locus-tag class description CUC60_000135 PF01726 LexA DNA binding domain CUC60_000135 PF00717 Peptidase S24-like CUC60_000190 PF08019 Phosphoethanolamine transferase EptA/EptB CUC60_000190 PF00884 Sulfatase CUC60_000560 PF01812 5-formyltetrahydrofolate cyclo-ligase family CUC60_000575 PF00004 ATPase family associated with various cellular activities (AAA) CUC60_000575 PF05362 Lon protease (S16) C-terminal proteolytic domain CUC60_000575 PF02190 ATP-dependent protease La (LON) substrate-binding domain CUC60_000580 PF02590 Predicted SPOUT methyltransferase CUC60_000585 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CUC60_000595 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CUC60_000595 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CUC60_000600 PF04060 Putative Fe-S cluster CUC60_000605 PF00633 Helix-hairpin-helix motif CUC60_000605 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC60_000605 PF10576 Iron-sulfur binding domain of endonuclease III CUC60_000615 PF05191 Adenylate kinase, active site lid CUC60_000630 PF00905 Penicillin binding protein transpeptidase domain CUC60_000630 PF03717 Penicillin-binding Protein dimerisation domain CUC60_000645 PF02492 CobW/HypB/UreG, nucleotide-binding domain CUC60_000650 PF01730 UreF CUC60_000655 PF02814 UreE urease accessory protein, N-terminal domain CUC60_000655 PF05194 UreE urease accessory protein, C-terminal domain CUC60_000665 PF00699 Urease beta subunit CUC60_000670 PF00547 Urease, gamma subunit CUC60_000675 PF01774 UreD urease accessory protein CUC60_000690 PF00463 Isocitrate lyase family CUC60_000695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_000695 PF03466 LysR substrate binding domain CUC60_000700 PF00571 CBS domain CUC60_000700 PF03471 Transporter associated domain CUC60_000700 PF01595 Cyclin M transmembrane N-terminal domain CUC60_000710 PF03600 Citrate transporter CUC60_000725 PF00009 Elongation factor Tu GTP binding domain CUC60_000730 PF01507 Phosphoadenosine phosphosulfate reductase family CUC60_000740 PF14052 Capsule assembly protein Wzi CUC60_000745 PF00152 tRNA synthetases class II (D, K and N) CUC60_000745 PF01336 OB-fold nucleic acid binding domain CUC60_000760 PF00301 Rubredoxin CUC60_000765 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_000765 PF18113 Rubredoxin binding C-terminal domain CUC60_000770 PF00561 alpha/beta hydrolase fold CUC60_000775 PF03466 LysR substrate binding domain CUC60_000775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_000795 PF17941 Polyphosphate kinase C-terminal domain 1 CUC60_000795 PF02503 Polyphosphate kinase middle domain CUC60_000795 PF13089 Polyphosphate kinase N-terminal domain CUC60_000795 PF13090 Polyphosphate kinase C-terminal domain 2 CUC60_000800 PF00912 Transglycosylase CUC60_000805 PF01694 Rhomboid family CUC60_000815 PF00005 ABC transporter CUC60_000820 PF13472 GDSL-like Lipase/Acylhydrolase family CUC60_000825 PF00484 Carbonic anhydrase CUC60_000830 PF00561 alpha/beta hydrolase fold CUC60_000840 PF07715 TonB-dependent Receptor Plug Domain CUC60_000840 PF00593 TonB dependent receptor CUC60_000845 PF01521 Iron-sulphur cluster biosynthesis CUC60_000845 PF01106 NifU-like domain CUC60_000855 PF00884 Sulfatase CUC60_000875 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_000885 PF02310 B12 binding domain CUC60_000885 PF02965 Vitamin B12 dependent methionine synthase, activation domain CUC60_000885 PF02607 B12 binding domain CUC60_000885 PF00809 Pterin binding enzyme CUC60_000885 PF02574 Homocysteine S-methyltransferase CUC60_000890 PF02780 Transketolase, C-terminal domain CUC60_000890 PF02779 Transketolase, pyrimidine binding domain CUC60_000895 PF00456 Transketolase, thiamine diphosphate binding domain CUC60_000900 PF07690 Major Facilitator Superfamily CUC60_000910 PF03466 LysR substrate binding domain CUC60_000910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_000925 PF01263 Aldose 1-epimerase CUC60_000930 PF07690 Major Facilitator Superfamily CUC60_000935 PF12833 Helix-turn-helix domain CUC60_000935 PF02311 AraC-like ligand binding domain CUC60_000940 PF04960 Glutaminase CUC60_000945 PF01327 Polypeptide deformylase CUC60_000950 PF07690 Major Facilitator Superfamily CUC60_000960 PF00205 Thiamine pyrophosphate enzyme, central domain CUC60_000960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC60_000960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC60_000965 PF00171 Aldehyde dehydrogenase family CUC60_000970 PF01958 Domain of unknown function DUF108 CUC60_000970 PF03447 Homoserine dehydrogenase, NAD binding domain CUC60_000980 PF12697 Alpha/beta hydrolase family CUC60_000990 PF07690 Major Facilitator Superfamily CUC60_000995 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_000995 PF14759 Reductase C-terminal CUC60_001000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC60_001010 PF00355 Rieske [2Fe-2S] domain CUC60_001020 PF00355 Rieske [2Fe-2S] domain CUC60_001025 PF09339 IclR helix-turn-helix domain CUC60_001025 PF01614 Bacterial transcriptional regulator CUC60_001040 PF00378 Enoyl-CoA hydratase/isomerase CUC60_001050 PF00535 Glycosyl transferase family 2 CUC60_001060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC60_001065 PF07152 YaeQ protein CUC60_001070 PF00375 Sodium:dicarboxylate symporter family CUC60_001075 PF02492 CobW/HypB/UreG, nucleotide-binding domain CUC60_001075 PF07683 Cobalamin synthesis protein cobW C-terminal domain CUC60_001085 PF03061 Thioesterase superfamily CUC60_001095 PF02028 BCCT, betaine/carnitine/choline family transporter CUC60_001100 PF02028 BCCT, betaine/carnitine/choline family transporter CUC60_001105 PF00440 Bacterial regulatory proteins, tetR family CUC60_001105 PF13977 BetI-type transcriptional repressor, C-terminal CUC60_001110 PF00171 Aldehyde dehydrogenase family CUC60_001115 PF00732 GMC oxidoreductase CUC60_001115 PF05199 GMC oxidoreductase CUC60_001120 PF06039 Malate:quinone oxidoreductase (Mqo) CUC60_001130 PF02574 Homocysteine S-methyltransferase CUC60_001135 PF13520 Amino acid permease CUC60_001160 PF01126 Heme oxygenase CUC60_001180 PF07715 TonB-dependent Receptor Plug Domain CUC60_001180 PF00593 TonB dependent receptor CUC60_001190 PF08281 Sigma-70, region 4 CUC60_001190 PF04542 Sigma-70 region 2 CUC60_001200 PF00701 Dihydrodipicolinate synthetase family CUC60_001205 PF00083 Sugar (and other) transporter CUC60_001225 PF01026 TatD related DNase CUC60_001325 PF00712 DNA polymerase III beta subunit, N-terminal domain CUC60_001325 PF02767 DNA polymerase III beta subunit, central domain CUC60_001325 PF02768 DNA polymerase III beta subunit, C-terminal domain CUC60_001365 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CUC60_001515 PF07007 Lysozyme inhibitor LprI CUC60_001560 PF01695 IstB-like ATP binding protein CUC60_001570 PF00145 C-5 cytosine-specific DNA methylase CUC60_001615 PF01381 Helix-turn-helix CUC60_001615 PF00717 Peptidase S24-like CUC60_001650 PF00929 Exonuclease CUC60_001720 PF07690 Major Facilitator Superfamily CUC60_001725 PF13533 Biotin-lipoyl like CUC60_001730 PF03061 Thioesterase superfamily CUC60_001735 PF00490 Delta-aminolevulinic acid dehydratase CUC60_001740 PF01266 FAD dependent oxidoreductase CUC60_001745 PF01370 NAD dependent epimerase/dehydratase family CUC60_001745 PF08338 Domain of unknown function (DUF1731) CUC60_001770 PF00149 Calcineurin-like phosphoesterase CUC60_001770 PF12320 Type 5 capsule protein repressor C-terminal domain CUC60_001780 PF01168 Alanine racemase, N-terminal domain CUC60_001785 PF00437 Type II/IV secretion system protein CUC60_001790 PF00437 Type II/IV secretion system protein CUC60_001795 PF01475 Ferric uptake regulator family CUC60_001800 PF04355 SmpA / OmlA family CUC60_001805 PF03658 RnfH family Ubiquitin CUC60_001820 PF01814 Hemerythrin HHE cation binding domain CUC60_001825 PF13230 Glutamine amidotransferases class-II CUC60_001835 PF00696 Amino acid kinase family CUC60_001840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC60_001840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC60_001840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC60_001840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC60_001845 PF00692 dUTPase CUC60_001850 PF13361 UvrD-like helicase C-terminal domain CUC60_001850 PF00580 UvrD/REP helicase N-terminal domain CUC60_001855 PF00691 OmpA family CUC60_001855 PF13488 Glycine zipper CUC60_001860 PF01553 Acyltransferase CUC60_001870 PF03775 Septum formation inhibitor MinC, C-terminal domain CUC60_001875 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CUC60_001880 PF03776 Septum formation topological specificity factor MinE CUC60_001895 PF01810 LysE type translocator CUC60_001900 PF01580 FtsK/SpoIIIE family CUC60_001900 PF17854 FtsK alpha domain CUC60_001900 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CUC60_001900 PF09397 Ftsk gamma domain CUC60_001905 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_001910 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CUC60_001915 PF04376 Arginine-tRNA-protein transferase, N terminus CUC60_001915 PF04377 Arginine-tRNA-protein transferase, C terminus CUC60_001920 PF00583 Acetyltransferase (GNAT) family CUC60_001940 PF03764 Elongation factor G, domain IV CUC60_001940 PF00679 Elongation factor G C-terminus CUC60_001940 PF14492 Elongation Factor G, domain II CUC60_001940 PF00009 Elongation factor Tu GTP binding domain CUC60_001940 PF03144 Elongation factor Tu domain 2 CUC60_001945 PF00177 Ribosomal protein S7p/S5e CUC60_001950 PF00164 Ribosomal protein S12/S23 CUC60_001960 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC60_001960 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC60_001970 PF05726 Pirin C-terminal cupin domain CUC60_001970 PF02678 Pirin CUC60_001980 PF02540 NAD synthase CUC60_001980 PF00795 Carbon-nitrogen hydrolase CUC60_001995 PF00970 Oxidoreductase FAD-binding domain CUC60_001995 PF00111 2Fe-2S iron-sulfur cluster binding domain CUC60_001995 PF00175 Oxidoreductase NAD-binding domain CUC60_002000 PF00171 Aldehyde dehydrogenase family CUC60_002005 PF00355 Rieske [2Fe-2S] domain CUC60_002005 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CUC60_002010 PF07859 alpha/beta hydrolase fold CUC60_002015 PF02028 BCCT, betaine/carnitine/choline family transporter CUC60_002020 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC60_002025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_002025 PF03466 LysR substrate binding domain CUC60_002045 PF00037 4Fe-4S binding domain CUC60_002050 PF01467 Cytidylyltransferase-like CUC60_002055 PF01668 SmpB protein CUC60_002060 PF03358 NADPH-dependent FMN reductase CUC60_002070 PF00849 RNA pseudouridylate synthase CUC60_002070 PF01479 S4 domain CUC60_002075 PF13525 Outer membrane lipoprotein CUC60_002080 PF08278 DNA primase DnaG DnaB-binding CUC60_002080 PF10410 DnaB-helicase binding domain of primase CUC60_002080 PF01807 CHC2 zinc finger CUC60_002080 PF08275 DNA primase catalytic core, N-terminal domain CUC60_002085 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CUC60_002085 PF01488 Shikimate / quinate 5-dehydrogenase CUC60_002085 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CUC60_002095 PF03550 Outer membrane lipoprotein LolB CUC60_002100 PF00288 GHMP kinases N terminal domain CUC60_002100 PF08544 GHMP kinases C terminal CUC60_002125 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CUC60_002125 PF14572 Phosphoribosyl synthetase-associated domain CUC60_002130 PF01386 Ribosomal L25p family CUC60_002135 PF01195 Peptidyl-tRNA hydrolase CUC60_002140 PF02261 Aspartate decarboxylase CUC60_002155 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CUC60_002165 PF08543 Phosphomethylpyrimidine kinase CUC60_002165 PF03070 TENA/THI-4/PQQC family CUC60_002165 PF02581 Thiamine monophosphate synthase CUC60_002170 PF01476 LysM domain CUC60_002170 PF04972 BON domain CUC60_002175 PF00550 Phosphopantetheine attachment site CUC60_002185 PF00698 Acyl transferase domain CUC60_002190 PF01783 Ribosomal L32p protein family CUC60_002195 PF02620 Large ribosomal RNA subunit accumulation protein YceD CUC60_002200 PF04315 Elongation factor P hydroxylase CUC60_002205 PF01300 Telomere recombination CUC60_002210 PF02616 Segregation and condensation protein ScpA CUC60_002215 PF04079 Segregation and condensation complex subunit ScpB CUC60_002220 PF00849 RNA pseudouridylate synthase CUC60_002220 PF01479 S4 domain CUC60_002235 PF00155 Aminotransferase class I and II CUC60_002240 PF00202 Aminotransferase class-III CUC60_002240 PF04055 Radical SAM superfamily CUC60_002240 PF06968 Biotin and Thiamin Synthesis associated domain CUC60_002245 PF12697 Alpha/beta hydrolase family CUC60_002245 PF08241 Methyltransferase domain CUC60_002250 PF02358 Trehalose-phosphatase CUC60_002255 PF00982 Glycosyltransferase family 20 CUC60_002260 PF07690 Major Facilitator Superfamily CUC60_002265 PF00210 Ferritin-like domain CUC60_002270 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CUC60_002270 PF03120 NAD-dependent DNA ligase OB-fold domain CUC60_002270 PF01653 NAD-dependent DNA ligase adenylation domain CUC60_002270 PF12826 Helix-hairpin-helix motif CUC60_002270 PF00533 BRCA1 C Terminus (BRCT) domain CUC60_002280 PF06470 SMC proteins Flexible Hinge Domain CUC60_002280 PF02463 RecF/RecN/SMC N terminal domain CUC60_002290 PF01925 Sulfite exporter TauE/SafE CUC60_002300 PF03309 Type III pantothenate kinase CUC60_002305 PF00448 SRP54-type protein, GTPase domain CUC60_002305 PF02881 SRP54-type protein, helical bundle domain CUC60_002305 PF02978 Signal peptide binding domain CUC60_002315 PF01207 Dihydrouridine synthase (Dus) CUC60_002350 PF00692 dUTPase CUC60_002365 PF01048 Phosphorylase superfamily CUC60_002375 PF10609 NUBPL iron-transfer P-loop NTPase CUC60_002385 PF09334 tRNA synthetases class I (M) CUC60_002385 PF01588 Putative tRNA binding domain CUC60_002410 PF13533 Biotin-lipoyl like CUC60_002415 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_002430 PF05552 Conserved TM helix CUC60_002445 PF00970 Oxidoreductase FAD-binding domain CUC60_002445 PF00175 Oxidoreductase NAD-binding domain CUC60_002450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_002450 PF03466 LysR substrate binding domain CUC60_002455 PF00313 'Cold-shock' DNA-binding domain CUC60_002465 PF00361 Proton-conducting membrane transporter CUC60_002470 PF00361 Proton-conducting membrane transporter CUC60_002475 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CUC60_002475 PF00361 Proton-conducting membrane transporter CUC60_002480 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CUC60_002485 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CUC60_002490 PF12838 4Fe-4S dicluster domain CUC60_002495 PF00146 NADH dehydrogenase CUC60_002500 PF00384 Molybdopterin oxidoreductase CUC60_002500 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CUC60_002500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CUC60_002505 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CUC60_002505 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CUC60_002505 PF10531 SLBB domain CUC60_002520 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CUC60_002525 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CUC60_002530 PF17151 Periplasmic sensor domain CUC60_002530 PF00990 Diguanylate cyclase, GGDEF domain CUC60_002540 PF00672 HAMP domain CUC60_002540 PF00512 His Kinase A (phospho-acceptor) domain CUC60_002540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_002545 PF00072 Response regulator receiver domain CUC60_002545 PF00486 Transcriptional regulatory protein, C terminal CUC60_002555 PF03477 ATP cone domain CUC60_002555 PF02867 Ribonucleotide reductase, barrel domain CUC60_002555 PF00317 Ribonucleotide reductase, all-alpha domain CUC60_002565 PF00268 Ribonucleotide reductase, small chain CUC60_002645 PF01011 PQQ enzyme repeat CUC60_002645 PF13360 PQQ-like domain CUC60_002665 PF02567 Phenazine biosynthesis-like protein CUC60_002695 PF01613 Flavin reductase like domain CUC60_002700 PF08267 Cobalamin-independent synthase, N-terminal domain CUC60_002700 PF01717 Cobalamin-independent synthase, Catalytic domain CUC60_002710 PF03466 LysR substrate binding domain CUC60_002710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_002715 PF01810 LysE type translocator CUC60_002725 PF12833 Helix-turn-helix domain CUC60_002725 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CUC60_002730 PF01546 Peptidase family M20/M25/M40 CUC60_002730 PF07687 Peptidase dimerisation domain CUC60_002740 PF03466 LysR substrate binding domain CUC60_002740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_002750 PF07690 Major Facilitator Superfamily CUC60_002760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_002760 PF03466 LysR substrate binding domain CUC60_002775 PF02515 CoA-transferase family III CUC60_002780 PF07690 Major Facilitator Superfamily CUC60_002785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_002785 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_002785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_002790 PF03466 LysR substrate binding domain CUC60_002790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_002795 PF00107 Zinc-binding dehydrogenase CUC60_002795 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_002800 PF00962 Adenosine/AMP deaminase CUC60_002825 PF02445 Quinolinate synthetase A protein CUC60_002830 PF01960 ArgJ family CUC60_002835 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC60_002835 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUC60_002860 PF05275 Copper resistance protein B precursor (CopB) CUC60_002865 PF00394 Multicopper oxidase CUC60_002865 PF07731 Multicopper oxidase CUC60_002865 PF07732 Multicopper oxidase CUC60_002880 PF00834 Ribulose-phosphate 3 epimerase family CUC60_002890 PF00756 Putative esterase CUC60_002900 PF04445 Putative SAM-dependent methyltransferase CUC60_002905 PF00814 Glycoprotease family CUC60_002910 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_002915 PF00293 NUDIX domain CUC60_002955 PF04715 Anthranilate synthase component I, N terminal region CUC60_002955 PF00425 chorismate binding enzyme CUC60_002960 PF00155 Aminotransferase class I and II CUC60_002965 PF00815 Histidinol dehydrogenase CUC60_002970 PF01634 ATP phosphoribosyltransferase CUC60_002975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC60_002980 PF01722 BolA-like protein CUC60_002985 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CUC60_002990 PF04552 Sigma-54, DNA binding domain CUC60_002990 PF00309 Sigma-54 factor, Activator interacting domain (AID) CUC60_002990 PF04963 Sigma-54 factor, core binding domain CUC60_003035 PF00795 Carbon-nitrogen hydrolase CUC60_003045 PF01047 MarR family CUC60_003050 PF02566 OsmC-like protein CUC60_003055 PF00437 Type II/IV secretion system protein CUC60_003075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CUC60_003075 PF00476 DNA polymerase family A CUC60_003075 PF01367 5'-3' exonuclease, C-terminal SAM fold CUC60_003075 PF01612 3'-5' exonuclease CUC60_003085 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC60_003085 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC60_003090 PF11734 TilS substrate C-terminal domain CUC60_003090 PF01171 PP-loop family CUC60_003090 PF09179 TilS substrate binding domain CUC60_003095 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CUC60_003100 PF02541 Ppx/GppA phosphatase family CUC60_003105 PF00085 Thioredoxin CUC60_003110 PF07497 Rho termination factor, RNA-binding domain CUC60_003110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC60_003110 PF07498 Rho termination factor, N-terminal domain CUC60_003125 PF00216 Bacterial DNA-binding protein CUC60_003135 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CUC60_003135 PF01409 tRNA synthetases class II core domain (F) CUC60_003155 PF00453 Ribosomal protein L20 CUC60_003160 PF01632 Ribosomal protein L35 CUC60_003165 PF07690 Major Facilitator Superfamily CUC60_003170 PF09335 SNARE associated Golgi protein CUC60_003175 PF00043 Glutathione S-transferase, C-terminal domain CUC60_003175 PF02798 Glutathione S-transferase, N-terminal domain CUC60_003185 PF00707 Translation initiation factor IF-3, C-terminal domain CUC60_003185 PF05198 Translation initiation factor IF-3, N-terminal domain CUC60_003190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC60_003190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC60_003190 PF02824 TGS domain CUC60_003190 PF03129 Anticodon binding domain CUC60_003195 PF13193 AMP-binding enzyme C-terminal domain CUC60_003195 PF00501 AMP-binding enzyme CUC60_003200 PF04751 Protein of unknown function (DUF615) CUC60_003205 PF00381 PTS HPr component phosphorylation site CUC60_003210 PF03668 P-loop ATPase protein family CUC60_003215 PF02569 Pantoate-beta-alanine ligase CUC60_003220 PF02548 Ketopantoate hydroxymethyltransferase CUC60_003225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CUC60_003230 PF01743 Poly A polymerase head domain CUC60_003230 PF12626 Polymerase A arginine-rich C-terminus CUC60_003230 PF12627 Probable RNA and SrmB- binding site of polymerase A CUC60_003240 PF03819 MazG nucleotide pyrophosphohydrolase domain CUC60_003250 PF04607 Region found in RelA / SpoT proteins CUC60_003250 PF02824 TGS domain CUC60_003250 PF13291 ACT domain CUC60_003255 PF05958 tRNA (Uracil-5-)-methyltransferase CUC60_003265 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_003270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CUC60_003270 PF00072 Response regulator receiver domain CUC60_003270 PF01627 Hpt domain CUC60_003270 PF00512 His Kinase A (phospho-acceptor) domain CUC60_003270 PF00672 HAMP domain CUC60_003270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_003275 PF00378 Enoyl-CoA hydratase/isomerase CUC60_003280 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CUC60_003280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CUC60_003285 PF01261 Xylose isomerase-like TIM barrel CUC60_003295 PF00106 short chain dehydrogenase CUC60_003300 PF02233 NAD(P) transhydrogenase beta subunit CUC60_003305 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CUC60_003310 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CUC60_003310 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CUC60_003315 PF00892 EamA-like transporter family CUC60_003325 PF07690 Major Facilitator Superfamily CUC60_003330 PF01207 Dihydrouridine synthase (Dus) CUC60_003340 PF03466 LysR substrate binding domain CUC60_003340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_003350 PF00899 ThiF family CUC60_003360 PF00694 Aconitase C-terminal domain CUC60_003360 PF00330 Aconitase family (aconitate hydratase) CUC60_003365 PF01026 TatD related DNase CUC60_003380 PF16658 Class II release factor RF3, C-terminal domain CUC60_003380 PF03144 Elongation factor Tu domain 2 CUC60_003380 PF00009 Elongation factor Tu GTP binding domain CUC60_003405 PF03707 Bacterial signalling protein N terminal repeat CUC60_003405 PF00990 Diguanylate cyclase, GGDEF domain CUC60_003405 PF00563 EAL domain CUC60_003410 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CUC60_003410 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CUC60_003415 PF10369 Small subunit of acetolactate synthase CUC60_003420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC60_003420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC60_003420 PF00205 Thiamine pyrophosphate enzyme, central domain CUC60_003430 PF09334 tRNA synthetases class I (M) CUC60_003430 PF13603 Leucyl-tRNA synthetase, Domain 2 CUC60_003430 PF00133 tRNA synthetases class I (I, L, M and V) CUC60_003430 PF08264 Anticodon-binding domain of tRNA CUC60_003445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC60_003450 PF02687 FtsX-like permease family CUC60_003450 PF12704 MacB-like periplasmic core domain CUC60_003450 PF00005 ABC transporter CUC60_003455 PF02321 Outer membrane efflux protein CUC60_003470 PF00929 Exonuclease CUC60_003475 PF03193 RsgA GTPase CUC60_003485 PF00462 Glutaredoxin CUC60_003490 PF02556 Preprotein translocase subunit SecB CUC60_003505 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC60_003505 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC60_003520 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC60_003520 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC60_003530 PF04820 Tryptophan halogenase CUC60_003550 PF00221 Aromatic amino acid lyase CUC60_003575 PF00550 Phosphopantetheine attachment site CUC60_003580 PF00550 Phosphopantetheine attachment site CUC60_003595 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CUC60_003595 PF01926 50S ribosome-binding GTPase CUC60_003600 PF13360 PQQ-like domain CUC60_003610 PF13393 Histidyl-tRNA synthetase CUC60_003610 PF03129 Anticodon binding domain CUC60_003615 PF04551 GcpE protein CUC60_003620 PF13464 Domain of unknown function (DUF4115) CUC60_003630 PF04055 Radical SAM superfamily CUC60_003635 PF00334 Nucleoside diphosphate kinase CUC60_003640 PF04384 Iron-sulphur cluster assembly CUC60_003645 PF01569 PAP2 superfamily CUC60_003650 PF00534 Glycosyl transferases group 1 CUC60_003650 PF13439 Glycosyltransferase Family 4 CUC60_003655 PF00595 PDZ domain CUC60_003655 PF03572 Peptidase family S41 CUC60_003655 PF17804 Tail specific protease N-terminal domain CUC60_003655 PF11818 C-terminal domain of tail specific protease (DUF3340) CUC60_003660 PF00933 Glycosyl hydrolase family 3 N terminal domain CUC60_003670 PF00561 alpha/beta hydrolase fold CUC60_003675 PF00171 Aldehyde dehydrogenase family CUC60_003680 PF00171 Aldehyde dehydrogenase family CUC60_003685 PF01202 Shikimate kinase CUC60_003690 PF02447 GntP family permease CUC60_003700 PF00920 Dehydratase family CUC60_003705 PF00871 Acetokinase family CUC60_003710 PF07085 DRTGG domain CUC60_003710 PF01515 Phosphate acetyl/butaryl transferase CUC60_003715 PF05683 Fumarase C-terminus CUC60_003715 PF05681 Fumarate hydratase (Fumerase) CUC60_003730 PF07724 AAA domain (Cdc48 subfamily) CUC60_003730 PF10431 C-terminal, D2-small domain, of ClpB protein CUC60_003730 PF06689 ClpX C4-type zinc finger CUC60_003735 PF00574 Clp protease CUC60_003740 PF05697 Bacterial trigger factor protein (TF) CUC60_003740 PF05698 Bacterial trigger factor protein (TF) C-terminus CUC60_003740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC60_003745 PF07715 TonB-dependent Receptor Plug Domain CUC60_003745 PF00593 TonB dependent receptor CUC60_003750 PF13640 2OG-Fe(II) oxygenase superfamily CUC60_003750 PF18331 PKHD-type hydroxylase C-terminal domain CUC60_003755 PF00682 HMGL-like CUC60_003755 PF08502 LeuA allosteric (dimerisation) domain CUC60_003760 PF00561 alpha/beta hydrolase fold CUC60_003765 PF07021 Methionine biosynthesis protein MetW CUC60_003765 PF00561 alpha/beta hydrolase fold CUC60_003775 PF01725 Ham1 family CUC60_003785 PF02416 mttA/Hcf106 family CUC60_003790 PF02416 mttA/Hcf106 family CUC60_003795 PF00902 Sec-independent protein translocase protein (TatC) CUC60_003815 PF01790 Prolipoprotein diacylglyceryl transferase CUC60_003830 PF00303 Thymidylate synthase CUC60_003835 PF00186 Dihydrofolate reductase CUC60_003845 PF01625 Peptide methionine sulfoxide reductase CUC60_003855 PF01618 MotA/TolQ/ExbB proton channel family CUC60_003865 PF01842 ACT domain CUC60_003865 PF00551 Formyl transferase CUC60_003875 PF00171 Aldehyde dehydrogenase family CUC60_003880 PF00830 Ribosomal L28 family CUC60_003885 PF00471 Ribosomal protein L33 CUC60_003890 PF02254 TrkA-N domain CUC60_003890 PF00999 Sodium/hydrogen exchanger family CUC60_003910 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CUC60_003915 PF00580 UvrD/REP helicase N-terminal domain CUC60_003915 PF13361 UvrD-like helicase C-terminal domain CUC60_003930 PF01131 DNA topoisomerase CUC60_003930 PF01396 Topoisomerase DNA binding C4 zinc finger CUC60_003930 PF01751 Toprim domain CUC60_003930 PF08272 Topoisomerase I zinc-ribbon-like CUC60_003940 PF01638 HxlR-like helix-turn-helix CUC60_003945 PF00107 Zinc-binding dehydrogenase CUC60_003945 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_003960 PF01810 LysE type translocator CUC60_003965 PF03279 Bacterial lipid A biosynthesis acyltransferase CUC60_003975 PF00375 Sodium:dicarboxylate symporter family CUC60_003985 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUC60_003985 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC60_004005 PF01416 tRNA pseudouridine synthase CUC60_004015 PF01176 Translation initiation factor 1A / IF-1 CUC60_004030 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC60_004045 PF00330 Aconitase family (aconitate hydratase) CUC60_004055 PF03466 LysR substrate binding domain CUC60_004055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_004075 PF00293 NUDIX domain CUC60_004080 PF02896 PEP-utilising enzyme, TIM barrel domain CUC60_004080 PF01590 GAF domain CUC60_004080 PF00391 PEP-utilising enzyme, mobile domain CUC60_004080 PF05524 PEP-utilising enzyme, N-terminal CUC60_004085 PF00141 Peroxidase CUC60_004090 PF12706 Beta-lactamase superfamily domain CUC60_004095 PF03466 LysR substrate binding domain CUC60_004095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_004105 PF02798 Glutathione S-transferase, N-terminal domain CUC60_004110 PF13280 WYL domain CUC60_004110 PF08279 HTH domain CUC60_004115 PF13419 Haloacid dehalogenase-like hydrolase CUC60_004120 PF01479 S4 domain CUC60_004120 PF00849 RNA pseudouridylate synthase CUC60_004130 PF12111 Polyribonucleotide phosphorylase C terminal CUC60_004130 PF10150 Ribonuclease E/G family CUC60_004130 PF00575 S1 RNA binding domain CUC60_004135 PF13193 AMP-binding enzyme C-terminal domain CUC60_004135 PF00501 AMP-binding enzyme CUC60_004150 PF03466 LysR substrate binding domain CUC60_004150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_004160 PF04055 Radical SAM superfamily CUC60_004160 PF06969 HemN C-terminal domain CUC60_004170 PF01554 MatE CUC60_004175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_004175 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_004175 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CUC60_004180 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CUC60_004180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_004185 PF03109 ABC1 family CUC60_004190 PF01197 Ribosomal protein L31 CUC60_004205 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CUC60_004225 PF03884 DNA gyrase inhibitor YacG CUC60_004230 PF00753 Metallo-beta-lactamase superfamily CUC60_004245 PF01177 Asp/Glu/Hydantoin racemase CUC60_004260 PF01206 Sulfurtransferase TusA CUC60_004265 PF00571 CBS domain CUC60_004265 PF03471 Transporter associated domain CUC60_004270 PF00795 Carbon-nitrogen hydrolase CUC60_004275 PF01588 Putative tRNA binding domain CUC60_004285 PF07963 Prokaryotic N-terminal methylation motif CUC60_004285 PF08334 Type II secretion system (T2SS), protein G CUC60_004290 PF00482 Type II secretion system (T2SS), protein F CUC60_004295 PF18074 Primosomal protein N C-terminal domain CUC60_004295 PF00270 DEAD/DEAH box helicase CUC60_004295 PF00271 Helicase conserved C-terminal domain CUC60_004295 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CUC60_004295 PF17764 3′ DNA-binding domain (3′BD) CUC60_004300 PF02254 TrkA-N domain CUC60_004300 PF00999 Sodium/hydrogen exchanger family CUC60_004305 PF01430 Hsp33 protein CUC60_004315 PF00226 DnaJ domain CUC60_004315 PF01556 DnaJ C terminal domain CUC60_004325 PF01544 CorA-like Mg2+ transporter protein CUC60_004330 PF03725 3' exoribonuclease family, domain 2 CUC60_004330 PF01138 3' exoribonuclease family, domain 1 CUC60_004330 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CUC60_004330 PF00013 KH domain CUC60_004330 PF00575 S1 RNA binding domain CUC60_004335 PF00312 Ribosomal protein S15 CUC60_004345 PF13538 UvrD-like helicase C-terminal domain CUC60_004350 PF12705 PD-(D/E)XK nuclease superfamily CUC60_004350 PF13361 UvrD-like helicase C-terminal domain CUC60_004350 PF00580 UvrD/REP helicase N-terminal domain CUC60_004355 PF17946 RecC C-terminal domain CUC60_004365 PF03976 Polyphosphate kinase 2 (PPK2) CUC60_004375 PF01209 ubiE/COQ5 methyltransferase family CUC60_004385 PF03109 ABC1 family CUC60_004390 PF01494 FAD binding domain CUC60_004395 PF01502 Phosphoribosyl-AMP cyclohydrolase CUC60_004410 PF00361 Proton-conducting membrane transporter CUC60_004410 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CUC60_004410 PF13244 Domain of unknown function (DUF4040) CUC60_004410 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CUC60_004415 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CUC60_004420 PF00361 Proton-conducting membrane transporter CUC60_004430 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CUC60_004440 PF02033 Ribosome-binding factor A CUC60_004445 PF04760 Translation initiation factor IF-2, N-terminal region CUC60_004445 PF08364 Bacterial translation initiation factor IF-2 associated region CUC60_004445 PF11987 Translation-initiation factor 2 CUC60_004445 PF00009 Elongation factor Tu GTP binding domain CUC60_004450 PF08529 NusA N-terminal domain CUC60_004450 PF13184 NusA-like KH domain CUC60_004450 PF00575 S1 RNA binding domain CUC60_004455 PF02576 RimP N-terminal domain CUC60_004455 PF17384 RimP C-terminal SH3 domain CUC60_004475 PF03840 Preprotein translocase SecG subunit CUC60_004480 PF00121 Triosephosphate isomerase CUC60_004485 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CUC60_004485 PF00437 Type II/IV secretion system protein CUC60_004490 PF00482 Type II secretion system (T2SS), protein F CUC60_004495 PF06750 Bacterial Peptidase A24 N-terminal domain CUC60_004495 PF01478 Type IV leader peptidase family CUC60_004500 PF01121 Dephospho-CoA kinase CUC60_004510 PF08032 RNA 2'-O ribose methyltransferase substrate binding CUC60_004510 PF00588 SpoU rRNA Methylase family CUC60_004515 PF06865 Pyrimidine/purine nucleoside phosphorylase CUC60_004525 PF02463 RecF/RecN/SMC N terminal domain CUC60_004530 PF02622 Uncharacterized ACR, COG1678 CUC60_004535 PF03652 Holliday junction resolvase CUC60_004540 PF13533 Biotin-lipoyl like CUC60_004565 PF02805 Metal binding domain of Ada CUC60_004565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC60_004565 PF12833 Helix-turn-helix domain CUC60_004565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUC60_004570 PF01066 CDP-alcohol phosphatidyltransferase CUC60_004580 PF01541 GIY-YIG catalytic domain CUC60_004580 PF02151 UvrB/uvrC motif CUC60_004580 PF08459 UvrC Helix-hairpin-helix N-terminal CUC60_004605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CUC60_004605 PF00378 Enoyl-CoA hydratase/isomerase CUC60_004605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CUC60_004610 PF00108 Thiolase, N-terminal domain CUC60_004610 PF02803 Thiolase, C-terminal domain CUC60_004630 PF09278 MerR, DNA binding CUC60_004630 PF00376 MerR family regulatory protein CUC60_004640 PF01323 DSBA-like thioredoxin domain CUC60_004655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_004655 PF00183 Hsp90 protein CUC60_004670 PF03553 Na+/H+ antiporter family CUC60_004670 PF13726 Na+-H+ antiporter family CUC60_004675 PF00561 alpha/beta hydrolase fold CUC60_004695 PF04997 RNA polymerase Rpb1, domain 1 CUC60_004695 PF00623 RNA polymerase Rpb1, domain 2 CUC60_004695 PF04983 RNA polymerase Rpb1, domain 3 CUC60_004695 PF05000 RNA polymerase Rpb1, domain 4 CUC60_004695 PF04998 RNA polymerase Rpb1, domain 5 CUC60_004700 PF10385 RNA polymerase beta subunit external 1 domain CUC60_004700 PF04565 RNA polymerase Rpb2, domain 3 CUC60_004700 PF00562 RNA polymerase Rpb2, domain 6 CUC60_004700 PF04561 RNA polymerase Rpb2, domain 2 CUC60_004700 PF04563 RNA polymerase beta subunit CUC60_004700 PF04560 RNA polymerase Rpb2, domain 7 CUC60_004705 PF00542 Ribosomal protein L7/L12 C-terminal domain CUC60_004705 PF16320 Ribosomal protein L7/L12 dimerisation domain CUC60_004710 PF00466 Ribosomal protein L10 CUC60_004715 PF00687 Ribosomal protein L1p/L10e family CUC60_004720 PF03946 Ribosomal protein L11, N-terminal domain CUC60_004720 PF00298 Ribosomal protein L11, RNA binding domain CUC60_004725 PF00467 KOW motif CUC60_004725 PF02357 Transcription termination factor nusG CUC60_004730 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CUC60_004740 PF00009 Elongation factor Tu GTP binding domain CUC60_004740 PF03144 Elongation factor Tu domain 2 CUC60_004740 PF03143 Elongation factor Tu C-terminal domain CUC60_004765 PF00425 chorismate binding enzyme CUC60_004765 PF04715 Anthranilate synthase component I, N terminal region CUC60_004770 PF13419 Haloacid dehalogenase-like hydrolase CUC60_004775 PF00498 FHA domain CUC60_004775 PF12401 Protein of unknown function (DUF2662) CUC60_004780 PF00263 Bacterial type II and III secretion system protein CUC60_004780 PF03958 Bacterial type II/III secretion system short domain CUC60_004795 PF00816 H-NS histone family CUC60_004820 PF03900 Porphobilinogen deaminase, C-terminal domain CUC60_004820 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CUC60_004825 PF00072 Response regulator receiver domain CUC60_004825 PF04397 LytTr DNA-binding domain CUC60_004830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_004830 PF06580 Histidine kinase CUC60_004830 PF07694 5TMR of 5TMR-LYT CUC60_004835 PF00206 Lyase CUC60_004835 PF14698 Argininosuccinate lyase C-terminal CUC60_004840 PF04362 Bacterial Fe(2+) trafficking CUC60_004845 PF01895 PhoU domain CUC60_004850 PF02321 Outer membrane efflux protein CUC60_004855 PF00892 EamA-like transporter family CUC60_004870 PF01964 Radical SAM ThiC family CUC60_004870 PF13667 ThiC-associated domain CUC60_004875 PF00293 NUDIX domain CUC60_004880 PF00149 Calcineurin-like phosphoesterase CUC60_004885 PF01258 Prokaryotic dksA/traR C4-type zinc finger CUC60_004890 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC60_004895 PF01098 Cell cycle protein CUC60_004900 PF02875 Mur ligase family, glutamate ligase domain CUC60_004900 PF08245 Mur ligase middle domain CUC60_004920 PF00589 Phage integrase family CUC60_004920 PF02899 Phage integrase, N-terminal SAM-like domain CUC60_004925 PF13098 Thioredoxin-like domain CUC60_004925 PF10411 Disulfide bond isomerase protein N-terminus CUC60_004930 PF03447 Homoserine dehydrogenase, NAD binding domain CUC60_004930 PF01842 ACT domain CUC60_004930 PF00742 Homoserine dehydrogenase CUC60_004935 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_004940 PF00768 D-alanyl-D-alanine carboxypeptidase CUC60_004945 PF00196 Bacterial regulatory proteins, luxR family CUC60_004945 PF00072 Response regulator receiver domain CUC60_004950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_004950 PF00512 His Kinase A (phospho-acceptor) domain CUC60_004955 PF00072 Response regulator receiver domain CUC60_004955 PF00158 Sigma-54 interaction domain CUC60_004955 PF02954 Bacterial regulatory protein, Fis family CUC60_004960 PF03572 Peptidase family S41 CUC60_004960 PF00595 PDZ domain CUC60_004980 PF02789 Cytosol aminopeptidase family, N-terminal domain CUC60_004980 PF00883 Cytosol aminopeptidase family, catalytic domain CUC60_005000 PF00677 Lumazine binding domain CUC60_005010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC60_005010 PF01872 RibD C-terminal domain CUC60_005015 PF03477 ATP cone domain CUC60_005020 PF00909 Ammonium Transporter Family CUC60_005025 PF00543 Nitrogen regulatory protein P-II CUC60_005035 PF13335 Magnesium chelatase, subunit ChlI C-terminal CUC60_005035 PF01078 Magnesium chelatase, subunit ChlI CUC60_005045 PF01636 Phosphotransferase enzyme family CUC60_005050 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CUC60_005070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC60_005070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC60_005070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC60_005070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC60_005090 PF13614 AAA domain CUC60_005095 PF08535 KorB domain CUC60_005095 PF06613 KorB C-terminal beta-barrel domain CUC60_005095 PF02195 ParB-like nuclease domain CUC60_005160 PF00589 Phage integrase family CUC60_005160 PF13495 Phage integrase, N-terminal SAM-like domain CUC60_005170 PF07690 Major Facilitator Superfamily CUC60_005180 PF00893 Small Multidrug Resistance protein CUC60_005185 PF00809 Pterin binding enzyme CUC60_005310 PF13610 DDE domain CUC60_005320 PF00239 Resolvase, N terminal domain CUC60_005320 PF02796 Helix-turn-helix domain of resolvase CUC60_005345 PF02909 Tetracyclin repressor-like, C-terminal domain CUC60_005345 PF00440 Bacterial regulatory proteins, tetR family CUC60_005350 PF07690 Major Facilitator Superfamily CUC60_005395 PF00582 Universal stress protein family CUC60_005440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC60_005440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC60_005440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC60_005440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC60_005445 PF00809 Pterin binding enzyme CUC60_005465 PF00665 Integrase core domain CUC60_005490 PF00589 Phage integrase family CUC60_005490 PF02899 Phage integrase, N-terminal SAM-like domain CUC60_005525 PF00582 Universal stress protein family CUC60_005545 PF00665 Integrase core domain CUC60_005555 PF01078 Magnesium chelatase, subunit ChlI CUC60_005555 PF13335 Magnesium chelatase, subunit ChlI C-terminal CUC60_005560 PF00392 Bacterial regulatory proteins, gntR family CUC60_005560 PF00155 Aminotransferase class I and II CUC60_005570 PF00701 Dihydrodipicolinate synthetase family CUC60_005580 PF03573 outer membrane porin, OprD family CUC60_005585 PF00719 Inorganic pyrophosphatase CUC60_005600 PF00501 AMP-binding enzyme CUC60_005600 PF13193 AMP-binding enzyme C-terminal domain CUC60_005605 PF00521 DNA gyrase/topoisomerase IV, subunit A CUC60_005605 PF03989 DNA gyrase C-terminal domain, beta-propeller CUC60_005610 PF07690 Major Facilitator Superfamily CUC60_005615 PF03458 UPF0126 domain CUC60_005620 PF02810 SEC-C motif CUC60_005625 PF03741 Integral membrane protein TerC family CUC60_005625 PF03471 Transporter associated domain CUC60_005630 PF03641 Possible lysine decarboxylase CUC60_005635 PF07690 Major Facilitator Superfamily CUC60_005645 PF00817 impB/mucB/samB family CUC60_005645 PF11799 impB/mucB/samB family C-terminal domain CUC60_005645 PF11798 IMS family HHH motif CUC60_005660 PF08497 Radical SAM N-terminal CUC60_005660 PF11842 Domain of unknown function (DUF3362) CUC60_005660 PF04055 Radical SAM superfamily CUC60_005680 PF03358 NADPH-dependent FMN reductase CUC60_005690 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_005725 PF00440 Bacterial regulatory proteins, tetR family CUC60_005750 PF01327 Polypeptide deformylase CUC60_005760 PF02481 DNA recombination-mediator protein A CUC60_005760 PF17782 DprA winged helix domain CUC60_005765 PF01300 Telomere recombination CUC60_005770 PF00892 EamA-like transporter family CUC60_005775 PF00440 Bacterial regulatory proteins, tetR family CUC60_005780 PF07690 Major Facilitator Superfamily CUC60_005790 PF00255 Glutathione peroxidase CUC60_005800 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CUC60_005805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC60_005805 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC60_005810 PF00231 ATP synthase CUC60_005815 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC60_005815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC60_005815 PF00306 ATP synthase alpha/beta chain, C terminal domain CUC60_005820 PF00213 ATP synthase delta (OSCP) subunit CUC60_005825 PF00430 ATP synthase B/B' CF(0) CUC60_005830 PF00137 ATP synthase subunit C CUC60_005835 PF00119 ATP synthase A chain CUC60_005860 PF00950 ABC 3 transport family CUC60_005865 PF01810 LysE type translocator CUC60_005870 PF04261 Dyp-type peroxidase family CUC60_005875 PF00390 Malic enzyme, N-terminal domain CUC60_005875 PF03949 Malic enzyme, NAD binding domain CUC60_005880 PF00750 tRNA synthetases class I (R) CUC60_005880 PF05746 DALR anticodon binding domain CUC60_005880 PF03485 Arginyl tRNA synthetase N terminal domain CUC60_005900 PF05726 Pirin C-terminal cupin domain CUC60_005900 PF02678 Pirin CUC60_005910 PF03551 Transcriptional regulator PadR-like family CUC60_005915 PF01909 Nucleotidyltransferase domain CUC60_005915 PF13427 Domain of unknown function (DUF4111) CUC60_005920 PF00958 GMP synthase C terminal domain CUC60_005920 PF00117 Glutamine amidotransferase class-I CUC60_005920 PF02540 NAD synthase CUC60_005930 PF07681 DoxX CUC60_005935 PF09335 SNARE associated Golgi protein CUC60_005950 PF13614 AAA domain CUC60_005960 PF01722 BolA-like protein CUC60_005975 PF01648 4'-phosphopantetheinyl transferase superfamily CUC60_005980 PF12697 Alpha/beta hydrolase family CUC60_005995 PF00975 Thioesterase domain CUC60_005995 PF00550 Phosphopantetheine attachment site CUC60_005995 PF00668 Condensation domain CUC60_005995 PF00501 AMP-binding enzyme CUC60_005995 PF13193 AMP-binding enzyme C-terminal domain CUC60_006000 PF00975 Thioesterase domain CUC60_006000 PF14765 Polyketide synthase dehydratase CUC60_006000 PF00550 Phosphopantetheine attachment site CUC60_006000 PF08242 Methyltransferase domain CUC60_006000 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC60_006000 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC60_006000 PF16197 Ketoacyl-synthetase C-terminal extension CUC60_006005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_006005 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_006005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_006010 PF00501 AMP-binding enzyme CUC60_006015 PF00196 Bacterial regulatory proteins, luxR family CUC60_006015 PF03472 Autoinducer binding domain CUC60_006025 PF00765 Autoinducer synthase CUC60_006035 PF00378 Enoyl-CoA hydratase/isomerase CUC60_006040 PF00378 Enoyl-CoA hydratase/isomerase CUC60_006045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_006045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_006045 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_006050 PF00501 AMP-binding enzyme CUC60_006050 PF13193 AMP-binding enzyme C-terminal domain CUC60_006055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CUC60_006055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CUC60_006060 PF00171 Aldehyde dehydrogenase family CUC60_006070 PF00324 Amino acid permease CUC60_006075 PF00324 Amino acid permease CUC60_006080 PF01042 Endoribonuclease L-PSP CUC60_006085 PF00842 Alanine racemase, C-terminal domain CUC60_006085 PF01168 Alanine racemase, N-terminal domain CUC60_006090 PF01266 FAD dependent oxidoreductase CUC60_006095 PF01037 Lrp/AsnC ligand binding domain CUC60_006105 PF07715 TonB-dependent Receptor Plug Domain CUC60_006105 PF00593 TonB dependent receptor CUC60_006120 PF00849 RNA pseudouridylate synthase CUC60_006175 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC60_006175 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC60_006180 PF00665 Integrase core domain CUC60_006180 PF13276 HTH-like domain CUC60_006180 PF13333 Integrase core domain CUC60_006220 PF00330 Aconitase family (aconitate hydratase) CUC60_006220 PF00694 Aconitase C-terminal domain CUC60_006225 PF00285 Citrate synthase, C-terminal domain CUC60_006235 PF07729 FCD domain CUC60_006235 PF00392 Bacterial regulatory proteins, gntR family CUC60_006245 PF00155 Aminotransferase class I and II CUC60_006250 PF09330 D-lactate dehydrogenase, membrane binding CUC60_006250 PF01565 FAD binding domain CUC60_006255 PF01070 FMN-dependent dehydrogenase CUC60_006260 PF00392 Bacterial regulatory proteins, gntR family CUC60_006260 PF07729 FCD domain CUC60_006265 PF02652 L-lactate permease CUC60_006270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC60_006270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC60_006270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC60_006270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC60_006275 PF16363 GDP-mannose 4,6 dehydratase CUC60_006285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CUC60_006285 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CUC60_006285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CUC60_006290 PF00483 Nucleotidyl transferase CUC60_006295 PF02719 Polysaccharide biosynthesis protein CUC60_006305 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CUC60_006305 PF00953 Glycosyl transferase family 4 CUC60_006310 PF01370 NAD dependent epimerase/dehydratase family CUC60_006315 PF13579 Glycosyl transferase 4-like domain CUC60_006320 PF02350 UDP-N-acetylglucosamine 2-epimerase CUC60_006325 PF01370 NAD dependent epimerase/dehydratase family CUC60_006330 PF08485 Polysaccharide biosynthesis protein C-terminal CUC60_006330 PF02719 Polysaccharide biosynthesis protein CUC60_006370 PF02348 Cytidylyltransferase CUC60_006375 PF00483 Nucleotidyl transferase CUC60_006385 PF03102 NeuB family CUC60_006385 PF08666 SAF domain CUC60_006390 PF02350 UDP-N-acetylglucosamine 2-epimerase CUC60_006395 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CUC60_006400 PF02719 Polysaccharide biosynthesis protein CUC60_006405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CUC60_006405 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CUC60_006405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CUC60_006410 PF10531 SLBB domain CUC60_006410 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CUC60_006410 PF02563 Polysaccharide biosynthesis/export protein CUC60_006415 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUC60_006425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC60_006425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CUC60_006430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC60_006430 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CUC60_006435 PF03023 Lipid II flippase MurJ CUC60_006440 PF01510 N-acetylmuramoyl-L-alanine amidase CUC60_006445 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CUC60_006445 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CUC60_006455 PF04185 Phosphoesterase family CUC60_006455 PF05506 Domain of unknown function (DUF756) CUC60_006460 PF01138 3' exoribonuclease family, domain 1 CUC60_006460 PF03725 3' exoribonuclease family, domain 2 CUC60_006465 PF00487 Fatty acid desaturase CUC60_006470 PF00175 Oxidoreductase NAD-binding domain CUC60_006475 PF00440 Bacterial regulatory proteins, tetR family CUC60_006480 PF00440 Bacterial regulatory proteins, tetR family CUC60_006480 PF08360 QacR-like protein, C-terminal region CUC60_006485 PF01323 DSBA-like thioredoxin domain CUC60_006495 PF13419 Haloacid dehalogenase-like hydrolase CUC60_006500 PF00106 short chain dehydrogenase CUC60_006515 PF00696 Amino acid kinase family CUC60_006515 PF00583 Acetyltransferase (GNAT) family CUC60_006520 PF09084 NMT1/THI5 like CUC60_006525 PF09084 NMT1/THI5 like CUC60_006530 PF00296 Luciferase-like monooxygenase CUC60_006535 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_006540 PF00005 ABC transporter CUC60_006545 PF08362 YcdC-like protein, C-terminal region CUC60_006545 PF00440 Bacterial regulatory proteins, tetR family CUC60_006550 PF01048 Phosphorylase superfamily CUC60_006560 PF01687 Riboflavin kinase CUC60_006560 PF06574 FAD synthetase CUC60_006565 PF08264 Anticodon-binding domain of tRNA CUC60_006565 PF00133 tRNA synthetases class I (I, L, M and V) CUC60_006565 PF06827 Zinc finger found in FPG and IleRS CUC60_006570 PF01252 Signal peptidase (SPase) II CUC60_006575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC60_006620 PF00579 tRNA synthetases class I (W and Y) CUC60_006625 PF03702 Anhydro-N-acetylmuramic acid kinase CUC60_006630 PF00561 alpha/beta hydrolase fold CUC60_006635 PF01521 Iron-sulphur cluster biosynthesis CUC60_006655 PF00005 ABC transporter CUC60_006655 PF12848 ABC transporter CUC60_006660 PF09335 SNARE associated Golgi protein CUC60_006670 PF00204 DNA gyrase B CUC60_006670 PF00986 DNA gyrase B subunit, carboxyl terminus CUC60_006670 PF18053 DNA gyrase B subunit insert domain CUC60_006670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_006670 PF01751 Toprim domain CUC60_006675 PF02463 RecF/RecN/SMC N terminal domain CUC60_006680 PF02767 DNA polymerase III beta subunit, central domain CUC60_006680 PF02768 DNA polymerase III beta subunit, C-terminal domain CUC60_006680 PF00712 DNA polymerase III beta subunit, N-terminal domain CUC60_006685 PF08299 Bacterial dnaA protein helix-turn-helix CUC60_006685 PF00308 Bacterial dnaA protein CUC60_006685 PF11638 DnaA N-terminal domain CUC60_006690 PF00468 Ribosomal protein L34 CUC60_006695 PF00825 Ribonuclease P CUC60_006700 PF01809 Putative membrane protein insertion efficiency factor CUC60_006705 PF14849 YidC periplasmic domain CUC60_006705 PF02096 60Kd inner membrane protein CUC60_006710 PF10396 GTP-binding protein TrmE N-terminus CUC60_006710 PF12631 MnmE helical domain CUC60_006710 PF01926 50S ribosome-binding GTPase CUC60_006715 PF02583 Metal-sensitive transcriptional repressor CUC60_006720 PF01545 Cation efflux family CUC60_006720 PF16916 Dimerisation domain of Zinc Transporter CUC60_006725 PF10411 Disulfide bond isomerase protein N-terminus CUC60_006725 PF13098 Thioredoxin-like domain CUC60_006735 PF00156 Phosphoribosyl transferase domain CUC60_006745 PF00355 Rieske [2Fe-2S] domain CUC60_006750 PF03738 Glutathionylspermidine synthase preATP-grasp CUC60_006760 PF03741 Integral membrane protein TerC family CUC60_006765 PF01569 PAP2 superfamily CUC60_006775 PF01225 Mur ligase family, catalytic domain CUC60_006775 PF08245 Mur ligase middle domain CUC60_006775 PF02875 Mur ligase family, glutamate ligase domain CUC60_006790 PF00731 AIR carboxylase CUC60_006795 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CUC60_006795 PF02222 ATP-grasp domain CUC60_006800 PF13406 Transglycosylase SLT domain CUC60_006825 PF01025 GrpE CUC60_006850 PF07859 alpha/beta hydrolase fold CUC60_006855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CUC60_006895 PF00209 Sodium:neurotransmitter symporter family CUC60_006905 PF01189 16S rRNA methyltransferase RsmB/F CUC60_006905 PF01029 NusB family CUC60_006910 PF00551 Formyl transferase CUC60_006910 PF02911 Formyl transferase, C-terminal domain CUC60_006915 PF00920 Dehydratase family CUC60_006930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_006930 PF03466 LysR substrate binding domain CUC60_006935 PF00860 Permease family CUC60_006940 PF00311 Phosphoenolpyruvate carboxylase CUC60_006945 PF00440 Bacterial regulatory proteins, tetR family CUC60_006945 PF08361 MAATS-type transcriptional repressor, C-terminal region CUC60_006950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC60_006955 PF00873 AcrB/AcrD/AcrF family CUC60_006965 PF00226 DnaJ domain CUC60_006965 PF00684 DnaJ central domain CUC60_006965 PF01556 DnaJ C terminal domain CUC60_006975 PF05173 Dihydrodipicolinate reductase, C-terminus CUC60_006975 PF01113 Dihydrodipicolinate reductase, N-terminus CUC60_006985 PF07690 Major Facilitator Superfamily CUC60_006990 PF00248 Aldo/keto reductase family CUC60_006995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_006995 PF03466 LysR substrate binding domain CUC60_007010 PF00392 Bacterial regulatory proteins, gntR family CUC60_007010 PF00155 Aminotransferase class I and II CUC60_007015 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_007015 PF00107 Zinc-binding dehydrogenase CUC60_007020 PF03352 Methyladenine glycosylase CUC60_007035 PF14815 NUDIX domain CUC60_007035 PF10576 Iron-sulfur binding domain of endonuclease III CUC60_007035 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC60_007035 PF00633 Helix-hairpin-helix motif CUC60_007050 PF07043 Protein of unknown function (DUF1328) CUC60_007055 PF03692 Putative zinc- or iron-chelating domain CUC60_007060 PF07995 Glucose / Sorbosone dehydrogenase CUC60_007065 PF12002 MgsA AAA+ ATPase C terminal CUC60_007065 PF00004 ATPase family associated with various cellular activities (AAA) CUC60_007065 PF16193 AAA C-terminal domain CUC60_007070 PF01226 Formate/nitrite transporter CUC60_007080 PF01259 SAICAR synthetase CUC60_007090 PF00701 Dihydrodipicolinate synthetase family CUC60_007095 PF00857 Isochorismatase family CUC60_007100 PF01758 Sodium Bile acid symporter family CUC60_007105 PF01554 MatE CUC60_007110 PF04463 Protein of unknown function (DUF523) CUC60_007115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC60_007125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC60_007130 PF14497 Glutathione S-transferase, C-terminal domain CUC60_007130 PF02798 Glutathione S-transferase, N-terminal domain CUC60_007140 PF00324 Amino acid permease CUC60_007150 PF07683 Cobalamin synthesis protein cobW C-terminal domain CUC60_007150 PF02492 CobW/HypB/UreG, nucleotide-binding domain CUC60_007165 PF05962 HutD CUC60_007170 PF01175 Urocanase Rossmann-like domain CUC60_007170 PF17392 Urocanase C-terminal domain CUC60_007170 PF17391 Urocanase N-terminal domain CUC60_007175 PF00221 Aromatic amino acid lyase CUC60_007180 PF00324 Amino acid permease CUC60_007185 PF01979 Amidohydrolase family CUC60_007190 PF00491 Arginase family CUC60_007205 PF01177 Asp/Glu/Hydantoin racemase CUC60_007215 PF01381 Helix-turn-helix CUC60_007225 PF08448 PAS fold CUC60_007225 PF13426 PAS domain CUC60_007225 PF00512 His Kinase A (phospho-acceptor) domain CUC60_007225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_007225 PF00072 Response regulator receiver domain CUC60_007230 PF00145 C-5 cytosine-specific DNA methylase CUC60_007240 PF06527 TniQ CUC60_007240 PF15978 Tn7-like transposition protein D CUC60_007245 PF11426 Tn7 transposition regulator TnsC CUC60_007245 PF13401 AAA domain CUC60_007250 PF00665 Integrase core domain CUC60_007255 PF08721 TnsA endonuclease C terminal CUC60_007255 PF08722 TnsA endonuclease N terminal CUC60_007260 PF01380 SIS domain CUC60_007265 PF14602 Hexapeptide repeat of succinyl-transferase CUC60_007265 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_007265 PF12804 MobA-like NTP transferase domain CUC60_007270 PF04608 Phosphatidylglycerophosphatase A CUC60_007275 PF00586 AIR synthase related protein, N-terminal domain CUC60_007275 PF02769 AIR synthase related protein, C-terminal domain CUC60_007280 PF01029 NusB family CUC60_007285 PF00885 6,7-dimethyl-8-ribityllumazine synthase CUC60_007290 PF00925 GTP cyclohydrolase II CUC60_007290 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CUC60_007320 PF02580 D-Tyr-tRNA(Tyr) deacylase CUC60_007325 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CUC60_007325 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CUC60_007330 PF00581 Rhodanese-like domain CUC60_007335 PF02666 Phosphatidylserine decarboxylase CUC60_007345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_007345 PF00512 His Kinase A (phospho-acceptor) domain CUC60_007345 PF00989 PAS fold CUC60_007345 PF11808 Phosphate regulon sensor protein PhoR CUC60_007350 PF00486 Transcriptional regulatory protein, C terminal CUC60_007350 PF00072 Response regulator receiver domain CUC60_007360 PF00106 short chain dehydrogenase CUC60_007365 PF01554 MatE CUC60_007370 PF00155 Aminotransferase class I and II CUC60_007375 PF04286 Protein of unknown function (DUF445) CUC60_007390 PF04262 Glutamate-cysteine ligase CUC60_007395 PF02600 Disulfide bond formation protein DsbB CUC60_007450 PF05728 Uncharacterised protein family (UPF0227) CUC60_007455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_007455 PF00986 DNA gyrase B subunit, carboxyl terminus CUC60_007455 PF00204 DNA gyrase B CUC60_007455 PF01751 Toprim domain CUC60_007460 PF00106 short chain dehydrogenase CUC60_007465 PF04115 Ureidoglycolate lyase CUC60_007470 PF03561 Allantoicase repeat CUC60_007475 PF01494 FAD binding domain CUC60_007485 PF00860 Permease family CUC60_007490 PF00576 HIUase/Transthyretin family CUC60_007520 PF02683 Cytochrome C biogenesis protein transmembrane region CUC60_007520 PF11412 Disulphide bond corrector protein DsbC CUC60_007525 PF00990 Diguanylate cyclase, GGDEF domain CUC60_007525 PF07694 5TMR of 5TMR-LYT CUC60_007530 PF07859 alpha/beta hydrolase fold CUC60_007540 PF03960 ArsC family CUC60_007545 PF03372 Endonuclease/Exonuclease/phosphatase family CUC60_007550 PF00156 Phosphoribosyl transferase domain CUC60_007555 PF00593 TonB dependent receptor CUC60_007555 PF07715 TonB-dependent Receptor Plug Domain CUC60_007565 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CUC60_007565 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CUC60_007575 PF01225 Mur ligase family, catalytic domain CUC60_007575 PF08245 Mur ligase middle domain CUC60_007575 PF02875 Mur ligase family, glutamate ligase domain CUC60_007580 PF01820 D-ala D-ala ligase N-terminus CUC60_007580 PF07478 D-ala D-ala ligase C-terminus CUC60_007585 PF03799 Cell division protein FtsQ CUC60_007585 PF08478 POTRA domain, FtsQ-type CUC60_007590 PF02491 SHS2 domain inserted in FTSA CUC60_007595 PF00091 Tubulin/FtsZ family, GTPase domain CUC60_007595 PF12327 FtsZ family, C-terminal domain CUC60_007600 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CUC60_007610 PF01551 Peptidase family M23 CUC60_007615 PF00456 Transketolase, thiamine diphosphate binding domain CUC60_007615 PF17831 Pyruvate dehydrogenase E1 component middle domain CUC60_007620 PF00364 Biotin-requiring enzyme CUC60_007620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC60_007620 PF02817 e3 binding domain CUC60_007630 PF01169 Uncharacterized protein family UPF0016 CUC60_007635 PF00593 TonB dependent receptor CUC60_007635 PF07715 TonB-dependent Receptor Plug Domain CUC60_007640 PF01613 Flavin reductase like domain CUC60_007640 PF00258 Flavodoxin CUC60_007645 PF03692 Putative zinc- or iron-chelating domain CUC60_007650 PF00571 CBS domain CUC60_007650 PF00478 IMP dehydrogenase / GMP reductase domain CUC60_007655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC60_007655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC60_007655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC60_007655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC60_007660 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CUC60_007660 PF01243 Pyridoxamine 5'-phosphate oxidase CUC60_007665 PF17768 RecJ OB domain CUC60_007665 PF02272 DHHA1 domain CUC60_007665 PF01368 DHH family CUC60_007685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC60_007695 PF04452 RNA methyltransferase CUC60_007700 PF00924 Mechanosensitive ion channel CUC60_007710 PF13193 AMP-binding enzyme C-terminal domain CUC60_007710 PF16177 Acetyl-coenzyme A synthetase N-terminus CUC60_007710 PF00501 AMP-binding enzyme CUC60_007715 PF00857 Isochorismatase family CUC60_007720 PF01037 Lrp/AsnC ligand binding domain CUC60_007725 PF00872 Transposase, Mutator family CUC60_007730 PF00296 Luciferase-like monooxygenase CUC60_007735 PF03358 NADPH-dependent FMN reductase CUC60_007740 PF00196 Bacterial regulatory proteins, luxR family CUC60_007740 PF00072 Response regulator receiver domain CUC60_007750 PF00072 Response regulator receiver domain CUC60_007750 PF00672 HAMP domain CUC60_007750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_007750 PF01627 Hpt domain CUC60_007750 PF00512 His Kinase A (phospho-acceptor) domain CUC60_007755 PF04341 Protein of unknown function, DUF485 CUC60_007760 PF00474 Sodium:solute symporter family CUC60_007770 PF02028 BCCT, betaine/carnitine/choline family transporter CUC60_007780 PF17158 Membrane-associated sensor, integral membrane domain CUC60_007780 PF00990 Diguanylate cyclase, GGDEF domain CUC60_007790 PF17755 UvrA DNA-binding domain CUC60_007790 PF17760 UvrA interaction domain CUC60_007790 PF00005 ABC transporter CUC60_007795 PF00440 Bacterial regulatory proteins, tetR family CUC60_007795 PF16925 Tetracyclin repressor-like, C-terminal domain CUC60_007800 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_007800 PF00107 Zinc-binding dehydrogenase CUC60_007810 PF06942 GlpM protein CUC60_007815 PF03070 TENA/THI-4/PQQC family CUC60_007815 PF02581 Thiamine monophosphate synthase CUC60_007815 PF08543 Phosphomethylpyrimidine kinase CUC60_007825 PF07690 Major Facilitator Superfamily CUC60_007830 PF00436 Single-strand binding protein family CUC60_007840 PF03591 AzlC protein CUC60_007850 PF00324 Amino acid permease CUC60_007860 PF00202 Aminotransferase class-III CUC60_007865 PF00171 Aldehyde dehydrogenase family CUC60_007870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_007875 PF00857 Isochorismatase family CUC60_007880 PF02678 Pirin CUC60_007880 PF05726 Pirin C-terminal cupin domain CUC60_007885 PF01593 Flavin containing amine oxidoreductase CUC60_007905 PF07690 Major Facilitator Superfamily CUC60_007910 PF03466 LysR substrate binding domain CUC60_007910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_007930 PF00248 Aldo/keto reductase family CUC60_007935 PF02311 AraC-like ligand binding domain CUC60_007935 PF12833 Helix-turn-helix domain CUC60_007965 PF01638 HxlR-like helix-turn-helix CUC60_007975 PF02525 Flavodoxin-like fold CUC60_007995 PF02705 K+ potassium transporter CUC60_008020 PF00230 Major intrinsic protein CUC60_008035 PF00977 Histidine biosynthesis protein CUC60_008040 PF01636 Phosphotransferase enzyme family CUC60_008055 PF03992 Antibiotic biosynthesis monooxygenase CUC60_008070 PF00977 Histidine biosynthesis protein CUC60_008085 PF00117 Glutamine amidotransferase class-I CUC60_008090 PF00475 Imidazoleglycerol-phosphate dehydratase CUC60_008110 PF00583 Acetyltransferase (GNAT) family CUC60_008115 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CUC60_008115 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CUC60_008125 PF00672 HAMP domain CUC60_008125 PF00512 His Kinase A (phospho-acceptor) domain CUC60_008125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_008130 PF00486 Transcriptional regulatory protein, C terminal CUC60_008130 PF00072 Response regulator receiver domain CUC60_008135 PF17674 HHH domain CUC60_008135 PF00575 S1 RNA binding domain CUC60_008135 PF16921 Tex protein YqgF-like domain CUC60_008135 PF09371 Tex-like protein N-terminal domain CUC60_008140 PF00916 Sulfate permease family CUC60_008140 PF01740 STAS domain CUC60_008145 PF00106 short chain dehydrogenase CUC60_008150 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC60_008155 PF12848 ABC transporter CUC60_008155 PF00005 ABC transporter CUC60_008180 PF04191 Phospholipid methyltransferase CUC60_008200 PF00529 HlyD membrane-fusion protein of T1SS CUC60_008200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC60_008205 PF00873 AcrB/AcrD/AcrF family CUC60_008210 PF01545 Cation efflux family CUC60_008240 PF00324 Amino acid permease CUC60_008255 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC60_008270 PF01795 MraW methylase family CUC60_008280 PF03717 Penicillin-binding Protein dimerisation domain CUC60_008280 PF00905 Penicillin binding protein transpeptidase domain CUC60_008285 PF01225 Mur ligase family, catalytic domain CUC60_008285 PF08245 Mur ligase middle domain CUC60_008285 PF02875 Mur ligase family, glutamate ligase domain CUC60_008290 PF08245 Mur ligase middle domain CUC60_008290 PF01225 Mur ligase family, catalytic domain CUC60_008290 PF02875 Mur ligase family, glutamate ligase domain CUC60_008295 PF00953 Glycosyl transferase family 4 CUC60_008305 PF13847 Methyltransferase domain CUC60_008310 PF00912 Transglycosylase CUC60_008310 PF00905 Penicillin binding protein transpeptidase domain CUC60_008310 PF17092 Penicillin-binding protein OB-like domain CUC60_008335 PF07660 Secretin and TonB N terminus short domain CUC60_008335 PF00263 Bacterial type II and III secretion system protein CUC60_008335 PF03958 Bacterial type II/III secretion system short domain CUC60_008335 PF11741 AMIN domain CUC60_008340 PF01202 Shikimate kinase CUC60_008345 PF01761 3-dehydroquinate synthase CUC60_008355 PF00310 Glutamine amidotransferases class-II CUC60_008355 PF04898 Glutamate synthase central domain CUC60_008355 PF01645 Conserved region in glutamate synthase CUC60_008355 PF01493 GXGXG motif CUC60_008360 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CUC60_008360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_008370 PF04011 LemA family CUC60_008375 PF04536 TPM domain CUC60_008385 PF00114 Pilin (bacterial filament) CUC60_008385 PF07963 Prokaryotic N-terminal methylation motif CUC60_008395 PF15864 Protein glycosylation ligase CUC60_008395 PF11846 Virulence factor membrane-bound polymerase, C-terminal CUC60_008395 PF04932 O-Antigen ligase CUC60_008405 PF00210 Ferritin-like domain CUC60_008410 PF04324 BFD-like [2Fe-2S] binding domain CUC60_008415 PF01042 Endoribonuclease L-PSP CUC60_008420 PF02824 TGS domain CUC60_008420 PF04607 Region found in RelA / SpoT proteins CUC60_008420 PF13291 ACT domain CUC60_008430 PF01192 RNA polymerase Rpb6 CUC60_008435 PF00625 Guanylate kinase CUC60_008440 PF02401 LytB protein CUC60_008480 PF00886 Ribosomal protein S16 CUC60_008485 PF01782 RimM N-terminal domain CUC60_008485 PF05239 PRC-barrel domain CUC60_008490 PF01746 tRNA (Guanine-1)-methyltransferase CUC60_008495 PF01245 Ribosomal protein L19 CUC60_008505 PF03280 Proteobacterial lipase chaperone protein CUC60_008510 PF16198 tRNA pseudouridylate synthase B C-terminal domain CUC60_008510 PF01509 TruB family pseudouridylate synthase (N terminal domain) CUC60_008510 PF09157 Pseudouridine synthase II TruB, C-terminal CUC60_008515 PF01925 Sulfite exporter TauE/SafE CUC60_008525 PF00892 EamA-like transporter family CUC60_008530 PF00892 EamA-like transporter family CUC60_008535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC60_008535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC60_008540 PF02913 FAD linked oxidases, C-terminal domain CUC60_008540 PF01565 FAD binding domain CUC60_008550 PF03992 Antibiotic biosynthesis monooxygenase CUC60_008555 PF02525 Flavodoxin-like fold CUC60_008565 PF07690 Major Facilitator Superfamily CUC60_008570 PF12805 FUSC-like inner membrane protein yccS CUC60_008575 PF00080 Copper/zinc superoxide dismutase (SODC) CUC60_008580 PF01594 AI-2E family transporter CUC60_008585 PF13614 AAA domain CUC60_008615 PF00324 Amino acid permease CUC60_008620 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CUC60_008620 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CUC60_008630 PF04958 Arginine N-succinyltransferase beta subunit CUC60_008635 PF00171 Aldehyde dehydrogenase family CUC60_008640 PF04996 Succinylarginine dihydrolase CUC60_008645 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CUC60_008680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_008680 PF03466 LysR substrate binding domain CUC60_008685 PF00892 EamA-like transporter family CUC60_008695 PF05746 DALR anticodon binding domain CUC60_008695 PF02092 Glycyl-tRNA synthetase beta subunit CUC60_008700 PF02091 Glycyl-tRNA synthetase alpha subunit CUC60_008725 PF00571 CBS domain CUC60_008730 PF04024 PspC domain CUC60_008740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_008740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_008740 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_008740 PF12806 Acetyl-CoA dehydrogenase C-terminal like CUC60_008755 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CUC60_008755 PF01488 Shikimate / quinate 5-dehydrogenase CUC60_008755 PF08501 Shikimate dehydrogenase substrate binding domain CUC60_008760 PF01218 Coproporphyrinogen III oxidase CUC60_008765 PF00925 GTP cyclohydrolase II CUC60_008770 PF02780 Transketolase, C-terminal domain CUC60_008770 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CUC60_008770 PF02779 Transketolase, pyrimidine binding domain CUC60_008775 PF00459 Inositol monophosphatase family CUC60_008780 PF00271 Helicase conserved C-terminal domain CUC60_008780 PF12343 Cold shock protein DEAD box A CUC60_008780 PF00270 DEAD/DEAH box helicase CUC60_008780 PF03880 DbpA RNA binding domain CUC60_008790 PF00005 ABC transporter CUC60_008795 PF02405 Permease MlaE CUC60_008805 PF05494 MlaC protein CUC60_008815 PF01544 CorA-like Mg2+ transporter protein CUC60_008820 PF03641 Possible lysine decarboxylase CUC60_008825 PF00293 NUDIX domain CUC60_008830 PF00156 Phosphoribosyl transferase domain CUC60_008835 PF17191 RecG wedge domain CUC60_008835 PF00271 Helicase conserved C-terminal domain CUC60_008835 PF00270 DEAD/DEAH box helicase CUC60_008850 PF01553 Acyltransferase CUC60_008860 PF00375 Sodium:dicarboxylate symporter family CUC60_008875 PF01926 50S ribosome-binding GTPase CUC60_008880 PF02082 Transcriptional regulator CUC60_008885 PF00970 Oxidoreductase FAD-binding domain CUC60_008885 PF00042 Globin CUC60_008885 PF00175 Oxidoreductase NAD-binding domain CUC60_008890 PF05872 Bacterial protein of unknown function (DUF853) CUC60_008895 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC60_008900 PF00117 Glutamine amidotransferase class-I CUC60_008905 PF00338 Ribosomal protein S10p/S20e CUC60_008910 PF00297 Ribosomal protein L3 CUC60_008915 PF00573 Ribosomal protein L4/L1 family CUC60_008920 PF00276 Ribosomal protein L23 CUC60_008925 PF00181 Ribosomal Proteins L2, RNA binding domain CUC60_008925 PF03947 Ribosomal Proteins L2, C-terminal domain CUC60_008930 PF00203 Ribosomal protein S19 CUC60_008935 PF00237 Ribosomal protein L22p/L17e CUC60_008940 PF00189 Ribosomal protein S3, C-terminal domain CUC60_008940 PF07650 KH domain CUC60_008945 PF00252 Ribosomal protein L16p/L10e CUC60_008950 PF00831 Ribosomal L29 protein CUC60_008955 PF00366 Ribosomal protein S17 CUC60_008960 PF00238 Ribosomal protein L14p/L23e CUC60_008965 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CUC60_008965 PF00467 KOW motif CUC60_008970 PF00281 Ribosomal protein L5 CUC60_008970 PF00673 ribosomal L5P family C-terminus CUC60_008975 PF00253 Ribosomal protein S14p/S29e CUC60_008980 PF00410 Ribosomal protein S8 CUC60_008985 PF00347 Ribosomal protein L6 CUC60_008990 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CUC60_008995 PF03719 Ribosomal protein S5, C-terminal domain CUC60_008995 PF00333 Ribosomal protein S5, N-terminal domain CUC60_009000 PF00327 Ribosomal protein L30p/L7e CUC60_009005 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CUC60_009010 PF00344 SecY translocase CUC60_009015 PF00444 Ribosomal protein L36 CUC60_009020 PF00416 Ribosomal protein S13/S18 CUC60_009025 PF00411 Ribosomal protein S11 CUC60_009030 PF01479 S4 domain CUC60_009030 PF00163 Ribosomal protein S4/S9 N-terminal domain CUC60_009035 PF01000 RNA polymerase Rpb3/RpoA insert domain CUC60_009035 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CUC60_009035 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CUC60_009040 PF01196 Ribosomal protein L17 CUC60_009045 PF00743 Flavin-binding monooxygenase-like CUC60_009050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_009050 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_009050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_009055 PF03937 Flavinator of succinate dehydrogenase CUC60_009085 PF09526 Probable metal-binding protein (DUF2387) CUC60_009090 PF01432 Peptidase family M3 CUC60_009095 PF08461 Ribonuclease R winged-helix domain CUC60_009095 PF08206 Ribonuclease B OB domain CUC60_009095 PF00773 RNB domain CUC60_009095 PF00575 S1 RNA binding domain CUC60_009095 PF17876 Cold shock domain CUC60_009140 PF01557 Fumarylacetoacetate (FAA) hydrolase family CUC60_009145 PF12833 Helix-turn-helix domain CUC60_009150 PF00892 EamA-like transporter family CUC60_009155 PF03631 Virulence factor BrkB CUC60_009160 PF03358 NADPH-dependent FMN reductase CUC60_009185 PF02130 Uncharacterized protein family UPF0054 CUC60_009190 PF02562 PhoH-like protein CUC60_009195 PF00919 Uncharacterized protein family UPF0004 CUC60_009195 PF04055 Radical SAM superfamily CUC60_009195 PF01938 TRAM domain CUC60_009200 PF01464 Transglycosylase SLT domain CUC60_009200 PF01551 Peptidase family M23 CUC60_009200 PF10145 Phage-related minor tail protein CUC60_009210 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CUC60_009210 PF00056 lactate/malate dehydrogenase, NAD binding domain CUC60_009230 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CUC60_009235 PF01066 CDP-alcohol phosphatidyltransferase CUC60_009280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_009280 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_009280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_009285 PF00440 Bacterial regulatory proteins, tetR family CUC60_009285 PF17932 Tetracyclin repressor-like, C-terminal domain CUC60_009300 PF01039 Carboxyl transferase domain CUC60_009305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_009305 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_009305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_009315 PF02785 Biotin carboxylase C-terminal domain CUC60_009315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC60_009315 PF00289 Biotin carboxylase, N-terminal domain CUC60_009315 PF00364 Biotin-requiring enzyme CUC60_009325 PF04386 Stringent starvation protein B CUC60_009330 PF13417 Glutathione S-transferase, N-terminal domain CUC60_009330 PF00043 Glutathione S-transferase, C-terminal domain CUC60_009335 PF00380 Ribosomal protein S9/S16 CUC60_009340 PF00572 Ribosomal protein L13 CUC60_009345 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CUC60_009350 PF00398 Ribosomal RNA adenine dimethylase CUC60_009355 PF00149 Calcineurin-like phosphoesterase CUC60_009375 PF16360 GTP-binding GTPase Middle Region CUC60_009375 PF01926 50S ribosome-binding GTPase CUC60_009375 PF13167 GTP-binding GTPase N-terminal CUC60_009385 PF13091 PLD-like domain CUC60_009390 PF00149 Calcineurin-like phosphoesterase CUC60_009390 PF10518 TAT (twin-arginine translocation) pathway signal sequence CUC60_009395 PF01389 OmpA-like transmembrane domain CUC60_009395 PF00691 OmpA family CUC60_009400 PF00990 Diguanylate cyclase, GGDEF domain CUC60_009400 PF17152 Periplasmic sensor domain CUC60_009435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC60_009435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_009445 PF00753 Metallo-beta-lactamase superfamily CUC60_009445 PF04273 Putative phosphatase (DUF442) CUC60_009450 PF00561 alpha/beta hydrolase fold CUC60_009455 PF00085 Thioredoxin CUC60_009460 PF03061 Thioesterase superfamily CUC60_009470 PF04461 Protein of unknown function (DUF520) CUC60_009480 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CUC60_009480 PF01266 FAD dependent oxidoreductase CUC60_009490 PF03795 YCII-related domain CUC60_009495 PF04279 Intracellular septation protein A CUC60_009500 PF02811 PHP domain CUC60_009505 PF01062 Bestrophin, RFP-TM, chloride channel CUC60_009510 PF04002 RadC-like JAB domain CUC60_009515 PF02441 Flavoprotein CUC60_009515 PF04127 DNA / pantothenate metabolism flavoprotein CUC60_009520 PF02355 Protein export membrane protein CUC60_009520 PF07549 SecD/SecF GG Motif CUC60_009525 PF07549 SecD/SecF GG Motif CUC60_009525 PF13721 SecD export protein N-terminal TM region CUC60_009525 PF02355 Protein export membrane protein CUC60_009530 PF02699 Preprotein translocase subunit CUC60_009535 PF01702 Queuine tRNA-ribosyltransferase CUC60_009550 PF02547 Queuosine biosynthesis protein CUC60_009560 PF07689 KaiB domain CUC60_009560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_009560 PF00512 His Kinase A (phospho-acceptor) domain CUC60_009565 PF03710 Glutamate-ammonia ligase adenylyltransferase CUC60_009565 PF08335 GlnD PII-uridylyltransferase CUC60_009570 PF01063 Amino-transferase class IV CUC60_009585 PF01522 Polysaccharide deacetylase CUC60_009590 PF00535 Glycosyl transferase family 2 CUC60_009595 PF00534 Glycosyl transferases group 1 CUC60_009595 PF13439 Glycosyltransferase Family 4 CUC60_009620 PF11380 Stealth protein CR2, conserved region 2 CUC60_009620 PF17101 Stealth protein CR1, conserved region 1 CUC60_009620 PF17102 Stealth protein CR3, conserved region 3 CUC60_009625 PF02938 GAD domain CUC60_009625 PF00152 tRNA synthetases class II (D, K and N) CUC60_009625 PF01336 OB-fold nucleic acid binding domain CUC60_009635 PF07715 TonB-dependent Receptor Plug Domain CUC60_009635 PF00593 TonB dependent receptor CUC60_009655 PF06146 Phosphate-starvation-inducible E CUC60_009660 PF02798 Glutathione S-transferase, N-terminal domain CUC60_009660 PF00043 Glutathione S-transferase, C-terminal domain CUC60_009665 PF03466 LysR substrate binding domain CUC60_009665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_009670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_009670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_009670 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_009670 PF12806 Acetyl-CoA dehydrogenase C-terminal like CUC60_009675 PF12806 Acetyl-CoA dehydrogenase C-terminal like CUC60_009675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_009675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_009675 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_009685 PF00512 His Kinase A (phospho-acceptor) domain CUC60_009685 PF00672 HAMP domain CUC60_009685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_009690 PF00486 Transcriptional regulatory protein, C terminal CUC60_009690 PF00072 Response regulator receiver domain CUC60_009695 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CUC60_009715 PF01923 Cobalamin adenosyltransferase CUC60_009720 PF07715 TonB-dependent Receptor Plug Domain CUC60_009720 PF00593 TonB dependent receptor CUC60_009725 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CUC60_009730 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_009755 PF00290 Tryptophan synthase alpha chain CUC60_009760 PF01039 Carboxyl transferase domain CUC60_009765 PF08245 Mur ligase middle domain CUC60_009765 PF02875 Mur ligase family, glutamate ligase domain CUC60_009780 PF00753 Metallo-beta-lactamase superfamily CUC60_009785 PF10417 C-terminal domain of 1-Cys peroxiredoxin CUC60_009785 PF00578 AhpC/TSA family CUC60_009800 PF07690 Major Facilitator Superfamily CUC60_009800 PF00083 Sugar (and other) transporter CUC60_009805 PF03006 Haemolysin-III related CUC60_009830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CUC60_009830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CUC60_009830 PF00378 Enoyl-CoA hydratase/isomerase CUC60_009835 PF02803 Thiolase, C-terminal domain CUC60_009835 PF00108 Thiolase, N-terminal domain CUC60_009840 PF02311 AraC-like ligand binding domain CUC60_009840 PF12833 Helix-turn-helix domain CUC60_009845 PF02515 CoA-transferase family III CUC60_009850 PF04966 Carbohydrate-selective porin, OprB family CUC60_009855 PF01011 PQQ enzyme repeat CUC60_009860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CUC60_009860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CUC60_009870 PF00893 Small Multidrug Resistance protein CUC60_009880 PF00108 Thiolase, N-terminal domain CUC60_009880 PF02803 Thiolase, C-terminal domain CUC60_009890 PF00691 OmpA family CUC60_009890 PF13505 Outer membrane protein beta-barrel domain CUC60_009900 PF01139 tRNA-splicing ligase RtcB CUC60_009905 PF00324 Amino acid permease CUC60_009910 PF08468 Methyltransferase small domain N-terminal CUC60_009910 PF05175 Methyltransferase small domain CUC60_009915 PF00860 Permease family CUC60_009925 PF01741 Large-conductance mechanosensitive channel, MscL CUC60_009940 PF06827 Zinc finger found in FPG and IleRS CUC60_009940 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CUC60_009940 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CUC60_009945 PF02245 Methylpurine-DNA glycosylase (MPG) CUC60_009950 PF07715 TonB-dependent Receptor Plug Domain CUC60_009950 PF00593 TonB dependent receptor CUC60_009965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC60_009980 PF10411 Disulfide bond isomerase protein N-terminus CUC60_009980 PF13098 Thioredoxin-like domain CUC60_009985 PF01571 Aminomethyltransferase folate-binding domain CUC60_009995 PF04343 Protein of unknown function, DUF488 CUC60_010000 PF03831 PhnA domain CUC60_010000 PF08274 PhnA Zinc-Ribbon CUC60_010005 PF07411 Domain of unknown function (DUF1508) CUC60_010010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC60_010010 PF04073 Aminoacyl-tRNA editing domain CUC60_010010 PF03129 Anticodon binding domain CUC60_010015 PF00873 AcrB/AcrD/AcrF family CUC60_010030 PF00072 Response regulator receiver domain CUC60_010035 PF00072 Response regulator receiver domain CUC60_010045 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CUC60_010045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC60_010050 PF01584 CheW-like domain CUC60_010050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_010050 PF01627 Hpt domain CUC60_010050 PF00072 Response regulator receiver domain CUC60_010060 PF01546 Peptidase family M20/M25/M40 CUC60_010060 PF07687 Peptidase dimerisation domain CUC60_010065 PF08085 Entericidin EcnA/B family CUC60_010075 PF04304 Protein of unknown function (DUF454) CUC60_010080 PF03734 L,D-transpeptidase catalytic domain CUC60_010080 PF17969 L,D-transpeptidase C-terminal domain CUC60_010120 PF00667 FAD binding domain CUC60_010120 PF00175 Oxidoreductase NAD-binding domain CUC60_010120 PF00258 Flavodoxin CUC60_010130 PF12805 FUSC-like inner membrane protein yccS CUC60_010135 PF07690 Major Facilitator Superfamily CUC60_010140 PF00881 Nitroreductase family CUC60_010155 PF01235 Sodium:alanine symporter family CUC60_010165 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_010165 PF13291 ACT domain CUC60_010170 PF05992 SbmA/BacA-like family CUC60_010200 PF02637 GatB domain CUC60_010200 PF02934 GatB/GatE catalytic domain CUC60_010205 PF01425 Amidase CUC60_010210 PF02686 Glu-tRNAGln amidotransferase C subunit CUC60_010220 PF04085 rod shape-determining protein MreC CUC60_010225 PF04093 rod shape-determining protein MreD CUC60_010230 PF02545 Maf-like protein CUC60_010235 PF00575 S1 RNA binding domain CUC60_010235 PF10150 Ribonuclease E/G family CUC60_010245 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain CUC60_010245 PF06974 Protein of unknown function (DUF1298) CUC60_010250 PF01507 Phosphoadenosine phosphosulfate reductase family CUC60_010265 PF02525 Flavodoxin-like fold CUC60_010285 PF02673 Bacitracin resistance protein BacA CUC60_010290 PF06719 AraC-type transcriptional regulator N-terminus CUC60_010290 PF12833 Helix-turn-helix domain CUC60_010295 PF14765 Polyketide synthase dehydratase CUC60_010295 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_010295 PF08990 Erythronolide synthase docking CUC60_010295 PF09277 Erythronolide synthase, docking CUC60_010295 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC60_010295 PF16197 Ketoacyl-synthetase C-terminal extension CUC60_010295 PF00698 Acyl transferase domain CUC60_010295 PF08659 KR domain CUC60_010295 PF00550 Phosphopantetheine attachment site CUC60_010295 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC60_010300 PF01965 DJ-1/PfpI family CUC60_010310 PF00324 Amino acid permease CUC60_010315 PF04303 PrpF protein CUC60_010320 PF00348 Polyprenyl synthetase CUC60_010325 PF04237 YjbR CUC60_010330 PF01145 SPFH domain / Band 7 family CUC60_010340 PF01734 Patatin-like phospholipase CUC60_010365 PF00884 Sulfatase CUC60_010365 PF08019 Phosphoethanolamine transferase EptA/EptB CUC60_010370 PF00072 Response regulator receiver domain CUC60_010370 PF00486 Transcriptional regulatory protein, C terminal CUC60_010375 PF00512 His Kinase A (phospho-acceptor) domain CUC60_010375 PF08521 Two-component sensor kinase N-terminal CUC60_010375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_010385 PF00909 Ammonium Transporter Family CUC60_010395 PF03466 LysR substrate binding domain CUC60_010395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_010415 PF10458 Valyl tRNA synthetase tRNA binding arm CUC60_010415 PF00133 tRNA synthetases class I (I, L, M and V) CUC60_010415 PF08264 Anticodon-binding domain of tRNA CUC60_010435 PF01906 Putative heavy-metal-binding CUC60_010440 PF01906 Putative heavy-metal-binding CUC60_010445 PF02321 Outer membrane efflux protein CUC60_010450 PF00873 AcrB/AcrD/AcrF family CUC60_010455 PF00529 HlyD membrane-fusion protein of T1SS CUC60_010455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC60_010460 PF01569 PAP2 superfamily CUC60_010470 PF00348 Polyprenyl synthetase CUC60_010480 PF00829 Ribosomal prokaryotic L21 protein CUC60_010485 PF01016 Ribosomal L27 protein CUC60_010490 PF03548 Outer membrane lipoprotein carrier protein LolA CUC60_010500 PF02403 Seryl-tRNA synthetase N-terminal domain CUC60_010500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC60_010505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CUC60_010505 PF14824 Sirohaem biosynthesis protein central CUC60_010505 PF10414 Sirohaem synthase dimerisation region CUC60_010510 PF00588 SpoU rRNA Methylase family CUC60_010515 PF01638 HxlR-like helix-turn-helix CUC60_010520 PF03358 NADPH-dependent FMN reductase CUC60_010525 PF13520 Amino acid permease CUC60_010530 PF00465 Iron-containing alcohol dehydrogenase CUC60_010540 PF03099 Biotin/lipoate A/B protein ligase family CUC60_010545 PF04359 Protein of unknown function (DUF493) CUC60_010550 PF04546 Sigma-70, non-essential region CUC60_010550 PF04542 Sigma-70 region 2 CUC60_010550 PF00140 Sigma-70 factor, region 1.2 CUC60_010550 PF04545 Sigma-70, region 4 CUC60_010550 PF04539 Sigma-70 region 3 CUC60_010550 PF03979 Sigma-70 factor, region 1.1 CUC60_010580 PF00285 Citrate synthase, C-terminal domain CUC60_010585 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CUC60_010590 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CUC60_010595 PF00890 FAD binding domain CUC60_010595 PF02910 Fumarate reductase flavoprotein C-term CUC60_010600 PF13085 2Fe-2S iron-sulfur cluster binding domain CUC60_010615 PF16078 2-oxoglutarate dehydrogenase N-terminus CUC60_010615 PF02779 Transketolase, pyrimidine binding domain CUC60_010615 PF00676 Dehydrogenase E1 component CUC60_010615 PF16870 2-oxoglutarate dehydrogenase C-terminal CUC60_010620 PF00364 Biotin-requiring enzyme CUC60_010620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC60_010620 PF02817 e3 binding domain CUC60_010625 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_010625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC60_010630 PF08442 ATP-grasp domain CUC60_010630 PF00549 CoA-ligase CUC60_010635 PF00549 CoA-ligase CUC60_010635 PF02629 CoA binding domain CUC60_010640 PF00579 tRNA synthetases class I (W and Y) CUC60_010645 PF05661 Protein of unknown function (DUF808) CUC60_010650 PF04228 Putative neutral zinc metallopeptidase CUC60_010695 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC60_010700 PF00582 Universal stress protein family CUC60_010705 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_010710 PF03449 Transcription elongation factor, N-terminal CUC60_010710 PF01272 Transcription elongation factor, GreA/GreB, C-term CUC60_010715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC60_010715 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CUC60_010715 PF02142 MGS-like domain CUC60_010720 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CUC60_010720 PF00117 Glutamine amidotransferase class-I CUC60_010735 PF01985 CRS1 / YhbY (CRM) domain CUC60_010740 PF01728 FtsJ-like methyltransferase CUC60_010745 PF01434 Peptidase family M41 CUC60_010745 PF06480 FtsH Extracellular CUC60_010745 PF17862 AAA+ lid domain CUC60_010745 PF00004 ATPase family associated with various cellular activities (AAA) CUC60_010750 PF00809 Pterin binding enzyme CUC60_010770 PF16655 PhoD-like phosphatase, N-terminal domain CUC60_010770 PF09423 PhoD-like phosphatase CUC60_010785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CUC60_010785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CUC60_010800 PF00083 Sugar (and other) transporter CUC60_010805 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CUC60_010805 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CUC60_010810 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CUC60_010810 PF01266 FAD dependent oxidoreductase CUC60_010815 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CUC60_010815 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CUC60_010820 PF00781 Diacylglycerol kinase catalytic domain CUC60_010825 PF00149 Calcineurin-like phosphoesterase CUC60_010835 PF00166 Chaperonin 10 Kd subunit CUC60_010840 PF00118 TCP-1/cpn60 chaperonin family CUC60_010845 PF01219 Prokaryotic diacylglycerol kinase CUC60_010855 PF03009 Glycerophosphoryl diester phosphodiesterase family CUC60_010860 PF00873 AcrB/AcrD/AcrF family CUC60_010870 PF01435 Peptidase family M48 CUC60_010875 PF01464 Transglycosylase SLT domain CUC60_010885 PF01171 PP-loop family CUC60_010895 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC60_010895 PF01464 Transglycosylase SLT domain CUC60_010900 PF01272 Transcription elongation factor, GreA/GreB, C-term CUC60_010900 PF03449 Transcription elongation factor, N-terminal CUC60_010915 PF13193 AMP-binding enzyme C-terminal domain CUC60_010915 PF00975 Thioesterase domain CUC60_010915 PF00550 Phosphopantetheine attachment site CUC60_010915 PF00501 AMP-binding enzyme CUC60_010915 PF00668 Condensation domain CUC60_010930 PF03412 Peptidase C39 family CUC60_010930 PF00664 ABC transporter transmembrane region CUC60_010930 PF00005 ABC transporter CUC60_010965 PF08281 Sigma-70, region 4 CUC60_010965 PF00665 Integrase core domain CUC60_010970 PF01695 IstB-like ATP binding protein CUC60_011000 PF00881 Nitroreductase family CUC60_011015 PF02595 Glycerate kinase family CUC60_011020 PF00384 Molybdopterin oxidoreductase CUC60_011025 PF02634 FdhD/NarQ family CUC60_011030 PF06803 Protein of unknown function (DUF1232) CUC60_011035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC60_011035 PF11890 Domain of unknown function (DUF3410) CUC60_011035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC60_011040 PF00152 tRNA synthetases class II (D, K and N) CUC60_011050 PF18073 Rubredoxin metal binding domain CUC60_011055 PF00324 Amino acid permease CUC60_011070 PF01678 Diaminopimelate epimerase CUC60_011075 PF01810 LysE type translocator CUC60_011080 PF02899 Phage integrase, N-terminal SAM-like domain CUC60_011080 PF00589 Phage integrase family CUC60_011085 PF01012 Electron transfer flavoprotein domain CUC60_011090 PF01012 Electron transfer flavoprotein domain CUC60_011090 PF00766 Electron transfer flavoprotein FAD-binding domain CUC60_011095 PF00521 DNA gyrase/topoisomerase IV, subunit A CUC60_011095 PF03989 DNA gyrase C-terminal domain, beta-propeller CUC60_011110 PF00535 Glycosyl transferase family 2 CUC60_011130 PF13533 Biotin-lipoyl like CUC60_011150 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CUC60_011160 PF12704 MacB-like periplasmic core domain CUC60_011160 PF02687 FtsX-like permease family CUC60_011165 PF00005 ABC transporter CUC60_011170 PF00753 Metallo-beta-lactamase superfamily CUC60_011170 PF13567 Domain of unknown function (DUF4131) CUC60_011170 PF03772 Competence protein CUC60_011180 PF06965 Na+/H+ antiporter 1 CUC60_011180 PF01343 Peptidase family S49 CUC60_011185 PF12697 Alpha/beta hydrolase family CUC60_011190 PF00551 Formyl transferase CUC60_011195 PF00586 AIR synthase related protein, N-terminal domain CUC60_011195 PF02769 AIR synthase related protein, C-terminal domain CUC60_011200 PF01594 AI-2E family transporter CUC60_011205 PF11638 DnaA N-terminal domain CUC60_011205 PF00308 Bacterial dnaA protein CUC60_011205 PF08299 Bacterial dnaA protein helix-turn-helix CUC60_011235 PF08032 RNA 2'-O ribose methyltransferase substrate binding CUC60_011235 PF00588 SpoU rRNA Methylase family CUC60_011240 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CUC60_011250 PF00691 OmpA family CUC60_011255 PF07676 WD40-like Beta Propeller Repeat CUC60_011255 PF04052 TolB amino-terminal domain CUC60_011265 PF02472 Biopolymer transport protein ExbD/TolR CUC60_011270 PF01618 MotA/TolQ/ExbB proton channel family CUC60_011275 PF03061 Thioesterase superfamily CUC60_011280 PF01546 Peptidase family M20/M25/M40 CUC60_011280 PF07687 Peptidase dimerisation domain CUC60_011285 PF05496 Holliday junction DNA helicase RuvB P-loop domain CUC60_011285 PF05491 RuvB C-terminal winged helix domain CUC60_011285 PF17864 RuvB AAA lid domain CUC60_011290 PF01330 RuvA N terminal domain CUC60_011290 PF07499 RuvA, C-terminal domain CUC60_011300 PF02769 AIR synthase related protein, C-terminal domain CUC60_011300 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CUC60_011300 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CUC60_011305 PF07690 Major Facilitator Superfamily CUC60_011310 PF01784 NIF3 (NGG1p interacting factor 3) CUC60_011315 PF00378 Enoyl-CoA hydratase/isomerase CUC60_011320 PF01467 Cytidylyltransferase-like CUC60_011320 PF00293 NUDIX domain CUC60_011330 PF00578 AhpC/TSA family CUC60_011345 PF06508 Queuosine biosynthesis protein QueC CUC60_011355 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_011355 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CUC60_011355 PF14602 Hexapeptide repeat of succinyl-transferase CUC60_011365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_011365 PF03466 LysR substrate binding domain CUC60_011370 PF00005 ABC transporter CUC60_011370 PF12857 TOBE-like domain CUC60_011375 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_011380 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_011395 PF01063 Amino-transferase class IV CUC60_011400 PF02618 YceG-like family CUC60_011405 PF02223 Thymidylate kinase CUC60_011415 PF00890 FAD binding domain CUC60_011415 PF02910 Fumarate reductase flavoprotein C-term CUC60_011420 PF13180 PDZ domain CUC60_011435 PF10502 Signal peptidase, peptidase S26 CUC60_011445 PF14622 Ribonuclease-III-like CUC60_011445 PF00035 Double-stranded RNA binding motif CUC60_011450 PF01926 50S ribosome-binding GTPase CUC60_011450 PF07650 KH domain CUC60_011460 PF02565 Recombination protein O C terminal CUC60_011460 PF11967 Recombination protein O N terminal CUC60_011465 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CUC60_011470 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CUC60_011475 PF00106 short chain dehydrogenase CUC60_011515 PF00990 Diguanylate cyclase, GGDEF domain CUC60_011515 PF17151 Periplasmic sensor domain CUC60_011525 PF04851 Type III restriction enzyme, res subunit CUC60_011525 PF17757 UvrB interaction domain CUC60_011525 PF00271 Helicase conserved C-terminal domain CUC60_011525 PF12344 Ultra-violet resistance protein B CUC60_011525 PF02151 UvrB/uvrC motif CUC60_011535 PF00892 EamA-like transporter family CUC60_011540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CUC60_011540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CUC60_011555 PF01018 GTP1/OBG CUC60_011555 PF01926 50S ribosome-binding GTPase CUC60_011560 PF01472 PUA domain CUC60_011560 PF00696 Amino acid kinase family CUC60_011570 PF07759 Protein of unknown function (DUF1615) CUC60_011575 PF01207 Dihydrouridine synthase (Dus) CUC60_011595 PF02350 UDP-N-acetylglucosamine 2-epimerase CUC60_011625 PF00875 DNA photolyase CUC60_011625 PF03441 FAD binding domain of DNA photolyase CUC60_011630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC60_011635 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_011650 PF03971 Monomeric isocitrate dehydrogenase CUC60_011655 PF00849 RNA pseudouridylate synthase CUC60_011660 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC60_011685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_011685 PF03466 LysR substrate binding domain CUC60_011695 PF02567 Phenazine biosynthesis-like protein CUC60_011725 PF02581 Thiamine monophosphate synthase CUC60_011730 PF00202 Aminotransferase class-III CUC60_011740 PF00849 RNA pseudouridylate synthase CUC60_011745 PF12137 RNA polymerase recycling family C-terminal CUC60_011745 PF00271 Helicase conserved C-terminal domain CUC60_011745 PF18337 RapA N-terminal Tudor like domain CUC60_011745 PF00176 SNF2 family N-terminal domain CUC60_011745 PF18339 RapA N-terminal Tudor like domain 1 CUC60_011755 PF00440 Bacterial regulatory proteins, tetR family CUC60_011760 PF00175 Oxidoreductase NAD-binding domain CUC60_011760 PF00111 2Fe-2S iron-sulfur cluster binding domain CUC60_011760 PF00970 Oxidoreductase FAD-binding domain CUC60_011765 PF00487 Fatty acid desaturase CUC60_011775 PF00440 Bacterial regulatory proteins, tetR family CUC60_011775 PF17754 MftR C-terminal domain CUC60_011785 PF00202 Aminotransferase class-III CUC60_011795 PF00171 Aldehyde dehydrogenase family CUC60_011800 PF01037 Lrp/AsnC ligand binding domain CUC60_011805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC60_011805 PF00205 Thiamine pyrophosphate enzyme, central domain CUC60_011805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC60_011810 PF00324 Amino acid permease CUC60_011815 PF12849 PBP superfamily domain CUC60_011820 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_011825 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_011830 PF00005 ABC transporter CUC60_011835 PF01343 Peptidase family S49 CUC60_011835 PF08496 Peptidase family S49 N-terminal CUC60_011850 PF08328 Adenylosuccinate lyase C-terminal CUC60_011850 PF00206 Lyase CUC60_011855 PF04356 Protein of unknown function (DUF489) CUC60_011865 PF13344 Haloacid dehalogenase-like hydrolase CUC60_011865 PF00293 NUDIX domain CUC60_011870 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_011875 PF07943 Penicillin-binding protein 5, C-terminal domain CUC60_011875 PF00768 D-alanyl-D-alanine carboxypeptidase CUC60_011890 PF01975 Survival protein SurE CUC60_011895 PF01551 Peptidase family M23 CUC60_011895 PF01476 LysM domain CUC60_011900 PF03466 LysR substrate binding domain CUC60_011900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_011905 PF13654 AAA domain CUC60_011905 PF05362 Lon protease (S16) C-terminal proteolytic domain CUC60_011910 PF07690 Major Facilitator Superfamily CUC60_011915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC60_011920 PF13593 SBF-like CPA transporter family (DUF4137) CUC60_011925 PF01197 Ribosomal protein L31 CUC60_011940 PF04055 Radical SAM superfamily CUC60_011945 PF09285 Elongation factor P, C-terminal CUC60_011945 PF08207 Elongation factor P (EF-P) KOW-like domain CUC60_011945 PF01132 Elongation factor P (EF-P) OB domain CUC60_011950 PF13722 5TM C-terminal transporter carbon starvation CstA CUC60_011950 PF02554 Carbon starvation protein CstA CUC60_011955 PF04328 Selenoprotein, putative CUC60_011990 PF06018 CodY GAF-like domain CUC60_011990 PF17853 GGDEF-like domain CUC60_011990 PF13556 PucR C-terminal helix-turn-helix domain CUC60_012005 PF00171 Aldehyde dehydrogenase family CUC60_012010 PF00324 Amino acid permease CUC60_012015 PF03466 LysR substrate binding domain CUC60_012015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_012020 PF02028 BCCT, betaine/carnitine/choline family transporter CUC60_012025 PF02028 BCCT, betaine/carnitine/choline family transporter CUC60_012030 PF00355 Rieske [2Fe-2S] domain CUC60_012030 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CUC60_012040 PF18113 Rubredoxin binding C-terminal domain CUC60_012040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_012045 PF01266 FAD dependent oxidoreductase CUC60_012045 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CUC60_012065 PF00892 EamA-like transporter family CUC60_012075 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CUC60_012080 PF00083 Sugar (and other) transporter CUC60_012085 PF13378 Enolase C-terminal domain-like CUC60_012085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CUC60_012090 PF00698 Acyl transferase domain CUC60_012090 PF14765 Polyketide synthase dehydratase CUC60_012090 PF00550 Phosphopantetheine attachment site CUC60_012090 PF08659 KR domain CUC60_012090 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC60_012090 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC60_012090 PF16197 Ketoacyl-synthetase C-terminal extension CUC60_012090 PF09277 Erythronolide synthase, docking CUC60_012090 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_012090 PF08990 Erythronolide synthase docking CUC60_012095 PF00440 Bacterial regulatory proteins, tetR family CUC60_012115 PF17954 Quercetinase C-terminal cupin domain CUC60_012115 PF02678 Pirin CUC60_012125 PF08348 YheO-like PAS domain CUC60_012125 PF13309 HTH domain CUC60_012135 PF00668 Condensation domain CUC60_012135 PF13193 AMP-binding enzyme C-terminal domain CUC60_012135 PF00550 Phosphopantetheine attachment site CUC60_012135 PF00501 AMP-binding enzyme CUC60_012140 PF00501 AMP-binding enzyme CUC60_012140 PF00668 Condensation domain CUC60_012140 PF00550 Phosphopantetheine attachment site CUC60_012140 PF00975 Thioesterase domain CUC60_012140 PF13193 AMP-binding enzyme C-terminal domain CUC60_012145 PF01032 FecCD transport family CUC60_012150 PF01032 FecCD transport family CUC60_012155 PF00005 ABC transporter CUC60_012160 PF01497 Periplasmic binding protein CUC60_012170 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CUC60_012175 PF00668 Condensation domain CUC60_012175 PF00501 AMP-binding enzyme CUC60_012175 PF00550 Phosphopantetheine attachment site CUC60_012180 PF00501 AMP-binding enzyme CUC60_012180 PF13193 AMP-binding enzyme C-terminal domain CUC60_012185 PF00550 Phosphopantetheine attachment site CUC60_012185 PF00857 Isochorismatase family CUC60_012190 PF00282 Pyridoxal-dependent decarboxylase conserved domain CUC60_012200 PF00005 ABC transporter CUC60_012200 PF00664 ABC transporter transmembrane region CUC60_012205 PF00664 ABC transporter transmembrane region CUC60_012205 PF00005 ABC transporter CUC60_012210 PF00975 Thioesterase domain CUC60_012220 PF00425 chorismate binding enzyme CUC60_012230 PF01208 Uroporphyrinogen decarboxylase (URO-D) CUC60_012235 PF05675 Protein of unknown function (DUF817) CUC60_012250 PF00144 Beta-lactamase CUC60_012265 PF01799 [2Fe-2S] binding domain CUC60_012265 PF00111 2Fe-2S iron-sulfur cluster binding domain CUC60_012290 PF00591 Glycosyl transferase family, a/b domain CUC60_012290 PF02885 Glycosyl transferase family, helical bundle domain CUC60_012295 PF00593 TonB dependent receptor CUC60_012295 PF07715 TonB-dependent Receptor Plug Domain CUC60_012305 PF00117 Glutamine amidotransferase class-I CUC60_012635 PF00589 Phage integrase family CUC60_012635 PF13356 Arm DNA-binding domain CUC60_012645 PF00854 POT family CUC60_012655 PF04345 Chorismate lyase CUC60_012695 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CUC60_012695 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CUC60_012705 PF13180 PDZ domain CUC60_012710 PF12627 Probable RNA and SrmB- binding site of polymerase A CUC60_012710 PF01743 Poly A polymerase head domain CUC60_012715 PF03949 Malic enzyme, NAD binding domain CUC60_012715 PF01515 Phosphate acetyl/butaryl transferase CUC60_012715 PF00390 Malic enzyme, N-terminal domain CUC60_012725 PF04452 RNA methyltransferase CUC60_012730 PF02219 Methylenetetrahydrofolate reductase CUC60_012735 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CUC60_012735 PF05221 S-adenosyl-L-homocysteine hydrolase CUC60_012750 PF09317 Domain of unknown function (DUF1974) CUC60_012750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_012750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_012755 PF04055 Radical SAM superfamily CUC60_012760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_012760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC60_012770 PF07690 Major Facilitator Superfamily CUC60_012780 PF00557 Metallopeptidase family M24 CUC60_012785 PF00318 Ribosomal protein S2 CUC60_012790 PF00889 Elongation factor TS CUC60_012800 PF12833 Helix-turn-helix domain CUC60_012820 PF05036 Sporulation related domain CUC60_012820 PF03330 Lytic transglycolase CUC60_012825 PF13406 Transglycosylase SLT domain CUC60_012830 PF01098 Cell cycle protein CUC60_012840 PF14489 QueF-like protein CUC60_012840 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CUC60_012845 PF01061 ABC-2 type transporter CUC60_012850 PF00005 ABC transporter CUC60_012880 PF00464 Serine hydroxymethyltransferase CUC60_012885 PF02321 Outer membrane efflux protein CUC60_012890 PF00873 AcrB/AcrD/AcrF family CUC60_012895 PF13533 Biotin-lipoyl like CUC60_012900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_012900 PF03466 LysR substrate binding domain CUC60_012905 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC60_012910 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_012915 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_012925 PF00893 Small Multidrug Resistance protein CUC60_012930 PF00037 4Fe-4S binding domain CUC60_012940 PF00392 Bacterial regulatory proteins, gntR family CUC60_012940 PF00155 Aminotransferase class I and II CUC60_012945 PF02567 Phenazine biosynthesis-like protein CUC60_012950 PF00970 Oxidoreductase FAD-binding domain CUC60_012950 PF00175 Oxidoreductase NAD-binding domain CUC60_012955 PF01980 tRNA-methyltransferase O CUC60_012955 PF18389 TrmO C-terminal domain CUC60_012965 PF00437 Type II/IV secretion system protein CUC60_012975 PF00072 Response regulator receiver domain CUC60_012975 PF00486 Transcriptional regulatory protein, C terminal CUC60_012980 PF00512 His Kinase A (phospho-acceptor) domain CUC60_012980 PF08521 Two-component sensor kinase N-terminal CUC60_012980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_012990 PF00293 NUDIX domain CUC60_013005 PF01513 ATP-NAD kinase CUC60_013010 PF07023 Protein of unknown function (DUF1315) CUC60_013015 PF02885 Glycosyl transferase family, helical bundle domain CUC60_013015 PF00591 Glycosyl transferase family, a/b domain CUC60_013025 PF00375 Sodium:dicarboxylate symporter family CUC60_013030 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_013030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_013030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_013035 PF00756 Putative esterase CUC60_013040 PF01817 Chorismate mutase type II CUC60_013040 PF00800 Prephenate dehydratase CUC60_013040 PF01842 ACT domain CUC60_013045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC60_013055 PF07687 Peptidase dimerisation domain CUC60_013055 PF01546 Peptidase family M20/M25/M40 CUC60_013060 PF12706 Beta-lactamase superfamily domain CUC60_013070 PF03883 Peroxide stress protein YaaA CUC60_013080 PF05690 Thiazole biosynthesis protein ThiG CUC60_013090 PF04241 Protein of unknown function (DUF423) CUC60_013095 PF00140 Sigma-70 factor, region 1.2 CUC60_013095 PF04542 Sigma-70 region 2 CUC60_013095 PF04545 Sigma-70, region 4 CUC60_013105 PF00313 'Cold-shock' DNA-binding domain CUC60_013110 PF00270 DEAD/DEAH box helicase CUC60_013110 PF00271 Helicase conserved C-terminal domain CUC60_013120 PF00881 Nitroreductase family CUC60_013125 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CUC60_013125 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CUC60_013145 PF01180 Dihydroorotate dehydrogenase CUC60_013150 PF02674 Colicin V production protein CUC60_013155 PF00156 Phosphoribosyl transferase domain CUC60_013170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC60_013170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC60_013175 PF01435 Peptidase family M48 CUC60_013180 PF09424 Yqey-like protein CUC60_013185 PF01165 Ribosomal protein S21 CUC60_013190 PF00814 Glycoprotease family CUC60_013240 PF00202 Aminotransferase class-III CUC60_013245 PF00171 Aldehyde dehydrogenase family CUC60_013250 PF00324 Amino acid permease CUC60_013280 PF04076 Bacterial OB fold (BOF) protein CUC60_013305 PF00561 alpha/beta hydrolase fold CUC60_013310 PF03616 Sodium/glutamate symporter CUC60_013320 PF00392 Bacterial regulatory proteins, gntR family CUC60_013320 PF07729 FCD domain CUC60_013370 PF08946 Osmosensory transporter coiled coil CUC60_013370 PF00083 Sugar (and other) transporter CUC60_013395 PF00155 Aminotransferase class I and II CUC60_013400 PF02080 TrkA-C domain CUC60_013400 PF06826 Predicted Permease Membrane Region CUC60_013410 PF04403 Paraquat-inducible protein A CUC60_013415 PF02470 MlaD protein CUC60_013425 PF01177 Asp/Glu/Hydantoin racemase CUC60_013430 PF00892 EamA-like transporter family CUC60_013445 PF13610 DDE domain CUC60_013465 PF13610 DDE domain CUC60_013470 PF13610 DDE domain CUC60_013520 PF00324 Amino acid permease CUC60_013525 PF01266 FAD dependent oxidoreductase CUC60_013530 PF00324 Amino acid permease CUC60_013540 PF00392 Bacterial regulatory proteins, gntR family CUC60_013540 PF07729 FCD domain CUC60_013550 PF00171 Aldehyde dehydrogenase family CUC60_013560 PF00202 Aminotransferase class-III CUC60_013565 PF04958 Arginine N-succinyltransferase beta subunit CUC60_013570 PF00324 Amino acid permease CUC60_013580 PF02796 Helix-turn-helix domain of resolvase CUC60_013580 PF00239 Resolvase, N terminal domain CUC60_013600 PF00106 short chain dehydrogenase CUC60_013610 PF17932 Tetracyclin repressor-like, C-terminal domain CUC60_013610 PF00440 Bacterial regulatory proteins, tetR family CUC60_013615 PF17954 Quercetinase C-terminal cupin domain CUC60_013615 PF02678 Pirin CUC60_013625 PF00106 short chain dehydrogenase CUC60_013630 PF00743 Flavin-binding monooxygenase-like CUC60_013640 PF00860 Permease family CUC60_013645 PF00962 Adenosine/AMP deaminase CUC60_013650 PF01292 Prokaryotic cytochrome b561 CUC60_013660 PF01351 Ribonuclease HII CUC60_013665 PF02599 Global regulator protein family CUC60_013670 PF13840 ACT domain CUC60_013670 PF01842 ACT domain CUC60_013670 PF00696 Amino acid kinase family CUC60_013675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC60_013675 PF02272 DHHA1 domain CUC60_013675 PF01411 tRNA synthetases class II (A) CUC60_013680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CUC60_013680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CUC60_013685 PF13393 Histidyl-tRNA synthetase CUC60_013690 PF00709 Adenylosuccinate synthetase CUC60_013705 PF00248 Aldo/keto reductase family CUC60_013715 PF00027 Cyclic nucleotide-binding domain CUC60_013715 PF13545 Crp-like helix-turn-helix domain CUC60_013720 PF02566 OsmC-like protein CUC60_013735 PF07724 AAA domain (Cdc48 subfamily) CUC60_013735 PF02861 Clp amino terminal domain, pathogenicity island component CUC60_013735 PF10431 C-terminal, D2-small domain, of ClpB protein CUC60_013735 PF00004 ATPase family associated with various cellular activities (AAA) CUC60_013735 PF17871 AAA lid domain CUC60_013750 PF10672 S-adenosylmethionine-dependent methyltransferase CUC60_013750 PF02926 THUMP domain CUC60_013750 PF01170 Putative RNA methylase family UPF0020 CUC60_013760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUC60_013760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUC60_013765 PF01979 Amidohydrolase family CUC60_013770 PF13488 Glycine zipper CUC60_013770 PF00691 OmpA family CUC60_013780 PF13417 Glutathione S-transferase, N-terminal domain CUC60_013780 PF00043 Glutathione S-transferase, C-terminal domain CUC60_013785 PF02390 Putative methyltransferase CUC60_013805 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_013805 PF13192 Thioredoxin domain CUC60_013830 PF00578 AhpC/TSA family CUC60_013830 PF10417 C-terminal domain of 1-Cys peroxiredoxin CUC60_013835 PF11898 Domain of unknown function (DUF3418) CUC60_013835 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CUC60_013835 PF04408 Helicase associated domain (HA2) CUC60_013835 PF00271 Helicase conserved C-terminal domain CUC60_013835 PF00270 DEAD/DEAH box helicase CUC60_013840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CUC60_013840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CUC60_013855 PF03594 Benzoate membrane transport protein CUC60_013860 PF00106 short chain dehydrogenase CUC60_013865 PF00175 Oxidoreductase NAD-binding domain CUC60_013865 PF00970 Oxidoreductase FAD-binding domain CUC60_013865 PF00111 2Fe-2S iron-sulfur cluster binding domain CUC60_013870 PF00866 Ring hydroxylating beta subunit CUC60_013875 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CUC60_013875 PF00355 Rieske [2Fe-2S] domain CUC60_013880 PF03466 LysR substrate binding domain CUC60_013880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_013885 PF00403 Heavy-metal-associated domain CUC60_013895 PF00376 MerR family regulatory protein CUC60_013895 PF09278 MerR, DNA binding CUC60_013935 PF02601 Exonuclease VII, large subunit CUC60_013935 PF13742 OB-fold nucleic acid binding domain CUC60_013970 PF01810 LysE type translocator CUC60_013975 PF00313 'Cold-shock' DNA-binding domain CUC60_013985 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC60_013985 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC60_014015 PF07690 Major Facilitator Superfamily CUC60_014020 PF01638 HxlR-like helix-turn-helix CUC60_014050 PF09190 DALR domain CUC60_014050 PF01406 tRNA synthetases class I (C) catalytic domain CUC60_014055 PF00571 CBS domain CUC60_014055 PF01380 SIS domain CUC60_014070 PF03968 OstA-like protein CUC60_014075 PF00005 ABC transporter CUC60_014075 PF12399 Branched-chain amino acid ATP-binding cassette transporter CUC60_014080 PF02321 Outer membrane efflux protein CUC60_014085 PF00005 ABC transporter CUC60_014085 PF03412 Peptidase C39 family CUC60_014085 PF00664 ABC transporter transmembrane region CUC60_014095 PF01205 Uncharacterized protein family UPF0029 CUC60_014100 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_014110 PF01596 O-methyltransferase CUC60_014120 PF00037 4Fe-4S binding domain CUC60_014120 PF11953 Domain of unknown function (DUF3470) CUC60_014130 PF05192 MutS domain III CUC60_014130 PF05188 MutS domain II CUC60_014130 PF05190 MutS family domain IV CUC60_014130 PF00488 MutS domain V CUC60_014130 PF01624 MutS domain I CUC60_014135 PF01037 Lrp/AsnC ligand binding domain CUC60_014140 PF00892 EamA-like transporter family CUC60_014150 PF03279 Bacterial lipid A biosynthesis acyltransferase CUC60_014165 PF07690 Major Facilitator Superfamily CUC60_014185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CUC60_014185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CUC60_014205 PF13419 Haloacid dehalogenase-like hydrolase CUC60_014220 PF16671 Actin cross-linking domain CUC60_014220 PF04717 Type VI secretion system, phage-baseplate injector CUC60_014225 PF14220 Domain of unknown function (DUF4329) CUC60_014225 PF03527 RHS protein CUC60_014225 PF05593 RHS Repeat CUC60_014240 PF03466 LysR substrate binding domain CUC60_014240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_014245 PF01566 Natural resistance-associated macrophage protein CUC60_014250 PF03746 LamB/YcsF family CUC60_014255 PF07286 Protein of unknown function (DUF1445) CUC60_014265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC60_014265 PF02785 Biotin carboxylase C-terminal domain CUC60_014265 PF00289 Biotin carboxylase, N-terminal domain CUC60_014265 PF00364 Biotin-requiring enzyme CUC60_014270 PF00654 Voltage gated chloride channel CUC60_014290 PF00440 Bacterial regulatory proteins, tetR family CUC60_014300 PF13823 Alcohol dehydrogenase GroES-associated CUC60_014300 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_014300 PF00107 Zinc-binding dehydrogenase CUC60_014315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC60_014315 PF00289 Biotin carboxylase, N-terminal domain CUC60_014315 PF02785 Biotin carboxylase C-terminal domain CUC60_014320 PF02525 Flavodoxin-like fold CUC60_014340 PF01402 Ribbon-helix-helix protein, copG family CUC60_014340 PF08753 NikR C terminal nickel binding domain CUC60_014345 PF01425 Amidase CUC60_014350 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC60_014355 PF00005 ABC transporter CUC60_014425 PF01389 OmpA-like transmembrane domain CUC60_014425 PF00691 OmpA family CUC60_014435 PF07724 AAA domain (Cdc48 subfamily) CUC60_014435 PF17871 AAA lid domain CUC60_014435 PF00004 ATPase family associated with various cellular activities (AAA) CUC60_014435 PF10431 C-terminal, D2-small domain, of ClpB protein CUC60_014465 PF03466 LysR substrate binding domain CUC60_014465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_014475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC60_014480 PF07690 Major Facilitator Superfamily CUC60_014495 PF02677 Epoxyqueuosine reductase QueH CUC60_014510 PF09278 MerR, DNA binding CUC60_014510 PF00376 MerR family regulatory protein CUC60_014525 PF00701 Dihydrodipicolinate synthetase family CUC60_014535 PF00392 Bacterial regulatory proteins, gntR family CUC60_014540 PF05544 Proline racemase CUC60_014545 PF01266 FAD dependent oxidoreductase CUC60_014555 PF04324 BFD-like [2Fe-2S] binding domain CUC60_014555 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_014565 PF00083 Sugar (and other) transporter CUC60_014570 PF00171 Aldehyde dehydrogenase family CUC60_014575 PF13520 Amino acid permease CUC60_014580 PF03313 Serine dehydratase alpha chain CUC60_014580 PF03315 Serine dehydratase beta chain CUC60_014585 PF00171 Aldehyde dehydrogenase family CUC60_014585 PF01575 MaoC like domain CUC60_014590 PF05138 Phenylacetic acid catabolic protein CUC60_014595 PF06243 Phenylacetic acid degradation B CUC60_014600 PF05138 Phenylacetic acid catabolic protein CUC60_014605 PF01883 Iron-sulfur cluster assembly protein CUC60_014610 PF00175 Oxidoreductase NAD-binding domain CUC60_014610 PF00970 Oxidoreductase FAD-binding domain CUC60_014610 PF00111 2Fe-2S iron-sulfur cluster binding domain CUC60_014615 PF00378 Enoyl-CoA hydratase/isomerase CUC60_014620 PF00378 Enoyl-CoA hydratase/isomerase CUC60_014625 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CUC60_014625 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CUC60_014625 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CUC60_014630 PF00108 Thiolase, N-terminal domain CUC60_014630 PF02803 Thiolase, C-terminal domain CUC60_014635 PF00501 AMP-binding enzyme CUC60_014635 PF14535 AMP-binding enzyme C-terminal domain CUC60_014640 PF07848 PaaX-like protein CUC60_014640 PF08223 PaaX-like protein C-terminal domain CUC60_014645 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_014650 PF03061 Thioesterase superfamily CUC60_014690 PF00199 Catalase CUC60_014695 PF01292 Prokaryotic cytochrome b561 CUC60_014715 PF12697 Alpha/beta hydrolase family CUC60_014720 PF01613 Flavin reductase like domain CUC60_014725 PF00296 Luciferase-like monooxygenase CUC60_014730 PF00171 Aldehyde dehydrogenase family CUC60_014740 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CUC60_014750 PF00171 Aldehyde dehydrogenase family CUC60_014755 PF02627 Carboxymuconolactone decarboxylase family CUC60_014760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_014760 PF03466 LysR substrate binding domain CUC60_014765 PF02525 Flavodoxin-like fold CUC60_014770 PF09339 IclR helix-turn-helix domain CUC60_014770 PF01614 Bacterial transcriptional regulator CUC60_014775 PF01494 FAD binding domain CUC60_014780 PF07702 UTRA domain CUC60_014780 PF00392 Bacterial regulatory proteins, gntR family CUC60_014790 PF08402 TOBE domain CUC60_014790 PF00005 ABC transporter CUC60_014795 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_014800 PF01266 FAD dependent oxidoreductase CUC60_014805 PF00266 Aminotransferase class-V CUC60_014810 PF13419 Haloacid dehalogenase-like hydrolase CUC60_014815 PF07690 Major Facilitator Superfamily CUC60_014820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_014820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_014820 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_014825 PF02515 CoA-transferase family III CUC60_014830 PF09339 IclR helix-turn-helix domain CUC60_014835 PF00378 Enoyl-CoA hydratase/isomerase CUC60_014840 PF03060 Nitronate monooxygenase CUC60_014845 PF07690 Major Facilitator Superfamily CUC60_014850 PF09339 IclR helix-turn-helix domain CUC60_014855 PF00108 Thiolase, N-terminal domain CUC60_014855 PF02803 Thiolase, C-terminal domain CUC60_014860 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CUC60_014860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CUC60_014860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CUC60_014870 PF00378 Enoyl-CoA hydratase/isomerase CUC60_014875 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_014875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_014875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_014880 PF07690 Major Facilitator Superfamily CUC60_014885 PF01144 Coenzyme A transferase CUC60_014890 PF01144 Coenzyme A transferase CUC60_014900 PF07690 Major Facilitator Superfamily CUC60_014910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_014910 PF12806 Acetyl-CoA dehydrogenase C-terminal like CUC60_014910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_014910 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_014925 PF03466 LysR substrate binding domain CUC60_014925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_014930 PF00682 HMGL-like CUC60_014935 PF02785 Biotin carboxylase C-terminal domain CUC60_014935 PF00364 Biotin-requiring enzyme CUC60_014935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC60_014935 PF00289 Biotin carboxylase, N-terminal domain CUC60_014940 PF00378 Enoyl-CoA hydratase/isomerase CUC60_014945 PF01039 Carboxyl transferase domain CUC60_014950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_014950 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_014950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_014955 PF00440 Bacterial regulatory proteins, tetR family CUC60_014960 PF00501 AMP-binding enzyme CUC60_014960 PF13193 AMP-binding enzyme C-terminal domain CUC60_014980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_014980 PF03466 LysR substrate binding domain CUC60_015010 PF18146 Damage-inducible protein CinA KH domain CUC60_015010 PF00994 Probable molybdopterin binding domain CUC60_015010 PF02464 Competence-damaged protein CUC60_015020 PF18011 C-terminal domain found in long catalases CUC60_015020 PF06628 Catalase-related immune-responsive CUC60_015020 PF00199 Catalase CUC60_015045 PF00717 Peptidase S24-like CUC60_015055 PF13404 AsnC-type helix-turn-helix domain CUC60_015055 PF01037 Lrp/AsnC ligand binding domain CUC60_015065 PF00072 Response regulator receiver domain CUC60_015065 PF09308 LuxQ, periplasmic CUC60_015065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_015065 PF00512 His Kinase A (phospho-acceptor) domain CUC60_015070 PF00072 Response regulator receiver domain CUC60_015085 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_015090 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_015095 PF00005 ABC transporter CUC60_015100 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC60_015105 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC60_015115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_015115 PF03466 LysR substrate binding domain CUC60_015120 PF01810 LysE type translocator CUC60_015125 PF00266 Aminotransferase class-V CUC60_015135 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_015140 PF00581 Rhodanese-like domain CUC60_015150 PF03466 LysR substrate binding domain CUC60_015150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_015155 PF02798 Glutathione S-transferase, N-terminal domain CUC60_015160 PF14834 Glutathione S-transferase, C-terminal domain CUC60_015160 PF02798 Glutathione S-transferase, N-terminal domain CUC60_015165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_015165 PF03466 LysR substrate binding domain CUC60_015170 PF03788 LrgA family CUC60_015175 PF04172 LrgB-like family CUC60_015180 PF00155 Aminotransferase class I and II CUC60_015180 PF00392 Bacterial regulatory proteins, gntR family CUC60_015195 PF07690 Major Facilitator Superfamily CUC60_015200 PF16957 Malonate decarboxylase, alpha subunit, transporter CUC60_015205 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CUC60_015210 PF06857 Malonate decarboxylase delta subunit (MdcD) CUC60_015215 PF01039 Carboxyl transferase domain CUC60_015225 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CUC60_015230 PF00698 Acyl transferase domain CUC60_015245 PF03466 LysR substrate binding domain CUC60_015245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_015250 PF00392 Bacterial regulatory proteins, gntR family CUC60_015250 PF00155 Aminotransferase class I and II CUC60_015260 PF02322 Cytochrome bd terminal oxidase subunit II CUC60_015265 PF01654 Cytochrome bd terminal oxidase subunit I CUC60_015280 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CUC60_015280 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_015280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_015285 PF00296 Luciferase-like monooxygenase CUC60_015290 PF00083 Sugar (and other) transporter CUC60_015300 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CUC60_015305 PF00005 ABC transporter CUC60_015310 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_015315 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CUC60_015320 PF01177 Asp/Glu/Hydantoin racemase CUC60_015325 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CUC60_015335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_015335 PF03466 LysR substrate binding domain CUC60_015345 PF01979 Amidohydrolase family CUC60_015345 PF13382 Adenine deaminase C-terminal domain CUC60_015355 PF03960 ArsC family CUC60_015360 PF01022 Bacterial regulatory protein, arsR family CUC60_015365 PF01758 Sodium Bile acid symporter family CUC60_015370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_015370 PF03466 LysR substrate binding domain CUC60_015385 PF13192 Thioredoxin domain CUC60_015385 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_015400 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_015405 PF00588 SpoU rRNA Methylase family CUC60_015410 PF07733 Bacterial DNA polymerase III alpha NTPase domain CUC60_015410 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CUC60_015410 PF14579 Helix-hairpin-helix motif CUC60_015410 PF02811 PHP domain CUC60_015410 PF01336 OB-fold nucleic acid binding domain CUC60_015415 PF00710 Asparaginase, N-terminal CUC60_015415 PF17763 Glutaminase/Asparaginase C-terminal domain CUC60_015420 PF00375 Sodium:dicarboxylate symporter family CUC60_015425 PF00155 Aminotransferase class I and II CUC60_015430 PF01641 SelR domain CUC60_015435 PF00255 Glutathione peroxidase CUC60_015450 PF00155 Aminotransferase class I and II CUC60_015455 PF01909 Nucleotidyltransferase domain CUC60_015455 PF08335 GlnD PII-uridylyltransferase CUC60_015455 PF01966 HD domain CUC60_015460 PF02222 ATP-grasp domain CUC60_015470 PF05437 Branched-chain amino acid transport protein (AzlD) CUC60_015475 PF03591 AzlC protein CUC60_015500 PF06071 Protein of unknown function (DUF933) CUC60_015500 PF01926 50S ribosome-binding GTPase CUC60_015505 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_015510 PF00005 ABC transporter CUC60_015510 PF09383 NIL domain CUC60_015515 PF03180 NLPA lipoprotein CUC60_015520 PF03180 NLPA lipoprotein CUC60_015535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_015535 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CUC60_015550 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_015555 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_015560 PF00005 ABC transporter CUC60_015570 PF01037 Lrp/AsnC ligand binding domain CUC60_015575 PF01709 Transcriptional regulator CUC60_015585 PF00440 Bacterial regulatory proteins, tetR family CUC60_015605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_015605 PF03466 LysR substrate binding domain CUC60_015615 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CUC60_015625 PF00892 EamA-like transporter family CUC60_015650 PF00577 Outer membrane usher protein CUC60_015650 PF13953 PapC C-terminal domain CUC60_015650 PF13954 PapC N-terminal domain CUC60_015655 PF02753 Pili assembly chaperone PapD, C-terminal domain CUC60_015655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CUC60_015660 PF16970 Type-1 fimbrial protein, A CUC60_015675 PF06968 Biotin and Thiamin Synthesis associated domain CUC60_015675 PF04055 Radical SAM superfamily CUC60_015680 PF08331 Domain of unknown function (DUF1730) CUC60_015685 PF03853 YjeF-related protein N-terminus CUC60_015685 PF01256 Carbohydrate kinase CUC60_015690 PF02075 Crossover junction endodeoxyribonuclease RuvC CUC60_015705 PF00905 Penicillin binding protein transpeptidase domain CUC60_015725 PF00438 S-adenosylmethionine synthetase, N-terminal domain CUC60_015725 PF02773 S-adenosylmethionine synthetase, C-terminal domain CUC60_015725 PF02772 S-adenosylmethionine synthetase, central domain CUC60_015730 PF00456 Transketolase, thiamine diphosphate binding domain CUC60_015730 PF02780 Transketolase, C-terminal domain CUC60_015730 PF02779 Transketolase, pyrimidine binding domain CUC60_015740 PF04264 YceI-like domain CUC60_015750 PF09992 Phosphodiester glycosidase CUC60_015760 PF05958 tRNA (Uracil-5-)-methyltransferase CUC60_015765 PF04229 GrpB protein CUC60_015775 PF01037 Lrp/AsnC ligand binding domain CUC60_015780 PF00474 Sodium:solute symporter family CUC60_015785 PF02146 Sir2 family CUC60_015790 PF01597 Glycine cleavage H-protein CUC60_015795 PF12833 Helix-turn-helix domain CUC60_015795 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CUC60_015805 PF00005 ABC transporter CUC60_015805 PF00664 ABC transporter transmembrane region CUC60_015810 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CUC60_015815 PF06912 Protein of unknown function (DUF1275) CUC60_015820 PF00375 Sodium:dicarboxylate symporter family CUC60_015835 PF08007 Cupin superfamily protein CUC60_015840 PF02545 Maf-like protein CUC60_015850 PF00162 Phosphoglycerate kinase CUC60_015860 PF01116 Fructose-bisphosphate aldolase class-II CUC60_015865 PF00639 PPIC-type PPIASE domain CUC60_015865 PF09312 SurA N-terminal domain CUC60_015870 PF03968 OstA-like protein CUC60_015870 PF04453 LPS transport system D CUC60_015875 PF01636 Phosphotransferase enzyme family CUC60_015880 PF00483 Nucleotidyl transferase CUC60_015885 PF02527 rRNA small subunit methyltransferase G CUC60_015890 PF13614 AAA domain CUC60_015895 PF02195 ParB-like nuclease domain CUC60_015895 PF17762 HTH domain found in ParB protein CUC60_015900 PF01618 MotA/TolQ/ExbB proton channel family CUC60_015910 PF00664 ABC transporter transmembrane region CUC60_015910 PF00005 ABC transporter CUC60_015915 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CUC60_015920 PF02348 Cytidylyltransferase CUC60_015925 PF09115 DNA polymerase III, delta subunit, C terminal CUC60_015935 PF01026 TatD related DNase CUC60_015950 PF07963 Prokaryotic N-terminal methylation motif CUC60_015950 PF02501 Type II secretion system (T2SS), protein I CUC60_015955 PF07963 Prokaryotic N-terminal methylation motif CUC60_015955 PF11612 Type II secretion system (T2SS), protein J CUC60_015960 PF03934 Type II secretion system (T2SS), protein K CUC60_015970 PF03167 Uracil DNA glycosylase superfamily CUC60_015980 PF14437 MafB19-like deaminase CUC60_015990 PF02224 Cytidylate kinase CUC60_015995 PF00575 S1 RNA binding domain CUC60_016000 PF00216 Bacterial DNA-binding protein CUC60_016010 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CUC60_016020 PF00743 Flavin-binding monooxygenase-like CUC60_016030 PF03969 AFG1-like ATPase CUC60_016035 PF02899 Phage integrase, N-terminal SAM-like domain CUC60_016035 PF00589 Phage integrase family CUC60_016325 PF01464 Transglycosylase SLT domain CUC60_016325 PF10145 Phage-related minor tail protein CUC60_016325 PF01551 Peptidase family M23 CUC60_016405 PF05195 Aminopeptidase P, N-terminal domain CUC60_016405 PF00557 Metallopeptidase family M24 CUC60_016410 PF01494 FAD binding domain CUC60_016415 PF01494 FAD binding domain CUC60_016425 PF13411 MerR HTH family regulatory protein CUC60_016435 PF01810 LysE type translocator CUC60_016440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_016440 PF03466 LysR substrate binding domain CUC60_016450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CUC60_016455 PF02021 Uncharacterised protein family UPF0102 CUC60_016460 PF04972 BON domain CUC60_016470 PF09297 NADH pyrophosphatase zinc ribbon domain CUC60_016470 PF00293 NUDIX domain CUC60_016480 PF00929 Exonuclease CUC60_016485 PF01464 Transglycosylase SLT domain CUC60_016485 PF01476 LysM domain CUC60_016485 PF01476 LysM domain CUC60_016485 PF01464 Transglycosylase SLT domain CUC60_016490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC60_016495 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_016500 PF12911 N-terminal TM domain of oligopeptide transport permease C CUC60_016500 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_016505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC60_016505 PF00005 ABC transporter CUC60_016510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC60_016510 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_016535 PF00929 Exonuclease CUC60_016540 PF01979 Amidohydrolase family CUC60_016555 PF00764 Arginosuccinate synthase CUC60_016560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC60_016560 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_016575 PF05987 Bacterial protein of unknown function (DUF898) CUC60_016580 PF03180 NLPA lipoprotein CUC60_016595 PF16671 Actin cross-linking domain CUC60_016595 PF04717 Type VI secretion system, phage-baseplate injector CUC60_016605 PF13610 DDE domain CUC60_016615 PF01636 Phosphotransferase enzyme family CUC60_016620 PF13610 DDE domain CUC60_016635 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_016640 PF01909 Nucleotidyltransferase domain CUC60_016640 PF13427 Domain of unknown function (DUF4111) CUC60_016645 PF00893 Small Multidrug Resistance protein CUC60_016670 PF07091 Ribosomal RNA methyltransferase (FmrO) CUC60_016710 PF13610 DDE domain CUC60_016730 PF00375 Sodium:dicarboxylate symporter family CUC60_016740 PF16123 Hydroxyacylglutathione hydrolase C-terminus CUC60_016740 PF00753 Metallo-beta-lactamase superfamily CUC60_016745 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_016750 PF09383 NIL domain CUC60_016750 PF00005 ABC transporter CUC60_016755 PF03180 NLPA lipoprotein CUC60_016760 PF02843 Phosphoribosylglycinamide synthetase, C domain CUC60_016760 PF02844 Phosphoribosylglycinamide synthetase, N domain CUC60_016760 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CUC60_016765 PF01808 AICARFT/IMPCHase bienzyme CUC60_016765 PF02142 MGS-like domain CUC60_016770 PF02954 Bacterial regulatory protein, Fis family CUC60_016790 PF13932 GidA associated domain CUC60_016790 PF01134 Glucose inhibited division protein A CUC60_016810 PF01841 Transglutaminase-like superfamily CUC60_016810 PF08379 Bacterial transglutaminase-like N-terminal region CUC60_016820 PF00842 Alanine racemase, C-terminal domain CUC60_016820 PF01168 Alanine racemase, N-terminal domain CUC60_016825 PF00772 DnaB-like helicase N terminal domain CUC60_016825 PF03796 DnaB-like helicase C terminal domain CUC60_016830 PF01281 Ribosomal protein L9, N-terminal domain CUC60_016830 PF03948 Ribosomal protein L9, C-terminal domain CUC60_016835 PF01084 Ribosomal protein S18 CUC60_016840 PF01250 Ribosomal protein S6 CUC60_016845 PF01040 UbiA prenyltransferase family CUC60_016850 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CUC60_016855 PF00510 Cytochrome c oxidase subunit III CUC60_016860 PF00115 Cytochrome C and Quinol oxidase polypeptide I CUC60_016865 PF06481 COX Aromatic Rich Motif CUC60_016865 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CUC60_016875 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CUC60_016875 PF02896 PEP-utilising enzyme, TIM barrel domain CUC60_016875 PF00391 PEP-utilising enzyme, mobile domain CUC60_016880 PF03618 Kinase/pyrophosphorylase CUC60_016890 PF01522 Polysaccharide deacetylase CUC60_016890 PF14883 Hypothetical glycosyl hydrolase family 13 CUC60_016895 PF00535 Glycosyl transferase family 2 CUC60_016900 PF13994 PgaD-like protein CUC60_016910 PF00296 Luciferase-like monooxygenase CUC60_016930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_016930 PF03466 LysR substrate binding domain CUC60_016940 PF03462 PCRF domain CUC60_016940 PF00472 RF-1 domain CUC60_016945 PF17827 PrmC N-terminal domain CUC60_016945 PF13847 Methyltransferase domain CUC60_016950 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_016955 PF09084 NMT1/THI5 like CUC60_016960 PF12833 Helix-turn-helix domain CUC60_016965 PF00106 short chain dehydrogenase CUC60_016970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_016970 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_016970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_016975 PF13193 AMP-binding enzyme C-terminal domain CUC60_016975 PF00501 AMP-binding enzyme CUC60_016980 PF01613 Flavin reductase like domain CUC60_016985 PF00899 ThiF family CUC60_016990 PF03109 ABC1 family CUC60_017005 PF03814 Potassium-transporting ATPase A subunit CUC60_017015 PF02669 K+-transporting ATPase, c chain CUC60_017020 PF02702 Osmosensitive K+ channel His kinase sensor domain CUC60_017020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_017020 PF13493 Domain of unknown function (DUF4118) CUC60_017020 PF00512 His Kinase A (phospho-acceptor) domain CUC60_017025 PF00072 Response regulator receiver domain CUC60_017025 PF00486 Transcriptional regulatory protein, C terminal CUC60_017030 PF00120 Glutamine synthetase, catalytic domain CUC60_017040 PF03232 Ubiquinone biosynthesis protein COQ7 CUC60_017045 PF07690 Major Facilitator Superfamily CUC60_017050 PF07244 Surface antigen variable number repeat CUC60_017050 PF17243 POTRA domain TamA domain 1 CUC60_017050 PF01103 Surface antigen CUC60_017070 PF11791 Aconitate B N-terminal domain CUC60_017070 PF06434 Aconitate hydratase 2 N-terminus CUC60_017070 PF00330 Aconitase family (aconitate hydratase) CUC60_017080 PF00027 Cyclic nucleotide-binding domain CUC60_017080 PF00520 Ion transport protein CUC60_017085 PF07690 Major Facilitator Superfamily CUC60_017100 PF03466 LysR substrate binding domain CUC60_017100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_017105 PF04284 Protein of unknown function (DUF441) CUC60_017115 PF00849 RNA pseudouridylate synthase CUC60_017115 PF01479 S4 domain CUC60_017130 PF01479 S4 domain CUC60_017130 PF00849 RNA pseudouridylate synthase CUC60_017135 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CUC60_017140 PF01119 DNA mismatch repair protein, C-terminal domain CUC60_017140 PF08676 MutL C terminal dimerisation domain CUC60_017150 PF17209 Hfq protein CUC60_017160 PF00881 Nitroreductase family CUC60_017170 PF00149 Calcineurin-like phosphoesterase CUC60_017180 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC60_017180 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CUC60_017185 PF02540 NAD synthase CUC60_017185 PF00958 GMP synthase C terminal domain CUC60_017185 PF00117 Glutamine amidotransferase class-I CUC60_017190 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CUC60_017200 PF13520 Amino acid permease CUC60_017205 PF00171 Aldehyde dehydrogenase family CUC60_017220 PF00465 Iron-containing alcohol dehydrogenase CUC60_017225 PF05970 PIF1-like helicase CUC60_017225 PF14493 Helix-turn-helix domain CUC60_017235 PF06445 GyrI-like small molecule binding domain CUC60_017240 PF02110 Hydroxyethylthiazole kinase family CUC60_017255 PF01433 Peptidase family M1 domain CUC60_017255 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CUC60_017255 PF11940 Domain of unknown function (DUF3458) Ig-like fold CUC60_017265 PF00106 short chain dehydrogenase CUC60_017275 PF01817 Chorismate mutase type II CUC60_017295 PF00440 Bacterial regulatory proteins, tetR family CUC60_017300 PF00593 TonB dependent receptor CUC60_017300 PF07715 TonB-dependent Receptor Plug Domain CUC60_017305 PF00924 Mechanosensitive ion channel CUC60_017340 PF07715 TonB-dependent Receptor Plug Domain CUC60_017340 PF00593 TonB dependent receptor CUC60_017360 PF00005 ABC transporter CUC60_017360 PF12848 ABC transporter CUC60_017365 PF00582 Universal stress protein family CUC60_017380 PF00690 Cation transporter/ATPase, N-terminus CUC60_017380 PF00689 Cation transporting ATPase, C-terminus CUC60_017385 PF02308 MgtC family CUC60_017390 PF03594 Benzoate membrane transport protein CUC60_017395 PF01037 Lrp/AsnC ligand binding domain CUC60_017400 PF01810 LysE type translocator CUC60_017410 PF03466 LysR substrate binding domain CUC60_017410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_017420 PF02803 Thiolase, C-terminal domain CUC60_017420 PF00108 Thiolase, N-terminal domain CUC60_017445 PF07690 Major Facilitator Superfamily CUC60_017450 PF12170 DNA polymerase III tau subunit V interacting with alpha CUC60_017450 PF12169 DNA polymerase III subunits gamma and tau domain III CUC60_017450 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CUC60_017455 PF05506 Domain of unknown function (DUF756) CUC60_017455 PF04185 Phosphoesterase family CUC60_017460 PF03061 Thioesterase superfamily CUC60_017465 PF00465 Iron-containing alcohol dehydrogenase CUC60_017480 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CUC60_017480 PF01565 FAD binding domain CUC60_017495 PF01645 Conserved region in glutamate synthase CUC60_017575 PF02384 N-6 DNA Methylase CUC60_017575 PF12161 HsdM N-terminal domain CUC60_017605 PF00772 DnaB-like helicase N terminal domain CUC60_017605 PF03796 DnaB-like helicase C terminal domain CUC60_017625 PF00149 Calcineurin-like phosphoesterase CUC60_017790 PF08525 Opacity-associated protein A N-terminal motif CUC60_017790 PF01551 Peptidase family M23 CUC60_017790 PF01476 LysM domain CUC60_017855 PF08019 Phosphoethanolamine transferase EptA/EptB CUC60_017855 PF00884 Sulfatase CUC60_017860 PF12832 MFS_1 like family CUC60_017870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC60_017870 PF02785 Biotin carboxylase C-terminal domain CUC60_017870 PF00289 Biotin carboxylase, N-terminal domain CUC60_017875 PF00364 Biotin-requiring enzyme CUC60_017880 PF01220 Dehydroquinase class II CUC60_017885 PF00817 impB/mucB/samB family CUC60_017885 PF11799 impB/mucB/samB family C-terminal domain CUC60_017885 PF13438 Domain of unknown function (DUF4113) CUC60_017895 PF00005 ABC transporter CUC60_017900 PF00486 Transcriptional regulatory protein, C terminal CUC60_017900 PF00072 Response regulator receiver domain CUC60_017910 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_017910 PF13806 Rieske-like [2Fe-2S] domain CUC60_017910 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CUC60_017910 PF04324 BFD-like [2Fe-2S] binding domain CUC60_017910 PF18267 Rubredoxin NAD+ reductase C-terminal domain CUC60_017910 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CUC60_017915 PF04324 BFD-like [2Fe-2S] binding domain CUC60_017915 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CUC60_017915 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CUC60_017915 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_017915 PF18267 Rubredoxin NAD+ reductase C-terminal domain CUC60_017920 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CUC60_017920 PF00384 Molybdopterin oxidoreductase CUC60_017920 PF04324 BFD-like [2Fe-2S] binding domain CUC60_017920 PF01568 Molydopterin dinucleotide binding domain CUC60_017925 PF12804 MobA-like NTP transferase domain CUC60_017930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CUC60_017930 PF01568 Molydopterin dinucleotide binding domain CUC60_017930 PF00384 Molybdopterin oxidoreductase CUC60_017935 PF04055 Radical SAM superfamily CUC60_017935 PF06463 Molybdenum Cofactor Synthesis C CUC60_017945 PF02391 MoaE protein CUC60_017950 PF01967 MoaC family CUC60_017950 PF00994 Probable molybdopterin binding domain CUC60_017955 PF03453 MoeA N-terminal region (domain I and II) CUC60_017955 PF03454 MoeA C-terminal region (domain IV) CUC60_017955 PF00994 Probable molybdopterin binding domain CUC60_017960 PF01638 HxlR-like helix-turn-helix CUC60_017965 PF00155 Aminotransferase class I and II CUC60_017965 PF00392 Bacterial regulatory proteins, gntR family CUC60_017970 PF00892 EamA-like transporter family CUC60_017990 PF02635 DsrE/DsrF-like family CUC60_017995 PF16363 GDP-mannose 4,6 dehydratase CUC60_018000 PF10415 Fumarase C C-terminus CUC60_018000 PF00206 Lyase CUC60_018025 PF01266 FAD dependent oxidoreductase CUC60_018035 PF02542 YgbB family CUC60_018050 PF00440 Bacterial regulatory proteins, tetR family CUC60_018055 PF00072 Response regulator receiver domain CUC60_018055 PF00158 Sigma-54 interaction domain CUC60_018055 PF02954 Bacterial regulatory protein, Fis family CUC60_018060 PF00512 His Kinase A (phospho-acceptor) domain CUC60_018060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_018060 PF00989 PAS fold CUC60_018070 PF18693 TRAM domain CUC60_018070 PF04055 Radical SAM superfamily CUC60_018070 PF00919 Uncharacterized protein family UPF0004 CUC60_018075 PF00696 Amino acid kinase family CUC60_018080 PF01765 Ribosome recycling factor CUC60_018085 PF01255 Putative undecaprenyl diphosphate synthase CUC60_018095 PF13288 DXP reductoisomerase C-terminal domain CUC60_018095 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CUC60_018095 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CUC60_018100 PF17820 PDZ domain CUC60_018100 PF13180 PDZ domain CUC60_018100 PF02163 Peptidase family M50 CUC60_018105 PF01103 Surface antigen CUC60_018105 PF07244 Surface antigen variable number repeat CUC60_018115 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CUC60_018115 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_018120 PF07977 FabA-like domain CUC60_018125 PF00132 Bacterial transferase hexapeptide (six repeats) CUC60_018125 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CUC60_018140 PF02631 RecX family CUC60_018145 PF00154 recA bacterial DNA recombination protein CUC60_018150 PF01479 S4 domain CUC60_018155 PF13419 Haloacid dehalogenase-like hydrolase CUC60_018180 PF01037 Lrp/AsnC ligand binding domain CUC60_018185 PF00266 Aminotransferase class-V CUC60_018190 PF00324 Amino acid permease CUC60_018200 PF05922 Peptidase inhibitor I9 CUC60_018200 PF00082 Subtilase family CUC60_018205 PF01740 STAS domain CUC60_018205 PF00916 Sulfate permease family CUC60_018210 PF02586 SOS response associated peptidase (SRAP) CUC60_018215 PF07995 Glucose / Sorbosone dehydrogenase CUC60_018245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CUC60_018245 PF02378 Phosphotransferase system, EIIC CUC60_018250 PF00294 pfkB family carbohydrate kinase CUC60_018255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CUC60_018255 PF05524 PEP-utilising enzyme, N-terminal CUC60_018255 PF00391 PEP-utilising enzyme, mobile domain CUC60_018255 PF02896 PEP-utilising enzyme, TIM barrel domain CUC60_018255 PF00381 PTS HPr component phosphorylation site CUC60_018280 PF05525 Branched-chain amino acid transport protein CUC60_018285 PF00557 Metallopeptidase family M24 CUC60_018290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_018290 PF03466 LysR substrate binding domain CUC60_018300 PF00462 Glutaredoxin CUC60_018305 PF00202 Aminotransferase class-III CUC60_018310 PF00478 IMP dehydrogenase / GMP reductase domain CUC60_018310 PF00571 CBS domain CUC60_018335 PF02881 SRP54-type protein, helical bundle domain CUC60_018335 PF00448 SRP54-type protein, GTPase domain CUC60_018345 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CUC60_018360 PF08173 Membrane bound YbgT-like protein CUC60_018365 PF02322 Cytochrome bd terminal oxidase subunit II CUC60_018370 PF01654 Cytochrome bd terminal oxidase subunit I CUC60_018385 PF07290 Protein of unknown function (DUF1449) CUC60_018395 PF00294 pfkB family carbohydrate kinase CUC60_018400 PF00593 TonB dependent receptor CUC60_018400 PF07715 TonB-dependent Receptor Plug Domain CUC60_018405 PF08367 Peptidase M16C associated CUC60_018405 PF00675 Insulinase (Peptidase family M16) CUC60_018405 PF05193 Peptidase M16 inactive domain CUC60_018410 PF02253 Phospholipase A1 CUC60_018415 PF02386 Cation transport protein CUC60_018420 PF02080 TrkA-C domain CUC60_018420 PF02254 TrkA-N domain CUC60_018425 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_018425 PF00585 C-terminal regulatory domain of Threonine dehydratase CUC60_018430 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CUC60_018445 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUC60_018445 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC60_018455 PF02617 ATP-dependent Clp protease adaptor protein ClpS CUC60_018460 PF00004 ATPase family associated with various cellular activities (AAA) CUC60_018460 PF07724 AAA domain (Cdc48 subfamily) CUC60_018460 PF17871 AAA lid domain CUC60_018460 PF02861 Clp amino terminal domain, pathogenicity island component CUC60_018460 PF10431 C-terminal, D2-small domain, of ClpB protein CUC60_018465 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CUC60_018470 PF00793 DAHP synthetase I family CUC60_018485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC60_018485 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_018515 PF00117 Glutamine amidotransferase class-I CUC60_018515 PF06418 CTP synthase N-terminus CUC60_018520 PF00793 DAHP synthetase I family CUC60_018525 PF03952 Enolase, N-terminal domain CUC60_018525 PF00113 Enolase, C-terminal TIM barrel domain CUC60_018530 PF04239 Protein of unknown function (DUF421) CUC60_018535 PF04977 Septum formation initiator CUC60_018540 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CUC60_018545 PF01144 Coenzyme A transferase CUC60_018550 PF01144 Coenzyme A transferase CUC60_018555 PF02803 Thiolase, C-terminal domain CUC60_018555 PF00108 Thiolase, N-terminal domain CUC60_018560 PF10397 Adenylosuccinate lyase C-terminus CUC60_018560 PF00206 Lyase CUC60_018565 PF00561 alpha/beta hydrolase fold CUC60_018570 PF07690 Major Facilitator Superfamily CUC60_018575 PF02627 Carboxymuconolactone decarboxylase family CUC60_018585 PF00775 Dioxygenase CUC60_018590 PF01487 Type I 3-dehydroquinase CUC60_018600 PF04966 Carbohydrate-selective porin, OprB family CUC60_018605 PF01011 PQQ enzyme repeat CUC60_018605 PF13360 PQQ-like domain CUC60_018615 PF04143 Sulphur transport CUC60_018625 PF00753 Metallo-beta-lactamase superfamily CUC60_018635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_018635 PF03466 LysR substrate binding domain CUC60_018640 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_018640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_018640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_018655 PF00106 short chain dehydrogenase CUC60_018665 PF07690 Major Facilitator Superfamily CUC60_018675 PF01425 Amidase CUC60_018680 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CUC60_018710 PF00175 Oxidoreductase NAD-binding domain CUC60_018710 PF00111 2Fe-2S iron-sulfur cluster binding domain CUC60_018715 PF01613 Flavin reductase like domain CUC60_018720 PF12833 Helix-turn-helix domain CUC60_018720 PF02311 AraC-like ligand binding domain CUC60_018725 PF02728 Copper amine oxidase, N3 domain CUC60_018725 PF02727 Copper amine oxidase, N2 domain CUC60_018725 PF01179 Copper amine oxidase, enzyme domain CUC60_018725 PF07833 Copper amine oxidase N-terminal domain CUC60_018735 PF00171 Aldehyde dehydrogenase family CUC60_018740 PF01804 Penicillin amidase CUC60_018745 PF12146 Serine aminopeptidase, S33 CUC60_018750 PF00108 Thiolase, N-terminal domain CUC60_018750 PF02803 Thiolase, C-terminal domain CUC60_018755 PF01144 Coenzyme A transferase CUC60_018760 PF01144 Coenzyme A transferase CUC60_018765 PF04444 Catechol dioxygenase N terminus CUC60_018765 PF00775 Dioxygenase CUC60_018770 PF02426 Muconolactone delta-isomerase CUC60_018780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_018780 PF03466 LysR substrate binding domain CUC60_018790 PF07729 FCD domain CUC60_018790 PF00392 Bacterial regulatory proteins, gntR family CUC60_018795 PF00920 Dehydratase family CUC60_018800 PF07690 Major Facilitator Superfamily CUC60_018810 PF00171 Aldehyde dehydrogenase family CUC60_018830 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_018830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_018830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_018840 PF06506 Propionate catabolism activator CUC60_018840 PF02954 Bacterial regulatory protein, Fis family CUC60_018840 PF00158 Sigma-54 interaction domain CUC60_018845 PF13193 AMP-binding enzyme C-terminal domain CUC60_018845 PF00501 AMP-binding enzyme CUC60_018850 PF04341 Protein of unknown function, DUF485 CUC60_018855 PF00474 Sodium:solute symporter family CUC60_018865 PF00171 Aldehyde dehydrogenase family CUC60_018875 PF00561 alpha/beta hydrolase fold CUC60_018880 PF06628 Catalase-related immune-responsive CUC60_018880 PF00199 Catalase CUC60_018900 PF07859 alpha/beta hydrolase fold CUC60_018905 PF01047 MarR family CUC60_018910 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_018910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC60_018915 PF00106 short chain dehydrogenase CUC60_018920 PF01872 RibD C-terminal domain CUC60_018925 PF00376 MerR family regulatory protein CUC60_018925 PF09278 MerR, DNA binding CUC60_018935 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_018945 PF12706 Beta-lactamase superfamily domain CUC60_018950 PF08359 YsiA-like protein, C-terminal region CUC60_018950 PF00440 Bacterial regulatory proteins, tetR family CUC60_018960 PF00857 Isochorismatase family CUC60_018970 PF07995 Glucose / Sorbosone dehydrogenase CUC60_018975 PF00999 Sodium/hydrogen exchanger family CUC60_018975 PF02254 TrkA-N domain CUC60_018985 PF07687 Peptidase dimerisation domain CUC60_018985 PF01546 Peptidase family M20/M25/M40 CUC60_019000 PF08479 POTRA domain, ShlB-type CUC60_019000 PF17287 POTRA domain CUC60_019000 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CUC60_019005 PF04829 Pre-toxin domain with VENN motif CUC60_019005 PF13018 Extended Signal Peptide of Type V secretion system CUC60_019005 PF13332 Hemagglutinin repeat CUC60_019005 PF05860 haemagglutination activity domain CUC60_019020 PF07690 Major Facilitator Superfamily CUC60_019025 PF04909 Amidohydrolase CUC60_019040 PF08450 SMP-30/Gluconolactonase/LRE-like region CUC60_019050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_019050 PF03466 LysR substrate binding domain CUC60_019070 PF07690 Major Facilitator Superfamily CUC60_019075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC60_019075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC60_019075 PF01842 ACT domain CUC60_019080 PF03737 Aldolase/RraA CUC60_019100 PF00529 HlyD membrane-fusion protein of T1SS CUC60_019100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC60_019115 PF00171 Aldehyde dehydrogenase family CUC60_019120 PF00920 Dehydratase family CUC60_019130 PF03466 LysR substrate binding domain CUC60_019130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_019135 PF01370 NAD dependent epimerase/dehydratase family CUC60_019140 PF07690 Major Facilitator Superfamily CUC60_019145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CUC60_019145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CUC60_019150 PF06719 AraC-type transcriptional regulator N-terminus CUC60_019150 PF12833 Helix-turn-helix domain CUC60_019165 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_019165 PF00107 Zinc-binding dehydrogenase CUC60_019180 PF00005 ABC transporter CUC60_019200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CUC60_019200 PF14572 Phosphoribosyl synthetase-associated domain CUC60_019205 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CUC60_019280 PF00196 Bacterial regulatory proteins, luxR family CUC60_019285 PF01425 Amidase CUC60_019290 PF13533 Biotin-lipoyl like CUC60_019295 PF07690 Major Facilitator Superfamily CUC60_019320 PF01975 Survival protein SurE CUC60_019330 PF02824 TGS domain CUC60_019330 PF04607 Region found in RelA / SpoT proteins CUC60_019330 PF13291 ACT domain CUC60_019385 PF12146 Serine aminopeptidase, S33 CUC60_019390 PF12833 Helix-turn-helix domain CUC60_019390 PF02311 AraC-like ligand binding domain CUC60_019400 PF00512 His Kinase A (phospho-acceptor) domain CUC60_019400 PF16527 Two-component sensor protein CpxA, periplasmic domain CUC60_019400 PF00672 HAMP domain CUC60_019400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC60_019405 PF00486 Transcriptional regulatory protein, C terminal CUC60_019405 PF00072 Response regulator receiver domain CUC60_019410 PF00529 HlyD membrane-fusion protein of T1SS CUC60_019410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC60_019415 PF00873 AcrB/AcrD/AcrF family CUC60_019420 PF02321 Outer membrane efflux protein CUC60_019425 PF12146 Serine aminopeptidase, S33 CUC60_019430 PF00743 Flavin-binding monooxygenase-like CUC60_019435 PF01593 Flavin containing amine oxidoreductase CUC60_019450 PF01266 FAD dependent oxidoreductase CUC60_019470 PF16970 Type-1 fimbrial protein, A CUC60_019480 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CUC60_019480 PF02753 Pili assembly chaperone PapD, C-terminal domain CUC60_019485 PF00577 Outer membrane usher protein CUC60_019485 PF13953 PapC C-terminal domain CUC60_019485 PF13954 PapC N-terminal domain CUC60_019490 PF00419 Fimbrial protein CUC60_019500 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_019500 PF00107 Zinc-binding dehydrogenase CUC60_019510 PF00199 Catalase CUC60_019525 PF13091 PLD-like domain CUC60_019545 PF01244 Membrane dipeptidase (Peptidase family M19) CUC60_019550 PF04055 Radical SAM superfamily CUC60_019550 PF13186 Iron-sulfur cluster-binding domain CUC60_019555 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CUC60_019560 PF03070 TENA/THI-4/PQQC family CUC60_019565 PF12706 Beta-lactamase superfamily domain CUC60_019570 PF08042 PqqA family CUC60_019575 PF02503 Polyphosphate kinase middle domain CUC60_019575 PF13090 Polyphosphate kinase C-terminal domain 2 CUC60_019575 PF17941 Polyphosphate kinase C-terminal domain 1 CUC60_019575 PF13089 Polyphosphate kinase N-terminal domain CUC60_019580 PF00149 Calcineurin-like phosphoesterase CUC60_019590 PF00550 Phosphopantetheine attachment site CUC60_019590 PF00857 Isochorismatase family CUC60_019600 PF03459 TOBE domain CUC60_019600 PF00005 ABC transporter CUC60_019605 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_019615 PF03459 TOBE domain CUC60_019615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_019620 PF00355 Rieske [2Fe-2S] domain CUC60_019620 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CUC60_019625 PF00866 Ring hydroxylating beta subunit CUC60_019630 PF00175 Oxidoreductase NAD-binding domain CUC60_019630 PF00111 2Fe-2S iron-sulfur cluster binding domain CUC60_019630 PF00970 Oxidoreductase FAD-binding domain CUC60_019635 PF12833 Helix-turn-helix domain CUC60_019635 PF14525 AraC-binding-like domain CUC60_019645 PF01613 Flavin reductase like domain CUC60_019660 PF01738 Dienelactone hydrolase family CUC60_019665 PF07690 Major Facilitator Superfamily CUC60_019670 PF12833 Helix-turn-helix domain CUC60_019670 PF06719 AraC-type transcriptional regulator N-terminus CUC60_019695 PF03466 LysR substrate binding domain CUC60_019695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_019700 PF01144 Coenzyme A transferase CUC60_019705 PF01144 Coenzyme A transferase CUC60_019710 PF02667 Short chain fatty acid transporter CUC60_019715 PF02803 Thiolase, C-terminal domain CUC60_019715 PF00108 Thiolase, N-terminal domain CUC60_019720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_019720 PF03466 LysR substrate binding domain CUC60_019725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC60_019725 PF03466 LysR substrate binding domain CUC60_019740 PF00206 Lyase CUC60_019740 PF10415 Fumarase C C-terminus CUC60_019745 PF00593 TonB dependent receptor CUC60_019745 PF07715 TonB-dependent Receptor Plug Domain CUC60_019750 PF00083 Sugar (and other) transporter CUC60_019770 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_019775 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CUC60_019800 PF02525 Flavodoxin-like fold CUC60_019805 PF01638 HxlR-like helix-turn-helix CUC60_019810 PF12833 Helix-turn-helix domain CUC60_019810 PF06445 GyrI-like small molecule binding domain CUC60_019825 PF01925 Sulfite exporter TauE/SafE CUC60_019830 PF04273 Putative phosphatase (DUF442) CUC60_019830 PF00753 Metallo-beta-lactamase superfamily CUC60_019835 PF00753 Metallo-beta-lactamase superfamily CUC60_019835 PF04273 Putative phosphatase (DUF442) CUC60_019840 PF02954 Bacterial regulatory protein, Fis family CUC60_019840 PF00072 Response regulator receiver domain CUC60_019840 PF00158 Sigma-54 interaction domain CUC60_019845 PF01062 Bestrophin, RFP-TM, chloride channel CUC60_019850 PF08240 Alcohol dehydrogenase GroES-like domain CUC60_019850 PF00107 Zinc-binding dehydrogenase CUC60_019855 PF00106 short chain dehydrogenase CUC60_019860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC60_019860 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC60_019865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC60_019865 PF00364 Biotin-requiring enzyme CUC60_019865 PF02817 e3 binding domain CUC60_019870 PF02779 Transketolase, pyrimidine binding domain CUC60_019870 PF02780 Transketolase, C-terminal domain CUC60_019875 PF00676 Dehydrogenase E1 component CUC60_019895 PF08448 PAS fold CUC60_019895 PF00990 Diguanylate cyclase, GGDEF domain CUC60_019900 PF01264 Chorismate synthase CUC60_019905 PF05175 Methyltransferase small domain CUC60_019910 PF00291 Pyridoxal-phosphate dependent enzyme CUC60_019920 PF01434 Peptidase family M41 CUC60_019920 PF00004 ATPase family associated with various cellular activities (AAA) CUC60_019920 PF17862 AAA+ lid domain CUC60_019930 PF05166 YcgL domain CUC60_019950 PF01612 3'-5' exonuclease CUC60_019950 PF00570 HRDC domain CUC60_019955 PF13662 Toprim domain CUC60_019955 PF02132 RecR protein CUC60_019960 PF02575 YbaB/EbfC DNA-binding family CUC60_019970 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC60_019975 PF00561 alpha/beta hydrolase fold CUC60_019980 PF08241 Methyltransferase domain CUC60_020010 PF01230 HIT domain CUC60_020045 PF00005 ABC transporter CUC60_020050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CUC60_020060 PF02684 Lipid-A-disaccharide synthetase CUC60_020065 PF00593 TonB dependent receptor CUC60_020065 PF07715 TonB-dependent Receptor Plug Domain CUC60_020085 PF01925 Sulfite exporter TauE/SafE CUC60_020090 PF00793 DAHP synthetase I family CUC60_020095 PF02654 Cobalamin-5-phosphate synthase CUC60_020110 PF02277 Phosphoribosyltransferase CUC60_020115 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CUC60_020155 PF00593 TonB dependent receptor CUC60_020155 PF07715 TonB-dependent Receptor Plug Domain CUC60_020170 PF06276 Ferric iron reductase FhuF-like transporter CUC60_020170 PF04183 IucA / IucC family CUC60_020175 PF06276 Ferric iron reductase FhuF-like transporter CUC60_020175 PF04183 IucA / IucC family CUC60_020180 PF07690 Major Facilitator Superfamily CUC60_020185 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CUC60_020190 PF06276 Ferric iron reductase FhuF-like transporter CUC60_020190 PF04183 IucA / IucC family CUC60_020195 PF04073 Aminoacyl-tRNA editing domain CUC60_020205 PF03109 ABC1 family CUC60_020210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC60_020210 PF02770 Acyl-CoA dehydrogenase, middle domain CUC60_020210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC60_020220 PF00487 Fatty acid desaturase CUC60_020225 PF12833 Helix-turn-helix domain CUC60_020225 PF12852 Cupin CUC60_020230 PF00639 PPIC-type PPIASE domain CUC60_020230 PF09312 SurA N-terminal domain CUC60_020235 PF00216 Bacterial DNA-binding protein CUC60_020250 PF02082 Transcriptional regulator CUC60_020255 PF00266 Aminotransferase class-V CUC60_020260 PF01592 NifU-like N terminal domain CUC60_020265 PF01521 Iron-sulphur cluster biosynthesis CUC60_020270 PF07743 HSCB C-terminal oligomerisation domain CUC60_020270 PF00226 DnaJ domain CUC60_020275 PF00012 Hsp70 protein CUC60_020280 PF00111 2Fe-2S iron-sulfur cluster binding domain CUC60_020285 PF00211 Adenylate and Guanylate cyclase catalytic domain CUC60_020315 PF03737 Aldolase/RraA CUC60_020320 PF13460 NAD(P)H-binding CUC60_020325 PF01649 Ribosomal protein S20 CUC60_020335 PF00459 Inositol monophosphatase family CUC60_020350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC60_020350 PF00005 ABC transporter CUC60_020355 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_020360 PF00528 Binding-protein-dependent transport system inner membrane component CUC60_020385 PF00593 TonB dependent receptor CUC60_020385 PF07715 TonB-dependent Receptor Plug Domain CUC60_020395 PF01618 MotA/TolQ/ExbB proton channel family CUC60_020400 PF02472 Biopolymer transport protein ExbD/TolR CUC60_020405 PF02472 Biopolymer transport protein ExbD/TolR CUC60_020415 PF01274 Malate synthase CUC60_020485 PF01464 Transglycosylase SLT domain CUC60_020485 PF10145 Phage-related minor tail protein CUC60_020485 PF01551 Peptidase family M23 CUC60_020650 PF01051 Initiator Replication protein CUC60_020700 PF05973 Phage derived protein Gp49-like (DUF891) CUC60_020790 PF05973 Phage derived protein Gp49-like (DUF891) CUC60_020855 PF05973 Phage derived protein Gp49-like (DUF891) CUC60_020870 PF03389 MobA/MobL family