locus-tag class description D8O08_000090 PF13335 Magnesium chelatase, subunit ChlI C-terminal D8O08_000090 PF01078 Magnesium chelatase, subunit ChlI D8O08_000095 PF00155 Aminotransferase class I and II D8O08_000095 PF00392 Bacterial regulatory proteins, gntR family D8O08_000105 PF00701 Dihydrodipicolinate synthetase family D8O08_000115 PF03573 outer membrane porin, OprD family D8O08_000120 PF00719 Inorganic pyrophosphatase D8O08_000135 PF13193 AMP-binding enzyme C-terminal domain D8O08_000135 PF00501 AMP-binding enzyme D8O08_000140 PF00521 DNA gyrase/topoisomerase IV, subunit A D8O08_000140 PF03989 DNA gyrase C-terminal domain, beta-propeller D8O08_000145 PF07690 Major Facilitator Superfamily D8O08_000150 PF03458 UPF0126 domain D8O08_000155 PF02810 SEC-C motif D8O08_000160 PF03741 Integral membrane protein TerC family D8O08_000160 PF03471 Transporter associated domain D8O08_000165 PF03641 Possible lysine decarboxylase D8O08_000170 PF07690 Major Facilitator Superfamily D8O08_000180 PF11799 impB/mucB/samB family C-terminal domain D8O08_000180 PF00817 impB/mucB/samB family D8O08_000180 PF11798 IMS family HHH motif D8O08_000195 PF04055 Radical SAM superfamily D8O08_000195 PF08497 Radical SAM N-terminal D8O08_000195 PF11842 Domain of unknown function (DUF3362) D8O08_000215 PF03358 NADPH-dependent FMN reductase D8O08_000225 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_000260 PF00440 Bacterial regulatory proteins, tetR family D8O08_000285 PF01327 Polypeptide deformylase D8O08_000300 PF01300 Telomere recombination D8O08_000305 PF00892 EamA-like transporter family D8O08_000310 PF00440 Bacterial regulatory proteins, tetR family D8O08_000315 PF07690 Major Facilitator Superfamily D8O08_000325 PF00255 Glutathione peroxidase D8O08_000335 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D8O08_000340 PF02874 ATP synthase alpha/beta family, beta-barrel domain D8O08_000340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D8O08_000345 PF00231 ATP synthase D8O08_000350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D8O08_000350 PF00306 ATP synthase alpha/beta chain, C terminal domain D8O08_000350 PF02874 ATP synthase alpha/beta family, beta-barrel domain D8O08_000355 PF00213 ATP synthase delta (OSCP) subunit D8O08_000365 PF00137 ATP synthase subunit C D8O08_000370 PF00119 ATP synthase A chain D8O08_000390 PF00005 ABC transporter D8O08_000395 PF00950 ABC 3 transport family D8O08_000400 PF01810 LysE type translocator D8O08_000405 PF04261 Dyp-type peroxidase family D8O08_000410 PF03949 Malic enzyme, NAD binding domain D8O08_000410 PF00390 Malic enzyme, N-terminal domain D8O08_000415 PF05746 DALR anticodon binding domain D8O08_000415 PF00750 tRNA synthetases class I (R) D8O08_000415 PF03485 Arginyl tRNA synthetase N terminal domain D8O08_000435 PF02678 Pirin D8O08_000435 PF05726 Pirin C-terminal cupin domain D8O08_000445 PF03551 Transcriptional regulator PadR-like family D8O08_000450 PF01909 Nucleotidyltransferase domain D8O08_000450 PF13427 Domain of unknown function (DUF4111) D8O08_000455 PF00958 GMP synthase C terminal domain D8O08_000455 PF00117 Glutamine amidotransferase class-I D8O08_000455 PF02540 NAD synthase D8O08_000460 PF04286 Protein of unknown function (DUF445) D8O08_000465 PF07681 DoxX D8O08_000470 PF09335 SNARE associated Golgi protein D8O08_000485 PF13614 AAA domain D8O08_000495 PF01722 BolA-like protein D8O08_000510 PF01648 4'-phosphopantetheinyl transferase superfamily D8O08_000515 PF12697 Alpha/beta hydrolase family D8O08_000530 PF00501 AMP-binding enzyme D8O08_000530 PF13193 AMP-binding enzyme C-terminal domain D8O08_000530 PF00975 Thioesterase domain D8O08_000530 PF00668 Condensation domain D8O08_000530 PF00550 Phosphopantetheine attachment site D8O08_000535 PF16197 Ketoacyl-synthetase C-terminal extension D8O08_000535 PF00975 Thioesterase domain D8O08_000535 PF14765 Polyketide synthase dehydratase D8O08_000535 PF00550 Phosphopantetheine attachment site D8O08_000535 PF08242 Methyltransferase domain D8O08_000535 PF02801 Beta-ketoacyl synthase, C-terminal domain D8O08_000535 PF00109 Beta-ketoacyl synthase, N-terminal domain D8O08_000540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_000540 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_000540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_000545 PF00501 AMP-binding enzyme D8O08_000550 PF03472 Autoinducer binding domain D8O08_000550 PF00196 Bacterial regulatory proteins, luxR family D8O08_000560 PF00765 Autoinducer synthase D8O08_000565 PF00083 Sugar (and other) transporter D8O08_000565 PF07690 Major Facilitator Superfamily D8O08_000570 PF00378 Enoyl-CoA hydratase/isomerase D8O08_000575 PF00378 Enoyl-CoA hydratase/isomerase D8O08_000580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_000580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_000580 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_000585 PF13193 AMP-binding enzyme C-terminal domain D8O08_000585 PF00501 AMP-binding enzyme D8O08_000590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D8O08_000590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D8O08_000595 PF00171 Aldehyde dehydrogenase family D8O08_000605 PF00324 Amino acid permease D8O08_000610 PF00324 Amino acid permease D8O08_000615 PF01042 Endoribonuclease L-PSP D8O08_000620 PF00842 Alanine racemase, C-terminal domain D8O08_000620 PF01168 Alanine racemase, N-terminal domain D8O08_000625 PF01266 FAD dependent oxidoreductase D8O08_000630 PF01037 Lrp/AsnC ligand binding domain D8O08_000640 PF07715 TonB-dependent Receptor Plug Domain D8O08_000640 PF00593 TonB dependent receptor D8O08_000655 PF00849 RNA pseudouridylate synthase D8O08_000670 PF00872 Transposase, Mutator family D8O08_000705 PF00330 Aconitase family (aconitate hydratase) D8O08_000705 PF00694 Aconitase C-terminal domain D8O08_000710 PF00285 Citrate synthase, C-terminal domain D8O08_000720 PF07729 FCD domain D8O08_000720 PF00392 Bacterial regulatory proteins, gntR family D8O08_000730 PF00155 Aminotransferase class I and II D8O08_000735 PF01565 FAD binding domain D8O08_000735 PF09330 D-lactate dehydrogenase, membrane binding D8O08_000740 PF01070 FMN-dependent dehydrogenase D8O08_000745 PF00392 Bacterial regulatory proteins, gntR family D8O08_000745 PF07729 FCD domain D8O08_000750 PF02652 L-lactate permease D8O08_000755 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D8O08_000755 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D8O08_000755 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D8O08_000755 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D8O08_000760 PF16363 GDP-mannose 4,6 dehydratase D8O08_000765 PF00342 Phosphoglucose isomerase D8O08_000770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D8O08_000770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D8O08_000770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D8O08_000775 PF00483 Nucleotidyl transferase D8O08_000780 PF02719 Polysaccharide biosynthesis protein D8O08_000790 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D8O08_000790 PF00953 Glycosyl transferase family 4 D8O08_000795 PF01370 NAD dependent epimerase/dehydratase family D8O08_000800 PF13579 Glycosyl transferase 4-like domain D8O08_000805 PF02350 UDP-N-acetylglucosamine 2-epimerase D8O08_000810 PF01370 NAD dependent epimerase/dehydratase family D8O08_000860 PF02348 Cytidylyltransferase D8O08_000865 PF00483 Nucleotidyl transferase D8O08_000875 PF08666 SAF domain D8O08_000875 PF03102 NeuB family D8O08_000885 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D8O08_000890 PF02719 Polysaccharide biosynthesis protein D8O08_000895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D8O08_000895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D8O08_000895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D8O08_000900 PF02563 Polysaccharide biosynthesis/export protein D8O08_000900 PF10531 SLBB domain D8O08_000900 PF18412 Outer-membrane lipoprotein Wza C-terminal domain D8O08_000905 PF01451 Low molecular weight phosphotyrosine protein phosphatase D8O08_000910 PF02706 Chain length determinant protein D8O08_000910 PF13807 G-rich domain on putative tyrosine kinase D8O08_000910 PF13614 AAA domain D8O08_000915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D8O08_000915 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D8O08_000920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D8O08_000920 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D8O08_000925 PF03023 Lipid II flippase MurJ D8O08_000930 PF01510 N-acetylmuramoyl-L-alanine amidase D8O08_000935 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D8O08_000935 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D8O08_000945 PF04185 Phosphoesterase family D8O08_000945 PF05506 Domain of unknown function (DUF756) D8O08_000950 PF03725 3' exoribonuclease family, domain 2 D8O08_000950 PF01138 3' exoribonuclease family, domain 1 D8O08_000955 PF00487 Fatty acid desaturase D8O08_000960 PF00175 Oxidoreductase NAD-binding domain D8O08_000965 PF00440 Bacterial regulatory proteins, tetR family D8O08_000970 PF08360 QacR-like protein, C-terminal region D8O08_000970 PF00440 Bacterial regulatory proteins, tetR family D8O08_000975 PF01323 DSBA-like thioredoxin domain D8O08_000985 PF13419 Haloacid dehalogenase-like hydrolase D8O08_000990 PF00106 short chain dehydrogenase D8O08_001005 PF00583 Acetyltransferase (GNAT) family D8O08_001005 PF00696 Amino acid kinase family D8O08_001010 PF09084 NMT1/THI5 like D8O08_001015 PF09084 NMT1/THI5 like D8O08_001020 PF00296 Luciferase-like monooxygenase D8O08_001025 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_001030 PF00005 ABC transporter D8O08_001035 PF08362 YcdC-like protein, C-terminal region D8O08_001035 PF00440 Bacterial regulatory proteins, tetR family D8O08_001040 PF01048 Phosphorylase superfamily D8O08_001055 PF06574 FAD synthetase D8O08_001055 PF01687 Riboflavin kinase D8O08_001060 PF00133 tRNA synthetases class I (I, L, M and V) D8O08_001060 PF06827 Zinc finger found in FPG and IleRS D8O08_001060 PF08264 Anticodon-binding domain of tRNA D8O08_001070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D8O08_001110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D8O08_001115 PF07859 alpha/beta hydrolase fold D8O08_001140 PF01025 GrpE D8O08_001145 PF00012 Hsp70 protein D8O08_001165 PF13406 Transglycosylase SLT domain D8O08_001170 PF02222 ATP-grasp domain D8O08_001170 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D8O08_001175 PF00731 AIR carboxylase D8O08_001190 PF08245 Mur ligase middle domain D8O08_001190 PF02875 Mur ligase family, glutamate ligase domain D8O08_001190 PF01225 Mur ligase family, catalytic domain D8O08_001200 PF01569 PAP2 superfamily D8O08_001205 PF03741 Integral membrane protein TerC family D8O08_001220 PF00355 Rieske [2Fe-2S] domain D8O08_001225 PF01979 Amidohydrolase family D8O08_001230 PF00156 Phosphoribosyl transferase domain D8O08_001240 PF13098 Thioredoxin-like domain D8O08_001240 PF10411 Disulfide bond isomerase protein N-terminus D8O08_001245 PF16916 Dimerisation domain of Zinc Transporter D8O08_001245 PF01545 Cation efflux family D8O08_001250 PF02583 Metal-sensitive transcriptional repressor D8O08_001255 PF01926 50S ribosome-binding GTPase D8O08_001255 PF12631 MnmE helical domain D8O08_001255 PF10396 GTP-binding protein TrmE N-terminus D8O08_001260 PF14849 YidC periplasmic domain D8O08_001260 PF02096 60Kd inner membrane protein D8O08_001265 PF01809 Putative membrane protein insertion efficiency factor D8O08_001275 PF00468 Ribosomal protein L34 D8O08_001280 PF11638 DnaA N-terminal domain D8O08_001280 PF08299 Bacterial dnaA protein helix-turn-helix D8O08_001280 PF00308 Bacterial dnaA protein D8O08_001285 PF00712 DNA polymerase III beta subunit, N-terminal domain D8O08_001285 PF02768 DNA polymerase III beta subunit, C-terminal domain D8O08_001285 PF02767 DNA polymerase III beta subunit, central domain D8O08_001290 PF02463 RecF/RecN/SMC N terminal domain D8O08_001295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_001295 PF18053 DNA gyrase B subunit insert domain D8O08_001295 PF00204 DNA gyrase B D8O08_001295 PF01751 Toprim domain D8O08_001295 PF00986 DNA gyrase B subunit, carboxyl terminus D8O08_001305 PF09335 SNARE associated Golgi protein D8O08_001310 PF00005 ABC transporter D8O08_001310 PF12848 ABC transporter D8O08_001330 PF01521 Iron-sulphur cluster biosynthesis D8O08_001340 PF03702 Anhydro-N-acetylmuramic acid kinase D8O08_001345 PF00579 tRNA synthetases class I (W and Y) D8O08_001390 PF00209 Sodium:neurotransmitter symporter family D8O08_001400 PF01029 NusB family D8O08_001400 PF01189 16S rRNA methyltransferase RsmB/F D8O08_001405 PF00551 Formyl transferase D8O08_001405 PF02911 Formyl transferase, C-terminal domain D8O08_001410 PF00920 Dehydratase family D8O08_001425 PF03466 LysR substrate binding domain D8O08_001425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_001430 PF00860 Permease family D8O08_001435 PF00311 Phosphoenolpyruvate carboxylase D8O08_001440 PF00440 Bacterial regulatory proteins, tetR family D8O08_001440 PF08361 MAATS-type transcriptional repressor, C-terminal region D8O08_001445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D8O08_001450 PF00873 AcrB/AcrD/AcrF family D8O08_001460 PF00226 DnaJ domain D8O08_001460 PF01556 DnaJ C terminal domain D8O08_001460 PF00684 DnaJ central domain D8O08_001470 PF05173 Dihydrodipicolinate reductase, C-terminus D8O08_001470 PF01113 Dihydrodipicolinate reductase, N-terminus D8O08_001480 PF07690 Major Facilitator Superfamily D8O08_001485 PF00248 Aldo/keto reductase family D8O08_001490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_001490 PF03466 LysR substrate binding domain D8O08_001505 PF00155 Aminotransferase class I and II D8O08_001505 PF00392 Bacterial regulatory proteins, gntR family D8O08_001510 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_001510 PF00107 Zinc-binding dehydrogenase D8O08_001515 PF03352 Methyladenine glycosylase D8O08_001530 PF14815 NUDIX domain D8O08_001530 PF10576 Iron-sulfur binding domain of endonuclease III D8O08_001530 PF00730 HhH-GPD superfamily base excision DNA repair protein D8O08_001530 PF00633 Helix-hairpin-helix motif D8O08_001540 PF02230 Phospholipase/Carboxylesterase D8O08_001545 PF07043 Protein of unknown function (DUF1328) D8O08_001550 PF03692 Putative zinc- or iron-chelating domain D8O08_001555 PF07995 Glucose / Sorbosone dehydrogenase D8O08_001560 PF00004 ATPase family associated with various cellular activities (AAA) D8O08_001560 PF12002 MgsA AAA+ ATPase C terminal D8O08_001560 PF16193 AAA C-terminal domain D8O08_001575 PF01259 SAICAR synthetase D8O08_001585 PF00701 Dihydrodipicolinate synthetase family D8O08_001590 PF00857 Isochorismatase family D8O08_001595 PF01758 Sodium Bile acid symporter family D8O08_001600 PF01554 MatE D8O08_001605 PF04463 Protein of unknown function (DUF523) D8O08_001610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D8O08_001625 PF14497 Glutathione S-transferase, C-terminal domain D8O08_001625 PF02798 Glutathione S-transferase, N-terminal domain D8O08_001635 PF00324 Amino acid permease D8O08_001645 PF07683 Cobalamin synthesis protein cobW C-terminal domain D8O08_001645 PF02492 CobW/HypB/UreG, nucleotide-binding domain D8O08_001660 PF05962 HutD D8O08_001665 PF17392 Urocanase C-terminal domain D8O08_001665 PF17391 Urocanase N-terminal domain D8O08_001665 PF01175 Urocanase Rossmann-like domain D8O08_001670 PF00221 Aromatic amino acid lyase D8O08_001675 PF00324 Amino acid permease D8O08_001680 PF01979 Amidohydrolase family D8O08_001685 PF00491 Arginase family D8O08_001700 PF01177 Asp/Glu/Hydantoin racemase D8O08_001705 PF01380 SIS domain D8O08_001710 PF14602 Hexapeptide repeat of succinyl-transferase D8O08_001710 PF12804 MobA-like NTP transferase domain D8O08_001710 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_001715 PF04608 Phosphatidylglycerophosphatase A D8O08_001720 PF02769 AIR synthase related protein, C-terminal domain D8O08_001720 PF00586 AIR synthase related protein, N-terminal domain D8O08_001725 PF01029 NusB family D8O08_001730 PF00885 6,7-dimethyl-8-ribityllumazine synthase D8O08_001735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D8O08_001735 PF00925 GTP cyclohydrolase II D8O08_001765 PF02580 D-Tyr-tRNA(Tyr) deacylase D8O08_001780 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D8O08_001780 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D8O08_001785 PF00581 Rhodanese-like domain D8O08_001790 PF02666 Phosphatidylserine decarboxylase D8O08_001795 PF03069 Acetamidase/Formamidase family D8O08_001800 PF01547 Bacterial extracellular solute-binding protein D8O08_001810 PF00989 PAS fold D8O08_001810 PF11808 Phosphate regulon sensor protein PhoR D8O08_001810 PF00512 His Kinase A (phospho-acceptor) domain D8O08_001810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_001815 PF00486 Transcriptional regulatory protein, C terminal D8O08_001815 PF00072 Response regulator receiver domain D8O08_001825 PF00106 short chain dehydrogenase D8O08_001830 PF01554 MatE D8O08_001835 PF00155 Aminotransferase class I and II D8O08_001840 PF04286 Protein of unknown function (DUF445) D8O08_001855 PF04262 Glutamate-cysteine ligase D8O08_001860 PF02600 Disulfide bond formation protein DsbB D8O08_001865 PF04717 Type VI secretion system, phage-baseplate injector D8O08_001900 PF00118 TCP-1/cpn60 chaperonin family D8O08_001905 PF00166 Chaperonin 10 Kd subunit D8O08_001910 PF03091 CutA1 divalent ion tolerance protein D8O08_001915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D8O08_001920 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D8O08_001930 PF00753 Metallo-beta-lactamase superfamily D8O08_001955 PF05728 Uncharacterised protein family (UPF0227) D8O08_001960 PF01751 Toprim domain D8O08_001960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_001960 PF00204 DNA gyrase B D8O08_001960 PF00986 DNA gyrase B subunit, carboxyl terminus D8O08_001965 PF00106 short chain dehydrogenase D8O08_001970 PF04115 Ureidoglycolate lyase D8O08_001975 PF03561 Allantoicase repeat D8O08_001980 PF01494 FAD binding domain D8O08_001990 PF00860 Permease family D8O08_001995 PF00576 HIUase/Transthyretin family D8O08_002025 PF11412 Disulphide bond corrector protein DsbC D8O08_002025 PF02683 Cytochrome C biogenesis protein transmembrane region D8O08_002030 PF07694 5TMR of 5TMR-LYT D8O08_002030 PF00990 Diguanylate cyclase, GGDEF domain D8O08_002035 PF07859 alpha/beta hydrolase fold D8O08_002045 PF03960 ArsC family D8O08_002050 PF03372 Endonuclease/Exonuclease/phosphatase family D8O08_002070 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D8O08_002070 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D8O08_002075 PF04101 Glycosyltransferase family 28 C-terminal domain D8O08_002075 PF03033 Glycosyltransferase family 28 N-terminal domain D8O08_002080 PF08245 Mur ligase middle domain D8O08_002080 PF02875 Mur ligase family, glutamate ligase domain D8O08_002080 PF01225 Mur ligase family, catalytic domain D8O08_002085 PF01820 D-ala D-ala ligase N-terminus D8O08_002085 PF07478 D-ala D-ala ligase C-terminus D8O08_002090 PF08478 POTRA domain, FtsQ-type D8O08_002090 PF03799 Cell division protein FtsQ D8O08_002095 PF02491 SHS2 domain inserted in FTSA D8O08_002100 PF00091 Tubulin/FtsZ family, GTPase domain D8O08_002100 PF12327 FtsZ family, C-terminal domain D8O08_002105 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D8O08_002115 PF01551 Peptidase family M23 D8O08_002120 PF17831 Pyruvate dehydrogenase E1 component middle domain D8O08_002120 PF00456 Transketolase, thiamine diphosphate binding domain D8O08_002125 PF00364 Biotin-requiring enzyme D8O08_002125 PF02817 e3 binding domain D8O08_002125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D8O08_002135 PF01169 Uncharacterized protein family UPF0016 D8O08_002140 PF07715 TonB-dependent Receptor Plug Domain D8O08_002140 PF00593 TonB dependent receptor D8O08_002145 PF00258 Flavodoxin D8O08_002145 PF01613 Flavin reductase like domain D8O08_002150 PF03692 Putative zinc- or iron-chelating domain D8O08_002155 PF00478 IMP dehydrogenase / GMP reductase domain D8O08_002155 PF00571 CBS domain D8O08_002160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D8O08_002160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D8O08_002160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D8O08_002160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D8O08_002165 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D8O08_002165 PF01243 Pyridoxamine 5'-phosphate oxidase D8O08_002170 PF17768 RecJ OB domain D8O08_002170 PF01368 DHH family D8O08_002170 PF02272 DHHA1 domain D8O08_002190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D8O08_002195 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D8O08_002200 PF04452 RNA methyltransferase D8O08_002205 PF00924 Mechanosensitive ion channel D8O08_002215 PF00501 AMP-binding enzyme D8O08_002215 PF16177 Acetyl-coenzyme A synthetase N-terminus D8O08_002215 PF13193 AMP-binding enzyme C-terminal domain D8O08_002220 PF00857 Isochorismatase family D8O08_002225 PF01037 Lrp/AsnC ligand binding domain D8O08_002230 PF00296 Luciferase-like monooxygenase D8O08_002235 PF03358 NADPH-dependent FMN reductase D8O08_002240 PF00072 Response regulator receiver domain D8O08_002240 PF00196 Bacterial regulatory proteins, luxR family D8O08_002250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_002250 PF01627 Hpt domain D8O08_002250 PF00672 HAMP domain D8O08_002250 PF00512 His Kinase A (phospho-acceptor) domain D8O08_002250 PF00072 Response regulator receiver domain D8O08_002255 PF04341 Protein of unknown function, DUF485 D8O08_002260 PF00474 Sodium:solute symporter family D8O08_002270 PF02028 BCCT, betaine/carnitine/choline family transporter D8O08_002280 PF00990 Diguanylate cyclase, GGDEF domain D8O08_002280 PF17158 Membrane-associated sensor, integral membrane domain D8O08_002325 PF17755 UvrA DNA-binding domain D8O08_002325 PF00005 ABC transporter D8O08_002325 PF17760 UvrA interaction domain D8O08_002330 PF00440 Bacterial regulatory proteins, tetR family D8O08_002330 PF16925 Tetracyclin repressor-like, C-terminal domain D8O08_002335 PF00107 Zinc-binding dehydrogenase D8O08_002335 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_002345 PF06942 GlpM protein D8O08_002350 PF08543 Phosphomethylpyrimidine kinase D8O08_002350 PF02581 Thiamine monophosphate synthase D8O08_002350 PF03070 TENA/THI-4/PQQC family D8O08_002360 PF07690 Major Facilitator Superfamily D8O08_002365 PF00436 Single-strand binding protein family D8O08_002375 PF03591 AzlC protein D8O08_002385 PF00324 Amino acid permease D8O08_002390 PF00392 Bacterial regulatory proteins, gntR family D8O08_002390 PF00155 Aminotransferase class I and II D8O08_002395 PF00202 Aminotransferase class-III D8O08_002400 PF00171 Aldehyde dehydrogenase family D8O08_002405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_002410 PF00857 Isochorismatase family D8O08_002415 PF05726 Pirin C-terminal cupin domain D8O08_002415 PF02678 Pirin D8O08_002420 PF01593 Flavin containing amine oxidoreductase D8O08_002440 PF07690 Major Facilitator Superfamily D8O08_002445 PF03466 LysR substrate binding domain D8O08_002445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_002465 PF00248 Aldo/keto reductase family D8O08_002470 PF02311 AraC-like ligand binding domain D8O08_002470 PF12833 Helix-turn-helix domain D8O08_002515 PF02705 K+ potassium transporter D8O08_002540 PF00230 Major intrinsic protein D8O08_002555 PF00977 Histidine biosynthesis protein D8O08_002560 PF01636 Phosphotransferase enzyme family D8O08_002590 PF00977 Histidine biosynthesis protein D8O08_002605 PF00117 Glutamine amidotransferase class-I D8O08_002610 PF00475 Imidazoleglycerol-phosphate dehydratase D8O08_002630 PF00583 Acetyltransferase (GNAT) family D8O08_002635 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain D8O08_002635 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain D8O08_002645 PF00672 HAMP domain D8O08_002645 PF00512 His Kinase A (phospho-acceptor) domain D8O08_002645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_002650 PF00486 Transcriptional regulatory protein, C terminal D8O08_002650 PF00072 Response regulator receiver domain D8O08_002655 PF16921 Tex protein YqgF-like domain D8O08_002655 PF09371 Tex-like protein N-terminal domain D8O08_002655 PF00575 S1 RNA binding domain D8O08_002655 PF17674 HHH domain D8O08_002660 PF00916 Sulfate permease family D8O08_002660 PF01740 STAS domain D8O08_002665 PF00106 short chain dehydrogenase D8O08_002670 PF01053 Cys/Met metabolism PLP-dependent enzyme D8O08_002675 PF00005 ABC transporter D8O08_002675 PF12848 ABC transporter D8O08_002720 PF00529 HlyD membrane-fusion protein of T1SS D8O08_002720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D8O08_002725 PF00873 AcrB/AcrD/AcrF family D8O08_002730 PF01545 Cation efflux family D8O08_002760 PF00324 Amino acid permease D8O08_002775 PF00749 tRNA synthetases class I (E and Q), catalytic domain D8O08_002790 PF01795 MraW methylase family D8O08_002800 PF00905 Penicillin binding protein transpeptidase domain D8O08_002800 PF03717 Penicillin-binding Protein dimerisation domain D8O08_002805 PF08245 Mur ligase middle domain D8O08_002805 PF02875 Mur ligase family, glutamate ligase domain D8O08_002805 PF01225 Mur ligase family, catalytic domain D8O08_002810 PF01225 Mur ligase family, catalytic domain D8O08_002810 PF02875 Mur ligase family, glutamate ligase domain D8O08_002810 PF08245 Mur ligase middle domain D8O08_002815 PF00953 Glycosyl transferase family 4 D8O08_002825 PF13847 Methyltransferase domain D8O08_002830 PF00905 Penicillin binding protein transpeptidase domain D8O08_002830 PF17092 Penicillin-binding protein OB-like domain D8O08_002830 PF00912 Transglycosylase D8O08_002855 PF00263 Bacterial type II and III secretion system protein D8O08_002855 PF11741 AMIN domain D8O08_002855 PF07660 Secretin and TonB N terminus short domain D8O08_002855 PF03958 Bacterial type II/III secretion system short domain D8O08_002860 PF01202 Shikimate kinase D8O08_002865 PF01761 3-dehydroquinate synthase D8O08_002875 PF01645 Conserved region in glutamate synthase D8O08_002875 PF00310 Glutamine amidotransferases class-II D8O08_002875 PF01493 GXGXG motif D8O08_002875 PF04898 Glutamate synthase central domain D8O08_002890 PF04011 LemA family D8O08_002895 PF04536 TPM domain D8O08_002905 PF00114 Pilin (bacterial filament) D8O08_002905 PF07963 Prokaryotic N-terminal methylation motif D8O08_002915 PF11846 Virulence factor membrane-bound polymerase, C-terminal D8O08_002915 PF04932 O-Antigen ligase D8O08_002915 PF15864 Protein glycosylation ligase D8O08_002925 PF00210 Ferritin-like domain D8O08_002930 PF04324 BFD-like [2Fe-2S] binding domain D8O08_002935 PF01042 Endoribonuclease L-PSP D8O08_002950 PF01192 RNA polymerase Rpb6 D8O08_002955 PF00625 Guanylate kinase D8O08_002960 PF02401 LytB protein D8O08_003000 PF00886 Ribosomal protein S16 D8O08_003005 PF01782 RimM N-terminal domain D8O08_003005 PF05239 PRC-barrel domain D8O08_003010 PF01746 tRNA (Guanine-1)-methyltransferase D8O08_003015 PF01245 Ribosomal protein L19 D8O08_003020 PF00561 alpha/beta hydrolase fold D8O08_003025 PF03280 Proteobacterial lipase chaperone protein D8O08_003030 PF16198 tRNA pseudouridylate synthase B C-terminal domain D8O08_003030 PF01509 TruB family pseudouridylate synthase (N terminal domain) D8O08_003030 PF09157 Pseudouridine synthase II TruB, C-terminal D8O08_003035 PF01925 Sulfite exporter TauE/SafE D8O08_003045 PF00892 EamA-like transporter family D8O08_003055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D8O08_003055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D8O08_003060 PF01565 FAD binding domain D8O08_003060 PF02913 FAD linked oxidases, C-terminal domain D8O08_003070 PF03992 Antibiotic biosynthesis monooxygenase D8O08_003075 PF02525 Flavodoxin-like fold D8O08_003085 PF07690 Major Facilitator Superfamily D8O08_003090 PF12805 FUSC-like inner membrane protein yccS D8O08_003100 PF01594 AI-2E family transporter D8O08_003105 PF13614 AAA domain D8O08_003135 PF00324 Amino acid permease D8O08_003140 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D8O08_003140 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D8O08_003145 PF00202 Aminotransferase class-III D8O08_003150 PF04958 Arginine N-succinyltransferase beta subunit D8O08_003155 PF00171 Aldehyde dehydrogenase family D8O08_003160 PF04996 Succinylarginine dihydrolase D8O08_003165 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family D8O08_003200 PF03466 LysR substrate binding domain D8O08_003200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_003205 PF00892 EamA-like transporter family D8O08_003215 PF05746 DALR anticodon binding domain D8O08_003215 PF02092 Glycyl-tRNA synthetase beta subunit D8O08_003220 PF02091 Glycyl-tRNA synthetase alpha subunit D8O08_003245 PF00571 CBS domain D8O08_003250 PF04024 PspC domain D8O08_003260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_003260 PF12806 Acetyl-CoA dehydrogenase C-terminal like D8O08_003260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_003260 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_003275 PF08501 Shikimate dehydrogenase substrate binding domain D8O08_003275 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D8O08_003275 PF01488 Shikimate / quinate 5-dehydrogenase D8O08_003280 PF01218 Coproporphyrinogen III oxidase D8O08_003285 PF00925 GTP cyclohydrolase II D8O08_003290 PF02779 Transketolase, pyrimidine binding domain D8O08_003290 PF02780 Transketolase, C-terminal domain D8O08_003290 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D8O08_003295 PF00459 Inositol monophosphatase family D8O08_003300 PF00271 Helicase conserved C-terminal domain D8O08_003300 PF03880 DbpA RNA binding domain D8O08_003300 PF00270 DEAD/DEAH box helicase D8O08_003300 PF12343 Cold shock protein DEAD box A D8O08_003310 PF00005 ABC transporter D8O08_003315 PF02405 Permease MlaE D8O08_003325 PF05494 MlaC protein D8O08_003335 PF01544 CorA-like Mg2+ transporter protein D8O08_003340 PF03641 Possible lysine decarboxylase D8O08_003345 PF00293 NUDIX domain D8O08_003350 PF00156 Phosphoribosyl transferase domain D8O08_003355 PF17191 RecG wedge domain D8O08_003355 PF00271 Helicase conserved C-terminal domain D8O08_003355 PF00270 DEAD/DEAH box helicase D8O08_003370 PF01553 Acyltransferase D8O08_003380 PF00375 Sodium:dicarboxylate symporter family D8O08_003390 PF01926 50S ribosome-binding GTPase D8O08_003395 PF02082 Transcriptional regulator D8O08_003400 PF00970 Oxidoreductase FAD-binding domain D8O08_003400 PF00175 Oxidoreductase NAD-binding domain D8O08_003400 PF00042 Globin D8O08_003405 PF05872 Bacterial protein of unknown function (DUF853) D8O08_003410 PF01053 Cys/Met metabolism PLP-dependent enzyme D8O08_003415 PF00117 Glutamine amidotransferase class-I D8O08_003420 PF00338 Ribosomal protein S10p/S20e D8O08_003425 PF00297 Ribosomal protein L3 D8O08_003430 PF00573 Ribosomal protein L4/L1 family D8O08_003435 PF00276 Ribosomal protein L23 D8O08_003440 PF00181 Ribosomal Proteins L2, RNA binding domain D8O08_003440 PF03947 Ribosomal Proteins L2, C-terminal domain D8O08_003445 PF00203 Ribosomal protein S19 D8O08_003450 PF00237 Ribosomal protein L22p/L17e D8O08_003455 PF07650 KH domain D8O08_003455 PF00189 Ribosomal protein S3, C-terminal domain D8O08_003460 PF00252 Ribosomal protein L16p/L10e D8O08_003465 PF00831 Ribosomal L29 protein D8O08_003470 PF00366 Ribosomal protein S17 D8O08_003475 PF00238 Ribosomal protein L14p/L23e D8O08_003480 PF00467 KOW motif D8O08_003480 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D8O08_003485 PF00673 ribosomal L5P family C-terminus D8O08_003485 PF00281 Ribosomal protein L5 D8O08_003490 PF00253 Ribosomal protein S14p/S29e D8O08_003495 PF00410 Ribosomal protein S8 D8O08_003500 PF00347 Ribosomal protein L6 D8O08_003505 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D8O08_003510 PF03719 Ribosomal protein S5, C-terminal domain D8O08_003510 PF00333 Ribosomal protein S5, N-terminal domain D8O08_003515 PF00327 Ribosomal protein L30p/L7e D8O08_003520 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D8O08_003525 PF00344 SecY translocase D8O08_003530 PF00444 Ribosomal protein L36 D8O08_003535 PF00416 Ribosomal protein S13/S18 D8O08_003540 PF00411 Ribosomal protein S11 D8O08_003545 PF00163 Ribosomal protein S4/S9 N-terminal domain D8O08_003545 PF01479 S4 domain D8O08_003550 PF01000 RNA polymerase Rpb3/RpoA insert domain D8O08_003550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D8O08_003550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D8O08_003555 PF01196 Ribosomal protein L17 D8O08_003560 PF00743 Flavin-binding monooxygenase-like D8O08_003565 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_003565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_003565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_003570 PF03937 Flavinator of succinate dehydrogenase D8O08_003600 PF09526 Probable metal-binding protein (DUF2387) D8O08_003605 PF01432 Peptidase family M3 D8O08_003610 PF00773 RNB domain D8O08_003610 PF08206 Ribonuclease B OB domain D8O08_003610 PF08461 Ribonuclease R winged-helix domain D8O08_003610 PF17876 Cold shock domain D8O08_003610 PF00575 S1 RNA binding domain D8O08_003655 PF01557 Fumarylacetoacetate (FAA) hydrolase family D8O08_003660 PF12833 Helix-turn-helix domain D8O08_003665 PF00892 EamA-like transporter family D8O08_003670 PF03631 Virulence factor BrkB D8O08_003675 PF03358 NADPH-dependent FMN reductase D8O08_003700 PF02130 Uncharacterized protein family UPF0054 D8O08_003705 PF02562 PhoH-like protein D8O08_003710 PF04055 Radical SAM superfamily D8O08_003710 PF01938 TRAM domain D8O08_003710 PF00919 Uncharacterized protein family UPF0004 D8O08_003715 PF10145 Phage-related minor tail protein D8O08_003715 PF01464 Transglycosylase SLT domain D8O08_003715 PF01551 Peptidase family M23 D8O08_003725 PF00056 lactate/malate dehydrogenase, NAD binding domain D8O08_003725 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D8O08_003745 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D8O08_003750 PF01066 CDP-alcohol phosphatidyltransferase D8O08_003795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_003795 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_003795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_003800 PF00440 Bacterial regulatory proteins, tetR family D8O08_003800 PF17932 Tetracyclin repressor-like, C-terminal domain D8O08_003815 PF01039 Carboxyl transferase domain D8O08_003820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_003820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_003820 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_003830 PF00364 Biotin-requiring enzyme D8O08_003830 PF02785 Biotin carboxylase C-terminal domain D8O08_003830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D8O08_003830 PF00289 Biotin carboxylase, N-terminal domain D8O08_003840 PF04386 Stringent starvation protein B D8O08_003845 PF13417 Glutathione S-transferase, N-terminal domain D8O08_003845 PF00043 Glutathione S-transferase, C-terminal domain D8O08_003850 PF00380 Ribosomal protein S9/S16 D8O08_003855 PF00572 Ribosomal protein L13 D8O08_003860 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D8O08_003865 PF00398 Ribosomal RNA adenine dimethylase D8O08_003870 PF00149 Calcineurin-like phosphoesterase D8O08_003890 PF16360 GTP-binding GTPase Middle Region D8O08_003890 PF13167 GTP-binding GTPase N-terminal D8O08_003890 PF01926 50S ribosome-binding GTPase D8O08_003900 PF13091 PLD-like domain D8O08_003905 PF10518 TAT (twin-arginine translocation) pathway signal sequence D8O08_003905 PF00149 Calcineurin-like phosphoesterase D8O08_003910 PF00691 OmpA family D8O08_003910 PF01389 OmpA-like transmembrane domain D8O08_003915 PF17152 Periplasmic sensor domain D8O08_003915 PF00990 Diguanylate cyclase, GGDEF domain D8O08_003950 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_003950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D8O08_003960 PF00753 Metallo-beta-lactamase superfamily D8O08_003960 PF04273 Putative phosphatase (DUF442) D8O08_003965 PF00561 alpha/beta hydrolase fold D8O08_003970 PF00085 Thioredoxin D8O08_003975 PF03061 Thioesterase superfamily D8O08_003985 PF04461 Protein of unknown function (DUF520) D8O08_003995 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D8O08_003995 PF01266 FAD dependent oxidoreductase D8O08_004005 PF03795 YCII-related domain D8O08_004010 PF04279 Intracellular septation protein A D8O08_004015 PF02811 PHP domain D8O08_004020 PF01062 Bestrophin, RFP-TM, chloride channel D8O08_004025 PF04002 RadC-like JAB domain D8O08_004030 PF04127 DNA / pantothenate metabolism flavoprotein D8O08_004030 PF02441 Flavoprotein D8O08_004035 PF02355 Protein export membrane protein D8O08_004035 PF07549 SecD/SecF GG Motif D8O08_004040 PF02355 Protein export membrane protein D8O08_004040 PF07549 SecD/SecF GG Motif D8O08_004040 PF13721 SecD export protein N-terminal TM region D8O08_004045 PF02699 Preprotein translocase subunit D8O08_004050 PF01702 Queuine tRNA-ribosyltransferase D8O08_004065 PF02547 Queuosine biosynthesis protein D8O08_004075 PF07689 KaiB domain D8O08_004075 PF00512 His Kinase A (phospho-acceptor) domain D8O08_004075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_004080 PF08335 GlnD PII-uridylyltransferase D8O08_004080 PF03710 Glutamate-ammonia ligase adenylyltransferase D8O08_004085 PF01063 Amino-transferase class IV D8O08_004100 PF01522 Polysaccharide deacetylase D8O08_004135 PF17101 Stealth protein CR1, conserved region 1 D8O08_004135 PF11380 Stealth protein CR2, conserved region 2 D8O08_004135 PF17102 Stealth protein CR3, conserved region 3 D8O08_004140 PF02938 GAD domain D8O08_004140 PF00152 tRNA synthetases class II (D, K and N) D8O08_004140 PF01336 OB-fold nucleic acid binding domain D8O08_004150 PF00593 TonB dependent receptor D8O08_004150 PF07715 TonB-dependent Receptor Plug Domain D8O08_004170 PF06146 Phosphate-starvation-inducible E D8O08_004175 PF02798 Glutathione S-transferase, N-terminal domain D8O08_004175 PF00043 Glutathione S-transferase, C-terminal domain D8O08_004185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_004185 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_004185 PF12806 Acetyl-CoA dehydrogenase C-terminal like D8O08_004185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_004190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_004190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_004190 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_004190 PF12806 Acetyl-CoA dehydrogenase C-terminal like D8O08_004200 PF00512 His Kinase A (phospho-acceptor) domain D8O08_004200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_004200 PF00672 HAMP domain D8O08_004205 PF00072 Response regulator receiver domain D8O08_004205 PF00486 Transcriptional regulatory protein, C terminal D8O08_004210 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D8O08_004230 PF01923 Cobalamin adenosyltransferase D8O08_004235 PF00593 TonB dependent receptor D8O08_004235 PF07715 TonB-dependent Receptor Plug Domain D8O08_004240 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D8O08_004245 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_004270 PF00290 Tryptophan synthase alpha chain D8O08_004275 PF01039 Carboxyl transferase domain D8O08_004280 PF02875 Mur ligase family, glutamate ligase domain D8O08_004280 PF08245 Mur ligase middle domain D8O08_004295 PF00753 Metallo-beta-lactamase superfamily D8O08_004300 PF10417 C-terminal domain of 1-Cys peroxiredoxin D8O08_004300 PF00578 AhpC/TSA family D8O08_004305 PF07516 SecA Wing and Scaffold domain D8O08_004305 PF07517 SecA DEAD-like domain D8O08_004305 PF01043 SecA preprotein cross-linking domain D8O08_004305 PF02810 SEC-C motif D8O08_004315 PF00083 Sugar (and other) transporter D8O08_004315 PF07690 Major Facilitator Superfamily D8O08_004320 PF03006 Haemolysin-III related D8O08_004345 PF00378 Enoyl-CoA hydratase/isomerase D8O08_004345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D8O08_004345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D8O08_004355 PF02311 AraC-like ligand binding domain D8O08_004355 PF12833 Helix-turn-helix domain D8O08_004360 PF02515 CoA-transferase family III D8O08_004370 PF01011 PQQ enzyme repeat D8O08_004375 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D8O08_004375 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D8O08_004385 PF00893 Small Multidrug Resistance protein D8O08_004395 PF02803 Thiolase, C-terminal domain D8O08_004395 PF00108 Thiolase, N-terminal domain D8O08_004405 PF13505 Outer membrane protein beta-barrel domain D8O08_004405 PF00691 OmpA family D8O08_004415 PF01139 tRNA-splicing ligase RtcB D8O08_004420 PF00324 Amino acid permease D8O08_004430 PF00860 Permease family D8O08_004440 PF01741 Large-conductance mechanosensitive channel, MscL D8O08_004455 PF06827 Zinc finger found in FPG and IleRS D8O08_004455 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D8O08_004455 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D8O08_004460 PF02245 Methylpurine-DNA glycosylase (MPG) D8O08_004465 PF00593 TonB dependent receptor D8O08_004465 PF07715 TonB-dependent Receptor Plug Domain D8O08_004480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D8O08_004495 PF13098 Thioredoxin-like domain D8O08_004495 PF10411 Disulfide bond isomerase protein N-terminus D8O08_004500 PF01571 Aminomethyltransferase folate-binding domain D8O08_004510 PF04343 Protein of unknown function, DUF488 D8O08_004515 PF08274 PhnA Zinc-Ribbon D8O08_004515 PF03831 PhnA domain D8O08_004520 PF07411 Domain of unknown function (DUF1508) D8O08_004525 PF04073 Aminoacyl-tRNA editing domain D8O08_004525 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D8O08_004525 PF03129 Anticodon binding domain D8O08_004530 PF00873 AcrB/AcrD/AcrF family D8O08_004545 PF00072 Response regulator receiver domain D8O08_004550 PF00072 Response regulator receiver domain D8O08_004560 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D8O08_004560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D8O08_004565 PF01584 CheW-like domain D8O08_004565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_004565 PF01627 Hpt domain D8O08_004565 PF00072 Response regulator receiver domain D8O08_004575 PF01546 Peptidase family M20/M25/M40 D8O08_004575 PF07687 Peptidase dimerisation domain D8O08_004580 PF08085 Entericidin EcnA/B family D8O08_004590 PF04304 Protein of unknown function (DUF454) D8O08_004595 PF17969 L,D-transpeptidase C-terminal domain D8O08_004595 PF03734 L,D-transpeptidase catalytic domain D8O08_004635 PF00175 Oxidoreductase NAD-binding domain D8O08_004635 PF00667 FAD binding domain D8O08_004635 PF00258 Flavodoxin D8O08_004645 PF12805 FUSC-like inner membrane protein yccS D8O08_004650 PF07690 Major Facilitator Superfamily D8O08_004655 PF00881 Nitroreductase family D8O08_004670 PF01235 Sodium:alanine symporter family D8O08_004675 PF01734 Patatin-like phospholipase D8O08_004680 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_004680 PF13291 ACT domain D8O08_004685 PF05992 SbmA/BacA-like family D8O08_004715 PF02934 GatB/GatE catalytic domain D8O08_004715 PF02637 GatB domain D8O08_004720 PF01425 Amidase D8O08_004725 PF02686 Glu-tRNAGln amidotransferase C subunit D8O08_004735 PF04085 rod shape-determining protein MreC D8O08_004740 PF04093 rod shape-determining protein MreD D8O08_004745 PF02545 Maf-like protein D8O08_004750 PF10150 Ribonuclease E/G family D8O08_004750 PF00575 S1 RNA binding domain D8O08_004760 PF06974 Protein of unknown function (DUF1298) D8O08_004760 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain D8O08_004765 PF01507 Phosphoadenosine phosphosulfate reductase family D8O08_004780 PF02525 Flavodoxin-like fold D8O08_004805 PF02673 Bacitracin resistance protein BacA D8O08_004810 PF12833 Helix-turn-helix domain D8O08_004810 PF06719 AraC-type transcriptional regulator N-terminus D8O08_004815 PF16197 Ketoacyl-synthetase C-terminal extension D8O08_004815 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_004815 PF09277 Erythronolide synthase, docking D8O08_004815 PF08990 Erythronolide synthase docking D8O08_004815 PF02801 Beta-ketoacyl synthase, C-terminal domain D8O08_004815 PF08659 KR domain D8O08_004815 PF00550 Phosphopantetheine attachment site D8O08_004815 PF14765 Polyketide synthase dehydratase D8O08_004815 PF00109 Beta-ketoacyl synthase, N-terminal domain D8O08_004815 PF00698 Acyl transferase domain D8O08_004820 PF01965 DJ-1/PfpI family D8O08_004830 PF00324 Amino acid permease D8O08_004835 PF04303 PrpF protein D8O08_004840 PF00348 Polyprenyl synthetase D8O08_004845 PF04237 YjbR D8O08_004850 PF01145 SPFH domain / Band 7 family D8O08_004860 PF01734 Patatin-like phospholipase D8O08_004880 PF00884 Sulfatase D8O08_004880 PF08019 Phosphoethanolamine transferase EptA/EptB D8O08_004885 PF00072 Response regulator receiver domain D8O08_004885 PF00486 Transcriptional regulatory protein, C terminal D8O08_004890 PF08521 Two-component sensor kinase N-terminal D8O08_004890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_004890 PF00512 His Kinase A (phospho-acceptor) domain D8O08_004900 PF00909 Ammonium Transporter Family D8O08_004910 PF03466 LysR substrate binding domain D8O08_004910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_004930 PF08264 Anticodon-binding domain of tRNA D8O08_004930 PF00133 tRNA synthetases class I (I, L, M and V) D8O08_004930 PF10458 Valyl tRNA synthetase tRNA binding arm D8O08_004950 PF01906 Putative heavy-metal-binding D8O08_004955 PF01906 Putative heavy-metal-binding D8O08_004960 PF02321 Outer membrane efflux protein D8O08_004965 PF00873 AcrB/AcrD/AcrF family D8O08_004970 PF00529 HlyD membrane-fusion protein of T1SS D8O08_004970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D8O08_004975 PF01569 PAP2 superfamily D8O08_004985 PF00348 Polyprenyl synthetase D8O08_004995 PF00829 Ribosomal prokaryotic L21 protein D8O08_005000 PF01016 Ribosomal L27 protein D8O08_005005 PF03548 Outer membrane lipoprotein carrier protein LolA D8O08_005015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D8O08_005015 PF02403 Seryl-tRNA synthetase N-terminal domain D8O08_005020 PF10414 Sirohaem synthase dimerisation region D8O08_005020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D8O08_005020 PF14824 Sirohaem biosynthesis protein central D8O08_005025 PF00588 SpoU rRNA Methylase family D8O08_005030 PF01638 HxlR-like helix-turn-helix D8O08_005035 PF03358 NADPH-dependent FMN reductase D8O08_005040 PF13520 Amino acid permease D8O08_005045 PF00465 Iron-containing alcohol dehydrogenase D8O08_005055 PF03099 Biotin/lipoate A/B protein ligase family D8O08_005060 PF04359 Protein of unknown function (DUF493) D8O08_005065 PF04539 Sigma-70 region 3 D8O08_005065 PF04546 Sigma-70, non-essential region D8O08_005065 PF00140 Sigma-70 factor, region 1.2 D8O08_005065 PF03979 Sigma-70 factor, region 1.1 D8O08_005065 PF04545 Sigma-70, region 4 D8O08_005065 PF04542 Sigma-70 region 2 D8O08_005095 PF00285 Citrate synthase, C-terminal domain D8O08_005100 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D8O08_005105 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D8O08_005110 PF02910 Fumarate reductase flavoprotein C-term D8O08_005110 PF00890 FAD binding domain D8O08_005115 PF13085 2Fe-2S iron-sulfur cluster binding domain D8O08_005130 PF00676 Dehydrogenase E1 component D8O08_005130 PF16078 2-oxoglutarate dehydrogenase N-terminus D8O08_005130 PF02779 Transketolase, pyrimidine binding domain D8O08_005130 PF16870 2-oxoglutarate dehydrogenase C-terminal D8O08_005135 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D8O08_005135 PF02817 e3 binding domain D8O08_005135 PF00364 Biotin-requiring enzyme D8O08_005140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D8O08_005140 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_005145 PF00549 CoA-ligase D8O08_005145 PF08442 ATP-grasp domain D8O08_005150 PF00549 CoA-ligase D8O08_005150 PF02629 CoA binding domain D8O08_005155 PF00579 tRNA synthetases class I (W and Y) D8O08_005160 PF05661 Protein of unknown function (DUF808) D8O08_005165 PF04228 Putative neutral zinc metallopeptidase D8O08_005240 PF09587 Bacterial capsule synthesis protein PGA_cap D8O08_005250 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D8O08_005255 PF00582 Universal stress protein family D8O08_005260 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_005265 PF01272 Transcription elongation factor, GreA/GreB, C-term D8O08_005265 PF03449 Transcription elongation factor, N-terminal D8O08_005270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D8O08_005270 PF02142 MGS-like domain D8O08_005270 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D8O08_005275 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D8O08_005275 PF00117 Glutamine amidotransferase class-I D8O08_005290 PF01985 CRS1 / YhbY (CRM) domain D8O08_005295 PF01728 FtsJ-like methyltransferase D8O08_005300 PF17862 AAA+ lid domain D8O08_005300 PF00004 ATPase family associated with various cellular activities (AAA) D8O08_005300 PF01434 Peptidase family M41 D8O08_005300 PF06480 FtsH Extracellular D8O08_005305 PF00809 Pterin binding enzyme D8O08_005325 PF09423 PhoD-like phosphatase D8O08_005325 PF16655 PhoD-like phosphatase, N-terminal domain D8O08_005340 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D8O08_005340 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D8O08_005355 PF00083 Sugar (and other) transporter D8O08_005360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D8O08_005360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D8O08_005365 PF01266 FAD dependent oxidoreductase D8O08_005365 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D8O08_005370 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain D8O08_005370 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain D8O08_005375 PF00781 Diacylglycerol kinase catalytic domain D8O08_005380 PF00149 Calcineurin-like phosphoesterase D8O08_005390 PF00166 Chaperonin 10 Kd subunit D8O08_005395 PF00118 TCP-1/cpn60 chaperonin family D8O08_005400 PF01219 Prokaryotic diacylglycerol kinase D8O08_005410 PF03009 Glycerophosphoryl diester phosphodiesterase family D8O08_005415 PF00873 AcrB/AcrD/AcrF family D8O08_005425 PF01435 Peptidase family M48 D8O08_005430 PF01464 Transglycosylase SLT domain D8O08_005440 PF01171 PP-loop family D8O08_005450 PF00497 Bacterial extracellular solute-binding proteins, family 3 D8O08_005450 PF01464 Transglycosylase SLT domain D8O08_005455 PF01272 Transcription elongation factor, GreA/GreB, C-term D8O08_005455 PF03449 Transcription elongation factor, N-terminal D8O08_005470 PF00550 Phosphopantetheine attachment site D8O08_005470 PF00501 AMP-binding enzyme D8O08_005470 PF13193 AMP-binding enzyme C-terminal domain D8O08_005470 PF00975 Thioesterase domain D8O08_005470 PF00668 Condensation domain D8O08_005500 PF00881 Nitroreductase family D8O08_005515 PF02595 Glycerate kinase family D8O08_005520 PF00384 Molybdopterin oxidoreductase D8O08_005525 PF02634 FdhD/NarQ family D8O08_005530 PF06803 Protein of unknown function (DUF1232) D8O08_005535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D8O08_005535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D8O08_005535 PF11890 Domain of unknown function (DUF3410) D8O08_005540 PF00152 tRNA synthetases class II (D, K and N) D8O08_005550 PF18073 Rubredoxin metal binding domain D8O08_005555 PF00324 Amino acid permease D8O08_005565 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D8O08_005565 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D8O08_005570 PF01678 Diaminopimelate epimerase D8O08_005575 PF01810 LysE type translocator D8O08_005580 PF00589 Phage integrase family D8O08_005580 PF02899 Phage integrase, N-terminal SAM-like domain D8O08_005585 PF01012 Electron transfer flavoprotein domain D8O08_005590 PF01012 Electron transfer flavoprotein domain D8O08_005590 PF00766 Electron transfer flavoprotein FAD-binding domain D8O08_005595 PF03989 DNA gyrase C-terminal domain, beta-propeller D8O08_005595 PF00521 DNA gyrase/topoisomerase IV, subunit A D8O08_005610 PF00535 Glycosyl transferase family 2 D8O08_005630 PF13533 Biotin-lipoyl like D8O08_005640 PF00266 Aminotransferase class-V D8O08_005650 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D8O08_005660 PF12704 MacB-like periplasmic core domain D8O08_005660 PF02687 FtsX-like permease family D8O08_005665 PF00005 ABC transporter D8O08_005680 PF06965 Na+/H+ antiporter 1 D8O08_005680 PF01343 Peptidase family S49 D8O08_005685 PF12697 Alpha/beta hydrolase family D8O08_005690 PF00551 Formyl transferase D8O08_005695 PF02769 AIR synthase related protein, C-terminal domain D8O08_005695 PF00586 AIR synthase related protein, N-terminal domain D8O08_005700 PF01594 AI-2E family transporter D8O08_005705 PF08299 Bacterial dnaA protein helix-turn-helix D8O08_005705 PF11638 DnaA N-terminal domain D8O08_005705 PF00308 Bacterial dnaA protein D8O08_005735 PF08032 RNA 2'-O ribose methyltransferase substrate binding D8O08_005735 PF00588 SpoU rRNA Methylase family D8O08_005740 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D8O08_005750 PF00691 OmpA family D8O08_005755 PF04052 TolB amino-terminal domain D8O08_005755 PF07676 WD40-like Beta Propeller Repeat D8O08_005765 PF02472 Biopolymer transport protein ExbD/TolR D8O08_005770 PF01618 MotA/TolQ/ExbB proton channel family D8O08_005775 PF03061 Thioesterase superfamily D8O08_005780 PF07687 Peptidase dimerisation domain D8O08_005780 PF01546 Peptidase family M20/M25/M40 D8O08_005785 PF17864 RuvB AAA lid domain D8O08_005785 PF05491 RuvB C-terminal winged helix domain D8O08_005785 PF05496 Holliday junction DNA helicase RuvB P-loop domain D8O08_005790 PF01330 RuvA N terminal domain D8O08_005790 PF07499 RuvA, C-terminal domain D8O08_005795 PF01966 HD domain D8O08_005800 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D8O08_005800 PF02769 AIR synthase related protein, C-terminal domain D8O08_005800 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D8O08_005805 PF07690 Major Facilitator Superfamily D8O08_005810 PF01784 NIF3 (NGG1p interacting factor 3) D8O08_005815 PF00378 Enoyl-CoA hydratase/isomerase D8O08_005820 PF01467 Cytidylyltransferase-like D8O08_005820 PF00293 NUDIX domain D8O08_005830 PF00578 AhpC/TSA family D8O08_005845 PF06508 Queuosine biosynthesis protein QueC D8O08_005855 PF14602 Hexapeptide repeat of succinyl-transferase D8O08_005855 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_005855 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D8O08_005865 PF03466 LysR substrate binding domain D8O08_005865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_005870 PF12857 TOBE-like domain D8O08_005870 PF00005 ABC transporter D8O08_005875 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_005880 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_005895 PF01063 Amino-transferase class IV D8O08_005900 PF02618 YceG-like family D8O08_005905 PF02223 Thymidylate kinase D8O08_005915 PF00890 FAD binding domain D8O08_005915 PF02910 Fumarate reductase flavoprotein C-term D8O08_005920 PF13180 PDZ domain D8O08_005930 PF06421 GTP-binding protein LepA C-terminus D8O08_005930 PF03144 Elongation factor Tu domain 2 D8O08_005930 PF00009 Elongation factor Tu GTP binding domain D8O08_005930 PF00679 Elongation factor G C-terminus D8O08_005935 PF10502 Signal peptidase, peptidase S26 D8O08_005945 PF00035 Double-stranded RNA binding motif D8O08_005945 PF14622 Ribonuclease-III-like D8O08_005950 PF01926 50S ribosome-binding GTPase D8O08_005950 PF07650 KH domain D8O08_005960 PF02565 Recombination protein O C terminal D8O08_005960 PF11967 Recombination protein O N terminal D8O08_005965 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D8O08_005970 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) D8O08_005975 PF00106 short chain dehydrogenase D8O08_006025 PF04851 Type III restriction enzyme, res subunit D8O08_006025 PF02151 UvrB/uvrC motif D8O08_006025 PF17757 UvrB interaction domain D8O08_006025 PF00271 Helicase conserved C-terminal domain D8O08_006025 PF12344 Ultra-violet resistance protein B D8O08_006035 PF00892 EamA-like transporter family D8O08_006040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D8O08_006040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D8O08_006055 PF01018 GTP1/OBG D8O08_006055 PF01926 50S ribosome-binding GTPase D8O08_006060 PF01472 PUA domain D8O08_006060 PF00696 Amino acid kinase family D8O08_006070 PF07759 Protein of unknown function (DUF1615) D8O08_006075 PF01207 Dihydrouridine synthase (Dus) D8O08_006095 PF02350 UDP-N-acetylglucosamine 2-epimerase D8O08_006125 PF03441 FAD binding domain of DNA photolyase D8O08_006125 PF00875 DNA photolyase D8O08_006130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D8O08_006135 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_006140 PF07943 Penicillin-binding protein 5, C-terminal domain D8O08_006140 PF00768 D-alanyl-D-alanine carboxypeptidase D8O08_006150 PF03971 Monomeric isocitrate dehydrogenase D8O08_006160 PF00180 Isocitrate/isopropylmalate dehydrogenase D8O08_006175 PF06779 Uncharacterised MFS-type transporter YbfB D8O08_006180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_006180 PF03466 LysR substrate binding domain D8O08_006190 PF02567 Phenazine biosynthesis-like protein D8O08_006195 PF05193 Peptidase M16 inactive domain D8O08_006195 PF00675 Insulinase (Peptidase family M16) D8O08_006225 PF00202 Aminotransferase class-III D8O08_006235 PF00849 RNA pseudouridylate synthase D8O08_006240 PF18337 RapA N-terminal Tudor like domain D8O08_006240 PF18339 RapA N-terminal Tudor like domain 1 D8O08_006240 PF00176 SNF2 family N-terminal domain D8O08_006240 PF12137 RNA polymerase recycling family C-terminal D8O08_006240 PF00271 Helicase conserved C-terminal domain D8O08_006250 PF00440 Bacterial regulatory proteins, tetR family D8O08_006260 PF00487 Fatty acid desaturase D8O08_006270 PF17754 MftR C-terminal domain D8O08_006270 PF00440 Bacterial regulatory proteins, tetR family D8O08_006280 PF00202 Aminotransferase class-III D8O08_006285 PF00282 Pyridoxal-dependent decarboxylase conserved domain D8O08_006290 PF00171 Aldehyde dehydrogenase family D8O08_006295 PF01037 Lrp/AsnC ligand binding domain D8O08_006300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D8O08_006300 PF00205 Thiamine pyrophosphate enzyme, central domain D8O08_006300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D8O08_006305 PF00324 Amino acid permease D8O08_006310 PF12849 PBP superfamily domain D8O08_006315 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_006320 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_006325 PF00005 ABC transporter D8O08_006330 PF01343 Peptidase family S49 D8O08_006330 PF08496 Peptidase family S49 N-terminal D8O08_006345 PF08328 Adenylosuccinate lyase C-terminal D8O08_006345 PF00206 Lyase D8O08_006350 PF04356 Protein of unknown function (DUF489) D8O08_006360 PF00293 NUDIX domain D8O08_006360 PF13344 Haloacid dehalogenase-like hydrolase D8O08_006365 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_006370 PF00768 D-alanyl-D-alanine carboxypeptidase D8O08_006370 PF07943 Penicillin-binding protein 5, C-terminal domain D8O08_006385 PF01975 Survival protein SurE D8O08_006390 PF01476 LysM domain D8O08_006390 PF01551 Peptidase family M23 D8O08_006395 PF03466 LysR substrate binding domain D8O08_006395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_006400 PF13654 AAA domain D8O08_006400 PF05362 Lon protease (S16) C-terminal proteolytic domain D8O08_006405 PF07690 Major Facilitator Superfamily D8O08_006410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D8O08_006415 PF13593 SBF-like CPA transporter family (DUF4137) D8O08_006420 PF01197 Ribosomal protein L31 D8O08_006435 PF04055 Radical SAM superfamily D8O08_006440 PF09285 Elongation factor P, C-terminal D8O08_006440 PF08207 Elongation factor P (EF-P) KOW-like domain D8O08_006440 PF01132 Elongation factor P (EF-P) OB domain D8O08_006445 PF02554 Carbon starvation protein CstA D8O08_006445 PF13722 5TM C-terminal transporter carbon starvation CstA D8O08_006450 PF04328 Selenoprotein, putative D8O08_006485 PF13556 PucR C-terminal helix-turn-helix domain D8O08_006485 PF17853 GGDEF-like domain D8O08_006485 PF06018 CodY GAF-like domain D8O08_006500 PF00171 Aldehyde dehydrogenase family D8O08_006505 PF00324 Amino acid permease D8O08_006510 PF03466 LysR substrate binding domain D8O08_006510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_006520 PF02028 BCCT, betaine/carnitine/choline family transporter D8O08_006525 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D8O08_006525 PF00355 Rieske [2Fe-2S] domain D8O08_006535 PF18113 Rubredoxin binding C-terminal domain D8O08_006535 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_006540 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D8O08_006540 PF01266 FAD dependent oxidoreductase D8O08_006570 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D8O08_006575 PF00083 Sugar (and other) transporter D8O08_006580 PF13378 Enolase C-terminal domain-like D8O08_006580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D8O08_006585 PF00550 Phosphopantetheine attachment site D8O08_006585 PF14765 Polyketide synthase dehydratase D8O08_006585 PF02801 Beta-ketoacyl synthase, C-terminal domain D8O08_006585 PF08990 Erythronolide synthase docking D8O08_006585 PF00698 Acyl transferase domain D8O08_006585 PF08659 KR domain D8O08_006585 PF16197 Ketoacyl-synthetase C-terminal extension D8O08_006585 PF09277 Erythronolide synthase, docking D8O08_006585 PF00109 Beta-ketoacyl synthase, N-terminal domain D8O08_006585 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_006590 PF00440 Bacterial regulatory proteins, tetR family D8O08_006610 PF02678 Pirin D8O08_006610 PF17954 Quercetinase C-terminal cupin domain D8O08_006620 PF13309 HTH domain D8O08_006620 PF08348 YheO-like PAS domain D8O08_006630 PF00501 AMP-binding enzyme D8O08_006630 PF13193 AMP-binding enzyme C-terminal domain D8O08_006630 PF00668 Condensation domain D8O08_006630 PF00550 Phosphopantetheine attachment site D8O08_006635 PF00501 AMP-binding enzyme D8O08_006635 PF13193 AMP-binding enzyme C-terminal domain D8O08_006635 PF00668 Condensation domain D8O08_006635 PF00550 Phosphopantetheine attachment site D8O08_006635 PF00975 Thioesterase domain D8O08_006640 PF01032 FecCD transport family D8O08_006645 PF01032 FecCD transport family D8O08_006650 PF00005 ABC transporter D8O08_006655 PF01497 Periplasmic binding protein D8O08_006660 PF07715 TonB-dependent Receptor Plug Domain D8O08_006660 PF00593 TonB dependent receptor D8O08_006665 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) D8O08_006670 PF00668 Condensation domain D8O08_006670 PF00550 Phosphopantetheine attachment site D8O08_006670 PF00501 AMP-binding enzyme D8O08_006675 PF00501 AMP-binding enzyme D8O08_006675 PF13193 AMP-binding enzyme C-terminal domain D8O08_006680 PF00550 Phosphopantetheine attachment site D8O08_006680 PF00857 Isochorismatase family D8O08_006685 PF00282 Pyridoxal-dependent decarboxylase conserved domain D8O08_006695 PF00005 ABC transporter D8O08_006695 PF00664 ABC transporter transmembrane region D8O08_006700 PF00664 ABC transporter transmembrane region D8O08_006700 PF00005 ABC transporter D8O08_006705 PF00975 Thioesterase domain D8O08_006715 PF00425 chorismate binding enzyme D8O08_006725 PF01208 Uroporphyrinogen decarboxylase (URO-D) D8O08_006730 PF05675 Protein of unknown function (DUF817) D8O08_006745 PF00144 Beta-lactamase D8O08_006760 PF00111 2Fe-2S iron-sulfur cluster binding domain D8O08_006760 PF01799 [2Fe-2S] binding domain D8O08_006765 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D8O08_006765 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D8O08_006785 PF02885 Glycosyl transferase family, helical bundle domain D8O08_006785 PF00591 Glycosyl transferase family, a/b domain D8O08_006790 PF07715 TonB-dependent Receptor Plug Domain D8O08_006790 PF00593 TonB dependent receptor D8O08_006800 PF00117 Glutamine amidotransferase class-I D8O08_006845 PF12161 HsdM N-terminal domain D8O08_006845 PF02384 N-6 DNA Methylase D8O08_006875 PF01555 DNA methylase D8O08_007045 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D8O08_007075 PF08525 Opacity-associated protein A N-terminal motif D8O08_007075 PF01476 LysM domain D8O08_007075 PF01551 Peptidase family M23 D8O08_007125 PF00589 Phage integrase family D8O08_007125 PF13356 Arm DNA-binding domain D8O08_007135 PF00854 POT family D8O08_007145 PF04345 Chorismate lyase D8O08_007150 PF01040 UbiA prenyltransferase family D8O08_007185 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D8O08_007185 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D8O08_007190 PF01784 NIF3 (NGG1p interacting factor 3) D8O08_007195 PF13180 PDZ domain D8O08_007200 PF12627 Probable RNA and SrmB- binding site of polymerase A D8O08_007200 PF01743 Poly A polymerase head domain D8O08_007205 PF01515 Phosphate acetyl/butaryl transferase D8O08_007205 PF03949 Malic enzyme, NAD binding domain D8O08_007205 PF00390 Malic enzyme, N-terminal domain D8O08_007220 PF02219 Methylenetetrahydrofolate reductase D8O08_007225 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D8O08_007225 PF05221 S-adenosyl-L-homocysteine hydrolase D8O08_007240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_007240 PF09317 Domain of unknown function (DUF1974) D8O08_007240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_007245 PF04055 Radical SAM superfamily D8O08_007250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D8O08_007250 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_007260 PF07690 Major Facilitator Superfamily D8O08_007270 PF00557 Metallopeptidase family M24 D8O08_007275 PF00318 Ribosomal protein S2 D8O08_007280 PF00889 Elongation factor TS D8O08_007290 PF12833 Helix-turn-helix domain D8O08_007315 PF05036 Sporulation related domain D8O08_007315 PF03330 Lytic transglycolase D8O08_007320 PF13406 Transglycosylase SLT domain D8O08_007325 PF01098 Cell cycle protein D8O08_007335 PF14489 QueF-like protein D8O08_007335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D8O08_007340 PF01061 ABC-2 type transporter D8O08_007345 PF00005 ABC transporter D8O08_007375 PF00464 Serine hydroxymethyltransferase D8O08_007380 PF02321 Outer membrane efflux protein D8O08_007385 PF00873 AcrB/AcrD/AcrF family D8O08_007390 PF13533 Biotin-lipoyl like D8O08_007395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_007395 PF03466 LysR substrate binding domain D8O08_007400 PF00497 Bacterial extracellular solute-binding proteins, family 3 D8O08_007405 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_007410 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_007415 PF00005 ABC transporter D8O08_007420 PF00893 Small Multidrug Resistance protein D8O08_007425 PF00037 4Fe-4S binding domain D8O08_007440 PF02567 Phenazine biosynthesis-like protein D8O08_007445 PF00970 Oxidoreductase FAD-binding domain D8O08_007445 PF00175 Oxidoreductase NAD-binding domain D8O08_007450 PF01980 tRNA-methyltransferase O D8O08_007450 PF18389 TrmO C-terminal domain D8O08_007460 PF00437 Type II/IV secretion system protein D8O08_007470 PF00072 Response regulator receiver domain D8O08_007470 PF00486 Transcriptional regulatory protein, C terminal D8O08_007475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_007475 PF08521 Two-component sensor kinase N-terminal D8O08_007475 PF00512 His Kinase A (phospho-acceptor) domain D8O08_007485 PF00293 NUDIX domain D8O08_007495 PF00912 Transglycosylase D8O08_007495 PF14814 Bifunctional transglycosylase second domain D8O08_007495 PF00905 Penicillin binding protein transpeptidase domain D8O08_007500 PF01513 ATP-NAD kinase D8O08_007505 PF07023 Protein of unknown function (DUF1315) D8O08_007510 PF00591 Glycosyl transferase family, a/b domain D8O08_007510 PF02885 Glycosyl transferase family, helical bundle domain D8O08_007520 PF00375 Sodium:dicarboxylate symporter family D8O08_007525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_007525 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_007525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_007530 PF00756 Putative esterase D8O08_007535 PF01842 ACT domain D8O08_007535 PF01817 Chorismate mutase type II D8O08_007535 PF00800 Prephenate dehydratase D8O08_007540 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D8O08_007550 PF01546 Peptidase family M20/M25/M40 D8O08_007550 PF07687 Peptidase dimerisation domain D8O08_007555 PF12706 Beta-lactamase superfamily domain D8O08_007565 PF03883 Peroxide stress protein YaaA D8O08_007575 PF05690 Thiazole biosynthesis protein ThiG D8O08_007585 PF04241 Protein of unknown function (DUF423) D8O08_007590 PF04545 Sigma-70, region 4 D8O08_007590 PF00140 Sigma-70 factor, region 1.2 D8O08_007590 PF04542 Sigma-70 region 2 D8O08_007600 PF00313 'Cold-shock' DNA-binding domain D8O08_007605 PF00270 DEAD/DEAH box helicase D8O08_007605 PF00271 Helicase conserved C-terminal domain D8O08_007615 PF00881 Nitroreductase family D8O08_007620 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D8O08_007620 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D8O08_007645 PF02674 Colicin V production protein D8O08_007650 PF00156 Phosphoribosyl transferase domain D8O08_007665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D8O08_007665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D8O08_007670 PF01435 Peptidase family M48 D8O08_007675 PF09424 Yqey-like protein D8O08_007680 PF01165 Ribosomal protein S21 D8O08_007685 PF00814 Glycoprotease family D8O08_007705 PF00069 Protein kinase domain D8O08_007735 PF00202 Aminotransferase class-III D8O08_007740 PF00171 Aldehyde dehydrogenase family D8O08_007775 PF04076 Bacterial OB fold (BOF) protein D8O08_007800 PF00561 alpha/beta hydrolase fold D8O08_007805 PF03616 Sodium/glutamate symporter D8O08_007815 PF07729 FCD domain D8O08_007815 PF00392 Bacterial regulatory proteins, gntR family D8O08_007865 PF00083 Sugar (and other) transporter D8O08_007865 PF08946 Osmosensory transporter coiled coil D8O08_007890 PF00155 Aminotransferase class I and II D8O08_007895 PF02080 TrkA-C domain D8O08_007895 PF06826 Predicted Permease Membrane Region D8O08_007905 PF04403 Paraquat-inducible protein A D8O08_007910 PF02470 MlaD protein D8O08_007925 PF00892 EamA-like transporter family D8O08_008005 PF00324 Amino acid permease D8O08_008010 PF01266 FAD dependent oxidoreductase D8O08_008015 PF00324 Amino acid permease D8O08_008025 PF07729 FCD domain D8O08_008025 PF00392 Bacterial regulatory proteins, gntR family D8O08_008035 PF00171 Aldehyde dehydrogenase family D8O08_008045 PF00202 Aminotransferase class-III D8O08_008050 PF04958 Arginine N-succinyltransferase beta subunit D8O08_008055 PF00324 Amino acid permease D8O08_008060 PF13610 DDE domain D8O08_008065 PF00106 short chain dehydrogenase D8O08_008075 PF17932 Tetracyclin repressor-like, C-terminal domain D8O08_008075 PF00440 Bacterial regulatory proteins, tetR family D8O08_008080 PF17954 Quercetinase C-terminal cupin domain D8O08_008080 PF02678 Pirin D8O08_008090 PF00106 short chain dehydrogenase D8O08_008095 PF00743 Flavin-binding monooxygenase-like D8O08_008105 PF00860 Permease family D8O08_008110 PF00962 Adenosine/AMP deaminase D8O08_008115 PF01292 Prokaryotic cytochrome b561 D8O08_008125 PF01351 Ribonuclease HII D8O08_008130 PF02599 Global regulator protein family D8O08_008135 PF00696 Amino acid kinase family D8O08_008135 PF01842 ACT domain D8O08_008135 PF13840 ACT domain D8O08_008140 PF02272 DHHA1 domain D8O08_008140 PF01411 tRNA synthetases class II (A) D8O08_008140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D8O08_008145 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D8O08_008145 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D8O08_008150 PF13393 Histidyl-tRNA synthetase D8O08_008155 PF00709 Adenylosuccinate synthetase D8O08_008170 PF00248 Aldo/keto reductase family D8O08_008180 PF13545 Crp-like helix-turn-helix domain D8O08_008180 PF00027 Cyclic nucleotide-binding domain D8O08_008185 PF02566 OsmC-like protein D8O08_008200 PF10431 C-terminal, D2-small domain, of ClpB protein D8O08_008200 PF02861 Clp amino terminal domain, pathogenicity island component D8O08_008200 PF17871 AAA lid domain D8O08_008200 PF07724 AAA domain (Cdc48 subfamily) D8O08_008200 PF00004 ATPase family associated with various cellular activities (AAA) D8O08_008215 PF10672 S-adenosylmethionine-dependent methyltransferase D8O08_008215 PF02926 THUMP domain D8O08_008215 PF01170 Putative RNA methylase family UPF0020 D8O08_008225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D8O08_008225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D8O08_008230 PF01979 Amidohydrolase family D8O08_008235 PF00691 OmpA family D8O08_008235 PF13488 Glycine zipper D8O08_008245 PF13417 Glutathione S-transferase, N-terminal domain D8O08_008245 PF00043 Glutathione S-transferase, C-terminal domain D8O08_008250 PF02390 Putative methyltransferase D8O08_008260 PF00043 Glutathione S-transferase, C-terminal domain D8O08_008260 PF02798 Glutathione S-transferase, N-terminal domain D8O08_008270 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_008270 PF13192 Thioredoxin domain D8O08_008295 PF10417 C-terminal domain of 1-Cys peroxiredoxin D8O08_008295 PF00578 AhpC/TSA family D8O08_008300 PF00271 Helicase conserved C-terminal domain D8O08_008300 PF04408 Helicase associated domain (HA2) D8O08_008300 PF11898 Domain of unknown function (DUF3418) D8O08_008300 PF00270 DEAD/DEAH box helicase D8O08_008300 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D8O08_008305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D8O08_008305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D8O08_008315 PF07690 Major Facilitator Superfamily D8O08_008320 PF03594 Benzoate membrane transport protein D8O08_008325 PF00106 short chain dehydrogenase D8O08_008330 PF00175 Oxidoreductase NAD-binding domain D8O08_008330 PF00111 2Fe-2S iron-sulfur cluster binding domain D8O08_008330 PF00970 Oxidoreductase FAD-binding domain D8O08_008335 PF00866 Ring hydroxylating beta subunit D8O08_008340 PF00355 Rieske [2Fe-2S] domain D8O08_008340 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D8O08_008345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_008345 PF03466 LysR substrate binding domain D8O08_008355 PF00403 Heavy-metal-associated domain D8O08_008360 PF09278 MerR, DNA binding D8O08_008360 PF00376 MerR family regulatory protein D8O08_008400 PF13742 OB-fold nucleic acid binding domain D8O08_008400 PF02601 Exonuclease VII, large subunit D8O08_008435 PF01810 LysE type translocator D8O08_008440 PF00313 'Cold-shock' DNA-binding domain D8O08_008450 PF14748 Pyrroline-5-carboxylate reductase dimerisation D8O08_008450 PF03807 NADP oxidoreductase coenzyme F420-dependent D8O08_008480 PF07690 Major Facilitator Superfamily D8O08_008485 PF01638 HxlR-like helix-turn-helix D8O08_008515 PF09190 DALR domain D8O08_008515 PF01406 tRNA synthetases class I (C) catalytic domain D8O08_008520 PF00571 CBS domain D8O08_008520 PF01380 SIS domain D8O08_008535 PF03968 OstA-like protein D8O08_008540 PF00005 ABC transporter D8O08_008540 PF12399 Branched-chain amino acid ATP-binding cassette transporter D8O08_008545 PF02321 Outer membrane efflux protein D8O08_008550 PF00005 ABC transporter D8O08_008550 PF03412 Peptidase C39 family D8O08_008550 PF00664 ABC transporter transmembrane region D8O08_008565 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_008575 PF01596 O-methyltransferase D8O08_008585 PF11953 Domain of unknown function (DUF3470) D8O08_008585 PF00037 4Fe-4S binding domain D8O08_008600 PF01037 Lrp/AsnC ligand binding domain D8O08_008605 PF00892 EamA-like transporter family D8O08_008610 PF00990 Diguanylate cyclase, GGDEF domain D8O08_008610 PF03707 Bacterial signalling protein N terminal repeat D8O08_008610 PF00563 EAL domain D8O08_008615 PF03279 Bacterial lipid A biosynthesis acyltransferase D8O08_008650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D8O08_008650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D8O08_008670 PF13419 Haloacid dehalogenase-like hydrolase D8O08_008685 PF04717 Type VI secretion system, phage-baseplate injector D8O08_008685 PF16671 Actin cross-linking domain D8O08_008690 PF14220 Domain of unknown function (DUF4329) D8O08_008690 PF03527 RHS protein D8O08_008690 PF05593 RHS Repeat D8O08_008705 PF03466 LysR substrate binding domain D8O08_008705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_008710 PF01566 Natural resistance-associated macrophage protein D8O08_008715 PF03746 LamB/YcsF family D8O08_008720 PF07286 Protein of unknown function (DUF1445) D8O08_008730 PF02785 Biotin carboxylase C-terminal domain D8O08_008730 PF00289 Biotin carboxylase, N-terminal domain D8O08_008730 PF00364 Biotin-requiring enzyme D8O08_008730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D8O08_008735 PF00654 Voltage gated chloride channel D8O08_008760 PF00440 Bacterial regulatory proteins, tetR family D8O08_008770 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_008770 PF13823 Alcohol dehydrogenase GroES-associated D8O08_008770 PF00107 Zinc-binding dehydrogenase D8O08_008790 PF02525 Flavodoxin-like fold D8O08_008810 PF01402 Ribbon-helix-helix protein, copG family D8O08_008810 PF08753 NikR C terminal nickel binding domain D8O08_008815 PF01425 Amidase D8O08_008820 PF00497 Bacterial extracellular solute-binding proteins, family 3 D8O08_008825 PF00005 ABC transporter D8O08_008895 PF01389 OmpA-like transmembrane domain D8O08_008895 PF00691 OmpA family D8O08_008905 PF17871 AAA lid domain D8O08_008905 PF07724 AAA domain (Cdc48 subfamily) D8O08_008905 PF10431 C-terminal, D2-small domain, of ClpB protein D8O08_008905 PF00004 ATPase family associated with various cellular activities (AAA) D8O08_008935 PF03466 LysR substrate binding domain D8O08_008935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_008945 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D8O08_008950 PF07690 Major Facilitator Superfamily D8O08_008965 PF02677 Epoxyqueuosine reductase QueH D8O08_008980 PF00376 MerR family regulatory protein D8O08_008980 PF09278 MerR, DNA binding D8O08_008995 PF00701 Dihydrodipicolinate synthetase family D8O08_009005 PF00392 Bacterial regulatory proteins, gntR family D8O08_009010 PF05544 Proline racemase D8O08_009015 PF01266 FAD dependent oxidoreductase D8O08_009025 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_009025 PF04324 BFD-like [2Fe-2S] binding domain D8O08_009035 PF00083 Sugar (and other) transporter D8O08_009040 PF00171 Aldehyde dehydrogenase family D8O08_009045 PF13520 Amino acid permease D8O08_009050 PF03315 Serine dehydratase beta chain D8O08_009050 PF03313 Serine dehydratase alpha chain D8O08_009055 PF00171 Aldehyde dehydrogenase family D8O08_009055 PF01575 MaoC like domain D8O08_009060 PF05138 Phenylacetic acid catabolic protein D8O08_009065 PF06243 Phenylacetic acid degradation B D8O08_009070 PF05138 Phenylacetic acid catabolic protein D8O08_009075 PF01883 Iron-sulfur cluster assembly protein D8O08_009080 PF00175 Oxidoreductase NAD-binding domain D8O08_009080 PF00111 2Fe-2S iron-sulfur cluster binding domain D8O08_009080 PF00970 Oxidoreductase FAD-binding domain D8O08_009085 PF00378 Enoyl-CoA hydratase/isomerase D8O08_009090 PF00378 Enoyl-CoA hydratase/isomerase D8O08_009095 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain D8O08_009095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D8O08_009095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D8O08_009100 PF02803 Thiolase, C-terminal domain D8O08_009100 PF00108 Thiolase, N-terminal domain D8O08_009105 PF00501 AMP-binding enzyme D8O08_009105 PF14535 AMP-binding enzyme C-terminal domain D8O08_009110 PF07848 PaaX-like protein D8O08_009110 PF08223 PaaX-like protein C-terminal domain D8O08_009115 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_009120 PF03061 Thioesterase superfamily D8O08_009160 PF00199 Catalase D8O08_009165 PF01292 Prokaryotic cytochrome b561 D8O08_009185 PF12697 Alpha/beta hydrolase family D8O08_009190 PF01613 Flavin reductase like domain D8O08_009200 PF00171 Aldehyde dehydrogenase family D8O08_009210 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D8O08_009225 PF02627 Carboxymuconolactone decarboxylase family D8O08_009230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_009230 PF03466 LysR substrate binding domain D8O08_009235 PF02525 Flavodoxin-like fold D8O08_009240 PF01614 Bacterial transcriptional regulator D8O08_009240 PF09339 IclR helix-turn-helix domain D8O08_009245 PF01494 FAD binding domain D8O08_009250 PF00392 Bacterial regulatory proteins, gntR family D8O08_009250 PF07702 UTRA domain D8O08_009260 PF08402 TOBE domain D8O08_009260 PF00005 ABC transporter D8O08_009265 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_009270 PF01266 FAD dependent oxidoreductase D8O08_009275 PF00266 Aminotransferase class-V D8O08_009280 PF13419 Haloacid dehalogenase-like hydrolase D8O08_009285 PF07690 Major Facilitator Superfamily D8O08_009290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_009290 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_009290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_009295 PF02515 CoA-transferase family III D8O08_009300 PF09339 IclR helix-turn-helix domain D8O08_009305 PF00378 Enoyl-CoA hydratase/isomerase D8O08_009310 PF03060 Nitronate monooxygenase D8O08_009315 PF07690 Major Facilitator Superfamily D8O08_009320 PF09339 IclR helix-turn-helix domain D8O08_009325 PF02803 Thiolase, C-terminal domain D8O08_009325 PF00108 Thiolase, N-terminal domain D8O08_009330 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain D8O08_009330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D8O08_009330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D8O08_009340 PF00378 Enoyl-CoA hydratase/isomerase D8O08_009345 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_009345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_009345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_009350 PF07690 Major Facilitator Superfamily D8O08_009355 PF01144 Coenzyme A transferase D8O08_009360 PF01144 Coenzyme A transferase D8O08_009370 PF07690 Major Facilitator Superfamily D8O08_009380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_009380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_009380 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_009380 PF12806 Acetyl-CoA dehydrogenase C-terminal like D8O08_009395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_009395 PF03466 LysR substrate binding domain D8O08_009400 PF00682 HMGL-like D8O08_009405 PF00364 Biotin-requiring enzyme D8O08_009405 PF02785 Biotin carboxylase C-terminal domain D8O08_009405 PF00289 Biotin carboxylase, N-terminal domain D8O08_009405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D8O08_009410 PF00378 Enoyl-CoA hydratase/isomerase D8O08_009415 PF01039 Carboxyl transferase domain D8O08_009420 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_009420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_009420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_009425 PF00440 Bacterial regulatory proteins, tetR family D8O08_009430 PF13193 AMP-binding enzyme C-terminal domain D8O08_009430 PF00501 AMP-binding enzyme D8O08_009450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_009450 PF03466 LysR substrate binding domain D8O08_009480 PF18146 Damage-inducible protein CinA KH domain D8O08_009480 PF02464 Competence-damaged protein D8O08_009480 PF00994 Probable molybdopterin binding domain D8O08_009490 PF18011 C-terminal domain found in long catalases D8O08_009490 PF06628 Catalase-related immune-responsive D8O08_009490 PF00199 Catalase D8O08_009515 PF00717 Peptidase S24-like D8O08_009525 PF01037 Lrp/AsnC ligand binding domain D8O08_009525 PF13404 AsnC-type helix-turn-helix domain D8O08_009535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_009535 PF00512 His Kinase A (phospho-acceptor) domain D8O08_009535 PF09308 LuxQ, periplasmic D8O08_009535 PF00072 Response regulator receiver domain D8O08_009565 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_009570 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_009575 PF00005 ABC transporter D8O08_009580 PF00497 Bacterial extracellular solute-binding proteins, family 3 D8O08_009585 PF00497 Bacterial extracellular solute-binding proteins, family 3 D8O08_009595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_009595 PF03466 LysR substrate binding domain D8O08_009600 PF01810 LysE type translocator D8O08_009605 PF00266 Aminotransferase class-V D8O08_009615 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_009620 PF00581 Rhodanese-like domain D8O08_009630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_009630 PF03466 LysR substrate binding domain D8O08_009635 PF02798 Glutathione S-transferase, N-terminal domain D8O08_009640 PF14834 Glutathione S-transferase, C-terminal domain D8O08_009640 PF02798 Glutathione S-transferase, N-terminal domain D8O08_009645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_009645 PF03466 LysR substrate binding domain D8O08_009650 PF03788 LrgA family D8O08_009655 PF04172 LrgB-like family D8O08_009660 PF00392 Bacterial regulatory proteins, gntR family D8O08_009660 PF00155 Aminotransferase class I and II D8O08_009675 PF07690 Major Facilitator Superfamily D8O08_009680 PF16957 Malonate decarboxylase, alpha subunit, transporter D8O08_009685 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase D8O08_009690 PF06857 Malonate decarboxylase delta subunit (MdcD) D8O08_009695 PF01039 Carboxyl transferase domain D8O08_009705 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG D8O08_009710 PF00698 Acyl transferase domain D8O08_009730 PF00392 Bacterial regulatory proteins, gntR family D8O08_009730 PF00155 Aminotransferase class I and II D8O08_009740 PF02322 Cytochrome bd terminal oxidase subunit II D8O08_009745 PF01654 Cytochrome bd terminal oxidase subunit I D8O08_009760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_009760 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_009760 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D8O08_009765 PF00296 Luciferase-like monooxygenase D8O08_009770 PF00083 Sugar (and other) transporter D8O08_009780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D8O08_009785 PF00005 ABC transporter D8O08_009790 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_009800 PF01177 Asp/Glu/Hydantoin racemase D8O08_009805 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D8O08_009815 PF03466 LysR substrate binding domain D8O08_009815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_009825 PF13382 Adenine deaminase C-terminal domain D8O08_009825 PF01979 Amidohydrolase family D8O08_009835 PF03960 ArsC family D8O08_009840 PF01022 Bacterial regulatory protein, arsR family D8O08_009845 PF01758 Sodium Bile acid symporter family D8O08_009855 PF03466 LysR substrate binding domain D8O08_009855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_009870 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_009870 PF13192 Thioredoxin domain D8O08_009885 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_009890 PF00588 SpoU rRNA Methylase family D8O08_009895 PF01336 OB-fold nucleic acid binding domain D8O08_009895 PF02811 PHP domain D8O08_009895 PF07733 Bacterial DNA polymerase III alpha NTPase domain D8O08_009895 PF14579 Helix-hairpin-helix motif D8O08_009895 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D8O08_009900 PF17763 Glutaminase/Asparaginase C-terminal domain D8O08_009900 PF00710 Asparaginase, N-terminal D8O08_009905 PF00375 Sodium:dicarboxylate symporter family D8O08_009910 PF00155 Aminotransferase class I and II D8O08_009915 PF01641 SelR domain D8O08_009920 PF00255 Glutathione peroxidase D8O08_009925 PF12833 Helix-turn-helix domain D8O08_009925 PF12852 Cupin D8O08_009935 PF00155 Aminotransferase class I and II D8O08_009940 PF08335 GlnD PII-uridylyltransferase D8O08_009940 PF01966 HD domain D8O08_009940 PF01909 Nucleotidyltransferase domain D8O08_009945 PF02222 ATP-grasp domain D8O08_009955 PF05437 Branched-chain amino acid transport protein (AzlD) D8O08_009960 PF03591 AzlC protein D8O08_009985 PF01926 50S ribosome-binding GTPase D8O08_009985 PF06071 Protein of unknown function (DUF933) D8O08_009990 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_009995 PF09383 NIL domain D8O08_009995 PF00005 ABC transporter D8O08_010000 PF03180 NLPA lipoprotein D8O08_010005 PF03180 NLPA lipoprotein D8O08_010020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_010020 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D8O08_010035 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_010040 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_010045 PF00005 ABC transporter D8O08_010055 PF01037 Lrp/AsnC ligand binding domain D8O08_010060 PF01709 Transcriptional regulator D8O08_010070 PF00440 Bacterial regulatory proteins, tetR family D8O08_010090 PF03466 LysR substrate binding domain D8O08_010090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_010100 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D8O08_010110 PF00892 EamA-like transporter family D8O08_010135 PF13953 PapC C-terminal domain D8O08_010135 PF00577 Outer membrane usher protein D8O08_010135 PF13954 PapC N-terminal domain D8O08_010140 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D8O08_010140 PF02753 Pili assembly chaperone PapD, C-terminal domain D8O08_010145 PF16970 Type-1 fimbrial protein, A D8O08_010165 PF06968 Biotin and Thiamin Synthesis associated domain D8O08_010165 PF04055 Radical SAM superfamily D8O08_010170 PF08331 Domain of unknown function (DUF1730) D8O08_010175 PF03853 YjeF-related protein N-terminus D8O08_010175 PF01256 Carbohydrate kinase D8O08_010180 PF02075 Crossover junction endodeoxyribonuclease RuvC D8O08_010195 PF00905 Penicillin binding protein transpeptidase domain D8O08_010215 PF02773 S-adenosylmethionine synthetase, C-terminal domain D8O08_010215 PF00438 S-adenosylmethionine synthetase, N-terminal domain D8O08_010215 PF02772 S-adenosylmethionine synthetase, central domain D8O08_010220 PF02779 Transketolase, pyrimidine binding domain D8O08_010220 PF02780 Transketolase, C-terminal domain D8O08_010220 PF00456 Transketolase, thiamine diphosphate binding domain D8O08_010230 PF04264 YceI-like domain D8O08_010240 PF09992 Phosphodiester glycosidase D8O08_010255 PF04229 GrpB protein D8O08_010260 PF00171 Aldehyde dehydrogenase family D8O08_010260 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D8O08_010260 PF14850 DNA-binding domain of Proline dehydrogenase D8O08_010260 PF01619 Proline dehydrogenase D8O08_010265 PF01037 Lrp/AsnC ligand binding domain D8O08_010270 PF00474 Sodium:solute symporter family D8O08_010275 PF02146 Sir2 family D8O08_010280 PF01597 Glycine cleavage H-protein D8O08_010285 PF12833 Helix-turn-helix domain D8O08_010285 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term D8O08_010295 PF00005 ABC transporter D8O08_010295 PF00664 ABC transporter transmembrane region D8O08_010305 PF06912 Protein of unknown function (DUF1275) D8O08_010310 PF00375 Sodium:dicarboxylate symporter family D8O08_010325 PF08007 Cupin superfamily protein D8O08_010330 PF02545 Maf-like protein D8O08_010340 PF00162 Phosphoglycerate kinase D8O08_010350 PF01116 Fructose-bisphosphate aldolase class-II D8O08_010355 PF00639 PPIC-type PPIASE domain D8O08_010355 PF09312 SurA N-terminal domain D8O08_010360 PF03968 OstA-like protein D8O08_010360 PF04453 LPS transport system D D8O08_010365 PF01636 Phosphotransferase enzyme family D8O08_010370 PF00483 Nucleotidyl transferase D8O08_010375 PF02527 rRNA small subunit methyltransferase G D8O08_010380 PF13614 AAA domain D8O08_010385 PF17762 HTH domain found in ParB protein D8O08_010385 PF02195 ParB-like nuclease domain D8O08_010390 PF01618 MotA/TolQ/ExbB proton channel family D8O08_010400 PF00005 ABC transporter D8O08_010400 PF00664 ABC transporter transmembrane region D8O08_010405 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D8O08_010415 PF09115 DNA polymerase III, delta subunit, C terminal D8O08_010425 PF01026 TatD related DNase D8O08_010440 PF02501 Type II secretion system (T2SS), protein I D8O08_010440 PF07963 Prokaryotic N-terminal methylation motif D8O08_010445 PF07963 Prokaryotic N-terminal methylation motif D8O08_010445 PF11612 Type II secretion system (T2SS), protein J D8O08_010450 PF03934 Type II secretion system (T2SS), protein K D8O08_010460 PF03167 Uracil DNA glycosylase superfamily D8O08_010480 PF02224 Cytidylate kinase D8O08_010485 PF00575 S1 RNA binding domain D8O08_010490 PF00216 Bacterial DNA-binding protein D8O08_010500 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D8O08_010510 PF00743 Flavin-binding monooxygenase-like D8O08_010520 PF03969 AFG1-like ATPase D8O08_010525 PF00589 Phage integrase family D8O08_010525 PF02899 Phage integrase, N-terminal SAM-like domain D8O08_010580 PF00772 DnaB-like helicase N terminal domain D8O08_010580 PF03796 DnaB-like helicase C terminal domain D8O08_010670 PF04860 Phage portal protein D8O08_010725 PF01551 Peptidase family M23 D8O08_010725 PF10145 Phage-related minor tail protein D8O08_010725 PF01464 Transglycosylase SLT domain D8O08_010795 PF01274 Malate synthase D8O08_010805 PF02472 Biopolymer transport protein ExbD/TolR D8O08_010810 PF02472 Biopolymer transport protein ExbD/TolR D8O08_010815 PF01618 MotA/TolQ/ExbB proton channel family D8O08_010845 PF01432 Peptidase family M3 D8O08_010850 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_010855 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_010875 PF00459 Inositol monophosphatase family D8O08_010885 PF01649 Ribosomal protein S20 D8O08_010890 PF13460 NAD(P)H-binding D8O08_010895 PF03737 Aldolase/RraA D8O08_010915 PF00271 Helicase conserved C-terminal domain D8O08_010915 PF03461 TRCF domain D8O08_010915 PF17757 UvrB interaction domain D8O08_010915 PF00270 DEAD/DEAH box helicase D8O08_010915 PF02559 CarD-like/TRCF domain D8O08_010925 PF00211 Adenylate and Guanylate cyclase catalytic domain D8O08_010930 PF00111 2Fe-2S iron-sulfur cluster binding domain D8O08_010935 PF00012 Hsp70 protein D8O08_010940 PF00226 DnaJ domain D8O08_010940 PF07743 HSCB C-terminal oligomerisation domain D8O08_010945 PF01521 Iron-sulphur cluster biosynthesis D8O08_010950 PF01592 NifU-like N terminal domain D8O08_010955 PF00266 Aminotransferase class-V D8O08_010960 PF02082 Transcriptional regulator D8O08_010975 PF00216 Bacterial DNA-binding protein D8O08_010980 PF00639 PPIC-type PPIASE domain D8O08_010980 PF09312 SurA N-terminal domain D8O08_010985 PF12852 Cupin D8O08_010985 PF12833 Helix-turn-helix domain D8O08_010990 PF00487 Fatty acid desaturase D8O08_010995 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_010995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_010995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_011000 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_011000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_011000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_011005 PF03109 ABC1 family D8O08_011020 PF04183 IucA / IucC family D8O08_011020 PF06276 Ferric iron reductase FhuF-like transporter D8O08_011025 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) D8O08_011030 PF07690 Major Facilitator Superfamily D8O08_011035 PF06276 Ferric iron reductase FhuF-like transporter D8O08_011035 PF04183 IucA / IucC family D8O08_011055 PF00593 TonB dependent receptor D8O08_011055 PF07715 TonB-dependent Receptor Plug Domain D8O08_011095 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase D8O08_011100 PF02277 Phosphoribosyltransferase D8O08_011115 PF02654 Cobalamin-5-phosphate synthase D8O08_011120 PF00793 DAHP synthetase I family D8O08_011125 PF01925 Sulfite exporter TauE/SafE D8O08_011145 PF00593 TonB dependent receptor D8O08_011145 PF07715 TonB-dependent Receptor Plug Domain D8O08_011150 PF02684 Lipid-A-disaccharide synthetase D8O08_011160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D8O08_011165 PF00005 ABC transporter D8O08_011200 PF01230 HIT domain D8O08_011230 PF08241 Methyltransferase domain D8O08_011235 PF00561 alpha/beta hydrolase fold D8O08_011240 PF01053 Cys/Met metabolism PLP-dependent enzyme D8O08_011250 PF02575 YbaB/EbfC DNA-binding family D8O08_011255 PF13662 Toprim domain D8O08_011255 PF02132 RecR protein D8O08_011260 PF01612 3'-5' exonuclease D8O08_011260 PF00570 HRDC domain D8O08_011280 PF05166 YcgL domain D8O08_011290 PF01434 Peptidase family M41 D8O08_011290 PF17862 AAA+ lid domain D8O08_011290 PF00004 ATPase family associated with various cellular activities (AAA) D8O08_011300 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_011305 PF05175 Methyltransferase small domain D8O08_011310 PF01264 Chorismate synthase D8O08_011315 PF08448 PAS fold D8O08_011315 PF00990 Diguanylate cyclase, GGDEF domain D8O08_011330 PF04055 Radical SAM superfamily D8O08_011335 PF00676 Dehydrogenase E1 component D8O08_011340 PF02779 Transketolase, pyrimidine binding domain D8O08_011340 PF02780 Transketolase, C-terminal domain D8O08_011345 PF02817 e3 binding domain D8O08_011345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D8O08_011345 PF00364 Biotin-requiring enzyme D8O08_011350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D8O08_011350 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_011355 PF00106 short chain dehydrogenase D8O08_011360 PF00107 Zinc-binding dehydrogenase D8O08_011360 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_011365 PF01062 Bestrophin, RFP-TM, chloride channel D8O08_011370 PF02954 Bacterial regulatory protein, Fis family D8O08_011370 PF00072 Response regulator receiver domain D8O08_011370 PF00158 Sigma-54 interaction domain D8O08_011375 PF00753 Metallo-beta-lactamase superfamily D8O08_011375 PF04273 Putative phosphatase (DUF442) D8O08_011380 PF04273 Putative phosphatase (DUF442) D8O08_011380 PF00753 Metallo-beta-lactamase superfamily D8O08_011385 PF01925 Sulfite exporter TauE/SafE D8O08_011400 PF12833 Helix-turn-helix domain D8O08_011400 PF06445 GyrI-like small molecule binding domain D8O08_011405 PF01638 HxlR-like helix-turn-helix D8O08_011410 PF02525 Flavodoxin-like fold D8O08_011435 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D8O08_011440 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_011445 PF00005 ABC transporter D8O08_011460 PF00083 Sugar (and other) transporter D8O08_011470 PF10415 Fumarase C C-terminus D8O08_011470 PF00206 Lyase D8O08_011485 PF03466 LysR substrate binding domain D8O08_011485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_011495 PF02803 Thiolase, C-terminal domain D8O08_011495 PF00108 Thiolase, N-terminal domain D8O08_011505 PF01144 Coenzyme A transferase D8O08_011510 PF01144 Coenzyme A transferase D8O08_011515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_011515 PF03466 LysR substrate binding domain D8O08_011540 PF06719 AraC-type transcriptional regulator N-terminus D8O08_011540 PF12833 Helix-turn-helix domain D8O08_011545 PF07690 Major Facilitator Superfamily D8O08_011550 PF01738 Dienelactone hydrolase family D8O08_011565 PF01613 Flavin reductase like domain D8O08_011575 PF12833 Helix-turn-helix domain D8O08_011575 PF14525 AraC-binding-like domain D8O08_011580 PF00111 2Fe-2S iron-sulfur cluster binding domain D8O08_011580 PF00175 Oxidoreductase NAD-binding domain D8O08_011580 PF00970 Oxidoreductase FAD-binding domain D8O08_011585 PF00866 Ring hydroxylating beta subunit D8O08_011590 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D8O08_011590 PF00355 Rieske [2Fe-2S] domain D8O08_011595 PF03459 TOBE domain D8O08_011595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_011605 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_011610 PF00005 ABC transporter D8O08_011610 PF03459 TOBE domain D8O08_011615 PF00106 short chain dehydrogenase D8O08_011630 PF00149 Calcineurin-like phosphoesterase D8O08_011635 PF13089 Polyphosphate kinase N-terminal domain D8O08_011635 PF17941 Polyphosphate kinase C-terminal domain 1 D8O08_011635 PF02503 Polyphosphate kinase middle domain D8O08_011635 PF13090 Polyphosphate kinase C-terminal domain 2 D8O08_011640 PF08042 PqqA family D8O08_011645 PF12706 Beta-lactamase superfamily domain D8O08_011650 PF03070 TENA/THI-4/PQQC family D8O08_011655 PF05402 Coenzyme PQQ synthesis protein D (PqqD) D8O08_011660 PF04055 Radical SAM superfamily D8O08_011660 PF13186 Iron-sulfur cluster-binding domain D8O08_011665 PF01244 Membrane dipeptidase (Peptidase family M19) D8O08_011685 PF13091 PLD-like domain D8O08_011700 PF00199 Catalase D8O08_011710 PF00107 Zinc-binding dehydrogenase D8O08_011710 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_011720 PF00419 Fimbrial protein D8O08_011725 PF13953 PapC C-terminal domain D8O08_011725 PF13954 PapC N-terminal domain D8O08_011725 PF00577 Outer membrane usher protein D8O08_011730 PF02753 Pili assembly chaperone PapD, C-terminal domain D8O08_011730 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D8O08_011740 PF16970 Type-1 fimbrial protein, A D8O08_011760 PF01266 FAD dependent oxidoreductase D8O08_011775 PF01593 Flavin containing amine oxidoreductase D8O08_011780 PF00743 Flavin-binding monooxygenase-like D8O08_011785 PF12146 Serine aminopeptidase, S33 D8O08_011790 PF02321 Outer membrane efflux protein D8O08_011795 PF00873 AcrB/AcrD/AcrF family D8O08_011800 PF00529 HlyD membrane-fusion protein of T1SS D8O08_011800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D8O08_011805 PF00486 Transcriptional regulatory protein, C terminal D8O08_011805 PF00072 Response regulator receiver domain D8O08_011810 PF00672 HAMP domain D8O08_011810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_011810 PF00512 His Kinase A (phospho-acceptor) domain D8O08_011810 PF16527 Two-component sensor protein CpxA, periplasmic domain D8O08_011820 PF12833 Helix-turn-helix domain D8O08_011820 PF02311 AraC-like ligand binding domain D8O08_011825 PF12146 Serine aminopeptidase, S33 D8O08_011880 PF13291 ACT domain D8O08_011880 PF02824 TGS domain D8O08_011880 PF04607 Region found in RelA / SpoT proteins D8O08_011890 PF01975 Survival protein SurE D8O08_011915 PF07690 Major Facilitator Superfamily D8O08_011920 PF13533 Biotin-lipoyl like D8O08_011925 PF01425 Amidase D8O08_011930 PF00196 Bacterial regulatory proteins, luxR family D8O08_012020 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D8O08_012025 PF14572 Phosphoribosyl synthetase-associated domain D8O08_012025 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D8O08_012045 PF00005 ABC transporter D8O08_012060 PF00107 Zinc-binding dehydrogenase D8O08_012060 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_012075 PF12833 Helix-turn-helix domain D8O08_012075 PF06719 AraC-type transcriptional regulator N-terminus D8O08_012080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D8O08_012080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D8O08_012085 PF07690 Major Facilitator Superfamily D8O08_012090 PF01370 NAD dependent epimerase/dehydratase family D8O08_012095 PF03466 LysR substrate binding domain D8O08_012095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_012105 PF00920 Dehydratase family D8O08_012110 PF00171 Aldehyde dehydrogenase family D8O08_012125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D8O08_012125 PF00529 HlyD membrane-fusion protein of T1SS D8O08_012150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D8O08_012150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D8O08_012150 PF01842 ACT domain D8O08_012155 PF07690 Major Facilitator Superfamily D8O08_012175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_012175 PF03466 LysR substrate binding domain D8O08_012185 PF08450 SMP-30/Gluconolactonase/LRE-like region D8O08_012200 PF04909 Amidohydrolase D8O08_012205 PF07690 Major Facilitator Superfamily D8O08_012240 PF07687 Peptidase dimerisation domain D8O08_012240 PF01546 Peptidase family M20/M25/M40 D8O08_012250 PF00999 Sodium/hydrogen exchanger family D8O08_012250 PF02254 TrkA-N domain D8O08_012255 PF07995 Glucose / Sorbosone dehydrogenase D8O08_012265 PF00857 Isochorismatase family D8O08_012275 PF08359 YsiA-like protein, C-terminal region D8O08_012275 PF00440 Bacterial regulatory proteins, tetR family D8O08_012280 PF12706 Beta-lactamase superfamily domain D8O08_012290 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_012300 PF00376 MerR family regulatory protein D8O08_012300 PF09278 MerR, DNA binding D8O08_012305 PF01872 RibD C-terminal domain D8O08_012310 PF00106 short chain dehydrogenase D8O08_012315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D8O08_012315 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_012320 PF01047 MarR family D8O08_012325 PF07859 alpha/beta hydrolase fold D8O08_012345 PF06628 Catalase-related immune-responsive D8O08_012345 PF00199 Catalase D8O08_012350 PF00561 alpha/beta hydrolase fold D8O08_012360 PF00171 Aldehyde dehydrogenase family D8O08_012365 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_012365 PF00107 Zinc-binding dehydrogenase D8O08_012375 PF04341 Protein of unknown function, DUF485 D8O08_012380 PF00501 AMP-binding enzyme D8O08_012380 PF13193 AMP-binding enzyme C-terminal domain D8O08_012385 PF00158 Sigma-54 interaction domain D8O08_012385 PF02954 Bacterial regulatory protein, Fis family D8O08_012385 PF06506 Propionate catabolism activator D8O08_012395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_012395 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_012395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_012415 PF00171 Aldehyde dehydrogenase family D8O08_012425 PF07690 Major Facilitator Superfamily D8O08_012430 PF00920 Dehydratase family D8O08_012435 PF07729 FCD domain D8O08_012435 PF00392 Bacterial regulatory proteins, gntR family D8O08_012445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_012445 PF03466 LysR substrate binding domain D8O08_012450 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D8O08_012450 PF13378 Enolase C-terminal domain-like D8O08_012455 PF02426 Muconolactone delta-isomerase D8O08_012460 PF00775 Dioxygenase D8O08_012460 PF04444 Catechol dioxygenase N terminus D8O08_012465 PF01144 Coenzyme A transferase D8O08_012470 PF01144 Coenzyme A transferase D8O08_012475 PF02803 Thiolase, C-terminal domain D8O08_012475 PF00108 Thiolase, N-terminal domain D8O08_012480 PF12146 Serine aminopeptidase, S33 D8O08_012485 PF01804 Penicillin amidase D8O08_012490 PF00171 Aldehyde dehydrogenase family D8O08_012500 PF02728 Copper amine oxidase, N3 domain D8O08_012500 PF02727 Copper amine oxidase, N2 domain D8O08_012500 PF07833 Copper amine oxidase N-terminal domain D8O08_012500 PF01179 Copper amine oxidase, enzyme domain D8O08_012505 PF02311 AraC-like ligand binding domain D8O08_012505 PF12833 Helix-turn-helix domain D8O08_012510 PF01613 Flavin reductase like domain D8O08_012515 PF00111 2Fe-2S iron-sulfur cluster binding domain D8O08_012515 PF00175 Oxidoreductase NAD-binding domain D8O08_012530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D8O08_012530 PF00355 Rieske [2Fe-2S] domain D8O08_012545 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D8O08_012550 PF01425 Amidase D8O08_012560 PF07690 Major Facilitator Superfamily D8O08_012570 PF00106 short chain dehydrogenase D8O08_012585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_012585 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_012585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_012590 PF03466 LysR substrate binding domain D8O08_012590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_012595 PF01614 Bacterial transcriptional regulator D8O08_012595 PF09339 IclR helix-turn-helix domain D8O08_012600 PF00753 Metallo-beta-lactamase superfamily D8O08_012610 PF04143 Sulphur transport D8O08_012620 PF01011 PQQ enzyme repeat D8O08_012620 PF13360 PQQ-like domain D8O08_012625 PF04966 Carbohydrate-selective porin, OprB family D8O08_012635 PF01487 Type I 3-dehydroquinase D8O08_012640 PF00775 Dioxygenase D8O08_012645 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal D8O08_012645 PF00775 Dioxygenase D8O08_012650 PF02627 Carboxymuconolactone decarboxylase family D8O08_012655 PF07690 Major Facilitator Superfamily D8O08_012660 PF00561 alpha/beta hydrolase fold D8O08_012665 PF00206 Lyase D8O08_012665 PF10397 Adenylosuccinate lyase C-terminus D8O08_012670 PF02803 Thiolase, C-terminal domain D8O08_012670 PF00108 Thiolase, N-terminal domain D8O08_012675 PF01144 Coenzyme A transferase D8O08_012680 PF01144 Coenzyme A transferase D8O08_012685 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D8O08_012690 PF04977 Septum formation initiator D8O08_012695 PF04239 Protein of unknown function (DUF421) D8O08_012700 PF00113 Enolase, C-terminal TIM barrel domain D8O08_012700 PF03952 Enolase, N-terminal domain D8O08_012705 PF00793 DAHP synthetase I family D8O08_012710 PF00117 Glutamine amidotransferase class-I D8O08_012710 PF06418 CTP synthase N-terminus D8O08_012740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D8O08_012740 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_012755 PF00793 DAHP synthetase I family D8O08_012760 PF02694 Uncharacterised BCR, YnfA/UPF0060 family D8O08_012765 PF10431 C-terminal, D2-small domain, of ClpB protein D8O08_012765 PF00004 ATPase family associated with various cellular activities (AAA) D8O08_012765 PF07724 AAA domain (Cdc48 subfamily) D8O08_012765 PF02861 Clp amino terminal domain, pathogenicity island component D8O08_012765 PF17871 AAA lid domain D8O08_012770 PF02617 ATP-dependent Clp protease adaptor protein ClpS D8O08_012780 PF02774 Semialdehyde dehydrogenase, dimerisation domain D8O08_012780 PF01118 Semialdehyde dehydrogenase, NAD binding domain D8O08_012795 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D8O08_012800 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_012800 PF00585 C-terminal regulatory domain of Threonine dehydratase D8O08_012805 PF02254 TrkA-N domain D8O08_012805 PF02080 TrkA-C domain D8O08_012810 PF02386 Cation transport protein D8O08_012815 PF02253 Phospholipase A1 D8O08_012820 PF05193 Peptidase M16 inactive domain D8O08_012820 PF00675 Insulinase (Peptidase family M16) D8O08_012820 PF08367 Peptidase M16C associated D8O08_012825 PF00593 TonB dependent receptor D8O08_012825 PF07715 TonB-dependent Receptor Plug Domain D8O08_012830 PF00294 pfkB family carbohydrate kinase D8O08_012840 PF07290 Protein of unknown function (DUF1449) D8O08_012860 PF01654 Cytochrome bd terminal oxidase subunit I D8O08_012865 PF02322 Cytochrome bd terminal oxidase subunit II D8O08_012870 PF08173 Membrane bound YbgT-like protein D8O08_012885 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D8O08_012895 PF00448 SRP54-type protein, GTPase domain D8O08_012895 PF02881 SRP54-type protein, helical bundle domain D8O08_012920 PF00571 CBS domain D8O08_012920 PF00478 IMP dehydrogenase / GMP reductase domain D8O08_012925 PF00202 Aminotransferase class-III D8O08_012930 PF00462 Glutaredoxin D8O08_012940 PF03466 LysR substrate binding domain D8O08_012940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_012945 PF00557 Metallopeptidase family M24 D8O08_012950 PF05525 Branched-chain amino acid transport protein D8O08_012975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D8O08_012975 PF05524 PEP-utilising enzyme, N-terminal D8O08_012975 PF00391 PEP-utilising enzyme, mobile domain D8O08_012975 PF02896 PEP-utilising enzyme, TIM barrel domain D8O08_012975 PF00381 PTS HPr component phosphorylation site D8O08_012985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D8O08_012985 PF02378 Phosphotransferase system, EIIC D8O08_013005 PF00990 Diguanylate cyclase, GGDEF domain D8O08_013005 PF00563 EAL domain D8O08_013005 PF03707 Bacterial signalling protein N terminal repeat D8O08_013015 PF07995 Glucose / Sorbosone dehydrogenase D8O08_013020 PF02586 SOS response associated peptidase (SRAP) D8O08_013025 PF01740 STAS domain D8O08_013025 PF00916 Sulfate permease family D8O08_013030 PF00082 Subtilase family D8O08_013030 PF05922 Peptidase inhibitor I9 D8O08_013040 PF00324 Amino acid permease D8O08_013045 PF00266 Aminotransferase class-V D8O08_013050 PF01037 Lrp/AsnC ligand binding domain D8O08_013075 PF13419 Haloacid dehalogenase-like hydrolase D8O08_013080 PF01479 S4 domain D8O08_013085 PF00154 recA bacterial DNA recombination protein D8O08_013090 PF02631 RecX family D8O08_013105 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_013105 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D8O08_013110 PF07977 FabA-like domain D8O08_013115 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D8O08_013115 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_013130 PF02163 Peptidase family M50 D8O08_013130 PF17820 PDZ domain D8O08_013130 PF13180 PDZ domain D8O08_013135 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D8O08_013135 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D8O08_013135 PF13288 DXP reductoisomerase C-terminal domain D8O08_013145 PF01255 Putative undecaprenyl diphosphate synthase D8O08_013150 PF01765 Ribosome recycling factor D8O08_013155 PF00696 Amino acid kinase family D8O08_013160 PF04055 Radical SAM superfamily D8O08_013160 PF18693 TRAM domain D8O08_013160 PF00919 Uncharacterized protein family UPF0004 D8O08_013170 PF00989 PAS fold D8O08_013170 PF00512 His Kinase A (phospho-acceptor) domain D8O08_013170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_013175 PF00158 Sigma-54 interaction domain D8O08_013175 PF02954 Bacterial regulatory protein, Fis family D8O08_013175 PF00072 Response regulator receiver domain D8O08_013180 PF00440 Bacterial regulatory proteins, tetR family D8O08_013185 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D8O08_013185 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D8O08_013195 PF02542 YgbB family D8O08_013205 PF01266 FAD dependent oxidoreductase D8O08_013230 PF10415 Fumarase C C-terminus D8O08_013230 PF00206 Lyase D8O08_013235 PF16363 GDP-mannose 4,6 dehydratase D8O08_013240 PF02635 DsrE/DsrF-like family D8O08_013260 PF00892 EamA-like transporter family D8O08_013265 PF00392 Bacterial regulatory proteins, gntR family D8O08_013265 PF00155 Aminotransferase class I and II D8O08_013270 PF01638 HxlR-like helix-turn-helix D8O08_013275 PF03454 MoeA C-terminal region (domain IV) D8O08_013275 PF00994 Probable molybdopterin binding domain D8O08_013275 PF03453 MoeA N-terminal region (domain I and II) D8O08_013280 PF01967 MoaC family D8O08_013280 PF00994 Probable molybdopterin binding domain D8O08_013285 PF02391 MoaE protein D8O08_013295 PF04055 Radical SAM superfamily D8O08_013295 PF06463 Molybdenum Cofactor Synthesis C D8O08_013300 PF01568 Molydopterin dinucleotide binding domain D8O08_013300 PF00384 Molybdopterin oxidoreductase D8O08_013300 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D8O08_013305 PF12804 MobA-like NTP transferase domain D8O08_013310 PF00384 Molybdopterin oxidoreductase D8O08_013310 PF01568 Molydopterin dinucleotide binding domain D8O08_013310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D8O08_013310 PF04324 BFD-like [2Fe-2S] binding domain D8O08_013315 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D8O08_013315 PF04324 BFD-like [2Fe-2S] binding domain D8O08_013315 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D8O08_013315 PF18267 Rubredoxin NAD+ reductase C-terminal domain D8O08_013315 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_013320 PF18267 Rubredoxin NAD+ reductase C-terminal domain D8O08_013320 PF13806 Rieske-like [2Fe-2S] domain D8O08_013320 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_013320 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D8O08_013320 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D8O08_013320 PF04324 BFD-like [2Fe-2S] binding domain D8O08_013330 PF00072 Response regulator receiver domain D8O08_013330 PF00486 Transcriptional regulatory protein, C terminal D8O08_013335 PF00005 ABC transporter D8O08_013345 PF11799 impB/mucB/samB family C-terminal domain D8O08_013345 PF00817 impB/mucB/samB family D8O08_013345 PF13438 Domain of unknown function (DUF4113) D8O08_013350 PF01220 Dehydroquinase class II D8O08_013355 PF00364 Biotin-requiring enzyme D8O08_013360 PF02785 Biotin carboxylase C-terminal domain D8O08_013360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D8O08_013360 PF00289 Biotin carboxylase, N-terminal domain D8O08_013370 PF12832 MFS_1 like family D8O08_013390 PF01645 Conserved region in glutamate synthase D8O08_013405 PF01565 FAD binding domain D8O08_013405 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D8O08_013420 PF00465 Iron-containing alcohol dehydrogenase D8O08_013425 PF03061 Thioesterase superfamily D8O08_013430 PF05506 Domain of unknown function (DUF756) D8O08_013430 PF04185 Phosphoesterase family D8O08_013435 PF12169 DNA polymerase III subunits gamma and tau domain III D8O08_013435 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D8O08_013435 PF12170 DNA polymerase III tau subunit V interacting with alpha D8O08_013440 PF07690 Major Facilitator Superfamily D8O08_013465 PF02803 Thiolase, C-terminal domain D8O08_013465 PF00108 Thiolase, N-terminal domain D8O08_013475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_013475 PF03466 LysR substrate binding domain D8O08_013485 PF01810 LysE type translocator D8O08_013490 PF01037 Lrp/AsnC ligand binding domain D8O08_013495 PF03594 Benzoate membrane transport protein D8O08_013500 PF02308 MgtC family D8O08_013505 PF00690 Cation transporter/ATPase, N-terminus D8O08_013505 PF00689 Cation transporting ATPase, C-terminus D8O08_013520 PF00582 Universal stress protein family D8O08_013525 PF12848 ABC transporter D8O08_013525 PF00005 ABC transporter D8O08_013545 PF07715 TonB-dependent Receptor Plug Domain D8O08_013545 PF00593 TonB dependent receptor D8O08_013580 PF00924 Mechanosensitive ion channel D8O08_013590 PF00440 Bacterial regulatory proteins, tetR family D8O08_013605 PF01037 Lrp/AsnC ligand binding domain D8O08_013610 PF01817 Chorismate mutase type II D8O08_013620 PF00106 short chain dehydrogenase D8O08_013630 PF01433 Peptidase family M1 domain D8O08_013630 PF11940 Domain of unknown function (DUF3458) Ig-like fold D8O08_013630 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D8O08_013645 PF02110 Hydroxyethylthiazole kinase family D8O08_013650 PF06445 GyrI-like small molecule binding domain D8O08_013665 PF00465 Iron-containing alcohol dehydrogenase D8O08_013680 PF00171 Aldehyde dehydrogenase family D8O08_013690 PF06751 Ethanolamine ammonia lyase large subunit (EutB) D8O08_013695 PF05985 Ethanolamine ammonia-lyase light chain (EutC) D8O08_013700 PF00958 GMP synthase C terminal domain D8O08_013700 PF00117 Glutamine amidotransferase class-I D8O08_013700 PF02540 NAD synthase D8O08_013705 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D8O08_013705 PF00749 tRNA synthetases class I (E and Q), catalytic domain D8O08_013710 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D8O08_013715 PF00149 Calcineurin-like phosphoesterase D8O08_013725 PF00881 Nitroreductase family D8O08_013735 PF17209 Hfq protein D8O08_013745 PF08676 MutL C terminal dimerisation domain D8O08_013745 PF01119 DNA mismatch repair protein, C-terminal domain D8O08_013750 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D8O08_013755 PF01479 S4 domain D8O08_013755 PF00849 RNA pseudouridylate synthase D8O08_013770 PF01479 S4 domain D8O08_013770 PF00849 RNA pseudouridylate synthase D8O08_013780 PF04284 Protein of unknown function (DUF441) D8O08_013785 PF03466 LysR substrate binding domain D8O08_013785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_013805 PF00520 Ion transport protein D8O08_013805 PF00027 Cyclic nucleotide-binding domain D8O08_013815 PF00330 Aconitase family (aconitate hydratase) D8O08_013815 PF11791 Aconitate B N-terminal domain D8O08_013815 PF06434 Aconitate hydratase 2 N-terminus D8O08_013835 PF01103 Surface antigen D8O08_013835 PF07244 Surface antigen variable number repeat D8O08_013835 PF17243 POTRA domain TamA domain 1 D8O08_013845 PF03232 Ubiquinone biosynthesis protein COQ7 D8O08_013855 PF00120 Glutamine synthetase, catalytic domain D8O08_013860 PF00486 Transcriptional regulatory protein, C terminal D8O08_013860 PF00072 Response regulator receiver domain D8O08_013865 PF00512 His Kinase A (phospho-acceptor) domain D8O08_013865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_013865 PF02702 Osmosensitive K+ channel His kinase sensor domain D8O08_013865 PF13493 Domain of unknown function (DUF4118) D8O08_013870 PF02669 K+-transporting ATPase, c chain D8O08_013880 PF03814 Potassium-transporting ATPase A subunit D8O08_013895 PF03109 ABC1 family D8O08_013900 PF00899 ThiF family D8O08_013905 PF01613 Flavin reductase like domain D8O08_013910 PF00501 AMP-binding enzyme D8O08_013910 PF13193 AMP-binding enzyme C-terminal domain D8O08_013915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_013915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_013915 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_013920 PF00106 short chain dehydrogenase D8O08_013925 PF12833 Helix-turn-helix domain D8O08_013930 PF09084 NMT1/THI5 like D8O08_013935 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_013940 PF17827 PrmC N-terminal domain D8O08_013940 PF13847 Methyltransferase domain D8O08_013945 PF03462 PCRF domain D8O08_013945 PF00472 RF-1 domain D8O08_013960 PF03466 LysR substrate binding domain D8O08_013960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_013980 PF00296 Luciferase-like monooxygenase D8O08_013990 PF13994 PgaD-like protein D8O08_013995 PF00535 Glycosyl transferase family 2 D8O08_014000 PF01522 Polysaccharide deacetylase D8O08_014000 PF14883 Hypothetical glycosyl hydrolase family 13 D8O08_014010 PF03618 Kinase/pyrophosphorylase D8O08_014015 PF00391 PEP-utilising enzyme, mobile domain D8O08_014015 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D8O08_014015 PF02896 PEP-utilising enzyme, TIM barrel domain D8O08_014025 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D8O08_014025 PF06481 COX Aromatic Rich Motif D8O08_014030 PF00115 Cytochrome C and Quinol oxidase polypeptide I D8O08_014035 PF00510 Cytochrome c oxidase subunit III D8O08_014040 PF03626 Prokaryotic Cytochrome C oxidase subunit IV D8O08_014045 PF01040 UbiA prenyltransferase family D8O08_014050 PF01250 Ribosomal protein S6 D8O08_014055 PF01084 Ribosomal protein S18 D8O08_014060 PF03948 Ribosomal protein L9, C-terminal domain D8O08_014060 PF01281 Ribosomal protein L9, N-terminal domain D8O08_014070 PF01168 Alanine racemase, N-terminal domain D8O08_014070 PF00842 Alanine racemase, C-terminal domain D8O08_014080 PF08379 Bacterial transglutaminase-like N-terminal region D8O08_014080 PF01841 Transglutaminase-like superfamily D8O08_014090 PF14403 Circularly permuted ATP-grasp type 2 D8O08_014100 PF13932 GidA associated domain D8O08_014100 PF01134 Glucose inhibited division protein A D8O08_014120 PF02954 Bacterial regulatory protein, Fis family D8O08_014125 PF01808 AICARFT/IMPCHase bienzyme D8O08_014125 PF02142 MGS-like domain D8O08_014130 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D8O08_014130 PF02843 Phosphoribosylglycinamide synthetase, C domain D8O08_014130 PF02844 Phosphoribosylglycinamide synthetase, N domain D8O08_014135 PF03180 NLPA lipoprotein D8O08_014140 PF00005 ABC transporter D8O08_014140 PF09383 NIL domain D8O08_014145 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_014150 PF00753 Metallo-beta-lactamase superfamily D8O08_014150 PF16123 Hydroxyacylglutathione hydrolase C-terminus D8O08_014160 PF00375 Sodium:dicarboxylate symporter family D8O08_014180 PF13610 DDE domain D8O08_014205 PF13005 zinc-finger binding domain of transposase IS66 D8O08_014205 PF13817 IS66 C-terminal element D8O08_014205 PF03050 Transposase IS66 family D8O08_014205 PF13007 Transposase C of IS166 homeodomain D8O08_014215 PF01636 Phosphotransferase enzyme family D8O08_014240 PF07091 Ribosomal RNA methyltransferase (FmrO) D8O08_014260 PF00809 Pterin binding enzyme D8O08_014265 PF00893 Small Multidrug Resistance protein D8O08_014270 PF13427 Domain of unknown function (DUF4111) D8O08_014270 PF01909 Nucleotidyltransferase domain D8O08_014275 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_014295 PF01636 Phosphotransferase enzyme family D8O08_014315 PF16671 Actin cross-linking domain D8O08_014315 PF04717 Type VI secretion system, phage-baseplate injector D8O08_014330 PF03180 NLPA lipoprotein D8O08_014335 PF05987 Bacterial protein of unknown function (DUF898) D8O08_014350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D8O08_014350 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_014365 PF01979 Amidohydrolase family D8O08_014370 PF00929 Exonuclease D8O08_014380 PF00593 TonB dependent receptor D8O08_014380 PF07715 TonB-dependent Receptor Plug Domain D8O08_014385 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_014385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D8O08_014390 PF00005 ABC transporter D8O08_014390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D8O08_014395 PF12911 N-terminal TM domain of oligopeptide transport permease C D8O08_014395 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_014400 PF00528 Binding-protein-dependent transport system inner membrane component D8O08_014405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D8O08_014410 PF01464 Transglycosylase SLT domain D8O08_014410 PF01476 LysM domain D8O08_014410 PF01464 Transglycosylase SLT domain D8O08_014410 PF01476 LysM domain D8O08_014415 PF00929 Exonuclease D8O08_014425 PF09297 NADH pyrophosphatase zinc ribbon domain D8O08_014425 PF00293 NUDIX domain D8O08_014435 PF04972 BON domain D8O08_014440 PF02021 Uncharacterised protein family UPF0102 D8O08_014445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D8O08_014455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_014455 PF03466 LysR substrate binding domain D8O08_014460 PF01810 LysE type translocator D8O08_014470 PF13411 MerR HTH family regulatory protein D8O08_014480 PF01494 FAD binding domain D8O08_014485 PF01494 FAD binding domain D8O08_014490 PF05195 Aminopeptidase P, N-terminal domain D8O08_014490 PF00557 Metallopeptidase family M24 D8O08_014525 PF00884 Sulfatase D8O08_014525 PF08019 Phosphoethanolamine transferase EptA/EptB D8O08_014570 PF01551 Peptidase family M23 D8O08_014570 PF08525 Opacity-associated protein A N-terminal motif D8O08_014570 PF01476 LysM domain D8O08_015020 PF00809 Pterin binding enzyme D8O08_015025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D8O08_015025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D8O08_015025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D8O08_015025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D8O08_015115 PF07690 Major Facilitator Superfamily D8O08_015120 PF02909 Tetracyclin repressor-like, C-terminal domain D8O08_015120 PF00440 Bacterial regulatory proteins, tetR family D8O08_015150 PF02796 Helix-turn-helix domain of resolvase D8O08_015150 PF00239 Resolvase, N terminal domain D8O08_015160 PF13610 DDE domain D8O08_015175 PF01636 Phosphotransferase enzyme family D8O08_015230 PF00893 Small Multidrug Resistance protein D8O08_015240 PF07690 Major Facilitator Superfamily D8O08_015250 PF00589 Phage integrase family D8O08_015250 PF13495 Phage integrase, N-terminal SAM-like domain D8O08_015255 PF13610 DDE domain D8O08_015315 PF08535 KorB domain D8O08_015315 PF06613 KorB C-terminal beta-barrel domain D8O08_015315 PF02195 ParB-like nuclease domain D8O08_015320 PF13614 AAA domain D8O08_015335 PF00809 Pterin binding enzyme D8O08_015340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D8O08_015340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D8O08_015340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D8O08_015340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D8O08_015360 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase D8O08_015365 PF01636 Phosphotransferase enzyme family D8O08_015375 PF13335 Magnesium chelatase, subunit ChlI C-terminal D8O08_015375 PF01078 Magnesium chelatase, subunit ChlI D8O08_015385 PF00543 Nitrogen regulatory protein P-II D8O08_015390 PF00909 Ammonium Transporter Family D8O08_015395 PF03477 ATP cone domain D8O08_015400 PF01872 RibD C-terminal domain D8O08_015400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D8O08_015410 PF00677 Lumazine binding domain D8O08_015430 PF02789 Cytosol aminopeptidase family, N-terminal domain D8O08_015430 PF00883 Cytosol aminopeptidase family, catalytic domain D8O08_015440 PF03739 Lipopolysaccharide export system permease LptF/LptG D8O08_015445 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D8O08_015445 PF01676 Metalloenzyme superfamily D8O08_015450 PF03572 Peptidase family S41 D8O08_015450 PF00595 PDZ domain D8O08_015455 PF00158 Sigma-54 interaction domain D8O08_015455 PF00072 Response regulator receiver domain D8O08_015455 PF02954 Bacterial regulatory protein, Fis family D8O08_015460 PF00512 His Kinase A (phospho-acceptor) domain D8O08_015460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_015465 PF00196 Bacterial regulatory proteins, luxR family D8O08_015465 PF00072 Response regulator receiver domain D8O08_015470 PF00768 D-alanyl-D-alanine carboxypeptidase D8O08_015475 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_015480 PF00742 Homoserine dehydrogenase D8O08_015480 PF01842 ACT domain D8O08_015480 PF03447 Homoserine dehydrogenase, NAD binding domain D8O08_015485 PF10411 Disulfide bond isomerase protein N-terminus D8O08_015485 PF13098 Thioredoxin-like domain D8O08_015490 PF02899 Phage integrase, N-terminal SAM-like domain D8O08_015490 PF00589 Phage integrase family D8O08_015500 PF02421 Ferrous iron transport protein B D8O08_015500 PF07664 Ferrous iron transport protein B C terminus D8O08_015500 PF07670 Nucleoside recognition D8O08_015510 PF02875 Mur ligase family, glutamate ligase domain D8O08_015510 PF08245 Mur ligase middle domain D8O08_015515 PF01098 Cell cycle protein D8O08_015520 PF00749 tRNA synthetases class I (E and Q), catalytic domain D8O08_015525 PF01258 Prokaryotic dksA/traR C4-type zinc finger D8O08_015530 PF00149 Calcineurin-like phosphoesterase D8O08_015535 PF00293 NUDIX domain D8O08_015540 PF13667 ThiC-associated domain D8O08_015540 PF01964 Radical SAM ThiC family D8O08_015555 PF00892 EamA-like transporter family D8O08_015560 PF02321 Outer membrane efflux protein D8O08_015565 PF01895 PhoU domain D8O08_015570 PF04362 Bacterial Fe(2+) trafficking D8O08_015575 PF00206 Lyase D8O08_015575 PF14698 Argininosuccinate lyase C-terminal D8O08_015580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_015580 PF07694 5TMR of 5TMR-LYT D8O08_015580 PF06580 Histidine kinase D8O08_015585 PF04397 LytTr DNA-binding domain D8O08_015585 PF00072 Response regulator receiver domain D8O08_015590 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D8O08_015590 PF03900 Porphobilinogen deaminase, C-terminal domain D8O08_015615 PF00816 H-NS histone family D8O08_015630 PF00263 Bacterial type II and III secretion system protein D8O08_015630 PF03958 Bacterial type II/III secretion system short domain D8O08_015635 PF12401 Protein of unknown function (DUF2662) D8O08_015635 PF00498 FHA domain D8O08_015640 PF13419 Haloacid dehalogenase-like hydrolase D8O08_015645 PF04715 Anthranilate synthase component I, N terminal region D8O08_015645 PF00425 chorismate binding enzyme D8O08_015670 PF00009 Elongation factor Tu GTP binding domain D8O08_015670 PF03144 Elongation factor Tu domain 2 D8O08_015670 PF03143 Elongation factor Tu C-terminal domain D8O08_015680 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D8O08_015685 PF02357 Transcription termination factor nusG D8O08_015685 PF00467 KOW motif D8O08_015690 PF00298 Ribosomal protein L11, RNA binding domain D8O08_015690 PF03946 Ribosomal protein L11, N-terminal domain D8O08_015695 PF00687 Ribosomal protein L1p/L10e family D8O08_015700 PF00466 Ribosomal protein L10 D8O08_015705 PF00542 Ribosomal protein L7/L12 C-terminal domain D8O08_015705 PF16320 Ribosomal protein L7/L12 dimerisation domain D8O08_015710 PF04561 RNA polymerase Rpb2, domain 2 D8O08_015710 PF04563 RNA polymerase beta subunit D8O08_015710 PF04560 RNA polymerase Rpb2, domain 7 D8O08_015710 PF04565 RNA polymerase Rpb2, domain 3 D8O08_015710 PF10385 RNA polymerase beta subunit external 1 domain D8O08_015710 PF00562 RNA polymerase Rpb2, domain 6 D8O08_015715 PF05000 RNA polymerase Rpb1, domain 4 D8O08_015715 PF04983 RNA polymerase Rpb1, domain 3 D8O08_015715 PF00623 RNA polymerase Rpb1, domain 2 D8O08_015715 PF04997 RNA polymerase Rpb1, domain 1 D8O08_015715 PF04998 RNA polymerase Rpb1, domain 5 D8O08_015735 PF00561 alpha/beta hydrolase fold D8O08_015740 PF03553 Na+/H+ antiporter family D8O08_015740 PF13726 Na+-H+ antiporter family D8O08_015755 PF00183 Hsp90 protein D8O08_015755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_015770 PF01323 DSBA-like thioredoxin domain D8O08_015780 PF09278 MerR, DNA binding D8O08_015780 PF00376 MerR family regulatory protein D8O08_015800 PF00108 Thiolase, N-terminal domain D8O08_015800 PF02803 Thiolase, C-terminal domain D8O08_015805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D8O08_015805 PF00378 Enoyl-CoA hydratase/isomerase D8O08_015805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D8O08_015830 PF08459 UvrC Helix-hairpin-helix N-terminal D8O08_015830 PF02151 UvrB/uvrC motif D8O08_015830 PF01541 GIY-YIG catalytic domain D8O08_015840 PF01066 CDP-alcohol phosphatidyltransferase D8O08_015845 PF02805 Metal binding domain of Ada D8O08_015845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D8O08_015845 PF12833 Helix-turn-helix domain D8O08_015845 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D8O08_015870 PF13533 Biotin-lipoyl like D8O08_015875 PF03652 Holliday junction resolvase D8O08_015880 PF02622 Uncharacterized ACR, COG1678 D8O08_015885 PF02463 RecF/RecN/SMC N terminal domain D8O08_015895 PF06865 Pyrimidine/purine nucleoside phosphorylase D8O08_015900 PF00588 SpoU rRNA Methylase family D8O08_015900 PF08032 RNA 2'-O ribose methyltransferase substrate binding D8O08_015910 PF01121 Dephospho-CoA kinase D8O08_015915 PF01478 Type IV leader peptidase family D8O08_015915 PF06750 Bacterial Peptidase A24 N-terminal domain D8O08_015920 PF00482 Type II secretion system (T2SS), protein F D8O08_015925 PF00437 Type II/IV secretion system protein D8O08_015925 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D8O08_015930 PF00121 Triosephosphate isomerase D8O08_015935 PF03840 Preprotein translocase SecG subunit D8O08_015955 PF02576 RimP N-terminal domain D8O08_015955 PF17384 RimP C-terminal SH3 domain D8O08_015960 PF00575 S1 RNA binding domain D8O08_015960 PF13184 NusA-like KH domain D8O08_015960 PF08529 NusA N-terminal domain D8O08_015965 PF11987 Translation-initiation factor 2 D8O08_015965 PF04760 Translation initiation factor IF-2, N-terminal region D8O08_015965 PF08364 Bacterial translation initiation factor IF-2 associated region D8O08_015965 PF00009 Elongation factor Tu GTP binding domain D8O08_015970 PF02033 Ribosome-binding factor A D8O08_015980 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D8O08_015990 PF00361 Proton-conducting membrane transporter D8O08_015995 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D8O08_016000 PF13244 Domain of unknown function (DUF4040) D8O08_016000 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D8O08_016000 PF00361 Proton-conducting membrane transporter D8O08_016000 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D8O08_016020 PF01494 FAD binding domain D8O08_016025 PF03109 ABC1 family D8O08_016035 PF01209 ubiE/COQ5 methyltransferase family D8O08_016045 PF03976 Polyphosphate kinase 2 (PPK2) D8O08_016055 PF17946 RecC C-terminal domain D8O08_016060 PF13361 UvrD-like helicase C-terminal domain D8O08_016060 PF00580 UvrD/REP helicase N-terminal domain D8O08_016060 PF12705 PD-(D/E)XK nuclease superfamily D8O08_016065 PF13538 UvrD-like helicase C-terminal domain D8O08_016075 PF00312 Ribosomal protein S15 D8O08_016080 PF00575 S1 RNA binding domain D8O08_016080 PF03725 3' exoribonuclease family, domain 2 D8O08_016080 PF01138 3' exoribonuclease family, domain 1 D8O08_016080 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D8O08_016080 PF00013 KH domain D8O08_016085 PF01544 CorA-like Mg2+ transporter protein D8O08_016095 PF00226 DnaJ domain D8O08_016095 PF01556 DnaJ C terminal domain D8O08_016105 PF01430 Hsp33 protein D8O08_016110 PF02254 TrkA-N domain D8O08_016110 PF00999 Sodium/hydrogen exchanger family D8O08_016115 PF17764 3′ DNA-binding domain (3′BD) D8O08_016115 PF18074 Primosomal protein N C-terminal domain D8O08_016115 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D8O08_016115 PF00270 DEAD/DEAH box helicase D8O08_016115 PF00271 Helicase conserved C-terminal domain D8O08_016120 PF00482 Type II secretion system (T2SS), protein F D8O08_016125 PF07963 Prokaryotic N-terminal methylation motif D8O08_016125 PF08334 Type II secretion system (T2SS), protein G D8O08_016135 PF01588 Putative tRNA binding domain D8O08_016140 PF00795 Carbon-nitrogen hydrolase D8O08_016145 PF00571 CBS domain D8O08_016145 PF03471 Transporter associated domain D8O08_016150 PF01206 Sulfurtransferase TusA D8O08_016165 PF01177 Asp/Glu/Hydantoin racemase D8O08_016175 PF00762 Ferrochelatase D8O08_016180 PF00753 Metallo-beta-lactamase superfamily D8O08_016185 PF03884 DNA gyrase inhibitor YacG D8O08_016205 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D8O08_016220 PF01197 Ribosomal protein L31 D8O08_016225 PF03109 ABC1 family D8O08_016230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_016230 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D8O08_016235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_016235 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D8O08_016235 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_016240 PF01554 MatE D8O08_016250 PF04055 Radical SAM superfamily D8O08_016250 PF06969 HemN C-terminal domain D8O08_016255 PF00106 short chain dehydrogenase D8O08_016260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_016260 PF03466 LysR substrate binding domain D8O08_016275 PF13193 AMP-binding enzyme C-terminal domain D8O08_016275 PF00501 AMP-binding enzyme D8O08_016280 PF10150 Ribonuclease E/G family D8O08_016280 PF00575 S1 RNA binding domain D8O08_016280 PF12111 Polyribonucleotide phosphorylase C terminal D8O08_016290 PF00849 RNA pseudouridylate synthase D8O08_016290 PF01479 S4 domain D8O08_016295 PF13419 Haloacid dehalogenase-like hydrolase D8O08_016300 PF08279 HTH domain D8O08_016300 PF13280 WYL domain D8O08_016305 PF02798 Glutathione S-transferase, N-terminal domain D8O08_016315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_016315 PF03466 LysR substrate binding domain D8O08_016320 PF12706 Beta-lactamase superfamily domain D8O08_016325 PF00141 Peroxidase D8O08_016330 PF05524 PEP-utilising enzyme, N-terminal D8O08_016330 PF02896 PEP-utilising enzyme, TIM barrel domain D8O08_016330 PF00391 PEP-utilising enzyme, mobile domain D8O08_016330 PF01590 GAF domain D8O08_016335 PF00293 NUDIX domain D8O08_016355 PF03466 LysR substrate binding domain D8O08_016355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_016365 PF00330 Aconitase family (aconitate hydratase) D8O08_016370 PF00694 Aconitase C-terminal domain D8O08_016380 PF00180 Isocitrate/isopropylmalate dehydrogenase D8O08_016395 PF01176 Translation initiation factor 1A / IF-1 D8O08_016405 PF01416 tRNA pseudouridine synthase D8O08_016425 PF02774 Semialdehyde dehydrogenase, dimerisation domain D8O08_016425 PF01118 Semialdehyde dehydrogenase, NAD binding domain D8O08_016435 PF00375 Sodium:dicarboxylate symporter family D8O08_016445 PF03279 Bacterial lipid A biosynthesis acyltransferase D8O08_016450 PF01810 LysE type translocator D8O08_016465 PF00107 Zinc-binding dehydrogenase D8O08_016465 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_016470 PF01638 HxlR-like helix-turn-helix D8O08_016480 PF08272 Topoisomerase I zinc-ribbon-like D8O08_016480 PF01131 DNA topoisomerase D8O08_016480 PF01396 Topoisomerase DNA binding C4 zinc finger D8O08_016480 PF01751 Toprim domain D8O08_016495 PF13361 UvrD-like helicase C-terminal domain D8O08_016495 PF00580 UvrD/REP helicase N-terminal domain D8O08_016500 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) D8O08_016520 PF00999 Sodium/hydrogen exchanger family D8O08_016520 PF02254 TrkA-N domain D8O08_016525 PF00471 Ribosomal protein L33 D8O08_016530 PF00830 Ribosomal L28 family D8O08_016535 PF00171 Aldehyde dehydrogenase family D8O08_016545 PF00551 Formyl transferase D8O08_016545 PF01842 ACT domain D8O08_016555 PF01618 MotA/TolQ/ExbB proton channel family D8O08_016565 PF01625 Peptide methionine sulfoxide reductase D8O08_016575 PF00186 Dihydrofolate reductase D8O08_016580 PF00303 Thymidylate synthase D8O08_016595 PF01790 Prolipoprotein diacylglyceryl transferase D8O08_016615 PF00902 Sec-independent protein translocase protein (TatC) D8O08_016620 PF02416 mttA/Hcf106 family D8O08_016625 PF02416 mttA/Hcf106 family D8O08_016635 PF01725 Ham1 family D8O08_016645 PF00561 alpha/beta hydrolase fold D8O08_016645 PF07021 Methionine biosynthesis protein MetW D8O08_016650 PF00561 alpha/beta hydrolase fold D8O08_016655 PF00682 HMGL-like D8O08_016655 PF08502 LeuA allosteric (dimerisation) domain D8O08_016660 PF13640 2OG-Fe(II) oxygenase superfamily D8O08_016660 PF18331 PKHD-type hydroxylase C-terminal domain D8O08_016670 PF05698 Bacterial trigger factor protein (TF) C-terminus D8O08_016670 PF05697 Bacterial trigger factor protein (TF) D8O08_016670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D8O08_016675 PF00574 Clp protease D8O08_016680 PF06689 ClpX C4-type zinc finger D8O08_016680 PF10431 C-terminal, D2-small domain, of ClpB protein D8O08_016680 PF07724 AAA domain (Cdc48 subfamily) D8O08_016695 PF05683 Fumarase C-terminus D8O08_016695 PF05681 Fumarate hydratase (Fumerase) D8O08_016700 PF07085 DRTGG domain D8O08_016700 PF01515 Phosphate acetyl/butaryl transferase D8O08_016705 PF00871 Acetokinase family D8O08_016710 PF00920 Dehydratase family D8O08_016715 PF01081 KDPG and KHG aldolase D8O08_016720 PF02447 GntP family permease D8O08_016725 PF01202 Shikimate kinase D8O08_016730 PF00171 Aldehyde dehydrogenase family D8O08_016735 PF00171 Aldehyde dehydrogenase family D8O08_016740 PF00561 alpha/beta hydrolase fold D8O08_016750 PF00933 Glycosyl hydrolase family 3 N terminal domain D8O08_016755 PF00595 PDZ domain D8O08_016755 PF17804 Tail specific protease N-terminal domain D8O08_016755 PF03572 Peptidase family S41 D8O08_016755 PF11818 C-terminal domain of tail specific protease (DUF3340) D8O08_016760 PF13439 Glycosyltransferase Family 4 D8O08_016760 PF00534 Glycosyl transferases group 1 D8O08_016765 PF01569 PAP2 superfamily D8O08_016770 PF04384 Iron-sulphur cluster assembly D8O08_016775 PF00334 Nucleoside diphosphate kinase D8O08_016780 PF04055 Radical SAM superfamily D8O08_016790 PF13464 Domain of unknown function (DUF4115) D8O08_016795 PF04551 GcpE protein D8O08_016800 PF03129 Anticodon binding domain D8O08_016800 PF13393 Histidyl-tRNA synthetase D8O08_016810 PF13360 PQQ-like domain D8O08_016815 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D8O08_016815 PF01926 50S ribosome-binding GTPase D8O08_016830 PF00550 Phosphopantetheine attachment site D8O08_016835 PF00550 Phosphopantetheine attachment site D8O08_016845 PF13193 AMP-binding enzyme C-terminal domain D8O08_016845 PF00501 AMP-binding enzyme D8O08_016860 PF00221 Aromatic amino acid lyase D8O08_016880 PF04820 Tryptophan halogenase D8O08_016890 PF00109 Beta-ketoacyl synthase, N-terminal domain D8O08_016890 PF02801 Beta-ketoacyl synthase, C-terminal domain D8O08_016905 PF02801 Beta-ketoacyl synthase, C-terminal domain D8O08_016905 PF00109 Beta-ketoacyl synthase, N-terminal domain D8O08_016920 PF02556 Preprotein translocase subunit SecB D8O08_016925 PF00462 Glutaredoxin D8O08_016935 PF03193 RsgA GTPase D8O08_016940 PF00929 Exonuclease D8O08_016955 PF02321 Outer membrane efflux protein D8O08_016960 PF12704 MacB-like periplasmic core domain D8O08_016960 PF02687 FtsX-like permease family D8O08_016960 PF00005 ABC transporter D8O08_016965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D8O08_016980 PF09334 tRNA synthetases class I (M) D8O08_016980 PF13603 Leucyl-tRNA synthetase, Domain 2 D8O08_016980 PF00133 tRNA synthetases class I (I, L, M and V) D8O08_016980 PF08264 Anticodon-binding domain of tRNA D8O08_016990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D8O08_016990 PF00205 Thiamine pyrophosphate enzyme, central domain D8O08_016990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D8O08_016995 PF10369 Small subunit of acetolactate synthase D8O08_017000 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D8O08_017000 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D8O08_017005 PF00563 EAL domain D8O08_017005 PF03707 Bacterial signalling protein N terminal repeat D8O08_017005 PF00990 Diguanylate cyclase, GGDEF domain D8O08_017030 PF00009 Elongation factor Tu GTP binding domain D8O08_017030 PF03144 Elongation factor Tu domain 2 D8O08_017030 PF16658 Class II release factor RF3, C-terminal domain D8O08_017045 PF01026 TatD related DNase D8O08_017050 PF00694 Aconitase C-terminal domain D8O08_017050 PF00330 Aconitase family (aconitate hydratase) D8O08_017060 PF00899 ThiF family D8O08_017070 PF03466 LysR substrate binding domain D8O08_017070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_017080 PF01207 Dihydrouridine synthase (Dus) D8O08_017085 PF07690 Major Facilitator Superfamily D8O08_017095 PF00892 EamA-like transporter family D8O08_017100 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D8O08_017100 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D8O08_017105 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D8O08_017110 PF02233 NAD(P) transhydrogenase beta subunit D8O08_017115 PF00106 short chain dehydrogenase D8O08_017125 PF01261 Xylose isomerase-like TIM barrel D8O08_017130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D8O08_017130 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D8O08_017135 PF00378 Enoyl-CoA hydratase/isomerase D8O08_017140 PF00672 HAMP domain D8O08_017140 PF01627 Hpt domain D8O08_017140 PF00512 His Kinase A (phospho-acceptor) domain D8O08_017140 PF00072 Response regulator receiver domain D8O08_017140 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D8O08_017140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_017145 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_017155 PF05958 tRNA (Uracil-5-)-methyltransferase D8O08_017160 PF02824 TGS domain D8O08_017160 PF04607 Region found in RelA / SpoT proteins D8O08_017160 PF13291 ACT domain D8O08_017170 PF03819 MazG nucleotide pyrophosphohydrolase domain D8O08_017180 PF12626 Polymerase A arginine-rich C-terminus D8O08_017180 PF01743 Poly A polymerase head domain D8O08_017180 PF12627 Probable RNA and SrmB- binding site of polymerase A D8O08_017185 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D8O08_017190 PF02548 Ketopantoate hydroxymethyltransferase D8O08_017195 PF02569 Pantoate-beta-alanine ligase D8O08_017200 PF03668 P-loop ATPase protein family D8O08_017205 PF00381 PTS HPr component phosphorylation site D8O08_017210 PF04751 Protein of unknown function (DUF615) D8O08_017215 PF13193 AMP-binding enzyme C-terminal domain D8O08_017215 PF00501 AMP-binding enzyme D8O08_017220 PF03129 Anticodon binding domain D8O08_017220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D8O08_017220 PF02824 TGS domain D8O08_017220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D8O08_017225 PF00707 Translation initiation factor IF-3, C-terminal domain D8O08_017225 PF05198 Translation initiation factor IF-3, N-terminal domain D8O08_017235 PF00043 Glutathione S-transferase, C-terminal domain D8O08_017235 PF02798 Glutathione S-transferase, N-terminal domain D8O08_017240 PF09335 SNARE associated Golgi protein D8O08_017245 PF07690 Major Facilitator Superfamily D8O08_017250 PF01632 Ribosomal protein L35 D8O08_017255 PF00453 Ribosomal protein L20 D8O08_017275 PF01409 tRNA synthetases class II core domain (F) D8O08_017275 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D8O08_017280 PF01588 Putative tRNA binding domain D8O08_017280 PF03483 B3/4 domain D8O08_017280 PF03484 tRNA synthetase B5 domain D8O08_017280 PF03147 Ferredoxin-fold anticodon binding domain D8O08_017280 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D8O08_017285 PF00216 Bacterial DNA-binding protein D8O08_017300 PF07497 Rho termination factor, RNA-binding domain D8O08_017300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D8O08_017300 PF07498 Rho termination factor, N-terminal domain D8O08_017305 PF00085 Thioredoxin D8O08_017310 PF02541 Ppx/GppA phosphatase family D8O08_017315 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D8O08_017320 PF09179 TilS substrate binding domain D8O08_017320 PF01171 PP-loop family D8O08_017320 PF11734 TilS substrate C-terminal domain D8O08_017325 PF03807 NADP oxidoreductase coenzyme F420-dependent D8O08_017325 PF14748 Pyrroline-5-carboxylate reductase dimerisation D8O08_017330 PF02325 YGGT family D8O08_017355 PF00437 Type II/IV secretion system protein D8O08_017360 PF02566 OsmC-like protein D8O08_017365 PF01047 MarR family D8O08_017375 PF00795 Carbon-nitrogen hydrolase D8O08_017420 PF04552 Sigma-54, DNA binding domain D8O08_017420 PF04963 Sigma-54 factor, core binding domain D8O08_017420 PF00309 Sigma-54 factor, Activator interacting domain (AID) D8O08_017425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D8O08_017430 PF01722 BolA-like protein D8O08_017435 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D8O08_017440 PF01634 ATP phosphoribosyltransferase D8O08_017445 PF00815 Histidinol dehydrogenase D8O08_017450 PF00155 Aminotransferase class I and II D8O08_017495 PF00293 NUDIX domain D8O08_017500 PF00132 Bacterial transferase hexapeptide (six repeats) D8O08_017505 PF00814 Glycoprotease family D8O08_017510 PF04445 Putative SAM-dependent methyltransferase D8O08_017520 PF00756 Putative esterase D8O08_017530 PF00834 Ribulose-phosphate 3 epimerase family D8O08_017545 PF00394 Multicopper oxidase D8O08_017545 PF07732 Multicopper oxidase D8O08_017545 PF07731 Multicopper oxidase D8O08_017550 PF05275 Copper resistance protein B precursor (CopB) D8O08_017560 PF00893 Small Multidrug Resistance protein D8O08_017565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D8O08_017565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D8O08_017570 PF01960 ArgJ family D8O08_017575 PF02445 Quinolinate synthetase A protein D8O08_017600 PF00962 Adenosine/AMP deaminase D8O08_017605 PF08240 Alcohol dehydrogenase GroES-like domain D8O08_017605 PF00107 Zinc-binding dehydrogenase D8O08_017615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D8O08_017615 PF02770 Acyl-CoA dehydrogenase, middle domain D8O08_017615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D8O08_017620 PF07690 Major Facilitator Superfamily D8O08_017625 PF02515 CoA-transferase family III D8O08_017640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_017640 PF03466 LysR substrate binding domain D8O08_017660 PF03466 LysR substrate binding domain D8O08_017660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_017670 PF07687 Peptidase dimerisation domain D8O08_017670 PF01546 Peptidase family M20/M25/M40 D8O08_017675 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term D8O08_017675 PF12833 Helix-turn-helix domain D8O08_017685 PF01810 LysE type translocator D8O08_017690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_017690 PF03466 LysR substrate binding domain D8O08_017700 PF08267 Cobalamin-independent synthase, N-terminal domain D8O08_017700 PF01717 Cobalamin-independent synthase, Catalytic domain D8O08_017705 PF01613 Flavin reductase like domain D8O08_017735 PF02567 Phenazine biosynthesis-like protein D8O08_017755 PF01011 PQQ enzyme repeat D8O08_017755 PF13360 PQQ-like domain D8O08_017835 PF00268 Ribonucleotide reductase, small chain D8O08_017845 PF00317 Ribonucleotide reductase, all-alpha domain D8O08_017845 PF02867 Ribonucleotide reductase, barrel domain D8O08_017845 PF03477 ATP cone domain D8O08_017855 PF00486 Transcriptional regulatory protein, C terminal D8O08_017855 PF00072 Response regulator receiver domain D8O08_017860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D8O08_017860 PF00512 His Kinase A (phospho-acceptor) domain D8O08_017860 PF00672 HAMP domain D8O08_017870 PF00990 Diguanylate cyclase, GGDEF domain D8O08_017870 PF17151 Periplasmic sensor domain D8O08_017875 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D8O08_017880 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D8O08_017885 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D8O08_017885 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D8O08_017895 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D8O08_017895 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D8O08_017895 PF10531 SLBB domain D8O08_017900 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D8O08_017900 PF00384 Molybdopterin oxidoreductase D8O08_017900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D8O08_017905 PF00146 NADH dehydrogenase D8O08_017910 PF12838 4Fe-4S dicluster domain D8O08_017915 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D8O08_017920 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D8O08_017930 PF00361 Proton-conducting membrane transporter D8O08_017935 PF00361 Proton-conducting membrane transporter D8O08_017945 PF00313 'Cold-shock' DNA-binding domain D8O08_017950 PF03466 LysR substrate binding domain D8O08_017950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_017955 PF00970 Oxidoreductase FAD-binding domain D8O08_017955 PF00175 Oxidoreductase NAD-binding domain D8O08_017985 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_017990 PF13533 Biotin-lipoyl like D8O08_018015 PF01588 Putative tRNA binding domain D8O08_018015 PF09334 tRNA synthetases class I (M) D8O08_018025 PF10609 NUBPL iron-transfer P-loop NTPase D8O08_018035 PF01048 Phosphorylase superfamily D8O08_018050 PF00692 dUTPase D8O08_018085 PF01207 Dihydrouridine synthase (Dus) D8O08_018095 PF00448 SRP54-type protein, GTPase domain D8O08_018095 PF02881 SRP54-type protein, helical bundle domain D8O08_018095 PF02978 Signal peptide binding domain D8O08_018100 PF03309 Type III pantothenate kinase D8O08_018110 PF01925 Sulfite exporter TauE/SafE D8O08_018120 PF06470 SMC proteins Flexible Hinge Domain D8O08_018120 PF02463 RecF/RecN/SMC N terminal domain D8O08_018130 PF00533 BRCA1 C Terminus (BRCT) domain D8O08_018130 PF12826 Helix-hairpin-helix motif D8O08_018130 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D8O08_018130 PF03120 NAD-dependent DNA ligase OB-fold domain D8O08_018130 PF01653 NAD-dependent DNA ligase adenylation domain D8O08_018135 PF00210 Ferritin-like domain D8O08_018140 PF07690 Major Facilitator Superfamily D8O08_018145 PF00982 Glycosyltransferase family 20 D8O08_018150 PF02358 Trehalose-phosphatase D8O08_018160 PF04055 Radical SAM superfamily D8O08_018160 PF00202 Aminotransferase class-III D8O08_018160 PF06968 Biotin and Thiamin Synthesis associated domain D8O08_018165 PF00155 Aminotransferase class I and II D8O08_018180 PF00849 RNA pseudouridylate synthase D8O08_018180 PF01479 S4 domain D8O08_018185 PF04079 Segregation and condensation complex subunit ScpB D8O08_018190 PF02616 Segregation and condensation protein ScpA D8O08_018195 PF01300 Telomere recombination D8O08_018200 PF04315 Elongation factor P hydroxylase D8O08_018205 PF02620 Large ribosomal RNA subunit accumulation protein YceD D8O08_018210 PF01783 Ribosomal L32p protein family D8O08_018215 PF00698 Acyl transferase domain D8O08_018225 PF00550 Phosphopantetheine attachment site D8O08_018230 PF01476 LysM domain D8O08_018230 PF04972 BON domain D8O08_018235 PF08543 Phosphomethylpyrimidine kinase D8O08_018235 PF03070 TENA/THI-4/PQQC family D8O08_018235 PF02581 Thiamine monophosphate synthase D8O08_018260 PF02261 Aspartate decarboxylase D8O08_018265 PF01195 Peptidyl-tRNA hydrolase D8O08_018270 PF01386 Ribosomal L25p family D8O08_018275 PF14572 Phosphoribosyl synthetase-associated domain D8O08_018275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D8O08_018300 PF08544 GHMP kinases C terminal D8O08_018300 PF00288 GHMP kinases N terminal domain D8O08_018305 PF03550 Outer membrane lipoprotein LolB D8O08_018315 PF01488 Shikimate / quinate 5-dehydrogenase D8O08_018315 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D8O08_018315 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D8O08_018320 PF08275 DNA primase catalytic core, N-terminal domain D8O08_018320 PF08278 DNA primase DnaG DnaB-binding D8O08_018320 PF10410 DnaB-helicase binding domain of primase D8O08_018320 PF01807 CHC2 zinc finger D8O08_018325 PF13525 Outer membrane lipoprotein D8O08_018330 PF01479 S4 domain D8O08_018330 PF00849 RNA pseudouridylate synthase D8O08_018340 PF03358 NADPH-dependent FMN reductase D8O08_018345 PF01668 SmpB protein D8O08_018350 PF01467 Cytidylyltransferase-like D8O08_018355 PF00037 4Fe-4S binding domain D8O08_018375 PF03466 LysR substrate binding domain D8O08_018375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_018380 PF00180 Isocitrate/isopropylmalate dehydrogenase D8O08_018385 PF02028 BCCT, betaine/carnitine/choline family transporter D8O08_018390 PF07859 alpha/beta hydrolase fold D8O08_018395 PF00355 Rieske [2Fe-2S] domain D8O08_018395 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D8O08_018400 PF00171 Aldehyde dehydrogenase family D8O08_018405 PF00175 Oxidoreductase NAD-binding domain D8O08_018405 PF00111 2Fe-2S iron-sulfur cluster binding domain D8O08_018405 PF00970 Oxidoreductase FAD-binding domain D8O08_018420 PF00795 Carbon-nitrogen hydrolase D8O08_018420 PF02540 NAD synthase D8O08_018430 PF05726 Pirin C-terminal cupin domain D8O08_018430 PF02678 Pirin D8O08_018440 PF02801 Beta-ketoacyl synthase, C-terminal domain D8O08_018440 PF00109 Beta-ketoacyl synthase, N-terminal domain D8O08_018450 PF00164 Ribosomal protein S12/S23 D8O08_018455 PF00177 Ribosomal protein S7p/S5e D8O08_018460 PF03144 Elongation factor Tu domain 2 D8O08_018460 PF00679 Elongation factor G C-terminus D8O08_018460 PF00009 Elongation factor Tu GTP binding domain D8O08_018460 PF03764 Elongation factor G, domain IV D8O08_018460 PF14492 Elongation Factor G, domain II D8O08_018465 PF03143 Elongation factor Tu C-terminal domain D8O08_018465 PF03144 Elongation factor Tu domain 2 D8O08_018465 PF00009 Elongation factor Tu GTP binding domain D8O08_018480 PF00583 Acetyltransferase (GNAT) family D8O08_018485 PF04376 Arginine-tRNA-protein transferase, N terminus D8O08_018485 PF04377 Arginine-tRNA-protein transferase, C terminus D8O08_018490 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D8O08_018495 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_018500 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D8O08_018500 PF09397 Ftsk gamma domain D8O08_018500 PF01580 FtsK/SpoIIIE family D8O08_018500 PF17854 FtsK alpha domain D8O08_018505 PF01810 LysE type translocator D8O08_018520 PF03776 Septum formation topological specificity factor MinE D8O08_018525 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D8O08_018540 PF01553 Acyltransferase D8O08_018545 PF13488 Glycine zipper D8O08_018545 PF00691 OmpA family D8O08_018550 PF00580 UvrD/REP helicase N-terminal domain D8O08_018550 PF13361 UvrD-like helicase C-terminal domain D8O08_018555 PF00692 dUTPase D8O08_018560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D8O08_018560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D8O08_018560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D8O08_018560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D8O08_018565 PF00696 Amino acid kinase family D8O08_018575 PF13230 Glutamine amidotransferases class-II D8O08_018580 PF01814 Hemerythrin HHE cation binding domain D8O08_018595 PF03658 RnfH family Ubiquitin D8O08_018600 PF04355 SmpA / OmlA family D8O08_018605 PF01475 Ferric uptake regulator family D8O08_018610 PF00437 Type II/IV secretion system protein D8O08_018615 PF00437 Type II/IV secretion system protein D8O08_018620 PF01168 Alanine racemase, N-terminal domain D8O08_018630 PF12320 Type 5 capsule protein repressor C-terminal domain D8O08_018630 PF00149 Calcineurin-like phosphoesterase D8O08_018650 PF01370 NAD dependent epimerase/dehydratase family D8O08_018650 PF08338 Domain of unknown function (DUF1731) D8O08_018655 PF01266 FAD dependent oxidoreductase D8O08_018660 PF00490 Delta-aminolevulinic acid dehydratase D8O08_018665 PF03061 Thioesterase superfamily D8O08_018670 PF13533 Biotin-lipoyl like D8O08_018675 PF07690 Major Facilitator Superfamily D8O08_018745 PF00929 Exonuclease D8O08_018825 PF00145 C-5 cytosine-specific DNA methylase D8O08_018835 PF01695 IstB-like ATP binding protein D8O08_018885 PF07007 Lysozyme inhibitor LprI D8O08_019035 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D8O08_019075 PF02767 DNA polymerase III beta subunit, central domain D8O08_019075 PF00712 DNA polymerase III beta subunit, N-terminal domain D8O08_019075 PF02768 DNA polymerase III beta subunit, C-terminal domain D8O08_019175 PF01026 TatD related DNase D8O08_019195 PF00083 Sugar (and other) transporter D8O08_019200 PF00701 Dihydrodipicolinate synthetase family D8O08_019210 PF08281 Sigma-70, region 4 D8O08_019210 PF04542 Sigma-70 region 2 D8O08_019240 PF01126 Heme oxygenase D8O08_019265 PF13520 Amino acid permease D8O08_019270 PF02574 Homocysteine S-methyltransferase D8O08_019280 PF06039 Malate:quinone oxidoreductase (Mqo) D8O08_019285 PF00732 GMC oxidoreductase D8O08_019285 PF05199 GMC oxidoreductase D8O08_019290 PF00171 Aldehyde dehydrogenase family D8O08_019295 PF13977 BetI-type transcriptional repressor, C-terminal D8O08_019295 PF00440 Bacterial regulatory proteins, tetR family D8O08_019300 PF02028 BCCT, betaine/carnitine/choline family transporter D8O08_019305 PF02028 BCCT, betaine/carnitine/choline family transporter D8O08_019315 PF03061 Thioesterase superfamily D8O08_019325 PF02492 CobW/HypB/UreG, nucleotide-binding domain D8O08_019325 PF07683 Cobalamin synthesis protein cobW C-terminal domain D8O08_019330 PF00375 Sodium:dicarboxylate symporter family D8O08_019335 PF07152 YaeQ protein D8O08_019340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D8O08_019345 PF14883 Hypothetical glycosyl hydrolase family 13 D8O08_019345 PF01522 Polysaccharide deacetylase D8O08_019350 PF00535 Glycosyl transferase family 2 D8O08_019360 PF00378 Enoyl-CoA hydratase/isomerase D8O08_019375 PF09339 IclR helix-turn-helix domain D8O08_019375 PF01614 Bacterial transcriptional regulator D8O08_019380 PF00355 Rieske [2Fe-2S] domain D8O08_019390 PF00355 Rieske [2Fe-2S] domain D8O08_019400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D8O08_019405 PF14759 Reductase C-terminal D8O08_019405 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_019410 PF07690 Major Facilitator Superfamily D8O08_019420 PF12697 Alpha/beta hydrolase family D8O08_019430 PF01958 Domain of unknown function DUF108 D8O08_019430 PF03447 Homoserine dehydrogenase, NAD binding domain D8O08_019435 PF00171 Aldehyde dehydrogenase family D8O08_019440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D8O08_019440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D8O08_019440 PF00205 Thiamine pyrophosphate enzyme, central domain D8O08_019450 PF07690 Major Facilitator Superfamily D8O08_019455 PF01327 Polypeptide deformylase D8O08_019460 PF04960 Glutaminase D8O08_019465 PF12833 Helix-turn-helix domain D8O08_019465 PF02311 AraC-like ligand binding domain D8O08_019470 PF07690 Major Facilitator Superfamily D8O08_019475 PF01263 Aldose 1-epimerase D8O08_019490 PF03466 LysR substrate binding domain D8O08_019490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_019500 PF07690 Major Facilitator Superfamily D8O08_019505 PF00456 Transketolase, thiamine diphosphate binding domain D8O08_019510 PF02779 Transketolase, pyrimidine binding domain D8O08_019510 PF02780 Transketolase, C-terminal domain D8O08_019515 PF02607 B12 binding domain D8O08_019515 PF00809 Pterin binding enzyme D8O08_019515 PF02574 Homocysteine S-methyltransferase D8O08_019515 PF02310 B12 binding domain D8O08_019515 PF02965 Vitamin B12 dependent methionine synthase, activation domain D8O08_019520 PF01384 Phosphate transporter family D8O08_019525 PF00291 Pyridoxal-phosphate dependent enzyme D8O08_019540 PF03781 Sulfatase-modifying factor enzyme 1 D8O08_019545 PF00884 Sulfatase D8O08_019555 PF01521 Iron-sulphur cluster biosynthesis D8O08_019555 PF01106 NifU-like domain D8O08_019560 PF07715 TonB-dependent Receptor Plug Domain D8O08_019560 PF00593 TonB dependent receptor D8O08_019570 PF00561 alpha/beta hydrolase fold D8O08_019575 PF00484 Carbonic anhydrase D8O08_019580 PF13472 GDSL-like Lipase/Acylhydrolase family D8O08_019585 PF00005 ABC transporter D8O08_019595 PF01694 Rhomboid family D8O08_019600 PF00912 Transglycosylase D8O08_019605 PF13090 Polyphosphate kinase C-terminal domain 2 D8O08_019605 PF17941 Polyphosphate kinase C-terminal domain 1 D8O08_019605 PF13089 Polyphosphate kinase N-terminal domain D8O08_019605 PF02503 Polyphosphate kinase middle domain D8O08_019615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_019615 PF03466 LysR substrate binding domain D8O08_019620 PF00561 alpha/beta hydrolase fold D8O08_019625 PF18113 Rubredoxin binding C-terminal domain D8O08_019625 PF07992 Pyridine nucleotide-disulphide oxidoreductase D8O08_019630 PF00301 Rubredoxin D8O08_019645 PF00152 tRNA synthetases class II (D, K and N) D8O08_019645 PF01336 OB-fold nucleic acid binding domain D8O08_019650 PF14052 Capsule assembly protein Wzi D8O08_019660 PF01507 Phosphoadenosine phosphosulfate reductase family D8O08_019665 PF00009 Elongation factor Tu GTP binding domain D8O08_019690 PF01595 Cyclin M transmembrane N-terminal domain D8O08_019690 PF03471 Transporter associated domain D8O08_019690 PF00571 CBS domain D8O08_019695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D8O08_019695 PF03466 LysR substrate binding domain D8O08_019700 PF00463 Isocitrate lyase family D8O08_019715 PF01774 UreD urease accessory protein D8O08_019720 PF00547 Urease, gamma subunit D8O08_019725 PF00699 Urease beta subunit D8O08_019735 PF05194 UreE urease accessory protein, C-terminal domain D8O08_019735 PF02814 UreE urease accessory protein, N-terminal domain D8O08_019740 PF01730 UreF D8O08_019745 PF02492 CobW/HypB/UreG, nucleotide-binding domain D8O08_019760 PF00905 Penicillin binding protein transpeptidase domain D8O08_019760 PF03717 Penicillin-binding Protein dimerisation domain D8O08_019775 PF05191 Adenylate kinase, active site lid D8O08_019785 PF00730 HhH-GPD superfamily base excision DNA repair protein D8O08_019785 PF00633 Helix-hairpin-helix motif D8O08_019785 PF10576 Iron-sulfur binding domain of endonuclease III D8O08_019790 PF04060 Putative Fe-S cluster D8O08_019795 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D8O08_019795 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D8O08_019805 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D8O08_019810 PF02590 Predicted SPOUT methyltransferase D8O08_019815 PF02190 ATP-dependent protease La (LON) substrate-binding domain D8O08_019815 PF05362 Lon protease (S16) C-terminal proteolytic domain D8O08_019815 PF00004 ATPase family associated with various cellular activities (AAA) D8O08_019820 PF03895 YadA-like membrane anchor domain D8O08_019820 PF13018 Extended Signal Peptide of Type V secretion system D8O08_019820 PF05662 Coiled stalk of trimeric autotransporter adhesin D8O08_019820 PF05658 Head domain of trimeric autotransporter adhesin D8O08_019830 PF01812 5-formyltetrahydrofolate cyclo-ligase family D8O08_020060 PF00589 Phage integrase family D8O08_020060 PF02899 Phage integrase, N-terminal SAM-like domain D8O08_020170 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D8O08_020170 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D8O08_020170 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D8O08_020170 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D8O08_020280 PF03389 MobA/MobL family D8O08_020285 PF01051 Initiator Replication protein D8O08_020300 PF05973 Phage derived protein Gp49-like (DUF891)