locus-tag class description FDN00_00010 PF01545 Cation efflux family FDN00_00015 PF00873 AcrB/AcrD/AcrF family FDN00_00020 PF00529 HlyD membrane-fusion protein of T1SS FDN00_00020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN00_00040 PF04191 Phospholipid methyltransferase FDN00_00065 PF00005 ABC transporter FDN00_00065 PF12848 ABC transporter FDN00_00070 PF01053 Cys/Met metabolism PLP-dependent enzyme FDN00_00075 PF00106 short chain dehydrogenase FDN00_00080 PF01740 STAS domain FDN00_00080 PF00916 Sulfate permease family FDN00_00085 PF16921 Tex protein YqgF-like domain FDN00_00085 PF09371 Tex-like protein N-terminal domain FDN00_00085 PF00575 S1 RNA binding domain FDN00_00085 PF17674 HHH domain FDN00_00090 PF00072 Response regulator receiver domain FDN00_00090 PF00486 Transcriptional regulatory protein, C terminal FDN00_00095 PF00512 His Kinase A (phospho-acceptor) domain FDN00_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_00095 PF00672 HAMP domain FDN00_00105 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FDN00_00105 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FDN00_00110 PF00583 Acetyltransferase (GNAT) family FDN00_00125 PF00475 Imidazoleglycerol-phosphate dehydratase FDN00_00130 PF00117 Glutamine amidotransferase class-I FDN00_00145 PF00977 Histidine biosynthesis protein FDN00_00160 PF03992 Antibiotic biosynthesis monooxygenase FDN00_00175 PF01636 Phosphotransferase enzyme family FDN00_00180 PF00977 Histidine biosynthesis protein FDN00_00195 PF00230 Major intrinsic protein FDN00_00220 PF02705 K+ potassium transporter FDN00_00240 PF02525 Flavodoxin-like fold FDN00_00250 PF01638 HxlR-like helix-turn-helix FDN00_00280 PF02311 AraC-like ligand binding domain FDN00_00280 PF12833 Helix-turn-helix domain FDN00_00285 PF00248 Aldo/keto reductase family FDN00_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_00305 PF03466 LysR substrate binding domain FDN00_00310 PF07690 Major Facilitator Superfamily FDN00_00330 PF01593 Flavin containing amine oxidoreductase FDN00_00335 PF05726 Pirin C-terminal cupin domain FDN00_00335 PF02678 Pirin FDN00_00340 PF00857 Isochorismatase family FDN00_00345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_00350 PF00171 Aldehyde dehydrogenase family FDN00_00355 PF00202 Aminotransferase class-III FDN00_00360 PF00392 Bacterial regulatory proteins, gntR family FDN00_00360 PF00155 Aminotransferase class I and II FDN00_00365 PF00324 Amino acid permease FDN00_00375 PF03591 AzlC protein FDN00_00385 PF00436 Single-strand binding protein family FDN00_00390 PF07690 Major Facilitator Superfamily FDN00_00400 PF08543 Phosphomethylpyrimidine kinase FDN00_00400 PF02581 Thiamine monophosphate synthase FDN00_00400 PF03070 TENA/THI-4/PQQC family FDN00_00405 PF06942 GlpM protein FDN00_00415 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_00415 PF00107 Zinc-binding dehydrogenase FDN00_00420 PF16925 Tetracyclin repressor-like, C-terminal domain FDN00_00420 PF00440 Bacterial regulatory proteins, tetR family FDN00_00425 PF17755 UvrA DNA-binding domain FDN00_00425 PF17760 UvrA interaction domain FDN00_00425 PF00005 ABC transporter FDN00_00435 PF17158 Membrane-associated sensor, integral membrane domain FDN00_00435 PF00990 Diguanylate cyclase, GGDEF domain FDN00_00445 PF02028 BCCT, betaine/carnitine/choline family transporter FDN00_00455 PF00474 Sodium:solute symporter family FDN00_00460 PF04341 Protein of unknown function, DUF485 FDN00_00465 PF00512 His Kinase A (phospho-acceptor) domain FDN00_00465 PF01627 Hpt domain FDN00_00465 PF00072 Response regulator receiver domain FDN00_00465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_00465 PF00672 HAMP domain FDN00_00475 PF00072 Response regulator receiver domain FDN00_00475 PF00196 Bacterial regulatory proteins, luxR family FDN00_00480 PF03358 NADPH-dependent FMN reductase FDN00_00485 PF00296 Luciferase-like monooxygenase FDN00_00490 PF00872 Transposase, Mutator family FDN00_00495 PF01037 Lrp/AsnC ligand binding domain FDN00_00500 PF00857 Isochorismatase family FDN00_00505 PF16177 Acetyl-coenzyme A synthetase N-terminus FDN00_00505 PF00501 AMP-binding enzyme FDN00_00505 PF13193 AMP-binding enzyme C-terminal domain FDN00_00515 PF00924 Mechanosensitive ion channel FDN00_00520 PF04452 RNA methyltransferase FDN00_00525 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FDN00_00530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN00_00550 PF17768 RecJ OB domain FDN00_00550 PF01368 DHH family FDN00_00550 PF02272 DHHA1 domain FDN00_00555 PF01243 Pyridoxamine 5'-phosphate oxidase FDN00_00555 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FDN00_00560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDN00_00560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDN00_00560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDN00_00560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDN00_00565 PF00478 IMP dehydrogenase / GMP reductase domain FDN00_00565 PF00571 CBS domain FDN00_00570 PF03692 Putative zinc- or iron-chelating domain FDN00_00575 PF00258 Flavodoxin FDN00_00575 PF01613 Flavin reductase like domain FDN00_00580 PF07715 TonB-dependent Receptor Plug Domain FDN00_00580 PF00593 TonB dependent receptor FDN00_00585 PF01169 Uncharacterized protein family UPF0016 FDN00_00595 PF02817 e3 binding domain FDN00_00595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDN00_00595 PF00364 Biotin-requiring enzyme FDN00_00600 PF17831 Pyruvate dehydrogenase E1 component middle domain FDN00_00600 PF00456 Transketolase, thiamine diphosphate binding domain FDN00_00605 PF01551 Peptidase family M23 FDN00_00615 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FDN00_00620 PF00091 Tubulin/FtsZ family, GTPase domain FDN00_00620 PF12327 FtsZ family, C-terminal domain FDN00_00625 PF02491 SHS2 domain inserted in FTSA FDN00_00630 PF03799 Cell division protein FtsQ FDN00_00630 PF08478 POTRA domain, FtsQ-type FDN00_00635 PF01820 D-ala D-ala ligase N-terminus FDN00_00635 PF07478 D-ala D-ala ligase C-terminus FDN00_00640 PF01225 Mur ligase family, catalytic domain FDN00_00640 PF02875 Mur ligase family, glutamate ligase domain FDN00_00640 PF08245 Mur ligase middle domain FDN00_00645 PF03033 Glycosyltransferase family 28 N-terminal domain FDN00_00645 PF04101 Glycosyltransferase family 28 C-terminal domain FDN00_00650 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FDN00_00650 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FDN00_00660 PF07715 TonB-dependent Receptor Plug Domain FDN00_00660 PF00593 TonB dependent receptor FDN00_00665 PF00156 Phosphoribosyl transferase domain FDN00_00670 PF03372 Endonuclease/Exonuclease/phosphatase family FDN00_00675 PF03960 ArsC family FDN00_00685 PF07859 alpha/beta hydrolase fold FDN00_00690 PF00990 Diguanylate cyclase, GGDEF domain FDN00_00690 PF07694 5TMR of 5TMR-LYT FDN00_00695 PF02683 Cytochrome C biogenesis protein transmembrane region FDN00_00695 PF11412 Disulphide bond corrector protein DsbC FDN00_00725 PF00576 HIUase/Transthyretin family FDN00_00730 PF00860 Permease family FDN00_00740 PF01494 FAD binding domain FDN00_00745 PF03561 Allantoicase repeat FDN00_00750 PF04115 Ureidoglycolate lyase FDN00_00755 PF00204 DNA gyrase B FDN00_00755 PF01751 Toprim domain FDN00_00755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_00755 PF00986 DNA gyrase B subunit, carboxyl terminus FDN00_00760 PF05728 Uncharacterised protein family (UPF0227) FDN00_00780 PF01471 Putative peptidoglycan binding domain FDN00_00780 PF01476 LysM domain FDN00_00780 PF01510 N-acetylmuramoyl-L-alanine amidase FDN00_00785 PF04717 Type VI secretion system, phage-baseplate injector FDN00_00790 PF02600 Disulfide bond formation protein DsbB FDN00_00795 PF04262 Glutamate-cysteine ligase FDN00_00810 PF04286 Protein of unknown function (DUF445) FDN00_00815 PF00155 Aminotransferase class I and II FDN00_00820 PF01554 MatE FDN00_00825 PF00106 short chain dehydrogenase FDN00_00835 PF00486 Transcriptional regulatory protein, C terminal FDN00_00835 PF00072 Response regulator receiver domain FDN00_00840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_00840 PF00512 His Kinase A (phospho-acceptor) domain FDN00_00840 PF00989 PAS fold FDN00_00840 PF11808 Phosphate regulon sensor protein PhoR FDN00_00860 PF03069 Acetamidase/Formamidase family FDN00_00865 PF02666 Phosphatidylserine decarboxylase FDN00_00870 PF00581 Rhodanese-like domain FDN00_00875 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FDN00_00875 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDN00_00880 PF02580 D-Tyr-tRNA(Tyr) deacylase FDN00_00910 PF00925 GTP cyclohydrolase II FDN00_00910 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDN00_00915 PF00885 6,7-dimethyl-8-ribityllumazine synthase FDN00_00920 PF01029 NusB family FDN00_00925 PF02769 AIR synthase related protein, C-terminal domain FDN00_00925 PF00586 AIR synthase related protein, N-terminal domain FDN00_00930 PF04608 Phosphatidylglycerophosphatase A FDN00_00935 PF12804 MobA-like NTP transferase domain FDN00_00935 PF14602 Hexapeptide repeat of succinyl-transferase FDN00_00935 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_00940 PF01380 SIS domain FDN00_00945 PF01177 Asp/Glu/Hydantoin racemase FDN00_00960 PF00491 Arginase family FDN00_00965 PF01979 Amidohydrolase family FDN00_00970 PF00324 Amino acid permease FDN00_00975 PF00221 Aromatic amino acid lyase FDN00_00980 PF01175 Urocanase Rossmann-like domain FDN00_00980 PF17391 Urocanase N-terminal domain FDN00_00980 PF17392 Urocanase C-terminal domain FDN00_00985 PF05962 HutD FDN00_00990 PF00392 Bacterial regulatory proteins, gntR family FDN00_00990 PF07702 UTRA domain FDN00_01000 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDN00_01000 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDN00_01010 PF00324 Amino acid permease FDN00_01020 PF02798 Glutathione S-transferase, N-terminal domain FDN00_01020 PF14497 Glutathione S-transferase, C-terminal domain FDN00_01025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDN00_01035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDN00_01045 PF01554 MatE FDN00_01050 PF01758 Sodium Bile acid symporter family FDN00_01055 PF00857 Isochorismatase family FDN00_01060 PF00701 Dihydrodipicolinate synthetase family FDN00_01070 PF01259 SAICAR synthetase FDN00_01080 PF01226 Formate/nitrite transporter FDN00_01085 PF12002 MgsA AAA+ ATPase C terminal FDN00_01085 PF00004 ATPase family associated with various cellular activities (AAA) FDN00_01085 PF16193 AAA C-terminal domain FDN00_01090 PF07995 Glucose / Sorbosone dehydrogenase FDN00_01095 PF03692 Putative zinc- or iron-chelating domain FDN00_01100 PF07043 Protein of unknown function (DUF1328) FDN00_01115 PF10576 Iron-sulfur binding domain of endonuclease III FDN00_01115 PF00633 Helix-hairpin-helix motif FDN00_01115 PF00730 HhH-GPD superfamily base excision DNA repair protein FDN00_01115 PF14815 NUDIX domain FDN00_01130 PF03352 Methyladenine glycosylase FDN00_01135 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_01135 PF00107 Zinc-binding dehydrogenase FDN00_01140 PF00155 Aminotransferase class I and II FDN00_01140 PF00392 Bacterial regulatory proteins, gntR family FDN00_01155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_01155 PF03466 LysR substrate binding domain FDN00_01160 PF00248 Aldo/keto reductase family FDN00_01165 PF07690 Major Facilitator Superfamily FDN00_01175 PF05173 Dihydrodipicolinate reductase, C-terminus FDN00_01175 PF01113 Dihydrodipicolinate reductase, N-terminus FDN00_01185 PF01556 DnaJ C terminal domain FDN00_01185 PF00226 DnaJ domain FDN00_01185 PF00684 DnaJ central domain FDN00_01195 PF00873 AcrB/AcrD/AcrF family FDN00_01200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN00_01205 PF00440 Bacterial regulatory proteins, tetR family FDN00_01205 PF08361 MAATS-type transcriptional repressor, C-terminal region FDN00_01210 PF00311 Phosphoenolpyruvate carboxylase FDN00_01215 PF00860 Permease family FDN00_01220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_01220 PF03466 LysR substrate binding domain FDN00_01235 PF00920 Dehydratase family FDN00_01240 PF02911 Formyl transferase, C-terminal domain FDN00_01240 PF00551 Formyl transferase FDN00_01245 PF01189 16S rRNA methyltransferase RsmB/F FDN00_01245 PF01029 NusB family FDN00_01255 PF00209 Sodium:neurotransmitter symporter family FDN00_01300 PF00579 tRNA synthetases class I (W and Y) FDN00_01305 PF03702 Anhydro-N-acetylmuramic acid kinase FDN00_01310 PF00561 alpha/beta hydrolase fold FDN00_01315 PF01521 Iron-sulphur cluster biosynthesis FDN00_01335 PF00005 ABC transporter FDN00_01335 PF12848 ABC transporter FDN00_01340 PF09335 SNARE associated Golgi protein FDN00_01350 PF18053 DNA gyrase B subunit insert domain FDN00_01350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_01350 PF01751 Toprim domain FDN00_01350 PF00986 DNA gyrase B subunit, carboxyl terminus FDN00_01350 PF00204 DNA gyrase B FDN00_01360 PF00712 DNA polymerase III beta subunit, N-terminal domain FDN00_01360 PF02767 DNA polymerase III beta subunit, central domain FDN00_01360 PF02768 DNA polymerase III beta subunit, C-terminal domain FDN00_01365 PF08299 Bacterial dnaA protein helix-turn-helix FDN00_01365 PF11638 DnaA N-terminal domain FDN00_01365 PF00308 Bacterial dnaA protein FDN00_01370 PF00468 Ribosomal protein L34 FDN00_01375 PF00825 Ribonuclease P FDN00_01380 PF01809 Putative membrane protein insertion efficiency factor FDN00_01385 PF02096 60Kd inner membrane protein FDN00_01385 PF14849 YidC periplasmic domain FDN00_01390 PF12631 MnmE helical domain FDN00_01390 PF10396 GTP-binding protein TrmE N-terminus FDN00_01390 PF01926 50S ribosome-binding GTPase FDN00_01395 PF02583 Metal-sensitive transcriptional repressor FDN00_01400 PF16916 Dimerisation domain of Zinc Transporter FDN00_01400 PF01545 Cation efflux family FDN00_01405 PF10411 Disulfide bond isomerase protein N-terminus FDN00_01405 PF13098 Thioredoxin-like domain FDN00_01415 PF00156 Phosphoribosyl transferase domain FDN00_01420 PF01979 Amidohydrolase family FDN00_01425 PF00355 Rieske [2Fe-2S] domain FDN00_01430 PF03738 Glutathionylspermidine synthase preATP-grasp FDN00_01440 PF03741 Integral membrane protein TerC family FDN00_01445 PF01569 PAP2 superfamily FDN00_01455 PF08245 Mur ligase middle domain FDN00_01455 PF01225 Mur ligase family, catalytic domain FDN00_01455 PF02875 Mur ligase family, glutamate ligase domain FDN00_01470 PF00731 AIR carboxylase FDN00_01475 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FDN00_01475 PF02222 ATP-grasp domain FDN00_01480 PF13406 Transglycosylase SLT domain FDN00_01500 PF00012 Hsp70 protein FDN00_01505 PF01025 GrpE FDN00_01530 PF07859 alpha/beta hydrolase fold FDN00_01535 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDN00_01575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN00_01580 PF01252 Signal peptidase (SPase) II FDN00_01585 PF00133 tRNA synthetases class I (I, L, M and V) FDN00_01585 PF08264 Anticodon-binding domain of tRNA FDN00_01585 PF06827 Zinc finger found in FPG and IleRS FDN00_01590 PF06574 FAD synthetase FDN00_01590 PF01687 Riboflavin kinase FDN00_01600 PF01048 Phosphorylase superfamily FDN00_01605 PF08362 YcdC-like protein, C-terminal region FDN00_01605 PF00440 Bacterial regulatory proteins, tetR family FDN00_01610 PF00005 ABC transporter FDN00_01615 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_01620 PF00296 Luciferase-like monooxygenase FDN00_01625 PF09084 NMT1/THI5 like FDN00_01630 PF09084 NMT1/THI5 like FDN00_01635 PF00583 Acetyltransferase (GNAT) family FDN00_01635 PF00696 Amino acid kinase family FDN00_01650 PF00106 short chain dehydrogenase FDN00_01655 PF13419 Haloacid dehalogenase-like hydrolase FDN00_01665 PF01323 DSBA-like thioredoxin domain FDN00_01670 PF08360 QacR-like protein, C-terminal region FDN00_01670 PF00440 Bacterial regulatory proteins, tetR family FDN00_01675 PF00440 Bacterial regulatory proteins, tetR family FDN00_01680 PF00175 Oxidoreductase NAD-binding domain FDN00_01685 PF00487 Fatty acid desaturase FDN00_01690 PF03725 3' exoribonuclease family, domain 2 FDN00_01690 PF01138 3' exoribonuclease family, domain 1 FDN00_01695 PF05506 Domain of unknown function (DUF756) FDN00_01695 PF04185 Phosphoesterase family FDN00_01705 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FDN00_01705 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FDN00_01710 PF01510 N-acetylmuramoyl-L-alanine amidase FDN00_01715 PF03023 Lipid II flippase MurJ FDN00_01720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN00_01720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDN00_01725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN00_01725 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDN00_01735 PF13807 G-rich domain on putative tyrosine kinase FDN00_01735 PF13614 AAA domain FDN00_01735 PF02706 Chain length determinant protein FDN00_01740 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDN00_01745 PF02563 Polysaccharide biosynthesis/export protein FDN00_01745 PF10531 SLBB domain FDN00_01745 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FDN00_01750 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDN00_01750 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDN00_01750 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDN00_01755 PF02719 Polysaccharide biosynthesis protein FDN00_01760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FDN00_01765 PF02350 UDP-N-acetylglucosamine 2-epimerase FDN00_01770 PF08666 SAF domain FDN00_01770 PF03102 NeuB family FDN00_01780 PF00483 Nucleotidyl transferase FDN00_01785 PF02348 Cytidylyltransferase FDN00_01820 PF13936 Helix-turn-helix domain FDN00_01820 PF00665 Integrase core domain FDN00_01835 PF02719 Polysaccharide biosynthesis protein FDN00_01835 PF08485 Polysaccharide biosynthesis protein C-terminal FDN00_01840 PF01370 NAD dependent epimerase/dehydratase family FDN00_01845 PF02350 UDP-N-acetylglucosamine 2-epimerase FDN00_01850 PF13579 Glycosyl transferase 4-like domain FDN00_01855 PF01370 NAD dependent epimerase/dehydratase family FDN00_01860 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FDN00_01860 PF00953 Glycosyl transferase family 4 FDN00_01865 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_01865 PF17836 PglD N-terminal domain FDN00_01870 PF02719 Polysaccharide biosynthesis protein FDN00_01875 PF00483 Nucleotidyl transferase FDN00_01880 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDN00_01880 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDN00_01880 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDN00_01885 PF00342 Phosphoglucose isomerase FDN00_01890 PF16363 GDP-mannose 4,6 dehydratase FDN00_01895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDN00_01895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDN00_01895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDN00_01895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDN00_01900 PF02652 L-lactate permease FDN00_01905 PF07729 FCD domain FDN00_01905 PF00392 Bacterial regulatory proteins, gntR family FDN00_01910 PF01070 FMN-dependent dehydrogenase FDN00_01915 PF09330 D-lactate dehydrogenase, membrane binding FDN00_01915 PF01565 FAD binding domain FDN00_01920 PF00155 Aminotransferase class I and II FDN00_01925 PF00392 Bacterial regulatory proteins, gntR family FDN00_01925 PF07729 FCD domain FDN00_01935 PF00285 Citrate synthase, C-terminal domain FDN00_01940 PF00330 Aconitase family (aconitate hydratase) FDN00_01940 PF00694 Aconitase C-terminal domain FDN00_01990 PF00849 RNA pseudouridylate synthase FDN00_02005 PF07715 TonB-dependent Receptor Plug Domain FDN00_02005 PF00593 TonB dependent receptor FDN00_02015 PF01037 Lrp/AsnC ligand binding domain FDN00_02020 PF01266 FAD dependent oxidoreductase FDN00_02025 PF00842 Alanine racemase, C-terminal domain FDN00_02025 PF01168 Alanine racemase, N-terminal domain FDN00_02030 PF01042 Endoribonuclease L-PSP FDN00_02035 PF00324 Amino acid permease FDN00_02040 PF00324 Amino acid permease FDN00_02050 PF00171 Aldehyde dehydrogenase family FDN00_02055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDN00_02055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDN00_02070 PF00665 Integrase core domain FDN00_02125 PF00905 Penicillin binding protein transpeptidase domain FDN00_02145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_02145 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_02145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_02150 PF00378 Enoyl-CoA hydratase/isomerase FDN00_02155 PF00378 Enoyl-CoA hydratase/isomerase FDN00_02160 PF00083 Sugar (and other) transporter FDN00_02160 PF07690 Major Facilitator Superfamily FDN00_02165 PF00765 Autoinducer synthase FDN00_02175 PF03472 Autoinducer binding domain FDN00_02175 PF00196 Bacterial regulatory proteins, luxR family FDN00_02180 PF00501 AMP-binding enzyme FDN00_02185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_02185 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_02185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_02190 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN00_02190 PF14765 Polyketide synthase dehydratase FDN00_02190 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN00_02190 PF08242 Methyltransferase domain FDN00_02190 PF00550 Phosphopantetheine attachment site FDN00_02190 PF16197 Ketoacyl-synthetase C-terminal extension FDN00_02190 PF00975 Thioesterase domain FDN00_02195 PF00668 Condensation domain FDN00_02195 PF00550 Phosphopantetheine attachment site FDN00_02195 PF00501 AMP-binding enzyme FDN00_02195 PF13193 AMP-binding enzyme C-terminal domain FDN00_02195 PF00975 Thioesterase domain FDN00_02210 PF12697 Alpha/beta hydrolase family FDN00_02215 PF01648 4'-phosphopantetheinyl transferase superfamily FDN00_02225 PF01722 BolA-like protein FDN00_02235 PF13614 AAA domain FDN00_02250 PF09335 SNARE associated Golgi protein FDN00_02255 PF07681 DoxX FDN00_02260 PF04286 Protein of unknown function (DUF445) FDN00_02265 PF00958 GMP synthase C terminal domain FDN00_02265 PF00117 Glutamine amidotransferase class-I FDN00_02265 PF02540 NAD synthase FDN00_02270 PF01909 Nucleotidyltransferase domain FDN00_02270 PF13427 Domain of unknown function (DUF4111) FDN00_02275 PF03551 Transcriptional regulator PadR-like family FDN00_02285 PF05726 Pirin C-terminal cupin domain FDN00_02285 PF02678 Pirin FDN00_02305 PF03485 Arginyl tRNA synthetase N terminal domain FDN00_02305 PF05746 DALR anticodon binding domain FDN00_02305 PF00750 tRNA synthetases class I (R) FDN00_02310 PF00390 Malic enzyme, N-terminal domain FDN00_02310 PF03949 Malic enzyme, NAD binding domain FDN00_02315 PF04261 Dyp-type peroxidase family FDN00_02320 PF01810 LysE type translocator FDN00_02325 PF00950 ABC 3 transport family FDN00_02330 PF00005 ABC transporter FDN00_02350 PF00119 ATP synthase A chain FDN00_02355 PF00137 ATP synthase subunit C FDN00_02360 PF00430 ATP synthase B/B' CF(0) FDN00_02365 PF00213 ATP synthase delta (OSCP) subunit FDN00_02370 PF00306 ATP synthase alpha/beta chain, C terminal domain FDN00_02370 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDN00_02370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDN00_02375 PF00231 ATP synthase FDN00_02380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDN00_02380 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDN00_02385 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FDN00_02395 PF00255 Glutathione peroxidase FDN00_02405 PF07690 Major Facilitator Superfamily FDN00_02410 PF00440 Bacterial regulatory proteins, tetR family FDN00_02415 PF00892 EamA-like transporter family FDN00_02420 PF01300 Telomere recombination FDN00_02425 PF02481 DNA recombination-mediator protein A FDN00_02425 PF17782 DprA winged helix domain FDN00_02435 PF01327 Polypeptide deformylase FDN00_02460 PF00440 Bacterial regulatory proteins, tetR family FDN00_02495 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_02505 PF03358 NADPH-dependent FMN reductase FDN00_02525 PF08497 Radical SAM N-terminal FDN00_02525 PF04055 Radical SAM superfamily FDN00_02525 PF11842 Domain of unknown function (DUF3362) FDN00_02540 PF11798 IMS family HHH motif FDN00_02540 PF11799 impB/mucB/samB family C-terminal domain FDN00_02540 PF00817 impB/mucB/samB family FDN00_02550 PF07690 Major Facilitator Superfamily FDN00_02555 PF03641 Possible lysine decarboxylase FDN00_02560 PF03741 Integral membrane protein TerC family FDN00_02560 PF03471 Transporter associated domain FDN00_02565 PF02810 SEC-C motif FDN00_02570 PF03458 UPF0126 domain FDN00_02575 PF07690 Major Facilitator Superfamily FDN00_02580 PF00521 DNA gyrase/topoisomerase IV, subunit A FDN00_02580 PF03989 DNA gyrase C-terminal domain, beta-propeller FDN00_02585 PF00501 AMP-binding enzyme FDN00_02585 PF13193 AMP-binding enzyme C-terminal domain FDN00_02600 PF00719 Inorganic pyrophosphatase FDN00_02605 PF03573 outer membrane porin, OprD family FDN00_02615 PF00701 Dihydrodipicolinate synthetase family FDN00_02625 PF00392 Bacterial regulatory proteins, gntR family FDN00_02625 PF00155 Aminotransferase class I and II FDN00_02630 PF01078 Magnesium chelatase, subunit ChlI FDN00_02630 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDN00_02640 PF00665 Integrase core domain FDN00_02660 PF00582 Universal stress protein family FDN00_02665 PF00916 Sulfate permease family FDN00_02665 PF01740 STAS domain FDN00_02675 PF07690 Major Facilitator Superfamily FDN00_02680 PF00440 Bacterial regulatory proteins, tetR family FDN00_02680 PF02909 Tetracyclin repressor-like, C-terminal domain FDN00_02705 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase FDN00_02710 PF01636 Phosphotransferase enzyme family FDN00_02720 PF01078 Magnesium chelatase, subunit ChlI FDN00_02720 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDN00_02730 PF00543 Nitrogen regulatory protein P-II FDN00_02735 PF00909 Ammonium Transporter Family FDN00_02740 PF03477 ATP cone domain FDN00_02745 PF01872 RibD C-terminal domain FDN00_02745 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDN00_02755 PF00677 Lumazine binding domain FDN00_02775 PF00883 Cytosol aminopeptidase family, catalytic domain FDN00_02775 PF02789 Cytosol aminopeptidase family, N-terminal domain FDN00_02785 PF03739 Lipopolysaccharide export system permease LptF/LptG FDN00_02790 PF01676 Metalloenzyme superfamily FDN00_02790 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FDN00_02795 PF03572 Peptidase family S41 FDN00_02795 PF00595 PDZ domain FDN00_02800 PF02954 Bacterial regulatory protein, Fis family FDN00_02800 PF00072 Response regulator receiver domain FDN00_02800 PF00158 Sigma-54 interaction domain FDN00_02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_02805 PF00512 His Kinase A (phospho-acceptor) domain FDN00_02810 PF00072 Response regulator receiver domain FDN00_02810 PF00196 Bacterial regulatory proteins, luxR family FDN00_02815 PF00768 D-alanyl-D-alanine carboxypeptidase FDN00_02820 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_02825 PF03447 Homoserine dehydrogenase, NAD binding domain FDN00_02825 PF00742 Homoserine dehydrogenase FDN00_02825 PF01842 ACT domain FDN00_02830 PF13098 Thioredoxin-like domain FDN00_02830 PF10411 Disulfide bond isomerase protein N-terminus FDN00_02835 PF00589 Phage integrase family FDN00_02835 PF02899 Phage integrase, N-terminal SAM-like domain FDN00_02845 PF07664 Ferrous iron transport protein B C terminus FDN00_02845 PF02421 Ferrous iron transport protein B FDN00_02845 PF07670 Nucleoside recognition FDN00_02855 PF08245 Mur ligase middle domain FDN00_02855 PF02875 Mur ligase family, glutamate ligase domain FDN00_02860 PF01098 Cell cycle protein FDN00_02865 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDN00_02870 PF01258 Prokaryotic dksA/traR C4-type zinc finger FDN00_02875 PF00149 Calcineurin-like phosphoesterase FDN00_02880 PF00293 NUDIX domain FDN00_02885 PF01964 Radical SAM ThiC family FDN00_02885 PF13667 ThiC-associated domain FDN00_02900 PF00892 EamA-like transporter family FDN00_02905 PF02321 Outer membrane efflux protein FDN00_02910 PF01895 PhoU domain FDN00_02915 PF04362 Bacterial Fe(2+) trafficking FDN00_02920 PF00206 Lyase FDN00_02920 PF14698 Argininosuccinate lyase C-terminal FDN00_02925 PF07694 5TMR of 5TMR-LYT FDN00_02925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_02925 PF06580 Histidine kinase FDN00_02930 PF04397 LytTr DNA-binding domain FDN00_02930 PF00072 Response regulator receiver domain FDN00_02935 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FDN00_02935 PF03900 Porphobilinogen deaminase, C-terminal domain FDN00_02960 PF00816 H-NS histone family FDN00_02975 PF00263 Bacterial type II and III secretion system protein FDN00_02975 PF03958 Bacterial type II/III secretion system short domain FDN00_02980 PF00498 FHA domain FDN00_02980 PF12401 Protein of unknown function (DUF2662) FDN00_02985 PF13419 Haloacid dehalogenase-like hydrolase FDN00_02990 PF00425 chorismate binding enzyme FDN00_02990 PF04715 Anthranilate synthase component I, N terminal region FDN00_03015 PF03144 Elongation factor Tu domain 2 FDN00_03015 PF00009 Elongation factor Tu GTP binding domain FDN00_03015 PF03143 Elongation factor Tu C-terminal domain FDN00_03025 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FDN00_03030 PF00467 KOW motif FDN00_03030 PF02357 Transcription termination factor nusG FDN00_03035 PF03946 Ribosomal protein L11, N-terminal domain FDN00_03035 PF00298 Ribosomal protein L11, RNA binding domain FDN00_03040 PF00687 Ribosomal protein L1p/L10e family FDN00_03045 PF00466 Ribosomal protein L10 FDN00_03050 PF16320 Ribosomal protein L7/L12 dimerisation domain FDN00_03050 PF00542 Ribosomal protein L7/L12 C-terminal domain FDN00_03055 PF04560 RNA polymerase Rpb2, domain 7 FDN00_03055 PF00562 RNA polymerase Rpb2, domain 6 FDN00_03055 PF04563 RNA polymerase beta subunit FDN00_03055 PF10385 RNA polymerase beta subunit external 1 domain FDN00_03055 PF04565 RNA polymerase Rpb2, domain 3 FDN00_03055 PF04561 RNA polymerase Rpb2, domain 2 FDN00_03060 PF00623 RNA polymerase Rpb1, domain 2 FDN00_03060 PF04998 RNA polymerase Rpb1, domain 5 FDN00_03060 PF05000 RNA polymerase Rpb1, domain 4 FDN00_03060 PF04997 RNA polymerase Rpb1, domain 1 FDN00_03060 PF04983 RNA polymerase Rpb1, domain 3 FDN00_03080 PF00561 alpha/beta hydrolase fold FDN00_03085 PF13726 Na+-H+ antiporter family FDN00_03085 PF03553 Na+/H+ antiporter family FDN00_03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_03100 PF00183 Hsp90 protein FDN00_03115 PF01323 DSBA-like thioredoxin domain FDN00_03125 PF00376 MerR family regulatory protein FDN00_03125 PF09278 MerR, DNA binding FDN00_03145 PF02803 Thiolase, C-terminal domain FDN00_03145 PF00108 Thiolase, N-terminal domain FDN00_03150 PF00378 Enoyl-CoA hydratase/isomerase FDN00_03150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN00_03150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN00_03175 PF01541 GIY-YIG catalytic domain FDN00_03175 PF02151 UvrB/uvrC motif FDN00_03175 PF08459 UvrC Helix-hairpin-helix N-terminal FDN00_03185 PF01066 CDP-alcohol phosphatidyltransferase FDN00_03190 PF12833 Helix-turn-helix domain FDN00_03190 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDN00_03190 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDN00_03190 PF02805 Metal binding domain of Ada FDN00_03215 PF13533 Biotin-lipoyl like FDN00_03220 PF03652 Holliday junction resolvase FDN00_03225 PF02622 Uncharacterized ACR, COG1678 FDN00_03230 PF02463 RecF/RecN/SMC N terminal domain FDN00_03240 PF06865 Pyrimidine/purine nucleoside phosphorylase FDN00_03245 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDN00_03245 PF00588 SpoU rRNA Methylase family FDN00_03255 PF01121 Dephospho-CoA kinase FDN00_03260 PF06750 Bacterial Peptidase A24 N-terminal domain FDN00_03260 PF01478 Type IV leader peptidase family FDN00_03265 PF00482 Type II secretion system (T2SS), protein F FDN00_03270 PF00437 Type II/IV secretion system protein FDN00_03270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDN00_03275 PF00121 Triosephosphate isomerase FDN00_03280 PF03840 Preprotein translocase SecG subunit FDN00_03295 PF17384 RimP C-terminal SH3 domain FDN00_03295 PF02576 RimP N-terminal domain FDN00_03305 PF08364 Bacterial translation initiation factor IF-2 associated region FDN00_03305 PF04760 Translation initiation factor IF-2, N-terminal region FDN00_03305 PF00009 Elongation factor Tu GTP binding domain FDN00_03305 PF11987 Translation-initiation factor 2 FDN00_03310 PF02033 Ribosome-binding factor A FDN00_03320 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FDN00_03330 PF00361 Proton-conducting membrane transporter FDN00_03335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDN00_03340 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDN00_03340 PF00361 Proton-conducting membrane transporter FDN00_03340 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FDN00_03340 PF13244 Domain of unknown function (DUF4040) FDN00_03355 PF01502 Phosphoribosyl-AMP cyclohydrolase FDN00_03360 PF01494 FAD binding domain FDN00_03365 PF03109 ABC1 family FDN00_03375 PF01209 ubiE/COQ5 methyltransferase family FDN00_03385 PF03976 Polyphosphate kinase 2 (PPK2) FDN00_03395 PF17946 RecC C-terminal domain FDN00_03400 PF00580 UvrD/REP helicase N-terminal domain FDN00_03400 PF12705 PD-(D/E)XK nuclease superfamily FDN00_03400 PF13361 UvrD-like helicase C-terminal domain FDN00_03405 PF13538 UvrD-like helicase C-terminal domain FDN00_03415 PF00312 Ribosomal protein S15 FDN00_03420 PF00575 S1 RNA binding domain FDN00_03420 PF03725 3' exoribonuclease family, domain 2 FDN00_03420 PF01138 3' exoribonuclease family, domain 1 FDN00_03420 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FDN00_03420 PF00013 KH domain FDN00_03425 PF01544 CorA-like Mg2+ transporter protein FDN00_03435 PF00226 DnaJ domain FDN00_03435 PF01556 DnaJ C terminal domain FDN00_03445 PF01430 Hsp33 protein FDN00_03450 PF02254 TrkA-N domain FDN00_03450 PF00999 Sodium/hydrogen exchanger family FDN00_03455 PF00270 DEAD/DEAH box helicase FDN00_03455 PF17764 3′ DNA-binding domain (3′BD) FDN00_03455 PF18074 Primosomal protein N C-terminal domain FDN00_03455 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FDN00_03455 PF00271 Helicase conserved C-terminal domain FDN00_03460 PF00482 Type II secretion system (T2SS), protein F FDN00_03465 PF07963 Prokaryotic N-terminal methylation motif FDN00_03465 PF08334 Type II secretion system (T2SS), protein G FDN00_03475 PF01588 Putative tRNA binding domain FDN00_03480 PF00795 Carbon-nitrogen hydrolase FDN00_03485 PF03471 Transporter associated domain FDN00_03485 PF00571 CBS domain FDN00_03490 PF01206 Sulfurtransferase TusA FDN00_03505 PF01177 Asp/Glu/Hydantoin racemase FDN00_03515 PF00762 Ferrochelatase FDN00_03520 PF00753 Metallo-beta-lactamase superfamily FDN00_03525 PF03884 DNA gyrase inhibitor YacG FDN00_03545 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FDN00_03560 PF01197 Ribosomal protein L31 FDN00_03565 PF03109 ABC1 family FDN00_03570 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN00_03570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_03575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_03575 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_03575 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN00_03580 PF01554 MatE FDN00_03590 PF04055 Radical SAM superfamily FDN00_03590 PF06969 HemN C-terminal domain FDN00_03595 PF00106 short chain dehydrogenase FDN00_03600 PF03466 LysR substrate binding domain FDN00_03600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_03610 PF13193 AMP-binding enzyme C-terminal domain FDN00_03610 PF00501 AMP-binding enzyme FDN00_03615 PF00575 S1 RNA binding domain FDN00_03615 PF12111 Polyribonucleotide phosphorylase C terminal FDN00_03615 PF10150 Ribonuclease E/G family FDN00_03625 PF01479 S4 domain FDN00_03625 PF00849 RNA pseudouridylate synthase FDN00_03630 PF13419 Haloacid dehalogenase-like hydrolase FDN00_03635 PF08279 HTH domain FDN00_03635 PF13280 WYL domain FDN00_03640 PF02798 Glutathione S-transferase, N-terminal domain FDN00_03650 PF03466 LysR substrate binding domain FDN00_03650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_03655 PF12706 Beta-lactamase superfamily domain FDN00_03660 PF00141 Peroxidase FDN00_03670 PF00293 NUDIX domain FDN00_03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_03690 PF03466 LysR substrate binding domain FDN00_03700 PF00330 Aconitase family (aconitate hydratase) FDN00_03705 PF00694 Aconitase C-terminal domain FDN00_03715 PF00180 Isocitrate/isopropylmalate dehydrogenase FDN00_03730 PF01176 Translation initiation factor 1A / IF-1 FDN00_03740 PF01416 tRNA pseudouridine synthase FDN00_03760 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDN00_03760 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDN00_03770 PF00375 Sodium:dicarboxylate symporter family FDN00_03780 PF03279 Bacterial lipid A biosynthesis acyltransferase FDN00_03785 PF01810 LysE type translocator FDN00_03800 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_03800 PF00107 Zinc-binding dehydrogenase FDN00_03805 PF01638 HxlR-like helix-turn-helix FDN00_03815 PF01396 Topoisomerase DNA binding C4 zinc finger FDN00_03815 PF01751 Toprim domain FDN00_03815 PF01131 DNA topoisomerase FDN00_03815 PF08272 Topoisomerase I zinc-ribbon-like FDN00_03830 PF13361 UvrD-like helicase C-terminal domain FDN00_03830 PF00580 UvrD/REP helicase N-terminal domain FDN00_03835 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FDN00_03855 PF00999 Sodium/hydrogen exchanger family FDN00_03855 PF02254 TrkA-N domain FDN00_03860 PF00471 Ribosomal protein L33 FDN00_03865 PF00830 Ribosomal L28 family FDN00_03870 PF00171 Aldehyde dehydrogenase family FDN00_03880 PF01842 ACT domain FDN00_03880 PF00551 Formyl transferase FDN00_03890 PF01618 MotA/TolQ/ExbB proton channel family FDN00_03900 PF01625 Peptide methionine sulfoxide reductase FDN00_03910 PF00186 Dihydrofolate reductase FDN00_03915 PF00303 Thymidylate synthase FDN00_03930 PF01790 Prolipoprotein diacylglyceryl transferase FDN00_03950 PF00902 Sec-independent protein translocase protein (TatC) FDN00_03955 PF02416 mttA/Hcf106 family FDN00_03960 PF02416 mttA/Hcf106 family FDN00_03970 PF01725 Ham1 family FDN00_03980 PF07021 Methionine biosynthesis protein MetW FDN00_03980 PF00561 alpha/beta hydrolase fold FDN00_03985 PF00561 alpha/beta hydrolase fold FDN00_03990 PF08502 LeuA allosteric (dimerisation) domain FDN00_03990 PF00682 HMGL-like FDN00_03995 PF18331 PKHD-type hydroxylase C-terminal domain FDN00_03995 PF13640 2OG-Fe(II) oxygenase superfamily FDN00_04000 PF07715 TonB-dependent Receptor Plug Domain FDN00_04000 PF00593 TonB dependent receptor FDN00_04005 PF05697 Bacterial trigger factor protein (TF) FDN00_04005 PF05698 Bacterial trigger factor protein (TF) C-terminus FDN00_04005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN00_04010 PF00574 Clp protease FDN00_04015 PF10431 C-terminal, D2-small domain, of ClpB protein FDN00_04015 PF07724 AAA domain (Cdc48 subfamily) FDN00_04015 PF06689 ClpX C4-type zinc finger FDN00_04030 PF05683 Fumarase C-terminus FDN00_04030 PF05681 Fumarate hydratase (Fumerase) FDN00_04035 PF01515 Phosphate acetyl/butaryl transferase FDN00_04035 PF07085 DRTGG domain FDN00_04040 PF00871 Acetokinase family FDN00_04045 PF00920 Dehydratase family FDN00_04050 PF01081 KDPG and KHG aldolase FDN00_04055 PF02447 GntP family permease FDN00_04060 PF01202 Shikimate kinase FDN00_04065 PF00171 Aldehyde dehydrogenase family FDN00_04070 PF00171 Aldehyde dehydrogenase family FDN00_04075 PF00561 alpha/beta hydrolase fold FDN00_04085 PF00933 Glycosyl hydrolase family 3 N terminal domain FDN00_04090 PF11818 C-terminal domain of tail specific protease (DUF3340) FDN00_04090 PF00595 PDZ domain FDN00_04090 PF03572 Peptidase family S41 FDN00_04090 PF17804 Tail specific protease N-terminal domain FDN00_04095 PF00534 Glycosyl transferases group 1 FDN00_04095 PF13439 Glycosyltransferase Family 4 FDN00_04100 PF01569 PAP2 superfamily FDN00_04105 PF04384 Iron-sulphur cluster assembly FDN00_04110 PF00334 Nucleoside diphosphate kinase FDN00_04115 PF04055 Radical SAM superfamily FDN00_04130 PF04551 GcpE protein FDN00_04135 PF13393 Histidyl-tRNA synthetase FDN00_04135 PF03129 Anticodon binding domain FDN00_04145 PF13360 PQQ-like domain FDN00_04150 PF01926 50S ribosome-binding GTPase FDN00_04150 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FDN00_04165 PF00550 Phosphopantetheine attachment site FDN00_04170 PF00550 Phosphopantetheine attachment site FDN00_04180 PF00501 AMP-binding enzyme FDN00_04180 PF13193 AMP-binding enzyme C-terminal domain FDN00_04195 PF00221 Aromatic amino acid lyase FDN00_04215 PF04820 Tryptophan halogenase FDN00_04225 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN00_04225 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN00_04240 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN00_04240 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN00_04255 PF02556 Preprotein translocase subunit SecB FDN00_04260 PF00462 Glutaredoxin FDN00_04270 PF03193 RsgA GTPase FDN00_04275 PF00929 Exonuclease FDN00_04290 PF02321 Outer membrane efflux protein FDN00_04295 PF02687 FtsX-like permease family FDN00_04295 PF00005 ABC transporter FDN00_04295 PF12704 MacB-like periplasmic core domain FDN00_04300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN00_04315 PF00133 tRNA synthetases class I (I, L, M and V) FDN00_04315 PF13603 Leucyl-tRNA synthetase, Domain 2 FDN00_04315 PF08264 Anticodon-binding domain of tRNA FDN00_04315 PF09334 tRNA synthetases class I (M) FDN00_04325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDN00_04325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDN00_04325 PF00205 Thiamine pyrophosphate enzyme, central domain FDN00_04330 PF10369 Small subunit of acetolactate synthase FDN00_04335 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDN00_04335 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FDN00_04340 PF00990 Diguanylate cyclase, GGDEF domain FDN00_04340 PF03707 Bacterial signalling protein N terminal repeat FDN00_04340 PF00563 EAL domain FDN00_04360 PF16658 Class II release factor RF3, C-terminal domain FDN00_04360 PF03144 Elongation factor Tu domain 2 FDN00_04360 PF00009 Elongation factor Tu GTP binding domain FDN00_04375 PF01026 TatD related DNase FDN00_04380 PF00694 Aconitase C-terminal domain FDN00_04380 PF00330 Aconitase family (aconitate hydratase) FDN00_04390 PF00899 ThiF family FDN00_04400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_04400 PF03466 LysR substrate binding domain FDN00_04410 PF01207 Dihydrouridine synthase (Dus) FDN00_04415 PF07690 Major Facilitator Superfamily FDN00_04425 PF00892 EamA-like transporter family FDN00_04430 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FDN00_04430 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FDN00_04435 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FDN00_04440 PF02233 NAD(P) transhydrogenase beta subunit FDN00_04445 PF00106 short chain dehydrogenase FDN00_04455 PF01261 Xylose isomerase-like TIM barrel FDN00_04460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDN00_04460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDN00_04465 PF00378 Enoyl-CoA hydratase/isomerase FDN00_04470 PF00512 His Kinase A (phospho-acceptor) domain FDN00_04470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_04470 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDN00_04470 PF00672 HAMP domain FDN00_04470 PF01627 Hpt domain FDN00_04470 PF00072 Response regulator receiver domain FDN00_04475 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_04485 PF05958 tRNA (Uracil-5-)-methyltransferase FDN00_04490 PF13291 ACT domain FDN00_04490 PF04607 Region found in RelA / SpoT proteins FDN00_04490 PF02824 TGS domain FDN00_04500 PF03819 MazG nucleotide pyrophosphohydrolase domain FDN00_04510 PF01743 Poly A polymerase head domain FDN00_04510 PF12626 Polymerase A arginine-rich C-terminus FDN00_04510 PF12627 Probable RNA and SrmB- binding site of polymerase A FDN00_04515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FDN00_04520 PF02548 Ketopantoate hydroxymethyltransferase FDN00_04525 PF02569 Pantoate-beta-alanine ligase FDN00_04530 PF03668 P-loop ATPase protein family FDN00_04535 PF00381 PTS HPr component phosphorylation site FDN00_04540 PF04751 Protein of unknown function (DUF615) FDN00_04545 PF00501 AMP-binding enzyme FDN00_04545 PF13193 AMP-binding enzyme C-terminal domain FDN00_04550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDN00_04550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDN00_04550 PF02824 TGS domain FDN00_04550 PF03129 Anticodon binding domain FDN00_04555 PF00707 Translation initiation factor IF-3, C-terminal domain FDN00_04555 PF05198 Translation initiation factor IF-3, N-terminal domain FDN00_04565 PF02798 Glutathione S-transferase, N-terminal domain FDN00_04565 PF00043 Glutathione S-transferase, C-terminal domain FDN00_04570 PF09335 SNARE associated Golgi protein FDN00_04575 PF07690 Major Facilitator Superfamily FDN00_04580 PF01632 Ribosomal protein L35 FDN00_04585 PF00453 Ribosomal protein L20 FDN00_04605 PF01409 tRNA synthetases class II core domain (F) FDN00_04605 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FDN00_04610 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FDN00_04610 PF03147 Ferredoxin-fold anticodon binding domain FDN00_04610 PF03484 tRNA synthetase B5 domain FDN00_04610 PF03483 B3/4 domain FDN00_04610 PF01588 Putative tRNA binding domain FDN00_04615 PF00216 Bacterial DNA-binding protein FDN00_04630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDN00_04630 PF07498 Rho termination factor, N-terminal domain FDN00_04630 PF07497 Rho termination factor, RNA-binding domain FDN00_04635 PF00085 Thioredoxin FDN00_04640 PF02541 Ppx/GppA phosphatase family FDN00_04645 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FDN00_04650 PF09179 TilS substrate binding domain FDN00_04650 PF11734 TilS substrate C-terminal domain FDN00_04650 PF01171 PP-loop family FDN00_04655 PF03807 NADP oxidoreductase coenzyme F420-dependent FDN00_04655 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDN00_04660 PF02325 YGGT family FDN00_04685 PF00437 Type II/IV secretion system protein FDN00_04690 PF02566 OsmC-like protein FDN00_04695 PF01047 MarR family FDN00_04705 PF00795 Carbon-nitrogen hydrolase FDN00_04750 PF00309 Sigma-54 factor, Activator interacting domain (AID) FDN00_04750 PF04552 Sigma-54, DNA binding domain FDN00_04750 PF04963 Sigma-54 factor, core binding domain FDN00_04755 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FDN00_04760 PF01722 BolA-like protein FDN00_04765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDN00_04770 PF01634 ATP phosphoribosyltransferase FDN00_04775 PF00815 Histidinol dehydrogenase FDN00_04780 PF00155 Aminotransferase class I and II FDN00_04785 PF04715 Anthranilate synthase component I, N terminal region FDN00_04785 PF00425 chorismate binding enzyme FDN00_04825 PF00293 NUDIX domain FDN00_04830 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_04835 PF00814 Glycoprotease family FDN00_04840 PF04445 Putative SAM-dependent methyltransferase FDN00_04850 PF00756 Putative esterase FDN00_04860 PF00834 Ribulose-phosphate 3 epimerase family FDN00_04875 PF07732 Multicopper oxidase FDN00_04875 PF07731 Multicopper oxidase FDN00_04875 PF00394 Multicopper oxidase FDN00_04880 PF05275 Copper resistance protein B precursor (CopB) FDN00_04890 PF00893 Small Multidrug Resistance protein FDN00_04895 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDN00_04895 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDN00_04900 PF01960 ArgJ family FDN00_04905 PF02445 Quinolinate synthetase A protein FDN00_04930 PF00962 Adenosine/AMP deaminase FDN00_04935 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_04935 PF00107 Zinc-binding dehydrogenase FDN00_04940 PF03466 LysR substrate binding domain FDN00_04940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_04945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_04945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_04945 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_04950 PF07690 Major Facilitator Superfamily FDN00_04955 PF02515 CoA-transferase family III FDN00_04965 PF14537 Cytochrome c3 FDN00_04965 PF00890 FAD binding domain FDN00_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_04970 PF03466 LysR substrate binding domain FDN00_04980 PF07690 Major Facilitator Superfamily FDN00_04990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_04990 PF03466 LysR substrate binding domain FDN00_05000 PF01546 Peptidase family M20/M25/M40 FDN00_05000 PF07687 Peptidase dimerisation domain FDN00_05005 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDN00_05005 PF12833 Helix-turn-helix domain FDN00_05015 PF01810 LysE type translocator FDN00_05020 PF03466 LysR substrate binding domain FDN00_05020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_05030 PF08267 Cobalamin-independent synthase, N-terminal domain FDN00_05030 PF01717 Cobalamin-independent synthase, Catalytic domain FDN00_05035 PF01613 Flavin reductase like domain FDN00_05065 PF02567 Phenazine biosynthesis-like protein FDN00_05085 PF13360 PQQ-like domain FDN00_05085 PF01011 PQQ enzyme repeat FDN00_05155 PF13755 Sensor N-terminal transmembrane domain FDN00_05155 PF00672 HAMP domain FDN00_05155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_05155 PF13756 Stimulus-sensing domain FDN00_05155 PF00512 His Kinase A (phospho-acceptor) domain FDN00_05165 PF00268 Ribonucleotide reductase, small chain FDN00_05175 PF00317 Ribonucleotide reductase, all-alpha domain FDN00_05175 PF02867 Ribonucleotide reductase, barrel domain FDN00_05175 PF03477 ATP cone domain FDN00_05185 PF00486 Transcriptional regulatory protein, C terminal FDN00_05185 PF00072 Response regulator receiver domain FDN00_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_05190 PF00512 His Kinase A (phospho-acceptor) domain FDN00_05190 PF00672 HAMP domain FDN00_05200 PF17151 Periplasmic sensor domain FDN00_05200 PF00990 Diguanylate cyclase, GGDEF domain FDN00_05205 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FDN00_05210 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FDN00_05215 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FDN00_05215 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FDN00_05225 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FDN00_05225 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FDN00_05225 PF10531 SLBB domain FDN00_05230 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FDN00_05230 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDN00_05230 PF00384 Molybdopterin oxidoreductase FDN00_05235 PF00146 NADH dehydrogenase FDN00_05240 PF12838 4Fe-4S dicluster domain FDN00_05245 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FDN00_05250 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDN00_05255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDN00_05255 PF00361 Proton-conducting membrane transporter FDN00_05260 PF00361 Proton-conducting membrane transporter FDN00_05265 PF00361 Proton-conducting membrane transporter FDN00_05275 PF00313 'Cold-shock' DNA-binding domain FDN00_05280 PF03466 LysR substrate binding domain FDN00_05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_05285 PF00175 Oxidoreductase NAD-binding domain FDN00_05285 PF00970 Oxidoreductase FAD-binding domain FDN00_05300 PF05552 Conserved TM helix FDN00_05315 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_05320 PF13533 Biotin-lipoyl like FDN00_05345 PF09334 tRNA synthetases class I (M) FDN00_05345 PF01588 Putative tRNA binding domain FDN00_05355 PF10609 NUBPL iron-transfer P-loop NTPase FDN00_05365 PF01048 Phosphorylase superfamily FDN00_05380 PF00692 dUTPase FDN00_05415 PF01207 Dihydrouridine synthase (Dus) FDN00_05425 PF02978 Signal peptide binding domain FDN00_05425 PF00448 SRP54-type protein, GTPase domain FDN00_05425 PF02881 SRP54-type protein, helical bundle domain FDN00_05430 PF03309 Type III pantothenate kinase FDN00_05440 PF01925 Sulfite exporter TauE/SafE FDN00_05450 PF06470 SMC proteins Flexible Hinge Domain FDN00_05450 PF02463 RecF/RecN/SMC N terminal domain FDN00_05460 PF03120 NAD-dependent DNA ligase OB-fold domain FDN00_05460 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FDN00_05460 PF12826 Helix-hairpin-helix motif FDN00_05460 PF00533 BRCA1 C Terminus (BRCT) domain FDN00_05460 PF01653 NAD-dependent DNA ligase adenylation domain FDN00_05465 PF00210 Ferritin-like domain FDN00_05470 PF07690 Major Facilitator Superfamily FDN00_05475 PF00982 Glycosyltransferase family 20 FDN00_05480 PF02358 Trehalose-phosphatase FDN00_05485 PF08241 Methyltransferase domain FDN00_05485 PF12697 Alpha/beta hydrolase family FDN00_05490 PF00202 Aminotransferase class-III FDN00_05490 PF04055 Radical SAM superfamily FDN00_05490 PF06968 Biotin and Thiamin Synthesis associated domain FDN00_05495 PF00155 Aminotransferase class I and II FDN00_05510 PF00849 RNA pseudouridylate synthase FDN00_05510 PF01479 S4 domain FDN00_05515 PF04079 Segregation and condensation complex subunit ScpB FDN00_05520 PF02616 Segregation and condensation protein ScpA FDN00_05525 PF01300 Telomere recombination FDN00_05530 PF04315 Elongation factor P hydroxylase FDN00_05535 PF02620 Large ribosomal RNA subunit accumulation protein YceD FDN00_05540 PF01783 Ribosomal L32p protein family FDN00_05545 PF00698 Acyl transferase domain FDN00_05555 PF00550 Phosphopantetheine attachment site FDN00_05560 PF01476 LysM domain FDN00_05560 PF04972 BON domain FDN00_05565 PF08543 Phosphomethylpyrimidine kinase FDN00_05565 PF03070 TENA/THI-4/PQQC family FDN00_05565 PF02581 Thiamine monophosphate synthase FDN00_05575 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDN00_05590 PF02261 Aspartate decarboxylase FDN00_05595 PF01195 Peptidyl-tRNA hydrolase FDN00_05600 PF01386 Ribosomal L25p family FDN00_05605 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDN00_05605 PF14572 Phosphoribosyl synthetase-associated domain FDN00_05615 PF00288 GHMP kinases N terminal domain FDN00_05615 PF08544 GHMP kinases C terminal FDN00_05620 PF03550 Outer membrane lipoprotein LolB FDN00_05630 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FDN00_05630 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FDN00_05630 PF01488 Shikimate / quinate 5-dehydrogenase FDN00_05635 PF08278 DNA primase DnaG DnaB-binding FDN00_05635 PF08275 DNA primase catalytic core, N-terminal domain FDN00_05635 PF01807 CHC2 zinc finger FDN00_05635 PF10410 DnaB-helicase binding domain of primase FDN00_05640 PF13525 Outer membrane lipoprotein FDN00_05645 PF01479 S4 domain FDN00_05645 PF00849 RNA pseudouridylate synthase FDN00_05655 PF03358 NADPH-dependent FMN reductase FDN00_05660 PF01668 SmpB protein FDN00_05665 PF01467 Cytidylyltransferase-like FDN00_05670 PF00037 4Fe-4S binding domain FDN00_05690 PF03466 LysR substrate binding domain FDN00_05690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_05695 PF00180 Isocitrate/isopropylmalate dehydrogenase FDN00_05700 PF02028 BCCT, betaine/carnitine/choline family transporter FDN00_05705 PF07859 alpha/beta hydrolase fold FDN00_05710 PF00355 Rieske [2Fe-2S] domain FDN00_05710 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN00_05715 PF00171 Aldehyde dehydrogenase family FDN00_05720 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN00_05720 PF00175 Oxidoreductase NAD-binding domain FDN00_05720 PF00970 Oxidoreductase FAD-binding domain FDN00_05735 PF02540 NAD synthase FDN00_05735 PF00795 Carbon-nitrogen hydrolase FDN00_05745 PF05726 Pirin C-terminal cupin domain FDN00_05745 PF02678 Pirin FDN00_05755 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN00_05755 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN00_05765 PF00164 Ribosomal protein S12/S23 FDN00_05770 PF00177 Ribosomal protein S7p/S5e FDN00_05775 PF00009 Elongation factor Tu GTP binding domain FDN00_05775 PF00679 Elongation factor G C-terminus FDN00_05775 PF14492 Elongation Factor G, domain II FDN00_05775 PF03144 Elongation factor Tu domain 2 FDN00_05775 PF03764 Elongation factor G, domain IV FDN00_05780 PF03143 Elongation factor Tu C-terminal domain FDN00_05780 PF03144 Elongation factor Tu domain 2 FDN00_05780 PF00009 Elongation factor Tu GTP binding domain FDN00_05795 PF00583 Acetyltransferase (GNAT) family FDN00_05800 PF04376 Arginine-tRNA-protein transferase, N terminus FDN00_05800 PF04377 Arginine-tRNA-protein transferase, C terminus FDN00_05805 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FDN00_05810 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_05815 PF09397 Ftsk gamma domain FDN00_05815 PF01580 FtsK/SpoIIIE family FDN00_05815 PF17854 FtsK alpha domain FDN00_05815 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FDN00_05820 PF01810 LysE type translocator FDN00_05835 PF03776 Septum formation topological specificity factor MinE FDN00_05840 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FDN00_05845 PF03775 Septum formation inhibitor MinC, C-terminal domain FDN00_05860 PF13488 Glycine zipper FDN00_05860 PF00691 OmpA family FDN00_05865 PF00580 UvrD/REP helicase N-terminal domain FDN00_05865 PF13361 UvrD-like helicase C-terminal domain FDN00_05870 PF00692 dUTPase FDN00_05875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDN00_05875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDN00_05875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDN00_05875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDN00_05880 PF00696 Amino acid kinase family FDN00_05890 PF13230 Glutamine amidotransferases class-II FDN00_05895 PF01814 Hemerythrin HHE cation binding domain FDN00_05910 PF03658 RnfH family Ubiquitin FDN00_05915 PF04355 SmpA / OmlA family FDN00_05920 PF01475 Ferric uptake regulator family FDN00_05925 PF00437 Type II/IV secretion system protein FDN00_05930 PF00437 Type II/IV secretion system protein FDN00_05935 PF01168 Alanine racemase, N-terminal domain FDN00_05945 PF00149 Calcineurin-like phosphoesterase FDN00_05945 PF12320 Type 5 capsule protein repressor C-terminal domain FDN00_05965 PF01370 NAD dependent epimerase/dehydratase family FDN00_05965 PF08338 Domain of unknown function (DUF1731) FDN00_05970 PF01266 FAD dependent oxidoreductase FDN00_05975 PF00490 Delta-aminolevulinic acid dehydratase FDN00_05980 PF03061 Thioesterase superfamily FDN00_05985 PF13533 Biotin-lipoyl like FDN00_05990 PF07690 Major Facilitator Superfamily FDN00_06060 PF00929 Exonuclease FDN00_06095 PF00717 Peptidase S24-like FDN00_06095 PF01381 Helix-turn-helix FDN00_06140 PF00145 C-5 cytosine-specific DNA methylase FDN00_06150 PF01695 IstB-like ATP binding protein FDN00_06175 PF07007 Lysozyme inhibitor LprI FDN00_06325 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FDN00_06365 PF02767 DNA polymerase III beta subunit, central domain FDN00_06365 PF02768 DNA polymerase III beta subunit, C-terminal domain FDN00_06365 PF00712 DNA polymerase III beta subunit, N-terminal domain FDN00_06450 PF07693 KAP family P-loop domain FDN00_06465 PF01026 TatD related DNase FDN00_06485 PF00083 Sugar (and other) transporter FDN00_06490 PF00701 Dihydrodipicolinate synthetase family FDN00_06500 PF08281 Sigma-70, region 4 FDN00_06500 PF04542 Sigma-70 region 2 FDN00_06510 PF07715 TonB-dependent Receptor Plug Domain FDN00_06510 PF00593 TonB dependent receptor FDN00_06530 PF01126 Heme oxygenase FDN00_06555 PF13520 Amino acid permease FDN00_06560 PF02574 Homocysteine S-methyltransferase FDN00_06570 PF06039 Malate:quinone oxidoreductase (Mqo) FDN00_06575 PF00732 GMC oxidoreductase FDN00_06575 PF05199 GMC oxidoreductase FDN00_06580 PF00171 Aldehyde dehydrogenase family FDN00_06585 PF13977 BetI-type transcriptional repressor, C-terminal FDN00_06585 PF00440 Bacterial regulatory proteins, tetR family FDN00_06590 PF02028 BCCT, betaine/carnitine/choline family transporter FDN00_06595 PF02028 BCCT, betaine/carnitine/choline family transporter FDN00_06605 PF03061 Thioesterase superfamily FDN00_06615 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDN00_06615 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDN00_06620 PF00375 Sodium:dicarboxylate symporter family FDN00_06625 PF07152 YaeQ protein FDN00_06630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN00_06635 PF14883 Hypothetical glycosyl hydrolase family 13 FDN00_06635 PF01522 Polysaccharide deacetylase FDN00_06640 PF00535 Glycosyl transferase family 2 FDN00_06650 PF00378 Enoyl-CoA hydratase/isomerase FDN00_06665 PF09339 IclR helix-turn-helix domain FDN00_06665 PF01614 Bacterial transcriptional regulator FDN00_06670 PF00355 Rieske [2Fe-2S] domain FDN00_06680 PF00355 Rieske [2Fe-2S] domain FDN00_06690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDN00_06695 PF14759 Reductase C-terminal FDN00_06695 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_06700 PF07690 Major Facilitator Superfamily FDN00_06710 PF12697 Alpha/beta hydrolase family FDN00_06720 PF03447 Homoserine dehydrogenase, NAD binding domain FDN00_06720 PF01958 Domain of unknown function DUF108 FDN00_06725 PF00171 Aldehyde dehydrogenase family FDN00_06730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDN00_06730 PF00205 Thiamine pyrophosphate enzyme, central domain FDN00_06730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDN00_06740 PF07690 Major Facilitator Superfamily FDN00_06745 PF01327 Polypeptide deformylase FDN00_06755 PF02311 AraC-like ligand binding domain FDN00_06755 PF12833 Helix-turn-helix domain FDN00_06760 PF07690 Major Facilitator Superfamily FDN00_06765 PF01263 Aldose 1-epimerase FDN00_06780 PF03466 LysR substrate binding domain FDN00_06780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_06790 PF07690 Major Facilitator Superfamily FDN00_06795 PF00456 Transketolase, thiamine diphosphate binding domain FDN00_06800 PF02779 Transketolase, pyrimidine binding domain FDN00_06800 PF02780 Transketolase, C-terminal domain FDN00_06805 PF02310 B12 binding domain FDN00_06805 PF02607 B12 binding domain FDN00_06805 PF02574 Homocysteine S-methyltransferase FDN00_06805 PF02965 Vitamin B12 dependent methionine synthase, activation domain FDN00_06805 PF00809 Pterin binding enzyme FDN00_06810 PF01384 Phosphate transporter family FDN00_06815 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_06830 PF03781 Sulfatase-modifying factor enzyme 1 FDN00_06835 PF00884 Sulfatase FDN00_06845 PF01106 NifU-like domain FDN00_06845 PF01521 Iron-sulphur cluster biosynthesis FDN00_06850 PF07715 TonB-dependent Receptor Plug Domain FDN00_06850 PF00593 TonB dependent receptor FDN00_06860 PF00561 alpha/beta hydrolase fold FDN00_06865 PF00484 Carbonic anhydrase FDN00_06875 PF00005 ABC transporter FDN00_06885 PF01694 Rhomboid family FDN00_06890 PF00912 Transglycosylase FDN00_06895 PF02503 Polyphosphate kinase middle domain FDN00_06895 PF13089 Polyphosphate kinase N-terminal domain FDN00_06895 PF17941 Polyphosphate kinase C-terminal domain 1 FDN00_06895 PF13090 Polyphosphate kinase C-terminal domain 2 FDN00_06905 PF03466 LysR substrate binding domain FDN00_06905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_06910 PF00561 alpha/beta hydrolase fold FDN00_06915 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_06915 PF18113 Rubredoxin binding C-terminal domain FDN00_06920 PF00301 Rubredoxin FDN00_06935 PF00152 tRNA synthetases class II (D, K and N) FDN00_06935 PF01336 OB-fold nucleic acid binding domain FDN00_06940 PF14052 Capsule assembly protein Wzi FDN00_06950 PF01507 Phosphoadenosine phosphosulfate reductase family FDN00_06955 PF00009 Elongation factor Tu GTP binding domain FDN00_06970 PF03600 Citrate transporter FDN00_06980 PF03471 Transporter associated domain FDN00_06980 PF01595 Cyclin M transmembrane N-terminal domain FDN00_06980 PF00571 CBS domain FDN00_06985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_06985 PF03466 LysR substrate binding domain FDN00_06990 PF00463 Isocitrate lyase family FDN00_07005 PF01774 UreD urease accessory protein FDN00_07010 PF00547 Urease, gamma subunit FDN00_07015 PF00699 Urease beta subunit FDN00_07020 PF01979 Amidohydrolase family FDN00_07020 PF00449 Urease alpha-subunit, N-terminal domain FDN00_07025 PF05194 UreE urease accessory protein, C-terminal domain FDN00_07025 PF02814 UreE urease accessory protein, N-terminal domain FDN00_07030 PF01730 UreF FDN00_07035 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDN00_07050 PF03717 Penicillin-binding Protein dimerisation domain FDN00_07050 PF00905 Penicillin binding protein transpeptidase domain FDN00_07065 PF05191 Adenylate kinase, active site lid FDN00_07075 PF00633 Helix-hairpin-helix motif FDN00_07075 PF10576 Iron-sulfur binding domain of endonuclease III FDN00_07075 PF00730 HhH-GPD superfamily base excision DNA repair protein FDN00_07080 PF04060 Putative Fe-S cluster FDN00_07085 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDN00_07085 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDN00_07095 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FDN00_07100 PF02590 Predicted SPOUT methyltransferase FDN00_07105 PF05362 Lon protease (S16) C-terminal proteolytic domain FDN00_07105 PF00004 ATPase family associated with various cellular activities (AAA) FDN00_07105 PF02190 ATP-dependent protease La (LON) substrate-binding domain FDN00_07110 PF03895 YadA-like membrane anchor domain FDN00_07110 PF05662 Coiled stalk of trimeric autotransporter adhesin FDN00_07110 PF05658 Head domain of trimeric autotransporter adhesin FDN00_07110 PF13018 Extended Signal Peptide of Type V secretion system FDN00_07120 PF01812 5-formyltetrahydrofolate cyclo-ligase family FDN00_07490 PF08019 Phosphoethanolamine transferase EptA/EptB FDN00_07490 PF00884 Sulfatase FDN00_07525 PF05195 Aminopeptidase P, N-terminal domain FDN00_07525 PF00557 Metallopeptidase family M24 FDN00_07530 PF01494 FAD binding domain FDN00_07535 PF01494 FAD binding domain FDN00_07545 PF13411 MerR HTH family regulatory protein FDN00_07555 PF01810 LysE type translocator FDN00_07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_07560 PF03466 LysR substrate binding domain FDN00_07570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDN00_07575 PF02021 Uncharacterised protein family UPF0102 FDN00_07580 PF04972 BON domain FDN00_07590 PF00293 NUDIX domain FDN00_07590 PF09297 NADH pyrophosphatase zinc ribbon domain FDN00_07600 PF00929 Exonuclease FDN00_07605 PF01464 Transglycosylase SLT domain FDN00_07605 PF01476 LysM domain FDN00_07605 PF01464 Transglycosylase SLT domain FDN00_07605 PF01476 LysM domain FDN00_07610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDN00_07615 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_07620 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_07620 PF12911 N-terminal TM domain of oligopeptide transport permease C FDN00_07625 PF00005 ABC transporter FDN00_07625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDN00_07630 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_07630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN00_07635 PF07715 TonB-dependent Receptor Plug Domain FDN00_07635 PF00593 TonB dependent receptor FDN00_07645 PF00929 Exonuclease FDN00_07650 PF01979 Amidohydrolase family FDN00_07655 PF00563 EAL domain FDN00_07655 PF01590 GAF domain FDN00_07655 PF00990 Diguanylate cyclase, GGDEF domain FDN00_07655 PF00360 Phytochrome region FDN00_07660 PF00764 Arginosuccinate synthase FDN00_07665 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_07665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN00_07680 PF05987 Bacterial protein of unknown function (DUF898) FDN00_07685 PF03180 NLPA lipoprotein FDN00_07700 PF16671 Actin cross-linking domain FDN00_07700 PF04717 Type VI secretion system, phage-baseplate injector FDN00_07710 PF13610 DDE domain FDN00_07720 PF01636 Phosphotransferase enzyme family FDN00_07725 PF13610 DDE domain FDN00_07730 PF00589 Phage integrase family FDN00_07730 PF13495 Phage integrase, N-terminal SAM-like domain FDN00_07740 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_07745 PF13427 Domain of unknown function (DUF4111) FDN00_07745 PF01909 Nucleotidyltransferase domain FDN00_07750 PF00893 Small Multidrug Resistance protein FDN00_07755 PF00809 Pterin binding enzyme FDN00_07775 PF07091 Ribosomal RNA methyltransferase (FmrO) FDN00_07800 PF01636 Phosphotransferase enzyme family FDN00_07810 PF13007 Transposase C of IS166 homeodomain FDN00_07810 PF13005 zinc-finger binding domain of transposase IS66 FDN00_07810 PF13817 IS66 C-terminal element FDN00_07810 PF03050 Transposase IS66 family FDN00_07835 PF13610 DDE domain FDN00_07850 PF00375 Sodium:dicarboxylate symporter family FDN00_07860 PF16123 Hydroxyacylglutathione hydrolase C-terminus FDN00_07860 PF00753 Metallo-beta-lactamase superfamily FDN00_07865 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_07870 PF09383 NIL domain FDN00_07870 PF00005 ABC transporter FDN00_07875 PF03180 NLPA lipoprotein FDN00_07880 PF02844 Phosphoribosylglycinamide synthetase, N domain FDN00_07880 PF02843 Phosphoribosylglycinamide synthetase, C domain FDN00_07880 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FDN00_07885 PF02142 MGS-like domain FDN00_07885 PF01808 AICARFT/IMPCHase bienzyme FDN00_07890 PF02954 Bacterial regulatory protein, Fis family FDN00_07910 PF13932 GidA associated domain FDN00_07910 PF01134 Glucose inhibited division protein A FDN00_07920 PF14403 Circularly permuted ATP-grasp type 2 FDN00_07930 PF01841 Transglutaminase-like superfamily FDN00_07930 PF08379 Bacterial transglutaminase-like N-terminal region FDN00_07940 PF01168 Alanine racemase, N-terminal domain FDN00_07940 PF00842 Alanine racemase, C-terminal domain FDN00_07945 PF03796 DnaB-like helicase C terminal domain FDN00_07945 PF00772 DnaB-like helicase N terminal domain FDN00_07950 PF01281 Ribosomal protein L9, N-terminal domain FDN00_07950 PF03948 Ribosomal protein L9, C-terminal domain FDN00_07955 PF01084 Ribosomal protein S18 FDN00_07960 PF01250 Ribosomal protein S6 FDN00_07965 PF01040 UbiA prenyltransferase family FDN00_07970 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FDN00_07975 PF00510 Cytochrome c oxidase subunit III FDN00_07980 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDN00_07985 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FDN00_07985 PF06481 COX Aromatic Rich Motif FDN00_07995 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FDN00_07995 PF02896 PEP-utilising enzyme, TIM barrel domain FDN00_07995 PF00391 PEP-utilising enzyme, mobile domain FDN00_08000 PF03618 Kinase/pyrophosphorylase FDN00_08010 PF01522 Polysaccharide deacetylase FDN00_08010 PF14883 Hypothetical glycosyl hydrolase family 13 FDN00_08015 PF00535 Glycosyl transferase family 2 FDN00_08020 PF13994 PgaD-like protein FDN00_08030 PF00296 Luciferase-like monooxygenase FDN00_08050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_08050 PF03466 LysR substrate binding domain FDN00_08060 PF00472 RF-1 domain FDN00_08060 PF03462 PCRF domain FDN00_08065 PF13847 Methyltransferase domain FDN00_08065 PF17827 PrmC N-terminal domain FDN00_08070 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_08075 PF09084 NMT1/THI5 like FDN00_08080 PF12833 Helix-turn-helix domain FDN00_08085 PF00106 short chain dehydrogenase FDN00_08090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_08090 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_08090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_08095 PF13193 AMP-binding enzyme C-terminal domain FDN00_08095 PF00501 AMP-binding enzyme FDN00_08100 PF01613 Flavin reductase like domain FDN00_08105 PF00899 ThiF family FDN00_08110 PF03109 ABC1 family FDN00_08125 PF03814 Potassium-transporting ATPase A subunit FDN00_08135 PF02669 K+-transporting ATPase, c chain FDN00_08140 PF02702 Osmosensitive K+ channel His kinase sensor domain FDN00_08140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_08140 PF00512 His Kinase A (phospho-acceptor) domain FDN00_08140 PF13493 Domain of unknown function (DUF4118) FDN00_08145 PF00072 Response regulator receiver domain FDN00_08145 PF00486 Transcriptional regulatory protein, C terminal FDN00_08150 PF00120 Glutamine synthetase, catalytic domain FDN00_08160 PF03232 Ubiquinone biosynthesis protein COQ7 FDN00_08165 PF07690 Major Facilitator Superfamily FDN00_08170 PF01103 Surface antigen FDN00_08170 PF07244 Surface antigen variable number repeat FDN00_08170 PF17243 POTRA domain TamA domain 1 FDN00_08200 PF00520 Ion transport protein FDN00_08200 PF00027 Cyclic nucleotide-binding domain FDN00_08205 PF07690 Major Facilitator Superfamily FDN00_08220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_08220 PF03466 LysR substrate binding domain FDN00_08225 PF04284 Protein of unknown function (DUF441) FDN00_08235 PF01479 S4 domain FDN00_08235 PF00849 RNA pseudouridylate synthase FDN00_08250 PF01479 S4 domain FDN00_08250 PF00849 RNA pseudouridylate synthase FDN00_08255 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FDN00_08260 PF01119 DNA mismatch repair protein, C-terminal domain FDN00_08260 PF08676 MutL C terminal dimerisation domain FDN00_08270 PF17209 Hfq protein FDN00_08280 PF00881 Nitroreductase family FDN00_08290 PF00149 Calcineurin-like phosphoesterase FDN00_08295 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDN00_08300 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FDN00_08300 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDN00_08305 PF00117 Glutamine amidotransferase class-I FDN00_08305 PF02540 NAD synthase FDN00_08305 PF00958 GMP synthase C terminal domain FDN00_08310 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FDN00_08315 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FDN00_08320 PF13520 Amino acid permease FDN00_08325 PF00171 Aldehyde dehydrogenase family FDN00_08340 PF00465 Iron-containing alcohol dehydrogenase FDN00_08345 PF05970 PIF1-like helicase FDN00_08345 PF14493 Helix-turn-helix domain FDN00_08355 PF06445 GyrI-like small molecule binding domain FDN00_08360 PF02110 Hydroxyethylthiazole kinase family FDN00_08375 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FDN00_08375 PF01433 Peptidase family M1 domain FDN00_08375 PF11940 Domain of unknown function (DUF3458) Ig-like fold FDN00_08385 PF00106 short chain dehydrogenase FDN00_08395 PF01817 Chorismate mutase type II FDN00_08400 PF01037 Lrp/AsnC ligand binding domain FDN00_08415 PF00440 Bacterial regulatory proteins, tetR family FDN00_08420 PF07715 TonB-dependent Receptor Plug Domain FDN00_08420 PF00593 TonB dependent receptor FDN00_08425 PF00924 Mechanosensitive ion channel FDN00_08460 PF07715 TonB-dependent Receptor Plug Domain FDN00_08460 PF00593 TonB dependent receptor FDN00_08480 PF00005 ABC transporter FDN00_08480 PF12848 ABC transporter FDN00_08485 PF00582 Universal stress protein family FDN00_08500 PF00689 Cation transporting ATPase, C-terminus FDN00_08500 PF00690 Cation transporter/ATPase, N-terminus FDN00_08505 PF02308 MgtC family FDN00_08510 PF03594 Benzoate membrane transport protein FDN00_08515 PF01037 Lrp/AsnC ligand binding domain FDN00_08520 PF01810 LysE type translocator FDN00_08540 PF00108 Thiolase, N-terminal domain FDN00_08540 PF02803 Thiolase, C-terminal domain FDN00_08565 PF07690 Major Facilitator Superfamily FDN00_08570 PF12169 DNA polymerase III subunits gamma and tau domain III FDN00_08570 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FDN00_08570 PF12170 DNA polymerase III tau subunit V interacting with alpha FDN00_08575 PF04185 Phosphoesterase family FDN00_08575 PF05506 Domain of unknown function (DUF756) FDN00_08580 PF03061 Thioesterase superfamily FDN00_08585 PF00465 Iron-containing alcohol dehydrogenase FDN00_08595 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDN00_08600 PF01565 FAD binding domain FDN00_08600 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FDN00_08615 PF01645 Conserved region in glutamate synthase FDN00_08695 PF02384 N-6 DNA Methylase FDN00_08695 PF12161 HsdM N-terminal domain FDN00_08745 PF00149 Calcineurin-like phosphoesterase FDN00_08975 PF08019 Phosphoethanolamine transferase EptA/EptB FDN00_08975 PF00884 Sulfatase FDN00_08980 PF12832 MFS_1 like family FDN00_08990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN00_08990 PF00289 Biotin carboxylase, N-terminal domain FDN00_08990 PF02785 Biotin carboxylase C-terminal domain FDN00_08995 PF00364 Biotin-requiring enzyme FDN00_09000 PF01220 Dehydroquinase class II FDN00_09005 PF13438 Domain of unknown function (DUF4113) FDN00_09005 PF11799 impB/mucB/samB family C-terminal domain FDN00_09005 PF00817 impB/mucB/samB family FDN00_09015 PF00005 ABC transporter FDN00_09020 PF00486 Transcriptional regulatory protein, C terminal FDN00_09020 PF00072 Response regulator receiver domain FDN00_09030 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_09030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDN00_09030 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDN00_09030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDN00_09030 PF04324 BFD-like [2Fe-2S] binding domain FDN00_09030 PF13806 Rieske-like [2Fe-2S] domain FDN00_09035 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDN00_09035 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_09035 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDN00_09035 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDN00_09035 PF04324 BFD-like [2Fe-2S] binding domain FDN00_09040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDN00_09040 PF04324 BFD-like [2Fe-2S] binding domain FDN00_09040 PF00384 Molybdopterin oxidoreductase FDN00_09040 PF01568 Molydopterin dinucleotide binding domain FDN00_09045 PF12804 MobA-like NTP transferase domain FDN00_09050 PF01568 Molydopterin dinucleotide binding domain FDN00_09050 PF00384 Molybdopterin oxidoreductase FDN00_09050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDN00_09055 PF06463 Molybdenum Cofactor Synthesis C FDN00_09055 PF04055 Radical SAM superfamily FDN00_09065 PF02391 MoaE protein FDN00_09070 PF00994 Probable molybdopterin binding domain FDN00_09070 PF01967 MoaC family FDN00_09080 PF01638 HxlR-like helix-turn-helix FDN00_09085 PF00155 Aminotransferase class I and II FDN00_09085 PF00392 Bacterial regulatory proteins, gntR family FDN00_09090 PF00892 EamA-like transporter family FDN00_09110 PF02635 DsrE/DsrF-like family FDN00_09115 PF16363 GDP-mannose 4,6 dehydratase FDN00_09120 PF00206 Lyase FDN00_09120 PF10415 Fumarase C C-terminus FDN00_09145 PF01266 FAD dependent oxidoreductase FDN00_09155 PF02542 YgbB family FDN00_09165 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDN00_09165 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDN00_09170 PF00440 Bacterial regulatory proteins, tetR family FDN00_09175 PF00158 Sigma-54 interaction domain FDN00_09175 PF02954 Bacterial regulatory protein, Fis family FDN00_09175 PF00072 Response regulator receiver domain FDN00_09180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_09180 PF00512 His Kinase A (phospho-acceptor) domain FDN00_09180 PF00989 PAS fold FDN00_09190 PF00919 Uncharacterized protein family UPF0004 FDN00_09190 PF18693 TRAM domain FDN00_09190 PF04055 Radical SAM superfamily FDN00_09195 PF00696 Amino acid kinase family FDN00_09200 PF01765 Ribosome recycling factor FDN00_09205 PF01255 Putative undecaprenyl diphosphate synthase FDN00_09215 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FDN00_09215 PF13288 DXP reductoisomerase C-terminal domain FDN00_09215 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FDN00_09220 PF17820 PDZ domain FDN00_09220 PF02163 Peptidase family M50 FDN00_09220 PF13180 PDZ domain FDN00_09225 PF01103 Surface antigen FDN00_09225 PF07244 Surface antigen variable number repeat FDN00_09235 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_09235 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FDN00_09240 PF07977 FabA-like domain FDN00_09245 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FDN00_09245 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_09260 PF02631 RecX family FDN00_09265 PF00154 recA bacterial DNA recombination protein FDN00_09270 PF01479 S4 domain FDN00_09275 PF13419 Haloacid dehalogenase-like hydrolase FDN00_09300 PF01037 Lrp/AsnC ligand binding domain FDN00_09305 PF00266 Aminotransferase class-V FDN00_09310 PF00324 Amino acid permease FDN00_09320 PF05922 Peptidase inhibitor I9 FDN00_09320 PF00082 Subtilase family FDN00_09325 PF01740 STAS domain FDN00_09325 PF00916 Sulfate permease family FDN00_09330 PF02586 SOS response associated peptidase (SRAP) FDN00_09335 PF07995 Glucose / Sorbosone dehydrogenase FDN00_09345 PF03707 Bacterial signalling protein N terminal repeat FDN00_09345 PF00990 Diguanylate cyclase, GGDEF domain FDN00_09345 PF00563 EAL domain FDN00_09365 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDN00_09365 PF02378 Phosphotransferase system, EIIC FDN00_09370 PF00294 pfkB family carbohydrate kinase FDN00_09375 PF00391 PEP-utilising enzyme, mobile domain FDN00_09375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDN00_09375 PF00381 PTS HPr component phosphorylation site FDN00_09375 PF02896 PEP-utilising enzyme, TIM barrel domain FDN00_09375 PF05524 PEP-utilising enzyme, N-terminal FDN00_09400 PF05525 Branched-chain amino acid transport protein FDN00_09405 PF00557 Metallopeptidase family M24 FDN00_09410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_09410 PF03466 LysR substrate binding domain FDN00_09420 PF00462 Glutaredoxin FDN00_09425 PF00202 Aminotransferase class-III FDN00_09430 PF00478 IMP dehydrogenase / GMP reductase domain FDN00_09430 PF00571 CBS domain FDN00_09460 PF00448 SRP54-type protein, GTPase domain FDN00_09460 PF02881 SRP54-type protein, helical bundle domain FDN00_09470 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FDN00_09485 PF08173 Membrane bound YbgT-like protein FDN00_09490 PF02322 Cytochrome bd terminal oxidase subunit II FDN00_09495 PF01654 Cytochrome bd terminal oxidase subunit I FDN00_09515 PF07290 Protein of unknown function (DUF1449) FDN00_09525 PF00294 pfkB family carbohydrate kinase FDN00_09530 PF00593 TonB dependent receptor FDN00_09530 PF07715 TonB-dependent Receptor Plug Domain FDN00_09535 PF05193 Peptidase M16 inactive domain FDN00_09535 PF00675 Insulinase (Peptidase family M16) FDN00_09535 PF08367 Peptidase M16C associated FDN00_09540 PF02253 Phospholipase A1 FDN00_09545 PF02386 Cation transport protein FDN00_09550 PF02080 TrkA-C domain FDN00_09550 PF02254 TrkA-N domain FDN00_09555 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_09555 PF00585 C-terminal regulatory domain of Threonine dehydratase FDN00_09560 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FDN00_09575 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDN00_09575 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDN00_09585 PF02617 ATP-dependent Clp protease adaptor protein ClpS FDN00_09590 PF00004 ATPase family associated with various cellular activities (AAA) FDN00_09590 PF10431 C-terminal, D2-small domain, of ClpB protein FDN00_09590 PF17871 AAA lid domain FDN00_09590 PF02861 Clp amino terminal domain, pathogenicity island component FDN00_09590 PF07724 AAA domain (Cdc48 subfamily) FDN00_09595 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FDN00_09600 PF00793 DAHP synthetase I family FDN00_09615 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_09615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN00_09645 PF06418 CTP synthase N-terminus FDN00_09645 PF00117 Glutamine amidotransferase class-I FDN00_09650 PF00793 DAHP synthetase I family FDN00_09655 PF00113 Enolase, C-terminal TIM barrel domain FDN00_09655 PF03952 Enolase, N-terminal domain FDN00_09660 PF04239 Protein of unknown function (DUF421) FDN00_09665 PF04977 Septum formation initiator FDN00_09670 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FDN00_09680 PF01144 Coenzyme A transferase FDN00_09685 PF02803 Thiolase, C-terminal domain FDN00_09685 PF00108 Thiolase, N-terminal domain FDN00_09690 PF00206 Lyase FDN00_09690 PF10397 Adenylosuccinate lyase C-terminus FDN00_09695 PF00561 alpha/beta hydrolase fold FDN00_09700 PF07690 Major Facilitator Superfamily FDN00_09705 PF02627 Carboxymuconolactone decarboxylase family FDN00_09710 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FDN00_09710 PF00775 Dioxygenase FDN00_09715 PF00775 Dioxygenase FDN00_09720 PF01487 Type I 3-dehydroquinase FDN00_09725 PF05048 Periplasmic copper-binding protein (NosD) FDN00_09730 PF04966 Carbohydrate-selective porin, OprB family FDN00_09735 PF01011 PQQ enzyme repeat FDN00_09735 PF13360 PQQ-like domain FDN00_09745 PF04143 Sulphur transport FDN00_09755 PF00753 Metallo-beta-lactamase superfamily FDN00_09760 PF09339 IclR helix-turn-helix domain FDN00_09760 PF01614 Bacterial transcriptional regulator FDN00_09765 PF03466 LysR substrate binding domain FDN00_09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_09770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_09770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_09770 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_09785 PF00106 short chain dehydrogenase FDN00_09795 PF07690 Major Facilitator Superfamily FDN00_09805 PF01425 Amidase FDN00_09810 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN00_09825 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN00_09825 PF00355 Rieske [2Fe-2S] domain FDN00_09840 PF00175 Oxidoreductase NAD-binding domain FDN00_09840 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN00_09845 PF01613 Flavin reductase like domain FDN00_09850 PF12833 Helix-turn-helix domain FDN00_09850 PF02311 AraC-like ligand binding domain FDN00_09855 PF02727 Copper amine oxidase, N2 domain FDN00_09855 PF01179 Copper amine oxidase, enzyme domain FDN00_09855 PF02728 Copper amine oxidase, N3 domain FDN00_09855 PF07833 Copper amine oxidase N-terminal domain FDN00_09865 PF00171 Aldehyde dehydrogenase family FDN00_09870 PF01804 Penicillin amidase FDN00_09875 PF12146 Serine aminopeptidase, S33 FDN00_09880 PF02803 Thiolase, C-terminal domain FDN00_09880 PF00108 Thiolase, N-terminal domain FDN00_09885 PF01144 Coenzyme A transferase FDN00_09895 PF00775 Dioxygenase FDN00_09895 PF04444 Catechol dioxygenase N terminus FDN00_09900 PF02426 Muconolactone delta-isomerase FDN00_09905 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDN00_09905 PF13378 Enolase C-terminal domain-like FDN00_09910 PF03466 LysR substrate binding domain FDN00_09910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_09920 PF07729 FCD domain FDN00_09920 PF00392 Bacterial regulatory proteins, gntR family FDN00_09925 PF00920 Dehydratase family FDN00_09930 PF07690 Major Facilitator Superfamily FDN00_09940 PF00171 Aldehyde dehydrogenase family FDN00_09960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_09960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_09960 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_09970 PF02954 Bacterial regulatory protein, Fis family FDN00_09970 PF06506 Propionate catabolism activator FDN00_09970 PF00158 Sigma-54 interaction domain FDN00_09975 PF13193 AMP-binding enzyme C-terminal domain FDN00_09975 PF00501 AMP-binding enzyme FDN00_09980 PF04341 Protein of unknown function, DUF485 FDN00_09990 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_09990 PF00107 Zinc-binding dehydrogenase FDN00_09995 PF00171 Aldehyde dehydrogenase family FDN00_10005 PF00561 alpha/beta hydrolase fold FDN00_10010 PF06628 Catalase-related immune-responsive FDN00_10010 PF00199 Catalase FDN00_10030 PF07859 alpha/beta hydrolase fold FDN00_10035 PF01047 MarR family FDN00_10040 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_10040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN00_10045 PF00106 short chain dehydrogenase FDN00_10050 PF01872 RibD C-terminal domain FDN00_10055 PF09278 MerR, DNA binding FDN00_10055 PF00376 MerR family regulatory protein FDN00_10065 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_10075 PF12706 Beta-lactamase superfamily domain FDN00_10080 PF00440 Bacterial regulatory proteins, tetR family FDN00_10080 PF08359 YsiA-like protein, C-terminal region FDN00_10090 PF00857 Isochorismatase family FDN00_10095 PF03466 LysR substrate binding domain FDN00_10095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_10100 PF07995 Glucose / Sorbosone dehydrogenase FDN00_10105 PF00999 Sodium/hydrogen exchanger family FDN00_10105 PF02254 TrkA-N domain FDN00_10115 PF01546 Peptidase family M20/M25/M40 FDN00_10115 PF07687 Peptidase dimerisation domain FDN00_10135 PF13018 Extended Signal Peptide of Type V secretion system FDN00_10135 PF05860 haemagglutination activity domain FDN00_10135 PF13332 Hemagglutinin repeat FDN00_10135 PF04829 Pre-toxin domain with VENN motif FDN00_10150 PF07690 Major Facilitator Superfamily FDN00_10155 PF04909 Amidohydrolase FDN00_10170 PF08450 SMP-30/Gluconolactonase/LRE-like region FDN00_10180 PF03466 LysR substrate binding domain FDN00_10180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_10200 PF07690 Major Facilitator Superfamily FDN00_10205 PF01842 ACT domain FDN00_10205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDN00_10205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDN00_10210 PF03737 Aldolase/RraA FDN00_10230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN00_10230 PF00529 HlyD membrane-fusion protein of T1SS FDN00_10245 PF00171 Aldehyde dehydrogenase family FDN00_10250 PF00920 Dehydratase family FDN00_10260 PF03466 LysR substrate binding domain FDN00_10260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_10265 PF01370 NAD dependent epimerase/dehydratase family FDN00_10270 PF07690 Major Facilitator Superfamily FDN00_10275 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDN00_10275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDN00_10280 PF12833 Helix-turn-helix domain FDN00_10280 PF06719 AraC-type transcriptional regulator N-terminus FDN00_10295 PF00107 Zinc-binding dehydrogenase FDN00_10295 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_10310 PF00005 ABC transporter FDN00_10330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDN00_10330 PF14572 Phosphoribosyl synthetase-associated domain FDN00_10335 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDN00_10410 PF00196 Bacterial regulatory proteins, luxR family FDN00_10415 PF01425 Amidase FDN00_10420 PF13533 Biotin-lipoyl like FDN00_10425 PF07690 Major Facilitator Superfamily FDN00_10450 PF01975 Survival protein SurE FDN00_10460 PF02824 TGS domain FDN00_10460 PF04607 Region found in RelA / SpoT proteins FDN00_10460 PF13291 ACT domain FDN00_10515 PF12146 Serine aminopeptidase, S33 FDN00_10520 PF02311 AraC-like ligand binding domain FDN00_10520 PF12833 Helix-turn-helix domain FDN00_10530 PF00512 His Kinase A (phospho-acceptor) domain FDN00_10530 PF16527 Two-component sensor protein CpxA, periplasmic domain FDN00_10530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_10530 PF00672 HAMP domain FDN00_10535 PF00072 Response regulator receiver domain FDN00_10535 PF00486 Transcriptional regulatory protein, C terminal FDN00_10540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN00_10540 PF00529 HlyD membrane-fusion protein of T1SS FDN00_10545 PF00873 AcrB/AcrD/AcrF family FDN00_10550 PF02321 Outer membrane efflux protein FDN00_10555 PF12146 Serine aminopeptidase, S33 FDN00_10560 PF00743 Flavin-binding monooxygenase-like FDN00_10565 PF01593 Flavin containing amine oxidoreductase FDN00_10580 PF01266 FAD dependent oxidoreductase FDN00_10600 PF00916 Sulfate permease family FDN00_10600 PF01740 STAS domain FDN00_10605 PF00582 Universal stress protein family FDN00_10625 PF00665 Integrase core domain FDN00_10640 PF16970 Type-1 fimbrial protein, A FDN00_10650 PF02753 Pili assembly chaperone PapD, C-terminal domain FDN00_10650 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FDN00_10655 PF00577 Outer membrane usher protein FDN00_10655 PF13953 PapC C-terminal domain FDN00_10655 PF13954 PapC N-terminal domain FDN00_10660 PF00419 Fimbrial protein FDN00_10670 PF00107 Zinc-binding dehydrogenase FDN00_10670 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_10680 PF00199 Catalase FDN00_10695 PF13091 PLD-like domain FDN00_10715 PF01244 Membrane dipeptidase (Peptidase family M19) FDN00_10720 PF04055 Radical SAM superfamily FDN00_10720 PF13186 Iron-sulfur cluster-binding domain FDN00_10725 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FDN00_10730 PF03070 TENA/THI-4/PQQC family FDN00_10735 PF12706 Beta-lactamase superfamily domain FDN00_10740 PF08042 PqqA family FDN00_10745 PF13090 Polyphosphate kinase C-terminal domain 2 FDN00_10745 PF13089 Polyphosphate kinase N-terminal domain FDN00_10745 PF02503 Polyphosphate kinase middle domain FDN00_10745 PF17941 Polyphosphate kinase C-terminal domain 1 FDN00_10750 PF00149 Calcineurin-like phosphoesterase FDN00_10770 PF00857 Isochorismatase family FDN00_10770 PF00550 Phosphopantetheine attachment site FDN00_10775 PF00106 short chain dehydrogenase FDN00_10780 PF03459 TOBE domain FDN00_10780 PF00005 ABC transporter FDN00_10785 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_10795 PF03459 TOBE domain FDN00_10800 PF00355 Rieske [2Fe-2S] domain FDN00_10800 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN00_10805 PF00866 Ring hydroxylating beta subunit FDN00_10810 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN00_10810 PF00175 Oxidoreductase NAD-binding domain FDN00_10810 PF00970 Oxidoreductase FAD-binding domain FDN00_10815 PF12833 Helix-turn-helix domain FDN00_10815 PF14525 AraC-binding-like domain FDN00_10825 PF01613 Flavin reductase like domain FDN00_10840 PF01738 Dienelactone hydrolase family FDN00_10845 PF07690 Major Facilitator Superfamily FDN00_10850 PF12833 Helix-turn-helix domain FDN00_10850 PF06719 AraC-type transcriptional regulator N-terminus FDN00_10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_10875 PF03466 LysR substrate binding domain FDN00_10880 PF01144 Coenzyme A transferase FDN00_10885 PF01144 Coenzyme A transferase FDN00_10890 PF02667 Short chain fatty acid transporter FDN00_10895 PF00108 Thiolase, N-terminal domain FDN00_10895 PF02803 Thiolase, C-terminal domain FDN00_10900 PF00665 Integrase core domain FDN00_10900 PF13936 Helix-turn-helix domain FDN00_10910 PF03466 LysR substrate binding domain FDN00_10910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_10925 PF00206 Lyase FDN00_10925 PF10415 Fumarase C C-terminus FDN00_10930 PF00593 TonB dependent receptor FDN00_10930 PF07715 TonB-dependent Receptor Plug Domain FDN00_10935 PF00083 Sugar (and other) transporter FDN00_10950 PF00005 ABC transporter FDN00_10955 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_10985 PF02525 Flavodoxin-like fold FDN00_10990 PF01638 HxlR-like helix-turn-helix FDN00_10995 PF06445 GyrI-like small molecule binding domain FDN00_10995 PF12833 Helix-turn-helix domain FDN00_11010 PF01925 Sulfite exporter TauE/SafE FDN00_11015 PF00753 Metallo-beta-lactamase superfamily FDN00_11015 PF04273 Putative phosphatase (DUF442) FDN00_11020 PF04273 Putative phosphatase (DUF442) FDN00_11020 PF00753 Metallo-beta-lactamase superfamily FDN00_11025 PF02954 Bacterial regulatory protein, Fis family FDN00_11025 PF00158 Sigma-54 interaction domain FDN00_11025 PF00072 Response regulator receiver domain FDN00_11030 PF01062 Bestrophin, RFP-TM, chloride channel FDN00_11035 PF00107 Zinc-binding dehydrogenase FDN00_11035 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_11040 PF00106 short chain dehydrogenase FDN00_11045 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_11045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDN00_11050 PF02817 e3 binding domain FDN00_11050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDN00_11050 PF00364 Biotin-requiring enzyme FDN00_11055 PF02779 Transketolase, pyrimidine binding domain FDN00_11055 PF02780 Transketolase, C-terminal domain FDN00_11060 PF00676 Dehydrogenase E1 component FDN00_11065 PF04055 Radical SAM superfamily FDN00_11080 PF08448 PAS fold FDN00_11080 PF00990 Diguanylate cyclase, GGDEF domain FDN00_11085 PF01264 Chorismate synthase FDN00_11090 PF05175 Methyltransferase small domain FDN00_11095 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_11105 PF17862 AAA+ lid domain FDN00_11105 PF01434 Peptidase family M41 FDN00_11105 PF00004 ATPase family associated with various cellular activities (AAA) FDN00_11115 PF05166 YcgL domain FDN00_11135 PF01612 3'-5' exonuclease FDN00_11135 PF00570 HRDC domain FDN00_11140 PF13662 Toprim domain FDN00_11140 PF02132 RecR protein FDN00_11145 PF02575 YbaB/EbfC DNA-binding family FDN00_11155 PF01053 Cys/Met metabolism PLP-dependent enzyme FDN00_11160 PF00561 alpha/beta hydrolase fold FDN00_11165 PF08241 Methyltransferase domain FDN00_11195 PF01230 HIT domain FDN00_11230 PF00005 ABC transporter FDN00_11235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN00_11245 PF02684 Lipid-A-disaccharide synthetase FDN00_11250 PF07715 TonB-dependent Receptor Plug Domain FDN00_11250 PF00593 TonB dependent receptor FDN00_11270 PF01925 Sulfite exporter TauE/SafE FDN00_11275 PF00793 DAHP synthetase I family FDN00_11280 PF02654 Cobalamin-5-phosphate synthase FDN00_11295 PF02277 Phosphoribosyltransferase FDN00_11355 PF06276 Ferric iron reductase FhuF-like transporter FDN00_11355 PF04183 IucA / IucC family FDN00_11360 PF04183 IucA / IucC family FDN00_11360 PF06276 Ferric iron reductase FhuF-like transporter FDN00_11365 PF07690 Major Facilitator Superfamily FDN00_11370 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FDN00_11375 PF06276 Ferric iron reductase FhuF-like transporter FDN00_11375 PF04183 IucA / IucC family FDN00_11380 PF04073 Aminoacyl-tRNA editing domain FDN00_11390 PF03109 ABC1 family FDN00_11395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_11395 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_11395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_11400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_11400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_11400 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_11405 PF00487 Fatty acid desaturase FDN00_11410 PF12833 Helix-turn-helix domain FDN00_11410 PF12852 Cupin FDN00_11415 PF09312 SurA N-terminal domain FDN00_11415 PF00639 PPIC-type PPIASE domain FDN00_11420 PF00216 Bacterial DNA-binding protein FDN00_11435 PF02082 Transcriptional regulator FDN00_11440 PF00266 Aminotransferase class-V FDN00_11445 PF01592 NifU-like N terminal domain FDN00_11450 PF01521 Iron-sulphur cluster biosynthesis FDN00_11455 PF00226 DnaJ domain FDN00_11455 PF07743 HSCB C-terminal oligomerisation domain FDN00_11465 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN00_11470 PF00211 Adenylate and Guanylate cyclase catalytic domain FDN00_11480 PF02559 CarD-like/TRCF domain FDN00_11480 PF00270 DEAD/DEAH box helicase FDN00_11480 PF00271 Helicase conserved C-terminal domain FDN00_11480 PF03461 TRCF domain FDN00_11480 PF17757 UvrB interaction domain FDN00_11500 PF03737 Aldolase/RraA FDN00_11505 PF13460 NAD(P)H-binding FDN00_11510 PF01649 Ribosomal protein S20 FDN00_11520 PF00459 Inositol monophosphatase family FDN00_11535 PF00005 ABC transporter FDN00_11535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDN00_11540 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_11545 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_11550 PF01432 Peptidase family M3 FDN00_11570 PF07715 TonB-dependent Receptor Plug Domain FDN00_11570 PF00593 TonB dependent receptor FDN00_11580 PF01618 MotA/TolQ/ExbB proton channel family FDN00_11585 PF02472 Biopolymer transport protein ExbD/TolR FDN00_11590 PF02472 Biopolymer transport protein ExbD/TolR FDN00_11600 PF01274 Malate synthase FDN00_11605 PF03969 AFG1-like ATPase FDN00_11615 PF00743 Flavin-binding monooxygenase-like FDN00_11625 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FDN00_11635 PF00216 Bacterial DNA-binding protein FDN00_11640 PF00575 S1 RNA binding domain FDN00_11645 PF02224 Cytidylate kinase FDN00_11655 PF14437 MafB19-like deaminase FDN00_11665 PF03167 Uracil DNA glycosylase superfamily FDN00_11675 PF03934 Type II secretion system (T2SS), protein K FDN00_11680 PF11612 Type II secretion system (T2SS), protein J FDN00_11680 PF07963 Prokaryotic N-terminal methylation motif FDN00_11685 PF02501 Type II secretion system (T2SS), protein I FDN00_11685 PF07963 Prokaryotic N-terminal methylation motif FDN00_11700 PF01026 TatD related DNase FDN00_11710 PF09115 DNA polymerase III, delta subunit, C terminal FDN00_11715 PF02348 Cytidylyltransferase FDN00_11720 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FDN00_11725 PF00005 ABC transporter FDN00_11725 PF00664 ABC transporter transmembrane region FDN00_11735 PF01618 MotA/TolQ/ExbB proton channel family FDN00_11740 PF17762 HTH domain found in ParB protein FDN00_11740 PF02195 ParB-like nuclease domain FDN00_11745 PF13614 AAA domain FDN00_11750 PF02527 rRNA small subunit methyltransferase G FDN00_11755 PF00483 Nucleotidyl transferase FDN00_11760 PF01636 Phosphotransferase enzyme family FDN00_11765 PF03968 OstA-like protein FDN00_11765 PF04453 LPS transport system D FDN00_11770 PF00639 PPIC-type PPIASE domain FDN00_11770 PF09312 SurA N-terminal domain FDN00_11775 PF01116 Fructose-bisphosphate aldolase class-II FDN00_11785 PF00162 Phosphoglycerate kinase FDN00_11795 PF02545 Maf-like protein FDN00_11800 PF08007 Cupin superfamily protein FDN00_11815 PF00375 Sodium:dicarboxylate symporter family FDN00_11820 PF06912 Protein of unknown function (DUF1275) FDN00_11825 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FDN00_11830 PF00664 ABC transporter transmembrane region FDN00_11830 PF00005 ABC transporter FDN00_11840 PF12833 Helix-turn-helix domain FDN00_11840 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDN00_11845 PF01597 Glycine cleavage H-protein FDN00_11850 PF02146 Sir2 family FDN00_11855 PF00474 Sodium:solute symporter family FDN00_11860 PF01037 Lrp/AsnC ligand binding domain FDN00_11865 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FDN00_11865 PF14850 DNA-binding domain of Proline dehydrogenase FDN00_11865 PF01619 Proline dehydrogenase FDN00_11865 PF00171 Aldehyde dehydrogenase family FDN00_11870 PF04229 GrpB protein FDN00_11875 PF05958 tRNA (Uracil-5-)-methyltransferase FDN00_11885 PF09992 Phosphodiester glycosidase FDN00_11895 PF04264 YceI-like domain FDN00_11905 PF02780 Transketolase, C-terminal domain FDN00_11905 PF02779 Transketolase, pyrimidine binding domain FDN00_11905 PF00456 Transketolase, thiamine diphosphate binding domain FDN00_11910 PF02773 S-adenosylmethionine synthetase, C-terminal domain FDN00_11910 PF02772 S-adenosylmethionine synthetase, central domain FDN00_11910 PF00438 S-adenosylmethionine synthetase, N-terminal domain FDN00_11945 PF02075 Crossover junction endodeoxyribonuclease RuvC FDN00_11950 PF01256 Carbohydrate kinase FDN00_11950 PF03853 YjeF-related protein N-terminus FDN00_11955 PF08331 Domain of unknown function (DUF1730) FDN00_11960 PF04055 Radical SAM superfamily FDN00_11960 PF06968 Biotin and Thiamin Synthesis associated domain FDN00_11975 PF16970 Type-1 fimbrial protein, A FDN00_11980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FDN00_11980 PF02753 Pili assembly chaperone PapD, C-terminal domain FDN00_11985 PF13954 PapC N-terminal domain FDN00_11985 PF13953 PapC C-terminal domain FDN00_11985 PF00577 Outer membrane usher protein FDN00_12010 PF00892 EamA-like transporter family FDN00_12020 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDN00_12030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12030 PF03466 LysR substrate binding domain FDN00_12050 PF00440 Bacterial regulatory proteins, tetR family FDN00_12060 PF01709 Transcriptional regulator FDN00_12065 PF01037 Lrp/AsnC ligand binding domain FDN00_12075 PF00005 ABC transporter FDN00_12080 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_12085 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_12100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_12100 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN00_12110 PF00296 Luciferase-like monooxygenase FDN00_12115 PF03180 NLPA lipoprotein FDN00_12120 PF03180 NLPA lipoprotein FDN00_12125 PF09383 NIL domain FDN00_12125 PF00005 ABC transporter FDN00_12130 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_12135 PF06071 Protein of unknown function (DUF933) FDN00_12135 PF01926 50S ribosome-binding GTPase FDN00_12160 PF03591 AzlC protein FDN00_12165 PF05437 Branched-chain amino acid transport protein (AzlD) FDN00_12175 PF02222 ATP-grasp domain FDN00_12180 PF01909 Nucleotidyltransferase domain FDN00_12180 PF08335 GlnD PII-uridylyltransferase FDN00_12180 PF01966 HD domain FDN00_12185 PF00155 Aminotransferase class I and II FDN00_12195 PF12833 Helix-turn-helix domain FDN00_12195 PF12852 Cupin FDN00_12200 PF00255 Glutathione peroxidase FDN00_12205 PF01641 SelR domain FDN00_12210 PF00155 Aminotransferase class I and II FDN00_12215 PF00375 Sodium:dicarboxylate symporter family FDN00_12220 PF17763 Glutaminase/Asparaginase C-terminal domain FDN00_12220 PF00710 Asparaginase, N-terminal FDN00_12225 PF02811 PHP domain FDN00_12225 PF14579 Helix-hairpin-helix motif FDN00_12225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDN00_12225 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDN00_12225 PF01336 OB-fold nucleic acid binding domain FDN00_12230 PF00588 SpoU rRNA Methylase family FDN00_12235 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_12250 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_12250 PF13192 Thioredoxin domain FDN00_12265 PF03466 LysR substrate binding domain FDN00_12265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12270 PF01758 Sodium Bile acid symporter family FDN00_12275 PF01022 Bacterial regulatory protein, arsR family FDN00_12280 PF03960 ArsC family FDN00_12290 PF01979 Amidohydrolase family FDN00_12290 PF13382 Adenine deaminase C-terminal domain FDN00_12300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12300 PF03466 LysR substrate binding domain FDN00_12310 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDN00_12315 PF01177 Asp/Glu/Hydantoin racemase FDN00_12320 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FDN00_12335 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDN00_12345 PF00083 Sugar (and other) transporter FDN00_12350 PF00296 Luciferase-like monooxygenase FDN00_12355 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_12355 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN00_12355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_12370 PF01654 Cytochrome bd terminal oxidase subunit I FDN00_12375 PF02322 Cytochrome bd terminal oxidase subunit II FDN00_12385 PF00155 Aminotransferase class I and II FDN00_12385 PF00392 Bacterial regulatory proteins, gntR family FDN00_12390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12390 PF03466 LysR substrate binding domain FDN00_12405 PF00698 Acyl transferase domain FDN00_12410 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FDN00_12420 PF01039 Carboxyl transferase domain FDN00_12425 PF06857 Malonate decarboxylase delta subunit (MdcD) FDN00_12430 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FDN00_12435 PF16957 Malonate decarboxylase, alpha subunit, transporter FDN00_12440 PF07690 Major Facilitator Superfamily FDN00_12455 PF00392 Bacterial regulatory proteins, gntR family FDN00_12455 PF00155 Aminotransferase class I and II FDN00_12460 PF04172 LrgB-like family FDN00_12465 PF03788 LrgA family FDN00_12470 PF03466 LysR substrate binding domain FDN00_12470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12475 PF02798 Glutathione S-transferase, N-terminal domain FDN00_12475 PF14834 Glutathione S-transferase, C-terminal domain FDN00_12480 PF02798 Glutathione S-transferase, N-terminal domain FDN00_12485 PF03466 LysR substrate binding domain FDN00_12485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12495 PF00581 Rhodanese-like domain FDN00_12500 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_12510 PF00266 Aminotransferase class-V FDN00_12515 PF01810 LysE type translocator FDN00_12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12520 PF03466 LysR substrate binding domain FDN00_12530 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN00_12535 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN00_12540 PF00005 ABC transporter FDN00_12545 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_12550 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_12565 PF00072 Response regulator receiver domain FDN00_12570 PF00072 Response regulator receiver domain FDN00_12570 PF09308 LuxQ, periplasmic FDN00_12570 PF00512 His Kinase A (phospho-acceptor) domain FDN00_12570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_12580 PF01037 Lrp/AsnC ligand binding domain FDN00_12580 PF13404 AsnC-type helix-turn-helix domain FDN00_12590 PF00717 Peptidase S24-like FDN00_12615 PF18011 C-terminal domain found in long catalases FDN00_12615 PF06628 Catalase-related immune-responsive FDN00_12615 PF00199 Catalase FDN00_12625 PF00994 Probable molybdopterin binding domain FDN00_12625 PF18146 Damage-inducible protein CinA KH domain FDN00_12625 PF02464 Competence-damaged protein FDN00_12655 PF03466 LysR substrate binding domain FDN00_12655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12675 PF00501 AMP-binding enzyme FDN00_12675 PF13193 AMP-binding enzyme C-terminal domain FDN00_12680 PF00440 Bacterial regulatory proteins, tetR family FDN00_12685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_12685 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_12685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_12690 PF01039 Carboxyl transferase domain FDN00_12700 PF00289 Biotin carboxylase, N-terminal domain FDN00_12700 PF02785 Biotin carboxylase C-terminal domain FDN00_12700 PF00364 Biotin-requiring enzyme FDN00_12700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN00_12705 PF00682 HMGL-like FDN00_12710 PF03466 LysR substrate binding domain FDN00_12710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_12725 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDN00_12725 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_12725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_12735 PF07690 Major Facilitator Superfamily FDN00_12745 PF01144 Coenzyme A transferase FDN00_12750 PF01144 Coenzyme A transferase FDN00_12755 PF07690 Major Facilitator Superfamily FDN00_12760 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_12760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_12760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_12765 PF00378 Enoyl-CoA hydratase/isomerase FDN00_12775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN00_12775 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FDN00_12775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN00_12780 PF00108 Thiolase, N-terminal domain FDN00_12780 PF02803 Thiolase, C-terminal domain FDN00_12785 PF09339 IclR helix-turn-helix domain FDN00_12790 PF07690 Major Facilitator Superfamily FDN00_12795 PF03060 Nitronate monooxygenase FDN00_12800 PF00378 Enoyl-CoA hydratase/isomerase FDN00_12805 PF09339 IclR helix-turn-helix domain FDN00_12810 PF02515 CoA-transferase family III FDN00_12815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_12815 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_12815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_12820 PF07690 Major Facilitator Superfamily FDN00_12825 PF13419 Haloacid dehalogenase-like hydrolase FDN00_12830 PF00266 Aminotransferase class-V FDN00_12835 PF01266 FAD dependent oxidoreductase FDN00_12840 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_12845 PF08402 TOBE domain FDN00_12845 PF00005 ABC transporter FDN00_12855 PF07702 UTRA domain FDN00_12855 PF00392 Bacterial regulatory proteins, gntR family FDN00_12860 PF01494 FAD binding domain FDN00_12865 PF13936 Helix-turn-helix domain FDN00_12865 PF00665 Integrase core domain FDN00_12875 PF09339 IclR helix-turn-helix domain FDN00_12875 PF01614 Bacterial transcriptional regulator FDN00_12880 PF02525 Flavodoxin-like fold FDN00_12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_12885 PF03466 LysR substrate binding domain FDN00_12890 PF02627 Carboxymuconolactone decarboxylase family FDN00_12905 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDN00_12915 PF00171 Aldehyde dehydrogenase family FDN00_12920 PF00296 Luciferase-like monooxygenase FDN00_12925 PF01613 Flavin reductase like domain FDN00_12930 PF12697 Alpha/beta hydrolase family FDN00_12950 PF01292 Prokaryotic cytochrome b561 FDN00_12955 PF00199 Catalase FDN00_12995 PF03061 Thioesterase superfamily FDN00_13000 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_13005 PF07848 PaaX-like protein FDN00_13005 PF08223 PaaX-like protein C-terminal domain FDN00_13010 PF14535 AMP-binding enzyme C-terminal domain FDN00_13010 PF00501 AMP-binding enzyme FDN00_13015 PF02803 Thiolase, C-terminal domain FDN00_13015 PF00108 Thiolase, N-terminal domain FDN00_13020 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN00_13020 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FDN00_13020 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN00_13025 PF00378 Enoyl-CoA hydratase/isomerase FDN00_13035 PF00175 Oxidoreductase NAD-binding domain FDN00_13035 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN00_13035 PF00970 Oxidoreductase FAD-binding domain FDN00_13040 PF01883 Iron-sulfur cluster assembly protein FDN00_13045 PF05138 Phenylacetic acid catabolic protein FDN00_13050 PF06243 Phenylacetic acid degradation B FDN00_13055 PF05138 Phenylacetic acid catabolic protein FDN00_13060 PF00171 Aldehyde dehydrogenase family FDN00_13060 PF01575 MaoC like domain FDN00_13065 PF03313 Serine dehydratase alpha chain FDN00_13065 PF03315 Serine dehydratase beta chain FDN00_13070 PF13520 Amino acid permease FDN00_13075 PF00171 Aldehyde dehydrogenase family FDN00_13080 PF00083 Sugar (and other) transporter FDN00_13090 PF04324 BFD-like [2Fe-2S] binding domain FDN00_13090 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_13100 PF01266 FAD dependent oxidoreductase FDN00_13105 PF05544 Proline racemase FDN00_13110 PF00392 Bacterial regulatory proteins, gntR family FDN00_13120 PF00701 Dihydrodipicolinate synthetase family FDN00_13135 PF09278 MerR, DNA binding FDN00_13135 PF00376 MerR family regulatory protein FDN00_13150 PF02677 Epoxyqueuosine reductase QueH FDN00_13165 PF07690 Major Facilitator Superfamily FDN00_13170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDN00_13180 PF03466 LysR substrate binding domain FDN00_13180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_13210 PF17871 AAA lid domain FDN00_13210 PF10431 C-terminal, D2-small domain, of ClpB protein FDN00_13210 PF07724 AAA domain (Cdc48 subfamily) FDN00_13210 PF00004 ATPase family associated with various cellular activities (AAA) FDN00_13215 PF00665 Integrase core domain FDN00_13215 PF13936 Helix-turn-helix domain FDN00_13225 PF00691 OmpA family FDN00_13225 PF01389 OmpA-like transmembrane domain FDN00_13295 PF00005 ABC transporter FDN00_13300 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN00_13305 PF01425 Amidase FDN00_13310 PF01402 Ribbon-helix-helix protein, copG family FDN00_13310 PF08753 NikR C terminal nickel binding domain FDN00_13330 PF02525 Flavodoxin-like fold FDN00_13335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN00_13335 PF00289 Biotin carboxylase, N-terminal domain FDN00_13335 PF02785 Biotin carboxylase C-terminal domain FDN00_13350 PF00107 Zinc-binding dehydrogenase FDN00_13350 PF13823 Alcohol dehydrogenase GroES-associated FDN00_13350 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_13360 PF00440 Bacterial regulatory proteins, tetR family FDN00_13385 PF00654 Voltage gated chloride channel FDN00_13390 PF00364 Biotin-requiring enzyme FDN00_13390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN00_13390 PF02785 Biotin carboxylase C-terminal domain FDN00_13390 PF00289 Biotin carboxylase, N-terminal domain FDN00_13400 PF07286 Protein of unknown function (DUF1445) FDN00_13405 PF03746 LamB/YcsF family FDN00_13410 PF01566 Natural resistance-associated macrophage protein FDN00_13415 PF03466 LysR substrate binding domain FDN00_13415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_13430 PF14220 Domain of unknown function (DUF4329) FDN00_13430 PF03527 RHS protein FDN00_13430 PF05593 RHS Repeat FDN00_13435 PF04717 Type VI secretion system, phage-baseplate injector FDN00_13435 PF16671 Actin cross-linking domain FDN00_13450 PF13419 Haloacid dehalogenase-like hydrolase FDN00_13470 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN00_13470 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN00_13490 PF07690 Major Facilitator Superfamily FDN00_13505 PF03279 Bacterial lipid A biosynthesis acyltransferase FDN00_13510 PF03707 Bacterial signalling protein N terminal repeat FDN00_13510 PF00563 EAL domain FDN00_13510 PF00990 Diguanylate cyclase, GGDEF domain FDN00_13515 PF00892 EamA-like transporter family FDN00_13520 PF01037 Lrp/AsnC ligand binding domain FDN00_13525 PF05190 MutS family domain IV FDN00_13525 PF05192 MutS domain III FDN00_13525 PF05188 MutS domain II FDN00_13525 PF01624 MutS domain I FDN00_13525 PF00488 MutS domain V FDN00_13535 PF00037 4Fe-4S binding domain FDN00_13535 PF11953 Domain of unknown function (DUF3470) FDN00_13545 PF01596 O-methyltransferase FDN00_13555 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_13560 PF01205 Uncharacterized protein family UPF0029 FDN00_13570 PF03412 Peptidase C39 family FDN00_13570 PF00005 ABC transporter FDN00_13570 PF00664 ABC transporter transmembrane region FDN00_13575 PF02321 Outer membrane efflux protein FDN00_13580 PF00005 ABC transporter FDN00_13580 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDN00_13585 PF03968 OstA-like protein FDN00_13600 PF00571 CBS domain FDN00_13600 PF01380 SIS domain FDN00_13605 PF01406 tRNA synthetases class I (C) catalytic domain FDN00_13605 PF09190 DALR domain FDN00_13635 PF01638 HxlR-like helix-turn-helix FDN00_13640 PF07690 Major Facilitator Superfamily FDN00_13670 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDN00_13670 PF03807 NADP oxidoreductase coenzyme F420-dependent FDN00_13680 PF00313 'Cold-shock' DNA-binding domain FDN00_13685 PF01810 LysE type translocator FDN00_13720 PF02601 Exonuclease VII, large subunit FDN00_13720 PF13742 OB-fold nucleic acid binding domain FDN00_13760 PF00376 MerR family regulatory protein FDN00_13760 PF09278 MerR, DNA binding FDN00_13765 PF00403 Heavy-metal-associated domain FDN00_13770 PF00403 Heavy-metal-associated domain FDN00_13775 PF03466 LysR substrate binding domain FDN00_13775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_13780 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN00_13780 PF00355 Rieske [2Fe-2S] domain FDN00_13785 PF00866 Ring hydroxylating beta subunit FDN00_13790 PF00970 Oxidoreductase FAD-binding domain FDN00_13790 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN00_13790 PF00175 Oxidoreductase NAD-binding domain FDN00_13795 PF00106 short chain dehydrogenase FDN00_13800 PF03594 Benzoate membrane transport protein FDN00_13805 PF07690 Major Facilitator Superfamily FDN00_13815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FDN00_13815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FDN00_13820 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FDN00_13820 PF00271 Helicase conserved C-terminal domain FDN00_13820 PF00270 DEAD/DEAH box helicase FDN00_13820 PF04408 Helicase associated domain (HA2) FDN00_13820 PF11898 Domain of unknown function (DUF3418) FDN00_13825 PF00578 AhpC/TSA family FDN00_13825 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDN00_13850 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_13850 PF13192 Thioredoxin domain FDN00_13860 PF02798 Glutathione S-transferase, N-terminal domain FDN00_13860 PF00043 Glutathione S-transferase, C-terminal domain FDN00_13870 PF02390 Putative methyltransferase FDN00_13875 PF00043 Glutathione S-transferase, C-terminal domain FDN00_13875 PF13417 Glutathione S-transferase, N-terminal domain FDN00_13885 PF00691 OmpA family FDN00_13885 PF13488 Glycine zipper FDN00_13890 PF01979 Amidohydrolase family FDN00_13895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDN00_13895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDN00_13905 PF02926 THUMP domain FDN00_13905 PF01170 Putative RNA methylase family UPF0020 FDN00_13905 PF10672 S-adenosylmethionine-dependent methyltransferase FDN00_13920 PF17871 AAA lid domain FDN00_13920 PF02861 Clp amino terminal domain, pathogenicity island component FDN00_13920 PF10431 C-terminal, D2-small domain, of ClpB protein FDN00_13920 PF00004 ATPase family associated with various cellular activities (AAA) FDN00_13920 PF07724 AAA domain (Cdc48 subfamily) FDN00_13935 PF02566 OsmC-like protein FDN00_13940 PF13545 Crp-like helix-turn-helix domain FDN00_13940 PF00027 Cyclic nucleotide-binding domain FDN00_13950 PF00248 Aldo/keto reductase family FDN00_13965 PF00709 Adenylosuccinate synthetase FDN00_13970 PF13393 Histidyl-tRNA synthetase FDN00_13975 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDN00_13975 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDN00_13980 PF01411 tRNA synthetases class II (A) FDN00_13980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDN00_13980 PF02272 DHHA1 domain FDN00_13985 PF13840 ACT domain FDN00_13985 PF01842 ACT domain FDN00_13985 PF00696 Amino acid kinase family FDN00_13990 PF02599 Global regulator protein family FDN00_14005 PF01292 Prokaryotic cytochrome b561 FDN00_14010 PF00962 Adenosine/AMP deaminase FDN00_14015 PF00860 Permease family FDN00_14030 PF03616 Sodium/glutamate symporter FDN00_14035 PF00561 alpha/beta hydrolase fold FDN00_14060 PF04076 Bacterial OB fold (BOF) protein FDN00_14090 PF00324 Amino acid permease FDN00_14095 PF00171 Aldehyde dehydrogenase family FDN00_14100 PF00202 Aminotransferase class-III FDN00_14105 PF03466 LysR substrate binding domain FDN00_14105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_14120 PF00069 Protein kinase domain FDN00_14140 PF00814 Glycoprotease family FDN00_14145 PF01165 Ribosomal protein S21 FDN00_14150 PF09424 Yqey-like protein FDN00_14155 PF01435 Peptidase family M48 FDN00_14160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDN00_14160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDN00_14175 PF00156 Phosphoribosyl transferase domain FDN00_14180 PF02674 Colicin V production protein FDN00_14185 PF01180 Dihydroorotate dehydrogenase FDN00_14205 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FDN00_14205 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FDN00_14210 PF00881 Nitroreductase family FDN00_14220 PF00271 Helicase conserved C-terminal domain FDN00_14220 PF00270 DEAD/DEAH box helicase FDN00_14225 PF00313 'Cold-shock' DNA-binding domain FDN00_14235 PF04542 Sigma-70 region 2 FDN00_14235 PF00140 Sigma-70 factor, region 1.2 FDN00_14235 PF04545 Sigma-70, region 4 FDN00_14240 PF04241 Protein of unknown function (DUF423) FDN00_14250 PF05690 Thiazole biosynthesis protein ThiG FDN00_14260 PF03883 Peroxide stress protein YaaA FDN00_14270 PF12706 Beta-lactamase superfamily domain FDN00_14275 PF07687 Peptidase dimerisation domain FDN00_14275 PF01546 Peptidase family M20/M25/M40 FDN00_14285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDN00_14290 PF01842 ACT domain FDN00_14290 PF01817 Chorismate mutase type II FDN00_14290 PF00800 Prephenate dehydratase FDN00_14295 PF00756 Putative esterase FDN00_14300 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_14300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_14300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_14305 PF00375 Sodium:dicarboxylate symporter family FDN00_14315 PF00591 Glycosyl transferase family, a/b domain FDN00_14315 PF02885 Glycosyl transferase family, helical bundle domain FDN00_14320 PF07023 Protein of unknown function (DUF1315) FDN00_14325 PF01513 ATP-NAD kinase FDN00_14330 PF00912 Transglycosylase FDN00_14330 PF14814 Bifunctional transglycosylase second domain FDN00_14330 PF00905 Penicillin binding protein transpeptidase domain FDN00_14340 PF00293 NUDIX domain FDN00_14350 PF08521 Two-component sensor kinase N-terminal FDN00_14350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_14350 PF00512 His Kinase A (phospho-acceptor) domain FDN00_14355 PF00486 Transcriptional regulatory protein, C terminal FDN00_14355 PF00072 Response regulator receiver domain FDN00_14365 PF00437 Type II/IV secretion system protein FDN00_14375 PF18389 TrmO C-terminal domain FDN00_14375 PF01980 tRNA-methyltransferase O FDN00_14380 PF00175 Oxidoreductase NAD-binding domain FDN00_14380 PF00970 Oxidoreductase FAD-binding domain FDN00_14385 PF02567 Phenazine biosynthesis-like protein FDN00_14390 PF00392 Bacterial regulatory proteins, gntR family FDN00_14390 PF00155 Aminotransferase class I and II FDN00_14400 PF00037 4Fe-4S binding domain FDN00_14405 PF00893 Small Multidrug Resistance protein FDN00_14410 PF00005 ABC transporter FDN00_14415 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_14420 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_14425 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN00_14430 PF03466 LysR substrate binding domain FDN00_14430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_14435 PF13533 Biotin-lipoyl like FDN00_14440 PF00873 AcrB/AcrD/AcrF family FDN00_14445 PF02321 Outer membrane efflux protein FDN00_14450 PF00464 Serine hydroxymethyltransferase FDN00_14480 PF00005 ABC transporter FDN00_14485 PF01061 ABC-2 type transporter FDN00_14490 PF14489 QueF-like protein FDN00_14490 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FDN00_14500 PF01098 Cell cycle protein FDN00_14505 PF13406 Transglycosylase SLT domain FDN00_14510 PF03330 Lytic transglycolase FDN00_14510 PF05036 Sporulation related domain FDN00_14530 PF12833 Helix-turn-helix domain FDN00_14540 PF00889 Elongation factor TS FDN00_14545 PF00318 Ribosomal protein S2 FDN00_14550 PF00557 Metallopeptidase family M24 FDN00_14560 PF07690 Major Facilitator Superfamily FDN00_14570 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_14570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDN00_14575 PF04055 Radical SAM superfamily FDN00_14580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_14580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_14580 PF09317 Domain of unknown function (DUF1974) FDN00_14595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FDN00_14595 PF05221 S-adenosyl-L-homocysteine hydrolase FDN00_14600 PF02219 Methylenetetrahydrofolate reductase FDN00_14605 PF04452 RNA methyltransferase FDN00_14615 PF01515 Phosphate acetyl/butaryl transferase FDN00_14615 PF00390 Malic enzyme, N-terminal domain FDN00_14615 PF03949 Malic enzyme, NAD binding domain FDN00_14620 PF01743 Poly A polymerase head domain FDN00_14620 PF12627 Probable RNA and SrmB- binding site of polymerase A FDN00_14625 PF13180 PDZ domain FDN00_14630 PF01784 NIF3 (NGG1p interacting factor 3) FDN00_14635 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FDN00_14635 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FDN00_14660 PF01040 UbiA prenyltransferase family FDN00_14665 PF04345 Chorismate lyase FDN00_14675 PF00854 POT family FDN00_15015 PF00117 Glutamine amidotransferase class-I FDN00_15030 PF02885 Glycosyl transferase family, helical bundle domain FDN00_15030 PF00591 Glycosyl transferase family, a/b domain FDN00_15035 PF00218 Indole-3-glycerol phosphate synthase FDN00_15050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FDN00_15050 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FDN00_15055 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN00_15055 PF01799 [2Fe-2S] binding domain FDN00_15070 PF00144 Beta-lactamase FDN00_15085 PF05675 Protein of unknown function (DUF817) FDN00_15090 PF01208 Uroporphyrinogen decarboxylase (URO-D) FDN00_15100 PF00425 chorismate binding enzyme FDN00_15110 PF00975 Thioesterase domain FDN00_15115 PF00005 ABC transporter FDN00_15115 PF00664 ABC transporter transmembrane region FDN00_15120 PF00005 ABC transporter FDN00_15120 PF00664 ABC transporter transmembrane region FDN00_15130 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDN00_15135 PF00550 Phosphopantetheine attachment site FDN00_15135 PF00857 Isochorismatase family FDN00_15140 PF00501 AMP-binding enzyme FDN00_15140 PF13193 AMP-binding enzyme C-terminal domain FDN00_15150 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FDN00_15155 PF07715 TonB-dependent Receptor Plug Domain FDN00_15155 PF00593 TonB dependent receptor FDN00_15160 PF01497 Periplasmic binding protein FDN00_15165 PF00005 ABC transporter FDN00_15170 PF01032 FecCD transport family FDN00_15175 PF01032 FecCD transport family FDN00_15180 PF00501 AMP-binding enzyme FDN00_15180 PF13193 AMP-binding enzyme C-terminal domain FDN00_15180 PF00550 Phosphopantetheine attachment site FDN00_15180 PF00975 Thioesterase domain FDN00_15180 PF00668 Condensation domain FDN00_15185 PF00668 Condensation domain FDN00_15185 PF13193 AMP-binding enzyme C-terminal domain FDN00_15185 PF00501 AMP-binding enzyme FDN00_15185 PF00550 Phosphopantetheine attachment site FDN00_15195 PF13309 HTH domain FDN00_15195 PF08348 YheO-like PAS domain FDN00_15205 PF17954 Quercetinase C-terminal cupin domain FDN00_15205 PF02678 Pirin FDN00_15225 PF00440 Bacterial regulatory proteins, tetR family FDN00_15230 PF14765 Polyketide synthase dehydratase FDN00_15230 PF00550 Phosphopantetheine attachment site FDN00_15230 PF08659 KR domain FDN00_15230 PF08990 Erythronolide synthase docking FDN00_15230 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN00_15230 PF16197 Ketoacyl-synthetase C-terminal extension FDN00_15230 PF09277 Erythronolide synthase, docking FDN00_15230 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_15230 PF00698 Acyl transferase domain FDN00_15230 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN00_15235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDN00_15235 PF13378 Enolase C-terminal domain-like FDN00_15240 PF00083 Sugar (and other) transporter FDN00_15245 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FDN00_15255 PF00892 EamA-like transporter family FDN00_15275 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDN00_15275 PF01266 FAD dependent oxidoreductase FDN00_15280 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_15280 PF18113 Rubredoxin binding C-terminal domain FDN00_15290 PF00355 Rieske [2Fe-2S] domain FDN00_15290 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN00_15295 PF02028 BCCT, betaine/carnitine/choline family transporter FDN00_15300 PF02028 BCCT, betaine/carnitine/choline family transporter FDN00_15305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_15305 PF03466 LysR substrate binding domain FDN00_15310 PF00324 Amino acid permease FDN00_15315 PF00171 Aldehyde dehydrogenase family FDN00_15330 PF13556 PucR C-terminal helix-turn-helix domain FDN00_15330 PF17853 GGDEF-like domain FDN00_15330 PF06018 CodY GAF-like domain FDN00_15365 PF04328 Selenoprotein, putative FDN00_15370 PF02554 Carbon starvation protein CstA FDN00_15370 PF13722 5TM C-terminal transporter carbon starvation CstA FDN00_15375 PF08207 Elongation factor P (EF-P) KOW-like domain FDN00_15375 PF01132 Elongation factor P (EF-P) OB domain FDN00_15375 PF09285 Elongation factor P, C-terminal FDN00_15380 PF04055 Radical SAM superfamily FDN00_15395 PF01197 Ribosomal protein L31 FDN00_15405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDN00_15410 PF07690 Major Facilitator Superfamily FDN00_15415 PF05362 Lon protease (S16) C-terminal proteolytic domain FDN00_15415 PF13654 AAA domain FDN00_15420 PF03466 LysR substrate binding domain FDN00_15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_15425 PF01551 Peptidase family M23 FDN00_15425 PF01476 LysM domain FDN00_15430 PF01975 Survival protein SurE FDN00_15445 PF07943 Penicillin-binding protein 5, C-terminal domain FDN00_15445 PF00768 D-alanyl-D-alanine carboxypeptidase FDN00_15450 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_15455 PF13344 Haloacid dehalogenase-like hydrolase FDN00_15455 PF00293 NUDIX domain FDN00_15465 PF04356 Protein of unknown function (DUF489) FDN00_15470 PF08328 Adenylosuccinate lyase C-terminal FDN00_15470 PF00206 Lyase FDN00_15485 PF08496 Peptidase family S49 N-terminal FDN00_15485 PF01343 Peptidase family S49 FDN00_15490 PF00005 ABC transporter FDN00_15495 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_15500 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_15505 PF12849 PBP superfamily domain FDN00_15510 PF00324 Amino acid permease FDN00_15515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDN00_15515 PF00205 Thiamine pyrophosphate enzyme, central domain FDN00_15515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDN00_15520 PF01037 Lrp/AsnC ligand binding domain FDN00_15525 PF00171 Aldehyde dehydrogenase family FDN00_15530 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDN00_15535 PF00202 Aminotransferase class-III FDN00_15545 PF17754 MftR C-terminal domain FDN00_15545 PF00440 Bacterial regulatory proteins, tetR family FDN00_15555 PF00487 Fatty acid desaturase FDN00_15560 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN00_15560 PF00970 Oxidoreductase FAD-binding domain FDN00_15560 PF00175 Oxidoreductase NAD-binding domain FDN00_15565 PF00440 Bacterial regulatory proteins, tetR family FDN00_15575 PF18339 RapA N-terminal Tudor like domain 1 FDN00_15575 PF00176 SNF2 family N-terminal domain FDN00_15575 PF12137 RNA polymerase recycling family C-terminal FDN00_15575 PF00271 Helicase conserved C-terminal domain FDN00_15575 PF18337 RapA N-terminal Tudor like domain FDN00_15580 PF00849 RNA pseudouridylate synthase FDN00_15590 PF00202 Aminotransferase class-III FDN00_15595 PF02581 Thiamine monophosphate synthase FDN00_15620 PF00675 Insulinase (Peptidase family M16) FDN00_15620 PF05193 Peptidase M16 inactive domain FDN00_15625 PF02567 Phenazine biosynthesis-like protein FDN00_15635 PF03466 LysR substrate binding domain FDN00_15635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_15640 PF06779 Uncharacterised MFS-type transporter YbfB FDN00_15660 PF00180 Isocitrate/isopropylmalate dehydrogenase FDN00_15665 PF00849 RNA pseudouridylate synthase FDN00_15670 PF03971 Monomeric isocitrate dehydrogenase FDN00_15680 PF00768 D-alanyl-D-alanine carboxypeptidase FDN00_15680 PF07943 Penicillin-binding protein 5, C-terminal domain FDN00_15685 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_15690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN00_15695 PF03441 FAD binding domain of DNA photolyase FDN00_15695 PF00875 DNA photolyase FDN00_15725 PF02350 UDP-N-acetylglucosamine 2-epimerase FDN00_15745 PF01207 Dihydrouridine synthase (Dus) FDN00_15750 PF07759 Protein of unknown function (DUF1615) FDN00_15760 PF00696 Amino acid kinase family FDN00_15760 PF01472 PUA domain FDN00_15765 PF01926 50S ribosome-binding GTPase FDN00_15765 PF01018 GTP1/OBG FDN00_15780 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDN00_15780 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDN00_15785 PF00892 EamA-like transporter family FDN00_15795 PF12344 Ultra-violet resistance protein B FDN00_15795 PF00271 Helicase conserved C-terminal domain FDN00_15795 PF17757 UvrB interaction domain FDN00_15795 PF04851 Type III restriction enzyme, res subunit FDN00_15795 PF02151 UvrB/uvrC motif FDN00_15805 PF17151 Periplasmic sensor domain FDN00_15805 PF00990 Diguanylate cyclase, GGDEF domain FDN00_15845 PF00106 short chain dehydrogenase FDN00_15850 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FDN00_15855 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FDN00_15860 PF02565 Recombination protein O C terminal FDN00_15860 PF11967 Recombination protein O N terminal FDN00_15870 PF01926 50S ribosome-binding GTPase FDN00_15870 PF07650 KH domain FDN00_15875 PF14622 Ribonuclease-III-like FDN00_15875 PF00035 Double-stranded RNA binding motif FDN00_15885 PF10502 Signal peptidase, peptidase S26 FDN00_15890 PF03144 Elongation factor Tu domain 2 FDN00_15890 PF00009 Elongation factor Tu GTP binding domain FDN00_15890 PF00679 Elongation factor G C-terminus FDN00_15890 PF06421 GTP-binding protein LepA C-terminus FDN00_15900 PF13180 PDZ domain FDN00_15905 PF00890 FAD binding domain FDN00_15905 PF02910 Fumarate reductase flavoprotein C-term FDN00_15915 PF02223 Thymidylate kinase FDN00_15920 PF02618 YceG-like family FDN00_15925 PF01063 Amino-transferase class IV FDN00_15940 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_15945 PF00528 Binding-protein-dependent transport system inner membrane component FDN00_15950 PF00005 ABC transporter FDN00_15950 PF12857 TOBE-like domain FDN00_15955 PF03466 LysR substrate binding domain FDN00_15955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_15965 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_15965 PF14602 Hexapeptide repeat of succinyl-transferase FDN00_15965 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FDN00_15975 PF06508 Queuosine biosynthesis protein QueC FDN00_15990 PF00578 AhpC/TSA family FDN00_16005 PF01467 Cytidylyltransferase-like FDN00_16005 PF00293 NUDIX domain FDN00_16010 PF00378 Enoyl-CoA hydratase/isomerase FDN00_16015 PF01784 NIF3 (NGG1p interacting factor 3) FDN00_16020 PF07690 Major Facilitator Superfamily FDN00_16025 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FDN00_16025 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FDN00_16025 PF02769 AIR synthase related protein, C-terminal domain FDN00_16030 PF01966 HD domain FDN00_16035 PF01330 RuvA N terminal domain FDN00_16035 PF07499 RuvA, C-terminal domain FDN00_16040 PF17864 RuvB AAA lid domain FDN00_16040 PF05491 RuvB C-terminal winged helix domain FDN00_16040 PF05496 Holliday junction DNA helicase RuvB P-loop domain FDN00_16050 PF03061 Thioesterase superfamily FDN00_16055 PF01618 MotA/TolQ/ExbB proton channel family FDN00_16060 PF02472 Biopolymer transport protein ExbD/TolR FDN00_16070 PF07676 WD40-like Beta Propeller Repeat FDN00_16070 PF04052 TolB amino-terminal domain FDN00_16075 PF00691 OmpA family FDN00_16085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FDN00_16090 PF00588 SpoU rRNA Methylase family FDN00_16090 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDN00_16120 PF08299 Bacterial dnaA protein helix-turn-helix FDN00_16120 PF00308 Bacterial dnaA protein FDN00_16120 PF11638 DnaA N-terminal domain FDN00_16125 PF01594 AI-2E family transporter FDN00_16130 PF00586 AIR synthase related protein, N-terminal domain FDN00_16130 PF02769 AIR synthase related protein, C-terminal domain FDN00_16135 PF00551 Formyl transferase FDN00_16140 PF12697 Alpha/beta hydrolase family FDN00_16145 PF06965 Na+/H+ antiporter 1 FDN00_16145 PF01343 Peptidase family S49 FDN00_16155 PF00753 Metallo-beta-lactamase superfamily FDN00_16155 PF13567 Domain of unknown function (DUF4131) FDN00_16155 PF03772 Competence protein FDN00_16160 PF00005 ABC transporter FDN00_16165 PF02687 FtsX-like permease family FDN00_16165 PF12704 MacB-like periplasmic core domain FDN00_16175 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FDN00_16185 PF00266 Aminotransferase class-V FDN00_16195 PF13533 Biotin-lipoyl like FDN00_16215 PF00535 Glycosyl transferase family 2 FDN00_16230 PF00521 DNA gyrase/topoisomerase IV, subunit A FDN00_16230 PF03989 DNA gyrase C-terminal domain, beta-propeller FDN00_16235 PF01012 Electron transfer flavoprotein domain FDN00_16235 PF00766 Electron transfer flavoprotein FAD-binding domain FDN00_16240 PF01012 Electron transfer flavoprotein domain FDN00_16245 PF02899 Phage integrase, N-terminal SAM-like domain FDN00_16245 PF00589 Phage integrase family FDN00_16250 PF01810 LysE type translocator FDN00_16255 PF01678 Diaminopimelate epimerase FDN00_16260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FDN00_16260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FDN00_16270 PF00324 Amino acid permease FDN00_16275 PF18073 Rubredoxin metal binding domain FDN00_16285 PF00152 tRNA synthetases class II (D, K and N) FDN00_16290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDN00_16290 PF11890 Domain of unknown function (DUF3410) FDN00_16290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDN00_16295 PF06803 Protein of unknown function (DUF1232) FDN00_16300 PF02634 FdhD/NarQ family FDN00_16305 PF00384 Molybdopterin oxidoreductase FDN00_16310 PF02595 Glycerate kinase family FDN00_16335 PF00881 Nitroreductase family FDN00_16360 PF00550 Phosphopantetheine attachment site FDN00_16360 PF00668 Condensation domain FDN00_16360 PF00975 Thioesterase domain FDN00_16360 PF13193 AMP-binding enzyme C-terminal domain FDN00_16360 PF00501 AMP-binding enzyme FDN00_16375 PF03449 Transcription elongation factor, N-terminal FDN00_16375 PF01272 Transcription elongation factor, GreA/GreB, C-term FDN00_16380 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN00_16380 PF01464 Transglycosylase SLT domain FDN00_16390 PF01171 PP-loop family FDN00_16400 PF01464 Transglycosylase SLT domain FDN00_16405 PF01435 Peptidase family M48 FDN00_16415 PF00873 AcrB/AcrD/AcrF family FDN00_16420 PF03009 Glycerophosphoryl diester phosphodiesterase family FDN00_16430 PF01219 Prokaryotic diacylglycerol kinase FDN00_16435 PF00118 TCP-1/cpn60 chaperonin family FDN00_16440 PF00166 Chaperonin 10 Kd subunit FDN00_16450 PF00149 Calcineurin-like phosphoesterase FDN00_16455 PF00781 Diacylglycerol kinase catalytic domain FDN00_16460 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FDN00_16460 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FDN00_16465 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FDN00_16465 PF01266 FAD dependent oxidoreductase FDN00_16470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FDN00_16470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDN00_16475 PF00083 Sugar (and other) transporter FDN00_16490 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FDN00_16490 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FDN00_16505 PF09423 PhoD-like phosphatase FDN00_16505 PF16655 PhoD-like phosphatase, N-terminal domain FDN00_16525 PF00809 Pterin binding enzyme FDN00_16530 PF06480 FtsH Extracellular FDN00_16530 PF01434 Peptidase family M41 FDN00_16530 PF17862 AAA+ lid domain FDN00_16530 PF00004 ATPase family associated with various cellular activities (AAA) FDN00_16535 PF01728 FtsJ-like methyltransferase FDN00_16540 PF01985 CRS1 / YhbY (CRM) domain FDN00_16555 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FDN00_16555 PF00117 Glutamine amidotransferase class-I FDN00_16560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN00_16560 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FDN00_16560 PF02142 MGS-like domain FDN00_16565 PF01272 Transcription elongation factor, GreA/GreB, C-term FDN00_16565 PF03449 Transcription elongation factor, N-terminal FDN00_16570 PF00132 Bacterial transferase hexapeptide (six repeats) FDN00_16575 PF00582 Universal stress protein family FDN00_16580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDN00_16590 PF09587 Bacterial capsule synthesis protein PGA_cap FDN00_16645 PF04228 Putative neutral zinc metallopeptidase FDN00_16650 PF05661 Protein of unknown function (DUF808) FDN00_16655 PF00579 tRNA synthetases class I (W and Y) FDN00_16660 PF02629 CoA binding domain FDN00_16660 PF00549 CoA-ligase FDN00_16665 PF08442 ATP-grasp domain FDN00_16665 PF00549 CoA-ligase FDN00_16670 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_16670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDN00_16675 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDN00_16675 PF02817 e3 binding domain FDN00_16675 PF00364 Biotin-requiring enzyme FDN00_16680 PF16870 2-oxoglutarate dehydrogenase C-terminal FDN00_16680 PF16078 2-oxoglutarate dehydrogenase N-terminus FDN00_16680 PF00676 Dehydrogenase E1 component FDN00_16680 PF02779 Transketolase, pyrimidine binding domain FDN00_16695 PF13085 2Fe-2S iron-sulfur cluster binding domain FDN00_16700 PF00890 FAD binding domain FDN00_16700 PF02910 Fumarate reductase flavoprotein C-term FDN00_16705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDN00_16710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDN00_16715 PF00285 Citrate synthase, C-terminal domain FDN00_16745 PF04542 Sigma-70 region 2 FDN00_16745 PF04539 Sigma-70 region 3 FDN00_16745 PF00140 Sigma-70 factor, region 1.2 FDN00_16745 PF04545 Sigma-70, region 4 FDN00_16745 PF03979 Sigma-70 factor, region 1.1 FDN00_16745 PF04546 Sigma-70, non-essential region FDN00_16750 PF04359 Protein of unknown function (DUF493) FDN00_16755 PF03099 Biotin/lipoate A/B protein ligase family FDN00_16765 PF00465 Iron-containing alcohol dehydrogenase FDN00_16770 PF13520 Amino acid permease FDN00_16785 PF00588 SpoU rRNA Methylase family FDN00_16790 PF10414 Sirohaem synthase dimerisation region FDN00_16790 PF14824 Sirohaem biosynthesis protein central FDN00_16790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDN00_16795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDN00_16795 PF02403 Seryl-tRNA synthetase N-terminal domain FDN00_16805 PF03548 Outer membrane lipoprotein carrier protein LolA FDN00_16810 PF01016 Ribosomal L27 protein FDN00_16815 PF00829 Ribosomal prokaryotic L21 protein FDN00_16825 PF00348 Polyprenyl synthetase FDN00_16835 PF01569 PAP2 superfamily FDN00_16840 PF00529 HlyD membrane-fusion protein of T1SS FDN00_16840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN00_16845 PF00873 AcrB/AcrD/AcrF family FDN00_16850 PF02321 Outer membrane efflux protein FDN00_16855 PF01906 Putative heavy-metal-binding FDN00_16860 PF01906 Putative heavy-metal-binding FDN00_16880 PF00133 tRNA synthetases class I (I, L, M and V) FDN00_16880 PF10458 Valyl tRNA synthetase tRNA binding arm FDN00_16880 PF08264 Anticodon-binding domain of tRNA FDN00_16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_16900 PF03466 LysR substrate binding domain FDN00_16910 PF00909 Ammonium Transporter Family FDN00_16920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_16920 PF08521 Two-component sensor kinase N-terminal FDN00_16920 PF00512 His Kinase A (phospho-acceptor) domain FDN00_16925 PF00486 Transcriptional regulatory protein, C terminal FDN00_16925 PF00072 Response regulator receiver domain FDN00_16930 PF08019 Phosphoethanolamine transferase EptA/EptB FDN00_16930 PF00884 Sulfatase FDN00_16950 PF01734 Patatin-like phospholipase FDN00_16960 PF01145 SPFH domain / Band 7 family FDN00_16965 PF04237 YjbR FDN00_16970 PF00348 Polyprenyl synthetase FDN00_16975 PF04303 PrpF protein FDN00_16980 PF00324 Amino acid permease FDN00_16990 PF01965 DJ-1/PfpI family FDN00_16995 PF16197 Ketoacyl-synthetase C-terminal extension FDN00_16995 PF09277 Erythronolide synthase, docking FDN00_16995 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN00_16995 PF08990 Erythronolide synthase docking FDN00_16995 PF00550 Phosphopantetheine attachment site FDN00_16995 PF08240 Alcohol dehydrogenase GroES-like domain FDN00_16995 PF08659 KR domain FDN00_16995 PF14765 Polyketide synthase dehydratase FDN00_16995 PF00698 Acyl transferase domain FDN00_16995 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN00_17000 PF06719 AraC-type transcriptional regulator N-terminus FDN00_17000 PF12833 Helix-turn-helix domain FDN00_17005 PF02673 Bacitracin resistance protein BacA FDN00_17025 PF02525 Flavodoxin-like fold FDN00_17040 PF01507 Phosphoadenosine phosphosulfate reductase family FDN00_17045 PF06974 Protein of unknown function (DUF1298) FDN00_17045 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FDN00_17055 PF00575 S1 RNA binding domain FDN00_17055 PF10150 Ribonuclease E/G family FDN00_17060 PF02545 Maf-like protein FDN00_17065 PF04093 rod shape-determining protein MreD FDN00_17070 PF04085 rod shape-determining protein MreC FDN00_17080 PF02686 Glu-tRNAGln amidotransferase C subunit FDN00_17085 PF01425 Amidase FDN00_17090 PF02637 GatB domain FDN00_17090 PF02934 GatB/GatE catalytic domain FDN00_17120 PF05992 SbmA/BacA-like family FDN00_17125 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_17125 PF13291 ACT domain FDN00_17130 PF01734 Patatin-like phospholipase FDN00_17135 PF01235 Sodium:alanine symporter family FDN00_17150 PF00881 Nitroreductase family FDN00_17155 PF07690 Major Facilitator Superfamily FDN00_17160 PF12805 FUSC-like inner membrane protein yccS FDN00_17170 PF00175 Oxidoreductase NAD-binding domain FDN00_17170 PF00258 Flavodoxin FDN00_17170 PF00667 FAD binding domain FDN00_17185 PF17969 L,D-transpeptidase C-terminal domain FDN00_17185 PF03734 L,D-transpeptidase catalytic domain FDN00_17190 PF04304 Protein of unknown function (DUF454) FDN00_17200 PF08085 Entericidin EcnA/B family FDN00_17205 PF01546 Peptidase family M20/M25/M40 FDN00_17205 PF07687 Peptidase dimerisation domain FDN00_17215 PF01584 CheW-like domain FDN00_17215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_17215 PF01627 Hpt domain FDN00_17215 PF00072 Response regulator receiver domain FDN00_17220 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FDN00_17220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDN00_17225 PF01584 CheW-like domain FDN00_17230 PF00072 Response regulator receiver domain FDN00_17235 PF00072 Response regulator receiver domain FDN00_17250 PF00873 AcrB/AcrD/AcrF family FDN00_17255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDN00_17255 PF03129 Anticodon binding domain FDN00_17255 PF04073 Aminoacyl-tRNA editing domain FDN00_17260 PF07411 Domain of unknown function (DUF1508) FDN00_17265 PF03831 PhnA domain FDN00_17265 PF08274 PhnA Zinc-Ribbon FDN00_17270 PF04343 Protein of unknown function, DUF488 FDN00_17280 PF01571 Aminomethyltransferase folate-binding domain FDN00_17285 PF13098 Thioredoxin-like domain FDN00_17285 PF10411 Disulfide bond isomerase protein N-terminus FDN00_17295 PF03547 Membrane transport protein FDN00_17300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN00_17315 PF07715 TonB-dependent Receptor Plug Domain FDN00_17315 PF00593 TonB dependent receptor FDN00_17320 PF02245 Methylpurine-DNA glycosylase (MPG) FDN00_17325 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FDN00_17325 PF06827 Zinc finger found in FPG and IleRS FDN00_17325 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FDN00_17340 PF01741 Large-conductance mechanosensitive channel, MscL FDN00_17350 PF00860 Permease family FDN00_17355 PF05175 Methyltransferase small domain FDN00_17355 PF08468 Methyltransferase small domain N-terminal FDN00_17360 PF00324 Amino acid permease FDN00_17365 PF01139 tRNA-splicing ligase RtcB FDN00_17370 PF13505 Outer membrane protein beta-barrel domain FDN00_17370 PF00691 OmpA family FDN00_17380 PF00108 Thiolase, N-terminal domain FDN00_17380 PF02803 Thiolase, C-terminal domain FDN00_17390 PF00893 Small Multidrug Resistance protein FDN00_17400 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDN00_17400 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDN00_17405 PF01011 PQQ enzyme repeat FDN00_17410 PF04966 Carbohydrate-selective porin, OprB family FDN00_17415 PF02515 CoA-transferase family III FDN00_17420 PF02311 AraC-like ligand binding domain FDN00_17420 PF12833 Helix-turn-helix domain FDN00_17425 PF00108 Thiolase, N-terminal domain FDN00_17425 PF02803 Thiolase, C-terminal domain FDN00_17430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN00_17430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN00_17430 PF00378 Enoyl-CoA hydratase/isomerase FDN00_17455 PF03006 Haemolysin-III related FDN00_17460 PF07690 Major Facilitator Superfamily FDN00_17460 PF00083 Sugar (and other) transporter FDN00_17470 PF07516 SecA Wing and Scaffold domain FDN00_17470 PF02810 SEC-C motif FDN00_17470 PF07517 SecA DEAD-like domain FDN00_17470 PF01043 SecA preprotein cross-linking domain FDN00_17475 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDN00_17475 PF00578 AhpC/TSA family FDN00_17480 PF00753 Metallo-beta-lactamase superfamily FDN00_17495 PF08245 Mur ligase middle domain FDN00_17495 PF02875 Mur ligase family, glutamate ligase domain FDN00_17500 PF01039 Carboxyl transferase domain FDN00_17505 PF00290 Tryptophan synthase alpha chain FDN00_17530 PF00291 Pyridoxal-phosphate dependent enzyme FDN00_17535 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FDN00_17540 PF00593 TonB dependent receptor FDN00_17540 PF07715 TonB-dependent Receptor Plug Domain FDN00_17545 PF01923 Cobalamin adenosyltransferase FDN00_17565 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FDN00_17570 PF00072 Response regulator receiver domain FDN00_17570 PF00486 Transcriptional regulatory protein, C terminal FDN00_17575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_17575 PF00672 HAMP domain FDN00_17575 PF00512 His Kinase A (phospho-acceptor) domain FDN00_17585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_17585 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_17585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_17585 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDN00_17590 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDN00_17590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_17590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_17590 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_17595 PF03466 LysR substrate binding domain FDN00_17600 PF00043 Glutathione S-transferase, C-terminal domain FDN00_17600 PF02798 Glutathione S-transferase, N-terminal domain FDN00_17605 PF06146 Phosphate-starvation-inducible E FDN00_17625 PF07715 TonB-dependent Receptor Plug Domain FDN00_17625 PF00593 TonB dependent receptor FDN00_17635 PF02938 GAD domain FDN00_17635 PF01336 OB-fold nucleic acid binding domain FDN00_17635 PF00152 tRNA synthetases class II (D, K and N) FDN00_17640 PF17101 Stealth protein CR1, conserved region 1 FDN00_17640 PF11380 Stealth protein CR2, conserved region 2 FDN00_17640 PF17102 Stealth protein CR3, conserved region 3 FDN00_17665 PF00534 Glycosyl transferases group 1 FDN00_17665 PF13439 Glycosyltransferase Family 4 FDN00_17670 PF00535 Glycosyl transferase family 2 FDN00_17675 PF01522 Polysaccharide deacetylase FDN00_17690 PF01063 Amino-transferase class IV FDN00_17695 PF08335 GlnD PII-uridylyltransferase FDN00_17695 PF03710 Glutamate-ammonia ligase adenylyltransferase FDN00_17700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN00_17700 PF07689 KaiB domain FDN00_17700 PF00512 His Kinase A (phospho-acceptor) domain FDN00_17710 PF02547 Queuosine biosynthesis protein FDN00_17725 PF01702 Queuine tRNA-ribosyltransferase FDN00_17730 PF02699 Preprotein translocase subunit FDN00_17735 PF07549 SecD/SecF GG Motif FDN00_17735 PF02355 Protein export membrane protein FDN00_17735 PF13721 SecD export protein N-terminal TM region FDN00_17740 PF07549 SecD/SecF GG Motif FDN00_17740 PF02355 Protein export membrane protein FDN00_17745 PF04127 DNA / pantothenate metabolism flavoprotein FDN00_17745 PF02441 Flavoprotein FDN00_17750 PF04002 RadC-like JAB domain FDN00_17755 PF01062 Bestrophin, RFP-TM, chloride channel FDN00_17760 PF02811 PHP domain FDN00_17765 PF04279 Intracellular septation protein A FDN00_17770 PF03795 YCII-related domain FDN00_17780 PF01266 FAD dependent oxidoreductase FDN00_17780 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDN00_17790 PF04461 Protein of unknown function (DUF520) FDN00_17800 PF03061 Thioesterase superfamily FDN00_17805 PF00085 Thioredoxin FDN00_17810 PF00561 alpha/beta hydrolase fold FDN00_17815 PF00753 Metallo-beta-lactamase superfamily FDN00_17815 PF04273 Putative phosphatase (DUF442) FDN00_17825 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_17825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDN00_17860 PF00990 Diguanylate cyclase, GGDEF domain FDN00_17860 PF17152 Periplasmic sensor domain FDN00_17865 PF00691 OmpA family FDN00_17865 PF01389 OmpA-like transmembrane domain FDN00_17870 PF10518 TAT (twin-arginine translocation) pathway signal sequence FDN00_17870 PF00149 Calcineurin-like phosphoesterase FDN00_17875 PF13091 PLD-like domain FDN00_17885 PF01926 50S ribosome-binding GTPase FDN00_17885 PF13167 GTP-binding GTPase N-terminal FDN00_17885 PF16360 GTP-binding GTPase Middle Region FDN00_17905 PF00149 Calcineurin-like phosphoesterase FDN00_17910 PF00398 Ribosomal RNA adenine dimethylase FDN00_17915 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FDN00_17920 PF00572 Ribosomal protein L13 FDN00_17925 PF00380 Ribosomal protein S9/S16 FDN00_17930 PF00043 Glutathione S-transferase, C-terminal domain FDN00_17930 PF13417 Glutathione S-transferase, N-terminal domain FDN00_17935 PF04386 Stringent starvation protein B FDN00_17945 PF00289 Biotin carboxylase, N-terminal domain FDN00_17945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN00_17945 PF00364 Biotin-requiring enzyme FDN00_17945 PF02785 Biotin carboxylase C-terminal domain FDN00_17955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_17955 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_17955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_17960 PF01039 Carboxyl transferase domain FDN00_17975 PF00440 Bacterial regulatory proteins, tetR family FDN00_17975 PF17932 Tetracyclin repressor-like, C-terminal domain FDN00_17980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_17980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_17980 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_18025 PF01066 CDP-alcohol phosphatidyltransferase FDN00_18030 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FDN00_18050 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FDN00_18050 PF00056 lactate/malate dehydrogenase, NAD binding domain FDN00_18060 PF01464 Transglycosylase SLT domain FDN00_18060 PF10145 Phage-related minor tail protein FDN00_18060 PF01551 Peptidase family M23 FDN00_18065 PF00919 Uncharacterized protein family UPF0004 FDN00_18065 PF04055 Radical SAM superfamily FDN00_18065 PF01938 TRAM domain FDN00_18070 PF02562 PhoH-like protein FDN00_18075 PF02130 Uncharacterized protein family UPF0054 FDN00_18100 PF03358 NADPH-dependent FMN reductase FDN00_18105 PF03631 Virulence factor BrkB FDN00_18110 PF00892 EamA-like transporter family FDN00_18115 PF12833 Helix-turn-helix domain FDN00_18120 PF01557 Fumarylacetoacetate (FAA) hydrolase family FDN00_18160 PF17876 Cold shock domain FDN00_18160 PF08461 Ribonuclease R winged-helix domain FDN00_18160 PF08206 Ribonuclease B OB domain FDN00_18160 PF00773 RNB domain FDN00_18160 PF00575 S1 RNA binding domain FDN00_18165 PF01432 Peptidase family M3 FDN00_18170 PF09526 Probable metal-binding protein (DUF2387) FDN00_18200 PF03937 Flavinator of succinate dehydrogenase FDN00_18205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_18205 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_18205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_18210 PF00743 Flavin-binding monooxygenase-like FDN00_18215 PF01196 Ribosomal protein L17 FDN00_18220 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FDN00_18220 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FDN00_18220 PF01000 RNA polymerase Rpb3/RpoA insert domain FDN00_18225 PF00163 Ribosomal protein S4/S9 N-terminal domain FDN00_18225 PF01479 S4 domain FDN00_18230 PF00411 Ribosomal protein S11 FDN00_18235 PF00416 Ribosomal protein S13/S18 FDN00_18240 PF00444 Ribosomal protein L36 FDN00_18245 PF00344 SecY translocase FDN00_18250 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FDN00_18255 PF00327 Ribosomal protein L30p/L7e FDN00_18260 PF03719 Ribosomal protein S5, C-terminal domain FDN00_18260 PF00333 Ribosomal protein S5, N-terminal domain FDN00_18265 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FDN00_18270 PF00347 Ribosomal protein L6 FDN00_18275 PF00410 Ribosomal protein S8 FDN00_18280 PF00253 Ribosomal protein S14p/S29e FDN00_18285 PF00673 ribosomal L5P family C-terminus FDN00_18285 PF00281 Ribosomal protein L5 FDN00_18290 PF00467 KOW motif FDN00_18290 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FDN00_18295 PF00238 Ribosomal protein L14p/L23e FDN00_18300 PF00366 Ribosomal protein S17 FDN00_18305 PF00831 Ribosomal L29 protein FDN00_18310 PF00252 Ribosomal protein L16p/L10e FDN00_18315 PF07650 KH domain FDN00_18315 PF00189 Ribosomal protein S3, C-terminal domain FDN00_18320 PF00237 Ribosomal protein L22p/L17e FDN00_18325 PF00203 Ribosomal protein S19 FDN00_18330 PF03947 Ribosomal Proteins L2, C-terminal domain FDN00_18330 PF00181 Ribosomal Proteins L2, RNA binding domain FDN00_18335 PF00276 Ribosomal protein L23 FDN00_18340 PF00573 Ribosomal protein L4/L1 family FDN00_18345 PF00297 Ribosomal protein L3 FDN00_18350 PF00338 Ribosomal protein S10p/S20e FDN00_18355 PF00117 Glutamine amidotransferase class-I FDN00_18360 PF01053 Cys/Met metabolism PLP-dependent enzyme FDN00_18365 PF05872 Bacterial protein of unknown function (DUF853) FDN00_18370 PF00042 Globin FDN00_18370 PF00175 Oxidoreductase NAD-binding domain FDN00_18370 PF00970 Oxidoreductase FAD-binding domain FDN00_18375 PF02082 Transcriptional regulator FDN00_18380 PF01926 50S ribosome-binding GTPase FDN00_18390 PF00375 Sodium:dicarboxylate symporter family FDN00_18400 PF01553 Acyltransferase FDN00_18415 PF00271 Helicase conserved C-terminal domain FDN00_18415 PF00270 DEAD/DEAH box helicase FDN00_18415 PF17191 RecG wedge domain FDN00_18420 PF00156 Phosphoribosyl transferase domain FDN00_18425 PF00293 NUDIX domain FDN00_18430 PF03641 Possible lysine decarboxylase FDN00_18435 PF01544 CorA-like Mg2+ transporter protein FDN00_18445 PF05494 MlaC protein FDN00_18455 PF02405 Permease MlaE FDN00_18460 PF00005 ABC transporter FDN00_18470 PF12343 Cold shock protein DEAD box A FDN00_18470 PF00271 Helicase conserved C-terminal domain FDN00_18470 PF03880 DbpA RNA binding domain FDN00_18470 PF00270 DEAD/DEAH box helicase FDN00_18475 PF00459 Inositol monophosphatase family FDN00_18480 PF02780 Transketolase, C-terminal domain FDN00_18480 PF02779 Transketolase, pyrimidine binding domain FDN00_18480 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FDN00_18485 PF00925 GTP cyclohydrolase II FDN00_18490 PF01218 Coproporphyrinogen III oxidase FDN00_18495 PF01488 Shikimate / quinate 5-dehydrogenase FDN00_18495 PF08501 Shikimate dehydrogenase substrate binding domain FDN00_18495 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FDN00_18510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN00_18510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN00_18510 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDN00_18510 PF02770 Acyl-CoA dehydrogenase, middle domain FDN00_18520 PF04024 PspC domain FDN00_18525 PF00571 CBS domain FDN00_18550 PF02091 Glycyl-tRNA synthetase alpha subunit FDN00_18555 PF05746 DALR anticodon binding domain FDN00_18555 PF02092 Glycyl-tRNA synthetase beta subunit FDN00_18565 PF00892 EamA-like transporter family FDN00_18570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN00_18570 PF03466 LysR substrate binding domain FDN00_18605 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FDN00_18610 PF04996 Succinylarginine dihydrolase FDN00_18615 PF00171 Aldehyde dehydrogenase family FDN00_18620 PF04958 Arginine N-succinyltransferase beta subunit FDN00_18625 PF00202 Aminotransferase class-III FDN00_18630 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDN00_18630 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDN00_18635 PF00324 Amino acid permease FDN00_18665 PF13614 AAA domain FDN00_18670 PF01594 AI-2E family transporter FDN00_18675 PF00080 Copper/zinc superoxide dismutase (SODC) FDN00_18680 PF12805 FUSC-like inner membrane protein yccS FDN00_18685 PF07690 Major Facilitator Superfamily FDN00_18695 PF02525 Flavodoxin-like fold FDN00_18700 PF03992 Antibiotic biosynthesis monooxygenase FDN00_18710 PF02913 FAD linked oxidases, C-terminal domain FDN00_18710 PF01565 FAD binding domain FDN00_18715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDN00_18715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDN00_18720 PF00892 EamA-like transporter family FDN00_18725 PF00892 EamA-like transporter family FDN00_18735 PF01925 Sulfite exporter TauE/SafE FDN00_18740 PF01509 TruB family pseudouridylate synthase (N terminal domain) FDN00_18740 PF09157 Pseudouridine synthase II TruB, C-terminal FDN00_18740 PF16198 tRNA pseudouridylate synthase B C-terminal domain FDN00_18745 PF03280 Proteobacterial lipase chaperone protein FDN00_18750 PF00561 alpha/beta hydrolase fold FDN00_18755 PF01245 Ribosomal protein L19 FDN00_18760 PF01746 tRNA (Guanine-1)-methyltransferase FDN00_18765 PF05239 PRC-barrel domain FDN00_18765 PF01782 RimM N-terminal domain FDN00_18810 PF02401 LytB protein FDN00_18815 PF00625 Guanylate kinase FDN00_18820 PF01192 RNA polymerase Rpb6 FDN00_18830 PF02824 TGS domain FDN00_18830 PF13291 ACT domain FDN00_18830 PF04607 Region found in RelA / SpoT proteins FDN00_18835 PF01042 Endoribonuclease L-PSP FDN00_18840 PF04324 BFD-like [2Fe-2S] binding domain FDN00_18845 PF00210 Ferritin-like domain FDN00_18855 PF11846 Virulence factor membrane-bound polymerase, C-terminal FDN00_18855 PF15864 Protein glycosylation ligase FDN00_18855 PF04932 O-Antigen ligase FDN00_18865 PF07963 Prokaryotic N-terminal methylation motif FDN00_18865 PF00114 Pilin (bacterial filament) FDN00_18875 PF04536 TPM domain FDN00_18880 PF04011 LemA family FDN00_18890 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FDN00_18890 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN00_18895 PF00310 Glutamine amidotransferases class-II FDN00_18895 PF04898 Glutamate synthase central domain FDN00_18895 PF01645 Conserved region in glutamate synthase FDN00_18895 PF01493 GXGXG motif FDN00_18905 PF01761 3-dehydroquinate synthase FDN00_18910 PF01202 Shikimate kinase FDN00_18915 PF11741 AMIN domain FDN00_18915 PF00263 Bacterial type II and III secretion system protein FDN00_18915 PF03958 Bacterial type II/III secretion system short domain FDN00_18915 PF07660 Secretin and TonB N terminus short domain FDN00_18940 PF17092 Penicillin-binding protein OB-like domain FDN00_18940 PF00905 Penicillin binding protein transpeptidase domain FDN00_18940 PF00912 Transglycosylase FDN00_18955 PF00665 Integrase core domain FDN00_19010 PF00905 Penicillin binding protein transpeptidase domain FDN00_19035 PF00953 Glycosyl transferase family 4 FDN00_19040 PF02875 Mur ligase family, glutamate ligase domain FDN00_19040 PF08245 Mur ligase middle domain FDN00_19040 PF01225 Mur ligase family, catalytic domain FDN00_19045 PF08245 Mur ligase middle domain FDN00_19045 PF02875 Mur ligase family, glutamate ligase domain FDN00_19045 PF01225 Mur ligase family, catalytic domain FDN00_19050 PF00905 Penicillin binding protein transpeptidase domain FDN00_19050 PF03717 Penicillin-binding Protein dimerisation domain FDN00_19075 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDN00_19090 PF00324 Amino acid permease FDN00_19120 PF04403 Paraquat-inducible protein A FDN00_19125 PF02470 MlaD protein FDN00_19135 PF01177 Asp/Glu/Hydantoin racemase FDN00_19145 PF13610 DDE domain FDN00_19200 PF08946 Osmosensory transporter coiled coil FDN00_19200 PF00083 Sugar (and other) transporter FDN00_19225 PF00155 Aminotransferase class I and II FDN00_19230 PF06826 Predicted Permease Membrane Region FDN00_19230 PF02080 TrkA-C domain FDN00_19235 PF07715 TonB-dependent Receptor Plug Domain FDN00_19235 PF00593 TonB dependent receptor FDN00_19255 PF05973 Phage derived protein Gp49-like (DUF891) FDN00_19270 PF01051 Initiator Replication protein FDN00_19275 PF03389 MobA/MobL family