locus-tag class description KQ252_00005 PF00375 Sodium:dicarboxylate symporter family KQ252_00010 PF00155 Aminotransferase class I and II KQ252_00015 PF01641 SelR domain KQ252_00020 PF00255 Glutathione peroxidase KQ252_00025 PF12852 Cupin KQ252_00025 PF12833 Helix-turn-helix domain KQ252_00035 PF00155 Aminotransferase class I and II KQ252_00040 PF01909 Nucleotidyltransferase domain KQ252_00040 PF01966 HD domain KQ252_00040 PF08335 GlnD PII-uridylyltransferase KQ252_00045 PF02222 ATP-grasp domain KQ252_00055 PF05437 Branched-chain amino acid transport protein (AzlD) KQ252_00060 PF03591 AzlC protein KQ252_00085 PF01926 50S ribosome-binding GTPase KQ252_00085 PF06071 Protein of unknown function (DUF933) KQ252_00090 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_00095 PF00005 ABC transporter KQ252_00095 PF09383 NIL domain KQ252_00100 PF03180 NLPA lipoprotein KQ252_00105 PF03180 NLPA lipoprotein KQ252_00110 PF00296 Luciferase-like monooxygenase KQ252_00120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_00120 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ252_00135 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_00140 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_00145 PF00005 ABC transporter KQ252_00155 PF01037 Lrp/AsnC ligand binding domain KQ252_00160 PF01709 Transcriptional regulator KQ252_00170 PF00440 Bacterial regulatory proteins, tetR family KQ252_00190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_00190 PF03466 LysR substrate binding domain KQ252_00200 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ252_00210 PF00892 EamA-like transporter family KQ252_00230 PF00577 Outer membrane usher protein KQ252_00230 PF13953 PapC C-terminal domain KQ252_00230 PF13954 PapC N-terminal domain KQ252_00235 PF02753 Pili assembly chaperone PapD, C-terminal domain KQ252_00235 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KQ252_00240 PF16970 Type-1 fimbrial protein, A KQ252_00255 PF06968 Biotin and Thiamin Synthesis associated domain KQ252_00255 PF04055 Radical SAM superfamily KQ252_00260 PF08331 Domain of unknown function (DUF1730) KQ252_00265 PF01256 Carbohydrate kinase KQ252_00265 PF03853 YjeF-related protein N-terminus KQ252_00270 PF02075 Crossover junction endodeoxyribonuclease RuvC KQ252_00285 PF00905 Penicillin binding protein transpeptidase domain KQ252_00305 PF00438 S-adenosylmethionine synthetase, N-terminal domain KQ252_00305 PF02772 S-adenosylmethionine synthetase, central domain KQ252_00305 PF02773 S-adenosylmethionine synthetase, C-terminal domain KQ252_00310 PF02779 Transketolase, pyrimidine binding domain KQ252_00310 PF00456 Transketolase, thiamine diphosphate binding domain KQ252_00310 PF02780 Transketolase, C-terminal domain KQ252_00320 PF04264 YceI-like domain KQ252_00330 PF09992 Phosphodiester glycosidase KQ252_00340 PF05958 tRNA (Uracil-5-)-methyltransferase KQ252_00345 PF04229 GrpB protein KQ252_00350 PF00171 Aldehyde dehydrogenase family KQ252_00350 PF01619 Proline dehydrogenase KQ252_00350 PF14850 DNA-binding domain of Proline dehydrogenase KQ252_00350 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KQ252_00355 PF01037 Lrp/AsnC ligand binding domain KQ252_00360 PF00474 Sodium:solute symporter family KQ252_00365 PF02146 Sir2 family KQ252_00370 PF01597 Glycine cleavage H-protein KQ252_00375 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ252_00375 PF12833 Helix-turn-helix domain KQ252_00385 PF00005 ABC transporter KQ252_00385 PF00664 ABC transporter transmembrane region KQ252_00390 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KQ252_00395 PF06912 Protein of unknown function (DUF1275) KQ252_00400 PF00375 Sodium:dicarboxylate symporter family KQ252_00415 PF08007 Cupin superfamily protein KQ252_00420 PF02545 Maf-like protein KQ252_00430 PF00162 Phosphoglycerate kinase KQ252_00440 PF01116 Fructose-bisphosphate aldolase class-II KQ252_00445 PF00639 PPIC-type PPIASE domain KQ252_00445 PF09312 SurA N-terminal domain KQ252_00450 PF04453 LPS transport system D KQ252_00450 PF03968 OstA-like protein KQ252_00455 PF01636 Phosphotransferase enzyme family KQ252_00460 PF00483 Nucleotidyl transferase KQ252_00465 PF02527 rRNA small subunit methyltransferase G KQ252_00470 PF13614 AAA domain KQ252_00475 PF17762 HTH domain found in ParB protein KQ252_00475 PF02195 ParB-like nuclease domain KQ252_00480 PF01618 MotA/TolQ/ExbB proton channel family KQ252_00490 PF00664 ABC transporter transmembrane region KQ252_00490 PF00005 ABC transporter KQ252_00495 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KQ252_00500 PF02348 Cytidylyltransferase KQ252_00505 PF09115 DNA polymerase III, delta subunit, C terminal KQ252_00515 PF01026 TatD related DNase KQ252_00530 PF07963 Prokaryotic N-terminal methylation motif KQ252_00530 PF02501 Type II secretion system (T2SS), protein I KQ252_00535 PF07963 Prokaryotic N-terminal methylation motif KQ252_00535 PF11612 Type II secretion system (T2SS), protein J KQ252_00540 PF03934 Type II secretion system (T2SS), protein K KQ252_00550 PF03167 Uracil DNA glycosylase superfamily KQ252_00560 PF14437 MafB19-like deaminase KQ252_00570 PF02224 Cytidylate kinase KQ252_00575 PF00575 S1 RNA binding domain KQ252_00580 PF00216 Bacterial DNA-binding protein KQ252_00590 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KQ252_00600 PF00743 Flavin-binding monooxygenase-like KQ252_00610 PF03969 AFG1-like ATPase KQ252_00615 PF01274 Malate synthase KQ252_00625 PF02472 Biopolymer transport protein ExbD/TolR KQ252_00630 PF02472 Biopolymer transport protein ExbD/TolR KQ252_00635 PF01618 MotA/TolQ/ExbB proton channel family KQ252_00645 PF07715 TonB-dependent Receptor Plug Domain KQ252_00645 PF00593 TonB dependent receptor KQ252_00665 PF01432 Peptidase family M3 KQ252_00670 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_00675 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_00680 PF00005 ABC transporter KQ252_00680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KQ252_00695 PF00459 Inositol monophosphatase family KQ252_00705 PF01649 Ribosomal protein S20 KQ252_00710 PF13460 NAD(P)H-binding KQ252_00715 PF03737 Aldolase/RraA KQ252_00735 PF00270 DEAD/DEAH box helicase KQ252_00735 PF00271 Helicase conserved C-terminal domain KQ252_00735 PF03461 TRCF domain KQ252_00735 PF02559 CarD-like/TRCF domain KQ252_00735 PF17757 UvrB interaction domain KQ252_00745 PF00211 Adenylate and Guanylate cyclase catalytic domain KQ252_00750 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_00755 PF00012 Hsp70 protein KQ252_00760 PF07743 HSCB C-terminal oligomerisation domain KQ252_00760 PF00226 DnaJ domain KQ252_00765 PF01521 Iron-sulphur cluster biosynthesis KQ252_00770 PF01592 NifU-like N terminal domain KQ252_00775 PF00266 Aminotransferase class-V KQ252_00780 PF02082 Transcriptional regulator KQ252_00795 PF00216 Bacterial DNA-binding protein KQ252_00800 PF09312 SurA N-terminal domain KQ252_00800 PF00639 PPIC-type PPIASE domain KQ252_00805 PF12833 Helix-turn-helix domain KQ252_00805 PF12852 Cupin KQ252_00810 PF00487 Fatty acid desaturase KQ252_00815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_00815 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_00815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_00820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_00820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_00820 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_00825 PF03109 ABC1 family KQ252_00835 PF04073 Aminoacyl-tRNA editing domain KQ252_00840 PF06276 Ferric iron reductase FhuF-like transporter KQ252_00840 PF04183 IucA / IucC family KQ252_00845 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KQ252_00850 PF07690 Major Facilitator Superfamily KQ252_00855 PF04183 IucA / IucC family KQ252_00855 PF06276 Ferric iron reductase FhuF-like transporter KQ252_00860 PF06276 Ferric iron reductase FhuF-like transporter KQ252_00860 PF04183 IucA / IucC family KQ252_00875 PF07715 TonB-dependent Receptor Plug Domain KQ252_00875 PF00593 TonB dependent receptor KQ252_00900 PF13419 Haloacid dehalogenase-like hydrolase KQ252_00910 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KQ252_00915 PF02277 Phosphoribosyltransferase KQ252_00920 PF00300 Histidine phosphatase superfamily (branch 1) KQ252_00930 PF02654 Cobalamin-5-phosphate synthase KQ252_00935 PF00793 DAHP synthetase I family KQ252_00940 PF01925 Sulfite exporter TauE/SafE KQ252_00960 PF07715 TonB-dependent Receptor Plug Domain KQ252_00960 PF00593 TonB dependent receptor KQ252_00965 PF02684 Lipid-A-disaccharide synthetase KQ252_00980 PF00005 ABC transporter KQ252_01015 PF01230 HIT domain KQ252_01045 PF08241 Methyltransferase domain KQ252_01050 PF00561 alpha/beta hydrolase fold KQ252_01055 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ252_01065 PF02575 YbaB/EbfC DNA-binding family KQ252_01070 PF13662 Toprim domain KQ252_01070 PF02132 RecR protein KQ252_01075 PF00570 HRDC domain KQ252_01075 PF01612 3'-5' exonuclease KQ252_01095 PF05166 YcgL domain KQ252_01105 PF01434 Peptidase family M41 KQ252_01105 PF17862 AAA+ lid domain KQ252_01105 PF00004 ATPase family associated with various cellular activities (AAA) KQ252_01115 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_01120 PF05175 Methyltransferase small domain KQ252_01125 PF01264 Chorismate synthase KQ252_01130 PF00990 Diguanylate cyclase, GGDEF domain KQ252_01130 PF08448 PAS fold KQ252_01145 PF04055 Radical SAM superfamily KQ252_01150 PF00676 Dehydrogenase E1 component KQ252_01155 PF02779 Transketolase, pyrimidine binding domain KQ252_01155 PF02780 Transketolase, C-terminal domain KQ252_01160 PF02817 e3 binding domain KQ252_01160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ252_01160 PF00364 Biotin-requiring enzyme KQ252_01165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ252_01165 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_01170 PF00106 short chain dehydrogenase KQ252_01175 PF08240 Alcohol dehydrogenase GroES-like domain KQ252_01175 PF00107 Zinc-binding dehydrogenase KQ252_01180 PF01062 Bestrophin, RFP-TM, chloride channel KQ252_01185 PF02954 Bacterial regulatory protein, Fis family KQ252_01185 PF00072 Response regulator receiver domain KQ252_01185 PF00158 Sigma-54 interaction domain KQ252_01190 PF00753 Metallo-beta-lactamase superfamily KQ252_01190 PF04273 Putative phosphatase (DUF442) KQ252_01195 PF04273 Putative phosphatase (DUF442) KQ252_01195 PF00753 Metallo-beta-lactamase superfamily KQ252_01200 PF01925 Sulfite exporter TauE/SafE KQ252_01215 PF06445 GyrI-like small molecule binding domain KQ252_01215 PF12833 Helix-turn-helix domain KQ252_01220 PF01638 HxlR-like helix-turn-helix KQ252_01225 PF02525 Flavodoxin-like fold KQ252_01235 PF07702 UTRA domain KQ252_01235 PF00392 Bacterial regulatory proteins, gntR family KQ252_01250 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KQ252_01255 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_01260 PF00005 ABC transporter KQ252_01275 PF00083 Sugar (and other) transporter KQ252_01280 PF07715 TonB-dependent Receptor Plug Domain KQ252_01280 PF00593 TonB dependent receptor KQ252_01285 PF10415 Fumarase C C-terminus KQ252_01285 PF00206 Lyase KQ252_01300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_01300 PF03466 LysR substrate binding domain KQ252_01305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_01305 PF03466 LysR substrate binding domain KQ252_01310 PF02803 Thiolase, C-terminal domain KQ252_01310 PF00108 Thiolase, N-terminal domain KQ252_01315 PF02667 Short chain fatty acid transporter KQ252_01320 PF01144 Coenzyme A transferase KQ252_01325 PF01144 Coenzyme A transferase KQ252_01330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_01330 PF03466 LysR substrate binding domain KQ252_01350 PF06719 AraC-type transcriptional regulator N-terminus KQ252_01350 PF12833 Helix-turn-helix domain KQ252_01355 PF07690 Major Facilitator Superfamily KQ252_01360 PF01738 Dienelactone hydrolase family KQ252_01375 PF01613 Flavin reductase like domain KQ252_01385 PF14525 AraC-binding-like domain KQ252_01385 PF12833 Helix-turn-helix domain KQ252_01390 PF00970 Oxidoreductase FAD-binding domain KQ252_01390 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_01390 PF00175 Oxidoreductase NAD-binding domain KQ252_01395 PF00866 Ring hydroxylating beta subunit KQ252_01400 PF00355 Rieske [2Fe-2S] domain KQ252_01400 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ252_01405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_01405 PF03459 TOBE domain KQ252_01415 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_01420 PF00005 ABC transporter KQ252_01420 PF03459 TOBE domain KQ252_01425 PF00106 short chain dehydrogenase KQ252_01430 PF00857 Isochorismatase family KQ252_01430 PF00550 Phosphopantetheine attachment site KQ252_01440 PF00149 Calcineurin-like phosphoesterase KQ252_01445 PF02503 Polyphosphate kinase middle domain KQ252_01445 PF13090 Polyphosphate kinase C-terminal domain 2 KQ252_01445 PF17941 Polyphosphate kinase C-terminal domain 1 KQ252_01445 PF13089 Polyphosphate kinase N-terminal domain KQ252_01450 PF08042 PqqA family KQ252_01455 PF12706 Beta-lactamase superfamily domain KQ252_01460 PF03070 TENA/THI-4/PQQC family KQ252_01465 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KQ252_01470 PF04055 Radical SAM superfamily KQ252_01470 PF13186 Iron-sulfur cluster-binding domain KQ252_01475 PF01244 Membrane dipeptidase (Peptidase family M19) KQ252_01495 PF13091 PLD-like domain KQ252_01510 PF00199 Catalase KQ252_01520 PF00107 Zinc-binding dehydrogenase KQ252_01520 PF08240 Alcohol dehydrogenase GroES-like domain KQ252_01530 PF00419 Fimbrial protein KQ252_01535 PF13953 PapC C-terminal domain KQ252_01535 PF13954 PapC N-terminal domain KQ252_01535 PF00577 Outer membrane usher protein KQ252_01540 PF02753 Pili assembly chaperone PapD, C-terminal domain KQ252_01540 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KQ252_01545 PF16970 Type-1 fimbrial protein, A KQ252_01555 PF00005 ABC transporter KQ252_01555 PF17755 UvrA DNA-binding domain KQ252_01555 PF17760 UvrA interaction domain KQ252_01560 PF00873 AcrB/AcrD/AcrF family KQ252_01565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ252_01565 PF00529 HlyD membrane-fusion protein of T1SS KQ252_01570 PF00486 Transcriptional regulatory protein, C terminal KQ252_01570 PF00072 Response regulator receiver domain KQ252_01575 PF16527 Two-component sensor protein CpxA, periplasmic domain KQ252_01575 PF00672 HAMP domain KQ252_01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_01575 PF00512 His Kinase A (phospho-acceptor) domain KQ252_01585 PF02311 AraC-like ligand binding domain KQ252_01585 PF12833 Helix-turn-helix domain KQ252_01590 PF12146 Serine aminopeptidase, S33 KQ252_01620 PF13005 zinc-finger binding domain of transposase IS66 KQ252_01620 PF13817 IS66 C-terminal element KQ252_01620 PF03050 Transposase IS66 family KQ252_01620 PF13007 Transposase C of IS166 homeodomain KQ252_01635 PF13737 Transposase DDE domain KQ252_01645 PF07690 Major Facilitator Superfamily KQ252_01650 PF00920 Dehydratase family KQ252_01655 PF07729 FCD domain KQ252_01655 PF00392 Bacterial regulatory proteins, gntR family KQ252_01665 PF03466 LysR substrate binding domain KQ252_01665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_01670 PF13378 Enolase C-terminal domain-like KQ252_01670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KQ252_01675 PF02426 Muconolactone delta-isomerase KQ252_01680 PF04444 Catechol dioxygenase N terminus KQ252_01680 PF00775 Dioxygenase KQ252_01685 PF01144 Coenzyme A transferase KQ252_01690 PF01144 Coenzyme A transferase KQ252_01695 PF02803 Thiolase, C-terminal domain KQ252_01695 PF00108 Thiolase, N-terminal domain KQ252_01700 PF12146 Serine aminopeptidase, S33 KQ252_01705 PF01804 Penicillin amidase KQ252_01710 PF00171 Aldehyde dehydrogenase family KQ252_01725 PF02311 AraC-like ligand binding domain KQ252_01725 PF12833 Helix-turn-helix domain KQ252_01730 PF01613 Flavin reductase like domain KQ252_01735 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_01735 PF00175 Oxidoreductase NAD-binding domain KQ252_01750 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ252_01750 PF00355 Rieske [2Fe-2S] domain KQ252_01765 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ252_01770 PF01425 Amidase KQ252_01780 PF07690 Major Facilitator Superfamily KQ252_01790 PF00106 short chain dehydrogenase KQ252_01805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_01805 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_01805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_01810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_01810 PF03466 LysR substrate binding domain KQ252_01815 PF01614 Bacterial transcriptional regulator KQ252_01815 PF09339 IclR helix-turn-helix domain KQ252_01820 PF00753 Metallo-beta-lactamase superfamily KQ252_01830 PF04143 Sulphur transport KQ252_01840 PF01011 PQQ enzyme repeat KQ252_01840 PF13360 PQQ-like domain KQ252_01845 PF04966 Carbohydrate-selective porin, OprB family KQ252_01850 PF05048 Periplasmic copper-binding protein (NosD) KQ252_01855 PF01487 Type I 3-dehydroquinase KQ252_01860 PF00775 Dioxygenase KQ252_01865 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KQ252_01865 PF00775 Dioxygenase KQ252_01870 PF02627 Carboxymuconolactone decarboxylase family KQ252_01875 PF07690 Major Facilitator Superfamily KQ252_01880 PF00561 alpha/beta hydrolase fold KQ252_01885 PF00206 Lyase KQ252_01885 PF10397 Adenylosuccinate lyase C-terminus KQ252_01890 PF00108 Thiolase, N-terminal domain KQ252_01890 PF02803 Thiolase, C-terminal domain KQ252_01895 PF01144 Coenzyme A transferase KQ252_01900 PF01144 Coenzyme A transferase KQ252_01905 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KQ252_01910 PF04977 Septum formation initiator KQ252_01915 PF04239 Protein of unknown function (DUF421) KQ252_01920 PF03952 Enolase, N-terminal domain KQ252_01920 PF00113 Enolase, C-terminal TIM barrel domain KQ252_01925 PF00793 DAHP synthetase I family KQ252_01930 PF06418 CTP synthase N-terminus KQ252_01930 PF00117 Glutamine amidotransferase class-I KQ252_01960 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_01960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ252_01975 PF00793 DAHP synthetase I family KQ252_01980 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KQ252_01985 PF17871 AAA lid domain KQ252_01985 PF02861 Clp amino terminal domain, pathogenicity island component KQ252_01985 PF10431 C-terminal, D2-small domain, of ClpB protein KQ252_01985 PF00004 ATPase family associated with various cellular activities (AAA) KQ252_01985 PF07724 AAA domain (Cdc48 subfamily) KQ252_01990 PF02617 ATP-dependent Clp protease adaptor protein ClpS KQ252_02000 PF01118 Semialdehyde dehydrogenase, NAD binding domain KQ252_02000 PF02774 Semialdehyde dehydrogenase, dimerisation domain KQ252_02015 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KQ252_02020 PF00585 C-terminal regulatory domain of Threonine dehydratase KQ252_02020 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_02025 PF02254 TrkA-N domain KQ252_02025 PF02080 TrkA-C domain KQ252_02030 PF02386 Cation transport protein KQ252_02035 PF02253 Phospholipase A1 KQ252_02040 PF00675 Insulinase (Peptidase family M16) KQ252_02040 PF05193 Peptidase M16 inactive domain KQ252_02040 PF08367 Peptidase M16C associated KQ252_02045 PF00593 TonB dependent receptor KQ252_02045 PF07715 TonB-dependent Receptor Plug Domain KQ252_02050 PF00294 pfkB family carbohydrate kinase KQ252_02060 PF07290 Protein of unknown function (DUF1449) KQ252_02065 PF13936 Helix-turn-helix domain KQ252_02065 PF00665 Integrase core domain KQ252_02075 PF01654 Cytochrome bd terminal oxidase subunit I KQ252_02080 PF02322 Cytochrome bd terminal oxidase subunit II KQ252_02085 PF08173 Membrane bound YbgT-like protein KQ252_02100 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KQ252_02110 PF00448 SRP54-type protein, GTPase domain KQ252_02110 PF02881 SRP54-type protein, helical bundle domain KQ252_02135 PF00571 CBS domain KQ252_02135 PF00478 IMP dehydrogenase / GMP reductase domain KQ252_02140 PF00202 Aminotransferase class-III KQ252_02145 PF00462 Glutaredoxin KQ252_02155 PF03466 LysR substrate binding domain KQ252_02155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_02160 PF00557 Metallopeptidase family M24 KQ252_02165 PF05525 Branched-chain amino acid transport protein KQ252_02190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KQ252_02190 PF00381 PTS HPr component phosphorylation site KQ252_02190 PF02896 PEP-utilising enzyme, TIM barrel domain KQ252_02190 PF00391 PEP-utilising enzyme, mobile domain KQ252_02190 PF05524 PEP-utilising enzyme, N-terminal KQ252_02195 PF00294 pfkB family carbohydrate kinase KQ252_02200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KQ252_02200 PF02378 Phosphotransferase system, EIIC KQ252_02220 PF03707 Bacterial signalling protein N terminal repeat KQ252_02220 PF00990 Diguanylate cyclase, GGDEF domain KQ252_02220 PF00563 EAL domain KQ252_02230 PF07995 Glucose / Sorbosone dehydrogenase KQ252_02235 PF02586 SOS response associated peptidase (SRAP) KQ252_02240 PF03050 Transposase IS66 family KQ252_02240 PF13817 IS66 C-terminal element KQ252_02240 PF13007 Transposase C of IS166 homeodomain KQ252_02240 PF13005 zinc-finger binding domain of transposase IS66 KQ252_02255 PF01740 STAS domain KQ252_02255 PF00916 Sulfate permease family KQ252_02260 PF05922 Peptidase inhibitor I9 KQ252_02260 PF00082 Subtilase family KQ252_02270 PF00324 Amino acid permease KQ252_02275 PF00266 Aminotransferase class-V KQ252_02280 PF01037 Lrp/AsnC ligand binding domain KQ252_02305 PF13419 Haloacid dehalogenase-like hydrolase KQ252_02310 PF01479 S4 domain KQ252_02315 PF00154 recA bacterial DNA recombination protein KQ252_02320 PF02631 RecX family KQ252_02335 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KQ252_02335 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_02340 PF07977 FabA-like domain KQ252_02345 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_02345 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KQ252_02355 PF01103 Surface antigen KQ252_02355 PF07244 Surface antigen variable number repeat KQ252_02360 PF13180 PDZ domain KQ252_02360 PF17820 PDZ domain KQ252_02360 PF02163 Peptidase family M50 KQ252_02365 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KQ252_02365 PF13288 DXP reductoisomerase C-terminal domain KQ252_02365 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KQ252_02375 PF01255 Putative undecaprenyl diphosphate synthase KQ252_02380 PF01765 Ribosome recycling factor KQ252_02385 PF00696 Amino acid kinase family KQ252_02390 PF04055 Radical SAM superfamily KQ252_02390 PF18693 TRAM domain KQ252_02390 PF00919 Uncharacterized protein family UPF0004 KQ252_02395 PF00512 His Kinase A (phospho-acceptor) domain KQ252_02395 PF00989 PAS fold KQ252_02395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_02400 PF02954 Bacterial regulatory protein, Fis family KQ252_02400 PF00072 Response regulator receiver domain KQ252_02400 PF00158 Sigma-54 interaction domain KQ252_02405 PF00440 Bacterial regulatory proteins, tetR family KQ252_02410 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KQ252_02410 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KQ252_02420 PF02542 YgbB family KQ252_02430 PF01266 FAD dependent oxidoreductase KQ252_02450 PF10415 Fumarase C C-terminus KQ252_02450 PF00206 Lyase KQ252_02455 PF16363 GDP-mannose 4,6 dehydratase KQ252_02460 PF02635 DsrE/DsrF-like family KQ252_02480 PF00892 EamA-like transporter family KQ252_02485 PF00392 Bacterial regulatory proteins, gntR family KQ252_02485 PF00155 Aminotransferase class I and II KQ252_02490 PF01638 HxlR-like helix-turn-helix KQ252_02495 PF03454 MoeA C-terminal region (domain IV) KQ252_02495 PF00994 Probable molybdopterin binding domain KQ252_02495 PF03453 MoeA N-terminal region (domain I and II) KQ252_02500 PF00994 Probable molybdopterin binding domain KQ252_02500 PF01967 MoaC family KQ252_02505 PF02391 MoaE protein KQ252_02515 PF04055 Radical SAM superfamily KQ252_02515 PF06463 Molybdenum Cofactor Synthesis C KQ252_02520 PF00384 Molybdopterin oxidoreductase KQ252_02520 PF01568 Molydopterin dinucleotide binding domain KQ252_02520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ252_02525 PF12804 MobA-like NTP transferase domain KQ252_02530 PF00384 Molybdopterin oxidoreductase KQ252_02530 PF01568 Molydopterin dinucleotide binding domain KQ252_02530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ252_02530 PF04324 BFD-like [2Fe-2S] binding domain KQ252_02535 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ252_02535 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ252_02535 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_02535 PF18267 Rubredoxin NAD+ reductase C-terminal domain KQ252_02535 PF04324 BFD-like [2Fe-2S] binding domain KQ252_02540 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ252_02540 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_02540 PF13806 Rieske-like [2Fe-2S] domain KQ252_02540 PF18267 Rubredoxin NAD+ reductase C-terminal domain KQ252_02540 PF04324 BFD-like [2Fe-2S] binding domain KQ252_02540 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ252_02550 PF00486 Transcriptional regulatory protein, C terminal KQ252_02550 PF00072 Response regulator receiver domain KQ252_02555 PF00005 ABC transporter KQ252_02560 PF13438 Domain of unknown function (DUF4113) KQ252_02560 PF11799 impB/mucB/samB family C-terminal domain KQ252_02560 PF00817 impB/mucB/samB family KQ252_02565 PF01220 Dehydroquinase class II KQ252_02570 PF00364 Biotin-requiring enzyme KQ252_02575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ252_02575 PF00289 Biotin carboxylase, N-terminal domain KQ252_02575 PF02785 Biotin carboxylase C-terminal domain KQ252_02585 PF12832 MFS_1 like family KQ252_02600 PF13737 Transposase DDE domain KQ252_02710 PF00712 DNA polymerase III beta subunit, N-terminal domain KQ252_02710 PF02767 DNA polymerase III beta subunit, central domain KQ252_02710 PF02768 DNA polymerase III beta subunit, C-terminal domain KQ252_02750 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KQ252_02940 PF13737 Transposase DDE domain KQ252_02955 PF01695 IstB-like ATP binding protein KQ252_02965 PF00145 C-5 cytosine-specific DNA methylase KQ252_03050 PF00929 Exonuclease KQ252_03110 PF01645 Conserved region in glutamate synthase KQ252_03125 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KQ252_03125 PF01565 FAD binding domain KQ252_03130 PF01451 Low molecular weight phosphotyrosine protein phosphatase KQ252_03140 PF00465 Iron-containing alcohol dehydrogenase KQ252_03145 PF03061 Thioesterase superfamily KQ252_03150 PF04185 Phosphoesterase family KQ252_03150 PF05506 Domain of unknown function (DUF756) KQ252_03160 PF12169 DNA polymerase III subunits gamma and tau domain III KQ252_03160 PF12170 DNA polymerase III tau subunit V interacting with alpha KQ252_03160 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KQ252_03165 PF07690 Major Facilitator Superfamily KQ252_03175 PF00144 Beta-lactamase KQ252_03180 PF01575 MaoC like domain KQ252_03190 PF02803 Thiolase, C-terminal domain KQ252_03190 PF00108 Thiolase, N-terminal domain KQ252_03200 PF03466 LysR substrate binding domain KQ252_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_03205 PF00923 Transaldolase/Fructose-6-phosphate aldolase KQ252_03210 PF01810 LysE type translocator KQ252_03215 PF01037 Lrp/AsnC ligand binding domain KQ252_03220 PF03594 Benzoate membrane transport protein KQ252_03225 PF02308 MgtC family KQ252_03230 PF00690 Cation transporter/ATPase, N-terminus KQ252_03230 PF00689 Cation transporting ATPase, C-terminus KQ252_03250 PF00582 Universal stress protein family KQ252_03255 PF00005 ABC transporter KQ252_03255 PF12848 ABC transporter KQ252_03275 PF07715 TonB-dependent Receptor Plug Domain KQ252_03275 PF00593 TonB dependent receptor KQ252_03305 PF00924 Mechanosensitive ion channel KQ252_03310 PF07715 TonB-dependent Receptor Plug Domain KQ252_03310 PF00593 TonB dependent receptor KQ252_03320 PF13737 Transposase DDE domain KQ252_03325 PF01037 Lrp/AsnC ligand binding domain KQ252_03330 PF01817 Chorismate mutase type II KQ252_03360 PF13817 IS66 C-terminal element KQ252_03360 PF03050 Transposase IS66 family KQ252_03360 PF13005 zinc-finger binding domain of transposase IS66 KQ252_03360 PF13007 Transposase C of IS166 homeodomain KQ252_03375 PF13954 PapC N-terminal domain KQ252_03375 PF13953 PapC C-terminal domain KQ252_03375 PF00577 Outer membrane usher protein KQ252_03390 PF13737 Transposase DDE domain KQ252_03395 PF01433 Peptidase family M1 domain KQ252_03395 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KQ252_03395 PF11940 Domain of unknown function (DUF3458) Ig-like fold KQ252_03410 PF02110 Hydroxyethylthiazole kinase family KQ252_03420 PF14493 Helix-turn-helix domain KQ252_03420 PF05970 PIF1-like helicase KQ252_03425 PF00465 Iron-containing alcohol dehydrogenase KQ252_03440 PF00171 Aldehyde dehydrogenase family KQ252_03445 PF13520 Amino acid permease KQ252_03450 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KQ252_03455 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KQ252_03460 PF02540 NAD synthase KQ252_03460 PF00958 GMP synthase C terminal domain KQ252_03460 PF00117 Glutamine amidotransferase class-I KQ252_03465 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KQ252_03465 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ252_03470 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KQ252_03475 PF00149 Calcineurin-like phosphoesterase KQ252_03485 PF00881 Nitroreductase family KQ252_03495 PF17209 Hfq protein KQ252_03505 PF01119 DNA mismatch repair protein, C-terminal domain KQ252_03505 PF08676 MutL C terminal dimerisation domain KQ252_03510 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KQ252_03515 PF01479 S4 domain KQ252_03515 PF00849 RNA pseudouridylate synthase KQ252_03530 PF00849 RNA pseudouridylate synthase KQ252_03530 PF01479 S4 domain KQ252_03540 PF04284 Protein of unknown function (DUF441) KQ252_03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_03545 PF03466 LysR substrate binding domain KQ252_03560 PF07690 Major Facilitator Superfamily KQ252_03565 PF00027 Cyclic nucleotide-binding domain KQ252_03565 PF00520 Ion transport protein KQ252_03575 PF00330 Aconitase family (aconitate hydratase) KQ252_03575 PF06434 Aconitate hydratase 2 N-terminus KQ252_03575 PF11791 Aconitate B N-terminal domain KQ252_03590 PF01103 Surface antigen KQ252_03590 PF07244 Surface antigen variable number repeat KQ252_03590 PF17243 POTRA domain TamA domain 1 KQ252_03595 PF07690 Major Facilitator Superfamily KQ252_03600 PF03232 Ubiquinone biosynthesis protein COQ7 KQ252_03610 PF00120 Glutamine synthetase, catalytic domain KQ252_03615 PF00486 Transcriptional regulatory protein, C terminal KQ252_03615 PF00072 Response regulator receiver domain KQ252_03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_03620 PF13493 Domain of unknown function (DUF4118) KQ252_03620 PF00512 His Kinase A (phospho-acceptor) domain KQ252_03620 PF02702 Osmosensitive K+ channel His kinase sensor domain KQ252_03625 PF02669 K+-transporting ATPase, c chain KQ252_03635 PF03814 Potassium-transporting ATPase A subunit KQ252_03650 PF03109 ABC1 family KQ252_03655 PF00899 ThiF family KQ252_03660 PF01613 Flavin reductase like domain KQ252_03665 PF00501 AMP-binding enzyme KQ252_03665 PF13193 AMP-binding enzyme C-terminal domain KQ252_03670 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_03670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_03670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_03675 PF00106 short chain dehydrogenase KQ252_03680 PF12833 Helix-turn-helix domain KQ252_03685 PF17827 PrmC N-terminal domain KQ252_03685 PF13847 Methyltransferase domain KQ252_03690 PF03462 PCRF domain KQ252_03690 PF00472 RF-1 domain KQ252_03700 PF03466 LysR substrate binding domain KQ252_03700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_03715 PF00296 Luciferase-like monooxygenase KQ252_03725 PF13994 PgaD-like protein KQ252_03735 PF14883 Hypothetical glycosyl hydrolase family 13 KQ252_03735 PF01522 Polysaccharide deacetylase KQ252_03745 PF03618 Kinase/pyrophosphorylase KQ252_03750 PF00391 PEP-utilising enzyme, mobile domain KQ252_03750 PF02896 PEP-utilising enzyme, TIM barrel domain KQ252_03750 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KQ252_03760 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KQ252_03760 PF06481 COX Aromatic Rich Motif KQ252_03765 PF00115 Cytochrome C and Quinol oxidase polypeptide I KQ252_03770 PF00510 Cytochrome c oxidase subunit III KQ252_03775 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KQ252_03780 PF01040 UbiA prenyltransferase family KQ252_03785 PF01250 Ribosomal protein S6 KQ252_03790 PF01084 Ribosomal protein S18 KQ252_03795 PF03948 Ribosomal protein L9, C-terminal domain KQ252_03795 PF01281 Ribosomal protein L9, N-terminal domain KQ252_03800 PF00772 DnaB-like helicase N terminal domain KQ252_03800 PF03796 DnaB-like helicase C terminal domain KQ252_03805 PF01168 Alanine racemase, N-terminal domain KQ252_03805 PF00842 Alanine racemase, C-terminal domain KQ252_03815 PF08379 Bacterial transglutaminase-like N-terminal region KQ252_03815 PF01841 Transglutaminase-like superfamily KQ252_03825 PF14403 Circularly permuted ATP-grasp type 2 KQ252_03835 PF01134 Glucose inhibited division protein A KQ252_03835 PF13932 GidA associated domain KQ252_03855 PF02954 Bacterial regulatory protein, Fis family KQ252_03860 PF01808 AICARFT/IMPCHase bienzyme KQ252_03860 PF02142 MGS-like domain KQ252_03865 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KQ252_03865 PF02843 Phosphoribosylglycinamide synthetase, C domain KQ252_03865 PF02844 Phosphoribosylglycinamide synthetase, N domain KQ252_03870 PF03180 NLPA lipoprotein KQ252_03875 PF00005 ABC transporter KQ252_03875 PF09383 NIL domain KQ252_03880 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_03885 PF00753 Metallo-beta-lactamase superfamily KQ252_03885 PF16123 Hydroxyacylglutathione hydrolase C-terminus KQ252_03895 PF00375 Sodium:dicarboxylate symporter family KQ252_03915 PF07995 Glucose / Sorbosone dehydrogenase KQ252_03920 PF00892 EamA-like transporter family KQ252_03925 PF01177 Asp/Glu/Hydantoin racemase KQ252_03930 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_03930 PF00085 Thioredoxin KQ252_03945 PF02470 MlaD protein KQ252_03950 PF04403 Paraquat-inducible protein A KQ252_03975 PF08946 Osmosensory transporter coiled coil KQ252_03975 PF00083 Sugar (and other) transporter KQ252_04020 PF07729 FCD domain KQ252_04020 PF00392 Bacterial regulatory proteins, gntR family KQ252_04030 PF03616 Sodium/glutamate symporter KQ252_04035 PF00561 alpha/beta hydrolase fold KQ252_04050 PF13737 Transposase DDE domain KQ252_04065 PF04076 Bacterial OB fold (BOF) protein KQ252_04095 PF00324 Amino acid permease KQ252_04100 PF00171 Aldehyde dehydrogenase family KQ252_04105 PF00202 Aminotransferase class-III KQ252_04110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_04110 PF03466 LysR substrate binding domain KQ252_04135 PF13018 Extended Signal Peptide of Type V secretion system KQ252_04135 PF13332 Hemagglutinin repeat KQ252_04135 PF05860 haemagglutination activity domain KQ252_04135 PF04829 Pre-toxin domain with VENN motif KQ252_04140 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KQ252_04140 PF17287 POTRA domain KQ252_04140 PF08479 POTRA domain, ShlB-type KQ252_04165 PF00069 Protein kinase domain KQ252_04185 PF00814 Glycoprotease family KQ252_04190 PF01165 Ribosomal protein S21 KQ252_04195 PF09424 Yqey-like protein KQ252_04200 PF01435 Peptidase family M48 KQ252_04205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ252_04205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ252_04220 PF00156 Phosphoribosyl transferase domain KQ252_04225 PF02674 Colicin V production protein KQ252_04230 PF01180 Dihydroorotate dehydrogenase KQ252_04250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KQ252_04250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KQ252_04255 PF00881 Nitroreductase family KQ252_04265 PF00270 DEAD/DEAH box helicase KQ252_04265 PF00271 Helicase conserved C-terminal domain KQ252_04270 PF00313 'Cold-shock' DNA-binding domain KQ252_04280 PF04542 Sigma-70 region 2 KQ252_04280 PF04545 Sigma-70, region 4 KQ252_04280 PF00140 Sigma-70 factor, region 1.2 KQ252_04285 PF04241 Protein of unknown function (DUF423) KQ252_04295 PF05690 Thiazole biosynthesis protein ThiG KQ252_04305 PF03883 Peroxide stress protein YaaA KQ252_04315 PF00753 Metallo-beta-lactamase superfamily KQ252_04320 PF07687 Peptidase dimerisation domain KQ252_04320 PF01546 Peptidase family M20/M25/M40 KQ252_04330 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KQ252_04335 PF01817 Chorismate mutase type II KQ252_04335 PF00800 Prephenate dehydratase KQ252_04335 PF01842 ACT domain KQ252_04345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_04345 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_04345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_04350 PF00375 Sodium:dicarboxylate symporter family KQ252_04355 PF02885 Glycosyl transferase family, helical bundle domain KQ252_04355 PF00591 Glycosyl transferase family, a/b domain KQ252_04360 PF07023 Protein of unknown function (DUF1315) KQ252_04365 PF01513 ATP-NAD kinase KQ252_04370 PF00905 Penicillin binding protein transpeptidase domain KQ252_04370 PF14814 Bifunctional transglycosylase second domain KQ252_04370 PF00912 Transglycosylase KQ252_04380 PF00293 NUDIX domain KQ252_04390 PF08521 Two-component sensor kinase N-terminal KQ252_04390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_04390 PF00512 His Kinase A (phospho-acceptor) domain KQ252_04395 PF00072 Response regulator receiver domain KQ252_04395 PF00486 Transcriptional regulatory protein, C terminal KQ252_04405 PF00437 Type II/IV secretion system protein KQ252_04405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KQ252_04415 PF01980 tRNA-methyltransferase O KQ252_04415 PF18389 TrmO C-terminal domain KQ252_04420 PF00970 Oxidoreductase FAD-binding domain KQ252_04420 PF00175 Oxidoreductase NAD-binding domain KQ252_04425 PF02567 Phenazine biosynthesis-like protein KQ252_04430 PF00155 Aminotransferase class I and II KQ252_04430 PF00392 Bacterial regulatory proteins, gntR family KQ252_04435 PF01136 Peptidase family U32 KQ252_04435 PF16325 Peptidase family U32 C-terminal domain KQ252_04440 PF00037 4Fe-4S binding domain KQ252_04445 PF00893 Small Multidrug Resistance protein KQ252_04450 PF00005 ABC transporter KQ252_04455 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_04460 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_04465 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ252_04470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_04470 PF03466 LysR substrate binding domain KQ252_04475 PF13533 Biotin-lipoyl like KQ252_04480 PF00873 AcrB/AcrD/AcrF family KQ252_04485 PF02321 Outer membrane efflux protein KQ252_04490 PF00464 Serine hydroxymethyltransferase KQ252_04520 PF00005 ABC transporter KQ252_04525 PF01061 ABC-2 type transporter KQ252_04530 PF14489 QueF-like protein KQ252_04530 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KQ252_04540 PF01098 Cell cycle protein KQ252_04545 PF13406 Transglycosylase SLT domain KQ252_04550 PF03330 Lytic transglycolase KQ252_04550 PF05036 Sporulation related domain KQ252_04570 PF12833 Helix-turn-helix domain KQ252_04580 PF00889 Elongation factor TS KQ252_04585 PF00318 Ribosomal protein S2 KQ252_04590 PF00557 Metallopeptidase family M24 KQ252_04600 PF07690 Major Facilitator Superfamily KQ252_04610 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_04610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ252_04615 PF04055 Radical SAM superfamily KQ252_04620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_04620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_04620 PF09317 Domain of unknown function (DUF1974) KQ252_04635 PF05221 S-adenosyl-L-homocysteine hydrolase KQ252_04635 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KQ252_04640 PF02219 Methylenetetrahydrofolate reductase KQ252_04645 PF04452 RNA methyltransferase KQ252_04650 PF03707 Bacterial signalling protein N terminal repeat KQ252_04650 PF00563 EAL domain KQ252_04650 PF00990 Diguanylate cyclase, GGDEF domain KQ252_04655 PF01515 Phosphate acetyl/butaryl transferase KQ252_04655 PF03949 Malic enzyme, NAD binding domain KQ252_04655 PF00390 Malic enzyme, N-terminal domain KQ252_04660 PF12627 Probable RNA and SrmB- binding site of polymerase A KQ252_04660 PF01743 Poly A polymerase head domain KQ252_04665 PF13180 PDZ domain KQ252_04670 PF01784 NIF3 (NGG1p interacting factor 3) KQ252_04675 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KQ252_04675 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KQ252_04710 PF01040 UbiA prenyltransferase family KQ252_04715 PF04345 Chorismate lyase KQ252_04720 PF00120 Glutamine synthetase, catalytic domain KQ252_04720 PF03951 Glutamine synthetase, beta-Grasp domain KQ252_04725 PF00854 POT family KQ252_04735 PF13356 Arm DNA-binding domain KQ252_04735 PF00589 Phage integrase family KQ252_04740 PF00717 Peptidase S24-like KQ252_04745 PF13438 Domain of unknown function (DUF4113) KQ252_04745 PF00817 impB/mucB/samB family KQ252_04745 PF11799 impB/mucB/samB family C-terminal domain KQ252_04855 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) KQ252_04875 PF06381 Protein of unknown function (DUF1073) KQ252_04965 PF00145 C-5 cytosine-specific DNA methylase KQ252_04970 PF00772 DnaB-like helicase N terminal domain KQ252_04970 PF03796 DnaB-like helicase C terminal domain KQ252_05070 PF00117 Glutamine amidotransferase class-I KQ252_05075 PF01433 Peptidase family M1 domain KQ252_05075 PF11838 ERAP1-like C-terminal domain KQ252_05080 PF07715 TonB-dependent Receptor Plug Domain KQ252_05080 PF00593 TonB dependent receptor KQ252_05085 PF02885 Glycosyl transferase family, helical bundle domain KQ252_05085 PF00591 Glycosyl transferase family, a/b domain KQ252_05090 PF00218 Indole-3-glycerol phosphate synthase KQ252_05105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KQ252_05105 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KQ252_05110 PF01799 [2Fe-2S] binding domain KQ252_05110 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_05115 PF01227 GTP cyclohydrolase I KQ252_05125 PF00144 Beta-lactamase KQ252_05140 PF05675 Protein of unknown function (DUF817) KQ252_05145 PF01208 Uroporphyrinogen decarboxylase (URO-D) KQ252_05155 PF00425 chorismate binding enzyme KQ252_05165 PF00975 Thioesterase domain KQ252_05170 PF00005 ABC transporter KQ252_05175 PF00664 ABC transporter transmembrane region KQ252_05175 PF00005 ABC transporter KQ252_05180 PF00282 Pyridoxal-dependent decarboxylase conserved domain KQ252_05185 PF00550 Phosphopantetheine attachment site KQ252_05185 PF00857 Isochorismatase family KQ252_05190 PF13193 AMP-binding enzyme C-terminal domain KQ252_05190 PF00501 AMP-binding enzyme KQ252_05195 PF00550 Phosphopantetheine attachment site KQ252_05195 PF00668 Condensation domain KQ252_05195 PF00501 AMP-binding enzyme KQ252_05200 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KQ252_05205 PF07715 TonB-dependent Receptor Plug Domain KQ252_05205 PF00593 TonB dependent receptor KQ252_05210 PF01497 Periplasmic binding protein KQ252_05215 PF00005 ABC transporter KQ252_05220 PF01032 FecCD transport family KQ252_05225 PF01032 FecCD transport family KQ252_05230 PF00975 Thioesterase domain KQ252_05230 PF00550 Phosphopantetheine attachment site KQ252_05230 PF00668 Condensation domain KQ252_05230 PF13193 AMP-binding enzyme C-terminal domain KQ252_05230 PF00501 AMP-binding enzyme KQ252_05235 PF00668 Condensation domain KQ252_05235 PF00501 AMP-binding enzyme KQ252_05235 PF13193 AMP-binding enzyme C-terminal domain KQ252_05235 PF00550 Phosphopantetheine attachment site KQ252_05245 PF13309 HTH domain KQ252_05245 PF08348 YheO-like PAS domain KQ252_05250 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_05255 PF13737 Transposase DDE domain KQ252_05265 PF13356 Arm DNA-binding domain KQ252_05265 PF00589 Phage integrase family KQ252_05275 PF04328 Selenoprotein, putative KQ252_05280 PF02554 Carbon starvation protein CstA KQ252_05280 PF13722 5TM C-terminal transporter carbon starvation CstA KQ252_05285 PF08207 Elongation factor P (EF-P) KOW-like domain KQ252_05285 PF09285 Elongation factor P, C-terminal KQ252_05285 PF01132 Elongation factor P (EF-P) OB domain KQ252_05290 PF04055 Radical SAM superfamily KQ252_05300 PF12792 CSS motif domain associated with EAL KQ252_05300 PF00563 EAL domain KQ252_05305 PF01197 Ribosomal protein L31 KQ252_05310 PF13593 SBF-like CPA transporter family (DUF4137) KQ252_05315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ252_05320 PF07690 Major Facilitator Superfamily KQ252_05325 PF05362 Lon protease (S16) C-terminal proteolytic domain KQ252_05325 PF13654 AAA domain KQ252_05330 PF03466 LysR substrate binding domain KQ252_05330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_05335 PF01476 LysM domain KQ252_05335 PF01551 Peptidase family M23 KQ252_05340 PF01975 Survival protein SurE KQ252_05355 PF07943 Penicillin-binding protein 5, C-terminal domain KQ252_05355 PF00768 D-alanyl-D-alanine carboxypeptidase KQ252_05360 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_05365 PF13344 Haloacid dehalogenase-like hydrolase KQ252_05365 PF00293 NUDIX domain KQ252_05375 PF04356 Protein of unknown function (DUF489) KQ252_05380 PF08328 Adenylosuccinate lyase C-terminal KQ252_05380 PF00206 Lyase KQ252_05395 PF08496 Peptidase family S49 N-terminal KQ252_05395 PF01343 Peptidase family S49 KQ252_05400 PF00005 ABC transporter KQ252_05405 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_05410 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_05415 PF12849 PBP superfamily domain KQ252_05420 PF00324 Amino acid permease KQ252_05425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ252_05425 PF00205 Thiamine pyrophosphate enzyme, central domain KQ252_05425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ252_05430 PF01037 Lrp/AsnC ligand binding domain KQ252_05435 PF00171 Aldehyde dehydrogenase family KQ252_05440 PF00282 Pyridoxal-dependent decarboxylase conserved domain KQ252_05445 PF00202 Aminotransferase class-III KQ252_05455 PF00440 Bacterial regulatory proteins, tetR family KQ252_05455 PF17754 MftR C-terminal domain KQ252_05465 PF00487 Fatty acid desaturase KQ252_05470 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_05470 PF00970 Oxidoreductase FAD-binding domain KQ252_05470 PF00175 Oxidoreductase NAD-binding domain KQ252_05475 PF00440 Bacterial regulatory proteins, tetR family KQ252_05485 PF12137 RNA polymerase recycling family C-terminal KQ252_05485 PF00176 SNF2 family N-terminal domain KQ252_05485 PF18339 RapA N-terminal Tudor like domain 1 KQ252_05485 PF18337 RapA N-terminal Tudor like domain KQ252_05485 PF00271 Helicase conserved C-terminal domain KQ252_05490 PF00849 RNA pseudouridylate synthase KQ252_05500 PF00202 Aminotransferase class-III KQ252_05505 PF02581 Thiamine monophosphate synthase KQ252_05530 PF00675 Insulinase (Peptidase family M16) KQ252_05530 PF05193 Peptidase M16 inactive domain KQ252_05535 PF02567 Phenazine biosynthesis-like protein KQ252_05540 PF00375 Sodium:dicarboxylate symporter family KQ252_05545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_05545 PF03466 LysR substrate binding domain KQ252_05550 PF06779 Uncharacterised MFS-type transporter YbfB KQ252_05570 PF13737 Transposase DDE domain KQ252_05580 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ252_05585 PF00849 RNA pseudouridylate synthase KQ252_05590 PF03971 Monomeric isocitrate dehydrogenase KQ252_05600 PF07943 Penicillin-binding protein 5, C-terminal domain KQ252_05600 PF00768 D-alanyl-D-alanine carboxypeptidase KQ252_05605 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_05610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ252_05615 PF00875 DNA photolyase KQ252_05615 PF03441 FAD binding domain of DNA photolyase KQ252_05645 PF02350 UDP-N-acetylglucosamine 2-epimerase KQ252_05660 PF03060 Nitronate monooxygenase KQ252_05665 PF01207 Dihydrouridine synthase (Dus) KQ252_05670 PF07759 Protein of unknown function (DUF1615) KQ252_05680 PF01472 PUA domain KQ252_05680 PF00696 Amino acid kinase family KQ252_05685 PF01018 GTP1/OBG KQ252_05685 PF01926 50S ribosome-binding GTPase KQ252_05700 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KQ252_05700 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KQ252_05705 PF00892 EamA-like transporter family KQ252_05715 PF00271 Helicase conserved C-terminal domain KQ252_05715 PF02151 UvrB/uvrC motif KQ252_05715 PF12344 Ultra-violet resistance protein B KQ252_05715 PF17757 UvrB interaction domain KQ252_05715 PF04851 Type III restriction enzyme, res subunit KQ252_05725 PF17151 Periplasmic sensor domain KQ252_05725 PF00990 Diguanylate cyclase, GGDEF domain KQ252_05735 PF00155 Aminotransferase class I and II KQ252_05765 PF00106 short chain dehydrogenase KQ252_05770 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KQ252_05775 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KQ252_05780 PF02565 Recombination protein O C terminal KQ252_05780 PF11967 Recombination protein O N terminal KQ252_05790 PF07650 KH domain KQ252_05790 PF01926 50S ribosome-binding GTPase KQ252_05795 PF00035 Double-stranded RNA binding motif KQ252_05795 PF14622 Ribonuclease-III-like KQ252_05805 PF10502 Signal peptidase, peptidase S26 KQ252_05810 PF00009 Elongation factor Tu GTP binding domain KQ252_05810 PF03144 Elongation factor Tu domain 2 KQ252_05810 PF06421 GTP-binding protein LepA C-terminus KQ252_05810 PF00679 Elongation factor G C-terminus KQ252_05815 PF13302 Acetyltransferase (GNAT) domain KQ252_05825 PF13180 PDZ domain KQ252_05830 PF00890 FAD binding domain KQ252_05830 PF02910 Fumarate reductase flavoprotein C-term KQ252_05840 PF02223 Thymidylate kinase KQ252_05845 PF02618 YceG-like family KQ252_05850 PF01063 Amino-transferase class IV KQ252_05865 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_05870 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_05875 PF12857 TOBE-like domain KQ252_05875 PF00005 ABC transporter KQ252_05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_05880 PF03466 LysR substrate binding domain KQ252_05890 PF14602 Hexapeptide repeat of succinyl-transferase KQ252_05890 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KQ252_05890 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_05900 PF06508 Queuosine biosynthesis protein QueC KQ252_05915 PF00578 AhpC/TSA family KQ252_05925 PF01467 Cytidylyltransferase-like KQ252_05925 PF00293 NUDIX domain KQ252_05930 PF00378 Enoyl-CoA hydratase/isomerase KQ252_05935 PF01784 NIF3 (NGG1p interacting factor 3) KQ252_05940 PF07690 Major Facilitator Superfamily KQ252_05945 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KQ252_05945 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KQ252_05945 PF02769 AIR synthase related protein, C-terminal domain KQ252_05950 PF01966 HD domain KQ252_05955 PF07499 RuvA, C-terminal domain KQ252_05955 PF01330 RuvA N terminal domain KQ252_05960 PF05496 Holliday junction DNA helicase RuvB P-loop domain KQ252_05960 PF17864 RuvB AAA lid domain KQ252_05960 PF05491 RuvB C-terminal winged helix domain KQ252_05965 PF07687 Peptidase dimerisation domain KQ252_05965 PF01546 Peptidase family M20/M25/M40 KQ252_05970 PF03061 Thioesterase superfamily KQ252_05975 PF01618 MotA/TolQ/ExbB proton channel family KQ252_05980 PF02472 Biopolymer transport protein ExbD/TolR KQ252_05990 PF07676 WD40-like Beta Propeller Repeat KQ252_05990 PF04052 TolB amino-terminal domain KQ252_05995 PF00691 OmpA family KQ252_06005 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KQ252_06010 PF00588 SpoU rRNA Methylase family KQ252_06010 PF08032 RNA 2'-O ribose methyltransferase substrate binding KQ252_06040 PF11638 DnaA N-terminal domain KQ252_06040 PF00308 Bacterial dnaA protein KQ252_06040 PF08299 Bacterial dnaA protein helix-turn-helix KQ252_06045 PF01594 AI-2E family transporter KQ252_06050 PF00586 AIR synthase related protein, N-terminal domain KQ252_06050 PF02769 AIR synthase related protein, C-terminal domain KQ252_06055 PF00551 Formyl transferase KQ252_06060 PF12697 Alpha/beta hydrolase family KQ252_06065 PF06965 Na+/H+ antiporter 1 KQ252_06065 PF01343 Peptidase family S49 KQ252_06080 PF00005 ABC transporter KQ252_06085 PF02687 FtsX-like permease family KQ252_06085 PF12704 MacB-like periplasmic core domain KQ252_06095 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KQ252_06110 PF00266 Aminotransferase class-V KQ252_06120 PF13533 Biotin-lipoyl like KQ252_06140 PF00535 Glycosyl transferase family 2 KQ252_06155 PF03989 DNA gyrase C-terminal domain, beta-propeller KQ252_06155 PF00521 DNA gyrase/topoisomerase IV, subunit A KQ252_06160 PF01012 Electron transfer flavoprotein domain KQ252_06160 PF00766 Electron transfer flavoprotein FAD-binding domain KQ252_06165 PF01012 Electron transfer flavoprotein domain KQ252_06170 PF02899 Phage integrase, N-terminal SAM-like domain KQ252_06170 PF00589 Phage integrase family KQ252_06175 PF01810 LysE type translocator KQ252_06180 PF01678 Diaminopimelate epimerase KQ252_06185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KQ252_06185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KQ252_06195 PF00324 Amino acid permease KQ252_06200 PF18073 Rubredoxin metal binding domain KQ252_06210 PF00152 tRNA synthetases class II (D, K and N) KQ252_06215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ252_06215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ252_06215 PF11890 Domain of unknown function (DUF3410) KQ252_06220 PF06803 Protein of unknown function (DUF1232) KQ252_06225 PF02634 FdhD/NarQ family KQ252_06230 PF00384 Molybdopterin oxidoreductase KQ252_06235 PF02595 Glycerate kinase family KQ252_06250 PF00881 Nitroreductase family KQ252_06270 PF09857 Putative toxin of bacterial toxin-antitoxin pair KQ252_06280 PF13193 AMP-binding enzyme C-terminal domain KQ252_06280 PF00668 Condensation domain KQ252_06280 PF00501 AMP-binding enzyme KQ252_06280 PF00550 Phosphopantetheine attachment site KQ252_06280 PF00975 Thioesterase domain KQ252_06295 PF01272 Transcription elongation factor, GreA/GreB, C-term KQ252_06295 PF03449 Transcription elongation factor, N-terminal KQ252_06300 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ252_06300 PF01464 Transglycosylase SLT domain KQ252_06310 PF01171 PP-loop family KQ252_06315 PF01464 Transglycosylase SLT domain KQ252_06320 PF01435 Peptidase family M48 KQ252_06330 PF00873 AcrB/AcrD/AcrF family KQ252_06335 PF03009 Glycerophosphoryl diester phosphodiesterase family KQ252_06340 PF00753 Metallo-beta-lactamase superfamily KQ252_06345 PF01219 Prokaryotic diacylglycerol kinase KQ252_06365 PF01757 Acyltransferase family KQ252_06365 PF00842 Alanine racemase, C-terminal domain KQ252_06365 PF01168 Alanine racemase, N-terminal domain KQ252_06380 PF00118 TCP-1/cpn60 chaperonin family KQ252_06385 PF00166 Chaperonin 10 Kd subunit KQ252_06395 PF00149 Calcineurin-like phosphoesterase KQ252_06400 PF00781 Diacylglycerol kinase catalytic domain KQ252_06405 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KQ252_06405 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KQ252_06410 PF01266 FAD dependent oxidoreductase KQ252_06410 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KQ252_06415 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KQ252_06415 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KQ252_06420 PF00083 Sugar (and other) transporter KQ252_06435 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KQ252_06435 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KQ252_06450 PF09423 PhoD-like phosphatase KQ252_06450 PF16655 PhoD-like phosphatase, N-terminal domain KQ252_06470 PF00809 Pterin binding enzyme KQ252_06475 PF06480 FtsH Extracellular KQ252_06475 PF01434 Peptidase family M41 KQ252_06475 PF00004 ATPase family associated with various cellular activities (AAA) KQ252_06475 PF17862 AAA+ lid domain KQ252_06480 PF01728 FtsJ-like methyltransferase KQ252_06485 PF01985 CRS1 / YhbY (CRM) domain KQ252_06500 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KQ252_06500 PF00117 Glutamine amidotransferase class-I KQ252_06505 PF02142 MGS-like domain KQ252_06505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ252_06505 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KQ252_06510 PF03449 Transcription elongation factor, N-terminal KQ252_06510 PF01272 Transcription elongation factor, GreA/GreB, C-term KQ252_06515 PF00440 Bacterial regulatory proteins, tetR family KQ252_06520 PF01042 Endoribonuclease L-PSP KQ252_06525 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_06530 PF00582 Universal stress protein family KQ252_06535 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ252_06545 PF09587 Bacterial capsule synthesis protein PGA_cap KQ252_06575 PF00999 Sodium/hydrogen exchanger family KQ252_06580 PF04228 Putative neutral zinc metallopeptidase KQ252_06585 PF05661 Protein of unknown function (DUF808) KQ252_06590 PF00579 tRNA synthetases class I (W and Y) KQ252_06595 PF02629 CoA binding domain KQ252_06595 PF00549 CoA-ligase KQ252_06600 PF00549 CoA-ligase KQ252_06600 PF08442 ATP-grasp domain KQ252_06605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ252_06605 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_06610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ252_06610 PF00364 Biotin-requiring enzyme KQ252_06610 PF02817 e3 binding domain KQ252_06615 PF16078 2-oxoglutarate dehydrogenase N-terminus KQ252_06615 PF00676 Dehydrogenase E1 component KQ252_06615 PF02779 Transketolase, pyrimidine binding domain KQ252_06615 PF16870 2-oxoglutarate dehydrogenase C-terminal KQ252_06630 PF13085 2Fe-2S iron-sulfur cluster binding domain KQ252_06635 PF00890 FAD binding domain KQ252_06635 PF02910 Fumarate reductase flavoprotein C-term KQ252_06640 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KQ252_06645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KQ252_06650 PF00285 Citrate synthase, C-terminal domain KQ252_06660 PF17773 UPF0176 acylphosphatase like domain KQ252_06660 PF00581 Rhodanese-like domain KQ252_06675 PF04546 Sigma-70, non-essential region KQ252_06675 PF03979 Sigma-70 factor, region 1.1 KQ252_06675 PF00140 Sigma-70 factor, region 1.2 KQ252_06675 PF04542 Sigma-70 region 2 KQ252_06675 PF04539 Sigma-70 region 3 KQ252_06675 PF04545 Sigma-70, region 4 KQ252_06680 PF04359 Protein of unknown function (DUF493) KQ252_06685 PF03099 Biotin/lipoate A/B protein ligase family KQ252_06695 PF00465 Iron-containing alcohol dehydrogenase KQ252_06700 PF13520 Amino acid permease KQ252_06705 PF03358 NADPH-dependent FMN reductase KQ252_06710 PF01638 HxlR-like helix-turn-helix KQ252_06715 PF00588 SpoU rRNA Methylase family KQ252_06720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KQ252_06720 PF14824 Sirohaem biosynthesis protein central KQ252_06720 PF10414 Sirohaem synthase dimerisation region KQ252_06725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ252_06725 PF02403 Seryl-tRNA synthetase N-terminal domain KQ252_06735 PF03548 Outer membrane lipoprotein carrier protein LolA KQ252_06740 PF01016 Ribosomal L27 protein KQ252_06745 PF00829 Ribosomal prokaryotic L21 protein KQ252_06755 PF00348 Polyprenyl synthetase KQ252_06765 PF01569 PAP2 superfamily KQ252_06770 PF00529 HlyD membrane-fusion protein of T1SS KQ252_06770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ252_06775 PF00873 AcrB/AcrD/AcrF family KQ252_06780 PF02321 Outer membrane efflux protein KQ252_06785 PF01906 Putative heavy-metal-binding KQ252_06790 PF01906 Putative heavy-metal-binding KQ252_06810 PF08264 Anticodon-binding domain of tRNA KQ252_06810 PF00133 tRNA synthetases class I (I, L, M and V) KQ252_06810 PF10458 Valyl tRNA synthetase tRNA binding arm KQ252_06830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_06830 PF03466 LysR substrate binding domain KQ252_06835 PF00909 Ammonium Transporter Family KQ252_06845 PF08521 Two-component sensor kinase N-terminal KQ252_06845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_06845 PF00512 His Kinase A (phospho-acceptor) domain KQ252_06850 PF00486 Transcriptional regulatory protein, C terminal KQ252_06850 PF00072 Response regulator receiver domain KQ252_06855 PF08019 Phosphoethanolamine transferase EptA/EptB KQ252_06855 PF00884 Sulfatase KQ252_06875 PF01734 Patatin-like phospholipase KQ252_06885 PF01145 SPFH domain / Band 7 family KQ252_06890 PF04237 YjbR KQ252_06895 PF00348 Polyprenyl synthetase KQ252_06900 PF04303 PrpF protein KQ252_06905 PF00324 Amino acid permease KQ252_06915 PF01965 DJ-1/PfpI family KQ252_06920 PF16197 Ketoacyl-synthetase C-terminal extension KQ252_06920 PF09277 Erythronolide synthase, docking KQ252_06920 PF00698 Acyl transferase domain KQ252_06920 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ252_06920 PF08240 Alcohol dehydrogenase GroES-like domain KQ252_06920 PF14765 Polyketide synthase dehydratase KQ252_06920 PF00550 Phosphopantetheine attachment site KQ252_06920 PF08659 KR domain KQ252_06920 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ252_06920 PF08990 Erythronolide synthase docking KQ252_06925 PF06719 AraC-type transcriptional regulator N-terminus KQ252_06925 PF12833 Helix-turn-helix domain KQ252_06930 PF02673 Bacitracin resistance protein BacA KQ252_06950 PF02525 Flavodoxin-like fold KQ252_06965 PF01507 Phosphoadenosine phosphosulfate reductase family KQ252_06970 PF06974 Protein of unknown function (DUF1298) KQ252_06970 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KQ252_06980 PF10150 Ribonuclease E/G family KQ252_06980 PF00575 S1 RNA binding domain KQ252_06985 PF02545 Maf-like protein KQ252_06990 PF04093 rod shape-determining protein MreD KQ252_06995 PF04085 rod shape-determining protein MreC KQ252_07005 PF02686 Glu-tRNAGln amidotransferase C subunit KQ252_07010 PF01425 Amidase KQ252_07015 PF02637 GatB domain KQ252_07015 PF02934 GatB/GatE catalytic domain KQ252_07040 PF05992 SbmA/BacA-like family KQ252_07045 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_07045 PF13291 ACT domain KQ252_07050 PF01734 Patatin-like phospholipase KQ252_07055 PF01235 Sodium:alanine symporter family KQ252_07070 PF00881 Nitroreductase family KQ252_07075 PF07690 Major Facilitator Superfamily KQ252_07080 PF12805 FUSC-like inner membrane protein yccS KQ252_07090 PF00175 Oxidoreductase NAD-binding domain KQ252_07090 PF00667 FAD binding domain KQ252_07090 PF00258 Flavodoxin KQ252_07130 PF17969 L,D-transpeptidase C-terminal domain KQ252_07130 PF03734 L,D-transpeptidase catalytic domain KQ252_07135 PF04304 Protein of unknown function (DUF454) KQ252_07145 PF08085 Entericidin EcnA/B family KQ252_07150 PF01546 Peptidase family M20/M25/M40 KQ252_07150 PF07687 Peptidase dimerisation domain KQ252_07160 PF01584 CheW-like domain KQ252_07160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_07160 PF01627 Hpt domain KQ252_07160 PF00072 Response regulator receiver domain KQ252_07165 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KQ252_07165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KQ252_07170 PF01584 CheW-like domain KQ252_07175 PF00072 Response regulator receiver domain KQ252_07180 PF00072 Response regulator receiver domain KQ252_07195 PF00873 AcrB/AcrD/AcrF family KQ252_07200 PF03129 Anticodon binding domain KQ252_07200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ252_07200 PF04073 Aminoacyl-tRNA editing domain KQ252_07205 PF07411 Domain of unknown function (DUF1508) KQ252_07210 PF03831 PhnA domain KQ252_07210 PF08274 PhnA Zinc-Ribbon KQ252_07215 PF04343 Protein of unknown function, DUF488 KQ252_07225 PF01571 Aminomethyltransferase folate-binding domain KQ252_07230 PF10411 Disulfide bond isomerase protein N-terminus KQ252_07230 PF13098 Thioredoxin-like domain KQ252_07240 PF03547 Membrane transport protein KQ252_07245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ252_07250 PF07715 TonB-dependent Receptor Plug Domain KQ252_07250 PF00593 TonB dependent receptor KQ252_07255 PF02245 Methylpurine-DNA glycosylase (MPG) KQ252_07260 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KQ252_07260 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KQ252_07260 PF06827 Zinc finger found in FPG and IleRS KQ252_07275 PF01741 Large-conductance mechanosensitive channel, MscL KQ252_07280 PF03144 Elongation factor Tu domain 2 KQ252_07280 PF00009 Elongation factor Tu GTP binding domain KQ252_07280 PF00679 Elongation factor G C-terminus KQ252_07285 PF00860 Permease family KQ252_07290 PF08468 Methyltransferase small domain N-terminal KQ252_07290 PF05175 Methyltransferase small domain KQ252_07295 PF00324 Amino acid permease KQ252_07300 PF01139 tRNA-splicing ligase RtcB KQ252_07310 PF13505 Outer membrane protein beta-barrel domain KQ252_07310 PF00691 OmpA family KQ252_07320 PF00108 Thiolase, N-terminal domain KQ252_07320 PF02803 Thiolase, C-terminal domain KQ252_07330 PF00893 Small Multidrug Resistance protein KQ252_07340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KQ252_07340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KQ252_07345 PF01011 PQQ enzyme repeat KQ252_07350 PF04966 Carbohydrate-selective porin, OprB family KQ252_07355 PF02515 CoA-transferase family III KQ252_07360 PF02311 AraC-like ligand binding domain KQ252_07360 PF12833 Helix-turn-helix domain KQ252_07365 PF00108 Thiolase, N-terminal domain KQ252_07365 PF02803 Thiolase, C-terminal domain KQ252_07370 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ252_07370 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ252_07370 PF00378 Enoyl-CoA hydratase/isomerase KQ252_07395 PF03006 Haemolysin-III related KQ252_07400 PF00083 Sugar (and other) transporter KQ252_07400 PF07690 Major Facilitator Superfamily KQ252_07410 PF07517 SecA DEAD-like domain KQ252_07410 PF02810 SEC-C motif KQ252_07410 PF07516 SecA Wing and Scaffold domain KQ252_07410 PF01043 SecA preprotein cross-linking domain KQ252_07415 PF10417 C-terminal domain of 1-Cys peroxiredoxin KQ252_07415 PF00578 AhpC/TSA family KQ252_07420 PF00753 Metallo-beta-lactamase superfamily KQ252_07435 PF08245 Mur ligase middle domain KQ252_07435 PF02875 Mur ligase family, glutamate ligase domain KQ252_07440 PF01039 Carboxyl transferase domain KQ252_07445 PF00290 Tryptophan synthase alpha chain KQ252_07470 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_07475 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KQ252_07480 PF07715 TonB-dependent Receptor Plug Domain KQ252_07480 PF00593 TonB dependent receptor KQ252_07485 PF01923 Cobalamin adenosyltransferase KQ252_07490 PF03009 Glycerophosphoryl diester phosphodiesterase family KQ252_07505 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KQ252_07510 PF00072 Response regulator receiver domain KQ252_07510 PF00486 Transcriptional regulatory protein, C terminal KQ252_07515 PF00512 His Kinase A (phospho-acceptor) domain KQ252_07515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_07515 PF00672 HAMP domain KQ252_07525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_07525 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_07525 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ252_07525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_07530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_07530 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_07530 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ252_07530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_07535 PF06146 Phosphate-starvation-inducible E KQ252_07555 PF07715 TonB-dependent Receptor Plug Domain KQ252_07555 PF00593 TonB dependent receptor KQ252_07565 PF02938 GAD domain KQ252_07565 PF00152 tRNA synthetases class II (D, K and N) KQ252_07565 PF01336 OB-fold nucleic acid binding domain KQ252_07570 PF17102 Stealth protein CR3, conserved region 3 KQ252_07570 PF17101 Stealth protein CR1, conserved region 1 KQ252_07570 PF11380 Stealth protein CR2, conserved region 2 KQ252_07595 PF00534 Glycosyl transferases group 1 KQ252_07595 PF13439 Glycosyltransferase Family 4 KQ252_07600 PF00535 Glycosyl transferase family 2 KQ252_07605 PF01522 Polysaccharide deacetylase KQ252_07620 PF01063 Amino-transferase class IV KQ252_07625 PF03710 Glutamate-ammonia ligase adenylyltransferase KQ252_07625 PF08335 GlnD PII-uridylyltransferase KQ252_07630 PF07689 KaiB domain KQ252_07630 PF00512 His Kinase A (phospho-acceptor) domain KQ252_07630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_07640 PF02547 Queuosine biosynthesis protein KQ252_07655 PF01702 Queuine tRNA-ribosyltransferase KQ252_07660 PF02699 Preprotein translocase subunit KQ252_07665 PF07549 SecD/SecF GG Motif KQ252_07665 PF13721 SecD export protein N-terminal TM region KQ252_07665 PF02355 Protein export membrane protein KQ252_07670 PF07549 SecD/SecF GG Motif KQ252_07670 PF02355 Protein export membrane protein KQ252_07675 PF04127 DNA / pantothenate metabolism flavoprotein KQ252_07675 PF02441 Flavoprotein KQ252_07680 PF04002 RadC-like JAB domain KQ252_07685 PF01062 Bestrophin, RFP-TM, chloride channel KQ252_07690 PF02811 PHP domain KQ252_07695 PF04279 Intracellular septation protein A KQ252_07700 PF03795 YCII-related domain KQ252_07710 PF01266 FAD dependent oxidoreductase KQ252_07710 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KQ252_07720 PF04461 Protein of unknown function (DUF520) KQ252_07730 PF03061 Thioesterase superfamily KQ252_07735 PF00085 Thioredoxin KQ252_07740 PF00561 alpha/beta hydrolase fold KQ252_07745 PF04273 Putative phosphatase (DUF442) KQ252_07745 PF00753 Metallo-beta-lactamase superfamily KQ252_07755 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_07755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KQ252_07790 PF00990 Diguanylate cyclase, GGDEF domain KQ252_07790 PF17152 Periplasmic sensor domain KQ252_07795 PF01389 OmpA-like transmembrane domain KQ252_07795 PF00691 OmpA family KQ252_07800 PF00149 Calcineurin-like phosphoesterase KQ252_07800 PF10518 TAT (twin-arginine translocation) pathway signal sequence KQ252_07805 PF13091 PLD-like domain KQ252_07815 PF13167 GTP-binding GTPase N-terminal KQ252_07815 PF01926 50S ribosome-binding GTPase KQ252_07815 PF16360 GTP-binding GTPase Middle Region KQ252_07835 PF00149 Calcineurin-like phosphoesterase KQ252_07840 PF00398 Ribosomal RNA adenine dimethylase KQ252_07845 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KQ252_07850 PF00572 Ribosomal protein L13 KQ252_07855 PF00380 Ribosomal protein S9/S16 KQ252_07860 PF13417 Glutathione S-transferase, N-terminal domain KQ252_07860 PF00043 Glutathione S-transferase, C-terminal domain KQ252_07865 PF04386 Stringent starvation protein B KQ252_07875 PF02785 Biotin carboxylase C-terminal domain KQ252_07875 PF00364 Biotin-requiring enzyme KQ252_07875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ252_07875 PF00289 Biotin carboxylase, N-terminal domain KQ252_07885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_07885 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_07885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_07890 PF01039 Carboxyl transferase domain KQ252_07905 PF17932 Tetracyclin repressor-like, C-terminal domain KQ252_07905 PF00440 Bacterial regulatory proteins, tetR family KQ252_07910 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_07910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_07910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_07955 PF01066 CDP-alcohol phosphatidyltransferase KQ252_07960 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KQ252_07980 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KQ252_07980 PF00056 lactate/malate dehydrogenase, NAD binding domain KQ252_07990 PF01551 Peptidase family M23 KQ252_07990 PF01464 Transglycosylase SLT domain KQ252_07990 PF10145 Phage-related minor tail protein KQ252_07995 PF00919 Uncharacterized protein family UPF0004 KQ252_07995 PF04055 Radical SAM superfamily KQ252_07995 PF01938 TRAM domain KQ252_08000 PF02562 PhoH-like protein KQ252_08005 PF02130 Uncharacterized protein family UPF0054 KQ252_08030 PF03358 NADPH-dependent FMN reductase KQ252_08035 PF03631 Virulence factor BrkB KQ252_08040 PF00892 EamA-like transporter family KQ252_08045 PF12833 Helix-turn-helix domain KQ252_08050 PF01557 Fumarylacetoacetate (FAA) hydrolase family KQ252_08095 PF17876 Cold shock domain KQ252_08095 PF08461 Ribonuclease R winged-helix domain KQ252_08095 PF08206 Ribonuclease B OB domain KQ252_08095 PF00773 RNB domain KQ252_08095 PF00575 S1 RNA binding domain KQ252_08100 PF01432 Peptidase family M3 KQ252_08105 PF09526 Probable metal-binding protein (DUF2387) KQ252_08135 PF03937 Flavinator of succinate dehydrogenase KQ252_08140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_08140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_08140 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_08145 PF00743 Flavin-binding monooxygenase-like KQ252_08150 PF01196 Ribosomal protein L17 KQ252_08155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KQ252_08155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KQ252_08155 PF01000 RNA polymerase Rpb3/RpoA insert domain KQ252_08160 PF01479 S4 domain KQ252_08160 PF00163 Ribosomal protein S4/S9 N-terminal domain KQ252_08165 PF00411 Ribosomal protein S11 KQ252_08170 PF00416 Ribosomal protein S13/S18 KQ252_08175 PF00444 Ribosomal protein L36 KQ252_08180 PF00344 SecY translocase KQ252_08185 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KQ252_08190 PF00327 Ribosomal protein L30p/L7e KQ252_08195 PF03719 Ribosomal protein S5, C-terminal domain KQ252_08195 PF00333 Ribosomal protein S5, N-terminal domain KQ252_08200 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KQ252_08205 PF00347 Ribosomal protein L6 KQ252_08210 PF00410 Ribosomal protein S8 KQ252_08215 PF00253 Ribosomal protein S14p/S29e KQ252_08220 PF00673 ribosomal L5P family C-terminus KQ252_08220 PF00281 Ribosomal protein L5 KQ252_08225 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KQ252_08225 PF00467 KOW motif KQ252_08230 PF00238 Ribosomal protein L14p/L23e KQ252_08235 PF00366 Ribosomal protein S17 KQ252_08240 PF00831 Ribosomal L29 protein KQ252_08245 PF00252 Ribosomal protein L16p/L10e KQ252_08250 PF07650 KH domain KQ252_08250 PF00189 Ribosomal protein S3, C-terminal domain KQ252_08255 PF00237 Ribosomal protein L22p/L17e KQ252_08260 PF00203 Ribosomal protein S19 KQ252_08265 PF00181 Ribosomal Proteins L2, RNA binding domain KQ252_08265 PF03947 Ribosomal Proteins L2, C-terminal domain KQ252_08270 PF00276 Ribosomal protein L23 KQ252_08275 PF00573 Ribosomal protein L4/L1 family KQ252_08280 PF00297 Ribosomal protein L3 KQ252_08285 PF00338 Ribosomal protein S10p/S20e KQ252_08290 PF00117 Glutamine amidotransferase class-I KQ252_08295 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ252_08300 PF05872 Bacterial protein of unknown function (DUF853) KQ252_08310 PF00970 Oxidoreductase FAD-binding domain KQ252_08310 PF00042 Globin KQ252_08310 PF00175 Oxidoreductase NAD-binding domain KQ252_08315 PF02082 Transcriptional regulator KQ252_08320 PF01926 50S ribosome-binding GTPase KQ252_08330 PF00375 Sodium:dicarboxylate symporter family KQ252_08340 PF01553 Acyltransferase KQ252_08355 PF00271 Helicase conserved C-terminal domain KQ252_08355 PF17191 RecG wedge domain KQ252_08355 PF00270 DEAD/DEAH box helicase KQ252_08360 PF00156 Phosphoribosyl transferase domain KQ252_08365 PF00293 NUDIX domain KQ252_08370 PF03641 Possible lysine decarboxylase KQ252_08375 PF01544 CorA-like Mg2+ transporter protein KQ252_08385 PF05494 MlaC protein KQ252_08395 PF02405 Permease MlaE KQ252_08400 PF00005 ABC transporter KQ252_08410 PF00271 Helicase conserved C-terminal domain KQ252_08410 PF12343 Cold shock protein DEAD box A KQ252_08410 PF03880 DbpA RNA binding domain KQ252_08410 PF00270 DEAD/DEAH box helicase KQ252_08415 PF00459 Inositol monophosphatase family KQ252_08420 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KQ252_08420 PF02779 Transketolase, pyrimidine binding domain KQ252_08420 PF02780 Transketolase, C-terminal domain KQ252_08425 PF00925 GTP cyclohydrolase II KQ252_08430 PF01218 Coproporphyrinogen III oxidase KQ252_08435 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KQ252_08435 PF01488 Shikimate / quinate 5-dehydrogenase KQ252_08435 PF08501 Shikimate dehydrogenase substrate binding domain KQ252_08445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_08445 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ252_08445 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_08445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_08455 PF04024 PspC domain KQ252_08460 PF00571 CBS domain KQ252_08485 PF02091 Glycyl-tRNA synthetase alpha subunit KQ252_08490 PF05746 DALR anticodon binding domain KQ252_08490 PF02092 Glycyl-tRNA synthetase beta subunit KQ252_08500 PF00892 EamA-like transporter family KQ252_08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_08505 PF03466 LysR substrate binding domain KQ252_08520 PF05922 Peptidase inhibitor I9 KQ252_08520 PF00082 Subtilase family KQ252_08535 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KQ252_08540 PF04996 Succinylarginine dihydrolase KQ252_08545 PF00171 Aldehyde dehydrogenase family KQ252_08550 PF04958 Arginine N-succinyltransferase beta subunit KQ252_08555 PF00202 Aminotransferase class-III KQ252_08560 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KQ252_08560 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KQ252_08565 PF00324 Amino acid permease KQ252_08570 PF13936 Helix-turn-helix domain KQ252_08570 PF00665 Integrase core domain KQ252_08580 PF08241 Methyltransferase domain KQ252_08600 PF13614 AAA domain KQ252_08605 PF01594 AI-2E family transporter KQ252_08610 PF00080 Copper/zinc superoxide dismutase (SODC) KQ252_08615 PF12805 FUSC-like inner membrane protein yccS KQ252_08620 PF07690 Major Facilitator Superfamily KQ252_08630 PF02525 Flavodoxin-like fold KQ252_08635 PF03992 Antibiotic biosynthesis monooxygenase KQ252_08645 PF01565 FAD binding domain KQ252_08645 PF02913 FAD linked oxidases, C-terminal domain KQ252_08650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KQ252_08650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KQ252_08655 PF00892 EamA-like transporter family KQ252_08660 PF00892 EamA-like transporter family KQ252_08670 PF01925 Sulfite exporter TauE/SafE KQ252_08675 PF01509 TruB family pseudouridylate synthase (N terminal domain) KQ252_08675 PF16198 tRNA pseudouridylate synthase B C-terminal domain KQ252_08675 PF09157 Pseudouridine synthase II TruB, C-terminal KQ252_08680 PF03280 Proteobacterial lipase chaperone protein KQ252_08685 PF00561 alpha/beta hydrolase fold KQ252_08690 PF01245 Ribosomal protein L19 KQ252_08695 PF01746 tRNA (Guanine-1)-methyltransferase KQ252_08700 PF05239 PRC-barrel domain KQ252_08700 PF01782 RimM N-terminal domain KQ252_08705 PF00886 Ribosomal protein S16 KQ252_08745 PF02401 LytB protein KQ252_08750 PF00625 Guanylate kinase KQ252_08755 PF01192 RNA polymerase Rpb6 KQ252_08765 PF02824 TGS domain KQ252_08765 PF04607 Region found in RelA / SpoT proteins KQ252_08765 PF13291 ACT domain KQ252_08770 PF01042 Endoribonuclease L-PSP KQ252_08775 PF04324 BFD-like [2Fe-2S] binding domain KQ252_08780 PF00210 Ferritin-like domain KQ252_08785 PF15864 Protein glycosylation ligase KQ252_08785 PF04932 O-Antigen ligase KQ252_08785 PF11846 Virulence factor membrane-bound polymerase, C-terminal KQ252_08795 PF07963 Prokaryotic N-terminal methylation motif KQ252_08795 PF00114 Pilin (bacterial filament) KQ252_08805 PF04536 TPM domain KQ252_08810 PF04011 LemA family KQ252_08820 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_08820 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KQ252_08825 PF00310 Glutamine amidotransferases class-II KQ252_08825 PF04898 Glutamate synthase central domain KQ252_08825 PF01645 Conserved region in glutamate synthase KQ252_08825 PF01493 GXGXG motif KQ252_08835 PF01761 3-dehydroquinate synthase KQ252_08840 PF01202 Shikimate kinase KQ252_08845 PF03958 Bacterial type II/III secretion system short domain KQ252_08845 PF07660 Secretin and TonB N terminus short domain KQ252_08845 PF11741 AMIN domain KQ252_08845 PF00263 Bacterial type II and III secretion system protein KQ252_08855 PF04350 Pilus assembly protein, PilO KQ252_08860 PF05137 Fimbrial assembly protein (PilN) KQ252_08865 PF11104 Type IV pilus assembly protein PilM; KQ252_08870 PF17092 Penicillin-binding protein OB-like domain KQ252_08870 PF00912 Transglycosylase KQ252_08870 PF00905 Penicillin binding protein transpeptidase domain KQ252_08875 PF13847 Methyltransferase domain KQ252_08885 PF00953 Glycosyl transferase family 4 KQ252_08890 PF01225 Mur ligase family, catalytic domain KQ252_08890 PF02875 Mur ligase family, glutamate ligase domain KQ252_08890 PF08245 Mur ligase middle domain KQ252_08895 PF08245 Mur ligase middle domain KQ252_08895 PF02875 Mur ligase family, glutamate ligase domain KQ252_08895 PF01225 Mur ligase family, catalytic domain KQ252_08900 PF03717 Penicillin-binding Protein dimerisation domain KQ252_08900 PF00905 Penicillin binding protein transpeptidase domain KQ252_08910 PF01795 MraW methylase family KQ252_08925 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ252_08940 PF00324 Amino acid permease KQ252_08970 PF01545 Cation efflux family KQ252_08975 PF00873 AcrB/AcrD/AcrF family KQ252_08980 PF00529 HlyD membrane-fusion protein of T1SS KQ252_08980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ252_09005 PF00005 ABC transporter KQ252_09005 PF12848 ABC transporter KQ252_09010 PF01053 Cys/Met metabolism PLP-dependent enzyme KQ252_09015 PF00106 short chain dehydrogenase KQ252_09020 PF01740 STAS domain KQ252_09020 PF00916 Sulfate permease family KQ252_09025 PF16921 Tex protein YqgF-like domain KQ252_09025 PF09371 Tex-like protein N-terminal domain KQ252_09025 PF00575 S1 RNA binding domain KQ252_09025 PF17674 HHH domain KQ252_09030 PF00486 Transcriptional regulatory protein, C terminal KQ252_09030 PF00072 Response regulator receiver domain KQ252_09035 PF00512 His Kinase A (phospho-acceptor) domain KQ252_09035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_09035 PF00672 HAMP domain KQ252_09045 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KQ252_09045 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KQ252_09050 PF00583 Acetyltransferase (GNAT) family KQ252_09070 PF00475 Imidazoleglycerol-phosphate dehydratase KQ252_09075 PF00117 Glutamine amidotransferase class-I KQ252_09090 PF00977 Histidine biosynthesis protein KQ252_09115 PF01636 Phosphotransferase enzyme family KQ252_09120 PF00977 Histidine biosynthesis protein KQ252_09135 PF00230 Major intrinsic protein KQ252_09160 PF02705 K+ potassium transporter KQ252_09170 PF13356 Arm DNA-binding domain KQ252_09170 PF00589 Phage integrase family KQ252_09205 PF00772 DnaB-like helicase N terminal domain KQ252_09205 PF03796 DnaB-like helicase C terminal domain KQ252_09280 PF13007 Transposase C of IS166 homeodomain KQ252_09280 PF03050 Transposase IS66 family KQ252_09280 PF13817 IS66 C-terminal element KQ252_09280 PF13005 zinc-finger binding domain of transposase IS66 KQ252_09290 PF13676 TIR domain KQ252_09305 PF13676 TIR domain KQ252_09315 PF13005 zinc-finger binding domain of transposase IS66 KQ252_09315 PF03050 Transposase IS66 family KQ252_09315 PF13817 IS66 C-terminal element KQ252_09315 PF13007 Transposase C of IS166 homeodomain KQ252_09355 PF02525 Flavodoxin-like fold KQ252_09360 PF01638 HxlR-like helix-turn-helix KQ252_09395 PF12833 Helix-turn-helix domain KQ252_09395 PF02311 AraC-like ligand binding domain KQ252_09400 PF00248 Aldo/keto reductase family KQ252_09420 PF03466 LysR substrate binding domain KQ252_09420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_09425 PF07690 Major Facilitator Superfamily KQ252_09445 PF01593 Flavin containing amine oxidoreductase KQ252_09450 PF02678 Pirin KQ252_09450 PF05726 Pirin C-terminal cupin domain KQ252_09455 PF00857 Isochorismatase family KQ252_09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_09465 PF00171 Aldehyde dehydrogenase family KQ252_09470 PF00202 Aminotransferase class-III KQ252_09475 PF00155 Aminotransferase class I and II KQ252_09475 PF00392 Bacterial regulatory proteins, gntR family KQ252_09480 PF00324 Amino acid permease KQ252_09490 PF03591 AzlC protein KQ252_09500 PF00436 Single-strand binding protein family KQ252_09505 PF07690 Major Facilitator Superfamily KQ252_09515 PF02581 Thiamine monophosphate synthase KQ252_09515 PF08543 Phosphomethylpyrimidine kinase KQ252_09515 PF03070 TENA/THI-4/PQQC family KQ252_09520 PF06942 GlpM protein KQ252_09530 PF00107 Zinc-binding dehydrogenase KQ252_09530 PF08240 Alcohol dehydrogenase GroES-like domain KQ252_09535 PF00440 Bacterial regulatory proteins, tetR family KQ252_09535 PF16925 Tetracyclin repressor-like, C-terminal domain KQ252_09540 PF00005 ABC transporter KQ252_09540 PF17755 UvrA DNA-binding domain KQ252_09540 PF17760 UvrA interaction domain KQ252_09545 PF00990 Diguanylate cyclase, GGDEF domain KQ252_09555 PF02028 BCCT, betaine/carnitine/choline family transporter KQ252_09570 PF13737 Transposase DDE domain KQ252_09580 PF04341 Protein of unknown function, DUF485 KQ252_09585 PF00672 HAMP domain KQ252_09585 PF00512 His Kinase A (phospho-acceptor) domain KQ252_09585 PF01627 Hpt domain KQ252_09585 PF00072 Response regulator receiver domain KQ252_09585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_09595 PF00072 Response regulator receiver domain KQ252_09595 PF00196 Bacterial regulatory proteins, luxR family KQ252_09600 PF03358 NADPH-dependent FMN reductase KQ252_09605 PF00296 Luciferase-like monooxygenase KQ252_09610 PF01037 Lrp/AsnC ligand binding domain KQ252_09615 PF00857 Isochorismatase family KQ252_09620 PF00501 AMP-binding enzyme KQ252_09620 PF13193 AMP-binding enzyme C-terminal domain KQ252_09620 PF16177 Acetyl-coenzyme A synthetase N-terminus KQ252_09630 PF00924 Mechanosensitive ion channel KQ252_09635 PF04452 RNA methyltransferase KQ252_09640 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KQ252_09645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ252_09670 PF01368 DHH family KQ252_09670 PF02272 DHHA1 domain KQ252_09670 PF17768 RecJ OB domain KQ252_09675 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KQ252_09675 PF01243 Pyridoxamine 5'-phosphate oxidase KQ252_09680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ252_09680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ252_09680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ252_09680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ252_09685 PF00478 IMP dehydrogenase / GMP reductase domain KQ252_09685 PF00571 CBS domain KQ252_09690 PF03692 Putative zinc- or iron-chelating domain KQ252_09695 PF01613 Flavin reductase like domain KQ252_09695 PF00258 Flavodoxin KQ252_09700 PF07715 TonB-dependent Receptor Plug Domain KQ252_09700 PF00593 TonB dependent receptor KQ252_09705 PF01169 Uncharacterized protein family UPF0016 KQ252_09715 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KQ252_09715 PF00364 Biotin-requiring enzyme KQ252_09715 PF02817 e3 binding domain KQ252_09720 PF00456 Transketolase, thiamine diphosphate binding domain KQ252_09720 PF17831 Pyruvate dehydrogenase E1 component middle domain KQ252_09725 PF01551 Peptidase family M23 KQ252_09735 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KQ252_09740 PF12327 FtsZ family, C-terminal domain KQ252_09740 PF00091 Tubulin/FtsZ family, GTPase domain KQ252_09745 PF02491 SHS2 domain inserted in FTSA KQ252_09750 PF03799 Cell division protein FtsQ KQ252_09750 PF08478 POTRA domain, FtsQ-type KQ252_09755 PF07478 D-ala D-ala ligase C-terminus KQ252_09755 PF01820 D-ala D-ala ligase N-terminus KQ252_09760 PF01225 Mur ligase family, catalytic domain KQ252_09760 PF02875 Mur ligase family, glutamate ligase domain KQ252_09760 PF08245 Mur ligase middle domain KQ252_09765 PF04101 Glycosyltransferase family 28 C-terminal domain KQ252_09765 PF03033 Glycosyltransferase family 28 N-terminal domain KQ252_09770 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KQ252_09770 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KQ252_09780 PF07715 TonB-dependent Receptor Plug Domain KQ252_09780 PF00593 TonB dependent receptor KQ252_09785 PF00156 Phosphoribosyl transferase domain KQ252_09790 PF03372 Endonuclease/Exonuclease/phosphatase family KQ252_09795 PF03960 ArsC family KQ252_09805 PF07859 alpha/beta hydrolase fold KQ252_09810 PF07694 5TMR of 5TMR-LYT KQ252_09810 PF00990 Diguanylate cyclase, GGDEF domain KQ252_09815 PF02683 Cytochrome C biogenesis protein transmembrane region KQ252_09815 PF11412 Disulphide bond corrector protein DsbC KQ252_09845 PF00576 HIUase/Transthyretin family KQ252_09850 PF00860 Permease family KQ252_09860 PF01494 FAD binding domain KQ252_09865 PF03561 Allantoicase repeat KQ252_09870 PF04115 Ureidoglycolate lyase KQ252_09875 PF00106 short chain dehydrogenase KQ252_09880 PF00204 DNA gyrase B KQ252_09880 PF00986 DNA gyrase B subunit, carboxyl terminus KQ252_09880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_09880 PF01751 Toprim domain KQ252_09885 PF05728 Uncharacterised protein family (UPF0227) KQ252_09915 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KQ252_09915 PF04717 Type VI secretion system, phage-baseplate injector KQ252_09915 PF13296 Putative type VI secretion system Rhs element Vgr KQ252_09920 PF02600 Disulfide bond formation protein DsbB KQ252_09925 PF04262 Glutamate-cysteine ligase KQ252_09940 PF04286 Protein of unknown function (DUF445) KQ252_09945 PF00155 Aminotransferase class I and II KQ252_09950 PF01554 MatE KQ252_09955 PF00106 short chain dehydrogenase KQ252_09965 PF00072 Response regulator receiver domain KQ252_09965 PF00486 Transcriptional regulatory protein, C terminal KQ252_09970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_09970 PF00512 His Kinase A (phospho-acceptor) domain KQ252_09970 PF00989 PAS fold KQ252_09970 PF11808 Phosphate regulon sensor protein PhoR KQ252_09980 PF00665 Integrase core domain KQ252_09980 PF13936 Helix-turn-helix domain KQ252_09990 PF03069 Acetamidase/Formamidase family KQ252_09995 PF02666 Phosphatidylserine decarboxylase KQ252_10000 PF00581 Rhodanese-like domain KQ252_10005 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KQ252_10005 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KQ252_10015 PF00199 Catalase KQ252_10015 PF06628 Catalase-related immune-responsive KQ252_10020 PF02580 D-Tyr-tRNA(Tyr) deacylase KQ252_10045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KQ252_10045 PF00925 GTP cyclohydrolase II KQ252_10050 PF00885 6,7-dimethyl-8-ribityllumazine synthase KQ252_10055 PF01029 NusB family KQ252_10060 PF02769 AIR synthase related protein, C-terminal domain KQ252_10060 PF00586 AIR synthase related protein, N-terminal domain KQ252_10065 PF04608 Phosphatidylglycerophosphatase A KQ252_10070 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_10070 PF14602 Hexapeptide repeat of succinyl-transferase KQ252_10070 PF12804 MobA-like NTP transferase domain KQ252_10075 PF01380 SIS domain KQ252_10080 PF01177 Asp/Glu/Hydantoin racemase KQ252_10095 PF00491 Arginase family KQ252_10100 PF01979 Amidohydrolase family KQ252_10105 PF00324 Amino acid permease KQ252_10110 PF00221 Aromatic amino acid lyase KQ252_10115 PF17392 Urocanase C-terminal domain KQ252_10115 PF17391 Urocanase N-terminal domain KQ252_10115 PF01175 Urocanase Rossmann-like domain KQ252_10120 PF05962 HutD KQ252_10125 PF00392 Bacterial regulatory proteins, gntR family KQ252_10125 PF07702 UTRA domain KQ252_10135 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ252_10135 PF07683 Cobalamin synthesis protein cobW C-terminal domain KQ252_10145 PF00324 Amino acid permease KQ252_10155 PF14497 Glutathione S-transferase, C-terminal domain KQ252_10155 PF02798 Glutathione S-transferase, N-terminal domain KQ252_10160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ252_10170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ252_10175 PF04463 Protein of unknown function (DUF523) KQ252_10180 PF01554 MatE KQ252_10185 PF01758 Sodium Bile acid symporter family KQ252_10190 PF00857 Isochorismatase family KQ252_10195 PF00701 Dihydrodipicolinate synthetase family KQ252_10205 PF01259 SAICAR synthetase KQ252_10215 PF01226 Formate/nitrite transporter KQ252_10220 PF16193 AAA C-terminal domain KQ252_10220 PF00004 ATPase family associated with various cellular activities (AAA) KQ252_10220 PF12002 MgsA AAA+ ATPase C terminal KQ252_10230 PF03692 Putative zinc- or iron-chelating domain KQ252_10235 PF07043 Protein of unknown function (DUF1328) KQ252_10250 PF10576 Iron-sulfur binding domain of endonuclease III KQ252_10250 PF00633 Helix-hairpin-helix motif KQ252_10250 PF00730 HhH-GPD superfamily base excision DNA repair protein KQ252_10250 PF14815 NUDIX domain KQ252_10265 PF03352 Methyladenine glycosylase KQ252_10270 PF08240 Alcohol dehydrogenase GroES-like domain KQ252_10270 PF00107 Zinc-binding dehydrogenase KQ252_10275 PF00155 Aminotransferase class I and II KQ252_10275 PF00392 Bacterial regulatory proteins, gntR family KQ252_10290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_10290 PF03466 LysR substrate binding domain KQ252_10295 PF00248 Aldo/keto reductase family KQ252_10300 PF07690 Major Facilitator Superfamily KQ252_10310 PF01113 Dihydrodipicolinate reductase, N-terminus KQ252_10310 PF05173 Dihydrodipicolinate reductase, C-terminus KQ252_10320 PF00684 DnaJ central domain KQ252_10320 PF01556 DnaJ C terminal domain KQ252_10320 PF00226 DnaJ domain KQ252_10330 PF00873 AcrB/AcrD/AcrF family KQ252_10335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ252_10340 PF08361 MAATS-type transcriptional repressor, C-terminal region KQ252_10340 PF00440 Bacterial regulatory proteins, tetR family KQ252_10345 PF00311 Phosphoenolpyruvate carboxylase KQ252_10350 PF00860 Permease family KQ252_10355 PF03466 LysR substrate binding domain KQ252_10355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_10370 PF00920 Dehydratase family KQ252_10375 PF02911 Formyl transferase, C-terminal domain KQ252_10375 PF00551 Formyl transferase KQ252_10380 PF01189 16S rRNA methyltransferase RsmB/F KQ252_10380 PF01029 NusB family KQ252_10390 PF00209 Sodium:neurotransmitter symporter family KQ252_10435 PF00579 tRNA synthetases class I (W and Y) KQ252_10440 PF03702 Anhydro-N-acetylmuramic acid kinase KQ252_10445 PF00561 alpha/beta hydrolase fold KQ252_10450 PF01521 Iron-sulphur cluster biosynthesis KQ252_10470 PF00005 ABC transporter KQ252_10470 PF12848 ABC transporter KQ252_10475 PF09335 SNARE associated Golgi protein KQ252_10485 PF01751 Toprim domain KQ252_10485 PF00986 DNA gyrase B subunit, carboxyl terminus KQ252_10485 PF18053 DNA gyrase B subunit insert domain KQ252_10485 PF00204 DNA gyrase B KQ252_10485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_10490 PF02463 RecF/RecN/SMC N terminal domain KQ252_10495 PF00712 DNA polymerase III beta subunit, N-terminal domain KQ252_10495 PF02767 DNA polymerase III beta subunit, central domain KQ252_10495 PF02768 DNA polymerase III beta subunit, C-terminal domain KQ252_10505 PF00308 Bacterial dnaA protein KQ252_10505 PF08299 Bacterial dnaA protein helix-turn-helix KQ252_10505 PF11638 DnaA N-terminal domain KQ252_10510 PF00468 Ribosomal protein L34 KQ252_10515 PF00825 Ribonuclease P KQ252_10520 PF01809 Putative membrane protein insertion efficiency factor KQ252_10525 PF14849 YidC periplasmic domain KQ252_10525 PF02096 60Kd inner membrane protein KQ252_10530 PF01926 50S ribosome-binding GTPase KQ252_10530 PF12631 MnmE helical domain KQ252_10530 PF10396 GTP-binding protein TrmE N-terminus KQ252_10535 PF02583 Metal-sensitive transcriptional repressor KQ252_10540 PF01545 Cation efflux family KQ252_10540 PF16916 Dimerisation domain of Zinc Transporter KQ252_10545 PF10411 Disulfide bond isomerase protein N-terminus KQ252_10545 PF13098 Thioredoxin-like domain KQ252_10560 PF01979 Amidohydrolase family KQ252_10565 PF00355 Rieske [2Fe-2S] domain KQ252_10570 PF03738 Glutathionylspermidine synthase preATP-grasp KQ252_10585 PF03741 Integral membrane protein TerC family KQ252_10590 PF01569 PAP2 superfamily KQ252_10600 PF01225 Mur ligase family, catalytic domain KQ252_10600 PF02875 Mur ligase family, glutamate ligase domain KQ252_10600 PF08245 Mur ligase middle domain KQ252_10610 PF00731 AIR carboxylase KQ252_10615 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KQ252_10615 PF02222 ATP-grasp domain KQ252_10620 PF13406 Transglycosylase SLT domain KQ252_10640 PF00012 Hsp70 protein KQ252_10645 PF01025 GrpE KQ252_10670 PF07859 alpha/beta hydrolase fold KQ252_10675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KQ252_10715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ252_10720 PF01252 Signal peptidase (SPase) II KQ252_10725 PF08264 Anticodon-binding domain of tRNA KQ252_10725 PF00133 tRNA synthetases class I (I, L, M and V) KQ252_10725 PF06827 Zinc finger found in FPG and IleRS KQ252_10730 PF06574 FAD synthetase KQ252_10730 PF01687 Riboflavin kinase KQ252_10740 PF01048 Phosphorylase superfamily KQ252_10745 PF08362 YcdC-like protein, C-terminal region KQ252_10745 PF00440 Bacterial regulatory proteins, tetR family KQ252_10750 PF00005 ABC transporter KQ252_10755 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_10760 PF00296 Luciferase-like monooxygenase KQ252_10765 PF09084 NMT1/THI5 like KQ252_10770 PF09084 NMT1/THI5 like KQ252_10775 PF00696 Amino acid kinase family KQ252_10775 PF00583 Acetyltransferase (GNAT) family KQ252_10790 PF00106 short chain dehydrogenase KQ252_10795 PF13419 Haloacid dehalogenase-like hydrolase KQ252_10805 PF01323 DSBA-like thioredoxin domain KQ252_10810 PF00440 Bacterial regulatory proteins, tetR family KQ252_10815 PF00440 Bacterial regulatory proteins, tetR family KQ252_10820 PF00175 Oxidoreductase NAD-binding domain KQ252_10825 PF00487 Fatty acid desaturase KQ252_10830 PF03725 3' exoribonuclease family, domain 2 KQ252_10830 PF01138 3' exoribonuclease family, domain 1 KQ252_10840 PF05506 Domain of unknown function (DUF756) KQ252_10840 PF04185 Phosphoesterase family KQ252_10850 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KQ252_10850 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KQ252_10855 PF01510 N-acetylmuramoyl-L-alanine amidase KQ252_10860 PF03023 Lipid II flippase MurJ KQ252_10865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ252_10865 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KQ252_10870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ252_10870 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KQ252_10875 PF13614 AAA domain KQ252_10875 PF13807 G-rich domain on putative tyrosine kinase KQ252_10875 PF02706 Chain length determinant protein KQ252_10880 PF01451 Low molecular weight phosphotyrosine protein phosphatase KQ252_10885 PF02563 Polysaccharide biosynthesis/export protein KQ252_10885 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KQ252_10885 PF10531 SLBB domain KQ252_10890 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KQ252_10890 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KQ252_10890 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KQ252_10895 PF01370 NAD dependent epimerase/dehydratase family KQ252_10910 PF13477 Glycosyl transferase 4-like KQ252_10910 PF00534 Glycosyl transferases group 1 KQ252_10915 PF02397 Bacterial sugar transferase KQ252_10920 PF17836 PglD N-terminal domain KQ252_10920 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_10920 PF14602 Hexapeptide repeat of succinyl-transferase KQ252_10925 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KQ252_10930 PF02719 Polysaccharide biosynthesis protein KQ252_10935 PF00483 Nucleotidyl transferase KQ252_10940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KQ252_10940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KQ252_10940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KQ252_10945 PF00342 Phosphoglucose isomerase KQ252_10950 PF16363 GDP-mannose 4,6 dehydratase KQ252_10955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ252_10955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ252_10955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ252_10955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ252_10960 PF02652 L-lactate permease KQ252_10965 PF00392 Bacterial regulatory proteins, gntR family KQ252_10965 PF07729 FCD domain KQ252_10970 PF01070 FMN-dependent dehydrogenase KQ252_10975 PF09330 D-lactate dehydrogenase, membrane binding KQ252_10975 PF01565 FAD binding domain KQ252_10980 PF00155 Aminotransferase class I and II KQ252_10990 PF07729 FCD domain KQ252_10990 PF00392 Bacterial regulatory proteins, gntR family KQ252_11000 PF00285 Citrate synthase, C-terminal domain KQ252_11005 PF00330 Aconitase family (aconitate hydratase) KQ252_11005 PF00694 Aconitase C-terminal domain KQ252_11025 PF00293 NUDIX domain KQ252_11035 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ252_11035 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ252_11055 PF00849 RNA pseudouridylate synthase KQ252_11070 PF00593 TonB dependent receptor KQ252_11070 PF07715 TonB-dependent Receptor Plug Domain KQ252_11080 PF01037 Lrp/AsnC ligand binding domain KQ252_11085 PF01266 FAD dependent oxidoreductase KQ252_11090 PF00842 Alanine racemase, C-terminal domain KQ252_11090 PF01168 Alanine racemase, N-terminal domain KQ252_11095 PF01042 Endoribonuclease L-PSP KQ252_11100 PF00324 Amino acid permease KQ252_11105 PF00324 Amino acid permease KQ252_11115 PF00171 Aldehyde dehydrogenase family KQ252_11120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ252_11120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ252_11125 PF00501 AMP-binding enzyme KQ252_11125 PF13193 AMP-binding enzyme C-terminal domain KQ252_11130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_11130 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_11130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_11135 PF00378 Enoyl-CoA hydratase/isomerase KQ252_11140 PF00378 Enoyl-CoA hydratase/isomerase KQ252_11145 PF07690 Major Facilitator Superfamily KQ252_11145 PF00083 Sugar (and other) transporter KQ252_11150 PF00765 Autoinducer synthase KQ252_11160 PF13737 Transposase DDE domain KQ252_11165 PF03472 Autoinducer binding domain KQ252_11165 PF00196 Bacterial regulatory proteins, luxR family KQ252_11170 PF00501 AMP-binding enzyme KQ252_11175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_11175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_11175 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_11180 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ252_11180 PF16197 Ketoacyl-synthetase C-terminal extension KQ252_11180 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ252_11180 PF14765 Polyketide synthase dehydratase KQ252_11180 PF00550 Phosphopantetheine attachment site KQ252_11180 PF08242 Methyltransferase domain KQ252_11180 PF00975 Thioesterase domain KQ252_11185 PF00501 AMP-binding enzyme KQ252_11185 PF13193 AMP-binding enzyme C-terminal domain KQ252_11185 PF00668 Condensation domain KQ252_11185 PF00550 Phosphopantetheine attachment site KQ252_11185 PF00975 Thioesterase domain KQ252_11200 PF16363 GDP-mannose 4,6 dehydratase KQ252_11205 PF01648 4'-phosphopantetheinyl transferase superfamily KQ252_11215 PF01722 BolA-like protein KQ252_11225 PF13614 AAA domain KQ252_11240 PF09335 SNARE associated Golgi protein KQ252_11245 PF07681 DoxX KQ252_11250 PF04286 Protein of unknown function (DUF445) KQ252_11255 PF00958 GMP synthase C terminal domain KQ252_11255 PF02540 NAD synthase KQ252_11255 PF00117 Glutamine amidotransferase class-I KQ252_11260 PF13427 Domain of unknown function (DUF4111) KQ252_11260 PF01909 Nucleotidyltransferase domain KQ252_11265 PF03551 Transcriptional regulator PadR-like family KQ252_11275 PF02678 Pirin KQ252_11275 PF05726 Pirin C-terminal cupin domain KQ252_11295 PF03485 Arginyl tRNA synthetase N terminal domain KQ252_11295 PF05746 DALR anticodon binding domain KQ252_11295 PF00750 tRNA synthetases class I (R) KQ252_11300 PF03949 Malic enzyme, NAD binding domain KQ252_11300 PF00390 Malic enzyme, N-terminal domain KQ252_11305 PF04261 Dyp-type peroxidase family KQ252_11310 PF01810 LysE type translocator KQ252_11315 PF00950 ABC 3 transport family KQ252_11320 PF00005 ABC transporter KQ252_11340 PF00119 ATP synthase A chain KQ252_11345 PF00137 ATP synthase subunit C KQ252_11350 PF00430 ATP synthase B/B' CF(0) KQ252_11355 PF00213 ATP synthase delta (OSCP) subunit KQ252_11360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ252_11360 PF00306 ATP synthase alpha/beta chain, C terminal domain KQ252_11360 PF02874 ATP synthase alpha/beta family, beta-barrel domain KQ252_11365 PF00231 ATP synthase KQ252_11370 PF02874 ATP synthase alpha/beta family, beta-barrel domain KQ252_11370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ252_11375 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KQ252_11385 PF00255 Glutathione peroxidase KQ252_11395 PF07690 Major Facilitator Superfamily KQ252_11400 PF00440 Bacterial regulatory proteins, tetR family KQ252_11405 PF00892 EamA-like transporter family KQ252_11410 PF01300 Telomere recombination KQ252_11415 PF02481 DNA recombination-mediator protein A KQ252_11415 PF17782 DprA winged helix domain KQ252_11425 PF01327 Polypeptide deformylase KQ252_11435 PF07715 TonB-dependent Receptor Plug Domain KQ252_11435 PF00593 TonB dependent receptor KQ252_11450 PF00440 Bacterial regulatory proteins, tetR family KQ252_11485 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_11495 PF03358 NADPH-dependent FMN reductase KQ252_11515 PF11842 Domain of unknown function (DUF3362) KQ252_11515 PF04055 Radical SAM superfamily KQ252_11515 PF08497 Radical SAM N-terminal KQ252_11530 PF00817 impB/mucB/samB family KQ252_11530 PF11799 impB/mucB/samB family C-terminal domain KQ252_11530 PF11798 IMS family HHH motif KQ252_11540 PF07690 Major Facilitator Superfamily KQ252_11545 PF03641 Possible lysine decarboxylase KQ252_11550 PF03471 Transporter associated domain KQ252_11550 PF03741 Integral membrane protein TerC family KQ252_11555 PF02810 SEC-C motif KQ252_11560 PF03458 UPF0126 domain KQ252_11565 PF07690 Major Facilitator Superfamily KQ252_11570 PF03989 DNA gyrase C-terminal domain, beta-propeller KQ252_11570 PF00521 DNA gyrase/topoisomerase IV, subunit A KQ252_11575 PF13193 AMP-binding enzyme C-terminal domain KQ252_11575 PF00501 AMP-binding enzyme KQ252_11590 PF00719 Inorganic pyrophosphatase KQ252_11595 PF03573 outer membrane porin, OprD family KQ252_11610 PF00701 Dihydrodipicolinate synthetase family KQ252_11620 PF00392 Bacterial regulatory proteins, gntR family KQ252_11620 PF00155 Aminotransferase class I and II KQ252_11625 PF01078 Magnesium chelatase, subunit ChlI KQ252_11625 PF13335 Magnesium chelatase, subunit ChlI C-terminal KQ252_11635 PF00665 Integrase core domain KQ252_11655 PF00872 Transposase, Mutator family KQ252_11670 PF00582 Universal stress protein family KQ252_11675 PF01740 STAS domain KQ252_11675 PF00916 Sulfate permease family KQ252_11685 PF01078 Magnesium chelatase, subunit ChlI KQ252_11685 PF13335 Magnesium chelatase, subunit ChlI C-terminal KQ252_11695 PF00543 Nitrogen regulatory protein P-II KQ252_11700 PF00909 Ammonium Transporter Family KQ252_11705 PF03477 ATP cone domain KQ252_11710 PF01872 RibD C-terminal domain KQ252_11710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KQ252_11720 PF00677 Lumazine binding domain KQ252_11740 PF00883 Cytosol aminopeptidase family, catalytic domain KQ252_11740 PF02789 Cytosol aminopeptidase family, N-terminal domain KQ252_11750 PF03739 Lipopolysaccharide export system permease LptF/LptG KQ252_11755 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KQ252_11755 PF01676 Metalloenzyme superfamily KQ252_11760 PF00595 PDZ domain KQ252_11760 PF03572 Peptidase family S41 KQ252_11765 PF00072 Response regulator receiver domain KQ252_11765 PF02954 Bacterial regulatory protein, Fis family KQ252_11765 PF00158 Sigma-54 interaction domain KQ252_11770 PF00512 His Kinase A (phospho-acceptor) domain KQ252_11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_11775 PF00196 Bacterial regulatory proteins, luxR family KQ252_11775 PF00072 Response regulator receiver domain KQ252_11780 PF00768 D-alanyl-D-alanine carboxypeptidase KQ252_11785 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_11790 PF01842 ACT domain KQ252_11790 PF00742 Homoserine dehydrogenase KQ252_11790 PF03447 Homoserine dehydrogenase, NAD binding domain KQ252_11795 PF13098 Thioredoxin-like domain KQ252_11795 PF10411 Disulfide bond isomerase protein N-terminus KQ252_11800 PF00589 Phage integrase family KQ252_11800 PF02899 Phage integrase, N-terminal SAM-like domain KQ252_11810 PF07670 Nucleoside recognition KQ252_11810 PF02421 Ferrous iron transport protein B KQ252_11810 PF07664 Ferrous iron transport protein B C terminus KQ252_11820 PF02875 Mur ligase family, glutamate ligase domain KQ252_11820 PF08245 Mur ligase middle domain KQ252_11825 PF01098 Cell cycle protein KQ252_11830 PF00749 tRNA synthetases class I (E and Q), catalytic domain KQ252_11835 PF01258 Prokaryotic dksA/traR C4-type zinc finger KQ252_11840 PF00149 Calcineurin-like phosphoesterase KQ252_11845 PF00293 NUDIX domain KQ252_11850 PF01964 Radical SAM ThiC family KQ252_11850 PF13667 ThiC-associated domain KQ252_11865 PF00892 EamA-like transporter family KQ252_11870 PF02321 Outer membrane efflux protein KQ252_11875 PF01895 PhoU domain KQ252_11880 PF04362 Bacterial Fe(2+) trafficking KQ252_11885 PF14698 Argininosuccinate lyase C-terminal KQ252_11885 PF00206 Lyase KQ252_11890 PF06580 Histidine kinase KQ252_11890 PF07694 5TMR of 5TMR-LYT KQ252_11890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_11895 PF04397 LytTr DNA-binding domain KQ252_11895 PF00072 Response regulator receiver domain KQ252_11900 PF03900 Porphobilinogen deaminase, C-terminal domain KQ252_11900 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KQ252_11925 PF00816 H-NS histone family KQ252_11940 PF00263 Bacterial type II and III secretion system protein KQ252_11940 PF03958 Bacterial type II/III secretion system short domain KQ252_11945 PF00498 FHA domain KQ252_11945 PF12401 Protein of unknown function (DUF2662) KQ252_11950 PF13419 Haloacid dehalogenase-like hydrolase KQ252_11955 PF04715 Anthranilate synthase component I, N terminal region KQ252_11955 PF00425 chorismate binding enzyme KQ252_11980 PF00009 Elongation factor Tu GTP binding domain KQ252_11980 PF03144 Elongation factor Tu domain 2 KQ252_11980 PF03143 Elongation factor Tu C-terminal domain KQ252_11990 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KQ252_11995 PF02357 Transcription termination factor nusG KQ252_11995 PF00467 KOW motif KQ252_12000 PF00298 Ribosomal protein L11, RNA binding domain KQ252_12000 PF03946 Ribosomal protein L11, N-terminal domain KQ252_12005 PF00687 Ribosomal protein L1p/L10e family KQ252_12010 PF00466 Ribosomal protein L10 KQ252_12015 PF16320 Ribosomal protein L7/L12 dimerisation domain KQ252_12015 PF00542 Ribosomal protein L7/L12 C-terminal domain KQ252_12020 PF04565 RNA polymerase Rpb2, domain 3 KQ252_12020 PF00562 RNA polymerase Rpb2, domain 6 KQ252_12020 PF04560 RNA polymerase Rpb2, domain 7 KQ252_12020 PF04561 RNA polymerase Rpb2, domain 2 KQ252_12020 PF10385 RNA polymerase beta subunit external 1 domain KQ252_12020 PF04563 RNA polymerase beta subunit KQ252_12025 PF05000 RNA polymerase Rpb1, domain 4 KQ252_12025 PF04997 RNA polymerase Rpb1, domain 1 KQ252_12025 PF00623 RNA polymerase Rpb1, domain 2 KQ252_12025 PF04983 RNA polymerase Rpb1, domain 3 KQ252_12025 PF04998 RNA polymerase Rpb1, domain 5 KQ252_12050 PF13726 Na+-H+ antiporter family KQ252_12050 PF03553 Na+/H+ antiporter family KQ252_12065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_12065 PF00183 Hsp90 protein KQ252_12080 PF01323 DSBA-like thioredoxin domain KQ252_12090 PF00376 MerR family regulatory protein KQ252_12090 PF09278 MerR, DNA binding KQ252_12105 PF02803 Thiolase, C-terminal domain KQ252_12105 PF00108 Thiolase, N-terminal domain KQ252_12110 PF00378 Enoyl-CoA hydratase/isomerase KQ252_12110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ252_12110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ252_12120 PF13737 Transposase DDE domain KQ252_12140 PF01541 GIY-YIG catalytic domain KQ252_12140 PF02151 UvrB/uvrC motif KQ252_12140 PF08459 UvrC Helix-hairpin-helix N-terminal KQ252_12150 PF01066 CDP-alcohol phosphatidyltransferase KQ252_12155 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KQ252_12155 PF12833 Helix-turn-helix domain KQ252_12155 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ252_12155 PF02805 Metal binding domain of Ada KQ252_12180 PF13533 Biotin-lipoyl like KQ252_12185 PF03652 Holliday junction resolvase KQ252_12190 PF02622 Uncharacterized ACR, COG1678 KQ252_12195 PF02463 RecF/RecN/SMC N terminal domain KQ252_12205 PF06865 Pyrimidine/purine nucleoside phosphorylase KQ252_12210 PF00588 SpoU rRNA Methylase family KQ252_12210 PF08032 RNA 2'-O ribose methyltransferase substrate binding KQ252_12220 PF01121 Dephospho-CoA kinase KQ252_12225 PF06750 Bacterial Peptidase A24 N-terminal domain KQ252_12225 PF01478 Type IV leader peptidase family KQ252_12230 PF00482 Type II secretion system (T2SS), protein F KQ252_12235 PF00437 Type II/IV secretion system protein KQ252_12235 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KQ252_12240 PF00121 Triosephosphate isomerase KQ252_12245 PF03840 Preprotein translocase SecG subunit KQ252_12265 PF02576 RimP N-terminal domain KQ252_12265 PF17384 RimP C-terminal SH3 domain KQ252_12270 PF13184 NusA-like KH domain KQ252_12270 PF08529 NusA N-terminal domain KQ252_12270 PF00575 S1 RNA binding domain KQ252_12275 PF04760 Translation initiation factor IF-2, N-terminal region KQ252_12275 PF08364 Bacterial translation initiation factor IF-2 associated region KQ252_12275 PF00009 Elongation factor Tu GTP binding domain KQ252_12275 PF11987 Translation-initiation factor 2 KQ252_12280 PF02033 Ribosome-binding factor A KQ252_12285 PF03334 Na+/H+ antiporter subunit KQ252_12290 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KQ252_12295 PF01899 Na+/H+ ion antiporter subunit KQ252_12300 PF00361 Proton-conducting membrane transporter KQ252_12305 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KQ252_12310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KQ252_12310 PF00361 Proton-conducting membrane transporter KQ252_12310 PF13244 Domain of unknown function (DUF4040) KQ252_12310 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KQ252_12325 PF01502 Phosphoribosyl-AMP cyclohydrolase KQ252_12330 PF01494 FAD binding domain KQ252_12335 PF03109 ABC1 family KQ252_12345 PF01209 ubiE/COQ5 methyltransferase family KQ252_12355 PF03976 Polyphosphate kinase 2 (PPK2) KQ252_12365 PF17946 RecC C-terminal domain KQ252_12370 PF12705 PD-(D/E)XK nuclease superfamily KQ252_12370 PF00580 UvrD/REP helicase N-terminal domain KQ252_12370 PF13361 UvrD-like helicase C-terminal domain KQ252_12375 PF13538 UvrD-like helicase C-terminal domain KQ252_12380 PF00144 Beta-lactamase KQ252_12385 PF00312 Ribosomal protein S15 KQ252_12390 PF00575 S1 RNA binding domain KQ252_12390 PF03725 3' exoribonuclease family, domain 2 KQ252_12390 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KQ252_12390 PF00013 KH domain KQ252_12390 PF01138 3' exoribonuclease family, domain 1 KQ252_12395 PF01544 CorA-like Mg2+ transporter protein KQ252_12405 PF00226 DnaJ domain KQ252_12405 PF01556 DnaJ C terminal domain KQ252_12415 PF01430 Hsp33 protein KQ252_12420 PF00999 Sodium/hydrogen exchanger family KQ252_12420 PF02254 TrkA-N domain KQ252_12425 PF00270 DEAD/DEAH box helicase KQ252_12425 PF00271 Helicase conserved C-terminal domain KQ252_12425 PF17764 3′ DNA-binding domain (3′BD) KQ252_12425 PF18074 Primosomal protein N C-terminal domain KQ252_12425 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KQ252_12430 PF00482 Type II secretion system (T2SS), protein F KQ252_12435 PF07963 Prokaryotic N-terminal methylation motif KQ252_12435 PF08334 Type II secretion system (T2SS), protein G KQ252_12445 PF01588 Putative tRNA binding domain KQ252_12450 PF00795 Carbon-nitrogen hydrolase KQ252_12455 PF03471 Transporter associated domain KQ252_12455 PF00571 CBS domain KQ252_12460 PF01206 Sulfurtransferase TusA KQ252_12480 PF01177 Asp/Glu/Hydantoin racemase KQ252_12490 PF00762 Ferrochelatase KQ252_12495 PF00753 Metallo-beta-lactamase superfamily KQ252_12500 PF03884 DNA gyrase inhibitor YacG KQ252_12510 PF13247 4Fe-4S dicluster domain KQ252_12510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KQ252_12510 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_12520 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KQ252_12530 PF01197 Ribosomal protein L31 KQ252_12535 PF03109 ABC1 family KQ252_12540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ252_12540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_12545 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KQ252_12545 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_12545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_12550 PF01554 MatE KQ252_12560 PF06969 HemN C-terminal domain KQ252_12560 PF04055 Radical SAM superfamily KQ252_12565 PF00106 short chain dehydrogenase KQ252_12570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_12570 PF03466 LysR substrate binding domain KQ252_12585 PF00501 AMP-binding enzyme KQ252_12585 PF13193 AMP-binding enzyme C-terminal domain KQ252_12590 PF12111 Polyribonucleotide phosphorylase C terminal KQ252_12590 PF10150 Ribonuclease E/G family KQ252_12590 PF00575 S1 RNA binding domain KQ252_12595 PF00849 RNA pseudouridylate synthase KQ252_12595 PF01479 S4 domain KQ252_12600 PF13419 Haloacid dehalogenase-like hydrolase KQ252_12605 PF08279 HTH domain KQ252_12605 PF13280 WYL domain KQ252_12610 PF02798 Glutathione S-transferase, N-terminal domain KQ252_12620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_12620 PF03466 LysR substrate binding domain KQ252_12625 PF12706 Beta-lactamase superfamily domain KQ252_12630 PF00141 Peroxidase KQ252_12635 PF02896 PEP-utilising enzyme, TIM barrel domain KQ252_12635 PF01590 GAF domain KQ252_12635 PF05524 PEP-utilising enzyme, N-terminal KQ252_12635 PF00391 PEP-utilising enzyme, mobile domain KQ252_12640 PF00293 NUDIX domain KQ252_12660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_12660 PF03466 LysR substrate binding domain KQ252_12670 PF00330 Aconitase family (aconitate hydratase) KQ252_12675 PF00694 Aconitase C-terminal domain KQ252_12685 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ252_12700 PF01176 Translation initiation factor 1A / IF-1 KQ252_12710 PF01416 tRNA pseudouridine synthase KQ252_12730 PF02774 Semialdehyde dehydrogenase, dimerisation domain KQ252_12730 PF01118 Semialdehyde dehydrogenase, NAD binding domain KQ252_12740 PF00375 Sodium:dicarboxylate symporter family KQ252_12750 PF03279 Bacterial lipid A biosynthesis acyltransferase KQ252_12755 PF01810 LysE type translocator KQ252_12760 PF16326 ABC transporter C-terminal domain KQ252_12760 PF12848 ABC transporter KQ252_12760 PF00005 ABC transporter KQ252_12765 PF04102 SlyX KQ252_12770 PF08240 Alcohol dehydrogenase GroES-like domain KQ252_12770 PF00107 Zinc-binding dehydrogenase KQ252_12775 PF01638 HxlR-like helix-turn-helix KQ252_12785 PF01751 Toprim domain KQ252_12785 PF01396 Topoisomerase DNA binding C4 zinc finger KQ252_12785 PF08272 Topoisomerase I zinc-ribbon-like KQ252_12785 PF01131 DNA topoisomerase KQ252_12800 PF13361 UvrD-like helicase C-terminal domain KQ252_12800 PF00580 UvrD/REP helicase N-terminal domain KQ252_12805 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KQ252_12825 PF00999 Sodium/hydrogen exchanger family KQ252_12825 PF02254 TrkA-N domain KQ252_12830 PF00471 Ribosomal protein L33 KQ252_12835 PF00830 Ribosomal L28 family KQ252_12840 PF00171 Aldehyde dehydrogenase family KQ252_12850 PF01842 ACT domain KQ252_12850 PF00551 Formyl transferase KQ252_12860 PF01618 MotA/TolQ/ExbB proton channel family KQ252_12870 PF01625 Peptide methionine sulfoxide reductase KQ252_12880 PF00186 Dihydrofolate reductase KQ252_12885 PF00303 Thymidylate synthase KQ252_12900 PF01790 Prolipoprotein diacylglyceryl transferase KQ252_12920 PF00902 Sec-independent protein translocase protein (TatC) KQ252_12925 PF02416 mttA/Hcf106 family KQ252_12930 PF02416 mttA/Hcf106 family KQ252_12940 PF01725 Ham1 family KQ252_12950 PF00561 alpha/beta hydrolase fold KQ252_12950 PF07021 Methionine biosynthesis protein MetW KQ252_12955 PF00561 alpha/beta hydrolase fold KQ252_12960 PF00682 HMGL-like KQ252_12960 PF08502 LeuA allosteric (dimerisation) domain KQ252_12965 PF13640 2OG-Fe(II) oxygenase superfamily KQ252_12965 PF18331 PKHD-type hydroxylase C-terminal domain KQ252_12970 PF00593 TonB dependent receptor KQ252_12970 PF07715 TonB-dependent Receptor Plug Domain KQ252_12975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ252_12975 PF05698 Bacterial trigger factor protein (TF) C-terminus KQ252_12975 PF05697 Bacterial trigger factor protein (TF) KQ252_12980 PF00574 Clp protease KQ252_12985 PF06689 ClpX C4-type zinc finger KQ252_12985 PF07724 AAA domain (Cdc48 subfamily) KQ252_12985 PF10431 C-terminal, D2-small domain, of ClpB protein KQ252_13000 PF05681 Fumarate hydratase (Fumerase) KQ252_13000 PF05683 Fumarase C-terminus KQ252_13005 PF07085 DRTGG domain KQ252_13005 PF01515 Phosphate acetyl/butaryl transferase KQ252_13010 PF00871 Acetokinase family KQ252_13015 PF00920 Dehydratase family KQ252_13020 PF01081 KDPG and KHG aldolase KQ252_13025 PF02447 GntP family permease KQ252_13030 PF01202 Shikimate kinase KQ252_13035 PF00171 Aldehyde dehydrogenase family KQ252_13040 PF00171 Aldehyde dehydrogenase family KQ252_13045 PF00561 alpha/beta hydrolase fold KQ252_13055 PF00933 Glycosyl hydrolase family 3 N terminal domain KQ252_13060 PF17804 Tail specific protease N-terminal domain KQ252_13060 PF00595 PDZ domain KQ252_13060 PF03572 Peptidase family S41 KQ252_13060 PF11818 C-terminal domain of tail specific protease (DUF3340) KQ252_13065 PF13439 Glycosyltransferase Family 4 KQ252_13065 PF00534 Glycosyl transferases group 1 KQ252_13070 PF01569 PAP2 superfamily KQ252_13075 PF04384 Iron-sulphur cluster assembly KQ252_13080 PF00334 Nucleoside diphosphate kinase KQ252_13085 PF04055 Radical SAM superfamily KQ252_13095 PF13464 Domain of unknown function (DUF4115) KQ252_13100 PF04551 GcpE protein KQ252_13105 PF13393 Histidyl-tRNA synthetase KQ252_13105 PF03129 Anticodon binding domain KQ252_13115 PF13360 PQQ-like domain KQ252_13120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KQ252_13120 PF01926 50S ribosome-binding GTPase KQ252_13130 PF02556 Preprotein translocase subunit SecB KQ252_13135 PF00462 Glutaredoxin KQ252_13145 PF03193 RsgA GTPase KQ252_13150 PF00929 Exonuclease KQ252_13165 PF02321 Outer membrane efflux protein KQ252_13170 PF12704 MacB-like periplasmic core domain KQ252_13170 PF00005 ABC transporter KQ252_13170 PF02687 FtsX-like permease family KQ252_13175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KQ252_13190 PF00133 tRNA synthetases class I (I, L, M and V) KQ252_13190 PF13603 Leucyl-tRNA synthetase, Domain 2 KQ252_13190 PF09334 tRNA synthetases class I (M) KQ252_13190 PF08264 Anticodon-binding domain of tRNA KQ252_13200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ252_13200 PF00205 Thiamine pyrophosphate enzyme, central domain KQ252_13200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ252_13205 PF10369 Small subunit of acetolactate synthase KQ252_13210 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KQ252_13210 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KQ252_13215 PF03707 Bacterial signalling protein N terminal repeat KQ252_13215 PF00563 EAL domain KQ252_13215 PF00990 Diguanylate cyclase, GGDEF domain KQ252_13235 PF00009 Elongation factor Tu GTP binding domain KQ252_13235 PF03144 Elongation factor Tu domain 2 KQ252_13235 PF16658 Class II release factor RF3, C-terminal domain KQ252_13250 PF01026 TatD related DNase KQ252_13255 PF00330 Aconitase family (aconitate hydratase) KQ252_13255 PF00694 Aconitase C-terminal domain KQ252_13265 PF00899 ThiF family KQ252_13275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_13275 PF03466 LysR substrate binding domain KQ252_13285 PF01207 Dihydrouridine synthase (Dus) KQ252_13290 PF07690 Major Facilitator Superfamily KQ252_13300 PF00892 EamA-like transporter family KQ252_13305 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KQ252_13305 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KQ252_13310 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KQ252_13315 PF02233 NAD(P) transhydrogenase beta subunit KQ252_13320 PF00106 short chain dehydrogenase KQ252_13330 PF01261 Xylose isomerase-like TIM barrel KQ252_13335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KQ252_13335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KQ252_13340 PF00378 Enoyl-CoA hydratase/isomerase KQ252_13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_13345 PF00672 HAMP domain KQ252_13345 PF00072 Response regulator receiver domain KQ252_13345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KQ252_13345 PF00512 His Kinase A (phospho-acceptor) domain KQ252_13345 PF01627 Hpt domain KQ252_13350 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_13360 PF05958 tRNA (Uracil-5-)-methyltransferase KQ252_13365 PF13291 ACT domain KQ252_13365 PF04607 Region found in RelA / SpoT proteins KQ252_13365 PF02824 TGS domain KQ252_13370 PF00106 short chain dehydrogenase KQ252_13375 PF03819 MazG nucleotide pyrophosphohydrolase domain KQ252_13385 PF12627 Probable RNA and SrmB- binding site of polymerase A KQ252_13385 PF01743 Poly A polymerase head domain KQ252_13385 PF12626 Polymerase A arginine-rich C-terminus KQ252_13390 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KQ252_13395 PF02548 Ketopantoate hydroxymethyltransferase KQ252_13400 PF02569 Pantoate-beta-alanine ligase KQ252_13405 PF03668 P-loop ATPase protein family KQ252_13410 PF00381 PTS HPr component phosphorylation site KQ252_13415 PF04751 Protein of unknown function (DUF615) KQ252_13420 PF00501 AMP-binding enzyme KQ252_13420 PF13193 AMP-binding enzyme C-terminal domain KQ252_13425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KQ252_13425 PF02824 TGS domain KQ252_13425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KQ252_13425 PF03129 Anticodon binding domain KQ252_13430 PF00707 Translation initiation factor IF-3, C-terminal domain KQ252_13430 PF05198 Translation initiation factor IF-3, N-terminal domain KQ252_13435 PF00043 Glutathione S-transferase, C-terminal domain KQ252_13435 PF02798 Glutathione S-transferase, N-terminal domain KQ252_13440 PF09335 SNARE associated Golgi protein KQ252_13445 PF07690 Major Facilitator Superfamily KQ252_13450 PF01632 Ribosomal protein L35 KQ252_13455 PF00453 Ribosomal protein L20 KQ252_13475 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KQ252_13475 PF01409 tRNA synthetases class II core domain (F) KQ252_13480 PF03483 B3/4 domain KQ252_13480 PF03484 tRNA synthetase B5 domain KQ252_13480 PF03147 Ferredoxin-fold anticodon binding domain KQ252_13480 PF01588 Putative tRNA binding domain KQ252_13480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KQ252_13485 PF00216 Bacterial DNA-binding protein KQ252_13500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KQ252_13500 PF07498 Rho termination factor, N-terminal domain KQ252_13500 PF07497 Rho termination factor, RNA-binding domain KQ252_13505 PF00085 Thioredoxin KQ252_13510 PF02541 Ppx/GppA phosphatase family KQ252_13515 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KQ252_13520 PF11734 TilS substrate C-terminal domain KQ252_13520 PF09179 TilS substrate binding domain KQ252_13520 PF01171 PP-loop family KQ252_13525 PF03807 NADP oxidoreductase coenzyme F420-dependent KQ252_13525 PF14748 Pyrroline-5-carboxylate reductase dimerisation KQ252_13530 PF02325 YGGT family KQ252_13535 PF01367 5'-3' exonuclease, C-terminal SAM fold KQ252_13535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KQ252_13535 PF00476 DNA polymerase family A KQ252_13535 PF01612 3'-5' exonuclease KQ252_13555 PF00437 Type II/IV secretion system protein KQ252_13560 PF02566 OsmC-like protein KQ252_13565 PF01047 MarR family KQ252_13575 PF00795 Carbon-nitrogen hydrolase KQ252_13620 PF04552 Sigma-54, DNA binding domain KQ252_13620 PF00309 Sigma-54 factor, Activator interacting domain (AID) KQ252_13620 PF04963 Sigma-54 factor, core binding domain KQ252_13625 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KQ252_13630 PF01722 BolA-like protein KQ252_13635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KQ252_13640 PF01634 ATP phosphoribosyltransferase KQ252_13645 PF00815 Histidinol dehydrogenase KQ252_13650 PF00155 Aminotransferase class I and II KQ252_13655 PF04715 Anthranilate synthase component I, N terminal region KQ252_13655 PF00425 chorismate binding enzyme KQ252_13695 PF00293 NUDIX domain KQ252_13700 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_13705 PF00814 Glycoprotease family KQ252_13710 PF04445 Putative SAM-dependent methyltransferase KQ252_13720 PF00756 Putative esterase KQ252_13730 PF00834 Ribulose-phosphate 3 epimerase family KQ252_13745 PF00394 Multicopper oxidase KQ252_13745 PF07731 Multicopper oxidase KQ252_13745 PF07732 Multicopper oxidase KQ252_13750 PF05275 Copper resistance protein B precursor (CopB) KQ252_13760 PF00893 Small Multidrug Resistance protein KQ252_13765 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KQ252_13765 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KQ252_13770 PF01960 ArgJ family KQ252_13775 PF02445 Quinolinate synthetase A protein KQ252_13800 PF00962 Adenosine/AMP deaminase KQ252_13805 PF00107 Zinc-binding dehydrogenase KQ252_13805 PF08240 Alcohol dehydrogenase GroES-like domain KQ252_13810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_13810 PF03466 LysR substrate binding domain KQ252_13815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_13815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_13815 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_13820 PF07690 Major Facilitator Superfamily KQ252_13825 PF02515 CoA-transferase family III KQ252_13835 PF00890 FAD binding domain KQ252_13835 PF14537 Cytochrome c3 KQ252_13840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_13840 PF03466 LysR substrate binding domain KQ252_13855 PF03466 LysR substrate binding domain KQ252_13855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_13890 PF01717 Cobalamin-independent synthase, Catalytic domain KQ252_13890 PF08267 Cobalamin-independent synthase, N-terminal domain KQ252_13895 PF01613 Flavin reductase like domain KQ252_13925 PF17074 Darcynin, domain of unknown function KQ252_13945 PF01011 PQQ enzyme repeat KQ252_13945 PF13360 PQQ-like domain KQ252_13995 PF00145 C-5 cytosine-specific DNA methylase KQ252_14000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_14000 PF13188 PAS domain KQ252_14000 PF13426 PAS domain KQ252_14010 PF00268 Ribonucleotide reductase, small chain KQ252_14020 PF03477 ATP cone domain KQ252_14020 PF00317 Ribonucleotide reductase, all-alpha domain KQ252_14020 PF02867 Ribonucleotide reductase, barrel domain KQ252_14030 PF00072 Response regulator receiver domain KQ252_14030 PF00486 Transcriptional regulatory protein, C terminal KQ252_14035 PF00672 HAMP domain KQ252_14035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_14035 PF00512 His Kinase A (phospho-acceptor) domain KQ252_14045 PF00990 Diguanylate cyclase, GGDEF domain KQ252_14045 PF17151 Periplasmic sensor domain KQ252_14050 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KQ252_14055 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KQ252_14060 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KQ252_14060 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KQ252_14070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KQ252_14070 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KQ252_14070 PF10531 SLBB domain KQ252_14075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KQ252_14075 PF00384 Molybdopterin oxidoreductase KQ252_14075 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KQ252_14080 PF00146 NADH dehydrogenase KQ252_14085 PF12838 4Fe-4S dicluster domain KQ252_14090 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KQ252_14095 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KQ252_14100 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KQ252_14100 PF00361 Proton-conducting membrane transporter KQ252_14105 PF00361 Proton-conducting membrane transporter KQ252_14110 PF00361 Proton-conducting membrane transporter KQ252_14120 PF00313 'Cold-shock' DNA-binding domain KQ252_14130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_14130 PF03466 LysR substrate binding domain KQ252_14135 PF00175 Oxidoreductase NAD-binding domain KQ252_14135 PF00970 Oxidoreductase FAD-binding domain KQ252_14150 PF05552 Conserved TM helix KQ252_14165 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_14170 PF13533 Biotin-lipoyl like KQ252_14195 PF09334 tRNA synthetases class I (M) KQ252_14195 PF01588 Putative tRNA binding domain KQ252_14205 PF10609 NUBPL iron-transfer P-loop NTPase KQ252_14215 PF01048 Phosphorylase superfamily KQ252_14230 PF00692 dUTPase KQ252_14260 PF01207 Dihydrouridine synthase (Dus) KQ252_14270 PF02881 SRP54-type protein, helical bundle domain KQ252_14270 PF02978 Signal peptide binding domain KQ252_14270 PF00448 SRP54-type protein, GTPase domain KQ252_14275 PF03309 Type III pantothenate kinase KQ252_14285 PF01925 Sulfite exporter TauE/SafE KQ252_14295 PF02463 RecF/RecN/SMC N terminal domain KQ252_14295 PF06470 SMC proteins Flexible Hinge Domain KQ252_14305 PF01653 NAD-dependent DNA ligase adenylation domain KQ252_14305 PF03120 NAD-dependent DNA ligase OB-fold domain KQ252_14305 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KQ252_14305 PF12826 Helix-hairpin-helix motif KQ252_14305 PF00533 BRCA1 C Terminus (BRCT) domain KQ252_14310 PF00210 Ferritin-like domain KQ252_14315 PF07690 Major Facilitator Superfamily KQ252_14320 PF00982 Glycosyltransferase family 20 KQ252_14325 PF02358 Trehalose-phosphatase KQ252_14330 PF12697 Alpha/beta hydrolase family KQ252_14330 PF08241 Methyltransferase domain KQ252_14335 PF06968 Biotin and Thiamin Synthesis associated domain KQ252_14335 PF04055 Radical SAM superfamily KQ252_14335 PF00202 Aminotransferase class-III KQ252_14340 PF00155 Aminotransferase class I and II KQ252_14355 PF00849 RNA pseudouridylate synthase KQ252_14355 PF01479 S4 domain KQ252_14360 PF04079 Segregation and condensation complex subunit ScpB KQ252_14365 PF02616 Segregation and condensation protein ScpA KQ252_14370 PF01300 Telomere recombination KQ252_14375 PF04315 Elongation factor P hydroxylase KQ252_14380 PF02620 Large ribosomal RNA subunit accumulation protein YceD KQ252_14385 PF01783 Ribosomal L32p protein family KQ252_14390 PF00698 Acyl transferase domain KQ252_14400 PF00550 Phosphopantetheine attachment site KQ252_14405 PF04972 BON domain KQ252_14405 PF01476 LysM domain KQ252_14410 PF02581 Thiamine monophosphate synthase KQ252_14410 PF03070 TENA/THI-4/PQQC family KQ252_14410 PF08543 Phosphomethylpyrimidine kinase KQ252_14420 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KQ252_14435 PF02261 Aspartate decarboxylase KQ252_14440 PF01195 Peptidyl-tRNA hydrolase KQ252_14445 PF01386 Ribosomal L25p family KQ252_14450 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KQ252_14450 PF14572 Phosphoribosyl synthetase-associated domain KQ252_14475 PF08544 GHMP kinases C terminal KQ252_14475 PF00288 GHMP kinases N terminal domain KQ252_14480 PF03550 Outer membrane lipoprotein LolB KQ252_14490 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KQ252_14490 PF01488 Shikimate / quinate 5-dehydrogenase KQ252_14490 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KQ252_14495 PF01807 CHC2 zinc finger KQ252_14495 PF08278 DNA primase DnaG DnaB-binding KQ252_14495 PF10410 DnaB-helicase binding domain of primase KQ252_14495 PF08275 DNA primase catalytic core, N-terminal domain KQ252_14500 PF13525 Outer membrane lipoprotein KQ252_14505 PF01479 S4 domain KQ252_14505 PF00849 RNA pseudouridylate synthase KQ252_14510 PF02578 Multi-copper polyphenol oxidoreductase laccase KQ252_14515 PF03358 NADPH-dependent FMN reductase KQ252_14520 PF01668 SmpB protein KQ252_14525 PF01467 Cytidylyltransferase-like KQ252_14530 PF00037 4Fe-4S binding domain KQ252_14550 PF03466 LysR substrate binding domain KQ252_14550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_14555 PF00180 Isocitrate/isopropylmalate dehydrogenase KQ252_14560 PF02028 BCCT, betaine/carnitine/choline family transporter KQ252_14565 PF07859 alpha/beta hydrolase fold KQ252_14570 PF00355 Rieske [2Fe-2S] domain KQ252_14570 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ252_14575 PF00171 Aldehyde dehydrogenase family KQ252_14580 PF00175 Oxidoreductase NAD-binding domain KQ252_14580 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_14580 PF00970 Oxidoreductase FAD-binding domain KQ252_14595 PF00795 Carbon-nitrogen hydrolase KQ252_14595 PF02540 NAD synthase KQ252_14605 PF05726 Pirin C-terminal cupin domain KQ252_14605 PF02678 Pirin KQ252_14610 PF03653 Uncharacterised protein family (UPF0093) KQ252_14615 PF02801 Beta-ketoacyl synthase, C-terminal domain KQ252_14615 PF00109 Beta-ketoacyl synthase, N-terminal domain KQ252_14625 PF00164 Ribosomal protein S12/S23 KQ252_14630 PF00177 Ribosomal protein S7p/S5e KQ252_14635 PF00679 Elongation factor G C-terminus KQ252_14635 PF14492 Elongation Factor G, domain II KQ252_14635 PF03764 Elongation factor G, domain IV KQ252_14635 PF00009 Elongation factor Tu GTP binding domain KQ252_14635 PF03144 Elongation factor Tu domain 2 KQ252_14640 PF03144 Elongation factor Tu domain 2 KQ252_14640 PF03143 Elongation factor Tu C-terminal domain KQ252_14640 PF00009 Elongation factor Tu GTP binding domain KQ252_14655 PF00583 Acetyltransferase (GNAT) family KQ252_14660 PF04376 Arginine-tRNA-protein transferase, N terminus KQ252_14660 PF04377 Arginine-tRNA-protein transferase, C terminus KQ252_14665 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KQ252_14670 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_14675 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KQ252_14675 PF17854 FtsK alpha domain KQ252_14675 PF09397 Ftsk gamma domain KQ252_14675 PF01580 FtsK/SpoIIIE family KQ252_14680 PF01810 LysE type translocator KQ252_14690 PF03776 Septum formation topological specificity factor MinE KQ252_14695 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KQ252_14700 PF03775 Septum formation inhibitor MinC, C-terminal domain KQ252_14710 PF01553 Acyltransferase KQ252_14715 PF00691 OmpA family KQ252_14715 PF13488 Glycine zipper KQ252_14720 PF00580 UvrD/REP helicase N-terminal domain KQ252_14720 PF13361 UvrD-like helicase C-terminal domain KQ252_14725 PF00692 dUTPase KQ252_14730 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KQ252_14730 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KQ252_14730 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KQ252_14730 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KQ252_14735 PF00696 Amino acid kinase family KQ252_14745 PF13230 Glutamine amidotransferases class-II KQ252_14750 PF01814 Hemerythrin HHE cation binding domain KQ252_14760 PF03658 RnfH family Ubiquitin KQ252_14765 PF04355 SmpA / OmlA family KQ252_14770 PF01475 Ferric uptake regulator family KQ252_14775 PF00437 Type II/IV secretion system protein KQ252_14780 PF00437 Type II/IV secretion system protein KQ252_14785 PF01168 Alanine racemase, N-terminal domain KQ252_14795 PF00149 Calcineurin-like phosphoesterase KQ252_14795 PF12320 Type 5 capsule protein repressor C-terminal domain KQ252_14815 PF08338 Domain of unknown function (DUF1731) KQ252_14815 PF01370 NAD dependent epimerase/dehydratase family KQ252_14820 PF01266 FAD dependent oxidoreductase KQ252_14825 PF00490 Delta-aminolevulinic acid dehydratase KQ252_14830 PF03061 Thioesterase superfamily KQ252_14835 PF13533 Biotin-lipoyl like KQ252_14840 PF07690 Major Facilitator Superfamily KQ252_14855 PF13356 Arm DNA-binding domain KQ252_14855 PF00589 Phage integrase family KQ252_14930 PF13737 Transposase DDE domain KQ252_14970 PF00083 Sugar (and other) transporter KQ252_14975 PF00701 Dihydrodipicolinate synthetase family KQ252_14985 PF04542 Sigma-70 region 2 KQ252_14985 PF08281 Sigma-70, region 4 KQ252_14995 PF07715 TonB-dependent Receptor Plug Domain KQ252_14995 PF00593 TonB dependent receptor KQ252_15005 PF04575 Protein of unknown function (DUF560) KQ252_15015 PF01126 Heme oxygenase KQ252_15040 PF13520 Amino acid permease KQ252_15045 PF02574 Homocysteine S-methyltransferase KQ252_15055 PF06039 Malate:quinone oxidoreductase (Mqo) KQ252_15060 PF05199 GMC oxidoreductase KQ252_15060 PF00732 GMC oxidoreductase KQ252_15065 PF00171 Aldehyde dehydrogenase family KQ252_15070 PF00440 Bacterial regulatory proteins, tetR family KQ252_15070 PF13977 BetI-type transcriptional repressor, C-terminal KQ252_15075 PF02028 BCCT, betaine/carnitine/choline family transporter KQ252_15080 PF02028 BCCT, betaine/carnitine/choline family transporter KQ252_15090 PF03061 Thioesterase superfamily KQ252_15100 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ252_15100 PF07683 Cobalamin synthesis protein cobW C-terminal domain KQ252_15105 PF00375 Sodium:dicarboxylate symporter family KQ252_15110 PF07152 YaeQ protein KQ252_15115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KQ252_15120 PF01522 Polysaccharide deacetylase KQ252_15120 PF14883 Hypothetical glycosyl hydrolase family 13 KQ252_15125 PF00535 Glycosyl transferase family 2 KQ252_15135 PF00378 Enoyl-CoA hydratase/isomerase KQ252_15150 PF01614 Bacterial transcriptional regulator KQ252_15150 PF09339 IclR helix-turn-helix domain KQ252_15155 PF00355 Rieske [2Fe-2S] domain KQ252_15165 PF00355 Rieske [2Fe-2S] domain KQ252_15175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KQ252_15180 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_15180 PF14759 Reductase C-terminal KQ252_15185 PF07690 Major Facilitator Superfamily KQ252_15195 PF12697 Alpha/beta hydrolase family KQ252_15205 PF01958 Domain of unknown function DUF108 KQ252_15205 PF03447 Homoserine dehydrogenase, NAD binding domain KQ252_15210 PF00171 Aldehyde dehydrogenase family KQ252_15215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KQ252_15215 PF00205 Thiamine pyrophosphate enzyme, central domain KQ252_15215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KQ252_15225 PF07690 Major Facilitator Superfamily KQ252_15230 PF01327 Polypeptide deformylase KQ252_15235 PF04960 Glutaminase KQ252_15240 PF12833 Helix-turn-helix domain KQ252_15240 PF02311 AraC-like ligand binding domain KQ252_15245 PF07690 Major Facilitator Superfamily KQ252_15250 PF01263 Aldose 1-epimerase KQ252_15260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_15260 PF03466 LysR substrate binding domain KQ252_15270 PF07690 Major Facilitator Superfamily KQ252_15275 PF00456 Transketolase, thiamine diphosphate binding domain KQ252_15280 PF02779 Transketolase, pyrimidine binding domain KQ252_15280 PF02780 Transketolase, C-terminal domain KQ252_15285 PF02574 Homocysteine S-methyltransferase KQ252_15285 PF00809 Pterin binding enzyme KQ252_15285 PF02965 Vitamin B12 dependent methionine synthase, activation domain KQ252_15285 PF02310 B12 binding domain KQ252_15285 PF02607 B12 binding domain KQ252_15290 PF01384 Phosphate transporter family KQ252_15295 PF00291 Pyridoxal-phosphate dependent enzyme KQ252_15310 PF03781 Sulfatase-modifying factor enzyme 1 KQ252_15315 PF00884 Sulfatase KQ252_15325 PF01521 Iron-sulphur cluster biosynthesis KQ252_15325 PF01106 NifU-like domain KQ252_15330 PF07715 TonB-dependent Receptor Plug Domain KQ252_15330 PF00593 TonB dependent receptor KQ252_15340 PF00561 alpha/beta hydrolase fold KQ252_15345 PF00484 Carbonic anhydrase KQ252_15350 PF13472 GDSL-like Lipase/Acylhydrolase family KQ252_15355 PF00005 ABC transporter KQ252_15365 PF01694 Rhomboid family KQ252_15370 PF00912 Transglycosylase KQ252_15375 PF13089 Polyphosphate kinase N-terminal domain KQ252_15375 PF02503 Polyphosphate kinase middle domain KQ252_15375 PF17941 Polyphosphate kinase C-terminal domain 1 KQ252_15375 PF13090 Polyphosphate kinase C-terminal domain 2 KQ252_15390 PF03466 LysR substrate binding domain KQ252_15390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_15395 PF00561 alpha/beta hydrolase fold KQ252_15400 PF18113 Rubredoxin binding C-terminal domain KQ252_15400 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_15405 PF00301 Rubredoxin KQ252_15420 PF01336 OB-fold nucleic acid binding domain KQ252_15420 PF00152 tRNA synthetases class II (D, K and N) KQ252_15425 PF14052 Capsule assembly protein Wzi KQ252_15435 PF01507 Phosphoadenosine phosphosulfate reductase family KQ252_15440 PF00009 Elongation factor Tu GTP binding domain KQ252_15460 PF01595 Cyclin M transmembrane N-terminal domain KQ252_15460 PF03471 Transporter associated domain KQ252_15460 PF00571 CBS domain KQ252_15465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_15465 PF03466 LysR substrate binding domain KQ252_15470 PF00463 Isocitrate lyase family KQ252_15485 PF01774 UreD urease accessory protein KQ252_15490 PF00547 Urease, gamma subunit KQ252_15495 PF00699 Urease beta subunit KQ252_15500 PF01979 Amidohydrolase family KQ252_15500 PF00449 Urease alpha-subunit, N-terminal domain KQ252_15505 PF05194 UreE urease accessory protein, C-terminal domain KQ252_15505 PF02814 UreE urease accessory protein, N-terminal domain KQ252_15510 PF01730 UreF KQ252_15515 PF02492 CobW/HypB/UreG, nucleotide-binding domain KQ252_15530 PF00905 Penicillin binding protein transpeptidase domain KQ252_15530 PF03717 Penicillin-binding Protein dimerisation domain KQ252_15545 PF05191 Adenylate kinase, active site lid KQ252_15555 PF10576 Iron-sulfur binding domain of endonuclease III KQ252_15555 PF00633 Helix-hairpin-helix motif KQ252_15555 PF00730 HhH-GPD superfamily base excision DNA repair protein KQ252_15560 PF04060 Putative Fe-S cluster KQ252_15565 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KQ252_15565 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KQ252_15575 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KQ252_15580 PF02590 Predicted SPOUT methyltransferase KQ252_15585 PF00004 ATPase family associated with various cellular activities (AAA) KQ252_15585 PF05362 Lon protease (S16) C-terminal proteolytic domain KQ252_15585 PF02190 ATP-dependent protease La (LON) substrate-binding domain KQ252_15590 PF13018 Extended Signal Peptide of Type V secretion system KQ252_15590 PF03895 YadA-like membrane anchor domain KQ252_15590 PF05658 Head domain of trimeric autotransporter adhesin KQ252_15590 PF05662 Coiled stalk of trimeric autotransporter adhesin KQ252_15595 PF00691 OmpA family KQ252_15595 PF04355 SmpA / OmlA family KQ252_15600 PF01812 5-formyltetrahydrofolate cyclo-ligase family KQ252_15705 PF00772 DnaB-like helicase N terminal domain KQ252_15705 PF03796 DnaB-like helicase C terminal domain KQ252_15930 PF01551 Peptidase family M23 KQ252_15930 PF01476 LysM domain KQ252_15930 PF08525 Opacity-associated protein A N-terminal motif KQ252_15975 PF00182 Chitinase class I KQ252_15990 PF10548 P22AR C-terminal domain KQ252_15990 PF02498 BRO family, N-terminal domain KQ252_16035 PF05195 Aminopeptidase P, N-terminal domain KQ252_16035 PF00557 Metallopeptidase family M24 KQ252_16040 PF01494 FAD binding domain KQ252_16045 PF01494 FAD binding domain KQ252_16055 PF13411 MerR HTH family regulatory protein KQ252_16065 PF01810 LysE type translocator KQ252_16070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_16070 PF03466 LysR substrate binding domain KQ252_16080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KQ252_16085 PF02021 Uncharacterised protein family UPF0102 KQ252_16090 PF04972 BON domain KQ252_16100 PF00293 NUDIX domain KQ252_16100 PF09297 NADH pyrophosphatase zinc ribbon domain KQ252_16110 PF00929 Exonuclease KQ252_16115 PF01476 LysM domain KQ252_16115 PF01464 Transglycosylase SLT domain KQ252_16115 PF01476 LysM domain KQ252_16115 PF01464 Transglycosylase SLT domain KQ252_16120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KQ252_16125 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_16130 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_16130 PF12911 N-terminal TM domain of oligopeptide transport permease C KQ252_16135 PF00005 ABC transporter KQ252_16135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KQ252_16140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ252_16140 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_16145 PF00593 TonB dependent receptor KQ252_16145 PF07715 TonB-dependent Receptor Plug Domain KQ252_16155 PF00929 Exonuclease KQ252_16160 PF01979 Amidohydrolase family KQ252_16165 PF00563 EAL domain KQ252_16165 PF01590 GAF domain KQ252_16165 PF00990 Diguanylate cyclase, GGDEF domain KQ252_16165 PF00360 Phytochrome region KQ252_16170 PF00764 Arginosuccinate synthase KQ252_16175 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_16175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KQ252_16190 PF05987 Bacterial protein of unknown function (DUF898) KQ252_16195 PF03180 NLPA lipoprotein KQ252_16205 PF13737 Transposase DDE domain KQ252_16215 PF03527 RHS protein KQ252_16215 PF05593 RHS Repeat KQ252_16265 PF03783 Curli production assembly/transport component CsgG KQ252_16275 PF05643 Putative bacterial lipoprotein (DUF799) KQ252_16285 PF00324 Amino acid permease KQ252_16290 PF01266 FAD dependent oxidoreductase KQ252_16295 PF00324 Amino acid permease KQ252_16305 PF07729 FCD domain KQ252_16305 PF00392 Bacterial regulatory proteins, gntR family KQ252_16315 PF00171 Aldehyde dehydrogenase family KQ252_16325 PF00202 Aminotransferase class-III KQ252_16330 PF04958 Arginine N-succinyltransferase beta subunit KQ252_16335 PF00324 Amino acid permease KQ252_16340 PF00171 Aldehyde dehydrogenase family KQ252_16345 PF12833 Helix-turn-helix domain KQ252_16345 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KQ252_16355 PF00892 EamA-like transporter family KQ252_16360 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus KQ252_16360 PF08666 SAF domain KQ252_16365 PF07690 Major Facilitator Superfamily KQ252_16370 PF13378 Enolase C-terminal domain-like KQ252_16375 PF00701 Dihydrodipicolinate synthetase family KQ252_16380 PF00171 Aldehyde dehydrogenase family KQ252_16385 PF07729 FCD domain KQ252_16385 PF00392 Bacterial regulatory proteins, gntR family KQ252_16390 PF07519 Tannase and feruloyl esterase KQ252_16405 PF03573 outer membrane porin, OprD family KQ252_16410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_16410 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_16410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_16420 PF00171 Aldehyde dehydrogenase family KQ252_16425 PF00378 Enoyl-CoA hydratase/isomerase KQ252_16430 PF07690 Major Facilitator Superfamily KQ252_16445 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_16445 PF00175 Oxidoreductase NAD-binding domain KQ252_16450 PF00355 Rieske [2Fe-2S] domain KQ252_16455 PF07690 Major Facilitator Superfamily KQ252_16460 PF03573 outer membrane porin, OprD family KQ252_16465 PF05199 GMC oxidoreductase KQ252_16470 PF07859 alpha/beta hydrolase fold KQ252_16480 PF00743 Flavin-binding monooxygenase-like KQ252_16485 PF12833 Helix-turn-helix domain KQ252_16490 PF04072 Leucine carboxyl methyltransferase KQ252_16495 PF00743 Flavin-binding monooxygenase-like KQ252_16500 PF00106 short chain dehydrogenase KQ252_16510 PF00440 Bacterial regulatory proteins, tetR family KQ252_16510 PF17932 Tetracyclin repressor-like, C-terminal domain KQ252_16515 PF02678 Pirin KQ252_16515 PF17954 Quercetinase C-terminal cupin domain KQ252_16525 PF00106 short chain dehydrogenase KQ252_16530 PF00743 Flavin-binding monooxygenase-like KQ252_16540 PF00860 Permease family KQ252_16545 PF00962 Adenosine/AMP deaminase KQ252_16550 PF01292 Prokaryotic cytochrome b561 KQ252_16560 PF01351 Ribonuclease HII KQ252_16565 PF02599 Global regulator protein family KQ252_16570 PF00696 Amino acid kinase family KQ252_16570 PF01842 ACT domain KQ252_16570 PF13840 ACT domain KQ252_16575 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KQ252_16575 PF02272 DHHA1 domain KQ252_16575 PF01411 tRNA synthetases class II (A) KQ252_16580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KQ252_16580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KQ252_16590 PF13393 Histidyl-tRNA synthetase KQ252_16595 PF00709 Adenylosuccinate synthetase KQ252_16610 PF00248 Aldo/keto reductase family KQ252_16615 PF13545 Crp-like helix-turn-helix domain KQ252_16615 PF00027 Cyclic nucleotide-binding domain KQ252_16625 PF02566 OsmC-like protein KQ252_16640 PF00004 ATPase family associated with various cellular activities (AAA) KQ252_16640 PF07724 AAA domain (Cdc48 subfamily) KQ252_16640 PF17871 AAA lid domain KQ252_16640 PF02861 Clp amino terminal domain, pathogenicity island component KQ252_16640 PF10431 C-terminal, D2-small domain, of ClpB protein KQ252_16655 PF01170 Putative RNA methylase family UPF0020 KQ252_16655 PF02926 THUMP domain KQ252_16655 PF10672 S-adenosylmethionine-dependent methyltransferase KQ252_16665 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KQ252_16665 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KQ252_16670 PF01979 Amidohydrolase family KQ252_16675 PF00691 OmpA family KQ252_16675 PF13488 Glycine zipper KQ252_16685 PF00043 Glutathione S-transferase, C-terminal domain KQ252_16685 PF13417 Glutathione S-transferase, N-terminal domain KQ252_16690 PF02390 Putative methyltransferase KQ252_16700 PF00043 Glutathione S-transferase, C-terminal domain KQ252_16700 PF02798 Glutathione S-transferase, N-terminal domain KQ252_16710 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_16710 PF13192 Thioredoxin domain KQ252_16730 PF10417 C-terminal domain of 1-Cys peroxiredoxin KQ252_16730 PF00578 AhpC/TSA family KQ252_16735 PF00270 DEAD/DEAH box helicase KQ252_16735 PF11898 Domain of unknown function (DUF3418) KQ252_16735 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KQ252_16735 PF00271 Helicase conserved C-terminal domain KQ252_16735 PF04408 Helicase associated domain (HA2) KQ252_16740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KQ252_16740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KQ252_16750 PF07690 Major Facilitator Superfamily KQ252_16755 PF03594 Benzoate membrane transport protein KQ252_16760 PF00106 short chain dehydrogenase KQ252_16765 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_16765 PF00175 Oxidoreductase NAD-binding domain KQ252_16765 PF00970 Oxidoreductase FAD-binding domain KQ252_16770 PF00866 Ring hydroxylating beta subunit KQ252_16775 PF00355 Rieske [2Fe-2S] domain KQ252_16775 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KQ252_16780 PF03466 LysR substrate binding domain KQ252_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_16790 PF00403 Heavy-metal-associated domain KQ252_16795 PF00376 MerR family regulatory protein KQ252_16795 PF09278 MerR, DNA binding KQ252_16830 PF02601 Exonuclease VII, large subunit KQ252_16830 PF13742 OB-fold nucleic acid binding domain KQ252_16860 PF01810 LysE type translocator KQ252_16865 PF00313 'Cold-shock' DNA-binding domain KQ252_16875 PF14748 Pyrroline-5-carboxylate reductase dimerisation KQ252_16875 PF03807 NADP oxidoreductase coenzyme F420-dependent KQ252_16900 PF07690 Major Facilitator Superfamily KQ252_16905 PF01638 HxlR-like helix-turn-helix KQ252_16960 PF01406 tRNA synthetases class I (C) catalytic domain KQ252_16960 PF09190 DALR domain KQ252_16965 PF01380 SIS domain KQ252_16965 PF00571 CBS domain KQ252_16980 PF03968 OstA-like protein KQ252_16985 PF00005 ABC transporter KQ252_16985 PF12399 Branched-chain amino acid ATP-binding cassette transporter KQ252_16990 PF02321 Outer membrane efflux protein KQ252_16995 PF00664 ABC transporter transmembrane region KQ252_16995 PF00005 ABC transporter KQ252_16995 PF03412 Peptidase C39 family KQ252_17005 PF01205 Uncharacterized protein family UPF0029 KQ252_17010 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_17020 PF01596 O-methyltransferase KQ252_17030 PF11953 Domain of unknown function (DUF3470) KQ252_17030 PF00037 4Fe-4S binding domain KQ252_17040 PF00488 MutS domain V KQ252_17040 PF01624 MutS domain I KQ252_17040 PF05188 MutS domain II KQ252_17040 PF05192 MutS domain III KQ252_17040 PF05190 MutS family domain IV KQ252_17045 PF01037 Lrp/AsnC ligand binding domain KQ252_17050 PF00892 EamA-like transporter family KQ252_17055 PF03707 Bacterial signalling protein N terminal repeat KQ252_17055 PF00563 EAL domain KQ252_17055 PF00990 Diguanylate cyclase, GGDEF domain KQ252_17060 PF03279 Bacterial lipid A biosynthesis acyltransferase KQ252_17075 PF13936 Helix-turn-helix domain KQ252_17075 PF00665 Integrase core domain KQ252_17105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ252_17105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ252_17130 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KQ252_17130 PF04717 Type VI secretion system, phage-baseplate injector KQ252_17130 PF13296 Putative type VI secretion system Rhs element Vgr KQ252_17145 PF00665 Integrase core domain KQ252_17145 PF13936 Helix-turn-helix domain KQ252_17155 PF13737 Transposase DDE domain KQ252_17165 PF03527 RHS protein KQ252_17165 PF05593 RHS Repeat KQ252_17190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_17190 PF03466 LysR substrate binding domain KQ252_17195 PF01566 Natural resistance-associated macrophage protein KQ252_17200 PF03746 LamB/YcsF family KQ252_17205 PF07286 Protein of unknown function (DUF1445) KQ252_17215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ252_17215 PF00364 Biotin-requiring enzyme KQ252_17215 PF00289 Biotin carboxylase, N-terminal domain KQ252_17215 PF02785 Biotin carboxylase C-terminal domain KQ252_17220 PF00654 Voltage gated chloride channel KQ252_17230 PF00440 Bacterial regulatory proteins, tetR family KQ252_17240 PF13823 Alcohol dehydrogenase GroES-associated KQ252_17240 PF00107 Zinc-binding dehydrogenase KQ252_17240 PF08240 Alcohol dehydrogenase GroES-like domain KQ252_17255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ252_17255 PF02785 Biotin carboxylase C-terminal domain KQ252_17255 PF00289 Biotin carboxylase, N-terminal domain KQ252_17260 PF02525 Flavodoxin-like fold KQ252_17265 PF01638 HxlR-like helix-turn-helix KQ252_17280 PF08753 NikR C terminal nickel binding domain KQ252_17280 PF01402 Ribbon-helix-helix protein, copG family KQ252_17285 PF01425 Amidase KQ252_17290 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ252_17295 PF00005 ABC transporter KQ252_17320 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KQ252_17335 PF05947 Type VI secretion system, TssF KQ252_17350 PF14331 ImcF-related N-terminal domain KQ252_17350 PF06744 Type VI secretion protein IcmF C-terminal KQ252_17350 PF06761 Intracellular multiplication and human macrophage-killing KQ252_17360 PF00691 OmpA family KQ252_17360 PF01389 OmpA-like transmembrane domain KQ252_17370 PF07724 AAA domain (Cdc48 subfamily) KQ252_17370 PF17871 AAA lid domain KQ252_17370 PF00004 ATPase family associated with various cellular activities (AAA) KQ252_17370 PF10431 C-terminal, D2-small domain, of ClpB protein KQ252_17375 PF06812 ImpA, N-terminal, type VI secretion system KQ252_17380 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KQ252_17400 PF03466 LysR substrate binding domain KQ252_17400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_17410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KQ252_17415 PF07690 Major Facilitator Superfamily KQ252_17430 PF02677 Epoxyqueuosine reductase QueH KQ252_17440 PF00376 MerR family regulatory protein KQ252_17440 PF09278 MerR, DNA binding KQ252_17450 PF00701 Dihydrodipicolinate synthetase family KQ252_17460 PF00392 Bacterial regulatory proteins, gntR family KQ252_17465 PF05544 Proline racemase KQ252_17470 PF01266 FAD dependent oxidoreductase KQ252_17480 PF04324 BFD-like [2Fe-2S] binding domain KQ252_17480 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_17490 PF00083 Sugar (and other) transporter KQ252_17495 PF00171 Aldehyde dehydrogenase family KQ252_17500 PF13520 Amino acid permease KQ252_17505 PF03313 Serine dehydratase alpha chain KQ252_17505 PF03315 Serine dehydratase beta chain KQ252_17510 PF01575 MaoC like domain KQ252_17510 PF00171 Aldehyde dehydrogenase family KQ252_17515 PF05138 Phenylacetic acid catabolic protein KQ252_17520 PF06243 Phenylacetic acid degradation B KQ252_17525 PF05138 Phenylacetic acid catabolic protein KQ252_17530 PF01883 Iron-sulfur cluster assembly protein KQ252_17535 PF00970 Oxidoreductase FAD-binding domain KQ252_17535 PF00111 2Fe-2S iron-sulfur cluster binding domain KQ252_17535 PF00175 Oxidoreductase NAD-binding domain KQ252_17540 PF00378 Enoyl-CoA hydratase/isomerase KQ252_17545 PF00378 Enoyl-CoA hydratase/isomerase KQ252_17550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ252_17550 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KQ252_17550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ252_17555 PF00108 Thiolase, N-terminal domain KQ252_17555 PF02803 Thiolase, C-terminal domain KQ252_17560 PF14535 AMP-binding enzyme C-terminal domain KQ252_17560 PF00501 AMP-binding enzyme KQ252_17565 PF07848 PaaX-like protein KQ252_17565 PF08223 PaaX-like protein C-terminal domain KQ252_17570 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_17575 PF03061 Thioesterase superfamily KQ252_17580 PF13737 Transposase DDE domain KQ252_17585 PF00300 Histidine phosphatase superfamily (branch 1) KQ252_17615 PF00199 Catalase KQ252_17620 PF01292 Prokaryotic cytochrome b561 KQ252_17640 PF12697 Alpha/beta hydrolase family KQ252_17645 PF01613 Flavin reductase like domain KQ252_17650 PF00296 Luciferase-like monooxygenase KQ252_17655 PF00171 Aldehyde dehydrogenase family KQ252_17665 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ252_17675 PF00171 Aldehyde dehydrogenase family KQ252_17680 PF02627 Carboxymuconolactone decarboxylase family KQ252_17685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_17685 PF03466 LysR substrate binding domain KQ252_17690 PF02525 Flavodoxin-like fold KQ252_17695 PF09339 IclR helix-turn-helix domain KQ252_17695 PF01614 Bacterial transcriptional regulator KQ252_17700 PF01494 FAD binding domain KQ252_17705 PF00392 Bacterial regulatory proteins, gntR family KQ252_17705 PF07702 UTRA domain KQ252_17715 PF08402 TOBE domain KQ252_17715 PF00005 ABC transporter KQ252_17720 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_17725 PF01266 FAD dependent oxidoreductase KQ252_17730 PF00266 Aminotransferase class-V KQ252_17735 PF13419 Haloacid dehalogenase-like hydrolase KQ252_17740 PF07690 Major Facilitator Superfamily KQ252_17745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_17745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_17745 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_17750 PF02515 CoA-transferase family III KQ252_17755 PF09339 IclR helix-turn-helix domain KQ252_17760 PF00378 Enoyl-CoA hydratase/isomerase KQ252_17765 PF03060 Nitronate monooxygenase KQ252_17775 PF16861 Carbamoyltransferase C-terminus KQ252_17775 PF02543 Carbamoyltransferase N-terminus KQ252_17780 PF01810 LysE type translocator KQ252_17790 PF09339 IclR helix-turn-helix domain KQ252_17795 PF00108 Thiolase, N-terminal domain KQ252_17795 PF02803 Thiolase, C-terminal domain KQ252_17800 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KQ252_17800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KQ252_17800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KQ252_17810 PF00378 Enoyl-CoA hydratase/isomerase KQ252_17815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_17815 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_17815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_17820 PF07690 Major Facilitator Superfamily KQ252_17825 PF01144 Coenzyme A transferase KQ252_17830 PF01144 Coenzyme A transferase KQ252_17840 PF07690 Major Facilitator Superfamily KQ252_17850 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_17850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_17850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_17850 PF12806 Acetyl-CoA dehydrogenase C-terminal like KQ252_17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_17865 PF03466 LysR substrate binding domain KQ252_17870 PF00682 HMGL-like KQ252_17875 PF02785 Biotin carboxylase C-terminal domain KQ252_17875 PF00289 Biotin carboxylase, N-terminal domain KQ252_17875 PF00364 Biotin-requiring enzyme KQ252_17875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KQ252_17875 PF18140 Propionyl-coenzyme A carboxylase BT domain KQ252_17880 PF00378 Enoyl-CoA hydratase/isomerase KQ252_17885 PF01039 Carboxyl transferase domain KQ252_17890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KQ252_17890 PF02770 Acyl-CoA dehydrogenase, middle domain KQ252_17890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KQ252_17895 PF00440 Bacterial regulatory proteins, tetR family KQ252_17900 PF13193 AMP-binding enzyme C-terminal domain KQ252_17900 PF00501 AMP-binding enzyme KQ252_17920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_17920 PF03466 LysR substrate binding domain KQ252_17955 PF00994 Probable molybdopterin binding domain KQ252_17955 PF18146 Damage-inducible protein CinA KH domain KQ252_17955 PF02464 Competence-damaged protein KQ252_17965 PF18011 C-terminal domain found in long catalases KQ252_17965 PF06628 Catalase-related immune-responsive KQ252_17965 PF00199 Catalase KQ252_17990 PF00717 Peptidase S24-like KQ252_18000 PF01037 Lrp/AsnC ligand binding domain KQ252_18000 PF13404 AsnC-type helix-turn-helix domain KQ252_18010 PF00512 His Kinase A (phospho-acceptor) domain KQ252_18010 PF09308 LuxQ, periplasmic KQ252_18010 PF00072 Response regulator receiver domain KQ252_18010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KQ252_18015 PF00072 Response regulator receiver domain KQ252_18030 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_18035 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_18040 PF00005 ABC transporter KQ252_18045 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ252_18050 PF00497 Bacterial extracellular solute-binding proteins, family 3 KQ252_18060 PF03466 LysR substrate binding domain KQ252_18060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_18065 PF01810 LysE type translocator KQ252_18070 PF00266 Aminotransferase class-V KQ252_18080 PF13737 Transposase DDE domain KQ252_18085 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_18090 PF00581 Rhodanese-like domain KQ252_18100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_18100 PF03466 LysR substrate binding domain KQ252_18105 PF02798 Glutathione S-transferase, N-terminal domain KQ252_18110 PF14834 Glutathione S-transferase, C-terminal domain KQ252_18110 PF02798 Glutathione S-transferase, N-terminal domain KQ252_18115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_18115 PF03466 LysR substrate binding domain KQ252_18120 PF03788 LrgA family KQ252_18125 PF04172 LrgB-like family KQ252_18130 PF00392 Bacterial regulatory proteins, gntR family KQ252_18130 PF00155 Aminotransferase class I and II KQ252_18145 PF07690 Major Facilitator Superfamily KQ252_18155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_18155 PF03466 LysR substrate binding domain KQ252_18160 PF16957 Malonate decarboxylase, alpha subunit, transporter KQ252_18165 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KQ252_18170 PF06857 Malonate decarboxylase delta subunit (MdcD) KQ252_18175 PF01039 Carboxyl transferase domain KQ252_18185 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KQ252_18190 PF00698 Acyl transferase domain KQ252_18205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_18205 PF03466 LysR substrate binding domain KQ252_18210 PF00392 Bacterial regulatory proteins, gntR family KQ252_18210 PF00155 Aminotransferase class I and II KQ252_18220 PF02322 Cytochrome bd terminal oxidase subunit II KQ252_18225 PF01654 Cytochrome bd terminal oxidase subunit I KQ252_18240 PF00296 Luciferase-like monooxygenase KQ252_18245 PF00083 Sugar (and other) transporter KQ252_18255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KQ252_18260 PF00005 ABC transporter KQ252_18265 PF00528 Binding-protein-dependent transport system inner membrane component KQ252_18270 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KQ252_18275 PF01177 Asp/Glu/Hydantoin racemase KQ252_18280 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KQ252_18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_18290 PF03466 LysR substrate binding domain KQ252_18300 PF13382 Adenine deaminase C-terminal domain KQ252_18300 PF01979 Amidohydrolase family KQ252_18310 PF03960 ArsC family KQ252_18315 PF01022 Bacterial regulatory protein, arsR family KQ252_18320 PF01758 Sodium Bile acid symporter family KQ252_18325 PF03466 LysR substrate binding domain KQ252_18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KQ252_18340 PF07992 Pyridine nucleotide-disulphide oxidoreductase KQ252_18340 PF13192 Thioredoxin domain KQ252_18355 PF00132 Bacterial transferase hexapeptide (six repeats) KQ252_18360 PF00588 SpoU rRNA Methylase family KQ252_18365 PF01336 OB-fold nucleic acid binding domain KQ252_18365 PF02811 PHP domain KQ252_18365 PF14579 Helix-hairpin-helix motif KQ252_18365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KQ252_18365 PF07733 Bacterial DNA polymerase III alpha NTPase domain KQ252_18370 PF17763 Glutaminase/Asparaginase C-terminal domain KQ252_18370 PF00710 Asparaginase, N-terminal KQ252_18375 PF00665 Integrase core domain KQ252_18375 PF13936 Helix-turn-helix domain KQ252_18430 PF00565 Staphylococcal nuclease homologue KQ252_18440 PF00816 H-NS histone family KQ252_18485 PF02899 Phage integrase, N-terminal SAM-like domain KQ252_18485 PF00589 Phage integrase family KQ252_18490 PF13610 DDE domain KQ252_18515 PF00962 Adenosine/AMP deaminase KQ252_18525 PF03050 Transposase IS66 family KQ252_18525 PF13817 IS66 C-terminal element KQ252_18525 PF13007 Transposase C of IS166 homeodomain KQ252_18525 PF13005 zinc-finger binding domain of transposase IS66 KQ252_18570 PF13614 AAA domain KQ252_18575 PF02195 ParB-like nuclease domain KQ252_18575 PF17762 HTH domain found in ParB protein KQ252_18590 PF05816 Toxic anion resistance protein (TelA) KQ252_18610 PF00905 Penicillin binding protein transpeptidase domain KQ252_18620 PF13737 Transposase DDE domain KQ252_18680 PF00226 DnaJ domain KQ252_18680 PF01556 DnaJ C terminal domain KQ252_18680 PF00684 DnaJ central domain KQ252_18715 PF18272 single-stranded DNA binding TraI N-terminal subdomain KQ252_18715 PF08751 TrwC relaxase KQ252_18715 PF07057 DNA helicase TraI KQ252_18715 PF18340 DNA relaxase TraI 2B/2B-like domain KQ252_18750 PF00239 Resolvase, N terminal domain KQ252_18750 PF02796 Helix-turn-helix domain of resolvase KQ252_18765 PF01464 Transglycosylase SLT domain KQ252_18800 PF13098 Thioredoxin-like domain KQ252_18800 PF10411 Disulfide bond isomerase protein N-terminus KQ252_18835 PF06834 TraU protein KQ252_18845 PF06986 Type-1V conjugative transfer system mating pair stabilisation KQ252_18860 PF06122 Conjugative relaxosome accessory transposon protein KQ252_18880 PF13438 Domain of unknown function (DUF4113) KQ252_18880 PF11798 IMS family HHH motif KQ252_18880 PF00817 impB/mucB/samB family KQ252_18880 PF11799 impB/mucB/samB family C-terminal domain KQ252_18890 PF13936 Helix-turn-helix domain KQ252_18890 PF00665 Integrase core domain KQ252_18910 PF01051 Initiator Replication protein KQ252_18925 PF05973 Phage derived protein Gp49-like (DUF891) KQ252_18945 PF07715 TonB-dependent Receptor Plug Domain KQ252_18945 PF00593 TonB dependent receptor