locus-tag class description FDE89_00010 PF07724 AAA domain (Cdc48 subfamily) FDE89_00010 PF17871 AAA lid domain FDE89_00010 PF02861 Clp amino terminal domain, pathogenicity island component FDE89_00010 PF00004 ATPase family associated with various cellular activities (AAA) FDE89_00010 PF10431 C-terminal, D2-small domain, of ClpB protein FDE89_00025 PF10672 S-adenosylmethionine-dependent methyltransferase FDE89_00025 PF01170 Putative RNA methylase family UPF0020 FDE89_00025 PF02926 THUMP domain FDE89_00035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDE89_00035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDE89_00040 PF01979 Amidohydrolase family FDE89_00045 PF13488 Glycine zipper FDE89_00045 PF00691 OmpA family FDE89_00055 PF13417 Glutathione S-transferase, N-terminal domain FDE89_00055 PF00043 Glutathione S-transferase, C-terminal domain FDE89_00060 PF02390 Putative methyltransferase FDE89_00070 PF02798 Glutathione S-transferase, N-terminal domain FDE89_00070 PF00043 Glutathione S-transferase, C-terminal domain FDE89_00080 PF13192 Thioredoxin domain FDE89_00080 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_00100 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDE89_00100 PF00578 AhpC/TSA family FDE89_00105 PF11898 Domain of unknown function (DUF3418) FDE89_00105 PF00270 DEAD/DEAH box helicase FDE89_00105 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FDE89_00105 PF00271 Helicase conserved C-terminal domain FDE89_00105 PF04408 Helicase associated domain (HA2) FDE89_00110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FDE89_00110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FDE89_00120 PF07690 Major Facilitator Superfamily FDE89_00125 PF03594 Benzoate membrane transport protein FDE89_00130 PF00106 short chain dehydrogenase FDE89_00135 PF00175 Oxidoreductase NAD-binding domain FDE89_00135 PF00111 2Fe-2S iron-sulfur cluster binding domain FDE89_00135 PF00970 Oxidoreductase FAD-binding domain FDE89_00140 PF00866 Ring hydroxylating beta subunit FDE89_00145 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDE89_00145 PF00355 Rieske [2Fe-2S] domain FDE89_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_00150 PF03466 LysR substrate binding domain FDE89_00160 PF00403 Heavy-metal-associated domain FDE89_00165 PF09278 MerR, DNA binding FDE89_00165 PF00376 MerR family regulatory protein FDE89_00205 PF13742 OB-fold nucleic acid binding domain FDE89_00205 PF02601 Exonuclease VII, large subunit FDE89_00240 PF01810 LysE type translocator FDE89_00245 PF00313 'Cold-shock' DNA-binding domain FDE89_00255 PF03807 NADP oxidoreductase coenzyme F420-dependent FDE89_00255 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDE89_00285 PF07690 Major Facilitator Superfamily FDE89_00290 PF01638 HxlR-like helix-turn-helix FDE89_00320 PF09190 DALR domain FDE89_00320 PF01406 tRNA synthetases class I (C) catalytic domain FDE89_00325 PF01380 SIS domain FDE89_00325 PF00571 CBS domain FDE89_00340 PF03968 OstA-like protein FDE89_00345 PF00005 ABC transporter FDE89_00345 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDE89_00350 PF02321 Outer membrane efflux protein FDE89_00355 PF00005 ABC transporter FDE89_00355 PF03412 Peptidase C39 family FDE89_00355 PF00664 ABC transporter transmembrane region FDE89_00370 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_00380 PF01596 O-methyltransferase FDE89_00390 PF11953 Domain of unknown function (DUF3470) FDE89_00390 PF00037 4Fe-4S binding domain FDE89_00400 PF01624 MutS domain I FDE89_00400 PF05192 MutS domain III FDE89_00400 PF05190 MutS family domain IV FDE89_00400 PF05188 MutS domain II FDE89_00400 PF00488 MutS domain V FDE89_00405 PF01037 Lrp/AsnC ligand binding domain FDE89_00410 PF00892 EamA-like transporter family FDE89_00415 PF03707 Bacterial signalling protein N terminal repeat FDE89_00415 PF00990 Diguanylate cyclase, GGDEF domain FDE89_00415 PF00563 EAL domain FDE89_00420 PF03279 Bacterial lipid A biosynthesis acyltransferase FDE89_00435 PF07690 Major Facilitator Superfamily FDE89_00455 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDE89_00455 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDE89_00475 PF13419 Haloacid dehalogenase-like hydrolase FDE89_00490 PF16671 Actin cross-linking domain FDE89_00490 PF04717 Type VI secretion system, phage-baseplate injector FDE89_00495 PF14220 Domain of unknown function (DUF4329) FDE89_00495 PF05593 RHS Repeat FDE89_00495 PF03527 RHS protein FDE89_00510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_00510 PF03466 LysR substrate binding domain FDE89_00515 PF01566 Natural resistance-associated macrophage protein FDE89_00520 PF03746 LamB/YcsF family FDE89_00525 PF07286 Protein of unknown function (DUF1445) FDE89_00535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDE89_00535 PF00364 Biotin-requiring enzyme FDE89_00535 PF00289 Biotin carboxylase, N-terminal domain FDE89_00535 PF02785 Biotin carboxylase C-terminal domain FDE89_00540 PF00654 Voltage gated chloride channel FDE89_00565 PF00440 Bacterial regulatory proteins, tetR family FDE89_00590 PF00289 Biotin carboxylase, N-terminal domain FDE89_00590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDE89_00590 PF02785 Biotin carboxylase C-terminal domain FDE89_00595 PF02525 Flavodoxin-like fold FDE89_00615 PF01402 Ribbon-helix-helix protein, copG family FDE89_00615 PF08753 NikR C terminal nickel binding domain FDE89_00620 PF01425 Amidase FDE89_00625 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDE89_00630 PF00005 ABC transporter FDE89_00710 PF01389 OmpA-like transmembrane domain FDE89_00710 PF00691 OmpA family FDE89_00720 PF00004 ATPase family associated with various cellular activities (AAA) FDE89_00720 PF07724 AAA domain (Cdc48 subfamily) FDE89_00720 PF17871 AAA lid domain FDE89_00720 PF10431 C-terminal, D2-small domain, of ClpB protein FDE89_00750 PF03466 LysR substrate binding domain FDE89_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_00760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDE89_00765 PF07690 Major Facilitator Superfamily FDE89_00780 PF02677 Epoxyqueuosine reductase QueH FDE89_00790 PF00376 MerR family regulatory protein FDE89_00790 PF09278 MerR, DNA binding FDE89_00805 PF00701 Dihydrodipicolinate synthetase family FDE89_00815 PF00392 Bacterial regulatory proteins, gntR family FDE89_00820 PF05544 Proline racemase FDE89_00825 PF01266 FAD dependent oxidoreductase FDE89_00835 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_00835 PF04324 BFD-like [2Fe-2S] binding domain FDE89_00845 PF00083 Sugar (and other) transporter FDE89_00850 PF00171 Aldehyde dehydrogenase family FDE89_00855 PF13520 Amino acid permease FDE89_00860 PF03315 Serine dehydratase beta chain FDE89_00860 PF03313 Serine dehydratase alpha chain FDE89_00865 PF01575 MaoC like domain FDE89_00865 PF00171 Aldehyde dehydrogenase family FDE89_00870 PF05138 Phenylacetic acid catabolic protein FDE89_00875 PF06243 Phenylacetic acid degradation B FDE89_00880 PF05138 Phenylacetic acid catabolic protein FDE89_00885 PF01883 Iron-sulfur cluster assembly protein FDE89_00890 PF00970 Oxidoreductase FAD-binding domain FDE89_00890 PF00175 Oxidoreductase NAD-binding domain FDE89_00890 PF00111 2Fe-2S iron-sulfur cluster binding domain FDE89_00895 PF00378 Enoyl-CoA hydratase/isomerase FDE89_00900 PF00378 Enoyl-CoA hydratase/isomerase FDE89_00905 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FDE89_00905 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDE89_00905 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDE89_00910 PF02803 Thiolase, C-terminal domain FDE89_00910 PF00108 Thiolase, N-terminal domain FDE89_00915 PF00501 AMP-binding enzyme FDE89_00915 PF14535 AMP-binding enzyme C-terminal domain FDE89_00920 PF07848 PaaX-like protein FDE89_00920 PF08223 PaaX-like protein C-terminal domain FDE89_00925 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_00930 PF03061 Thioesterase superfamily FDE89_00970 PF00199 Catalase FDE89_00975 PF01292 Prokaryotic cytochrome b561 FDE89_00995 PF12697 Alpha/beta hydrolase family FDE89_01000 PF01613 Flavin reductase like domain FDE89_01005 PF00296 Luciferase-like monooxygenase FDE89_01010 PF00171 Aldehyde dehydrogenase family FDE89_01020 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDE89_01030 PF00171 Aldehyde dehydrogenase family FDE89_01035 PF02627 Carboxymuconolactone decarboxylase family FDE89_01040 PF03466 LysR substrate binding domain FDE89_01040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01045 PF02525 Flavodoxin-like fold FDE89_01050 PF01614 Bacterial transcriptional regulator FDE89_01050 PF09339 IclR helix-turn-helix domain FDE89_01060 PF07702 UTRA domain FDE89_01060 PF00392 Bacterial regulatory proteins, gntR family FDE89_01070 PF00005 ABC transporter FDE89_01070 PF08402 TOBE domain FDE89_01075 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_01080 PF01266 FAD dependent oxidoreductase FDE89_01085 PF00266 Aminotransferase class-V FDE89_01090 PF13419 Haloacid dehalogenase-like hydrolase FDE89_01095 PF07690 Major Facilitator Superfamily FDE89_01100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_01100 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_01100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_01105 PF02515 CoA-transferase family III FDE89_01110 PF09339 IclR helix-turn-helix domain FDE89_01115 PF00378 Enoyl-CoA hydratase/isomerase FDE89_01120 PF03060 Nitronate monooxygenase FDE89_01125 PF07690 Major Facilitator Superfamily FDE89_01130 PF09339 IclR helix-turn-helix domain FDE89_01135 PF00108 Thiolase, N-terminal domain FDE89_01135 PF02803 Thiolase, C-terminal domain FDE89_01140 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FDE89_01140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDE89_01140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDE89_01150 PF00378 Enoyl-CoA hydratase/isomerase FDE89_01155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_01155 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_01155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_01160 PF07690 Major Facilitator Superfamily FDE89_01165 PF01144 Coenzyme A transferase FDE89_01170 PF01144 Coenzyme A transferase FDE89_01180 PF07690 Major Facilitator Superfamily FDE89_01190 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_01190 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDE89_01190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_01190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_01205 PF03466 LysR substrate binding domain FDE89_01205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01210 PF00682 HMGL-like FDE89_01215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDE89_01215 PF02785 Biotin carboxylase C-terminal domain FDE89_01215 PF00364 Biotin-requiring enzyme FDE89_01215 PF00289 Biotin carboxylase, N-terminal domain FDE89_01220 PF00378 Enoyl-CoA hydratase/isomerase FDE89_01225 PF01039 Carboxyl transferase domain FDE89_01230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_01230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_01230 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_01235 PF00440 Bacterial regulatory proteins, tetR family FDE89_01240 PF13193 AMP-binding enzyme C-terminal domain FDE89_01240 PF00501 AMP-binding enzyme FDE89_01260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01260 PF03466 LysR substrate binding domain FDE89_01290 PF02464 Competence-damaged protein FDE89_01290 PF18146 Damage-inducible protein CinA KH domain FDE89_01290 PF00994 Probable molybdopterin binding domain FDE89_01300 PF00199 Catalase FDE89_01300 PF18011 C-terminal domain found in long catalases FDE89_01300 PF06628 Catalase-related immune-responsive FDE89_01325 PF00717 Peptidase S24-like FDE89_01335 PF13404 AsnC-type helix-turn-helix domain FDE89_01335 PF01037 Lrp/AsnC ligand binding domain FDE89_01345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_01345 PF00512 His Kinase A (phospho-acceptor) domain FDE89_01345 PF00072 Response regulator receiver domain FDE89_01345 PF09308 LuxQ, periplasmic FDE89_01350 PF00072 Response regulator receiver domain FDE89_01365 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_01370 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_01375 PF00005 ABC transporter FDE89_01380 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDE89_01385 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDE89_01395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01395 PF03466 LysR substrate binding domain FDE89_01400 PF01810 LysE type translocator FDE89_01405 PF00266 Aminotransferase class-V FDE89_01415 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_01420 PF00581 Rhodanese-like domain FDE89_01430 PF03466 LysR substrate binding domain FDE89_01430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01435 PF02798 Glutathione S-transferase, N-terminal domain FDE89_01440 PF02798 Glutathione S-transferase, N-terminal domain FDE89_01440 PF14834 Glutathione S-transferase, C-terminal domain FDE89_01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01445 PF03466 LysR substrate binding domain FDE89_01450 PF03788 LrgA family FDE89_01455 PF04172 LrgB-like family FDE89_01460 PF00155 Aminotransferase class I and II FDE89_01460 PF00392 Bacterial regulatory proteins, gntR family FDE89_01475 PF07690 Major Facilitator Superfamily FDE89_01480 PF16957 Malonate decarboxylase, alpha subunit, transporter FDE89_01485 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FDE89_01490 PF06857 Malonate decarboxylase delta subunit (MdcD) FDE89_01505 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FDE89_01510 PF00698 Acyl transferase domain FDE89_01525 PF03466 LysR substrate binding domain FDE89_01525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01530 PF00392 Bacterial regulatory proteins, gntR family FDE89_01530 PF00155 Aminotransferase class I and II FDE89_01540 PF02322 Cytochrome bd terminal oxidase subunit II FDE89_01545 PF01654 Cytochrome bd terminal oxidase subunit I FDE89_01560 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_01560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_01560 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDE89_01565 PF00296 Luciferase-like monooxygenase FDE89_01570 PF00083 Sugar (and other) transporter FDE89_01580 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDE89_01585 PF00005 ABC transporter FDE89_01590 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_01595 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FDE89_01600 PF01177 Asp/Glu/Hydantoin racemase FDE89_01605 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDE89_01615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01615 PF03466 LysR substrate binding domain FDE89_01625 PF13382 Adenine deaminase C-terminal domain FDE89_01625 PF01979 Amidohydrolase family FDE89_01635 PF03960 ArsC family FDE89_01640 PF01022 Bacterial regulatory protein, arsR family FDE89_01645 PF01758 Sodium Bile acid symporter family FDE89_01650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01650 PF03466 LysR substrate binding domain FDE89_01665 PF13192 Thioredoxin domain FDE89_01665 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_01680 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_01685 PF00588 SpoU rRNA Methylase family FDE89_01690 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDE89_01690 PF01336 OB-fold nucleic acid binding domain FDE89_01690 PF02811 PHP domain FDE89_01690 PF14579 Helix-hairpin-helix motif FDE89_01690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDE89_01695 PF00710 Asparaginase, N-terminal FDE89_01695 PF17763 Glutaminase/Asparaginase C-terminal domain FDE89_01700 PF00375 Sodium:dicarboxylate symporter family FDE89_01705 PF00155 Aminotransferase class I and II FDE89_01710 PF01641 SelR domain FDE89_01715 PF00255 Glutathione peroxidase FDE89_01730 PF00155 Aminotransferase class I and II FDE89_01735 PF01966 HD domain FDE89_01735 PF01909 Nucleotidyltransferase domain FDE89_01735 PF08335 GlnD PII-uridylyltransferase FDE89_01740 PF02222 ATP-grasp domain FDE89_01750 PF05437 Branched-chain amino acid transport protein (AzlD) FDE89_01755 PF03591 AzlC protein FDE89_01780 PF01926 50S ribosome-binding GTPase FDE89_01780 PF06071 Protein of unknown function (DUF933) FDE89_01785 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_01790 PF00005 ABC transporter FDE89_01790 PF09383 NIL domain FDE89_01795 PF03180 NLPA lipoprotein FDE89_01800 PF03180 NLPA lipoprotein FDE89_01805 PF00296 Luciferase-like monooxygenase FDE89_01815 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDE89_01815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_01830 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_01835 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_01840 PF00005 ABC transporter FDE89_01850 PF01037 Lrp/AsnC ligand binding domain FDE89_01855 PF01709 Transcriptional regulator FDE89_01865 PF00440 Bacterial regulatory proteins, tetR family FDE89_01885 PF03466 LysR substrate binding domain FDE89_01885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_01895 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDE89_01905 PF00892 EamA-like transporter family FDE89_01935 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FDE89_01935 PF02753 Pili assembly chaperone PapD, C-terminal domain FDE89_01940 PF16970 Type-1 fimbrial protein, A FDE89_01955 PF06968 Biotin and Thiamin Synthesis associated domain FDE89_01955 PF04055 Radical SAM superfamily FDE89_01960 PF08331 Domain of unknown function (DUF1730) FDE89_01965 PF03853 YjeF-related protein N-terminus FDE89_01965 PF01256 Carbohydrate kinase FDE89_01970 PF02075 Crossover junction endodeoxyribonuclease RuvC FDE89_01985 PF00905 Penicillin binding protein transpeptidase domain FDE89_02005 PF00438 S-adenosylmethionine synthetase, N-terminal domain FDE89_02005 PF02772 S-adenosylmethionine synthetase, central domain FDE89_02005 PF02773 S-adenosylmethionine synthetase, C-terminal domain FDE89_02010 PF00456 Transketolase, thiamine diphosphate binding domain FDE89_02010 PF02780 Transketolase, C-terminal domain FDE89_02010 PF02779 Transketolase, pyrimidine binding domain FDE89_02020 PF04264 YceI-like domain FDE89_02030 PF09992 Phosphodiester glycosidase FDE89_02040 PF05958 tRNA (Uracil-5-)-methyltransferase FDE89_02045 PF04229 GrpB protein FDE89_02050 PF14850 DNA-binding domain of Proline dehydrogenase FDE89_02050 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FDE89_02050 PF00171 Aldehyde dehydrogenase family FDE89_02050 PF01619 Proline dehydrogenase FDE89_02055 PF01037 Lrp/AsnC ligand binding domain FDE89_02060 PF00474 Sodium:solute symporter family FDE89_02065 PF02146 Sir2 family FDE89_02070 PF01597 Glycine cleavage H-protein FDE89_02075 PF12833 Helix-turn-helix domain FDE89_02075 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDE89_02085 PF00005 ABC transporter FDE89_02085 PF00664 ABC transporter transmembrane region FDE89_02090 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FDE89_02095 PF06912 Protein of unknown function (DUF1275) FDE89_02100 PF00375 Sodium:dicarboxylate symporter family FDE89_02115 PF08007 Cupin superfamily protein FDE89_02120 PF02545 Maf-like protein FDE89_02130 PF00162 Phosphoglycerate kinase FDE89_02140 PF01116 Fructose-bisphosphate aldolase class-II FDE89_02145 PF00639 PPIC-type PPIASE domain FDE89_02145 PF09312 SurA N-terminal domain FDE89_02150 PF03968 OstA-like protein FDE89_02150 PF04453 LPS transport system D FDE89_02155 PF01636 Phosphotransferase enzyme family FDE89_02160 PF00483 Nucleotidyl transferase FDE89_02165 PF02527 rRNA small subunit methyltransferase G FDE89_02170 PF13614 AAA domain FDE89_02175 PF02195 ParB-like nuclease domain FDE89_02175 PF17762 HTH domain found in ParB protein FDE89_02180 PF01618 MotA/TolQ/ExbB proton channel family FDE89_02190 PF00664 ABC transporter transmembrane region FDE89_02190 PF00005 ABC transporter FDE89_02195 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FDE89_02200 PF02348 Cytidylyltransferase FDE89_02205 PF09115 DNA polymerase III, delta subunit, C terminal FDE89_02215 PF01026 TatD related DNase FDE89_02230 PF07963 Prokaryotic N-terminal methylation motif FDE89_02230 PF02501 Type II secretion system (T2SS), protein I FDE89_02235 PF11612 Type II secretion system (T2SS), protein J FDE89_02235 PF07963 Prokaryotic N-terminal methylation motif FDE89_02240 PF03934 Type II secretion system (T2SS), protein K FDE89_02250 PF03167 Uracil DNA glycosylase superfamily FDE89_02260 PF14437 MafB19-like deaminase FDE89_02270 PF02224 Cytidylate kinase FDE89_02275 PF00575 S1 RNA binding domain FDE89_02280 PF00216 Bacterial DNA-binding protein FDE89_02290 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FDE89_02300 PF00743 Flavin-binding monooxygenase-like FDE89_02310 PF03969 AFG1-like ATPase FDE89_02315 PF01274 Malate synthase FDE89_02325 PF02472 Biopolymer transport protein ExbD/TolR FDE89_02330 PF02472 Biopolymer transport protein ExbD/TolR FDE89_02335 PF01618 MotA/TolQ/ExbB proton channel family FDE89_02345 PF00593 TonB dependent receptor FDE89_02345 PF07715 TonB-dependent Receptor Plug Domain FDE89_02365 PF01432 Peptidase family M3 FDE89_02370 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_02375 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_02380 PF00005 ABC transporter FDE89_02380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDE89_02395 PF00459 Inositol monophosphatase family FDE89_02405 PF01649 Ribosomal protein S20 FDE89_02410 PF13460 NAD(P)H-binding FDE89_02415 PF03737 Aldolase/RraA FDE89_02435 PF00271 Helicase conserved C-terminal domain FDE89_02435 PF02559 CarD-like/TRCF domain FDE89_02435 PF17757 UvrB interaction domain FDE89_02435 PF03461 TRCF domain FDE89_02435 PF00270 DEAD/DEAH box helicase FDE89_02445 PF00211 Adenylate and Guanylate cyclase catalytic domain FDE89_02450 PF00111 2Fe-2S iron-sulfur cluster binding domain FDE89_02455 PF00012 Hsp70 protein FDE89_02460 PF00226 DnaJ domain FDE89_02460 PF07743 HSCB C-terminal oligomerisation domain FDE89_02465 PF01521 Iron-sulphur cluster biosynthesis FDE89_02470 PF01592 NifU-like N terminal domain FDE89_02475 PF00266 Aminotransferase class-V FDE89_02480 PF02082 Transcriptional regulator FDE89_02495 PF00216 Bacterial DNA-binding protein FDE89_02500 PF00639 PPIC-type PPIASE domain FDE89_02500 PF09312 SurA N-terminal domain FDE89_02505 PF12833 Helix-turn-helix domain FDE89_02505 PF12852 Cupin FDE89_02510 PF00487 Fatty acid desaturase FDE89_02515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_02515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_02515 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_02520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_02520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_02520 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_02525 PF03109 ABC1 family FDE89_02535 PF04073 Aminoacyl-tRNA editing domain FDE89_02540 PF04183 IucA / IucC family FDE89_02540 PF06276 Ferric iron reductase FhuF-like transporter FDE89_02545 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FDE89_02550 PF07690 Major Facilitator Superfamily FDE89_02555 PF06276 Ferric iron reductase FhuF-like transporter FDE89_02555 PF04183 IucA / IucC family FDE89_02560 PF04183 IucA / IucC family FDE89_02560 PF06276 Ferric iron reductase FhuF-like transporter FDE89_02575 PF07715 TonB-dependent Receptor Plug Domain FDE89_02575 PF00593 TonB dependent receptor FDE89_02615 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FDE89_02620 PF02277 Phosphoribosyltransferase FDE89_02635 PF02654 Cobalamin-5-phosphate synthase FDE89_02640 PF00793 DAHP synthetase I family FDE89_02645 PF01925 Sulfite exporter TauE/SafE FDE89_02665 PF00593 TonB dependent receptor FDE89_02665 PF07715 TonB-dependent Receptor Plug Domain FDE89_02670 PF02684 Lipid-A-disaccharide synthetase FDE89_02680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDE89_02720 PF01230 HIT domain FDE89_02755 PF08241 Methyltransferase domain FDE89_02760 PF00561 alpha/beta hydrolase fold FDE89_02765 PF01053 Cys/Met metabolism PLP-dependent enzyme FDE89_02775 PF02575 YbaB/EbfC DNA-binding family FDE89_02780 PF02132 RecR protein FDE89_02780 PF13662 Toprim domain FDE89_02785 PF01612 3'-5' exonuclease FDE89_02785 PF00570 HRDC domain FDE89_02805 PF05166 YcgL domain FDE89_02815 PF01434 Peptidase family M41 FDE89_02815 PF17862 AAA+ lid domain FDE89_02815 PF00004 ATPase family associated with various cellular activities (AAA) FDE89_02825 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_02830 PF05175 Methyltransferase small domain FDE89_02835 PF01264 Chorismate synthase FDE89_02840 PF00990 Diguanylate cyclase, GGDEF domain FDE89_02840 PF08448 PAS fold FDE89_02855 PF04055 Radical SAM superfamily FDE89_02860 PF00676 Dehydrogenase E1 component FDE89_02865 PF02779 Transketolase, pyrimidine binding domain FDE89_02865 PF02780 Transketolase, C-terminal domain FDE89_02870 PF00364 Biotin-requiring enzyme FDE89_02870 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDE89_02870 PF02817 e3 binding domain FDE89_02875 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_02875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDE89_02880 PF00106 short chain dehydrogenase FDE89_02885 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_02885 PF00107 Zinc-binding dehydrogenase FDE89_02890 PF01062 Bestrophin, RFP-TM, chloride channel FDE89_02895 PF02954 Bacterial regulatory protein, Fis family FDE89_02895 PF00072 Response regulator receiver domain FDE89_02895 PF00158 Sigma-54 interaction domain FDE89_02900 PF04273 Putative phosphatase (DUF442) FDE89_02900 PF00753 Metallo-beta-lactamase superfamily FDE89_02905 PF04273 Putative phosphatase (DUF442) FDE89_02905 PF00753 Metallo-beta-lactamase superfamily FDE89_02910 PF01925 Sulfite exporter TauE/SafE FDE89_02925 PF12833 Helix-turn-helix domain FDE89_02925 PF06445 GyrI-like small molecule binding domain FDE89_02930 PF01638 HxlR-like helix-turn-helix FDE89_02935 PF02525 Flavodoxin-like fold FDE89_02960 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDE89_02965 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_02970 PF00005 ABC transporter FDE89_02985 PF00083 Sugar (and other) transporter FDE89_02990 PF00593 TonB dependent receptor FDE89_02990 PF07715 TonB-dependent Receptor Plug Domain FDE89_02995 PF10415 Fumarase C C-terminus FDE89_02995 PF00206 Lyase FDE89_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_03010 PF03466 LysR substrate binding domain FDE89_03015 PF03466 LysR substrate binding domain FDE89_03015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_03020 PF02803 Thiolase, C-terminal domain FDE89_03020 PF00108 Thiolase, N-terminal domain FDE89_03025 PF02667 Short chain fatty acid transporter FDE89_03030 PF01144 Coenzyme A transferase FDE89_03035 PF01144 Coenzyme A transferase FDE89_03040 PF03466 LysR substrate binding domain FDE89_03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_03065 PF06719 AraC-type transcriptional regulator N-terminus FDE89_03065 PF12833 Helix-turn-helix domain FDE89_03075 PF01738 Dienelactone hydrolase family FDE89_03090 PF01613 Flavin reductase like domain FDE89_03100 PF14525 AraC-binding-like domain FDE89_03100 PF12833 Helix-turn-helix domain FDE89_03105 PF00111 2Fe-2S iron-sulfur cluster binding domain FDE89_03105 PF00970 Oxidoreductase FAD-binding domain FDE89_03105 PF00175 Oxidoreductase NAD-binding domain FDE89_03110 PF00866 Ring hydroxylating beta subunit FDE89_03115 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDE89_03115 PF00355 Rieske [2Fe-2S] domain FDE89_03120 PF03459 TOBE domain FDE89_03120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_03130 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_03135 PF00005 ABC transporter FDE89_03135 PF03459 TOBE domain FDE89_03140 PF00106 short chain dehydrogenase FDE89_03145 PF00550 Phosphopantetheine attachment site FDE89_03145 PF00857 Isochorismatase family FDE89_03155 PF00149 Calcineurin-like phosphoesterase FDE89_03160 PF13089 Polyphosphate kinase N-terminal domain FDE89_03160 PF17941 Polyphosphate kinase C-terminal domain 1 FDE89_03160 PF13090 Polyphosphate kinase C-terminal domain 2 FDE89_03160 PF02503 Polyphosphate kinase middle domain FDE89_03165 PF08042 PqqA family FDE89_03170 PF12706 Beta-lactamase superfamily domain FDE89_03175 PF03070 TENA/THI-4/PQQC family FDE89_03180 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FDE89_03185 PF13186 Iron-sulfur cluster-binding domain FDE89_03185 PF04055 Radical SAM superfamily FDE89_03190 PF01244 Membrane dipeptidase (Peptidase family M19) FDE89_03210 PF13091 PLD-like domain FDE89_03225 PF00199 Catalase FDE89_03235 PF00107 Zinc-binding dehydrogenase FDE89_03235 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_03245 PF00419 Fimbrial protein FDE89_03250 PF13954 PapC N-terminal domain FDE89_03250 PF13953 PapC C-terminal domain FDE89_03250 PF00577 Outer membrane usher protein FDE89_03255 PF02753 Pili assembly chaperone PapD, C-terminal domain FDE89_03255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FDE89_03265 PF16970 Type-1 fimbrial protein, A FDE89_03285 PF01266 FAD dependent oxidoreductase FDE89_03300 PF01593 Flavin containing amine oxidoreductase FDE89_03305 PF00743 Flavin-binding monooxygenase-like FDE89_03310 PF12146 Serine aminopeptidase, S33 FDE89_03315 PF02321 Outer membrane efflux protein FDE89_03320 PF00873 AcrB/AcrD/AcrF family FDE89_03325 PF00529 HlyD membrane-fusion protein of T1SS FDE89_03325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDE89_03330 PF00486 Transcriptional regulatory protein, C terminal FDE89_03330 PF00072 Response regulator receiver domain FDE89_03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_03335 PF00672 HAMP domain FDE89_03335 PF00512 His Kinase A (phospho-acceptor) domain FDE89_03335 PF16527 Two-component sensor protein CpxA, periplasmic domain FDE89_03345 PF12833 Helix-turn-helix domain FDE89_03345 PF02311 AraC-like ligand binding domain FDE89_03350 PF12146 Serine aminopeptidase, S33 FDE89_03405 PF02824 TGS domain FDE89_03405 PF04607 Region found in RelA / SpoT proteins FDE89_03405 PF13291 ACT domain FDE89_03415 PF01975 Survival protein SurE FDE89_03440 PF07690 Major Facilitator Superfamily FDE89_03445 PF13533 Biotin-lipoyl like FDE89_03450 PF01425 Amidase FDE89_03455 PF00196 Bacterial regulatory proteins, luxR family FDE89_03535 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDE89_03540 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDE89_03540 PF14572 Phosphoribosyl synthetase-associated domain FDE89_03560 PF00005 ABC transporter FDE89_03575 PF00107 Zinc-binding dehydrogenase FDE89_03575 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_03590 PF12833 Helix-turn-helix domain FDE89_03590 PF06719 AraC-type transcriptional regulator N-terminus FDE89_03595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDE89_03595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDE89_03600 PF07690 Major Facilitator Superfamily FDE89_03610 PF03466 LysR substrate binding domain FDE89_03610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_03620 PF00920 Dehydratase family FDE89_03625 PF00171 Aldehyde dehydrogenase family FDE89_03640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDE89_03640 PF00529 HlyD membrane-fusion protein of T1SS FDE89_03660 PF03737 Aldolase/RraA FDE89_03665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDE89_03665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDE89_03665 PF01842 ACT domain FDE89_03670 PF07690 Major Facilitator Superfamily FDE89_03690 PF03466 LysR substrate binding domain FDE89_03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_03700 PF08450 SMP-30/Gluconolactonase/LRE-like region FDE89_03715 PF04909 Amidohydrolase FDE89_03720 PF07690 Major Facilitator Superfamily FDE89_03735 PF04829 Pre-toxin domain with VENN motif FDE89_03735 PF05860 haemagglutination activity domain FDE89_03735 PF13332 Hemagglutinin repeat FDE89_03735 PF13018 Extended Signal Peptide of Type V secretion system FDE89_03740 PF08479 POTRA domain, ShlB-type FDE89_03740 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FDE89_03740 PF17287 POTRA domain FDE89_03755 PF01546 Peptidase family M20/M25/M40 FDE89_03755 PF07687 Peptidase dimerisation domain FDE89_03765 PF02254 TrkA-N domain FDE89_03765 PF00999 Sodium/hydrogen exchanger family FDE89_03770 PF07995 Glucose / Sorbosone dehydrogenase FDE89_03780 PF00857 Isochorismatase family FDE89_03790 PF08359 YsiA-like protein, C-terminal region FDE89_03790 PF00440 Bacterial regulatory proteins, tetR family FDE89_03795 PF12706 Beta-lactamase superfamily domain FDE89_03805 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_03815 PF00376 MerR family regulatory protein FDE89_03815 PF09278 MerR, DNA binding FDE89_03820 PF01872 RibD C-terminal domain FDE89_03825 PF00106 short chain dehydrogenase FDE89_03830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDE89_03830 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_03835 PF01047 MarR family FDE89_03840 PF07859 alpha/beta hydrolase fold FDE89_03860 PF00199 Catalase FDE89_03860 PF06628 Catalase-related immune-responsive FDE89_03865 PF00561 alpha/beta hydrolase fold FDE89_03875 PF00171 Aldehyde dehydrogenase family FDE89_03880 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_03880 PF00107 Zinc-binding dehydrogenase FDE89_03885 PF00474 Sodium:solute symporter family FDE89_03890 PF04341 Protein of unknown function, DUF485 FDE89_03895 PF13193 AMP-binding enzyme C-terminal domain FDE89_03895 PF00501 AMP-binding enzyme FDE89_03900 PF02954 Bacterial regulatory protein, Fis family FDE89_03900 PF06506 Propionate catabolism activator FDE89_03900 PF00158 Sigma-54 interaction domain FDE89_03910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_03910 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_03910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_03930 PF00171 Aldehyde dehydrogenase family FDE89_03940 PF07690 Major Facilitator Superfamily FDE89_03945 PF00920 Dehydratase family FDE89_03950 PF07729 FCD domain FDE89_03950 PF00392 Bacterial regulatory proteins, gntR family FDE89_03960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_03960 PF03466 LysR substrate binding domain FDE89_03965 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDE89_03965 PF13378 Enolase C-terminal domain-like FDE89_03970 PF02426 Muconolactone delta-isomerase FDE89_03975 PF04444 Catechol dioxygenase N terminus FDE89_03975 PF00775 Dioxygenase FDE89_03980 PF01144 Coenzyme A transferase FDE89_03985 PF01144 Coenzyme A transferase FDE89_03990 PF02803 Thiolase, C-terminal domain FDE89_03990 PF00108 Thiolase, N-terminal domain FDE89_03995 PF12146 Serine aminopeptidase, S33 FDE89_04000 PF01804 Penicillin amidase FDE89_04005 PF00171 Aldehyde dehydrogenase family FDE89_04030 PF02311 AraC-like ligand binding domain FDE89_04030 PF12833 Helix-turn-helix domain FDE89_04035 PF01613 Flavin reductase like domain FDE89_04040 PF00175 Oxidoreductase NAD-binding domain FDE89_04040 PF00111 2Fe-2S iron-sulfur cluster binding domain FDE89_04055 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDE89_04055 PF00355 Rieske [2Fe-2S] domain FDE89_04070 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDE89_04075 PF01425 Amidase FDE89_04085 PF07690 Major Facilitator Superfamily FDE89_04095 PF00106 short chain dehydrogenase FDE89_04110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_04110 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_04110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_04115 PF03466 LysR substrate binding domain FDE89_04120 PF01614 Bacterial transcriptional regulator FDE89_04120 PF09339 IclR helix-turn-helix domain FDE89_04125 PF00753 Metallo-beta-lactamase superfamily FDE89_04135 PF04143 Sulphur transport FDE89_04145 PF13360 PQQ-like domain FDE89_04145 PF01011 PQQ enzyme repeat FDE89_04155 PF05048 Periplasmic copper-binding protein (NosD) FDE89_04160 PF01487 Type I 3-dehydroquinase FDE89_04165 PF00775 Dioxygenase FDE89_04170 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FDE89_04170 PF00775 Dioxygenase FDE89_04175 PF02627 Carboxymuconolactone decarboxylase family FDE89_04180 PF07690 Major Facilitator Superfamily FDE89_04185 PF00561 alpha/beta hydrolase fold FDE89_04190 PF10397 Adenylosuccinate lyase C-terminus FDE89_04190 PF00206 Lyase FDE89_04195 PF00108 Thiolase, N-terminal domain FDE89_04195 PF02803 Thiolase, C-terminal domain FDE89_04200 PF01144 Coenzyme A transferase FDE89_04205 PF01144 Coenzyme A transferase FDE89_04210 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FDE89_04215 PF04977 Septum formation initiator FDE89_04220 PF04239 Protein of unknown function (DUF421) FDE89_04225 PF03952 Enolase, N-terminal domain FDE89_04225 PF00113 Enolase, C-terminal TIM barrel domain FDE89_04230 PF00793 DAHP synthetase I family FDE89_04235 PF06418 CTP synthase N-terminus FDE89_04235 PF00117 Glutamine amidotransferase class-I FDE89_04265 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_04265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDE89_04280 PF00793 DAHP synthetase I family FDE89_04285 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FDE89_04290 PF10431 C-terminal, D2-small domain, of ClpB protein FDE89_04290 PF02861 Clp amino terminal domain, pathogenicity island component FDE89_04290 PF07724 AAA domain (Cdc48 subfamily) FDE89_04290 PF17871 AAA lid domain FDE89_04290 PF00004 ATPase family associated with various cellular activities (AAA) FDE89_04295 PF02617 ATP-dependent Clp protease adaptor protein ClpS FDE89_04305 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDE89_04305 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDE89_04320 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FDE89_04325 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_04325 PF00585 C-terminal regulatory domain of Threonine dehydratase FDE89_04330 PF02080 TrkA-C domain FDE89_04330 PF02254 TrkA-N domain FDE89_04340 PF02253 Phospholipase A1 FDE89_04345 PF00675 Insulinase (Peptidase family M16) FDE89_04345 PF05193 Peptidase M16 inactive domain FDE89_04345 PF08367 Peptidase M16C associated FDE89_04350 PF07715 TonB-dependent Receptor Plug Domain FDE89_04350 PF00593 TonB dependent receptor FDE89_04355 PF00294 pfkB family carbohydrate kinase FDE89_04365 PF07290 Protein of unknown function (DUF1449) FDE89_04385 PF01654 Cytochrome bd terminal oxidase subunit I FDE89_04390 PF02322 Cytochrome bd terminal oxidase subunit II FDE89_04395 PF08173 Membrane bound YbgT-like protein FDE89_04410 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FDE89_04420 PF02881 SRP54-type protein, helical bundle domain FDE89_04420 PF00448 SRP54-type protein, GTPase domain FDE89_04445 PF00571 CBS domain FDE89_04445 PF00478 IMP dehydrogenase / GMP reductase domain FDE89_04450 PF00202 Aminotransferase class-III FDE89_04455 PF00462 Glutaredoxin FDE89_04465 PF03466 LysR substrate binding domain FDE89_04465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_04470 PF00557 Metallopeptidase family M24 FDE89_04475 PF05525 Branched-chain amino acid transport protein FDE89_04500 PF00391 PEP-utilising enzyme, mobile domain FDE89_04500 PF05524 PEP-utilising enzyme, N-terminal FDE89_04500 PF02896 PEP-utilising enzyme, TIM barrel domain FDE89_04500 PF00381 PTS HPr component phosphorylation site FDE89_04500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDE89_04505 PF00294 pfkB family carbohydrate kinase FDE89_04510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDE89_04510 PF02378 Phosphotransferase system, EIIC FDE89_04530 PF00563 EAL domain FDE89_04530 PF00990 Diguanylate cyclase, GGDEF domain FDE89_04530 PF03707 Bacterial signalling protein N terminal repeat FDE89_04540 PF07995 Glucose / Sorbosone dehydrogenase FDE89_04545 PF02586 SOS response associated peptidase (SRAP) FDE89_04550 PF01740 STAS domain FDE89_04550 PF00916 Sulfate permease family FDE89_04555 PF00082 Subtilase family FDE89_04555 PF05922 Peptidase inhibitor I9 FDE89_04565 PF00324 Amino acid permease FDE89_04570 PF00266 Aminotransferase class-V FDE89_04575 PF01037 Lrp/AsnC ligand binding domain FDE89_04600 PF13419 Haloacid dehalogenase-like hydrolase FDE89_04605 PF01479 S4 domain FDE89_04610 PF00154 recA bacterial DNA recombination protein FDE89_04615 PF02631 RecX family FDE89_04630 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FDE89_04630 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_04635 PF07977 FabA-like domain FDE89_04640 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FDE89_04640 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_04650 PF07244 Surface antigen variable number repeat FDE89_04650 PF01103 Surface antigen FDE89_04655 PF13180 PDZ domain FDE89_04655 PF17820 PDZ domain FDE89_04655 PF02163 Peptidase family M50 FDE89_04660 PF13288 DXP reductoisomerase C-terminal domain FDE89_04660 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FDE89_04660 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FDE89_04670 PF01255 Putative undecaprenyl diphosphate synthase FDE89_04675 PF01765 Ribosome recycling factor FDE89_04680 PF00696 Amino acid kinase family FDE89_04685 PF00919 Uncharacterized protein family UPF0004 FDE89_04685 PF18693 TRAM domain FDE89_04685 PF04055 Radical SAM superfamily FDE89_04695 PF00512 His Kinase A (phospho-acceptor) domain FDE89_04695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_04695 PF00989 PAS fold FDE89_04700 PF00158 Sigma-54 interaction domain FDE89_04700 PF00072 Response regulator receiver domain FDE89_04700 PF02954 Bacterial regulatory protein, Fis family FDE89_04705 PF00440 Bacterial regulatory proteins, tetR family FDE89_04720 PF02542 YgbB family FDE89_04730 PF01266 FAD dependent oxidoreductase FDE89_04755 PF10415 Fumarase C C-terminus FDE89_04755 PF00206 Lyase FDE89_04760 PF16363 GDP-mannose 4,6 dehydratase FDE89_04765 PF02635 DsrE/DsrF-like family FDE89_04785 PF00892 EamA-like transporter family FDE89_04790 PF00392 Bacterial regulatory proteins, gntR family FDE89_04790 PF00155 Aminotransferase class I and II FDE89_04795 PF01638 HxlR-like helix-turn-helix FDE89_04800 PF03453 MoeA N-terminal region (domain I and II) FDE89_04800 PF00994 Probable molybdopterin binding domain FDE89_04800 PF03454 MoeA C-terminal region (domain IV) FDE89_04805 PF00994 Probable molybdopterin binding domain FDE89_04805 PF01967 MoaC family FDE89_04810 PF02391 MoaE protein FDE89_04820 PF04055 Radical SAM superfamily FDE89_04820 PF06463 Molybdenum Cofactor Synthesis C FDE89_04825 PF00384 Molybdopterin oxidoreductase FDE89_04825 PF01568 Molydopterin dinucleotide binding domain FDE89_04825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDE89_04830 PF12804 MobA-like NTP transferase domain FDE89_04835 PF00384 Molybdopterin oxidoreductase FDE89_04835 PF01568 Molydopterin dinucleotide binding domain FDE89_04835 PF04324 BFD-like [2Fe-2S] binding domain FDE89_04835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDE89_04840 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDE89_04840 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_04840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDE89_04840 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDE89_04840 PF04324 BFD-like [2Fe-2S] binding domain FDE89_04845 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_04845 PF04324 BFD-like [2Fe-2S] binding domain FDE89_04845 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDE89_04845 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDE89_04845 PF13806 Rieske-like [2Fe-2S] domain FDE89_04845 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDE89_04855 PF00486 Transcriptional regulatory protein, C terminal FDE89_04855 PF00072 Response regulator receiver domain FDE89_04860 PF00005 ABC transporter FDE89_04865 PF00817 impB/mucB/samB family FDE89_04865 PF11799 impB/mucB/samB family C-terminal domain FDE89_04865 PF13438 Domain of unknown function (DUF4113) FDE89_04870 PF01220 Dehydroquinase class II FDE89_04875 PF00364 Biotin-requiring enzyme FDE89_04880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDE89_04880 PF00289 Biotin carboxylase, N-terminal domain FDE89_04880 PF02785 Biotin carboxylase C-terminal domain FDE89_04890 PF12832 MFS_1 like family FDE89_04910 PF01645 Conserved region in glutamate synthase FDE89_04925 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FDE89_04925 PF01565 FAD binding domain FDE89_04930 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDE89_04940 PF00465 Iron-containing alcohol dehydrogenase FDE89_04945 PF03061 Thioesterase superfamily FDE89_04950 PF04185 Phosphoesterase family FDE89_04950 PF05506 Domain of unknown function (DUF756) FDE89_04955 PF12170 DNA polymerase III tau subunit V interacting with alpha FDE89_04955 PF12169 DNA polymerase III subunits gamma and tau domain III FDE89_04955 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FDE89_04960 PF07690 Major Facilitator Superfamily FDE89_04985 PF02803 Thiolase, C-terminal domain FDE89_04985 PF00108 Thiolase, N-terminal domain FDE89_04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_04995 PF03466 LysR substrate binding domain FDE89_05005 PF01810 LysE type translocator FDE89_05010 PF01037 Lrp/AsnC ligand binding domain FDE89_05015 PF03594 Benzoate membrane transport protein FDE89_05020 PF02308 MgtC family FDE89_05025 PF00690 Cation transporter/ATPase, N-terminus FDE89_05025 PF00689 Cation transporting ATPase, C-terminus FDE89_05040 PF00582 Universal stress protein family FDE89_05045 PF12848 ABC transporter FDE89_05045 PF00005 ABC transporter FDE89_05065 PF00593 TonB dependent receptor FDE89_05065 PF07715 TonB-dependent Receptor Plug Domain FDE89_05095 PF00924 Mechanosensitive ion channel FDE89_05100 PF07715 TonB-dependent Receptor Plug Domain FDE89_05100 PF00593 TonB dependent receptor FDE89_05105 PF00440 Bacterial regulatory proteins, tetR family FDE89_05120 PF01037 Lrp/AsnC ligand binding domain FDE89_05125 PF01817 Chorismate mutase type II FDE89_05150 PF11940 Domain of unknown function (DUF3458) Ig-like fold FDE89_05150 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FDE89_05150 PF01433 Peptidase family M1 domain FDE89_05165 PF02110 Hydroxyethylthiazole kinase family FDE89_05170 PF06445 GyrI-like small molecule binding domain FDE89_05180 PF14493 Helix-turn-helix domain FDE89_05180 PF05970 PIF1-like helicase FDE89_05185 PF00465 Iron-containing alcohol dehydrogenase FDE89_05200 PF00171 Aldehyde dehydrogenase family FDE89_05205 PF13520 Amino acid permease FDE89_05210 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FDE89_05215 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FDE89_05220 PF00958 GMP synthase C terminal domain FDE89_05220 PF02540 NAD synthase FDE89_05220 PF00117 Glutamine amidotransferase class-I FDE89_05225 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FDE89_05225 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDE89_05230 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDE89_05235 PF00149 Calcineurin-like phosphoesterase FDE89_05245 PF00881 Nitroreductase family FDE89_05255 PF17209 Hfq protein FDE89_05265 PF01119 DNA mismatch repair protein, C-terminal domain FDE89_05265 PF08676 MutL C terminal dimerisation domain FDE89_05270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FDE89_05275 PF01479 S4 domain FDE89_05275 PF00849 RNA pseudouridylate synthase FDE89_05290 PF01479 S4 domain FDE89_05290 PF00849 RNA pseudouridylate synthase FDE89_05300 PF04284 Protein of unknown function (DUF441) FDE89_05305 PF03466 LysR substrate binding domain FDE89_05305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_05320 PF07690 Major Facilitator Superfamily FDE89_05325 PF00027 Cyclic nucleotide-binding domain FDE89_05325 PF00520 Ion transport protein FDE89_05355 PF17243 POTRA domain TamA domain 1 FDE89_05355 PF01103 Surface antigen FDE89_05355 PF07244 Surface antigen variable number repeat FDE89_05360 PF07690 Major Facilitator Superfamily FDE89_05365 PF03232 Ubiquinone biosynthesis protein COQ7 FDE89_05375 PF00120 Glutamine synthetase, catalytic domain FDE89_05380 PF00486 Transcriptional regulatory protein, C terminal FDE89_05380 PF00072 Response regulator receiver domain FDE89_05385 PF02702 Osmosensitive K+ channel His kinase sensor domain FDE89_05385 PF00512 His Kinase A (phospho-acceptor) domain FDE89_05385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_05385 PF13493 Domain of unknown function (DUF4118) FDE89_05390 PF02669 K+-transporting ATPase, c chain FDE89_05400 PF03814 Potassium-transporting ATPase A subunit FDE89_05415 PF03109 ABC1 family FDE89_05420 PF00899 ThiF family FDE89_05425 PF01613 Flavin reductase like domain FDE89_05430 PF00501 AMP-binding enzyme FDE89_05430 PF13193 AMP-binding enzyme C-terminal domain FDE89_05435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_05435 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_05435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_05440 PF00106 short chain dehydrogenase FDE89_05445 PF12833 Helix-turn-helix domain FDE89_05450 PF09084 NMT1/THI5 like FDE89_05455 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_05460 PF17827 PrmC N-terminal domain FDE89_05460 PF13847 Methyltransferase domain FDE89_05465 PF03462 PCRF domain FDE89_05465 PF00472 RF-1 domain FDE89_05475 PF03466 LysR substrate binding domain FDE89_05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_05495 PF00296 Luciferase-like monooxygenase FDE89_05505 PF13994 PgaD-like protein FDE89_05510 PF00535 Glycosyl transferase family 2 FDE89_05515 PF14883 Hypothetical glycosyl hydrolase family 13 FDE89_05515 PF01522 Polysaccharide deacetylase FDE89_05525 PF03618 Kinase/pyrophosphorylase FDE89_05530 PF00391 PEP-utilising enzyme, mobile domain FDE89_05530 PF02896 PEP-utilising enzyme, TIM barrel domain FDE89_05530 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FDE89_05540 PF06481 COX Aromatic Rich Motif FDE89_05540 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FDE89_05545 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDE89_05550 PF00510 Cytochrome c oxidase subunit III FDE89_05555 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FDE89_05560 PF01040 UbiA prenyltransferase family FDE89_05565 PF01250 Ribosomal protein S6 FDE89_05570 PF01084 Ribosomal protein S18 FDE89_05575 PF03948 Ribosomal protein L9, C-terminal domain FDE89_05575 PF01281 Ribosomal protein L9, N-terminal domain FDE89_05580 PF03796 DnaB-like helicase C terminal domain FDE89_05580 PF00772 DnaB-like helicase N terminal domain FDE89_05585 PF00842 Alanine racemase, C-terminal domain FDE89_05585 PF01168 Alanine racemase, N-terminal domain FDE89_05595 PF01841 Transglutaminase-like superfamily FDE89_05595 PF08379 Bacterial transglutaminase-like N-terminal region FDE89_05605 PF14403 Circularly permuted ATP-grasp type 2 FDE89_05635 PF02954 Bacterial regulatory protein, Fis family FDE89_05640 PF01808 AICARFT/IMPCHase bienzyme FDE89_05640 PF02142 MGS-like domain FDE89_05645 PF02844 Phosphoribosylglycinamide synthetase, N domain FDE89_05645 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FDE89_05645 PF02843 Phosphoribosylglycinamide synthetase, C domain FDE89_05650 PF03180 NLPA lipoprotein FDE89_05655 PF00005 ABC transporter FDE89_05655 PF09383 NIL domain FDE89_05660 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_05665 PF00753 Metallo-beta-lactamase superfamily FDE89_05665 PF16123 Hydroxyacylglutathione hydrolase C-terminus FDE89_05675 PF00375 Sodium:dicarboxylate symporter family FDE89_05720 PF03050 Transposase IS66 family FDE89_05720 PF13005 zinc-finger binding domain of transposase IS66 FDE89_05720 PF13007 Transposase C of IS166 homeodomain FDE89_05720 PF13817 IS66 C-terminal element FDE89_05730 PF01636 Phosphotransferase enzyme family FDE89_05755 PF07091 Ribosomal RNA methyltransferase (FmrO) FDE89_05775 PF02470 MlaD protein FDE89_05780 PF04403 Paraquat-inducible protein A FDE89_05790 PF06826 Predicted Permease Membrane Region FDE89_05790 PF02080 TrkA-C domain FDE89_05795 PF00155 Aminotransferase class I and II FDE89_05820 PF00083 Sugar (and other) transporter FDE89_05820 PF08946 Osmosensory transporter coiled coil FDE89_05870 PF00392 Bacterial regulatory proteins, gntR family FDE89_05870 PF07729 FCD domain FDE89_05880 PF03616 Sodium/glutamate symporter FDE89_05910 PF04076 Bacterial OB fold (BOF) protein FDE89_05940 PF00324 Amino acid permease FDE89_05945 PF00171 Aldehyde dehydrogenase family FDE89_05950 PF00202 Aminotransferase class-III FDE89_05955 PF03466 LysR substrate binding domain FDE89_05955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_05980 PF00069 Protein kinase domain FDE89_06000 PF00814 Glycoprotease family FDE89_06005 PF01165 Ribosomal protein S21 FDE89_06010 PF09424 Yqey-like protein FDE89_06015 PF01435 Peptidase family M48 FDE89_06020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDE89_06020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDE89_06040 PF02674 Colicin V production protein FDE89_06045 PF01180 Dihydroorotate dehydrogenase FDE89_06065 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FDE89_06065 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FDE89_06070 PF00881 Nitroreductase family FDE89_06080 PF00271 Helicase conserved C-terminal domain FDE89_06080 PF00270 DEAD/DEAH box helicase FDE89_06085 PF00313 'Cold-shock' DNA-binding domain FDE89_06095 PF04545 Sigma-70, region 4 FDE89_06095 PF04542 Sigma-70 region 2 FDE89_06095 PF00140 Sigma-70 factor, region 1.2 FDE89_06100 PF04241 Protein of unknown function (DUF423) FDE89_06110 PF05690 Thiazole biosynthesis protein ThiG FDE89_06120 PF03883 Peroxide stress protein YaaA FDE89_06130 PF12706 Beta-lactamase superfamily domain FDE89_06135 PF01546 Peptidase family M20/M25/M40 FDE89_06135 PF07687 Peptidase dimerisation domain FDE89_06145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDE89_06150 PF00800 Prephenate dehydratase FDE89_06150 PF01817 Chorismate mutase type II FDE89_06150 PF01842 ACT domain FDE89_06155 PF00756 Putative esterase FDE89_06160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_06160 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_06160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_06165 PF00375 Sodium:dicarboxylate symporter family FDE89_06175 PF00591 Glycosyl transferase family, a/b domain FDE89_06175 PF02885 Glycosyl transferase family, helical bundle domain FDE89_06180 PF07023 Protein of unknown function (DUF1315) FDE89_06185 PF01513 ATP-NAD kinase FDE89_06190 PF00912 Transglycosylase FDE89_06190 PF00905 Penicillin binding protein transpeptidase domain FDE89_06190 PF14814 Bifunctional transglycosylase second domain FDE89_06200 PF00293 NUDIX domain FDE89_06210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_06210 PF08521 Two-component sensor kinase N-terminal FDE89_06210 PF00512 His Kinase A (phospho-acceptor) domain FDE89_06215 PF00072 Response regulator receiver domain FDE89_06215 PF00486 Transcriptional regulatory protein, C terminal FDE89_06225 PF00437 Type II/IV secretion system protein FDE89_06235 PF18389 TrmO C-terminal domain FDE89_06235 PF01980 tRNA-methyltransferase O FDE89_06240 PF00175 Oxidoreductase NAD-binding domain FDE89_06240 PF00970 Oxidoreductase FAD-binding domain FDE89_06245 PF02567 Phenazine biosynthesis-like protein FDE89_06250 PF00155 Aminotransferase class I and II FDE89_06250 PF00392 Bacterial regulatory proteins, gntR family FDE89_06260 PF00037 4Fe-4S binding domain FDE89_06265 PF00893 Small Multidrug Resistance protein FDE89_06270 PF00005 ABC transporter FDE89_06275 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_06280 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_06285 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDE89_06290 PF03466 LysR substrate binding domain FDE89_06290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_06295 PF13533 Biotin-lipoyl like FDE89_06300 PF00873 AcrB/AcrD/AcrF family FDE89_06305 PF02321 Outer membrane efflux protein FDE89_06310 PF00464 Serine hydroxymethyltransferase FDE89_06340 PF00005 ABC transporter FDE89_06345 PF01061 ABC-2 type transporter FDE89_06350 PF14489 QueF-like protein FDE89_06350 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FDE89_06360 PF01098 Cell cycle protein FDE89_06365 PF13406 Transglycosylase SLT domain FDE89_06370 PF03330 Lytic transglycolase FDE89_06370 PF05036 Sporulation related domain FDE89_06390 PF12833 Helix-turn-helix domain FDE89_06400 PF00889 Elongation factor TS FDE89_06405 PF00318 Ribosomal protein S2 FDE89_06420 PF07690 Major Facilitator Superfamily FDE89_06430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDE89_06430 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_06435 PF04055 Radical SAM superfamily FDE89_06440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_06440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_06440 PF09317 Domain of unknown function (DUF1974) FDE89_06455 PF05221 S-adenosyl-L-homocysteine hydrolase FDE89_06455 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FDE89_06460 PF02219 Methylenetetrahydrofolate reductase FDE89_06465 PF04452 RNA methyltransferase FDE89_06470 PF00563 EAL domain FDE89_06470 PF03707 Bacterial signalling protein N terminal repeat FDE89_06470 PF00990 Diguanylate cyclase, GGDEF domain FDE89_06475 PF01515 Phosphate acetyl/butaryl transferase FDE89_06475 PF03949 Malic enzyme, NAD binding domain FDE89_06475 PF00390 Malic enzyme, N-terminal domain FDE89_06480 PF01743 Poly A polymerase head domain FDE89_06480 PF12627 Probable RNA and SrmB- binding site of polymerase A FDE89_06485 PF13180 PDZ domain FDE89_06490 PF01784 NIF3 (NGG1p interacting factor 3) FDE89_06495 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FDE89_06495 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FDE89_06530 PF01040 UbiA prenyltransferase family FDE89_06535 PF04345 Chorismate lyase FDE89_06545 PF00854 POT family FDE89_06555 PF00117 Glutamine amidotransferase class-I FDE89_06565 PF07715 TonB-dependent Receptor Plug Domain FDE89_06565 PF00593 TonB dependent receptor FDE89_06570 PF02885 Glycosyl transferase family, helical bundle domain FDE89_06570 PF00591 Glycosyl transferase family, a/b domain FDE89_06590 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FDE89_06590 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FDE89_06595 PF00111 2Fe-2S iron-sulfur cluster binding domain FDE89_06595 PF01799 [2Fe-2S] binding domain FDE89_06630 PF05675 Protein of unknown function (DUF817) FDE89_06635 PF01208 Uroporphyrinogen decarboxylase (URO-D) FDE89_06645 PF00425 chorismate binding enzyme FDE89_06655 PF00975 Thioesterase domain FDE89_06660 PF00664 ABC transporter transmembrane region FDE89_06660 PF00005 ABC transporter FDE89_06665 PF00664 ABC transporter transmembrane region FDE89_06665 PF00005 ABC transporter FDE89_06675 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDE89_06680 PF00550 Phosphopantetheine attachment site FDE89_06680 PF00857 Isochorismatase family FDE89_06685 PF13193 AMP-binding enzyme C-terminal domain FDE89_06685 PF00501 AMP-binding enzyme FDE89_06690 PF00668 Condensation domain FDE89_06690 PF00550 Phosphopantetheine attachment site FDE89_06690 PF00501 AMP-binding enzyme FDE89_06695 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FDE89_06700 PF00593 TonB dependent receptor FDE89_06700 PF07715 TonB-dependent Receptor Plug Domain FDE89_06705 PF01497 Periplasmic binding protein FDE89_06710 PF00005 ABC transporter FDE89_06715 PF01032 FecCD transport family FDE89_06720 PF01032 FecCD transport family FDE89_06725 PF00975 Thioesterase domain FDE89_06725 PF00550 Phosphopantetheine attachment site FDE89_06725 PF00668 Condensation domain FDE89_06725 PF13193 AMP-binding enzyme C-terminal domain FDE89_06725 PF00501 AMP-binding enzyme FDE89_06730 PF00501 AMP-binding enzyme FDE89_06730 PF00668 Condensation domain FDE89_06730 PF00550 Phosphopantetheine attachment site FDE89_06730 PF13193 AMP-binding enzyme C-terminal domain FDE89_06740 PF13309 HTH domain FDE89_06740 PF08348 YheO-like PAS domain FDE89_06750 PF17954 Quercetinase C-terminal cupin domain FDE89_06750 PF02678 Pirin FDE89_06770 PF00440 Bacterial regulatory proteins, tetR family FDE89_06775 PF08990 Erythronolide synthase docking FDE89_06775 PF09277 Erythronolide synthase, docking FDE89_06775 PF16197 Ketoacyl-synthetase C-terminal extension FDE89_06775 PF00109 Beta-ketoacyl synthase, N-terminal domain FDE89_06775 PF02801 Beta-ketoacyl synthase, C-terminal domain FDE89_06775 PF08659 KR domain FDE89_06775 PF00550 Phosphopantetheine attachment site FDE89_06775 PF14765 Polyketide synthase dehydratase FDE89_06775 PF00698 Acyl transferase domain FDE89_06775 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_06780 PF13378 Enolase C-terminal domain-like FDE89_06780 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDE89_06785 PF00083 Sugar (and other) transporter FDE89_06790 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FDE89_06830 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDE89_06830 PF01266 FAD dependent oxidoreductase FDE89_06835 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_06835 PF18113 Rubredoxin binding C-terminal domain FDE89_06845 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDE89_06845 PF00355 Rieske [2Fe-2S] domain FDE89_06850 PF02028 BCCT, betaine/carnitine/choline family transporter FDE89_06855 PF02028 BCCT, betaine/carnitine/choline family transporter FDE89_06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_06860 PF03466 LysR substrate binding domain FDE89_06865 PF00324 Amino acid permease FDE89_06870 PF00171 Aldehyde dehydrogenase family FDE89_06885 PF13556 PucR C-terminal helix-turn-helix domain FDE89_06885 PF06018 CodY GAF-like domain FDE89_06885 PF17853 GGDEF-like domain FDE89_06920 PF04328 Selenoprotein, putative FDE89_06925 PF02554 Carbon starvation protein CstA FDE89_06925 PF13722 5TM C-terminal transporter carbon starvation CstA FDE89_06930 PF01132 Elongation factor P (EF-P) OB domain FDE89_06930 PF08207 Elongation factor P (EF-P) KOW-like domain FDE89_06930 PF09285 Elongation factor P, C-terminal FDE89_06935 PF04055 Radical SAM superfamily FDE89_06950 PF01197 Ribosomal protein L31 FDE89_06955 PF13593 SBF-like CPA transporter family (DUF4137) FDE89_06960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDE89_06965 PF07690 Major Facilitator Superfamily FDE89_06970 PF13654 AAA domain FDE89_06970 PF05362 Lon protease (S16) C-terminal proteolytic domain FDE89_06975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_06975 PF03466 LysR substrate binding domain FDE89_06980 PF01551 Peptidase family M23 FDE89_06980 PF01476 LysM domain FDE89_06985 PF01975 Survival protein SurE FDE89_07000 PF00768 D-alanyl-D-alanine carboxypeptidase FDE89_07000 PF07943 Penicillin-binding protein 5, C-terminal domain FDE89_07005 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_07010 PF00293 NUDIX domain FDE89_07010 PF13344 Haloacid dehalogenase-like hydrolase FDE89_07020 PF04356 Protein of unknown function (DUF489) FDE89_07025 PF08328 Adenylosuccinate lyase C-terminal FDE89_07025 PF00206 Lyase FDE89_07045 PF01343 Peptidase family S49 FDE89_07045 PF08496 Peptidase family S49 N-terminal FDE89_07050 PF00005 ABC transporter FDE89_07055 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_07060 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_07065 PF12849 PBP superfamily domain FDE89_07070 PF00324 Amino acid permease FDE89_07075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDE89_07075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDE89_07075 PF00205 Thiamine pyrophosphate enzyme, central domain FDE89_07080 PF01037 Lrp/AsnC ligand binding domain FDE89_07085 PF00171 Aldehyde dehydrogenase family FDE89_07090 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDE89_07095 PF00202 Aminotransferase class-III FDE89_07105 PF00440 Bacterial regulatory proteins, tetR family FDE89_07105 PF17754 MftR C-terminal domain FDE89_07115 PF00487 Fatty acid desaturase FDE89_07120 PF00970 Oxidoreductase FAD-binding domain FDE89_07120 PF00111 2Fe-2S iron-sulfur cluster binding domain FDE89_07120 PF00175 Oxidoreductase NAD-binding domain FDE89_07125 PF00440 Bacterial regulatory proteins, tetR family FDE89_07135 PF00271 Helicase conserved C-terminal domain FDE89_07135 PF18337 RapA N-terminal Tudor like domain FDE89_07135 PF12137 RNA polymerase recycling family C-terminal FDE89_07135 PF00176 SNF2 family N-terminal domain FDE89_07135 PF18339 RapA N-terminal Tudor like domain 1 FDE89_07140 PF00849 RNA pseudouridylate synthase FDE89_07150 PF00202 Aminotransferase class-III FDE89_07155 PF02581 Thiamine monophosphate synthase FDE89_07180 PF00675 Insulinase (Peptidase family M16) FDE89_07180 PF05193 Peptidase M16 inactive domain FDE89_07185 PF02567 Phenazine biosynthesis-like protein FDE89_07195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_07195 PF03466 LysR substrate binding domain FDE89_07200 PF06779 Uncharacterised MFS-type transporter YbfB FDE89_07215 PF00180 Isocitrate/isopropylmalate dehydrogenase FDE89_07220 PF00849 RNA pseudouridylate synthase FDE89_07225 PF03971 Monomeric isocitrate dehydrogenase FDE89_07235 PF07943 Penicillin-binding protein 5, C-terminal domain FDE89_07235 PF00768 D-alanyl-D-alanine carboxypeptidase FDE89_07240 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_07245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDE89_07250 PF00875 DNA photolyase FDE89_07250 PF03441 FAD binding domain of DNA photolyase FDE89_07280 PF02350 UDP-N-acetylglucosamine 2-epimerase FDE89_07295 PF03060 Nitronate monooxygenase FDE89_07305 PF07759 Protein of unknown function (DUF1615) FDE89_07315 PF00696 Amino acid kinase family FDE89_07315 PF01472 PUA domain FDE89_07320 PF01018 GTP1/OBG FDE89_07320 PF01926 50S ribosome-binding GTPase FDE89_07335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDE89_07335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDE89_07340 PF00892 EamA-like transporter family FDE89_07350 PF12344 Ultra-violet resistance protein B FDE89_07350 PF00271 Helicase conserved C-terminal domain FDE89_07350 PF17757 UvrB interaction domain FDE89_07350 PF04851 Type III restriction enzyme, res subunit FDE89_07350 PF02151 UvrB/uvrC motif FDE89_07360 PF00990 Diguanylate cyclase, GGDEF domain FDE89_07360 PF17151 Periplasmic sensor domain FDE89_07400 PF00106 short chain dehydrogenase FDE89_07405 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FDE89_07410 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FDE89_07415 PF02565 Recombination protein O C terminal FDE89_07415 PF11967 Recombination protein O N terminal FDE89_07425 PF07650 KH domain FDE89_07425 PF01926 50S ribosome-binding GTPase FDE89_07430 PF14622 Ribonuclease-III-like FDE89_07430 PF00035 Double-stranded RNA binding motif FDE89_07440 PF10502 Signal peptidase, peptidase S26 FDE89_07445 PF06421 GTP-binding protein LepA C-terminus FDE89_07445 PF03144 Elongation factor Tu domain 2 FDE89_07445 PF00009 Elongation factor Tu GTP binding domain FDE89_07445 PF00679 Elongation factor G C-terminus FDE89_07455 PF13180 PDZ domain FDE89_07460 PF00890 FAD binding domain FDE89_07460 PF02910 Fumarate reductase flavoprotein C-term FDE89_07470 PF02223 Thymidylate kinase FDE89_07475 PF02618 YceG-like family FDE89_07480 PF01063 Amino-transferase class IV FDE89_07495 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_07500 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_07505 PF00005 ABC transporter FDE89_07505 PF12857 TOBE-like domain FDE89_07510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_07510 PF03466 LysR substrate binding domain FDE89_07520 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_07520 PF14602 Hexapeptide repeat of succinyl-transferase FDE89_07520 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FDE89_07530 PF06508 Queuosine biosynthesis protein QueC FDE89_07545 PF00578 AhpC/TSA family FDE89_07555 PF01467 Cytidylyltransferase-like FDE89_07555 PF00293 NUDIX domain FDE89_07560 PF00378 Enoyl-CoA hydratase/isomerase FDE89_07565 PF01784 NIF3 (NGG1p interacting factor 3) FDE89_07570 PF07690 Major Facilitator Superfamily FDE89_07575 PF02769 AIR synthase related protein, C-terminal domain FDE89_07575 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FDE89_07575 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FDE89_07580 PF01966 HD domain FDE89_07585 PF01330 RuvA N terminal domain FDE89_07585 PF07499 RuvA, C-terminal domain FDE89_07590 PF05496 Holliday junction DNA helicase RuvB P-loop domain FDE89_07590 PF17864 RuvB AAA lid domain FDE89_07590 PF05491 RuvB C-terminal winged helix domain FDE89_07595 PF07687 Peptidase dimerisation domain FDE89_07595 PF01546 Peptidase family M20/M25/M40 FDE89_07600 PF03061 Thioesterase superfamily FDE89_07605 PF01618 MotA/TolQ/ExbB proton channel family FDE89_07610 PF02472 Biopolymer transport protein ExbD/TolR FDE89_07620 PF04052 TolB amino-terminal domain FDE89_07620 PF07676 WD40-like Beta Propeller Repeat FDE89_07625 PF00691 OmpA family FDE89_07635 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FDE89_07640 PF00588 SpoU rRNA Methylase family FDE89_07640 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDE89_07670 PF00308 Bacterial dnaA protein FDE89_07670 PF08299 Bacterial dnaA protein helix-turn-helix FDE89_07670 PF11638 DnaA N-terminal domain FDE89_07675 PF01594 AI-2E family transporter FDE89_07680 PF02769 AIR synthase related protein, C-terminal domain FDE89_07680 PF00586 AIR synthase related protein, N-terminal domain FDE89_07685 PF00551 Formyl transferase FDE89_07690 PF12697 Alpha/beta hydrolase family FDE89_07695 PF01343 Peptidase family S49 FDE89_07695 PF06965 Na+/H+ antiporter 1 FDE89_07705 PF03772 Competence protein FDE89_07705 PF00753 Metallo-beta-lactamase superfamily FDE89_07705 PF13567 Domain of unknown function (DUF4131) FDE89_07710 PF00005 ABC transporter FDE89_07715 PF02687 FtsX-like permease family FDE89_07715 PF12704 MacB-like periplasmic core domain FDE89_07725 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FDE89_07735 PF00266 Aminotransferase class-V FDE89_07745 PF13533 Biotin-lipoyl like FDE89_07765 PF00535 Glycosyl transferase family 2 FDE89_07780 PF00521 DNA gyrase/topoisomerase IV, subunit A FDE89_07780 PF03989 DNA gyrase C-terminal domain, beta-propeller FDE89_07785 PF01012 Electron transfer flavoprotein domain FDE89_07785 PF00766 Electron transfer flavoprotein FAD-binding domain FDE89_07790 PF01012 Electron transfer flavoprotein domain FDE89_07795 PF02899 Phage integrase, N-terminal SAM-like domain FDE89_07795 PF00589 Phage integrase family FDE89_07800 PF01810 LysE type translocator FDE89_07805 PF01678 Diaminopimelate epimerase FDE89_07810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FDE89_07810 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FDE89_07820 PF00324 Amino acid permease FDE89_07825 PF18073 Rubredoxin metal binding domain FDE89_07835 PF00152 tRNA synthetases class II (D, K and N) FDE89_07840 PF11890 Domain of unknown function (DUF3410) FDE89_07840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDE89_07840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDE89_07845 PF06803 Protein of unknown function (DUF1232) FDE89_07850 PF02634 FdhD/NarQ family FDE89_07855 PF00384 Molybdopterin oxidoreductase FDE89_07860 PF02595 Glycerate kinase family FDE89_07875 PF00881 Nitroreductase family FDE89_07900 PF00501 AMP-binding enzyme FDE89_07900 PF00668 Condensation domain FDE89_07900 PF00550 Phosphopantetheine attachment site FDE89_07900 PF00975 Thioesterase domain FDE89_07900 PF13193 AMP-binding enzyme C-terminal domain FDE89_07915 PF03449 Transcription elongation factor, N-terminal FDE89_07915 PF01272 Transcription elongation factor, GreA/GreB, C-term FDE89_07920 PF01464 Transglycosylase SLT domain FDE89_07920 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDE89_07930 PF01171 PP-loop family FDE89_07940 PF01464 Transglycosylase SLT domain FDE89_07945 PF01435 Peptidase family M48 FDE89_07955 PF00873 AcrB/AcrD/AcrF family FDE89_07960 PF03009 Glycerophosphoryl diester phosphodiesterase family FDE89_07970 PF01219 Prokaryotic diacylglycerol kinase FDE89_07975 PF00118 TCP-1/cpn60 chaperonin family FDE89_07980 PF00166 Chaperonin 10 Kd subunit FDE89_07990 PF00149 Calcineurin-like phosphoesterase FDE89_07995 PF00781 Diacylglycerol kinase catalytic domain FDE89_08000 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FDE89_08000 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FDE89_08005 PF01266 FAD dependent oxidoreductase FDE89_08005 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FDE89_08010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FDE89_08010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDE89_08015 PF00083 Sugar (and other) transporter FDE89_08030 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FDE89_08030 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FDE89_08045 PF16655 PhoD-like phosphatase, N-terminal domain FDE89_08045 PF09423 PhoD-like phosphatase FDE89_08065 PF00809 Pterin binding enzyme FDE89_08070 PF01434 Peptidase family M41 FDE89_08070 PF06480 FtsH Extracellular FDE89_08070 PF17862 AAA+ lid domain FDE89_08070 PF00004 ATPase family associated with various cellular activities (AAA) FDE89_08075 PF01728 FtsJ-like methyltransferase FDE89_08080 PF01985 CRS1 / YhbY (CRM) domain FDE89_08095 PF00117 Glutamine amidotransferase class-I FDE89_08095 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FDE89_08100 PF02142 MGS-like domain FDE89_08100 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FDE89_08100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDE89_08105 PF01272 Transcription elongation factor, GreA/GreB, C-term FDE89_08105 PF03449 Transcription elongation factor, N-terminal FDE89_08110 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_08115 PF00582 Universal stress protein family FDE89_08120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDE89_08130 PF09587 Bacterial capsule synthesis protein PGA_cap FDE89_08180 PF00999 Sodium/hydrogen exchanger family FDE89_08185 PF04228 Putative neutral zinc metallopeptidase FDE89_08190 PF05661 Protein of unknown function (DUF808) FDE89_08195 PF00579 tRNA synthetases class I (W and Y) FDE89_08200 PF00549 CoA-ligase FDE89_08200 PF02629 CoA binding domain FDE89_08205 PF00549 CoA-ligase FDE89_08205 PF08442 ATP-grasp domain FDE89_08210 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_08210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDE89_08215 PF02817 e3 binding domain FDE89_08215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDE89_08215 PF00364 Biotin-requiring enzyme FDE89_08220 PF02779 Transketolase, pyrimidine binding domain FDE89_08220 PF16078 2-oxoglutarate dehydrogenase N-terminus FDE89_08220 PF16870 2-oxoglutarate dehydrogenase C-terminal FDE89_08220 PF00676 Dehydrogenase E1 component FDE89_08235 PF13085 2Fe-2S iron-sulfur cluster binding domain FDE89_08245 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDE89_08250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDE89_08255 PF00285 Citrate synthase, C-terminal domain FDE89_08285 PF04545 Sigma-70, region 4 FDE89_08285 PF03979 Sigma-70 factor, region 1.1 FDE89_08285 PF00140 Sigma-70 factor, region 1.2 FDE89_08285 PF04542 Sigma-70 region 2 FDE89_08285 PF04539 Sigma-70 region 3 FDE89_08285 PF04546 Sigma-70, non-essential region FDE89_08290 PF04359 Protein of unknown function (DUF493) FDE89_08295 PF03099 Biotin/lipoate A/B protein ligase family FDE89_08305 PF00465 Iron-containing alcohol dehydrogenase FDE89_08310 PF13520 Amino acid permease FDE89_08315 PF03358 NADPH-dependent FMN reductase FDE89_08325 PF00588 SpoU rRNA Methylase family FDE89_08330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDE89_08330 PF14824 Sirohaem biosynthesis protein central FDE89_08330 PF10414 Sirohaem synthase dimerisation region FDE89_08335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDE89_08335 PF02403 Seryl-tRNA synthetase N-terminal domain FDE89_08345 PF03548 Outer membrane lipoprotein carrier protein LolA FDE89_08350 PF01016 Ribosomal L27 protein FDE89_08355 PF00829 Ribosomal prokaryotic L21 protein FDE89_08365 PF00348 Polyprenyl synthetase FDE89_08375 PF01569 PAP2 superfamily FDE89_08380 PF00529 HlyD membrane-fusion protein of T1SS FDE89_08380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDE89_08385 PF00873 AcrB/AcrD/AcrF family FDE89_08390 PF02321 Outer membrane efflux protein FDE89_08395 PF01906 Putative heavy-metal-binding FDE89_08400 PF01906 Putative heavy-metal-binding FDE89_08420 PF10458 Valyl tRNA synthetase tRNA binding arm FDE89_08420 PF00133 tRNA synthetases class I (I, L, M and V) FDE89_08420 PF08264 Anticodon-binding domain of tRNA FDE89_08440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_08440 PF03466 LysR substrate binding domain FDE89_08450 PF00909 Ammonium Transporter Family FDE89_08460 PF00512 His Kinase A (phospho-acceptor) domain FDE89_08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_08460 PF08521 Two-component sensor kinase N-terminal FDE89_08465 PF00486 Transcriptional regulatory protein, C terminal FDE89_08465 PF00072 Response regulator receiver domain FDE89_08490 PF01734 Patatin-like phospholipase FDE89_08500 PF01145 SPFH domain / Band 7 family FDE89_08505 PF04237 YjbR FDE89_08510 PF00348 Polyprenyl synthetase FDE89_08515 PF04303 PrpF protein FDE89_08520 PF00324 Amino acid permease FDE89_08530 PF01965 DJ-1/PfpI family FDE89_08535 PF02801 Beta-ketoacyl synthase, C-terminal domain FDE89_08535 PF08659 KR domain FDE89_08535 PF09277 Erythronolide synthase, docking FDE89_08535 PF08990 Erythronolide synthase docking FDE89_08535 PF00550 Phosphopantetheine attachment site FDE89_08535 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_08535 PF00698 Acyl transferase domain FDE89_08535 PF00109 Beta-ketoacyl synthase, N-terminal domain FDE89_08535 PF16197 Ketoacyl-synthetase C-terminal extension FDE89_08535 PF14765 Polyketide synthase dehydratase FDE89_08540 PF06719 AraC-type transcriptional regulator N-terminus FDE89_08540 PF12833 Helix-turn-helix domain FDE89_08545 PF02673 Bacitracin resistance protein BacA FDE89_08565 PF02525 Flavodoxin-like fold FDE89_08580 PF01507 Phosphoadenosine phosphosulfate reductase family FDE89_08585 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FDE89_08585 PF06974 Protein of unknown function (DUF1298) FDE89_08595 PF00575 S1 RNA binding domain FDE89_08595 PF10150 Ribonuclease E/G family FDE89_08600 PF02545 Maf-like protein FDE89_08605 PF04093 rod shape-determining protein MreD FDE89_08610 PF04085 rod shape-determining protein MreC FDE89_08620 PF02686 Glu-tRNAGln amidotransferase C subunit FDE89_08625 PF01425 Amidase FDE89_08630 PF02637 GatB domain FDE89_08630 PF02934 GatB/GatE catalytic domain FDE89_08670 PF05992 SbmA/BacA-like family FDE89_08675 PF13291 ACT domain FDE89_08675 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_08680 PF01734 Patatin-like phospholipase FDE89_08685 PF01235 Sodium:alanine symporter family FDE89_08700 PF00881 Nitroreductase family FDE89_08705 PF07690 Major Facilitator Superfamily FDE89_08710 PF12805 FUSC-like inner membrane protein yccS FDE89_08720 PF00667 FAD binding domain FDE89_08720 PF00258 Flavodoxin FDE89_08720 PF00175 Oxidoreductase NAD-binding domain FDE89_08760 PF03734 L,D-transpeptidase catalytic domain FDE89_08760 PF17969 L,D-transpeptidase C-terminal domain FDE89_08765 PF04304 Protein of unknown function (DUF454) FDE89_08775 PF08085 Entericidin EcnA/B family FDE89_08780 PF01546 Peptidase family M20/M25/M40 FDE89_08780 PF07687 Peptidase dimerisation domain FDE89_08790 PF01584 CheW-like domain FDE89_08790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_08790 PF01627 Hpt domain FDE89_08790 PF00072 Response regulator receiver domain FDE89_08795 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FDE89_08795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDE89_08800 PF01584 CheW-like domain FDE89_08805 PF00072 Response regulator receiver domain FDE89_08810 PF00072 Response regulator receiver domain FDE89_08830 PF03129 Anticodon binding domain FDE89_08830 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDE89_08830 PF04073 Aminoacyl-tRNA editing domain FDE89_08835 PF07411 Domain of unknown function (DUF1508) FDE89_08840 PF08274 PhnA Zinc-Ribbon FDE89_08840 PF03831 PhnA domain FDE89_08845 PF04343 Protein of unknown function, DUF488 FDE89_08855 PF01571 Aminomethyltransferase folate-binding domain FDE89_08860 PF13098 Thioredoxin-like domain FDE89_08860 PF10411 Disulfide bond isomerase protein N-terminus FDE89_08875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDE89_08890 PF07715 TonB-dependent Receptor Plug Domain FDE89_08890 PF00593 TonB dependent receptor FDE89_08895 PF02245 Methylpurine-DNA glycosylase (MPG) FDE89_08900 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FDE89_08900 PF06827 Zinc finger found in FPG and IleRS FDE89_08900 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FDE89_08915 PF01741 Large-conductance mechanosensitive channel, MscL FDE89_08925 PF00860 Permease family FDE89_08930 PF05175 Methyltransferase small domain FDE89_08930 PF08468 Methyltransferase small domain N-terminal FDE89_08935 PF00324 Amino acid permease FDE89_08940 PF01139 tRNA-splicing ligase RtcB FDE89_08945 PF00691 OmpA family FDE89_08945 PF13505 Outer membrane protein beta-barrel domain FDE89_08955 PF00108 Thiolase, N-terminal domain FDE89_08955 PF02803 Thiolase, C-terminal domain FDE89_08965 PF00893 Small Multidrug Resistance protein FDE89_08975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDE89_08975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDE89_08980 PF01011 PQQ enzyme repeat FDE89_08985 PF04966 Carbohydrate-selective porin, OprB family FDE89_08990 PF02515 CoA-transferase family III FDE89_08995 PF02311 AraC-like ligand binding domain FDE89_08995 PF12833 Helix-turn-helix domain FDE89_09000 PF02803 Thiolase, C-terminal domain FDE89_09000 PF00108 Thiolase, N-terminal domain FDE89_09005 PF00378 Enoyl-CoA hydratase/isomerase FDE89_09005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDE89_09005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDE89_09030 PF03006 Haemolysin-III related FDE89_09035 PF07690 Major Facilitator Superfamily FDE89_09035 PF00083 Sugar (and other) transporter FDE89_09045 PF02810 SEC-C motif FDE89_09045 PF07517 SecA DEAD-like domain FDE89_09045 PF01043 SecA preprotein cross-linking domain FDE89_09045 PF07516 SecA Wing and Scaffold domain FDE89_09050 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDE89_09050 PF00578 AhpC/TSA family FDE89_09055 PF00753 Metallo-beta-lactamase superfamily FDE89_09070 PF08245 Mur ligase middle domain FDE89_09070 PF02875 Mur ligase family, glutamate ligase domain FDE89_09075 PF01039 Carboxyl transferase domain FDE89_09080 PF00290 Tryptophan synthase alpha chain FDE89_09105 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_09110 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FDE89_09115 PF00593 TonB dependent receptor FDE89_09115 PF07715 TonB-dependent Receptor Plug Domain FDE89_09120 PF01923 Cobalamin adenosyltransferase FDE89_09140 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FDE89_09145 PF00072 Response regulator receiver domain FDE89_09145 PF00486 Transcriptional regulatory protein, C terminal FDE89_09150 PF00672 HAMP domain FDE89_09150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_09150 PF00512 His Kinase A (phospho-acceptor) domain FDE89_09160 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDE89_09160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_09160 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_09160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_09165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_09165 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_09165 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDE89_09165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_09170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_09170 PF03466 LysR substrate binding domain FDE89_09175 PF02798 Glutathione S-transferase, N-terminal domain FDE89_09175 PF00043 Glutathione S-transferase, C-terminal domain FDE89_09180 PF06146 Phosphate-starvation-inducible E FDE89_09200 PF07715 TonB-dependent Receptor Plug Domain FDE89_09200 PF00593 TonB dependent receptor FDE89_09210 PF02938 GAD domain FDE89_09210 PF00152 tRNA synthetases class II (D, K and N) FDE89_09210 PF01336 OB-fold nucleic acid binding domain FDE89_09215 PF17102 Stealth protein CR3, conserved region 3 FDE89_09215 PF11380 Stealth protein CR2, conserved region 2 FDE89_09215 PF17101 Stealth protein CR1, conserved region 1 FDE89_09240 PF13439 Glycosyltransferase Family 4 FDE89_09240 PF00534 Glycosyl transferases group 1 FDE89_09245 PF00535 Glycosyl transferase family 2 FDE89_09250 PF01522 Polysaccharide deacetylase FDE89_09265 PF01063 Amino-transferase class IV FDE89_09270 PF03710 Glutamate-ammonia ligase adenylyltransferase FDE89_09270 PF08335 GlnD PII-uridylyltransferase FDE89_09275 PF00512 His Kinase A (phospho-acceptor) domain FDE89_09275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_09275 PF07689 KaiB domain FDE89_09285 PF02547 Queuosine biosynthesis protein FDE89_09300 PF01702 Queuine tRNA-ribosyltransferase FDE89_09305 PF02699 Preprotein translocase subunit FDE89_09310 PF02355 Protein export membrane protein FDE89_09310 PF07549 SecD/SecF GG Motif FDE89_09310 PF13721 SecD export protein N-terminal TM region FDE89_09315 PF07549 SecD/SecF GG Motif FDE89_09315 PF02355 Protein export membrane protein FDE89_09320 PF04127 DNA / pantothenate metabolism flavoprotein FDE89_09320 PF02441 Flavoprotein FDE89_09325 PF04002 RadC-like JAB domain FDE89_09330 PF01062 Bestrophin, RFP-TM, chloride channel FDE89_09335 PF02811 PHP domain FDE89_09340 PF04279 Intracellular septation protein A FDE89_09345 PF03795 YCII-related domain FDE89_09355 PF01266 FAD dependent oxidoreductase FDE89_09355 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDE89_09365 PF04461 Protein of unknown function (DUF520) FDE89_09375 PF03061 Thioesterase superfamily FDE89_09380 PF00085 Thioredoxin FDE89_09385 PF00561 alpha/beta hydrolase fold FDE89_09390 PF00753 Metallo-beta-lactamase superfamily FDE89_09390 PF04273 Putative phosphatase (DUF442) FDE89_09400 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_09400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDE89_09435 PF00990 Diguanylate cyclase, GGDEF domain FDE89_09435 PF17152 Periplasmic sensor domain FDE89_09440 PF00691 OmpA family FDE89_09440 PF01389 OmpA-like transmembrane domain FDE89_09445 PF10518 TAT (twin-arginine translocation) pathway signal sequence FDE89_09445 PF00149 Calcineurin-like phosphoesterase FDE89_09450 PF13091 PLD-like domain FDE89_09460 PF01926 50S ribosome-binding GTPase FDE89_09460 PF16360 GTP-binding GTPase Middle Region FDE89_09460 PF13167 GTP-binding GTPase N-terminal FDE89_09480 PF00149 Calcineurin-like phosphoesterase FDE89_09485 PF00398 Ribosomal RNA adenine dimethylase FDE89_09490 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FDE89_09495 PF00572 Ribosomal protein L13 FDE89_09500 PF00380 Ribosomal protein S9/S16 FDE89_09505 PF13417 Glutathione S-transferase, N-terminal domain FDE89_09505 PF00043 Glutathione S-transferase, C-terminal domain FDE89_09510 PF04386 Stringent starvation protein B FDE89_09520 PF02785 Biotin carboxylase C-terminal domain FDE89_09520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDE89_09520 PF00289 Biotin carboxylase, N-terminal domain FDE89_09520 PF00364 Biotin-requiring enzyme FDE89_09530 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_09530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_09530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_09535 PF01039 Carboxyl transferase domain FDE89_09550 PF00440 Bacterial regulatory proteins, tetR family FDE89_09550 PF17932 Tetracyclin repressor-like, C-terminal domain FDE89_09555 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_09555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_09555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_09595 PF01066 CDP-alcohol phosphatidyltransferase FDE89_09600 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FDE89_09620 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FDE89_09620 PF00056 lactate/malate dehydrogenase, NAD binding domain FDE89_09630 PF10145 Phage-related minor tail protein FDE89_09630 PF01551 Peptidase family M23 FDE89_09630 PF01464 Transglycosylase SLT domain FDE89_09635 PF04055 Radical SAM superfamily FDE89_09635 PF00919 Uncharacterized protein family UPF0004 FDE89_09635 PF01938 TRAM domain FDE89_09670 PF03358 NADPH-dependent FMN reductase FDE89_09680 PF00892 EamA-like transporter family FDE89_09685 PF12833 Helix-turn-helix domain FDE89_09690 PF01557 Fumarylacetoacetate (FAA) hydrolase family FDE89_09735 PF17876 Cold shock domain FDE89_09735 PF08461 Ribonuclease R winged-helix domain FDE89_09735 PF08206 Ribonuclease B OB domain FDE89_09735 PF00773 RNB domain FDE89_09735 PF00575 S1 RNA binding domain FDE89_09740 PF01432 Peptidase family M3 FDE89_09745 PF09526 Probable metal-binding protein (DUF2387) FDE89_09775 PF03937 Flavinator of succinate dehydrogenase FDE89_09780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_09780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_09780 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_09785 PF00743 Flavin-binding monooxygenase-like FDE89_09790 PF01196 Ribosomal protein L17 FDE89_09795 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FDE89_09795 PF01000 RNA polymerase Rpb3/RpoA insert domain FDE89_09795 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FDE89_09800 PF00163 Ribosomal protein S4/S9 N-terminal domain FDE89_09800 PF01479 S4 domain FDE89_09805 PF00411 Ribosomal protein S11 FDE89_09810 PF00416 Ribosomal protein S13/S18 FDE89_09815 PF00444 Ribosomal protein L36 FDE89_09820 PF00344 SecY translocase FDE89_09825 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FDE89_09830 PF00327 Ribosomal protein L30p/L7e FDE89_09835 PF03719 Ribosomal protein S5, C-terminal domain FDE89_09835 PF00333 Ribosomal protein S5, N-terminal domain FDE89_09840 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FDE89_09845 PF00347 Ribosomal protein L6 FDE89_09850 PF00410 Ribosomal protein S8 FDE89_09855 PF00253 Ribosomal protein S14p/S29e FDE89_09860 PF00281 Ribosomal protein L5 FDE89_09860 PF00673 ribosomal L5P family C-terminus FDE89_09865 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FDE89_09865 PF00467 KOW motif FDE89_09870 PF00238 Ribosomal protein L14p/L23e FDE89_09875 PF00366 Ribosomal protein S17 FDE89_09880 PF00831 Ribosomal L29 protein FDE89_09885 PF00252 Ribosomal protein L16p/L10e FDE89_09890 PF07650 KH domain FDE89_09890 PF00189 Ribosomal protein S3, C-terminal domain FDE89_09895 PF00237 Ribosomal protein L22p/L17e FDE89_09900 PF00203 Ribosomal protein S19 FDE89_09905 PF03947 Ribosomal Proteins L2, C-terminal domain FDE89_09905 PF00181 Ribosomal Proteins L2, RNA binding domain FDE89_09910 PF00276 Ribosomal protein L23 FDE89_09915 PF00573 Ribosomal protein L4/L1 family FDE89_09920 PF00297 Ribosomal protein L3 FDE89_09925 PF00338 Ribosomal protein S10p/S20e FDE89_09930 PF00117 Glutamine amidotransferase class-I FDE89_09935 PF01053 Cys/Met metabolism PLP-dependent enzyme FDE89_09940 PF05872 Bacterial protein of unknown function (DUF853) FDE89_09945 PF00175 Oxidoreductase NAD-binding domain FDE89_09945 PF00970 Oxidoreductase FAD-binding domain FDE89_09945 PF00042 Globin FDE89_09950 PF02082 Transcriptional regulator FDE89_09955 PF01926 50S ribosome-binding GTPase FDE89_09965 PF00375 Sodium:dicarboxylate symporter family FDE89_09975 PF01553 Acyltransferase FDE89_09990 PF17191 RecG wedge domain FDE89_09990 PF00271 Helicase conserved C-terminal domain FDE89_09990 PF00270 DEAD/DEAH box helicase FDE89_10000 PF13737 Transposase DDE domain FDE89_10010 PF00293 NUDIX domain FDE89_10015 PF03641 Possible lysine decarboxylase FDE89_10020 PF01544 CorA-like Mg2+ transporter protein FDE89_10030 PF05494 MlaC protein FDE89_10040 PF02405 Permease MlaE FDE89_10045 PF00005 ABC transporter FDE89_10055 PF12343 Cold shock protein DEAD box A FDE89_10055 PF00271 Helicase conserved C-terminal domain FDE89_10055 PF00270 DEAD/DEAH box helicase FDE89_10055 PF03880 DbpA RNA binding domain FDE89_10060 PF00459 Inositol monophosphatase family FDE89_10065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FDE89_10065 PF02780 Transketolase, C-terminal domain FDE89_10065 PF02779 Transketolase, pyrimidine binding domain FDE89_10070 PF00925 GTP cyclohydrolase II FDE89_10075 PF01218 Coproporphyrinogen III oxidase FDE89_10080 PF08501 Shikimate dehydrogenase substrate binding domain FDE89_10080 PF01488 Shikimate / quinate 5-dehydrogenase FDE89_10080 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FDE89_10090 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDE89_10090 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_10090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_10090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_10100 PF04024 PspC domain FDE89_10105 PF00571 CBS domain FDE89_10130 PF02091 Glycyl-tRNA synthetase alpha subunit FDE89_10135 PF02092 Glycyl-tRNA synthetase beta subunit FDE89_10135 PF05746 DALR anticodon binding domain FDE89_10145 PF00892 EamA-like transporter family FDE89_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_10150 PF03466 LysR substrate binding domain FDE89_10180 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FDE89_10185 PF04996 Succinylarginine dihydrolase FDE89_10190 PF00171 Aldehyde dehydrogenase family FDE89_10195 PF04958 Arginine N-succinyltransferase beta subunit FDE89_10200 PF00202 Aminotransferase class-III FDE89_10205 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDE89_10205 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDE89_10210 PF00324 Amino acid permease FDE89_10240 PF13614 AAA domain FDE89_10245 PF01594 AI-2E family transporter FDE89_10255 PF12805 FUSC-like inner membrane protein yccS FDE89_10260 PF07690 Major Facilitator Superfamily FDE89_10270 PF02525 Flavodoxin-like fold FDE89_10275 PF03992 Antibiotic biosynthesis monooxygenase FDE89_10285 PF01565 FAD binding domain FDE89_10285 PF02913 FAD linked oxidases, C-terminal domain FDE89_10290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDE89_10290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDE89_10300 PF00892 EamA-like transporter family FDE89_10315 PF09157 Pseudouridine synthase II TruB, C-terminal FDE89_10315 PF01509 TruB family pseudouridylate synthase (N terminal domain) FDE89_10315 PF16198 tRNA pseudouridylate synthase B C-terminal domain FDE89_10320 PF03280 Proteobacterial lipase chaperone protein FDE89_10325 PF00561 alpha/beta hydrolase fold FDE89_10330 PF01245 Ribosomal protein L19 FDE89_10335 PF01746 tRNA (Guanine-1)-methyltransferase FDE89_10340 PF05239 PRC-barrel domain FDE89_10340 PF01782 RimM N-terminal domain FDE89_10385 PF02401 LytB protein FDE89_10390 PF00625 Guanylate kinase FDE89_10395 PF01192 RNA polymerase Rpb6 FDE89_10405 PF04607 Region found in RelA / SpoT proteins FDE89_10405 PF13291 ACT domain FDE89_10405 PF02824 TGS domain FDE89_10410 PF01042 Endoribonuclease L-PSP FDE89_10415 PF04324 BFD-like [2Fe-2S] binding domain FDE89_10420 PF00210 Ferritin-like domain FDE89_10425 PF15864 Protein glycosylation ligase FDE89_10425 PF04932 O-Antigen ligase FDE89_10425 PF11846 Virulence factor membrane-bound polymerase, C-terminal FDE89_10475 PF04536 TPM domain FDE89_10480 PF04011 LemA family FDE89_10490 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_10490 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FDE89_10495 PF00310 Glutamine amidotransferases class-II FDE89_10495 PF04898 Glutamate synthase central domain FDE89_10495 PF01493 GXGXG motif FDE89_10495 PF01645 Conserved region in glutamate synthase FDE89_10510 PF01202 Shikimate kinase FDE89_10515 PF03958 Bacterial type II/III secretion system short domain FDE89_10515 PF00263 Bacterial type II and III secretion system protein FDE89_10515 PF07660 Secretin and TonB N terminus short domain FDE89_10515 PF11741 AMIN domain FDE89_10540 PF17092 Penicillin-binding protein OB-like domain FDE89_10540 PF00905 Penicillin binding protein transpeptidase domain FDE89_10540 PF00912 Transglycosylase FDE89_10545 PF13847 Methyltransferase domain FDE89_10555 PF00953 Glycosyl transferase family 4 FDE89_10560 PF01225 Mur ligase family, catalytic domain FDE89_10560 PF08245 Mur ligase middle domain FDE89_10560 PF02875 Mur ligase family, glutamate ligase domain FDE89_10565 PF01225 Mur ligase family, catalytic domain FDE89_10565 PF02875 Mur ligase family, glutamate ligase domain FDE89_10565 PF08245 Mur ligase middle domain FDE89_10570 PF00905 Penicillin binding protein transpeptidase domain FDE89_10570 PF03717 Penicillin-binding Protein dimerisation domain FDE89_10580 PF01795 MraW methylase family FDE89_10595 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDE89_10610 PF00324 Amino acid permease FDE89_10640 PF01545 Cation efflux family FDE89_10645 PF00873 AcrB/AcrD/AcrF family FDE89_10670 PF04191 Phospholipid methyltransferase FDE89_10695 PF12848 ABC transporter FDE89_10695 PF00005 ABC transporter FDE89_10700 PF01053 Cys/Met metabolism PLP-dependent enzyme FDE89_10705 PF00106 short chain dehydrogenase FDE89_10710 PF00916 Sulfate permease family FDE89_10710 PF01740 STAS domain FDE89_10715 PF09371 Tex-like protein N-terminal domain FDE89_10715 PF00575 S1 RNA binding domain FDE89_10715 PF16921 Tex protein YqgF-like domain FDE89_10715 PF17674 HHH domain FDE89_10720 PF00072 Response regulator receiver domain FDE89_10720 PF00486 Transcriptional regulatory protein, C terminal FDE89_10725 PF00672 HAMP domain FDE89_10725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_10725 PF00512 His Kinase A (phospho-acceptor) domain FDE89_10735 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FDE89_10735 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FDE89_10740 PF00583 Acetyltransferase (GNAT) family FDE89_10760 PF00475 Imidazoleglycerol-phosphate dehydratase FDE89_10765 PF00117 Glutamine amidotransferase class-I FDE89_10780 PF00977 Histidine biosynthesis protein FDE89_10795 PF03992 Antibiotic biosynthesis monooxygenase FDE89_10810 PF01636 Phosphotransferase enzyme family FDE89_10815 PF00977 Histidine biosynthesis protein FDE89_10830 PF00230 Major intrinsic protein FDE89_10855 PF02705 K+ potassium transporter FDE89_10875 PF02525 Flavodoxin-like fold FDE89_10885 PF01638 HxlR-like helix-turn-helix FDE89_10920 PF12833 Helix-turn-helix domain FDE89_10920 PF02311 AraC-like ligand binding domain FDE89_10925 PF00248 Aldo/keto reductase family FDE89_10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_10945 PF03466 LysR substrate binding domain FDE89_10950 PF07690 Major Facilitator Superfamily FDE89_10970 PF01593 Flavin containing amine oxidoreductase FDE89_10975 PF02678 Pirin FDE89_10975 PF05726 Pirin C-terminal cupin domain FDE89_10980 PF00857 Isochorismatase family FDE89_10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_10990 PF00171 Aldehyde dehydrogenase family FDE89_10995 PF00202 Aminotransferase class-III FDE89_11000 PF00392 Bacterial regulatory proteins, gntR family FDE89_11000 PF00155 Aminotransferase class I and II FDE89_11005 PF00324 Amino acid permease FDE89_11015 PF03591 AzlC protein FDE89_11025 PF00436 Single-strand binding protein family FDE89_11030 PF07690 Major Facilitator Superfamily FDE89_11040 PF02581 Thiamine monophosphate synthase FDE89_11040 PF03070 TENA/THI-4/PQQC family FDE89_11040 PF08543 Phosphomethylpyrimidine kinase FDE89_11045 PF06942 GlpM protein FDE89_11055 PF00107 Zinc-binding dehydrogenase FDE89_11055 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_11060 PF16925 Tetracyclin repressor-like, C-terminal domain FDE89_11060 PF00440 Bacterial regulatory proteins, tetR family FDE89_11065 PF00005 ABC transporter FDE89_11065 PF17755 UvrA DNA-binding domain FDE89_11065 PF17760 UvrA interaction domain FDE89_11075 PF00990 Diguanylate cyclase, GGDEF domain FDE89_11075 PF17158 Membrane-associated sensor, integral membrane domain FDE89_11085 PF02028 BCCT, betaine/carnitine/choline family transporter FDE89_11095 PF00474 Sodium:solute symporter family FDE89_11100 PF04341 Protein of unknown function, DUF485 FDE89_11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_11105 PF00512 His Kinase A (phospho-acceptor) domain FDE89_11105 PF00072 Response regulator receiver domain FDE89_11105 PF01627 Hpt domain FDE89_11105 PF00672 HAMP domain FDE89_11115 PF00072 Response regulator receiver domain FDE89_11115 PF00196 Bacterial regulatory proteins, luxR family FDE89_11120 PF03358 NADPH-dependent FMN reductase FDE89_11125 PF00296 Luciferase-like monooxygenase FDE89_11130 PF00872 Transposase, Mutator family FDE89_11135 PF01037 Lrp/AsnC ligand binding domain FDE89_11140 PF00857 Isochorismatase family FDE89_11145 PF13193 AMP-binding enzyme C-terminal domain FDE89_11145 PF16177 Acetyl-coenzyme A synthetase N-terminus FDE89_11145 PF00501 AMP-binding enzyme FDE89_11155 PF00924 Mechanosensitive ion channel FDE89_11160 PF04452 RNA methyltransferase FDE89_11170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDE89_11190 PF01368 DHH family FDE89_11190 PF17768 RecJ OB domain FDE89_11190 PF02272 DHHA1 domain FDE89_11195 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FDE89_11195 PF01243 Pyridoxamine 5'-phosphate oxidase FDE89_11200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDE89_11200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDE89_11200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDE89_11200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDE89_11205 PF00571 CBS domain FDE89_11205 PF00478 IMP dehydrogenase / GMP reductase domain FDE89_11210 PF03692 Putative zinc- or iron-chelating domain FDE89_11215 PF00258 Flavodoxin FDE89_11215 PF01613 Flavin reductase like domain FDE89_11220 PF00593 TonB dependent receptor FDE89_11220 PF07715 TonB-dependent Receptor Plug Domain FDE89_11225 PF01169 Uncharacterized protein family UPF0016 FDE89_11235 PF00364 Biotin-requiring enzyme FDE89_11235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDE89_11235 PF02817 e3 binding domain FDE89_11240 PF00456 Transketolase, thiamine diphosphate binding domain FDE89_11240 PF17831 Pyruvate dehydrogenase E1 component middle domain FDE89_11245 PF01551 Peptidase family M23 FDE89_11255 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FDE89_11260 PF00091 Tubulin/FtsZ family, GTPase domain FDE89_11260 PF12327 FtsZ family, C-terminal domain FDE89_11265 PF02491 SHS2 domain inserted in FTSA FDE89_11270 PF03799 Cell division protein FtsQ FDE89_11270 PF08478 POTRA domain, FtsQ-type FDE89_11275 PF01820 D-ala D-ala ligase N-terminus FDE89_11275 PF07478 D-ala D-ala ligase C-terminus FDE89_11280 PF08245 Mur ligase middle domain FDE89_11280 PF02875 Mur ligase family, glutamate ligase domain FDE89_11280 PF01225 Mur ligase family, catalytic domain FDE89_11285 PF03033 Glycosyltransferase family 28 N-terminal domain FDE89_11285 PF04101 Glycosyltransferase family 28 C-terminal domain FDE89_11290 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FDE89_11290 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FDE89_11300 PF07715 TonB-dependent Receptor Plug Domain FDE89_11300 PF00593 TonB dependent receptor FDE89_11305 PF00156 Phosphoribosyl transferase domain FDE89_11310 PF03372 Endonuclease/Exonuclease/phosphatase family FDE89_11315 PF03960 ArsC family FDE89_11325 PF07859 alpha/beta hydrolase fold FDE89_11330 PF07694 5TMR of 5TMR-LYT FDE89_11330 PF00990 Diguanylate cyclase, GGDEF domain FDE89_11335 PF11412 Disulphide bond corrector protein DsbC FDE89_11335 PF02683 Cytochrome C biogenesis protein transmembrane region FDE89_11365 PF00576 HIUase/Transthyretin family FDE89_11370 PF00860 Permease family FDE89_11380 PF01494 FAD binding domain FDE89_11385 PF03561 Allantoicase repeat FDE89_11390 PF04115 Ureidoglycolate lyase FDE89_11395 PF00106 short chain dehydrogenase FDE89_11400 PF00986 DNA gyrase B subunit, carboxyl terminus FDE89_11400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_11400 PF01751 Toprim domain FDE89_11400 PF00204 DNA gyrase B FDE89_11405 PF05728 Uncharacterised protein family (UPF0227) FDE89_11420 PF01476 LysM domain FDE89_11420 PF00877 NlpC/P60 family FDE89_11425 PF04717 Type VI secretion system, phage-baseplate injector FDE89_11430 PF02600 Disulfide bond formation protein DsbB FDE89_11435 PF04262 Glutamate-cysteine ligase FDE89_11450 PF04286 Protein of unknown function (DUF445) FDE89_11455 PF00155 Aminotransferase class I and II FDE89_11460 PF01554 MatE FDE89_11465 PF00106 short chain dehydrogenase FDE89_11475 PF00486 Transcriptional regulatory protein, C terminal FDE89_11475 PF00072 Response regulator receiver domain FDE89_11480 PF11808 Phosphate regulon sensor protein PhoR FDE89_11480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_11480 PF00512 His Kinase A (phospho-acceptor) domain FDE89_11480 PF00989 PAS fold FDE89_11500 PF03069 Acetamidase/Formamidase family FDE89_11505 PF02666 Phosphatidylserine decarboxylase FDE89_11510 PF00581 Rhodanese-like domain FDE89_11515 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDE89_11515 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FDE89_11520 PF02580 D-Tyr-tRNA(Tyr) deacylase FDE89_11550 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDE89_11550 PF00925 GTP cyclohydrolase II FDE89_11555 PF00885 6,7-dimethyl-8-ribityllumazine synthase FDE89_11560 PF01029 NusB family FDE89_11565 PF00586 AIR synthase related protein, N-terminal domain FDE89_11565 PF02769 AIR synthase related protein, C-terminal domain FDE89_11570 PF04608 Phosphatidylglycerophosphatase A FDE89_11575 PF12804 MobA-like NTP transferase domain FDE89_11575 PF14602 Hexapeptide repeat of succinyl-transferase FDE89_11575 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_11580 PF01380 SIS domain FDE89_11585 PF01177 Asp/Glu/Hydantoin racemase FDE89_11600 PF00491 Arginase family FDE89_11610 PF00324 Amino acid permease FDE89_11615 PF00221 Aromatic amino acid lyase FDE89_11620 PF17391 Urocanase N-terminal domain FDE89_11620 PF17392 Urocanase C-terminal domain FDE89_11620 PF01175 Urocanase Rossmann-like domain FDE89_11625 PF05962 HutD FDE89_11630 PF07702 UTRA domain FDE89_11630 PF00392 Bacterial regulatory proteins, gntR family FDE89_11640 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDE89_11640 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDE89_11650 PF00324 Amino acid permease FDE89_11660 PF02798 Glutathione S-transferase, N-terminal domain FDE89_11660 PF14497 Glutathione S-transferase, C-terminal domain FDE89_11665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDE89_11675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDE89_11680 PF04463 Protein of unknown function (DUF523) FDE89_11685 PF01554 MatE FDE89_11690 PF01758 Sodium Bile acid symporter family FDE89_11695 PF00857 Isochorismatase family FDE89_11700 PF00701 Dihydrodipicolinate synthetase family FDE89_11710 PF01259 SAICAR synthetase FDE89_11720 PF01226 Formate/nitrite transporter FDE89_11725 PF00004 ATPase family associated with various cellular activities (AAA) FDE89_11725 PF12002 MgsA AAA+ ATPase C terminal FDE89_11725 PF16193 AAA C-terminal domain FDE89_11730 PF07995 Glucose / Sorbosone dehydrogenase FDE89_11735 PF03692 Putative zinc- or iron-chelating domain FDE89_11740 PF07043 Protein of unknown function (DUF1328) FDE89_11755 PF00730 HhH-GPD superfamily base excision DNA repair protein FDE89_11755 PF14815 NUDIX domain FDE89_11755 PF00633 Helix-hairpin-helix motif FDE89_11755 PF10576 Iron-sulfur binding domain of endonuclease III FDE89_11770 PF03352 Methyladenine glycosylase FDE89_11775 PF00107 Zinc-binding dehydrogenase FDE89_11775 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_11795 PF03466 LysR substrate binding domain FDE89_11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_11800 PF00248 Aldo/keto reductase family FDE89_11805 PF07690 Major Facilitator Superfamily FDE89_11815 PF01113 Dihydrodipicolinate reductase, N-terminus FDE89_11815 PF05173 Dihydrodipicolinate reductase, C-terminus FDE89_11825 PF00226 DnaJ domain FDE89_11825 PF01556 DnaJ C terminal domain FDE89_11825 PF00684 DnaJ central domain FDE89_11835 PF00873 AcrB/AcrD/AcrF family FDE89_11840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDE89_11845 PF08361 MAATS-type transcriptional repressor, C-terminal region FDE89_11845 PF00440 Bacterial regulatory proteins, tetR family FDE89_11850 PF00311 Phosphoenolpyruvate carboxylase FDE89_11855 PF00860 Permease family FDE89_11875 PF00920 Dehydratase family FDE89_11880 PF02911 Formyl transferase, C-terminal domain FDE89_11880 PF00551 Formyl transferase FDE89_11885 PF01189 16S rRNA methyltransferase RsmB/F FDE89_11885 PF01029 NusB family FDE89_11895 PF00209 Sodium:neurotransmitter symporter family FDE89_11935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDE89_11940 PF07859 alpha/beta hydrolase fold FDE89_11965 PF01025 GrpE FDE89_11970 PF00012 Hsp70 protein FDE89_11990 PF13406 Transglycosylase SLT domain FDE89_11995 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FDE89_11995 PF02222 ATP-grasp domain FDE89_12000 PF00731 AIR carboxylase FDE89_12015 PF02875 Mur ligase family, glutamate ligase domain FDE89_12015 PF08245 Mur ligase middle domain FDE89_12015 PF01225 Mur ligase family, catalytic domain FDE89_12025 PF01569 PAP2 superfamily FDE89_12030 PF03741 Integral membrane protein TerC family FDE89_12040 PF03738 Glutathionylspermidine synthase preATP-grasp FDE89_12045 PF00355 Rieske [2Fe-2S] domain FDE89_12050 PF01979 Amidohydrolase family FDE89_12055 PF00156 Phosphoribosyl transferase domain FDE89_12065 PF10411 Disulfide bond isomerase protein N-terminus FDE89_12065 PF13098 Thioredoxin-like domain FDE89_12070 PF16916 Dimerisation domain of Zinc Transporter FDE89_12070 PF01545 Cation efflux family FDE89_12075 PF02583 Metal-sensitive transcriptional repressor FDE89_12080 PF10396 GTP-binding protein TrmE N-terminus FDE89_12080 PF01926 50S ribosome-binding GTPase FDE89_12080 PF12631 MnmE helical domain FDE89_12085 PF14849 YidC periplasmic domain FDE89_12085 PF02096 60Kd inner membrane protein FDE89_12090 PF01809 Putative membrane protein insertion efficiency factor FDE89_12095 PF00825 Ribonuclease P FDE89_12100 PF00468 Ribosomal protein L34 FDE89_12105 PF00308 Bacterial dnaA protein FDE89_12105 PF08299 Bacterial dnaA protein helix-turn-helix FDE89_12105 PF11638 DnaA N-terminal domain FDE89_12110 PF02768 DNA polymerase III beta subunit, C-terminal domain FDE89_12110 PF00712 DNA polymerase III beta subunit, N-terminal domain FDE89_12110 PF02767 DNA polymerase III beta subunit, central domain FDE89_12115 PF02463 RecF/RecN/SMC N terminal domain FDE89_12120 PF18053 DNA gyrase B subunit insert domain FDE89_12120 PF00986 DNA gyrase B subunit, carboxyl terminus FDE89_12120 PF00204 DNA gyrase B FDE89_12120 PF01751 Toprim domain FDE89_12120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_12130 PF09335 SNARE associated Golgi protein FDE89_12135 PF12848 ABC transporter FDE89_12135 PF00005 ABC transporter FDE89_12155 PF01521 Iron-sulphur cluster biosynthesis FDE89_12160 PF00561 alpha/beta hydrolase fold FDE89_12165 PF03702 Anhydro-N-acetylmuramic acid kinase FDE89_12170 PF00579 tRNA synthetases class I (W and Y) FDE89_12205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDE89_12210 PF01252 Signal peptidase (SPase) II FDE89_12215 PF08264 Anticodon-binding domain of tRNA FDE89_12215 PF00133 tRNA synthetases class I (I, L, M and V) FDE89_12215 PF06827 Zinc finger found in FPG and IleRS FDE89_12220 PF06574 FAD synthetase FDE89_12220 PF01687 Riboflavin kinase FDE89_12230 PF01048 Phosphorylase superfamily FDE89_12235 PF00440 Bacterial regulatory proteins, tetR family FDE89_12235 PF08362 YcdC-like protein, C-terminal region FDE89_12240 PF00005 ABC transporter FDE89_12245 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_12250 PF00296 Luciferase-like monooxygenase FDE89_12255 PF09084 NMT1/THI5 like FDE89_12260 PF09084 NMT1/THI5 like FDE89_12265 PF00696 Amino acid kinase family FDE89_12265 PF00583 Acetyltransferase (GNAT) family FDE89_12280 PF00106 short chain dehydrogenase FDE89_12285 PF13419 Haloacid dehalogenase-like hydrolase FDE89_12295 PF01323 DSBA-like thioredoxin domain FDE89_12300 PF00440 Bacterial regulatory proteins, tetR family FDE89_12300 PF08360 QacR-like protein, C-terminal region FDE89_12305 PF00440 Bacterial regulatory proteins, tetR family FDE89_12310 PF00175 Oxidoreductase NAD-binding domain FDE89_12315 PF00487 Fatty acid desaturase FDE89_12320 PF01138 3' exoribonuclease family, domain 1 FDE89_12320 PF03725 3' exoribonuclease family, domain 2 FDE89_12325 PF05506 Domain of unknown function (DUF756) FDE89_12325 PF04185 Phosphoesterase family FDE89_12335 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FDE89_12335 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FDE89_12340 PF01510 N-acetylmuramoyl-L-alanine amidase FDE89_12345 PF03023 Lipid II flippase MurJ FDE89_12350 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDE89_12350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDE89_12355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDE89_12355 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDE89_12360 PF13614 AAA domain FDE89_12360 PF13807 G-rich domain on putative tyrosine kinase FDE89_12360 PF02706 Chain length determinant protein FDE89_12365 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDE89_12370 PF10531 SLBB domain FDE89_12370 PF02563 Polysaccharide biosynthesis/export protein FDE89_12370 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FDE89_12375 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDE89_12375 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDE89_12375 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDE89_12380 PF02719 Polysaccharide biosynthesis protein FDE89_12385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FDE89_12390 PF02350 UDP-N-acetylglucosamine 2-epimerase FDE89_12395 PF03102 NeuB family FDE89_12395 PF08666 SAF domain FDE89_12405 PF00483 Nucleotidyl transferase FDE89_12410 PF02348 Cytidylyltransferase FDE89_12455 PF02719 Polysaccharide biosynthesis protein FDE89_12455 PF08485 Polysaccharide biosynthesis protein C-terminal FDE89_12460 PF01370 NAD dependent epimerase/dehydratase family FDE89_12465 PF02350 UDP-N-acetylglucosamine 2-epimerase FDE89_12470 PF13579 Glycosyl transferase 4-like domain FDE89_12475 PF01370 NAD dependent epimerase/dehydratase family FDE89_12480 PF00953 Glycosyl transferase family 4 FDE89_12480 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FDE89_12490 PF02719 Polysaccharide biosynthesis protein FDE89_12495 PF00483 Nucleotidyl transferase FDE89_12500 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDE89_12500 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDE89_12500 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDE89_12505 PF00342 Phosphoglucose isomerase FDE89_12510 PF16363 GDP-mannose 4,6 dehydratase FDE89_12515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDE89_12515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDE89_12515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDE89_12515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDE89_12520 PF02652 L-lactate permease FDE89_12525 PF07729 FCD domain FDE89_12525 PF00392 Bacterial regulatory proteins, gntR family FDE89_12530 PF01070 FMN-dependent dehydrogenase FDE89_12535 PF01565 FAD binding domain FDE89_12535 PF09330 D-lactate dehydrogenase, membrane binding FDE89_12540 PF00155 Aminotransferase class I and II FDE89_12550 PF07729 FCD domain FDE89_12550 PF00392 Bacterial regulatory proteins, gntR family FDE89_12560 PF00285 Citrate synthase, C-terminal domain FDE89_12565 PF00694 Aconitase C-terminal domain FDE89_12565 PF00330 Aconitase family (aconitate hydratase) FDE89_12600 PF13333 Integrase core domain FDE89_12600 PF00665 Integrase core domain FDE89_12600 PF13276 HTH-like domain FDE89_12605 PF00109 Beta-ketoacyl synthase, N-terminal domain FDE89_12605 PF02801 Beta-ketoacyl synthase, C-terminal domain FDE89_12655 PF00849 RNA pseudouridylate synthase FDE89_12670 PF07715 TonB-dependent Receptor Plug Domain FDE89_12670 PF00593 TonB dependent receptor FDE89_12680 PF01037 Lrp/AsnC ligand binding domain FDE89_12685 PF01266 FAD dependent oxidoreductase FDE89_12690 PF00842 Alanine racemase, C-terminal domain FDE89_12690 PF01168 Alanine racemase, N-terminal domain FDE89_12695 PF01042 Endoribonuclease L-PSP FDE89_12700 PF00324 Amino acid permease FDE89_12705 PF00324 Amino acid permease FDE89_12715 PF00171 Aldehyde dehydrogenase family FDE89_12720 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDE89_12720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDE89_12725 PF13193 AMP-binding enzyme C-terminal domain FDE89_12725 PF00501 AMP-binding enzyme FDE89_12730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_12730 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_12730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_12735 PF00378 Enoyl-CoA hydratase/isomerase FDE89_12740 PF00378 Enoyl-CoA hydratase/isomerase FDE89_12750 PF00765 Autoinducer synthase FDE89_12760 PF00196 Bacterial regulatory proteins, luxR family FDE89_12760 PF03472 Autoinducer binding domain FDE89_12765 PF00501 AMP-binding enzyme FDE89_12770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_12770 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_12770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_12775 PF14765 Polyketide synthase dehydratase FDE89_12775 PF16197 Ketoacyl-synthetase C-terminal extension FDE89_12775 PF00109 Beta-ketoacyl synthase, N-terminal domain FDE89_12775 PF00975 Thioesterase domain FDE89_12775 PF00550 Phosphopantetheine attachment site FDE89_12775 PF02801 Beta-ketoacyl synthase, C-terminal domain FDE89_12775 PF08242 Methyltransferase domain FDE89_12780 PF13193 AMP-binding enzyme C-terminal domain FDE89_12780 PF00501 AMP-binding enzyme FDE89_12780 PF00550 Phosphopantetheine attachment site FDE89_12780 PF00668 Condensation domain FDE89_12780 PF07993 Male sterility protein FDE89_12785 PF00975 Thioesterase domain FDE89_12785 PF00550 Phosphopantetheine attachment site FDE89_12785 PF13193 AMP-binding enzyme C-terminal domain FDE89_12785 PF00501 AMP-binding enzyme FDE89_12785 PF00668 Condensation domain FDE89_12800 PF12697 Alpha/beta hydrolase family FDE89_12805 PF01648 4'-phosphopantetheinyl transferase superfamily FDE89_12830 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase FDE89_12855 PF00753 Metallo-beta-lactamase superfamily FDE89_12865 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FDE89_12870 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDE89_12875 PF03091 CutA1 divalent ion tolerance protein FDE89_12880 PF00166 Chaperonin 10 Kd subunit FDE89_12885 PF00118 TCP-1/cpn60 chaperonin family FDE89_12905 PF13936 Helix-turn-helix domain FDE89_12905 PF00665 Integrase core domain FDE89_12915 PF01443 Viral (Superfamily 1) RNA helicase FDE89_12915 PF03389 MobA/MobL family FDE89_12915 PF17841 BID domain of Bartonella effector protein (Bep) FDE89_12925 PF13610 DDE domain FDE89_12940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDE89_12940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDE89_12940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDE89_12940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDE89_12945 PF00809 Pterin binding enzyme FDE89_12970 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FDE89_12975 PF00719 Inorganic pyrophosphatase FDE89_13000 PF13742 OB-fold nucleic acid binding domain FDE89_13000 PF02601 Exonuclease VII, large subunit FDE89_13015 PF11799 impB/mucB/samB family C-terminal domain FDE89_13015 PF11798 IMS family HHH motif FDE89_13015 PF13438 Domain of unknown function (DUF4113) FDE89_13015 PF00817 impB/mucB/samB family FDE89_13020 PF00717 Peptidase S24-like FDE89_13025 PF00884 Sulfatase FDE89_13025 PF08019 Phosphoethanolamine transferase EptA/EptB FDE89_13030 PF00486 Transcriptional regulatory protein, C terminal FDE89_13030 PF00072 Response regulator receiver domain FDE89_13035 PF00512 His Kinase A (phospho-acceptor) domain FDE89_13035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_13035 PF08521 Two-component sensor kinase N-terminal FDE89_13045 PF01219 Prokaryotic diacylglycerol kinase FDE89_13100 PF12161 HsdM N-terminal domain FDE89_13100 PF02384 N-6 DNA Methylase FDE89_13105 PF01420 Type I restriction modification DNA specificity domain FDE89_13115 PF12008 Type I restriction and modification enzyme - subunit R C terminal FDE89_13115 PF18766 SWI2/SNF2 ATPase FDE89_13115 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FDE89_13130 PF07120 Protein of unknown function (DUF1376) FDE89_13165 PF01722 BolA-like protein FDE89_13175 PF13614 AAA domain FDE89_13190 PF09335 SNARE associated Golgi protein FDE89_13195 PF07681 DoxX FDE89_13200 PF04286 Protein of unknown function (DUF445) FDE89_13205 PF02540 NAD synthase FDE89_13205 PF00958 GMP synthase C terminal domain FDE89_13205 PF00117 Glutamine amidotransferase class-I FDE89_13210 PF13427 Domain of unknown function (DUF4111) FDE89_13210 PF01909 Nucleotidyltransferase domain FDE89_13215 PF03551 Transcriptional regulator PadR-like family FDE89_13225 PF02678 Pirin FDE89_13225 PF05726 Pirin C-terminal cupin domain FDE89_13245 PF03485 Arginyl tRNA synthetase N terminal domain FDE89_13245 PF00750 tRNA synthetases class I (R) FDE89_13245 PF05746 DALR anticodon binding domain FDE89_13250 PF00390 Malic enzyme, N-terminal domain FDE89_13250 PF03949 Malic enzyme, NAD binding domain FDE89_13260 PF04261 Dyp-type peroxidase family FDE89_13265 PF01810 LysE type translocator FDE89_13270 PF00950 ABC 3 transport family FDE89_13275 PF00005 ABC transporter FDE89_13295 PF00119 ATP synthase A chain FDE89_13300 PF00137 ATP synthase subunit C FDE89_13305 PF00430 ATP synthase B/B' CF(0) FDE89_13310 PF00213 ATP synthase delta (OSCP) subunit FDE89_13315 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDE89_13315 PF00306 ATP synthase alpha/beta chain, C terminal domain FDE89_13315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDE89_13320 PF00231 ATP synthase FDE89_13325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDE89_13325 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDE89_13330 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FDE89_13340 PF00255 Glutathione peroxidase FDE89_13350 PF07690 Major Facilitator Superfamily FDE89_13355 PF00440 Bacterial regulatory proteins, tetR family FDE89_13360 PF00892 EamA-like transporter family FDE89_13365 PF01300 Telomere recombination FDE89_13380 PF01327 Polypeptide deformylase FDE89_13405 PF00440 Bacterial regulatory proteins, tetR family FDE89_13430 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_13440 PF03358 NADPH-dependent FMN reductase FDE89_13460 PF04055 Radical SAM superfamily FDE89_13460 PF08497 Radical SAM N-terminal FDE89_13460 PF11842 Domain of unknown function (DUF3362) FDE89_13490 PF03641 Possible lysine decarboxylase FDE89_13495 PF03741 Integral membrane protein TerC family FDE89_13495 PF03471 Transporter associated domain FDE89_13500 PF02810 SEC-C motif FDE89_13505 PF03458 UPF0126 domain FDE89_13510 PF07690 Major Facilitator Superfamily FDE89_13515 PF03989 DNA gyrase C-terminal domain, beta-propeller FDE89_13515 PF00521 DNA gyrase/topoisomerase IV, subunit A FDE89_13520 PF13193 AMP-binding enzyme C-terminal domain FDE89_13520 PF00501 AMP-binding enzyme FDE89_13535 PF00719 Inorganic pyrophosphatase FDE89_13540 PF03573 outer membrane porin, OprD family FDE89_13550 PF00701 Dihydrodipicolinate synthetase family FDE89_13565 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDE89_13565 PF01078 Magnesium chelatase, subunit ChlI FDE89_13575 PF00665 Integrase core domain FDE89_13595 PF00582 Universal stress protein family FDE89_13600 PF00916 Sulfate permease family FDE89_13600 PF01740 STAS domain FDE89_13635 PF07690 Major Facilitator Superfamily FDE89_13640 PF02909 Tetracyclin repressor-like, C-terminal domain FDE89_13640 PF00440 Bacterial regulatory proteins, tetR family FDE89_13685 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDE89_13685 PF01078 Magnesium chelatase, subunit ChlI FDE89_13695 PF00543 Nitrogen regulatory protein P-II FDE89_13700 PF00909 Ammonium Transporter Family FDE89_13705 PF03477 ATP cone domain FDE89_13710 PF01872 RibD C-terminal domain FDE89_13710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDE89_13720 PF00677 Lumazine binding domain FDE89_13740 PF02789 Cytosol aminopeptidase family, N-terminal domain FDE89_13740 PF00883 Cytosol aminopeptidase family, catalytic domain FDE89_13750 PF03739 Lipopolysaccharide export system permease LptF/LptG FDE89_13755 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FDE89_13755 PF01676 Metalloenzyme superfamily FDE89_13760 PF03572 Peptidase family S41 FDE89_13760 PF00595 PDZ domain FDE89_13765 PF00072 Response regulator receiver domain FDE89_13765 PF02954 Bacterial regulatory protein, Fis family FDE89_13765 PF00158 Sigma-54 interaction domain FDE89_13770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_13770 PF00512 His Kinase A (phospho-acceptor) domain FDE89_13775 PF00072 Response regulator receiver domain FDE89_13775 PF00196 Bacterial regulatory proteins, luxR family FDE89_13780 PF00768 D-alanyl-D-alanine carboxypeptidase FDE89_13785 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_13790 PF00742 Homoserine dehydrogenase FDE89_13790 PF03447 Homoserine dehydrogenase, NAD binding domain FDE89_13790 PF01842 ACT domain FDE89_13795 PF10411 Disulfide bond isomerase protein N-terminus FDE89_13795 PF13098 Thioredoxin-like domain FDE89_13800 PF02899 Phage integrase, N-terminal SAM-like domain FDE89_13800 PF00589 Phage integrase family FDE89_13810 PF07664 Ferrous iron transport protein B C terminus FDE89_13810 PF07670 Nucleoside recognition FDE89_13810 PF02421 Ferrous iron transport protein B FDE89_13820 PF08245 Mur ligase middle domain FDE89_13820 PF02875 Mur ligase family, glutamate ligase domain FDE89_13825 PF01098 Cell cycle protein FDE89_13830 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDE89_13835 PF01258 Prokaryotic dksA/traR C4-type zinc finger FDE89_13840 PF00149 Calcineurin-like phosphoesterase FDE89_13845 PF00293 NUDIX domain FDE89_13850 PF01964 Radical SAM ThiC family FDE89_13850 PF13667 ThiC-associated domain FDE89_13865 PF00892 EamA-like transporter family FDE89_13870 PF02321 Outer membrane efflux protein FDE89_13875 PF01895 PhoU domain FDE89_13880 PF04362 Bacterial Fe(2+) trafficking FDE89_13885 PF00206 Lyase FDE89_13885 PF14698 Argininosuccinate lyase C-terminal FDE89_13890 PF07694 5TMR of 5TMR-LYT FDE89_13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_13890 PF06580 Histidine kinase FDE89_13895 PF00072 Response regulator receiver domain FDE89_13895 PF04397 LytTr DNA-binding domain FDE89_13900 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FDE89_13900 PF03900 Porphobilinogen deaminase, C-terminal domain FDE89_13930 PF00816 H-NS histone family FDE89_13945 PF00263 Bacterial type II and III secretion system protein FDE89_13945 PF03958 Bacterial type II/III secretion system short domain FDE89_13950 PF12401 Protein of unknown function (DUF2662) FDE89_13950 PF00498 FHA domain FDE89_13955 PF13419 Haloacid dehalogenase-like hydrolase FDE89_13960 PF00425 chorismate binding enzyme FDE89_13960 PF04715 Anthranilate synthase component I, N terminal region FDE89_13995 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FDE89_14000 PF02357 Transcription termination factor nusG FDE89_14000 PF00467 KOW motif FDE89_14005 PF03946 Ribosomal protein L11, N-terminal domain FDE89_14005 PF00298 Ribosomal protein L11, RNA binding domain FDE89_14010 PF00687 Ribosomal protein L1p/L10e family FDE89_14015 PF00466 Ribosomal protein L10 FDE89_14020 PF00542 Ribosomal protein L7/L12 C-terminal domain FDE89_14020 PF16320 Ribosomal protein L7/L12 dimerisation domain FDE89_14025 PF04561 RNA polymerase Rpb2, domain 2 FDE89_14025 PF04563 RNA polymerase beta subunit FDE89_14025 PF04565 RNA polymerase Rpb2, domain 3 FDE89_14025 PF04560 RNA polymerase Rpb2, domain 7 FDE89_14025 PF10385 RNA polymerase beta subunit external 1 domain FDE89_14025 PF00562 RNA polymerase Rpb2, domain 6 FDE89_14030 PF05000 RNA polymerase Rpb1, domain 4 FDE89_14030 PF04998 RNA polymerase Rpb1, domain 5 FDE89_14030 PF04983 RNA polymerase Rpb1, domain 3 FDE89_14030 PF00623 RNA polymerase Rpb1, domain 2 FDE89_14030 PF04997 RNA polymerase Rpb1, domain 1 FDE89_14050 PF00561 alpha/beta hydrolase fold FDE89_14055 PF03553 Na+/H+ antiporter family FDE89_14055 PF13726 Na+-H+ antiporter family FDE89_14070 PF00183 Hsp90 protein FDE89_14070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_14085 PF01323 DSBA-like thioredoxin domain FDE89_14095 PF00376 MerR family regulatory protein FDE89_14095 PF09278 MerR, DNA binding FDE89_14115 PF02803 Thiolase, C-terminal domain FDE89_14115 PF00108 Thiolase, N-terminal domain FDE89_14120 PF00378 Enoyl-CoA hydratase/isomerase FDE89_14120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDE89_14120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDE89_14145 PF01541 GIY-YIG catalytic domain FDE89_14145 PF02151 UvrB/uvrC motif FDE89_14145 PF08459 UvrC Helix-hairpin-helix N-terminal FDE89_14155 PF01066 CDP-alcohol phosphatidyltransferase FDE89_14160 PF12833 Helix-turn-helix domain FDE89_14160 PF02805 Metal binding domain of Ada FDE89_14160 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDE89_14160 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDE89_14185 PF13533 Biotin-lipoyl like FDE89_14190 PF03652 Holliday junction resolvase FDE89_14200 PF02463 RecF/RecN/SMC N terminal domain FDE89_14210 PF06865 Pyrimidine/purine nucleoside phosphorylase FDE89_14215 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDE89_14215 PF00588 SpoU rRNA Methylase family FDE89_14225 PF01121 Dephospho-CoA kinase FDE89_14230 PF01478 Type IV leader peptidase family FDE89_14230 PF06750 Bacterial Peptidase A24 N-terminal domain FDE89_14235 PF00482 Type II secretion system (T2SS), protein F FDE89_14240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDE89_14240 PF00437 Type II/IV secretion system protein FDE89_14245 PF00121 Triosephosphate isomerase FDE89_14250 PF03840 Preprotein translocase SecG subunit FDE89_14270 PF17384 RimP C-terminal SH3 domain FDE89_14270 PF02576 RimP N-terminal domain FDE89_14275 PF08529 NusA N-terminal domain FDE89_14275 PF00575 S1 RNA binding domain FDE89_14275 PF13184 NusA-like KH domain FDE89_14280 PF00009 Elongation factor Tu GTP binding domain FDE89_14280 PF11987 Translation-initiation factor 2 FDE89_14280 PF08364 Bacterial translation initiation factor IF-2 associated region FDE89_14280 PF04760 Translation initiation factor IF-2, N-terminal region FDE89_14285 PF02033 Ribosome-binding factor A FDE89_14295 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FDE89_14305 PF00361 Proton-conducting membrane transporter FDE89_14310 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDE89_14315 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FDE89_14315 PF13244 Domain of unknown function (DUF4040) FDE89_14315 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDE89_14315 PF00361 Proton-conducting membrane transporter FDE89_14330 PF01502 Phosphoribosyl-AMP cyclohydrolase FDE89_14335 PF01494 FAD binding domain FDE89_14340 PF03109 ABC1 family FDE89_14350 PF01209 ubiE/COQ5 methyltransferase family FDE89_14360 PF03976 Polyphosphate kinase 2 (PPK2) FDE89_14370 PF17946 RecC C-terminal domain FDE89_14375 PF00580 UvrD/REP helicase N-terminal domain FDE89_14375 PF12705 PD-(D/E)XK nuclease superfamily FDE89_14375 PF13361 UvrD-like helicase C-terminal domain FDE89_14380 PF13538 UvrD-like helicase C-terminal domain FDE89_14390 PF00312 Ribosomal protein S15 FDE89_14395 PF01138 3' exoribonuclease family, domain 1 FDE89_14395 PF00575 S1 RNA binding domain FDE89_14395 PF03725 3' exoribonuclease family, domain 2 FDE89_14395 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FDE89_14395 PF00013 KH domain FDE89_14400 PF01544 CorA-like Mg2+ transporter protein FDE89_14410 PF01556 DnaJ C terminal domain FDE89_14410 PF00226 DnaJ domain FDE89_14420 PF01430 Hsp33 protein FDE89_14425 PF02254 TrkA-N domain FDE89_14425 PF00999 Sodium/hydrogen exchanger family FDE89_14430 PF00270 DEAD/DEAH box helicase FDE89_14430 PF00271 Helicase conserved C-terminal domain FDE89_14430 PF17764 3′ DNA-binding domain (3′BD) FDE89_14430 PF18074 Primosomal protein N C-terminal domain FDE89_14430 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FDE89_14435 PF00482 Type II secretion system (T2SS), protein F FDE89_14440 PF07963 Prokaryotic N-terminal methylation motif FDE89_14440 PF08334 Type II secretion system (T2SS), protein G FDE89_14450 PF01588 Putative tRNA binding domain FDE89_14455 PF00795 Carbon-nitrogen hydrolase FDE89_14460 PF00571 CBS domain FDE89_14460 PF03471 Transporter associated domain FDE89_14465 PF01206 Sulfurtransferase TusA FDE89_14480 PF01177 Asp/Glu/Hydantoin racemase FDE89_14490 PF00762 Ferrochelatase FDE89_14495 PF00753 Metallo-beta-lactamase superfamily FDE89_14500 PF03884 DNA gyrase inhibitor YacG FDE89_14520 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FDE89_14535 PF01197 Ribosomal protein L31 FDE89_14540 PF03109 ABC1 family FDE89_14545 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDE89_14545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_14550 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDE89_14550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_14550 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_14555 PF01554 MatE FDE89_14565 PF04055 Radical SAM superfamily FDE89_14565 PF06969 HemN C-terminal domain FDE89_14570 PF00106 short chain dehydrogenase FDE89_14575 PF03466 LysR substrate binding domain FDE89_14575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_14590 PF00501 AMP-binding enzyme FDE89_14590 PF13193 AMP-binding enzyme C-terminal domain FDE89_14595 PF10150 Ribonuclease E/G family FDE89_14595 PF12111 Polyribonucleotide phosphorylase C terminal FDE89_14595 PF00575 S1 RNA binding domain FDE89_14605 PF01479 S4 domain FDE89_14605 PF00849 RNA pseudouridylate synthase FDE89_14610 PF13419 Haloacid dehalogenase-like hydrolase FDE89_14615 PF13280 WYL domain FDE89_14615 PF08279 HTH domain FDE89_14620 PF02798 Glutathione S-transferase, N-terminal domain FDE89_14630 PF03466 LysR substrate binding domain FDE89_14630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_14635 PF12706 Beta-lactamase superfamily domain FDE89_14640 PF00141 Peroxidase FDE89_14645 PF05524 PEP-utilising enzyme, N-terminal FDE89_14645 PF00391 PEP-utilising enzyme, mobile domain FDE89_14645 PF02896 PEP-utilising enzyme, TIM barrel domain FDE89_14645 PF01590 GAF domain FDE89_14650 PF00293 NUDIX domain FDE89_14670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_14670 PF03466 LysR substrate binding domain FDE89_14680 PF00330 Aconitase family (aconitate hydratase) FDE89_14685 PF00694 Aconitase C-terminal domain FDE89_14695 PF00180 Isocitrate/isopropylmalate dehydrogenase FDE89_14710 PF01176 Translation initiation factor 1A / IF-1 FDE89_14720 PF01416 tRNA pseudouridine synthase FDE89_14740 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDE89_14740 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDE89_14750 PF00375 Sodium:dicarboxylate symporter family FDE89_14760 PF03279 Bacterial lipid A biosynthesis acyltransferase FDE89_14765 PF01810 LysE type translocator FDE89_14780 PF00107 Zinc-binding dehydrogenase FDE89_14780 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_14785 PF01638 HxlR-like helix-turn-helix FDE89_14795 PF01131 DNA topoisomerase FDE89_14795 PF01751 Toprim domain FDE89_14795 PF08272 Topoisomerase I zinc-ribbon-like FDE89_14795 PF01396 Topoisomerase DNA binding C4 zinc finger FDE89_14810 PF13361 UvrD-like helicase C-terminal domain FDE89_14810 PF00580 UvrD/REP helicase N-terminal domain FDE89_14815 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FDE89_14835 PF00999 Sodium/hydrogen exchanger family FDE89_14835 PF02254 TrkA-N domain FDE89_14840 PF00471 Ribosomal protein L33 FDE89_14845 PF00830 Ribosomal L28 family FDE89_14850 PF00171 Aldehyde dehydrogenase family FDE89_14860 PF01842 ACT domain FDE89_14860 PF00551 Formyl transferase FDE89_14870 PF01618 MotA/TolQ/ExbB proton channel family FDE89_14880 PF01625 Peptide methionine sulfoxide reductase FDE89_14890 PF00186 Dihydrofolate reductase FDE89_14895 PF00303 Thymidylate synthase FDE89_14910 PF01790 Prolipoprotein diacylglyceryl transferase FDE89_14930 PF00902 Sec-independent protein translocase protein (TatC) FDE89_14935 PF02416 mttA/Hcf106 family FDE89_14940 PF02416 mttA/Hcf106 family FDE89_14950 PF01725 Ham1 family FDE89_14960 PF00561 alpha/beta hydrolase fold FDE89_14960 PF07021 Methionine biosynthesis protein MetW FDE89_14965 PF00561 alpha/beta hydrolase fold FDE89_14970 PF08502 LeuA allosteric (dimerisation) domain FDE89_14970 PF00682 HMGL-like FDE89_14975 PF18331 PKHD-type hydroxylase C-terminal domain FDE89_14975 PF13640 2OG-Fe(II) oxygenase superfamily FDE89_14985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDE89_14985 PF05698 Bacterial trigger factor protein (TF) C-terminus FDE89_14985 PF05697 Bacterial trigger factor protein (TF) FDE89_14990 PF00574 Clp protease FDE89_14995 PF10431 C-terminal, D2-small domain, of ClpB protein FDE89_14995 PF07724 AAA domain (Cdc48 subfamily) FDE89_14995 PF06689 ClpX C4-type zinc finger FDE89_15010 PF05683 Fumarase C-terminus FDE89_15010 PF05681 Fumarate hydratase (Fumerase) FDE89_15015 PF07085 DRTGG domain FDE89_15015 PF01515 Phosphate acetyl/butaryl transferase FDE89_15020 PF00871 Acetokinase family FDE89_15025 PF00920 Dehydratase family FDE89_15030 PF01081 KDPG and KHG aldolase FDE89_15035 PF02447 GntP family permease FDE89_15040 PF01202 Shikimate kinase FDE89_15045 PF00171 Aldehyde dehydrogenase family FDE89_15050 PF00171 Aldehyde dehydrogenase family FDE89_15055 PF00561 alpha/beta hydrolase fold FDE89_15065 PF00933 Glycosyl hydrolase family 3 N terminal domain FDE89_15070 PF11818 C-terminal domain of tail specific protease (DUF3340) FDE89_15070 PF00595 PDZ domain FDE89_15070 PF17804 Tail specific protease N-terminal domain FDE89_15070 PF03572 Peptidase family S41 FDE89_15075 PF00534 Glycosyl transferases group 1 FDE89_15075 PF13439 Glycosyltransferase Family 4 FDE89_15080 PF01569 PAP2 superfamily FDE89_15085 PF04384 Iron-sulphur cluster assembly FDE89_15090 PF00334 Nucleoside diphosphate kinase FDE89_15095 PF04055 Radical SAM superfamily FDE89_15105 PF13464 Domain of unknown function (DUF4115) FDE89_15110 PF04551 GcpE protein FDE89_15115 PF13393 Histidyl-tRNA synthetase FDE89_15115 PF03129 Anticodon binding domain FDE89_15125 PF13360 PQQ-like domain FDE89_15130 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FDE89_15130 PF01926 50S ribosome-binding GTPase FDE89_15145 PF00550 Phosphopantetheine attachment site FDE89_15150 PF00550 Phosphopantetheine attachment site FDE89_15160 PF13193 AMP-binding enzyme C-terminal domain FDE89_15160 PF00501 AMP-binding enzyme FDE89_15175 PF00221 Aromatic amino acid lyase FDE89_15195 PF04820 Tryptophan halogenase FDE89_15205 PF00109 Beta-ketoacyl synthase, N-terminal domain FDE89_15205 PF02801 Beta-ketoacyl synthase, C-terminal domain FDE89_15220 PF00109 Beta-ketoacyl synthase, N-terminal domain FDE89_15220 PF02801 Beta-ketoacyl synthase, C-terminal domain FDE89_15235 PF02556 Preprotein translocase subunit SecB FDE89_15240 PF00462 Glutaredoxin FDE89_15250 PF03193 RsgA GTPase FDE89_15255 PF00929 Exonuclease FDE89_15270 PF02321 Outer membrane efflux protein FDE89_15275 PF02687 FtsX-like permease family FDE89_15275 PF00005 ABC transporter FDE89_15275 PF12704 MacB-like periplasmic core domain FDE89_15280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDE89_15295 PF13603 Leucyl-tRNA synthetase, Domain 2 FDE89_15295 PF08264 Anticodon-binding domain of tRNA FDE89_15295 PF09334 tRNA synthetases class I (M) FDE89_15295 PF00133 tRNA synthetases class I (I, L, M and V) FDE89_15305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDE89_15305 PF00205 Thiamine pyrophosphate enzyme, central domain FDE89_15305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDE89_15310 PF10369 Small subunit of acetolactate synthase FDE89_15315 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FDE89_15315 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDE89_15320 PF00990 Diguanylate cyclase, GGDEF domain FDE89_15320 PF00563 EAL domain FDE89_15320 PF03707 Bacterial signalling protein N terminal repeat FDE89_15350 PF03144 Elongation factor Tu domain 2 FDE89_15350 PF00009 Elongation factor Tu GTP binding domain FDE89_15350 PF16658 Class II release factor RF3, C-terminal domain FDE89_15365 PF01026 TatD related DNase FDE89_15370 PF00694 Aconitase C-terminal domain FDE89_15370 PF00330 Aconitase family (aconitate hydratase) FDE89_15380 PF00899 ThiF family FDE89_15390 PF03466 LysR substrate binding domain FDE89_15390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_15400 PF01207 Dihydrouridine synthase (Dus) FDE89_15405 PF07690 Major Facilitator Superfamily FDE89_15415 PF00892 EamA-like transporter family FDE89_15420 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FDE89_15420 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FDE89_15425 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FDE89_15430 PF02233 NAD(P) transhydrogenase beta subunit FDE89_15435 PF00106 short chain dehydrogenase FDE89_15445 PF01261 Xylose isomerase-like TIM barrel FDE89_15450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDE89_15450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDE89_15455 PF00378 Enoyl-CoA hydratase/isomerase FDE89_15460 PF01627 Hpt domain FDE89_15460 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDE89_15460 PF00672 HAMP domain FDE89_15460 PF00072 Response regulator receiver domain FDE89_15460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_15460 PF00512 His Kinase A (phospho-acceptor) domain FDE89_15465 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_15475 PF05958 tRNA (Uracil-5-)-methyltransferase FDE89_15480 PF02824 TGS domain FDE89_15480 PF13291 ACT domain FDE89_15480 PF04607 Region found in RelA / SpoT proteins FDE89_15490 PF03819 MazG nucleotide pyrophosphohydrolase domain FDE89_15500 PF01743 Poly A polymerase head domain FDE89_15500 PF12626 Polymerase A arginine-rich C-terminus FDE89_15500 PF12627 Probable RNA and SrmB- binding site of polymerase A FDE89_15505 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FDE89_15510 PF02548 Ketopantoate hydroxymethyltransferase FDE89_15515 PF02569 Pantoate-beta-alanine ligase FDE89_15520 PF03668 P-loop ATPase protein family FDE89_15525 PF00381 PTS HPr component phosphorylation site FDE89_15530 PF04751 Protein of unknown function (DUF615) FDE89_15535 PF13193 AMP-binding enzyme C-terminal domain FDE89_15535 PF00501 AMP-binding enzyme FDE89_15540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDE89_15540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDE89_15540 PF03129 Anticodon binding domain FDE89_15540 PF02824 TGS domain FDE89_15545 PF05198 Translation initiation factor IF-3, N-terminal domain FDE89_15545 PF00707 Translation initiation factor IF-3, C-terminal domain FDE89_15555 PF02798 Glutathione S-transferase, N-terminal domain FDE89_15555 PF00043 Glutathione S-transferase, C-terminal domain FDE89_15560 PF09335 SNARE associated Golgi protein FDE89_15565 PF07690 Major Facilitator Superfamily FDE89_15570 PF01632 Ribosomal protein L35 FDE89_15575 PF00453 Ribosomal protein L20 FDE89_15595 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FDE89_15595 PF01409 tRNA synthetases class II core domain (F) FDE89_15600 PF01588 Putative tRNA binding domain FDE89_15600 PF03483 B3/4 domain FDE89_15600 PF03484 tRNA synthetase B5 domain FDE89_15600 PF03147 Ferredoxin-fold anticodon binding domain FDE89_15600 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FDE89_15605 PF00216 Bacterial DNA-binding protein FDE89_15620 PF07498 Rho termination factor, N-terminal domain FDE89_15620 PF07497 Rho termination factor, RNA-binding domain FDE89_15620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDE89_15625 PF00085 Thioredoxin FDE89_15630 PF02541 Ppx/GppA phosphatase family FDE89_15635 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FDE89_15640 PF11734 TilS substrate C-terminal domain FDE89_15640 PF09179 TilS substrate binding domain FDE89_15640 PF01171 PP-loop family FDE89_15645 PF03807 NADP oxidoreductase coenzyme F420-dependent FDE89_15645 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDE89_15655 PF01612 3'-5' exonuclease FDE89_15655 PF00476 DNA polymerase family A FDE89_15655 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FDE89_15655 PF01367 5'-3' exonuclease, C-terminal SAM fold FDE89_15685 PF00437 Type II/IV secretion system protein FDE89_15690 PF02566 OsmC-like protein FDE89_15695 PF01047 MarR family FDE89_15705 PF00795 Carbon-nitrogen hydrolase FDE89_15750 PF02566 OsmC-like protein FDE89_15755 PF13545 Crp-like helix-turn-helix domain FDE89_15755 PF00027 Cyclic nucleotide-binding domain FDE89_15760 PF00248 Aldo/keto reductase family FDE89_15775 PF00709 Adenylosuccinate synthetase FDE89_15780 PF13393 Histidyl-tRNA synthetase FDE89_15785 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDE89_15785 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDE89_15790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDE89_15790 PF01411 tRNA synthetases class II (A) FDE89_15790 PF02272 DHHA1 domain FDE89_15795 PF13840 ACT domain FDE89_15795 PF00696 Amino acid kinase family FDE89_15795 PF01842 ACT domain FDE89_15800 PF02599 Global regulator protein family FDE89_15805 PF01351 Ribonuclease HII FDE89_15815 PF01292 Prokaryotic cytochrome b561 FDE89_15820 PF00962 Adenosine/AMP deaminase FDE89_15825 PF00860 Permease family FDE89_15835 PF00743 Flavin-binding monooxygenase-like FDE89_15840 PF00106 short chain dehydrogenase FDE89_15850 PF02678 Pirin FDE89_15850 PF17954 Quercetinase C-terminal cupin domain FDE89_15855 PF00440 Bacterial regulatory proteins, tetR family FDE89_15855 PF17932 Tetracyclin repressor-like, C-terminal domain FDE89_15870 PF01636 Phosphotransferase enzyme family FDE89_15880 PF13610 DDE domain FDE89_15885 PF13610 DDE domain FDE89_15900 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_15900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDE89_15905 PF00764 Arginosuccinate synthase FDE89_15910 PF01590 GAF domain FDE89_15910 PF00990 Diguanylate cyclase, GGDEF domain FDE89_15910 PF00563 EAL domain FDE89_15910 PF00360 Phytochrome region FDE89_15915 PF01979 Amidohydrolase family FDE89_15930 PF07715 TonB-dependent Receptor Plug Domain FDE89_15930 PF00593 TonB dependent receptor FDE89_15935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDE89_15935 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_15940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDE89_15940 PF00005 ABC transporter FDE89_15945 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_15945 PF12911 N-terminal TM domain of oligopeptide transport permease C FDE89_15950 PF00528 Binding-protein-dependent transport system inner membrane component FDE89_15955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDE89_15960 PF01464 Transglycosylase SLT domain FDE89_15960 PF01476 LysM domain FDE89_15960 PF01464 Transglycosylase SLT domain FDE89_15960 PF01476 LysM domain FDE89_15965 PF00929 Exonuclease FDE89_15975 PF09297 NADH pyrophosphatase zinc ribbon domain FDE89_15975 PF00293 NUDIX domain FDE89_15985 PF04972 BON domain FDE89_15990 PF02021 Uncharacterised protein family UPF0102 FDE89_15995 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDE89_16005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_16005 PF03466 LysR substrate binding domain FDE89_16010 PF01810 LysE type translocator FDE89_16020 PF13411 MerR HTH family regulatory protein FDE89_16030 PF01494 FAD binding domain FDE89_16035 PF01494 FAD binding domain FDE89_16040 PF05195 Aminopeptidase P, N-terminal domain FDE89_16040 PF00557 Metallopeptidase family M24 FDE89_16130 PF01476 LysM domain FDE89_16130 PF01551 Peptidase family M23 FDE89_16130 PF08525 Opacity-associated protein A N-terminal motif FDE89_16455 PF01812 5-formyltetrahydrofolate cyclo-ligase family FDE89_16465 PF13018 Extended Signal Peptide of Type V secretion system FDE89_16465 PF05662 Coiled stalk of trimeric autotransporter adhesin FDE89_16465 PF05658 Head domain of trimeric autotransporter adhesin FDE89_16465 PF03895 YadA-like membrane anchor domain FDE89_16470 PF05362 Lon protease (S16) C-terminal proteolytic domain FDE89_16470 PF00004 ATPase family associated with various cellular activities (AAA) FDE89_16470 PF02190 ATP-dependent protease La (LON) substrate-binding domain FDE89_16475 PF02590 Predicted SPOUT methyltransferase FDE89_16480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FDE89_16490 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDE89_16490 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDE89_16495 PF04060 Putative Fe-S cluster FDE89_16500 PF00730 HhH-GPD superfamily base excision DNA repair protein FDE89_16500 PF00633 Helix-hairpin-helix motif FDE89_16500 PF10576 Iron-sulfur binding domain of endonuclease III FDE89_16510 PF05191 Adenylate kinase, active site lid FDE89_16525 PF03717 Penicillin-binding Protein dimerisation domain FDE89_16525 PF00905 Penicillin binding protein transpeptidase domain FDE89_16540 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDE89_16545 PF01730 UreF FDE89_16550 PF05194 UreE urease accessory protein, C-terminal domain FDE89_16550 PF02814 UreE urease accessory protein, N-terminal domain FDE89_16555 PF01979 Amidohydrolase family FDE89_16555 PF00449 Urease alpha-subunit, N-terminal domain FDE89_16560 PF00699 Urease beta subunit FDE89_16565 PF00547 Urease, gamma subunit FDE89_16570 PF01774 UreD urease accessory protein FDE89_16585 PF00463 Isocitrate lyase family FDE89_16590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_16590 PF03466 LysR substrate binding domain FDE89_16595 PF03471 Transporter associated domain FDE89_16595 PF01595 Cyclin M transmembrane N-terminal domain FDE89_16595 PF00571 CBS domain FDE89_16605 PF03600 Citrate transporter FDE89_16620 PF00009 Elongation factor Tu GTP binding domain FDE89_16625 PF01507 Phosphoadenosine phosphosulfate reductase family FDE89_16645 PF14052 Capsule assembly protein Wzi FDE89_16650 PF01336 OB-fold nucleic acid binding domain FDE89_16650 PF00152 tRNA synthetases class II (D, K and N) FDE89_16665 PF00301 Rubredoxin FDE89_16670 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_16670 PF18113 Rubredoxin binding C-terminal domain FDE89_16675 PF00561 alpha/beta hydrolase fold FDE89_16680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_16680 PF03466 LysR substrate binding domain FDE89_16690 PF17941 Polyphosphate kinase C-terminal domain 1 FDE89_16690 PF13089 Polyphosphate kinase N-terminal domain FDE89_16690 PF02503 Polyphosphate kinase middle domain FDE89_16690 PF13090 Polyphosphate kinase C-terminal domain 2 FDE89_16695 PF00912 Transglycosylase FDE89_16700 PF01694 Rhomboid family FDE89_16710 PF00005 ABC transporter FDE89_16715 PF13472 GDSL-like Lipase/Acylhydrolase family FDE89_16720 PF00484 Carbonic anhydrase FDE89_16725 PF00561 alpha/beta hydrolase fold FDE89_16735 PF07715 TonB-dependent Receptor Plug Domain FDE89_16735 PF00593 TonB dependent receptor FDE89_16740 PF01106 NifU-like domain FDE89_16740 PF01521 Iron-sulphur cluster biosynthesis FDE89_16750 PF00884 Sulfatase FDE89_16755 PF03781 Sulfatase-modifying factor enzyme 1 FDE89_16770 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_16775 PF01384 Phosphate transporter family FDE89_16780 PF02574 Homocysteine S-methyltransferase FDE89_16780 PF02965 Vitamin B12 dependent methionine synthase, activation domain FDE89_16780 PF00809 Pterin binding enzyme FDE89_16780 PF02310 B12 binding domain FDE89_16780 PF02607 B12 binding domain FDE89_16785 PF02780 Transketolase, C-terminal domain FDE89_16785 PF02779 Transketolase, pyrimidine binding domain FDE89_16790 PF00456 Transketolase, thiamine diphosphate binding domain FDE89_16795 PF07690 Major Facilitator Superfamily FDE89_16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_16805 PF03466 LysR substrate binding domain FDE89_16820 PF01263 Aldose 1-epimerase FDE89_16825 PF07690 Major Facilitator Superfamily FDE89_16830 PF12833 Helix-turn-helix domain FDE89_16830 PF02311 AraC-like ligand binding domain FDE89_16835 PF04960 Glutaminase FDE89_16840 PF01327 Polypeptide deformylase FDE89_16845 PF07690 Major Facilitator Superfamily FDE89_16855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDE89_16855 PF00205 Thiamine pyrophosphate enzyme, central domain FDE89_16855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDE89_16860 PF00171 Aldehyde dehydrogenase family FDE89_16865 PF01958 Domain of unknown function DUF108 FDE89_16865 PF03447 Homoserine dehydrogenase, NAD binding domain FDE89_16875 PF12697 Alpha/beta hydrolase family FDE89_16885 PF07690 Major Facilitator Superfamily FDE89_16890 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_16890 PF14759 Reductase C-terminal FDE89_16895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDE89_16905 PF00355 Rieske [2Fe-2S] domain FDE89_16915 PF00355 Rieske [2Fe-2S] domain FDE89_16920 PF01614 Bacterial transcriptional regulator FDE89_16920 PF09339 IclR helix-turn-helix domain FDE89_16935 PF00378 Enoyl-CoA hydratase/isomerase FDE89_16945 PF00535 Glycosyl transferase family 2 FDE89_16950 PF14883 Hypothetical glycosyl hydrolase family 13 FDE89_16950 PF01522 Polysaccharide deacetylase FDE89_16955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDE89_16960 PF07152 YaeQ protein FDE89_16965 PF00375 Sodium:dicarboxylate symporter family FDE89_16970 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDE89_16970 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDE89_16980 PF03061 Thioesterase superfamily FDE89_16990 PF02028 BCCT, betaine/carnitine/choline family transporter FDE89_16995 PF02028 BCCT, betaine/carnitine/choline family transporter FDE89_17000 PF00440 Bacterial regulatory proteins, tetR family FDE89_17000 PF13977 BetI-type transcriptional repressor, C-terminal FDE89_17005 PF00171 Aldehyde dehydrogenase family FDE89_17010 PF05199 GMC oxidoreductase FDE89_17010 PF00732 GMC oxidoreductase FDE89_17015 PF06039 Malate:quinone oxidoreductase (Mqo) FDE89_17025 PF02574 Homocysteine S-methyltransferase FDE89_17030 PF13520 Amino acid permease FDE89_17055 PF01126 Heme oxygenase FDE89_17075 PF07715 TonB-dependent Receptor Plug Domain FDE89_17075 PF00593 TonB dependent receptor FDE89_17085 PF08281 Sigma-70, region 4 FDE89_17085 PF04542 Sigma-70 region 2 FDE89_17095 PF00701 Dihydrodipicolinate synthetase family FDE89_17100 PF00083 Sugar (and other) transporter FDE89_17120 PF01026 TatD related DNase FDE89_17135 PF07693 KAP family P-loop domain FDE89_17345 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FDE89_17540 PF01695 IstB-like ATP binding protein FDE89_17550 PF00145 C-5 cytosine-specific DNA methylase FDE89_17630 PF00929 Exonuclease FDE89_17700 PF07690 Major Facilitator Superfamily FDE89_17705 PF13533 Biotin-lipoyl like FDE89_17710 PF03061 Thioesterase superfamily FDE89_17715 PF00490 Delta-aminolevulinic acid dehydratase FDE89_17720 PF01266 FAD dependent oxidoreductase FDE89_17725 PF01370 NAD dependent epimerase/dehydratase family FDE89_17725 PF08338 Domain of unknown function (DUF1731) FDE89_17745 PF12320 Type 5 capsule protein repressor C-terminal domain FDE89_17745 PF00149 Calcineurin-like phosphoesterase FDE89_17755 PF01168 Alanine racemase, N-terminal domain FDE89_17760 PF00437 Type II/IV secretion system protein FDE89_17765 PF00437 Type II/IV secretion system protein FDE89_17770 PF01475 Ferric uptake regulator family FDE89_17775 PF04355 SmpA / OmlA family FDE89_17780 PF03658 RnfH family Ubiquitin FDE89_17795 PF01814 Hemerythrin HHE cation binding domain FDE89_17800 PF13230 Glutamine amidotransferases class-II FDE89_17810 PF00696 Amino acid kinase family FDE89_17815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDE89_17815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDE89_17815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDE89_17815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDE89_17820 PF00692 dUTPase FDE89_17825 PF13361 UvrD-like helicase C-terminal domain FDE89_17825 PF00580 UvrD/REP helicase N-terminal domain FDE89_17830 PF13488 Glycine zipper FDE89_17830 PF00691 OmpA family FDE89_17835 PF01553 Acyltransferase FDE89_17845 PF03775 Septum formation inhibitor MinC, C-terminal domain FDE89_17850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FDE89_17855 PF03776 Septum formation topological specificity factor MinE FDE89_17870 PF01810 LysE type translocator FDE89_17875 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FDE89_17875 PF17854 FtsK alpha domain FDE89_17875 PF09397 Ftsk gamma domain FDE89_17875 PF01580 FtsK/SpoIIIE family FDE89_17880 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDE89_17885 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FDE89_17890 PF04376 Arginine-tRNA-protein transferase, N terminus FDE89_17890 PF04377 Arginine-tRNA-protein transferase, C terminus FDE89_17895 PF00583 Acetyltransferase (GNAT) family FDE89_17910 PF03143 Elongation factor Tu C-terminal domain FDE89_17910 PF03144 Elongation factor Tu domain 2 FDE89_17910 PF00009 Elongation factor Tu GTP binding domain FDE89_17915 PF14492 Elongation Factor G, domain II FDE89_17915 PF00009 Elongation factor Tu GTP binding domain FDE89_17915 PF03144 Elongation factor Tu domain 2 FDE89_17915 PF03764 Elongation factor G, domain IV FDE89_17915 PF00679 Elongation factor G C-terminus FDE89_17920 PF00177 Ribosomal protein S7p/S5e FDE89_17925 PF00164 Ribosomal protein S12/S23 FDE89_17935 PF00109 Beta-ketoacyl synthase, N-terminal domain FDE89_17935 PF02801 Beta-ketoacyl synthase, C-terminal domain FDE89_17945 PF05726 Pirin C-terminal cupin domain FDE89_17945 PF02678 Pirin FDE89_17955 PF00795 Carbon-nitrogen hydrolase FDE89_17955 PF02540 NAD synthase FDE89_17970 PF00175 Oxidoreductase NAD-binding domain FDE89_17970 PF00111 2Fe-2S iron-sulfur cluster binding domain FDE89_17970 PF00970 Oxidoreductase FAD-binding domain FDE89_17975 PF00171 Aldehyde dehydrogenase family FDE89_17980 PF00355 Rieske [2Fe-2S] domain FDE89_17980 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDE89_17985 PF07859 alpha/beta hydrolase fold FDE89_17990 PF02028 BCCT, betaine/carnitine/choline family transporter FDE89_17995 PF00180 Isocitrate/isopropylmalate dehydrogenase FDE89_18000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_18000 PF03466 LysR substrate binding domain FDE89_18020 PF00037 4Fe-4S binding domain FDE89_18025 PF01467 Cytidylyltransferase-like FDE89_18035 PF03358 NADPH-dependent FMN reductase FDE89_18045 PF00849 RNA pseudouridylate synthase FDE89_18045 PF01479 S4 domain FDE89_18050 PF13525 Outer membrane lipoprotein FDE89_18055 PF01807 CHC2 zinc finger FDE89_18055 PF08275 DNA primase catalytic core, N-terminal domain FDE89_18055 PF08278 DNA primase DnaG DnaB-binding FDE89_18055 PF10410 DnaB-helicase binding domain of primase FDE89_18060 PF01488 Shikimate / quinate 5-dehydrogenase FDE89_18060 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FDE89_18060 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FDE89_18070 PF03550 Outer membrane lipoprotein LolB FDE89_18075 PF08544 GHMP kinases C terminal FDE89_18075 PF00288 GHMP kinases N terminal domain FDE89_18100 PF14572 Phosphoribosyl synthetase-associated domain FDE89_18100 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDE89_18105 PF01386 Ribosomal L25p family FDE89_18110 PF01195 Peptidyl-tRNA hydrolase FDE89_18115 PF02261 Aspartate decarboxylase FDE89_18130 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDE89_18140 PF08543 Phosphomethylpyrimidine kinase FDE89_18140 PF03070 TENA/THI-4/PQQC family FDE89_18140 PF02581 Thiamine monophosphate synthase FDE89_18145 PF04972 BON domain FDE89_18145 PF01476 LysM domain FDE89_18150 PF00550 Phosphopantetheine attachment site FDE89_18160 PF00698 Acyl transferase domain FDE89_18165 PF01783 Ribosomal L32p protein family FDE89_18170 PF02620 Large ribosomal RNA subunit accumulation protein YceD FDE89_18175 PF04315 Elongation factor P hydroxylase FDE89_18180 PF01300 Telomere recombination FDE89_18185 PF02616 Segregation and condensation protein ScpA FDE89_18190 PF04079 Segregation and condensation complex subunit ScpB FDE89_18195 PF01479 S4 domain FDE89_18195 PF00849 RNA pseudouridylate synthase FDE89_18210 PF00155 Aminotransferase class I and II FDE89_18215 PF00202 Aminotransferase class-III FDE89_18215 PF06968 Biotin and Thiamin Synthesis associated domain FDE89_18215 PF04055 Radical SAM superfamily FDE89_18220 PF12697 Alpha/beta hydrolase family FDE89_18220 PF08241 Methyltransferase domain FDE89_18225 PF02358 Trehalose-phosphatase FDE89_18230 PF00982 Glycosyltransferase family 20 FDE89_18235 PF07690 Major Facilitator Superfamily FDE89_18240 PF00210 Ferritin-like domain FDE89_18245 PF12826 Helix-hairpin-helix motif FDE89_18245 PF00533 BRCA1 C Terminus (BRCT) domain FDE89_18245 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FDE89_18245 PF01653 NAD-dependent DNA ligase adenylation domain FDE89_18245 PF03120 NAD-dependent DNA ligase OB-fold domain FDE89_18255 PF02463 RecF/RecN/SMC N terminal domain FDE89_18255 PF06470 SMC proteins Flexible Hinge Domain FDE89_18265 PF01925 Sulfite exporter TauE/SafE FDE89_18275 PF03309 Type III pantothenate kinase FDE89_18280 PF02978 Signal peptide binding domain FDE89_18280 PF02881 SRP54-type protein, helical bundle domain FDE89_18280 PF00448 SRP54-type protein, GTPase domain FDE89_18290 PF01207 Dihydrouridine synthase (Dus) FDE89_18325 PF00692 dUTPase FDE89_18340 PF01048 Phosphorylase superfamily FDE89_18350 PF10609 NUBPL iron-transfer P-loop NTPase FDE89_18360 PF01588 Putative tRNA binding domain FDE89_18360 PF09334 tRNA synthetases class I (M) FDE89_18385 PF13533 Biotin-lipoyl like FDE89_18390 PF00291 Pyridoxal-phosphate dependent enzyme FDE89_18405 PF05552 Conserved TM helix FDE89_18420 PF00175 Oxidoreductase NAD-binding domain FDE89_18420 PF00970 Oxidoreductase FAD-binding domain FDE89_18425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_18425 PF03466 LysR substrate binding domain FDE89_18430 PF00313 'Cold-shock' DNA-binding domain FDE89_18440 PF00361 Proton-conducting membrane transporter FDE89_18445 PF00361 Proton-conducting membrane transporter FDE89_18450 PF00361 Proton-conducting membrane transporter FDE89_18450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDE89_18455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDE89_18460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FDE89_18465 PF12838 4Fe-4S dicluster domain FDE89_18470 PF00146 NADH dehydrogenase FDE89_18475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDE89_18475 PF00384 Molybdopterin oxidoreductase FDE89_18475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FDE89_18480 PF10531 SLBB domain FDE89_18480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FDE89_18480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FDE89_18490 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FDE89_18490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FDE89_18495 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FDE89_18500 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FDE89_18505 PF17151 Periplasmic sensor domain FDE89_18505 PF00990 Diguanylate cyclase, GGDEF domain FDE89_18515 PF00672 HAMP domain FDE89_18515 PF00512 His Kinase A (phospho-acceptor) domain FDE89_18515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_18520 PF00072 Response regulator receiver domain FDE89_18520 PF00486 Transcriptional regulatory protein, C terminal FDE89_18530 PF00317 Ribonucleotide reductase, all-alpha domain FDE89_18530 PF03477 ATP cone domain FDE89_18530 PF02867 Ribonucleotide reductase, barrel domain FDE89_18540 PF00268 Ribonucleotide reductase, small chain FDE89_18550 PF00512 His Kinase A (phospho-acceptor) domain FDE89_18550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDE89_18550 PF13755 Sensor N-terminal transmembrane domain FDE89_18550 PF00672 HAMP domain FDE89_18550 PF13756 Stimulus-sensing domain FDE89_18620 PF01011 PQQ enzyme repeat FDE89_18620 PF13360 PQQ-like domain FDE89_18640 PF02567 Phenazine biosynthesis-like protein FDE89_18670 PF01613 Flavin reductase like domain FDE89_18675 PF08267 Cobalamin-independent synthase, N-terminal domain FDE89_18675 PF01717 Cobalamin-independent synthase, Catalytic domain FDE89_18685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_18685 PF03466 LysR substrate binding domain FDE89_18690 PF01810 LysE type translocator FDE89_18700 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDE89_18700 PF12833 Helix-turn-helix domain FDE89_18705 PF01546 Peptidase family M20/M25/M40 FDE89_18705 PF07687 Peptidase dimerisation domain FDE89_18715 PF03466 LysR substrate binding domain FDE89_18715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_18725 PF07690 Major Facilitator Superfamily FDE89_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_18735 PF03466 LysR substrate binding domain FDE89_18740 PF14537 Cytochrome c3 FDE89_18740 PF00890 FAD binding domain FDE89_18750 PF02515 CoA-transferase family III FDE89_18755 PF07690 Major Facilitator Superfamily FDE89_18760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDE89_18760 PF02770 Acyl-CoA dehydrogenase, middle domain FDE89_18760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDE89_18765 PF03466 LysR substrate binding domain FDE89_18765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDE89_18770 PF00107 Zinc-binding dehydrogenase FDE89_18770 PF08240 Alcohol dehydrogenase GroES-like domain FDE89_18775 PF00962 Adenosine/AMP deaminase FDE89_18805 PF02445 Quinolinate synthetase A protein FDE89_18810 PF01960 ArgJ family FDE89_18815 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDE89_18815 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDE89_18820 PF00893 Small Multidrug Resistance protein FDE89_18830 PF05275 Copper resistance protein B precursor (CopB) FDE89_18835 PF00394 Multicopper oxidase FDE89_18835 PF07731 Multicopper oxidase FDE89_18835 PF07732 Multicopper oxidase FDE89_18850 PF00834 Ribulose-phosphate 3 epimerase family FDE89_18860 PF00756 Putative esterase FDE89_18870 PF04445 Putative SAM-dependent methyltransferase FDE89_18875 PF00814 Glycoprotease family FDE89_18880 PF00132 Bacterial transferase hexapeptide (six repeats) FDE89_18885 PF00293 NUDIX domain FDE89_18930 PF00425 chorismate binding enzyme FDE89_18930 PF04715 Anthranilate synthase component I, N terminal region FDE89_18935 PF00155 Aminotransferase class I and II FDE89_18940 PF00815 Histidinol dehydrogenase FDE89_18945 PF01634 ATP phosphoribosyltransferase FDE89_18950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDE89_18955 PF01722 BolA-like protein FDE89_18960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FDE89_18965 PF04963 Sigma-54 factor, core binding domain FDE89_18965 PF00309 Sigma-54 factor, Activator interacting domain (AID) FDE89_18965 PF04552 Sigma-54, DNA binding domain FDE89_19010 PF02566 OsmC-like protein FDE89_19060 PF04304 Protein of unknown function (DUF454) FDE89_19065 PF00593 TonB dependent receptor FDE89_19065 PF07715 TonB-dependent Receptor Plug Domain FDE89_19070 PF01126 Heme oxygenase FDE89_19075 PF02796 Helix-turn-helix domain of resolvase FDE89_19075 PF00239 Resolvase, N terminal domain FDE89_19095 PF07715 TonB-dependent Receptor Plug Domain FDE89_19095 PF00593 TonB dependent receptor FDE89_19125 PF01051 Initiator Replication protein