF00344 SecY translocase KQ253_13240 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KQ253_13245 PF00327 Ribosomal protein L30p/L7e KQ253_13250 PF00333 Ribosomal protein S5, N-terminal domain KQ253_13250 PF03719 Ribosomal protein S5, C-terminal domain KQ253_13255 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KQ253_13260 PF00347 Ribosomal protein L6 KQ253_13265 PF00410 Ribosomal protein S8 KQ253_13270 PF00253 Ribosomal protein S14p/S29e KQ253_13275 PF00673 ribosomal L5P family C-terminus KQ253_13275 PF00281 Ribosomal protein L5 KQ253_13280 PF00467 KOW motif KQ253_13280 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KQ253_13285 PF00238 Ribosomal protein L14p/L23e KQ253_13290 PF00366 Ribosomal protein S17 KQ253_13295 PF00831 Ribosomal L29 protein KQ253_13300 PF00252 Ribosomal protein L16p/L10e KQ253_13305 PF00189 Ribosomal protein S3, C-terminal domain KQ253_13305 PF07650 KH domain KQ253_13310 PF00237 Ribosomal protein L22p/L17e KQ253_13315 PF00203 Ribosomal protein S19 KQ253_13320 PF03947 Ribosomal Proteins L2, C-terminal domain KQ253_13320 PF00181 Ribosomal Proteins L2, RNA binding domain KQ253_13325 PF00276 Ribosomal protein L23 KQ253_13330 PF00573 Ribosomal protein L4/L1 family KQ253_13335 PF00297 Ribosomal protein L3 KQ253_13340 PF00338 Ribosomal protein S10p/S20e KQ253_13345 PF00117 Glutamine amidotransferase class-I KQ253_13350 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ253_13355 PF05872 Bacterial protein of unknown function (DUF853) KQ253_13360 PF00970 Oxidoreductase FAD-binding domain KQ253_13360 PF00042 Globin KQ253_13360 PF00175 Oxidoreductase NAD-binding domain KQ253_13365 PF02082 Transcriptional regulator KQ253_13370 PF01926 50S ribosome-binding GTPase KQ253_13380 PF00375 Sodium:dicarboxylate symporter family KQ253_13390 PF01553 Acyltransferase KQ253_13405 PF17191 RecG wedge domain KQ253_13405 PF00270 DEAD/DEAH box helicase KQ253_13405 PF00271 Helicase conserved C-terminal domain KQ253_13410 PF00156 Phosphoribosyl transferase domain KQ253_13415 PF00293 NUDIX domain KQ253_13420 PF03641 Possible lysine decarboxylase KQ253_13425 PF01544 CorA-like Mg2+ transporter protein KQ253_13435 PF05494 MlaC protein KQ253_13445 PF02405 Permease MlaE KQ253_13450 PF00005 ABC transporter KQ253_13460 PF03880 DbpA RNA binding domain KQ253_13460 PF00270 DEAD/DEAH box helicase KQ253_13460 PF12343 Cold shock protein DEAD box A KQ253_13460 PF00271 Helicase conserved C-terminal domain KQ253_13465 PF00459 Inositol monophosphatase family KQ253_13470 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KQ253_13470 PF02779 Transketolase, pyrimidine binding domain KQ253_13470 PF02780 Transketolase, C-terminal domain KQ253_13475 PF00925 GTP cyclohydrolase II KQ253_13480 PF01218 Coproporphyrinogen III oxidase KQ253_13485 PF08501 Shikimate dehydrogenase substrate binding domain KQ253_13485 PF01488 Shikimate / quinate 5-dehydrogenase KQ253_13485 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KQ253_13495 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_13495 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ253_13495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_13495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_13505 PF04024 PspC domain KQ253_13510 PF00571 CBS domain KQ253_13535 PF02091 Glycyl-tRNA synthetase alpha subunit KQ253_13540 PF05746 DALR anticodon binding domain KQ253_13540 PF02092 Glycyl-tRNA synthetase beta subunit KQ253_13545 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system KQ253_13565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_13565 PF03466 LysR substrate binding domain KQ253_13580 PF05922 Peptidase inhibitor I9 KQ253_13580 PF00082 Subtilase family KQ253_13595 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KQ253_13600 PF04996 Succinylarginine dihydrolase KQ253_13605 PF00171 Aldehyde dehydrogenase family KQ253_13610 PF04958 Arginine N-succinyltransferase beta subunit KQ253_13615 PF00202 Aminotransferase class-III KQ253_13620 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KQ253_13620 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KQ253_13625 PF00324 Amino acid permease KQ253_13635 PF08241 Methyltransferase domain KQ253_13655 PF13614 AAA domain KQ253_13660 PF01594 AI-2E family transporter KQ253_13665 PF00080 Copper/zinc superoxide dismutase (SODC) KQ253_13670 PF12805 FUSC-like inner membrane protein yccS KQ253_13675 PF07690 Major Facilitator Superfamily KQ253_13685 PF02525 Flavodoxin-like fold KQ253_13690 PF03992 Antibiotic biosynthesis monooxygenase KQ253_13705 PF02913 FAD linked oxidases, C-terminal domain KQ253_13705 PF01565 FAD binding domain KQ253_13710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ253_13710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ253_13715 PF00892 EamA-like transporter family KQ253_13720 PF00892 EamA-like transporter family KQ253_13730 PF01925 Sulfite exporter TauE/SafE KQ253_13735 PF16198 tRNA pseudouridylate synthase B C-terminal domain KQ253_13735 PF09157 Pseudouridine synthase II TruB, C-terminal KQ253_13735 PF01509 TruB family pseudouridylate synthase (N terminal domain) KQ253_13740 PF03280 Proteobacterial lipase chaperone protein KQ253_13745 PF00561 alpha/beta hydrolase fold KQ253_13750 PF01245 Ribosomal protein L19 KQ253_13755 PF01746 tRNA (Guanine-1)-methyltransferase KQ253_13760 PF05239 PRC-barrel domain KQ253_13760 PF01782 RimM N-terminal domain KQ253_13765 PF00886 Ribosomal protein S16 KQ253_13805 PF02401 LytB protein KQ253_13810 PF00625 Guanylate kinase KQ253_13815 PF01192 RNA polymerase Rpb6 KQ253_13825 PF02824 TGS domain KQ253_13825 PF13291 ACT domain KQ253_13825 PF04607 Region found in RelA / SpoT proteins KQ253_13830 PF01042 Endoribonuclease L-PSP KQ253_13835 PF04324 BFD-like [2Fe-2S] binding domain KQ253_13840 PF00210 Ferritin-like domain KQ253_13845 PF15864 Protein glycosylation ligase KQ253_13845 PF04932 O-Antigen ligase KQ253_13845 PF11846 Virulence factor membrane-bound polymerase, C-terminal KQ253_13855 PF07963 Prokaryotic N-terminal methylation motif KQ253_13855 PF00114 Pilin (bacterial filament) KQ253_13865 PF04536 TPM domain KQ253_13870 PF04011 LemA family KQ253_13880 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KQ253_13880 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_13885 PF01493 GXGXG motif KQ253_13885 PF00310 Glutamine amidotransferases class-II KQ253_13885 PF04898 Glutamate synthase central domain KQ253_13885 PF01645 Conserved region in glutamate synthase KQ253_13895 PF01761 3-dehydroquinate synthase KQ253_13900 PF01202 Shikimate kinase KQ253_13905 PF11741 AMIN domain KQ253_13905 PF03958 Bacterial type II/III secretion system short domain KQ253_13905 PF07660 Secretin and TonB N terminus short domain KQ253_13905 PF00263 Bacterial type II and III secretion system protein KQ253_13915 PF04350 Pilus assembly protein, PilO KQ253_13920 PF05137 Fimbrial assembly protein (PilN) KQ253_13925 PF11104 Type IV pilus assembly protein PilM; KQ253_13930 PF17092 Penicillin-binding protein OB-like domain KQ253_13930 PF00905 Penicillin binding protein transpeptidase domain KQ253_13930 PF00912 Transglycosylase KQ253_13935 PF13847 Methyltransferase domain KQ253_13945 PF00953 Glycosyl transferase family 4 KQ253_13950 PF01225 Mur ligase family, catalytic domain KQ253_13950 PF02875 Mur ligase family, glutamate ligase domain KQ253_13950 PF08245 Mur ligase middle domain KQ253_13955 PF01225 Mur ligase family, catalytic domain KQ253_13955 PF02875 Mur ligase family, glutamate ligase domain KQ253_13955 PF08245 Mur ligase middle domain KQ253_13960 PF03717 Penicillin-binding Protein dimerisation domain KQ253_13960 PF00905 Penicillin binding protein transpeptidase domain KQ253_13970 PF01795 MraW methylase family KQ253_13985 PF00905 Penicillin binding protein transpeptidase domain KQ253_14000 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ253_14015 PF00324 Amino acid permease KQ253_14045 PF01545 Cation efflux family KQ253_14050 PF00873 AcrB/AcrD/AcrF family KQ253_14055 PF00529 HlyD membrane-fusion protein of T1SS KQ253_14055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ253_14075 PF04191 Phospholipid methyltransferase KQ253_14100 PF00005 ABC transporter KQ253_14100 PF12848 ABC transporter KQ253_14105 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ253_14110 PF00106 short chain dehydrogenase KQ253_14115 PF00916 Sulfate permease family KQ253_14115 PF01740 STAS domain KQ253_14120 PF17674 HHH domain KQ253_14120 PF00575 S1 RNA binding domain KQ253_14120 PF09371 Tex-like protein N-terminal domain KQ253_14120 PF16921 Tex protein YqgF-like domain KQ253_14125 PF00486 Transcriptional regulatory protein, C terminal KQ253_14125 PF00072 Response regulator receiver domain KQ253_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_14130 PF00512 His Kinase A (phospho-acceptor) domain KQ253_14130 PF00672 HAMP domain KQ253_14140 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KQ253_14140 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KQ253_14145 PF00583 Acetyltransferase (GNAT) family KQ253_14165 PF00475 Imidazoleglycerol-phosphate dehydratase KQ253_14170 PF00117 Glutamine amidotransferase class-I KQ253_14185 PF00977 Histidine biosynthesis protein KQ253_14200 PF03992 Antibiotic biosynthesis monooxygenase KQ253_14215 PF01636 Phosphotransferase enzyme family KQ253_14220 PF00977 Histidine biosynthesis protein KQ253_14235 PF00230 Major intrinsic protein KQ253_14260 PF02705 K+ potassium transporter KQ253_14280 PF00809 Pterin binding enzyme KQ253_14285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ253_14285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ253_14285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ253_14285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ253_14295 PF13610 DDE domain KQ253_14305 PF01443 Viral (Superfamily 1) RNA helicase KQ253_14305 PF17841 BID domain of Bartonella effector protein (Bep) KQ253_14305 PF03389 MobA/MobL family KQ253_14325 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase KQ253_14330 PF01636 Phosphotransferase enzyme family KQ253_14345 PF02525 Flavodoxin-like fold KQ253_14350 PF01638 HxlR-like helix-turn-helix KQ253_14365 PF13936 Helix-turn-helix domain KQ253_14365 PF00665 Integrase core domain KQ253_14390 PF02311 AraC-like ligand binding domain KQ253_14390 PF12833 Helix-turn-helix domain KQ253_14395 PF00248 Aldo/keto reductase family KQ253_14415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_14415 PF03466 LysR substrate binding domain KQ253_14420 PF07690 Major Facilitator Superfamily KQ253_14430 PF00324 Amino acid permease KQ253_14440 PF13737 Transposase DDE domain KQ253_14445 PF13737 Transposase DDE domain KQ253_14450 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ253_14450 PF12833 Helix-turn-helix domain KQ253_14455 PF13737 Transposase DDE domain KQ253_14460 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ253_14460 PF12833 Helix-turn-helix domain KQ253_14475 PF01593 Flavin containing amine oxidoreductase KQ253_14480 PF02678 Pirin KQ253_14480 PF05726 Pirin C-terminal cupin domain KQ253_14485 PF00857 Isochorismatase family KQ253_14490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_14495 PF00171 Aldehyde dehydrogenase family KQ253_14505 PF00392 Bacterial regulatory proteins, gntR family KQ253_14505 PF00155 Aminotransferase class I and II KQ253_14520 PF03591 AzlC protein KQ253_14530 PF00436 Single-strand binding protein family KQ253_14535 PF07690 Major Facilitator Superfamily KQ253_14545 PF02581 Thiamine monophosphate synthase KQ253_14545 PF03070 TENA/THI-4/PQQC family KQ253_14545 PF08543 Phosphomethylpyrimidine kinase KQ253_14550 PF06942 GlpM protein KQ253_14560 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_14560 PF00107 Zinc-binding dehydrogenase KQ253_14565 PF16925 Tetracyclin repressor-like, C-terminal domain KQ253_14565 PF00440 Bacterial regulatory proteins, tetR family KQ253_14570 PF00005 ABC transporter KQ253_14570 PF17755 UvrA DNA-binding domain KQ253_14570 PF17760 UvrA interaction domain KQ253_14595 PF02028 BCCT, betaine/carnitine/choline family transporter KQ253_14605 PF00474 Sodium:solute symporter family KQ253_14610 PF04341 Protein of unknown function, DUF485 KQ253_14615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_14615 PF00672 HAMP domain KQ253_14615 PF00072 Response regulator receiver domain KQ253_14615 PF01627 Hpt domain KQ253_14615 PF00512 His Kinase A (phospho-acceptor) domain KQ253_14625 PF00196 Bacterial regulatory proteins, luxR family KQ253_14625 PF00072 Response regulator receiver domain KQ253_14630 PF03358 NADPH-dependent FMN reductase KQ253_14635 PF00296 Luciferase-like monooxygenase KQ253_14640 PF01037 Lrp/AsnC ligand binding domain KQ253_14645 PF00857 Isochorismatase family KQ253_14650 PF00501 AMP-binding enzyme KQ253_14650 PF13193 AMP-binding enzyme C-terminal domain KQ253_14650 PF16177 Acetyl-coenzyme A synthetase N-terminus KQ253_14660 PF00924 Mechanosensitive ion channel KQ253_14665 PF04452 RNA methyltransferase KQ253_14670 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KQ253_14675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ253_14695 PF17768 RecJ OB domain KQ253_14695 PF01368 DHH family KQ253_14695 PF02272 DHHA1 domain KQ253_14700 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KQ253_14700 PF01243 Pyridoxamine 5'-phosphate oxidase KQ253_14705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ253_14705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ253_14705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ253_14705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ253_14715 PF00571 CBS domain KQ253_14715 PF00478 IMP dehydrogenase / GMP reductase domain KQ253_14720 PF03692 Putative zinc- or iron-chelating domain KQ253_14725 PF01613 Flavin reductase like domain KQ253_14725 PF00258 Flavodoxin KQ253_14730 PF07715 TonB-dependent Receptor Plug Domain KQ253_14730 PF00593 TonB dependent receptor KQ253_14735 PF01169 Uncharacterized protein family UPF0016 KQ253_14745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ253_14745 PF00364 Biotin-requiring enzyme KQ253_14745 PF02817 e3 binding domain KQ253_14750 PF00456 Transketolase, thiamine diphosphate binding domain KQ253_14750 PF17831 Pyruvate dehydrogenase E1 component middle domain KQ253_14755 PF01551 Peptidase family M23 KQ253_14765 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KQ253_14770 PF12327 FtsZ family, C-terminal domain KQ253_14770 PF00091 Tubulin/FtsZ family, GTPase domain KQ253_14775 PF02491 SHS2 domain inserted in FTSA KQ253_14780 PF08478 POTRA domain, FtsQ-type KQ253_14780 PF03799 Cell division protein FtsQ KQ253_14785 PF01820 D-ala D-ala ligase N-terminus KQ253_14785 PF07478 D-ala D-ala ligase C-terminus KQ253_14790 PF01225 Mur ligase family, catalytic domain KQ253_14790 PF08245 Mur ligase middle domain KQ253_14790 PF02875 Mur ligase family, glutamate ligase domain KQ253_14795 PF04101 Glycosyltransferase family 28 C-terminal domain KQ253_14795 PF03033 Glycosyltransferase family 28 N-terminal domain KQ253_14800 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KQ253_14800 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KQ253_14810 PF00593 TonB dependent receptor KQ253_14810 PF07715 TonB-dependent Receptor Plug Domain KQ253_14815 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KQ253_14820 PF02463 RecF/RecN/SMC N terminal domain KQ253_14830 PF00156 Phosphoribosyl transferase domain KQ253_14835 PF03372 Endonuclease/Exonuclease/phosphatase family KQ253_14840 PF03960 ArsC family KQ253_14850 PF07859 alpha/beta hydrolase fold KQ253_14855 PF07694 5TMR of 5TMR-LYT KQ253_14855 PF00990 Diguanylate cyclase, GGDEF domain KQ253_14860 PF11412 Disulphide bond corrector protein DsbC KQ253_14860 PF02683 Cytochrome C biogenesis protein transmembrane region KQ253_14890 PF00576 HIUase/Transthyretin family KQ253_14895 PF00860 Permease family KQ253_14905 PF01494 FAD binding domain KQ253_14910 PF03561 Allantoicase repeat KQ253_14915 PF04115 Ureidoglycolate lyase KQ253_14920 PF00986 DNA gyrase B subunit, carboxyl terminus KQ253_14920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_14920 PF01751 Toprim domain KQ253_14920 PF00204 DNA gyrase B KQ253_14925 PF05728 Uncharacterised protein family (UPF0227) KQ253_14970 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KQ253_14970 PF04717 Type VI secretion system, phage-baseplate injector KQ253_14970 PF13296 Putative type VI secretion system Rhs element Vgr KQ253_14975 PF02600 Disulfide bond formation protein DsbB KQ253_14980 PF04262 Glutamate-cysteine ligase KQ253_14995 PF04286 Protein of unknown function (DUF445) KQ253_15000 PF00155 Aminotransferase class I and II KQ253_15005 PF01554 MatE KQ253_15010 PF00106 short chain dehydrogenase KQ253_15020 PF00486 Transcriptional regulatory protein, C terminal KQ253_15020 PF00072 Response regulator receiver domain KQ253_15025 PF00989 PAS fold KQ253_15025 PF11808 Phosphate regulon sensor protein PhoR KQ253_15025 PF00512 His Kinase A (phospho-acceptor) domain KQ253_15025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_15035 PF02666 Phosphatidylserine decarboxylase KQ253_15040 PF00581 Rhodanese-like domain KQ253_15045 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KQ253_15045 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KQ253_15050 PF02580 D-Tyr-tRNA(Tyr) deacylase KQ253_15075 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KQ253_15075 PF00925 GTP cyclohydrolase II KQ253_15080 PF00885 6,7-dimethyl-8-ribityllumazine synthase KQ253_15085 PF01029 NusB family KQ253_15090 PF02769 AIR synthase related protein, C-terminal domain KQ253_15090 PF00586 AIR synthase related protein, N-terminal domain KQ253_15095 PF04608 Phosphatidylglycerophosphatase A KQ253_15100 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_15100 PF14602 Hexapeptide repeat of succinyl-transferase KQ253_15100 PF12804 MobA-like NTP transferase domain KQ253_15105 PF01380 SIS domain KQ253_15110 PF08722 TnsA endonuclease N terminal KQ253_15110 PF08721 TnsA endonuclease C terminal KQ253_15115 PF00665 Integrase core domain KQ253_15120 PF13401 AAA domain KQ253_15120 PF11426 Tn7 transposition regulator TnsC KQ253_15125 PF15978 Tn7-like transposition protein D KQ253_15125 PF06527 TniQ KQ253_15130 PF18623 TnsE C-terminal domain KQ253_15155 PF13427 Domain of unknown function (DUF4111) KQ253_15155 PF01909 Nucleotidyltransferase domain KQ253_15160 PF00583 Acetyltransferase (GNAT) family KQ253_15165 PF00186 Dihydrofolate reductase KQ253_15170 PF13495 Phage integrase, N-terminal SAM-like domain KQ253_15170 PF00589 Phage integrase family KQ253_15180 PF13495 Phage integrase, N-terminal SAM-like domain KQ253_15180 PF00589 Phage integrase family KQ253_15185 PF01526 Tn3 transposase DDE domain KQ253_15185 PF13700 Domain of unknown function (DUF4158) KQ253_15190 PF00239 Resolvase, N terminal domain KQ253_15190 PF02796 Helix-turn-helix domain of resolvase KQ253_15205 PF01177 Asp/Glu/Hydantoin racemase KQ253_15220 PF00491 Arginase family KQ253_15225 PF01979 Amidohydrolase family KQ253_15230 PF00324 Amino acid permease KQ253_15235 PF00221 Aromatic amino acid lyase KQ253_15240 PF17392 Urocanase C-terminal domain KQ253_15240 PF17391 Urocanase N-terminal domain KQ253_15240 PF01175 Urocanase Rossmann-like domain KQ253_15245 PF05962 HutD KQ253_15250 PF07702 UTRA domain KQ253_15250 PF00392 Bacterial regulatory proteins, gntR family KQ253_15260 PF07683 Cobalamin synthesis protein cobW C-terminal domain KQ253_15260 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ253_15270 PF00324 Amino acid permease KQ253_15280 PF14497 Glutathione S-transferase, C-terminal domain KQ253_15280 PF02798 Glutathione S-transferase, N-terminal domain KQ253_15285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ253_15295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ253_15300 PF04463 Protein of unknown function (DUF523) KQ253_15305 PF01554 MatE KQ253_15310 PF01758 Sodium Bile acid symporter family KQ253_15315 PF00857 Isochorismatase family KQ253_15320 PF00701 Dihydrodipicolinate synthetase family KQ253_15330 PF01259 SAICAR synthetase KQ253_15340 PF01226 Formate/nitrite transporter KQ253_15345 PF00004 ATPase family associated with various cellular activities (AAA) KQ253_15345 PF16193 AAA C-terminal domain KQ253_15345 PF12002 MgsA AAA+ ATPase C terminal KQ253_15350 PF07995 Glucose / Sorbosone dehydrogenase KQ253_15355 PF03692 Putative zinc- or iron-chelating domain KQ253_15360 PF07043 Protein of unknown function (DUF1328) KQ253_15375 PF14815 NUDIX domain KQ253_15375 PF00633 Helix-hairpin-helix motif KQ253_15375 PF10576 Iron-sulfur binding domain of endonuclease III KQ253_15375 PF00730 HhH-GPD superfamily base excision DNA repair protein KQ253_15390 PF03352 Methyladenine glycosylase KQ253_15395 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_15395 PF00107 Zinc-binding dehydrogenase KQ253_15400 PF00155 Aminotransferase class I and II KQ253_15400 PF00392 Bacterial regulatory proteins, gntR family KQ253_15415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_15415 PF03466 LysR substrate binding domain KQ253_15420 PF00248 Aldo/keto reductase family KQ253_15425 PF07690 Major Facilitator Superfamily KQ253_15435 PF01113 Dihydrodipicolinate reductase, N-terminus KQ253_15435 PF05173 Dihydrodipicolinate reductase, C-terminus KQ253_15445 PF00684 DnaJ central domain KQ253_15445 PF01556 DnaJ C terminal domain KQ253_15445 PF00226 DnaJ domain KQ253_15455 PF00873 AcrB/AcrD/AcrF family KQ253_15460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ253_15465 PF08361 MAATS-type transcriptional repressor, C-terminal region KQ253_15465 PF00440 Bacterial regulatory proteins, tetR family KQ253_15470 PF00311 Phosphoenolpyruvate carboxylase KQ253_15475 PF00860 Permease family KQ253_15480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_15480 PF03466 LysR substrate binding domain KQ253_15495 PF00920 Dehydratase family KQ253_15500 PF00551 Formyl transferase KQ253_15500 PF02911 Formyl transferase, C-terminal domain KQ253_15505 PF01029 NusB family KQ253_15505 PF01189 16S rRNA methyltransferase RsmB/F KQ253_15515 PF00209 Sodium:neurotransmitter symporter family KQ253_15555 PF00579 tRNA synthetases class I (W and Y) KQ253_15560 PF03702 Anhydro-N-acetylmuramic acid kinase KQ253_15565 PF00561 alpha/beta hydrolase fold KQ253_15570 PF01521 Iron-sulphur cluster biosynthesis KQ253_15590 PF00005 ABC transporter KQ253_15590 PF12848 ABC transporter KQ253_15595 PF09335 SNARE associated Golgi protein KQ253_15605 PF00986 DNA gyrase B subunit, carboxyl terminus KQ253_15605 PF18053 DNA gyrase B subunit insert domain KQ253_15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_15605 PF01751 Toprim domain KQ253_15605 PF00204 DNA gyrase B KQ253_15610 PF02463 RecF/RecN/SMC N terminal domain KQ253_15615 PF02767 DNA polymerase III beta subunit, central domain KQ253_15615 PF02768 DNA polymerase III beta subunit, C-terminal domain KQ253_15615 PF00712 DNA polymerase III beta subunit, N-terminal domain KQ253_15625 PF11638 DnaA N-terminal domain KQ253_15625 PF08299 Bacterial dnaA protein helix-turn-helix KQ253_15625 PF00308 Bacterial dnaA protein KQ253_15630 PF00468 Ribosomal protein L34 KQ253_15635 PF00825 Ribonuclease P KQ253_15640 PF01809 Putative membrane protein insertion efficiency factor KQ253_15645 PF02096 60Kd inner membrane protein KQ253_15645 PF14849 YidC periplasmic domain KQ253_15650 PF01926 50S ribosome-binding GTPase KQ253_15650 PF12631 MnmE helical domain KQ253_15650 PF10396 GTP-binding protein TrmE N-terminus KQ253_15655 PF02583 Metal-sensitive transcriptional repressor KQ253_15660 PF01545 Cation efflux family KQ253_15660 PF16916 Dimerisation domain of Zinc Transporter KQ253_15665 PF13098 Thioredoxin-like domain KQ253_15665 PF10411 Disulfide bond isomerase protein N-terminus KQ253_15675 PF00156 Phosphoribosyl transferase domain KQ253_15680 PF01979 Amidohydrolase family KQ253_15685 PF00355 Rieske [2Fe-2S] domain KQ253_15690 PF03738 Glutathionylspermidine synthase preATP-grasp KQ253_15700 PF03741 Integral membrane protein TerC family KQ253_15705 PF01569 PAP2 superfamily KQ253_15720 PF07690 Major Facilitator Superfamily KQ253_15725 PF13542 Helix-turn-helix domain of transposase family ISL3 KQ253_15725 PF01610 Transposase KQ253_15725 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 KQ253_15740 PF02875 Mur ligase family, glutamate ligase domain KQ253_15740 PF08245 Mur ligase middle domain KQ253_15740 PF01225 Mur ligase family, catalytic domain KQ253_15750 PF00731 AIR carboxylase KQ253_15755 PF02222 ATP-grasp domain KQ253_15755 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KQ253_15760 PF13406 Transglycosylase SLT domain KQ253_15780 PF00012 Hsp70 protein KQ253_15785 PF01025 GrpE KQ253_15810 PF07859 alpha/beta hydrolase fold KQ253_15815 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KQ253_15855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ253_15860 PF01252 Signal peptidase (SPase) II KQ253_15865 PF08264 Anticodon-binding domain of tRNA KQ253_15865 PF06827 Zinc finger found in FPG and IleRS KQ253_15865 PF00133 tRNA synthetases class I (I, L, M and V) KQ253_15870 PF01687 Riboflavin kinase KQ253_15870 PF06574 FAD synthetase KQ253_15880 PF01048 Phosphorylase superfamily KQ253_15885 PF08362 YcdC-like protein, C-terminal region KQ253_15885 PF00440 Bacterial regulatory proteins, tetR family KQ253_15890 PF00005 ABC transporter KQ253_15895 PF00528 Binding-protein-dependent transport system inner membrane component KQ253_15900 PF00296 Luciferase-like monooxygenase KQ253_15905 PF09084 NMT1/THI5 like KQ253_15910 PF09084 NMT1/THI5 like KQ253_15915 PF00696 Amino acid kinase family KQ253_15915 PF00583 Acetyltransferase (GNAT) family KQ253_15930 PF00106 short chain dehydrogenase KQ253_15935 PF13419 Haloacid dehalogenase-like hydrolase KQ253_15945 PF01323 DSBA-like thioredoxin domain KQ253_15950 PF08360 QacR-like protein, C-terminal region KQ253_15950 PF00440 Bacterial regulatory proteins, tetR family KQ253_15955 PF00440 Bacterial regulatory proteins, tetR family KQ253_15960 PF00175 Oxidoreductase NAD-binding domain KQ253_15965 PF00487 Fatty acid desaturase KQ253_15970 PF01138 3' exoribonuclease family, domain 1 KQ253_15970 PF03725 3' exoribonuclease family, domain 2 KQ253_15980 PF05506 Domain of unknown function (DUF756) KQ253_15980 PF04185 Phosphoesterase family KQ253_15990 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KQ253_15990 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KQ253_15995 PF01510 N-acetylmuramoyl-L-alanine amidase KQ253_16000 PF03023 Lipid II flippase MurJ KQ253_16005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ253_16005 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KQ253_16010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ253_16010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KQ253_16015 PF13614 AAA domain KQ253_16015 PF13807 G-rich domain on putative tyrosine kinase KQ253_16015 PF02706 Chain length determinant protein KQ253_16020 PF01451 Low molecular weight phosphotyrosine protein phosphatase KQ253_16025 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KQ253_16025 PF10531 SLBB domain KQ253_16025 PF02563 Polysaccharide biosynthesis/export protein KQ253_16030 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KQ253_16030 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KQ253_16030 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KQ253_16035 PF01370 NAD dependent epimerase/dehydratase family KQ253_16060 PF08485 Polysaccharide biosynthesis protein C-terminal KQ253_16060 PF02719 Polysaccharide biosynthesis protein KQ253_16065 PF01370 NAD dependent epimerase/dehydratase family KQ253_16070 PF02350 UDP-N-acetylglucosamine 2-epimerase KQ253_16075 PF13579 Glycosyl transferase 4-like domain KQ253_16080 PF01370 NAD dependent epimerase/dehydratase family KQ253_16085 PF00953 Glycosyl transferase family 4 KQ253_16090 PF02397 Bacterial sugar transferase KQ253_16095 PF00483 Nucleotidyl transferase KQ253_16100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KQ253_16100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KQ253_16100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KQ253_16105 PF00342 Phosphoglucose isomerase KQ253_16110 PF16363 GDP-mannose 4,6 dehydratase KQ253_16115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ253_16115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ253_16115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ253_16115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ253_16120 PF02652 L-lactate permease KQ253_16125 PF00392 Bacterial regulatory proteins, gntR family KQ253_16125 PF07729 FCD domain KQ253_16130 PF01070 FMN-dependent dehydrogenase KQ253_16135 PF01565 FAD binding domain KQ253_16135 PF09330 D-lactate dehydrogenase, membrane binding KQ253_16140 PF00155 Aminotransferase class I and II KQ253_16150 PF07729 FCD domain KQ253_16150 PF00392 Bacterial regulatory proteins, gntR family KQ253_16160 PF00285 Citrate synthase, C-terminal domain KQ253_16165 PF00330 Aconitase family (aconitate hydratase) KQ253_16165 PF00694 Aconitase C-terminal domain KQ253_16185 PF00293 NUDIX domain KQ253_16205 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ253_16205 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ253_16220 PF00849 RNA pseudouridylate synthase KQ253_16235 PF00593 TonB dependent receptor KQ253_16235 PF07715 TonB-dependent Receptor Plug Domain KQ253_16245 PF01037 Lrp/AsnC ligand binding domain KQ253_16250 PF01266 FAD dependent oxidoreductase KQ253_16255 PF01168 Alanine racemase, N-terminal domain KQ253_16255 PF00842 Alanine racemase, C-terminal domain KQ253_16260 PF01042 Endoribonuclease L-PSP KQ253_16265 PF00324 Amino acid permease KQ253_16270 PF00324 Amino acid permease KQ253_16280 PF00171 Aldehyde dehydrogenase family KQ253_16285 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ253_16285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ253_16290 PF00501 AMP-binding enzyme KQ253_16290 PF13193 AMP-binding enzyme C-terminal domain KQ253_16295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_16295 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_16295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_16300 PF00378 Enoyl-CoA hydratase/isomerase KQ253_16305 PF00378 Enoyl-CoA hydratase/isomerase KQ253_16325 PF01722 BolA-like protein KQ253_16335 PF13614 AAA domain KQ253_16350 PF09335 SNARE associated Golgi protein KQ253_16355 PF07681 DoxX KQ253_16360 PF04286 Protein of unknown function (DUF445) KQ253_16365 PF00958 GMP synthase C terminal domain KQ253_16365 PF00117 Glutamine amidotransferase class-I KQ253_16365 PF02540 NAD synthase KQ253_16370 PF13427 Domain of unknown function (DUF4111) KQ253_16370 PF01909 Nucleotidyltransferase domain KQ253_16375 PF03551 Transcriptional regulator PadR-like family KQ253_16385 PF05726 Pirin C-terminal cupin domain KQ253_16385 PF02678 Pirin KQ253_16405 PF00750 tRNA synthetases class I (R) KQ253_16405 PF05746 DALR anticodon binding domain KQ253_16405 PF03485 Arginyl tRNA synthetase N terminal domain KQ253_16410 PF00390 Malic enzyme, N-terminal domain KQ253_16410 PF03949 Malic enzyme, NAD binding domain KQ253_16420 PF13737 Transposase DDE domain KQ253_16425 PF04261 Dyp-type peroxidase family KQ253_16430 PF01810 LysE type translocator KQ253_16435 PF00950 ABC 3 transport family KQ253_16440 PF00005 ABC transporter KQ253_16460 PF00119 ATP synthase A chain KQ253_16465 PF00137 ATP synthase subunit C KQ253_16470 PF00430 ATP synthase B/B' CF(0) KQ253_16475 PF00213 ATP synthase delta (OSCP) subunit KQ253_16480 PF00306 ATP synthase alpha/beta chain, C terminal domain KQ253_16480 PF02874 ATP synthase alpha/beta family, beta-barrel domain KQ253_16480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ253_16485 PF00231 ATP synthase KQ253_16490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ253_16490 PF02874 ATP synthase alpha/beta family, beta-barrel domain KQ253_16495 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KQ253_16505 PF00255 Glutathione peroxidase KQ253_16515 PF07690 Major Facilitator Superfamily KQ253_16520 PF00440 Bacterial regulatory proteins, tetR family KQ253_16525 PF00892 EamA-like transporter family KQ253_16530 PF01300 Telomere recombination KQ253_16535 PF02481 DNA recombination-mediator protein A KQ253_16535 PF17782 DprA winged helix domain KQ253_16545 PF01327 Polypeptide deformylase KQ253_16570 PF00440 Bacterial regulatory proteins, tetR family KQ253_16605 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_16615 PF03358 NADPH-dependent FMN reductase KQ253_16635 PF13737 Transposase DDE domain KQ253_16645 PF04055 Radical SAM superfamily KQ253_16645 PF11842 Domain of unknown function (DUF3362) KQ253_16645 PF08497 Radical SAM N-terminal KQ253_16660 PF00817 impB/mucB/samB family KQ253_16660 PF11799 impB/mucB/samB family C-terminal domain KQ253_16660 PF11798 IMS family HHH motif KQ253_16670 PF07690 Major Facilitator Superfamily KQ253_16675 PF03641 Possible lysine decarboxylase KQ253_16680 PF03471 Transporter associated domain KQ253_16680 PF03741 Integral membrane protein TerC family KQ253_16685 PF02810 SEC-C motif KQ253_16690 PF03458 UPF0126 domain KQ253_16695 PF07690 Major Facilitator Superfamily KQ253_16700 PF03989 DNA gyrase C-terminal domain, beta-propeller KQ253_16700 PF00521 DNA gyrase/topoisomerase IV, subunit A KQ253_16705 PF00501 AMP-binding enzyme KQ253_16705 PF13193 AMP-binding enzyme C-terminal domain KQ253_16725 PF00719 Inorganic pyrophosphatase KQ253_16730 PF03573 outer membrane porin, OprD family KQ253_16740 PF00701 Dihydrodipicolinate synthetase family KQ253_16750 PF00155 Aminotransferase class I and II KQ253_16750 PF00392 Bacterial regulatory proteins, gntR family KQ253_16755 PF01078 Magnesium chelatase, subunit ChlI KQ253_16755 PF13335 Magnesium chelatase, subunit ChlI C-terminal KQ253_16765 PF00665 Integrase core domain KQ253_16785 PF00872 Transposase, Mutator family KQ253_16800 PF00582 Universal stress protein family KQ253_16805 PF00916 Sulfate permease family KQ253_16805 PF01740 STAS domain KQ253_16815 PF01078 Magnesium chelatase, subunit ChlI KQ253_16815 PF13335 Magnesium chelatase, subunit ChlI C-terminal KQ253_16825 PF00543 Nitrogen regulatory protein P-II KQ253_16830 PF00909 Ammonium Transporter Family KQ253_16835 PF03477 ATP cone domain KQ253_16840 PF01872 RibD C-terminal domain KQ253_16840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KQ253_16850 PF00677 Lumazine binding domain KQ253_16870 PF02789 Cytosol aminopeptidase family, N-terminal domain KQ253_16870 PF00883 Cytosol aminopeptidase family, catalytic domain KQ253_16880 PF03739 Lipopolysaccharide export system permease LptF/LptG KQ253_16885 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KQ253_16885 PF01676 Metalloenzyme superfamily KQ253_16890 PF00595 PDZ domain KQ253_16890 PF03572 Peptidase family S41 KQ253_16895 PF00072 Response regulator receiver domain KQ253_16895 PF00158 Sigma-54 interaction domain KQ253_16895 PF02954 Bacterial regulatory protein, Fis family KQ253_16900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_16900 PF00512 His Kinase A (phospho-acceptor) domain KQ253_16905 PF00196 Bacterial regulatory proteins, luxR family KQ253_16905 PF00072 Response regulator receiver domain KQ253_16910 PF00768 D-alanyl-D-alanine carboxypeptidase KQ253_16915 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_16920 PF01842 ACT domain KQ253_16920 PF00742 Homoserine dehydrogenase KQ253_16920 PF03447 Homoserine dehydrogenase, NAD binding domain KQ253_16925 PF10411 Disulfide bond isomerase protein N-terminus KQ253_16925 PF13098 Thioredoxin-like domain KQ253_16930 PF02899 Phage integrase, N-terminal SAM-like domain KQ253_16930 PF00589 Phage integrase family KQ253_16940 PF07670 Nucleoside recognition KQ253_16940 PF07664 Ferrous iron transport protein B C terminus KQ253_16940 PF02421 Ferrous iron transport protein B KQ253_16950 PF02875 Mur ligase family, glutamate ligase domain KQ253_16950 PF08245 Mur ligase middle domain KQ253_16955 PF01098 Cell cycle protein KQ253_16960 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ253_16965 PF01258 Prokaryotic dksA/traR C4-type zinc finger KQ253_16970 PF00149 Calcineurin-like phosphoesterase KQ253_16975 PF00293 NUDIX domain KQ253_16980 PF13667 ThiC-associated domain KQ253_16980 PF01964 Radical SAM ThiC family KQ253_16995 PF00892 EamA-like transporter family KQ253_17000 PF02321 Outer membrane efflux protein KQ253_17005 PF01895 PhoU domain KQ253_17010 PF04362 Bacterial Fe(2+) trafficking KQ253_17015 PF00206 Lyase KQ253_17015 PF14698 Argininosuccinate lyase C-terminal KQ253_17020 PF06580 Histidine kinase KQ253_17020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_17020 PF07694 5TMR of 5TMR-LYT KQ253_17025 PF00072 Response regulator receiver domain KQ253_17025 PF04397 LytTr DNA-binding domain KQ253_17030 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KQ253_17030 PF03900 Porphobilinogen deaminase, C-terminal domain KQ253_17055 PF13737 Transposase DDE domain KQ253_17065 PF00816 H-NS histone family KQ253_17080 PF03958 Bacterial type II/III secretion system short domain KQ253_17080 PF00263 Bacterial type II and III secretion system protein KQ253_17085 PF00498 FHA domain KQ253_17085 PF12401 Protein of unknown function (DUF2662) KQ253_17090 PF13419 Haloacid dehalogenase-like hydrolase KQ253_17095 PF00425 chorismate binding enzyme KQ253_17095 PF04715 Anthranilate synthase component I, N terminal region KQ253_17120 PF00009 Elongation factor Tu GTP binding domain KQ253_17120 PF03144 Elongation factor Tu domain 2 KQ253_17120 PF03143 Elongation factor Tu C-terminal domain KQ253_17130 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KQ253_17135 PF00467 KOW motif KQ253_17135 PF02357 Transcription termination factor nusG KQ253_17140 PF00298 Ribosomal protein L11, RNA binding domain KQ253_17140 PF03946 Ribosomal protein L11, N-terminal domain KQ253_17145 PF00687 Ribosomal protein L1p/L10e family KQ253_17150 PF00466 Ribosomal protein L10 KQ253_17155 PF16320 Ribosomal protein L7/L12 dimerisation domain KQ253_17155 PF00542 Ribosomal protein L7/L12 C-terminal domain KQ253_17160 PF04563 RNA polymerase beta subunit KQ253_17160 PF00562 RNA polymerase Rpb2, domain 6 KQ253_17160 PF10385 RNA polymerase beta subunit external 1 domain KQ253_17160 PF04560 RNA polymerase Rpb2, domain 7 KQ253_17160 PF04561 RNA polymerase Rpb2, domain 2 KQ253_17160 PF04565 RNA polymerase Rpb2, domain 3 KQ253_17165 PF04997 RNA polymerase Rpb1, domain 1 KQ253_17165 PF00623 RNA polymerase Rpb1, domain 2 KQ253_17165 PF04983 RNA polymerase Rpb1, domain 3 KQ253_17165 PF05000 RNA polymerase Rpb1, domain 4 KQ253_17165 PF04998 RNA polymerase Rpb1, domain 5 KQ253_17185 PF00561 alpha/beta hydrolase fold KQ253_17190 PF13726 Na+-H+ antiporter family KQ253_17190 PF03553 Na+/H+ antiporter family KQ253_17205 PF00183 Hsp90 protein KQ253_17205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_17220 PF01323 DSBA-like thioredoxin domain KQ253_17230 PF00376 MerR family regulatory protein KQ253_17230 PF09278 MerR, DNA binding KQ253_17245 PF02803 Thiolase, C-terminal domain KQ253_17245 PF00108 Thiolase, N-terminal domain KQ253_17250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ253_17250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ253_17250 PF00378 Enoyl-CoA hydratase/isomerase KQ253_17275 PF01541 GIY-YIG catalytic domain KQ253_17275 PF02151 UvrB/uvrC motif KQ253_17275 PF08459 UvrC Helix-hairpin-helix N-terminal KQ253_17285 PF01066 CDP-alcohol phosphatidyltransferase KQ253_17290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KQ253_17290 PF02805 Metal binding domain of Ada KQ253_17290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ253_17290 PF12833 Helix-turn-helix domain KQ253_17315 PF13533 Biotin-lipoyl like KQ253_17320 PF03652 Holliday junction resolvase KQ253_17325 PF02622 Uncharacterized ACR, COG1678 KQ253_17330 PF02463 RecF/RecN/SMC N terminal domain KQ253_17340 PF06865 Pyrimidine/purine nucleoside phosphorylase KQ253_17345 PF00588 SpoU rRNA Methylase family KQ253_17345 PF08032 RNA 2'-O ribose methyltransferase substrate binding KQ253_17355 PF01121 Dephospho-CoA kinase KQ253_17360 PF06750 Bacterial Peptidase A24 N-terminal domain KQ253_17360 PF01478 Type IV leader peptidase family KQ253_17365 PF00482 Type II secretion system (T2SS), protein F KQ253_17370 PF00437 Type II/IV secretion system protein KQ253_17370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KQ253_17375 PF00121 Triosephosphate isomerase KQ253_17380 PF03840 Preprotein translocase SecG subunit KQ253_17400 PF02576 RimP N-terminal domain KQ253_17400 PF17384 RimP C-terminal SH3 domain KQ253_17405 PF13184 NusA-like KH domain KQ253_17405 PF08529 NusA N-terminal domain KQ253_17405 PF00575 S1 RNA binding domain KQ253_17410 PF04760 Translation initiation factor IF-2, N-terminal region KQ253_17410 PF08364 Bacterial translation initiation factor IF-2 associated region KQ253_17410 PF00009 Elongation factor Tu GTP binding domain KQ253_17410 PF11987 Translation-initiation factor 2 KQ253_17415 PF02033 Ribosome-binding factor A KQ253_17420 PF03334 Na+/H+ antiporter subunit KQ253_17425 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KQ253_17430 PF01899 Na+/H+ ion antiporter subunit KQ253_17435 PF00361 Proton-conducting membrane transporter KQ253_17440 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KQ253_17445 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KQ253_17445 PF13244 Domain of unknown function (DUF4040) KQ253_17445 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KQ253_17445 PF00361 Proton-conducting membrane transporter KQ253_17460 PF01502 Phosphoribosyl-AMP cyclohydrolase KQ253_17470 PF03109 ABC1 family KQ253_17480 PF01209 ubiE/COQ5 methyltransferase family KQ253_17490 PF03976 Polyphosphate kinase 2 (PPK2) KQ253_17500 PF17946 RecC C-terminal domain KQ253_17505 PF12705 PD-(D/E)XK nuclease superfamily KQ253_17505 PF00580 UvrD/REP helicase N-terminal domain KQ253_17505 PF13361 UvrD-like helicase C-terminal domain KQ253_17510 PF13538 UvrD-like helicase C-terminal domain KQ253_17515 PF00144 Beta-lactamase KQ253_17520 PF00312 Ribosomal protein S15 KQ253_17525 PF00575 S1 RNA binding domain KQ253_17525 PF03725 3' exoribonuclease family, domain 2 KQ253_17525 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KQ253_17525 PF00013 KH domain KQ253_17525 PF01138 3' exoribonuclease family, domain 1 KQ253_17530 PF01544 CorA-like Mg2+ transporter protein KQ253_17540 PF00226 DnaJ domain KQ253_17540 PF01556 DnaJ C terminal domain KQ253_17550 PF01430 Hsp33 protein KQ253_17555 PF02254 TrkA-N domain KQ253_17555 PF00999 Sodium/hydrogen exchanger family KQ253_17560 PF00271 Helicase conserved C-terminal domain KQ253_17560 PF17764 3′ DNA-binding domain (3′BD) KQ253_17560 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KQ253_17560 PF00270 DEAD/DEAH box helicase KQ253_17560 PF18074 Primosomal protein N C-terminal domain KQ253_17565 PF00482 Type II secretion system (T2SS), protein F KQ253_17570 PF07963 Prokaryotic N-terminal methylation motif KQ253_17570 PF08334 Type II secretion system (T2SS), protein G KQ253_17580 PF01588 Putative tRNA binding domain KQ253_17585 PF00795 Carbon-nitrogen hydrolase KQ253_17590 PF00571 CBS domain KQ253_17590 PF03471 Transporter associated domain KQ253_17595 PF01206 Sulfurtransferase TusA KQ253_17610 PF01177 Asp/Glu/Hydantoin racemase KQ253_17620 PF00762 Ferrochelatase KQ253_17625 PF00753 Metallo-beta-lactamase superfamily KQ253_17630 PF03884 DNA gyrase inhibitor YacG KQ253_17640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KQ253_17640 PF13247 4Fe-4S dicluster domain KQ253_17640 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_17650 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KQ253_17665 PF01197 Ribosomal protein L31 KQ253_17670 PF03109 ABC1 family KQ253_17675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_17675 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ253_17680 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ253_17680 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_17680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_17685 PF01554 MatE KQ253_17700 PF06969 HemN C-terminal domain KQ253_17700 PF04055 Radical SAM superfamily KQ253_17710 PF03466 LysR substrate binding domain KQ253_17710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_17725 PF00501 AMP-binding enzyme KQ253_17725 PF13193 AMP-binding enzyme C-terminal domain KQ253_17730 PF10150 Ribonuclease E/G family KQ253_17730 PF00575 S1 RNA binding domain KQ253_17730 PF12111 Polyribonucleotide phosphorylase C terminal KQ253_17735 PF00849 RNA pseudouridylate synthase KQ253_17735 PF01479 S4 domain KQ253_17740 PF13419 Haloacid dehalogenase-like hydrolase KQ253_17745 PF08279 HTH domain KQ253_17745 PF13280 WYL domain KQ253_17750 PF02798 Glutathione S-transferase, N-terminal domain KQ253_17760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_17760 PF03466 LysR substrate binding domain KQ253_17765 PF12706 Beta-lactamase superfamily domain KQ253_17770 PF00141 Peroxidase KQ253_17775 PF01590 GAF domain KQ253_17775 PF05524 PEP-utilising enzyme, N-terminal KQ253_17775 PF00391 PEP-utilising enzyme, mobile domain KQ253_17775 PF02896 PEP-utilising enzyme, TIM barrel domain KQ253_17780 PF00293 NUDIX domain KQ253_17800 PF03466 LysR substrate binding domain KQ253_17800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_17810 PF00330 Aconitase family (aconitate hydratase) KQ253_17815 PF00694 Aconitase C-terminal domain KQ253_17825 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ253_17840 PF01176 Translation initiation factor 1A / IF-1 KQ253_17850 PF01416 tRNA pseudouridine synthase KQ253_17870 PF02774 Semialdehyde dehydrogenase, dimerisation domain KQ253_17870 PF01118 Semialdehyde dehydrogenase, NAD binding domain KQ253_17885 PF13936 Helix-turn-helix domain KQ253_17885 PF00665 Integrase core domain KQ253_17900 PF03279 Bacterial lipid A biosynthesis acyltransferase KQ253_17905 PF01810 LysE type translocator KQ253_17910 PF16326 ABC transporter C-terminal domain KQ253_17910 PF12848 ABC transporter KQ253_17910 PF00005 ABC transporter KQ253_17915 PF04102 SlyX KQ253_17920 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_17920 PF00107 Zinc-binding dehydrogenase KQ253_17925 PF01638 HxlR-like helix-turn-helix KQ253_17935 PF08272 Topoisomerase I zinc-ribbon-like KQ253_17935 PF01751 Toprim domain KQ253_17935 PF01396 Topoisomerase DNA binding C4 zinc finger KQ253_17935 PF01131 DNA topoisomerase KQ253_17950 PF00580 UvrD/REP helicase N-terminal domain KQ253_17950 PF13361 UvrD-like helicase C-terminal domain KQ253_17955 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KQ253_17975 PF02254 TrkA-N domain KQ253_17975 PF00999 Sodium/hydrogen exchanger family KQ253_17980 PF00471 Ribosomal protein L33 KQ253_17985 PF00830 Ribosomal L28 family KQ253_17990 PF00171 Aldehyde dehydrogenase family KQ253_18000 PF00551 Formyl transferase KQ253_18000 PF01842 ACT domain KQ253_18010 PF01618 MotA/TolQ/ExbB proton channel family KQ253_18020 PF01625 Peptide methionine sulfoxide reductase KQ253_18030 PF00186 Dihydrofolate reductase KQ253_18035 PF00303 Thymidylate synthase KQ253_18050 PF01790 Prolipoprotein diacylglyceryl transferase KQ253_18070 PF00902 Sec-independent protein translocase protein (TatC) KQ253_18075 PF02416 mttA/Hcf106 family KQ253_18080 PF02416 mttA/Hcf106 family KQ253_18090 PF01725 Ham1 family KQ253_18100 PF00561 alpha/beta hydrolase fold KQ253_18100 PF07021 Methionine biosynthesis protein MetW KQ253_18105 PF00561 alpha/beta hydrolase fold KQ253_18110 PF00682 HMGL-like KQ253_18110 PF08502 LeuA allosteric (dimerisation) domain KQ253_18115 PF13640 2OG-Fe(II) oxygenase superfamily KQ253_18115 PF18331 PKHD-type hydroxylase C-terminal domain KQ253_18120 PF07715 TonB-dependent Receptor Plug Domain KQ253_18120 PF00593 TonB dependent receptor KQ253_18125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ253_18125 PF05698 Bacterial trigger factor protein (TF) C-terminus KQ253_18125 PF05697 Bacterial trigger factor protein (TF) KQ253_18130 PF00574 Clp protease KQ253_18135 PF06689 ClpX C4-type zinc finger KQ253_18135 PF10431 C-terminal, D2-small domain, of ClpB protein KQ253_18135 PF07724 AAA domain (Cdc48 subfamily) KQ253_18150 PF05681 Fumarate hydratase (Fumerase) KQ253_18150 PF05683 Fumarase C-terminus KQ253_18155 PF07085 DRTGG domain KQ253_18155 PF01515 Phosphate acetyl/butaryl transferase KQ253_18160 PF00871 Acetokinase family KQ253_18165 PF00920 Dehydratase family KQ253_18170 PF01081 KDPG and KHG aldolase KQ253_18175 PF02447 GntP family permease KQ253_18180 PF01202 Shikimate kinase KQ253_18185 PF00171 Aldehyde dehydrogenase family KQ253_18190 PF00171 Aldehyde dehydrogenase family KQ253_18195 PF00561 alpha/beta hydrolase fold KQ253_18205 PF00933 Glycosyl hydrolase family 3 N terminal domain KQ253_18210 PF00595 PDZ domain KQ253_18210 PF03572 Peptidase family S41 KQ253_18210 PF17804 Tail specific protease N-terminal domain KQ253_18210 PF11818 C-terminal domain of tail specific protease (DUF3340) KQ253_18215 PF13439 Glycosyltransferase Family 4 KQ253_18215 PF00534 Glycosyl transferases group 1 KQ253_18220 PF01569 PAP2 superfamily KQ253_18225 PF04384 Iron-sulphur cluster assembly KQ253_18230 PF00334 Nucleoside diphosphate kinase KQ253_18235 PF04055 Radical SAM superfamily KQ253_18245 PF13464 Domain of unknown function (DUF4115) KQ253_18250 PF04551 GcpE protein KQ253_18255 PF13393 Histidyl-tRNA synthetase KQ253_18255 PF03129 Anticodon binding domain KQ253_18265 PF13360 PQQ-like domain KQ253_18270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KQ253_18270 PF01926 50S ribosome-binding GTPase KQ253_18280 PF02556 Preprotein translocase subunit SecB KQ253_18285 PF00462 Glutaredoxin KQ253_18295 PF03193 RsgA GTPase KQ253_18300 PF00929 Exonuclease KQ253_18315 PF02321 Outer membrane efflux protein KQ253_18320 PF00005 ABC transporter KQ253_18320 PF02687 FtsX-like permease family KQ253_18320 PF12704 MacB-like periplasmic core domain KQ253_18325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ253_18340 PF08264 Anticodon-binding domain of tRNA KQ253_18340 PF13603 Leucyl-tRNA synthetase, Domain 2 KQ253_18340 PF09334 tRNA synthetases class I (M) KQ253_18340 PF00133 tRNA synthetases class I (I, L, M and V) KQ253_18350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ253_18350 PF00205 Thiamine pyrophosphate enzyme, central domain KQ253_18350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ253_18355 PF10369 Small subunit of acetolactate synthase KQ253_18360 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KQ253_18360 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KQ253_18365 PF00563 EAL domain KQ253_18365 PF00990 Diguanylate cyclase, GGDEF domain KQ253_18365 PF03707 Bacterial signalling protein N terminal repeat KQ253_18375 PF13737 Transposase DDE domain KQ253_18390 PF16658 Class II release factor RF3, C-terminal domain KQ253_18390 PF03144 Elongation factor Tu domain 2 KQ253_18390 PF00009 Elongation factor Tu GTP binding domain KQ253_18405 PF01026 TatD related DNase KQ253_18410 PF00694 Aconitase C-terminal domain KQ253_18410 PF00330 Aconitase family (aconitate hydratase) KQ253_18420 PF00899 ThiF family KQ253_18430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_18430 PF03466 LysR substrate binding domain KQ253_18440 PF01207 Dihydrouridine synthase (Dus) KQ253_18445 PF07690 Major Facilitator Superfamily KQ253_18455 PF00892 EamA-like transporter family KQ253_18460 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KQ253_18460 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KQ253_18465 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KQ253_18470 PF02233 NAD(P) transhydrogenase beta subunit KQ253_18475 PF00106 short chain dehydrogenase KQ253_18485 PF01261 Xylose isomerase-like TIM barrel KQ253_18490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ253_18490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ253_18495 PF00378 Enoyl-CoA hydratase/isomerase KQ253_18500 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KQ253_18500 PF00072 Response regulator receiver domain KQ253_18500 PF01627 Hpt domain KQ253_18500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_18500 PF00672 HAMP domain KQ253_18500 PF00512 His Kinase A (phospho-acceptor) domain KQ253_18505 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_18515 PF05958 tRNA (Uracil-5-)-methyltransferase KQ253_18520 PF13291 ACT domain KQ253_18520 PF04607 Region found in RelA / SpoT proteins KQ253_18520 PF02824 TGS domain KQ253_18530 PF03819 MazG nucleotide pyrophosphohydrolase domain KQ253_18540 PF12626 Polymerase A arginine-rich C-terminus KQ253_18540 PF01743 Poly A polymerase head domain KQ253_18540 PF12627 Probable RNA and SrmB- binding site of polymerase A KQ253_18545 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KQ253_18550 PF02548 Ketopantoate hydroxymethyltransferase KQ253_18555 PF02569 Pantoate-beta-alanine ligase KQ253_18560 PF03668 P-loop ATPase protein family KQ253_18565 PF00381 PTS HPr component phosphorylation site KQ253_18570 PF04751 Protein of unknown function (DUF615) KQ253_18575 PF13193 AMP-binding enzyme C-terminal domain KQ253_18575 PF00501 AMP-binding enzyme KQ253_18580 PF03129 Anticodon binding domain KQ253_18580 PF02824 TGS domain KQ253_18580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ253_18580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KQ253_18585 PF00707 Translation initiation factor IF-3, C-terminal domain KQ253_18585 PF05198 Translation initiation factor IF-3, N-terminal domain KQ253_18590 PF00043 Glutathione S-transferase, C-terminal domain KQ253_18590 PF02798 Glutathione S-transferase, N-terminal domain KQ253_18595 PF09335 SNARE associated Golgi protein KQ253_18600 PF07690 Major Facilitator Superfamily KQ253_18605 PF01632 Ribosomal protein L35 KQ253_18610 PF00453 Ribosomal protein L20 KQ253_18625 PF01409 tRNA synthetases class II core domain (F) KQ253_18625 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KQ253_18630 PF03483 B3/4 domain KQ253_18630 PF03484 tRNA synthetase B5 domain KQ253_18630 PF03147 Ferredoxin-fold anticodon binding domain KQ253_18630 PF01588 Putative tRNA binding domain KQ253_18630 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KQ253_18635 PF00216 Bacterial DNA-binding protein KQ253_18650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ253_18650 PF07498 Rho termination factor, N-terminal domain KQ253_18650 PF07497 Rho termination factor, RNA-binding domain KQ253_18655 PF00085 Thioredoxin KQ253_18660 PF02541 Ppx/GppA phosphatase family KQ253_18665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KQ253_18670 PF09179 TilS substrate binding domain KQ253_18670 PF11734 TilS substrate C-terminal domain KQ253_18670 PF01171 PP-loop family KQ253_18675 PF14748 Pyrroline-5-carboxylate reductase dimerisation KQ253_18675 PF03807 NADP oxidoreductase coenzyme F420-dependent KQ253_18680 PF02325 YGGT family KQ253_18685 PF01367 5'-3' exonuclease, C-terminal SAM fold KQ253_18685 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KQ253_18685 PF00476 DNA polymerase family A KQ253_18685 PF01612 3'-5' exonuclease KQ253_18705 PF00437 Type II/IV secretion system protein KQ253_18710 PF02566 OsmC-like protein KQ253_18715 PF01047 MarR family KQ253_18725 PF00795 Carbon-nitrogen hydrolase KQ253_18770 PF00309 Sigma-54 factor, Activator interacting domain (AID) KQ253_18770 PF04963 Sigma-54 factor, core binding domain KQ253_18770 PF04552 Sigma-54, DNA binding domain KQ253_18775 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KQ253_18780 PF01722 BolA-like protein KQ253_18785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KQ253_18790 PF01634 ATP phosphoribosyltransferase KQ253_18795 PF00815 Histidinol dehydrogenase KQ253_18800 PF00155 Aminotransferase class I and II KQ253_18805 PF00425 chorismate binding enzyme KQ253_18805 PF04715 Anthranilate synthase component I, N terminal region KQ253_18845 PF00293 NUDIX domain KQ253_18850 PF00132 Bacterial transferase hexapeptide (six repeats) KQ253_18855 PF00814 Glycoprotease family KQ253_18860 PF04445 Putative SAM-dependent methyltransferase KQ253_18870 PF00756 Putative esterase KQ253_18880 PF00834 Ribulose-phosphate 3 epimerase family KQ253_18895 PF07732 Multicopper oxidase KQ253_18895 PF07731 Multicopper oxidase KQ253_18895 PF00394 Multicopper oxidase KQ253_18910 PF00893 Small Multidrug Resistance protein KQ253_18915 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KQ253_18915 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ253_18920 PF01960 ArgJ family KQ253_18925 PF02445 Quinolinate synthetase A protein KQ253_18950 PF00962 Adenosine/AMP deaminase KQ253_18955 PF08240 Alcohol dehydrogenase GroES-like domain KQ253_18955 PF00107 Zinc-binding dehydrogenase KQ253_18960 PF03466 LysR substrate binding domain KQ253_18960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_18965 PF02770 Acyl-CoA dehydrogenase, middle domain KQ253_18965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ253_18965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ253_18970 PF07690 Major Facilitator Superfamily KQ253_18975 PF02515 CoA-transferase family III KQ253_18990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_18990 PF03466 LysR substrate binding domain KQ253_19000 PF07690 Major Facilitator Superfamily KQ253_19005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_19005 PF03466 LysR substrate binding domain KQ253_19030 PF08267 Cobalamin-independent synthase, N-terminal domain KQ253_19030 PF01717 Cobalamin-independent synthase, Catalytic domain KQ253_19035 PF01613 Flavin reductase like domain KQ253_19050 PF17074 Darcynin, domain of unknown function KQ253_19060 PF06594 Haemolysin-type calcium binding protein related domain KQ253_19060 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) KQ253_19065 PF17074 Darcynin, domain of unknown function KQ253_19090 PF02567 Phenazine biosynthesis-like protein KQ253_19100 PF00268 Ribonucleotide reductase, small chain KQ253_19110 PF03477 ATP cone domain KQ253_19110 PF02867 Ribonucleotide reductase, barrel domain KQ253_19110 PF00317 Ribonucleotide reductase, all-alpha domain KQ253_19120 PF00072 Response regulator receiver domain KQ253_19120 PF00486 Transcriptional regulatory protein, C terminal KQ253_19125 PF00512 His Kinase A (phospho-acceptor) domain KQ253_19125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ253_19125 PF00672 HAMP domain KQ253_19135 PF17151 Periplasmic sensor domain KQ253_19135 PF00990 Diguanylate cyclase, GGDEF domain KQ253_19140 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KQ253_19145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KQ253_19150 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KQ253_19150 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KQ253_19160 PF10531 SLBB domain KQ253_19160 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KQ253_19160 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KQ253_19165 PF00384 Molybdopterin oxidoreductase KQ253_19165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ253_19165 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KQ253_19170 PF00146 NADH dehydrogenase KQ253_19175 PF12838 4Fe-4S dicluster domain KQ253_19180 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KQ253_19185 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KQ253_19190 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KQ253_19190 PF00361 Proton-conducting membrane transporter KQ253_19195 PF00361 Proton-conducting membrane transporter KQ253_19200 PF00361 Proton-conducting membrane transporter KQ253_19210 PF00313 'Cold-shock' DNA-binding domain KQ253_19215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_19215 PF03466 LysR substrate binding domain KQ253_19220 PF00970 Oxidoreductase FAD-binding domain KQ253_19220 PF00175 Oxidoreductase NAD-binding domain KQ253_19235 PF05552 Conserved TM helix KQ253_19250 PF00291 Pyridoxal-phosphate dependent enzyme KQ253_19255 PF13533 Biotin-lipoyl like KQ253_19280 PF09334 tRNA synthetases class I (M) KQ253_19280 PF01588 Putative tRNA binding domain KQ253_19290 PF10609 NUBPL iron-transfer P-loop NTPase KQ253_19295 PF01048 Phosphorylase superfamily KQ253_19310 PF00692 dUTPase KQ253_19340 PF01207 Dihydrouridine synthase (Dus) KQ253_19350 PF02978 Signal peptide binding domain KQ253_19350 PF02881 SRP54-type protein, helical bundle domain KQ253_19350 PF00448 SRP54-type protein, GTPase domain KQ253_19355 PF03309 Type III pantothenate kinase KQ253_19365 PF01925 Sulfite exporter TauE/SafE KQ253_19375 PF06470 SMC proteins Flexible Hinge Domain KQ253_19375 PF02463 RecF/RecN/SMC N terminal domain KQ253_19385 PF03120 NAD-dependent DNA ligase OB-fold domain KQ253_19385 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KQ253_19385 PF12826 Helix-hairpin-helix motif KQ253_19385 PF00533 BRCA1 C Terminus (BRCT) domain KQ253_19385 PF01653 NAD-dependent DNA ligase adenylation domain KQ253_19390 PF00210 Ferritin-like domain KQ253_19395 PF07690 Major Facilitator Superfamily KQ253_19400 PF00982 Glycosyltransferase family 20 KQ253_19405 PF02358 Trehalose-phosphatase KQ253_19410 PF13936 Helix-turn-helix domain KQ253_19410 PF00665 Integrase core domain KQ253_19415 PF08241 Methyltransferase domain KQ253_19415 PF12697 Alpha/beta hydrolase family KQ253_19420 PF00202 Aminotransferase class-III KQ253_19420 PF06968 Biotin and Thiamin Synthesis associated domain KQ253_19420 PF04055 Radical SAM superfamily KQ253_19425 PF00155 Aminotransferase class I and II KQ253_19440 PF01479 S4 domain KQ253_19440 PF00849 RNA pseudouridylate synthase KQ253_19445 PF04079 Segregation and condensation complex subunit ScpB KQ253_19450 PF02616 Segregation and condensation protein ScpA KQ253_19455 PF01300 Telomere recombination KQ253_19460 PF04315 Elongation factor P hydroxylase KQ253_19465 PF02620 Large ribosomal RNA subunit accumulation protein YceD KQ253_19470 PF01783 Ribosomal L32p protein family KQ253_19475 PF00698 Acyl transferase domain KQ253_19485 PF00550 Phosphopantetheine attachment site KQ253_19490 PF04972 BON domain KQ253_19490 PF01476 LysM domain KQ253_19495 PF08543 Phosphomethylpyrimidine kinase KQ253_19495 PF03070 TENA/THI-4/PQQC family KQ253_19495 PF02581 Thiamine monophosphate synthase KQ253_19505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KQ253_19520 PF02261 Aspartate decarboxylase KQ253_19525 PF01195 Peptidyl-tRNA hydrolase KQ253_19530 PF01386 Ribosomal L25p family KQ253_19535 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KQ253_19535 PF14572 Phosphoribosyl synthetase-associated domain KQ253_19560 PF00288 GHMP kinases N terminal domain KQ253_19560 PF08544 GHMP kinases C terminal KQ253_19565 PF03550 Outer membrane lipoprotein LolB KQ253_19575 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KQ253_19575 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KQ253_19575 PF01488 Shikimate / quinate 5-dehydrogenase KQ253_19580 PF08278 DNA primase DnaG DnaB-binding KQ253_19580 PF08275 DNA primase catalytic core, N-terminal domain KQ253_19580 PF01807 CHC2 zinc finger KQ253_19580 PF10410 DnaB-helicase binding domain of primase KQ253_19585 PF13525 Outer membrane lipoprotein KQ253_19590 PF01479 S4 domain KQ253_19590 PF00849 RNA pseudouridylate synthase KQ253_19595 PF02578 Multi-copper polyphenol oxidoreductase laccase KQ253_19600 PF03358 NADPH-dependent FMN reductase KQ253_19605 PF01668 SmpB protein KQ253_19710 PF03796 DnaB-like helicase C terminal domain KQ253_19710 PF00772 DnaB-like helicase N terminal domain KQ253_19940 PF01476 LysM domain KQ253_19940 PF08525 Opacity-associated protein A N-terminal motif KQ253_19940 PF01551 Peptidase family M23 KQ253_19985 PF00589 Phage integrase family KQ253_19985 PF13356 Arm DNA-binding domain KQ253_19990 PF01467 Cytidylyltransferase-like KQ253_19995 PF00037 4Fe-4S binding domain KQ253_20015 PF03466 LysR substrate binding domain KQ253_20015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ253_20020 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ253_20025 PF02028 BCCT, betaine/carnitine/choline family transporter KQ253_20030 PF07859 alpha/beta hydrolase fold KQ253_20035 PF00355 Rieske [2Fe-2S] domain KQ253_20035 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ253_20040 PF00171 Aldehyde dehydrogenase family KQ253_20045 PF00970 Oxidoreductase FAD-binding domain KQ253_20045 PF00175 Oxidoreductase NAD-binding domain KQ253_20045 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ253_20060 PF02540 NAD synthase KQ253_20060 PF00795 Carbon-nitrogen hydrolase KQ253_20070 PF05726 Pirin C-terminal cupin domain KQ253_20070 PF02678 Pirin KQ253_20075 PF03653 Uncharacterised protein family (UPF0093) KQ253_20080 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ253_20080 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ253_20090 PF00164 Ribosomal protein S12/S23 KQ253_20095 PF00177 Ribosomal protein S7p/S5e KQ253_20100 PF03144 Elongation factor Tu domain 2 KQ253_20100 PF00009 Elongation factor Tu GTP binding domain KQ253_20100 PF03764 Elongation factor G, domain IV KQ253_20100 PF14492 Elongation Factor G, domain II KQ253_20100 PF00679 Elongation factor G C-terminus KQ253_20105 PF03144 Elongation factor Tu domain 2 KQ253_20105 PF00009 Elongation factor Tu GTP binding domain KQ253_20105 PF03143 Elongation factor Tu C-terminal domain KQ253_20120 PF00583 Acetyltransferase (GNAT) family KQ253_20125 PF04376 Arginine-tRNA-protein transferase, N terminus KQ253_20125 PF04377 Arginine-tRNA-protein transferase, C terminus KQ253_20130 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KQ253_20135 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ253_20140 PF17854 FtsK alpha domain KQ253_20140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KQ253_20140 PF01580 FtsK/SpoIIIE family KQ253_20140 PF09397 Ftsk gamma domain KQ253_20145 PF01810 LysE type translocator KQ253_20155 PF03776 Septum formation topological specificity factor MinE KQ253_20160 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KQ253_20165 PF03775 Septum formation inhibitor MinC, C-terminal domain KQ253_20175 PF01553 Acyltransferase KQ253_20180 PF13488 Glycine zipper KQ253_20180 PF00691 OmpA family KQ253_20185 PF00580 UvrD/REP helicase N-terminal domain KQ253_20185 PF13361 UvrD-like helicase C-terminal domain KQ253_20190 PF00692 dUTPase KQ253_20195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ253_20195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ253_20195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ253_20195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ253_20200 PF00696 Amino acid kinase family KQ253_20210 PF13230 Glutamine amidotransferases class-II KQ253_20215 PF01814 Hemerythrin HHE cation binding domain KQ253_20225 PF03658 RnfH family Ubiquitin KQ253_20230 PF04355 SmpA / OmlA family KQ253_20235 PF01475 Ferric uptake regulator family KQ253_20240 PF00437 Type II/IV secretion system protein KQ253_20245 PF00437 Type II/IV secretion system protein KQ253_20250 PF01168 Alanine racemase, N-terminal domain KQ253_20260 PF12320 Type 5 capsule protein repressor C-terminal domain KQ253_20260 PF00149 Calcineurin-like phosphoesterase KQ253_20280 PF01370 NAD dependent epimerase/dehydratase family KQ253_20280 PF08338 Domain of unknown function (DUF1731) KQ253_20285 PF01266 FAD dependent oxidoreductase KQ253_20290 PF00490 Delta-aminolevulinic acid dehydratase KQ253_20295 PF03061 Thioesterase superfamily KQ253_20300 PF13533 Biotin-lipoyl like KQ253_20305 PF07690 Major Facilitator Superfamily KQ253_20380 PF00929 Exonuclease KQ253_20465 PF00145 C-5 cytosine-specific DNA methylase KQ253_20475 PF01695 IstB-like ATP binding protein KQ253_20505 PF01051 Initiator Replication protein KQ253_20520 PF13610 DDE domain KQ253_20545 PF13610 DDE domain