locus-tag class description FDF35_00065 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDF35_00235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDF35_00240 PF00582 Universal stress protein family FDF35_00245 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_00250 PF01042 Endoribonuclease L-PSP FDF35_00255 PF00440 Bacterial regulatory proteins, tetR family FDF35_00260 PF01272 Transcription elongation factor, GreA/GreB, C-term FDF35_00260 PF03449 Transcription elongation factor, N-terminal FDF35_00265 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FDF35_00265 PF02142 MGS-like domain FDF35_00265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDF35_00270 PF00117 Glutamine amidotransferase class-I FDF35_00270 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FDF35_00285 PF01985 CRS1 / YhbY (CRM) domain FDF35_00290 PF01728 FtsJ-like methyltransferase FDF35_00295 PF06480 FtsH Extracellular FDF35_00295 PF17862 AAA+ lid domain FDF35_00295 PF00004 ATPase family associated with various cellular activities (AAA) FDF35_00295 PF01434 Peptidase family M41 FDF35_00300 PF00809 Pterin binding enzyme FDF35_00335 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FDF35_00335 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FDF35_00350 PF00083 Sugar (and other) transporter FDF35_00355 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FDF35_00355 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDF35_00360 PF01266 FAD dependent oxidoreductase FDF35_00360 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FDF35_00365 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FDF35_00365 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FDF35_00370 PF00781 Diacylglycerol kinase catalytic domain FDF35_00375 PF00149 Calcineurin-like phosphoesterase FDF35_00380 PF00166 Chaperonin 10 Kd subunit FDF35_00385 PF00118 TCP-1/cpn60 chaperonin family FDF35_00390 PF01219 Prokaryotic diacylglycerol kinase FDF35_00400 PF03009 Glycerophosphoryl diester phosphodiesterase family FDF35_00405 PF00873 AcrB/AcrD/AcrF family FDF35_00415 PF01435 Peptidase family M48 FDF35_00430 PF01171 PP-loop family FDF35_00440 PF01464 Transglycosylase SLT domain FDF35_00440 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDF35_00445 PF01272 Transcription elongation factor, GreA/GreB, C-term FDF35_00445 PF03449 Transcription elongation factor, N-terminal FDF35_00460 PF00975 Thioesterase domain FDF35_00460 PF00550 Phosphopantetheine attachment site FDF35_00460 PF00668 Condensation domain FDF35_00460 PF13193 AMP-binding enzyme C-terminal domain FDF35_00460 PF00501 AMP-binding enzyme FDF35_00485 PF00881 Nitroreductase family FDF35_00500 PF02595 Glycerate kinase family FDF35_00505 PF00384 Molybdopterin oxidoreductase FDF35_00510 PF02634 FdhD/NarQ family FDF35_00515 PF06803 Protein of unknown function (DUF1232) FDF35_00520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDF35_00520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDF35_00520 PF11890 Domain of unknown function (DUF3410) FDF35_00525 PF00152 tRNA synthetases class II (D, K and N) FDF35_00535 PF18073 Rubredoxin metal binding domain FDF35_00540 PF01235 Sodium:alanine symporter family FDF35_00545 PF00324 Amino acid permease FDF35_00555 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FDF35_00555 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FDF35_00565 PF00561 alpha/beta hydrolase fold FDF35_00570 PF01810 LysE type translocator FDF35_00575 PF00589 Phage integrase family FDF35_00575 PF02899 Phage integrase, N-terminal SAM-like domain FDF35_00580 PF01012 Electron transfer flavoprotein domain FDF35_00585 PF00766 Electron transfer flavoprotein FAD-binding domain FDF35_00585 PF01012 Electron transfer flavoprotein domain FDF35_00590 PF00521 DNA gyrase/topoisomerase IV, subunit A FDF35_00590 PF03989 DNA gyrase C-terminal domain, beta-propeller FDF35_00605 PF00535 Glycosyl transferase family 2 FDF35_00625 PF13533 Biotin-lipoyl like FDF35_00635 PF00266 Aminotransferase class-V FDF35_00645 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FDF35_00655 PF02687 FtsX-like permease family FDF35_00655 PF12704 MacB-like periplasmic core domain FDF35_00660 PF00005 ABC transporter FDF35_00665 PF00753 Metallo-beta-lactamase superfamily FDF35_00665 PF13567 Domain of unknown function (DUF4131) FDF35_00665 PF03772 Competence protein FDF35_00675 PF06965 Na+/H+ antiporter 1 FDF35_00675 PF01343 Peptidase family S49 FDF35_00680 PF12697 Alpha/beta hydrolase family FDF35_00685 PF00551 Formyl transferase FDF35_00690 PF02769 AIR synthase related protein, C-terminal domain FDF35_00690 PF00586 AIR synthase related protein, N-terminal domain FDF35_00695 PF01594 AI-2E family transporter FDF35_00700 PF00308 Bacterial dnaA protein FDF35_00700 PF11638 DnaA N-terminal domain FDF35_00700 PF08299 Bacterial dnaA protein helix-turn-helix FDF35_00730 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDF35_00730 PF00588 SpoU rRNA Methylase family FDF35_00735 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FDF35_00745 PF00691 OmpA family FDF35_00750 PF07676 WD40-like Beta Propeller Repeat FDF35_00750 PF04052 TolB amino-terminal domain FDF35_00760 PF02472 Biopolymer transport protein ExbD/TolR FDF35_00765 PF01618 MotA/TolQ/ExbB proton channel family FDF35_00770 PF03061 Thioesterase superfamily FDF35_00780 PF05491 RuvB C-terminal winged helix domain FDF35_00780 PF05496 Holliday junction DNA helicase RuvB P-loop domain FDF35_00780 PF17864 RuvB AAA lid domain FDF35_00785 PF07499 RuvA, C-terminal domain FDF35_00785 PF01330 RuvA N terminal domain FDF35_00795 PF02769 AIR synthase related protein, C-terminal domain FDF35_00795 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FDF35_00795 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FDF35_00800 PF07690 Major Facilitator Superfamily FDF35_00805 PF01784 NIF3 (NGG1p interacting factor 3) FDF35_00810 PF00378 Enoyl-CoA hydratase/isomerase FDF35_00825 PF00578 AhpC/TSA family FDF35_00840 PF06508 Queuosine biosynthesis protein QueC FDF35_00850 PF14602 Hexapeptide repeat of succinyl-transferase FDF35_00850 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_00850 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FDF35_00860 PF03466 LysR substrate binding domain FDF35_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_00865 PF00005 ABC transporter FDF35_00865 PF12857 TOBE-like domain FDF35_00870 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_00875 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_00890 PF01063 Amino-transferase class IV FDF35_00895 PF02618 YceG-like family FDF35_00900 PF02223 Thymidylate kinase FDF35_00910 PF02910 Fumarate reductase flavoprotein C-term FDF35_00910 PF00890 FAD binding domain FDF35_00915 PF13180 PDZ domain FDF35_00925 PF00679 Elongation factor G C-terminus FDF35_00925 PF00009 Elongation factor Tu GTP binding domain FDF35_00925 PF06421 GTP-binding protein LepA C-terminus FDF35_00925 PF03144 Elongation factor Tu domain 2 FDF35_00930 PF10502 Signal peptidase, peptidase S26 FDF35_00940 PF14622 Ribonuclease-III-like FDF35_00940 PF00035 Double-stranded RNA binding motif FDF35_00945 PF01926 50S ribosome-binding GTPase FDF35_00945 PF07650 KH domain FDF35_00955 PF11967 Recombination protein O N terminal FDF35_00955 PF02565 Recombination protein O C terminal FDF35_00960 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FDF35_00965 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FDF35_00970 PF00106 short chain dehydrogenase FDF35_01000 PF00012 Hsp70 protein FDF35_01020 PF00990 Diguanylate cyclase, GGDEF domain FDF35_01020 PF17151 Periplasmic sensor domain FDF35_01030 PF12344 Ultra-violet resistance protein B FDF35_01030 PF02151 UvrB/uvrC motif FDF35_01030 PF00271 Helicase conserved C-terminal domain FDF35_01030 PF04851 Type III restriction enzyme, res subunit FDF35_01030 PF17757 UvrB interaction domain FDF35_01040 PF00892 EamA-like transporter family FDF35_01045 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDF35_01045 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDF35_01060 PF01018 GTP1/OBG FDF35_01060 PF01926 50S ribosome-binding GTPase FDF35_01065 PF00696 Amino acid kinase family FDF35_01065 PF01472 PUA domain FDF35_01075 PF07759 Protein of unknown function (DUF1615) FDF35_01100 PF02350 UDP-N-acetylglucosamine 2-epimerase FDF35_01130 PF00875 DNA photolyase FDF35_01130 PF03441 FAD binding domain of DNA photolyase FDF35_01135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDF35_01140 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_01145 PF00768 D-alanyl-D-alanine carboxypeptidase FDF35_01145 PF07943 Penicillin-binding protein 5, C-terminal domain FDF35_01155 PF03971 Monomeric isocitrate dehydrogenase FDF35_01160 PF00849 RNA pseudouridylate synthase FDF35_01220 PF00717 Peptidase S24-like FDF35_01405 PF00589 Phage integrase family FDF35_01405 PF13356 Arm DNA-binding domain FDF35_01415 PF00180 Isocitrate/isopropylmalate dehydrogenase FDF35_01435 PF06779 Uncharacterised MFS-type transporter YbfB FDF35_01440 PF03466 LysR substrate binding domain FDF35_01440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_01450 PF02567 Phenazine biosynthesis-like protein FDF35_01455 PF05193 Peptidase M16 inactive domain FDF35_01455 PF00675 Insulinase (Peptidase family M16) FDF35_01480 PF02581 Thiamine monophosphate synthase FDF35_01485 PF00202 Aminotransferase class-III FDF35_01495 PF00849 RNA pseudouridylate synthase FDF35_01500 PF18339 RapA N-terminal Tudor like domain 1 FDF35_01500 PF00271 Helicase conserved C-terminal domain FDF35_01500 PF00176 SNF2 family N-terminal domain FDF35_01500 PF18337 RapA N-terminal Tudor like domain FDF35_01500 PF12137 RNA polymerase recycling family C-terminal FDF35_01510 PF00440 Bacterial regulatory proteins, tetR family FDF35_01515 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_01515 PF00970 Oxidoreductase FAD-binding domain FDF35_01515 PF00175 Oxidoreductase NAD-binding domain FDF35_01520 PF00487 Fatty acid desaturase FDF35_01540 PF00202 Aminotransferase class-III FDF35_01545 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDF35_01550 PF00171 Aldehyde dehydrogenase family FDF35_01555 PF01037 Lrp/AsnC ligand binding domain FDF35_01560 PF00205 Thiamine pyrophosphate enzyme, central domain FDF35_01560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDF35_01560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDF35_01565 PF00324 Amino acid permease FDF35_01570 PF12849 PBP superfamily domain FDF35_01575 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_01580 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_01585 PF00005 ABC transporter FDF35_01590 PF08496 Peptidase family S49 N-terminal FDF35_01590 PF01343 Peptidase family S49 FDF35_01605 PF08328 Adenylosuccinate lyase C-terminal FDF35_01605 PF00206 Lyase FDF35_01610 PF04356 Protein of unknown function (DUF489) FDF35_01620 PF00293 NUDIX domain FDF35_01620 PF13344 Haloacid dehalogenase-like hydrolase FDF35_01625 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_01630 PF07943 Penicillin-binding protein 5, C-terminal domain FDF35_01630 PF00768 D-alanyl-D-alanine carboxypeptidase FDF35_01645 PF01975 Survival protein SurE FDF35_01650 PF01551 Peptidase family M23 FDF35_01650 PF01476 LysM domain FDF35_01655 PF03466 LysR substrate binding domain FDF35_01655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_01660 PF13654 AAA domain FDF35_01660 PF05362 Lon protease (S16) C-terminal proteolytic domain FDF35_01665 PF07690 Major Facilitator Superfamily FDF35_01670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDF35_01680 PF01197 Ribosomal protein L31 FDF35_01695 PF04055 Radical SAM superfamily FDF35_01700 PF01132 Elongation factor P (EF-P) OB domain FDF35_01700 PF08207 Elongation factor P (EF-P) KOW-like domain FDF35_01700 PF09285 Elongation factor P, C-terminal FDF35_01705 PF13722 5TM C-terminal transporter carbon starvation CstA FDF35_01705 PF02554 Carbon starvation protein CstA FDF35_01710 PF04328 Selenoprotein, putative FDF35_01745 PF17954 Quercetinase C-terminal cupin domain FDF35_01745 PF02678 Pirin FDF35_01750 PF00291 Pyridoxal-phosphate dependent enzyme FDF35_01760 PF13309 HTH domain FDF35_01760 PF08348 YheO-like PAS domain FDF35_01780 PF01032 FecCD transport family FDF35_01785 PF01032 FecCD transport family FDF35_01790 PF00005 ABC transporter FDF35_01795 PF01497 Periplasmic binding protein FDF35_01800 PF00593 TonB dependent receptor FDF35_01800 PF07715 TonB-dependent Receptor Plug Domain FDF35_01805 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FDF35_01810 PF00668 Condensation domain FDF35_01810 PF00501 AMP-binding enzyme FDF35_01810 PF00550 Phosphopantetheine attachment site FDF35_01815 PF13193 AMP-binding enzyme C-terminal domain FDF35_01815 PF00501 AMP-binding enzyme FDF35_01825 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDF35_01845 PF00975 Thioesterase domain FDF35_01855 PF00425 chorismate binding enzyme FDF35_01865 PF01208 Uroporphyrinogen decarboxylase (URO-D) FDF35_01870 PF05675 Protein of unknown function (DUF817) FDF35_01895 PF00144 Beta-lactamase FDF35_01905 PF01799 [2Fe-2S] binding domain FDF35_01905 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_01930 PF02885 Glycosyl transferase family, helical bundle domain FDF35_01930 PF00591 Glycosyl transferase family, a/b domain FDF35_01935 PF00593 TonB dependent receptor FDF35_01935 PF07715 TonB-dependent Receptor Plug Domain FDF35_01945 PF00117 Glutamine amidotransferase class-I FDF35_01955 PF00854 POT family FDF35_01965 PF04345 Chorismate lyase FDF35_01970 PF01040 UbiA prenyltransferase family FDF35_02005 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FDF35_02005 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FDF35_02010 PF01784 NIF3 (NGG1p interacting factor 3) FDF35_02015 PF13180 PDZ domain FDF35_02020 PF01743 Poly A polymerase head domain FDF35_02020 PF12627 Probable RNA and SrmB- binding site of polymerase A FDF35_02025 PF00390 Malic enzyme, N-terminal domain FDF35_02025 PF03949 Malic enzyme, NAD binding domain FDF35_02025 PF01515 Phosphate acetyl/butaryl transferase FDF35_02030 PF00563 EAL domain FDF35_02030 PF00990 Diguanylate cyclase, GGDEF domain FDF35_02030 PF03707 Bacterial signalling protein N terminal repeat FDF35_02035 PF04452 RNA methyltransferase FDF35_02045 PF05221 S-adenosyl-L-homocysteine hydrolase FDF35_02045 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FDF35_02060 PF09317 Domain of unknown function (DUF1974) FDF35_02060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_02060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_02065 PF04055 Radical SAM superfamily FDF35_02070 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_02070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDF35_02080 PF07690 Major Facilitator Superfamily FDF35_02090 PF00557 Metallopeptidase family M24 FDF35_02095 PF00318 Ribosomal protein S2 FDF35_02100 PF00889 Elongation factor TS FDF35_02110 PF12833 Helix-turn-helix domain FDF35_02130 PF05036 Sporulation related domain FDF35_02130 PF03330 Lytic transglycolase FDF35_02140 PF01098 Cell cycle protein FDF35_02150 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FDF35_02150 PF14489 QueF-like protein FDF35_02155 PF01061 ABC-2 type transporter FDF35_02160 PF00005 ABC transporter FDF35_02190 PF00464 Serine hydroxymethyltransferase FDF35_02195 PF02321 Outer membrane efflux protein FDF35_02200 PF00873 AcrB/AcrD/AcrF family FDF35_02205 PF13533 Biotin-lipoyl like FDF35_02210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_02210 PF03466 LysR substrate binding domain FDF35_02215 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDF35_02220 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_02225 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_02230 PF00005 ABC transporter FDF35_02235 PF00893 Small Multidrug Resistance protein FDF35_02240 PF00037 4Fe-4S binding domain FDF35_02255 PF02567 Phenazine biosynthesis-like protein FDF35_02260 PF00175 Oxidoreductase NAD-binding domain FDF35_02260 PF00970 Oxidoreductase FAD-binding domain FDF35_02265 PF18389 TrmO C-terminal domain FDF35_02265 PF01980 tRNA-methyltransferase O FDF35_02275 PF00437 Type II/IV secretion system protein FDF35_02285 PF00486 Transcriptional regulatory protein, C terminal FDF35_02285 PF00072 Response regulator receiver domain FDF35_02290 PF00512 His Kinase A (phospho-acceptor) domain FDF35_02290 PF08521 Two-component sensor kinase N-terminal FDF35_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_02300 PF00293 NUDIX domain FDF35_02310 PF00905 Penicillin binding protein transpeptidase domain FDF35_02310 PF00912 Transglycosylase FDF35_02310 PF14814 Bifunctional transglycosylase second domain FDF35_02315 PF01513 ATP-NAD kinase FDF35_02320 PF07023 Protein of unknown function (DUF1315) FDF35_02325 PF02885 Glycosyl transferase family, helical bundle domain FDF35_02325 PF00591 Glycosyl transferase family, a/b domain FDF35_02335 PF00375 Sodium:dicarboxylate symporter family FDF35_02340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_02340 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_02340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_02345 PF00756 Putative esterase FDF35_02350 PF00800 Prephenate dehydratase FDF35_02350 PF01817 Chorismate mutase type II FDF35_02350 PF01842 ACT domain FDF35_02355 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDF35_02365 PF07687 Peptidase dimerisation domain FDF35_02365 PF01546 Peptidase family M20/M25/M40 FDF35_02370 PF01137 RNA 3'-terminal phosphate cyclase FDF35_02370 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain FDF35_02385 PF01139 tRNA-splicing ligase RtcB FDF35_02390 PF00753 Metallo-beta-lactamase superfamily FDF35_02395 PF06956 Regulator of RNA terminal phosphate cyclase FDF35_02395 PF00158 Sigma-54 interaction domain FDF35_02415 PF05690 Thiazole biosynthesis protein ThiG FDF35_02425 PF04241 Protein of unknown function (DUF423) FDF35_02430 PF04545 Sigma-70, region 4 FDF35_02430 PF00140 Sigma-70 factor, region 1.2 FDF35_02430 PF04542 Sigma-70 region 2 FDF35_02440 PF00313 'Cold-shock' DNA-binding domain FDF35_02445 PF00271 Helicase conserved C-terminal domain FDF35_02445 PF00270 DEAD/DEAH box helicase FDF35_02455 PF00881 Nitroreductase family FDF35_02460 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FDF35_02460 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FDF35_02480 PF01180 Dihydroorotate dehydrogenase FDF35_02485 PF02674 Colicin V production protein FDF35_02490 PF00156 Phosphoribosyl transferase domain FDF35_02505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDF35_02505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDF35_02510 PF01435 Peptidase family M48 FDF35_02515 PF09424 Yqey-like protein FDF35_02520 PF01165 Ribosomal protein S21 FDF35_02525 PF00814 Glycoprotease family FDF35_02545 PF00069 Protein kinase domain FDF35_02570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_02570 PF03466 LysR substrate binding domain FDF35_02575 PF00202 Aminotransferase class-III FDF35_02580 PF00171 Aldehyde dehydrogenase family FDF35_02615 PF04076 Bacterial OB fold (BOF) protein FDF35_02640 PF00561 alpha/beta hydrolase fold FDF35_02645 PF03616 Sodium/glutamate symporter FDF35_02655 PF07729 FCD domain FDF35_02655 PF00392 Bacterial regulatory proteins, gntR family FDF35_02705 PF00083 Sugar (and other) transporter FDF35_02705 PF08946 Osmosensory transporter coiled coil FDF35_02735 PF04403 Paraquat-inducible protein A FDF35_02740 PF02470 MlaD protein FDF35_02750 PF00576 HIUase/Transthyretin family FDF35_02760 PF00486 Transcriptional regulatory protein, C terminal FDF35_02760 PF00072 Response regulator receiver domain FDF35_02765 PF00512 His Kinase A (phospho-acceptor) domain FDF35_02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_02765 PF00672 HAMP domain FDF35_02805 PF00512 His Kinase A (phospho-acceptor) domain FDF35_02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_02805 PF08521 Two-component sensor kinase N-terminal FDF35_02810 PF00072 Response regulator receiver domain FDF35_02810 PF00486 Transcriptional regulatory protein, C terminal FDF35_02830 PF01177 Asp/Glu/Hydantoin racemase FDF35_02835 PF00892 EamA-like transporter family FDF35_02840 PF07995 Glucose / Sorbosone dehydrogenase FDF35_02860 PF00375 Sodium:dicarboxylate symporter family FDF35_02870 PF00753 Metallo-beta-lactamase superfamily FDF35_02870 PF16123 Hydroxyacylglutathione hydrolase C-terminus FDF35_02875 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_02880 PF00005 ABC transporter FDF35_02880 PF09383 NIL domain FDF35_02885 PF03180 NLPA lipoprotein FDF35_02895 PF02142 MGS-like domain FDF35_02895 PF01808 AICARFT/IMPCHase bienzyme FDF35_02900 PF02954 Bacterial regulatory protein, Fis family FDF35_02920 PF01134 Glucose inhibited division protein A FDF35_02920 PF13932 GidA associated domain FDF35_02930 PF14403 Circularly permuted ATP-grasp type 2 FDF35_02940 PF08379 Bacterial transglutaminase-like N-terminal region FDF35_02940 PF01841 Transglutaminase-like superfamily FDF35_02955 PF00772 DnaB-like helicase N terminal domain FDF35_02955 PF03796 DnaB-like helicase C terminal domain FDF35_02960 PF01281 Ribosomal protein L9, N-terminal domain FDF35_02960 PF03948 Ribosomal protein L9, C-terminal domain FDF35_02965 PF01084 Ribosomal protein S18 FDF35_02970 PF01250 Ribosomal protein S6 FDF35_02975 PF01040 UbiA prenyltransferase family FDF35_02980 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FDF35_02985 PF00510 Cytochrome c oxidase subunit III FDF35_02990 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDF35_02995 PF06481 COX Aromatic Rich Motif FDF35_02995 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FDF35_03005 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FDF35_03005 PF00391 PEP-utilising enzyme, mobile domain FDF35_03005 PF02896 PEP-utilising enzyme, TIM barrel domain FDF35_03010 PF03618 Kinase/pyrophosphorylase FDF35_03025 PF00535 Glycosyl transferase family 2 FDF35_03030 PF13994 PgaD-like protein FDF35_03040 PF00296 Luciferase-like monooxygenase FDF35_03060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_03060 PF03466 LysR substrate binding domain FDF35_03070 PF00472 RF-1 domain FDF35_03070 PF03462 PCRF domain FDF35_03075 PF13847 Methyltransferase domain FDF35_03075 PF17827 PrmC N-terminal domain FDF35_03080 PF12833 Helix-turn-helix domain FDF35_03085 PF00106 short chain dehydrogenase FDF35_03090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_03090 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_03090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_03095 PF00501 AMP-binding enzyme FDF35_03095 PF13193 AMP-binding enzyme C-terminal domain FDF35_03100 PF01613 Flavin reductase like domain FDF35_03105 PF00899 ThiF family FDF35_03110 PF03109 ABC1 family FDF35_03125 PF03814 Potassium-transporting ATPase A subunit FDF35_03135 PF02669 K+-transporting ATPase, c chain FDF35_03140 PF00512 His Kinase A (phospho-acceptor) domain FDF35_03140 PF02702 Osmosensitive K+ channel His kinase sensor domain FDF35_03140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_03140 PF13493 Domain of unknown function (DUF4118) FDF35_03145 PF00072 Response regulator receiver domain FDF35_03145 PF00486 Transcriptional regulatory protein, C terminal FDF35_03150 PF00120 Glutamine synthetase, catalytic domain FDF35_03160 PF03232 Ubiquinone biosynthesis protein COQ7 FDF35_03165 PF07690 Major Facilitator Superfamily FDF35_03170 PF17243 POTRA domain TamA domain 1 FDF35_03170 PF01103 Surface antigen FDF35_03170 PF07244 Surface antigen variable number repeat FDF35_03190 PF11791 Aconitate B N-terminal domain FDF35_03190 PF06434 Aconitate hydratase 2 N-terminus FDF35_03190 PF00330 Aconitase family (aconitate hydratase) FDF35_03200 PF00520 Ion transport protein FDF35_03200 PF00027 Cyclic nucleotide-binding domain FDF35_03205 PF07690 Major Facilitator Superfamily FDF35_03225 PF03466 LysR substrate binding domain FDF35_03225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_03230 PF04284 Protein of unknown function (DUF441) FDF35_03240 PF00849 RNA pseudouridylate synthase FDF35_03240 PF01479 S4 domain FDF35_03255 PF01479 S4 domain FDF35_03255 PF00849 RNA pseudouridylate synthase FDF35_03260 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FDF35_03265 PF01119 DNA mismatch repair protein, C-terminal domain FDF35_03265 PF08676 MutL C terminal dimerisation domain FDF35_03275 PF17209 Hfq protein FDF35_03285 PF00881 Nitroreductase family FDF35_03295 PF00149 Calcineurin-like phosphoesterase FDF35_03305 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FDF35_03305 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDF35_03310 PF00117 Glutamine amidotransferase class-I FDF35_03310 PF02540 NAD synthase FDF35_03310 PF00958 GMP synthase C terminal domain FDF35_03315 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FDF35_03325 PF13520 Amino acid permease FDF35_03330 PF00171 Aldehyde dehydrogenase family FDF35_03345 PF00465 Iron-containing alcohol dehydrogenase FDF35_03350 PF14493 Helix-turn-helix domain FDF35_03350 PF05970 PIF1-like helicase FDF35_03360 PF02110 Hydroxyethylthiazole kinase family FDF35_03375 PF01433 Peptidase family M1 domain FDF35_03375 PF11940 Domain of unknown function (DUF3458) Ig-like fold FDF35_03375 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FDF35_03390 PF13954 PapC N-terminal domain FDF35_03390 PF13953 PapC C-terminal domain FDF35_03390 PF00577 Outer membrane usher protein FDF35_03415 PF01817 Chorismate mutase type II FDF35_03420 PF01037 Lrp/AsnC ligand binding domain FDF35_03435 PF00440 Bacterial regulatory proteins, tetR family FDF35_03440 PF07715 TonB-dependent Receptor Plug Domain FDF35_03440 PF00593 TonB dependent receptor FDF35_03445 PF00924 Mechanosensitive ion channel FDF35_03475 PF07715 TonB-dependent Receptor Plug Domain FDF35_03475 PF00593 TonB dependent receptor FDF35_03495 PF00005 ABC transporter FDF35_03495 PF12848 ABC transporter FDF35_03495 PF16326 ABC transporter C-terminal domain FDF35_03500 PF00582 Universal stress protein family FDF35_03520 PF02308 MgtC family FDF35_03530 PF01037 Lrp/AsnC ligand binding domain FDF35_03535 PF01810 LysE type translocator FDF35_03545 PF03466 LysR substrate binding domain FDF35_03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_03555 PF02803 Thiolase, C-terminal domain FDF35_03555 PF00108 Thiolase, N-terminal domain FDF35_03580 PF07690 Major Facilitator Superfamily FDF35_03595 PF12170 DNA polymerase III tau subunit V interacting with alpha FDF35_03595 PF12169 DNA polymerase III subunits gamma and tau domain III FDF35_03595 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FDF35_03600 PF04185 Phosphoesterase family FDF35_03600 PF05506 Domain of unknown function (DUF756) FDF35_03605 PF03061 Thioesterase superfamily FDF35_03610 PF00465 Iron-containing alcohol dehydrogenase FDF35_03620 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDF35_03625 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FDF35_03625 PF01565 FAD binding domain FDF35_03650 PF01645 Conserved region in glutamate synthase FDF35_03720 PF01381 Helix-turn-helix FDF35_03910 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system FDF35_03970 PF00182 Chitinase class I FDF35_03980 PF00107 Zinc-binding dehydrogenase FDF35_03980 PF13823 Alcohol dehydrogenase GroES-associated FDF35_03980 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_03985 PF13340 Putative transposase of IS4/5 family (DUF4096) FDF35_03990 PF11799 impB/mucB/samB family C-terminal domain FDF35_03990 PF00817 impB/mucB/samB family FDF35_03990 PF13438 Domain of unknown function (DUF4113) FDF35_03995 PF00717 Peptidase S24-like FDF35_04015 PF12832 MFS_1 like family FDF35_04025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDF35_04025 PF00289 Biotin carboxylase, N-terminal domain FDF35_04025 PF02785 Biotin carboxylase C-terminal domain FDF35_04030 PF00364 Biotin-requiring enzyme FDF35_04035 PF01220 Dehydroquinase class II FDF35_04040 PF11799 impB/mucB/samB family C-terminal domain FDF35_04040 PF00817 impB/mucB/samB family FDF35_04040 PF13438 Domain of unknown function (DUF4113) FDF35_04050 PF00486 Transcriptional regulatory protein, C terminal FDF35_04050 PF00072 Response regulator receiver domain FDF35_04060 PF13806 Rieske-like [2Fe-2S] domain FDF35_04060 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_04060 PF04324 BFD-like [2Fe-2S] binding domain FDF35_04060 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDF35_04060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDF35_04060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDF35_04065 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDF35_04065 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDF35_04065 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_04065 PF04324 BFD-like [2Fe-2S] binding domain FDF35_04065 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDF35_04070 PF01568 Molydopterin dinucleotide binding domain FDF35_04070 PF00384 Molybdopterin oxidoreductase FDF35_04070 PF04324 BFD-like [2Fe-2S] binding domain FDF35_04070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDF35_04075 PF12804 MobA-like NTP transferase domain FDF35_04080 PF00384 Molybdopterin oxidoreductase FDF35_04080 PF01568 Molydopterin dinucleotide binding domain FDF35_04080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDF35_04085 PF06463 Molybdenum Cofactor Synthesis C FDF35_04085 PF04055 Radical SAM superfamily FDF35_04095 PF02391 MoaE protein FDF35_04100 PF01967 MoaC family FDF35_04100 PF00994 Probable molybdopterin binding domain FDF35_04105 PF03454 MoeA C-terminal region (domain IV) FDF35_04105 PF03453 MoeA N-terminal region (domain I and II) FDF35_04105 PF00994 Probable molybdopterin binding domain FDF35_04110 PF01638 HxlR-like helix-turn-helix FDF35_04115 PF00155 Aminotransferase class I and II FDF35_04115 PF00392 Bacterial regulatory proteins, gntR family FDF35_04120 PF00892 EamA-like transporter family FDF35_04140 PF02635 DsrE/DsrF-like family FDF35_04145 PF16363 GDP-mannose 4,6 dehydratase FDF35_04150 PF10415 Fumarase C C-terminus FDF35_04150 PF00206 Lyase FDF35_04175 PF01266 FAD dependent oxidoreductase FDF35_04185 PF02542 YgbB family FDF35_04195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDF35_04195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDF35_04200 PF00440 Bacterial regulatory proteins, tetR family FDF35_04205 PF02954 Bacterial regulatory protein, Fis family FDF35_04205 PF00072 Response regulator receiver domain FDF35_04205 PF00158 Sigma-54 interaction domain FDF35_04210 PF00512 His Kinase A (phospho-acceptor) domain FDF35_04210 PF00989 PAS fold FDF35_04210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_04220 PF04055 Radical SAM superfamily FDF35_04220 PF18693 TRAM domain FDF35_04220 PF00919 Uncharacterized protein family UPF0004 FDF35_04225 PF00696 Amino acid kinase family FDF35_04230 PF01765 Ribosome recycling factor FDF35_04235 PF01255 Putative undecaprenyl diphosphate synthase FDF35_04245 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FDF35_04245 PF13288 DXP reductoisomerase C-terminal domain FDF35_04245 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FDF35_04255 PF07244 Surface antigen variable number repeat FDF35_04255 PF01103 Surface antigen FDF35_04265 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_04265 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FDF35_04270 PF07977 FabA-like domain FDF35_04275 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FDF35_04275 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_04290 PF02631 RecX family FDF35_04295 PF00154 recA bacterial DNA recombination protein FDF35_04300 PF01479 S4 domain FDF35_04305 PF13419 Haloacid dehalogenase-like hydrolase FDF35_04335 PF00266 Aminotransferase class-V FDF35_04340 PF00324 Amino acid permease FDF35_04350 PF05922 Peptidase inhibitor I9 FDF35_04350 PF00082 Subtilase family FDF35_04355 PF01740 STAS domain FDF35_04355 PF00916 Sulfate permease family FDF35_04360 PF02586 SOS response associated peptidase (SRAP) FDF35_04365 PF07995 Glucose / Sorbosone dehydrogenase FDF35_04375 PF03707 Bacterial signalling protein N terminal repeat FDF35_04375 PF00563 EAL domain FDF35_04375 PF00990 Diguanylate cyclase, GGDEF domain FDF35_04390 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDF35_04390 PF02378 Phosphotransferase system, EIIC FDF35_04395 PF00294 pfkB family carbohydrate kinase FDF35_04400 PF00391 PEP-utilising enzyme, mobile domain FDF35_04400 PF00381 PTS HPr component phosphorylation site FDF35_04400 PF05524 PEP-utilising enzyme, N-terminal FDF35_04400 PF02896 PEP-utilising enzyme, TIM barrel domain FDF35_04400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDF35_04425 PF05525 Branched-chain amino acid transport protein FDF35_04430 PF00557 Metallopeptidase family M24 FDF35_04445 PF00462 Glutaredoxin FDF35_04450 PF00202 Aminotransferase class-III FDF35_04455 PF00571 CBS domain FDF35_04455 PF00478 IMP dehydrogenase / GMP reductase domain FDF35_04480 PF00448 SRP54-type protein, GTPase domain FDF35_04480 PF02881 SRP54-type protein, helical bundle domain FDF35_04490 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FDF35_04505 PF08173 Membrane bound YbgT-like protein FDF35_04510 PF02322 Cytochrome bd terminal oxidase subunit II FDF35_04515 PF01654 Cytochrome bd terminal oxidase subunit I FDF35_04525 PF13737 Transposase DDE domain FDF35_04530 PF07290 Protein of unknown function (DUF1449) FDF35_04540 PF00294 pfkB family carbohydrate kinase FDF35_04545 PF07715 TonB-dependent Receptor Plug Domain FDF35_04545 PF00593 TonB dependent receptor FDF35_04550 PF05193 Peptidase M16 inactive domain FDF35_04550 PF00675 Insulinase (Peptidase family M16) FDF35_04550 PF08367 Peptidase M16C associated FDF35_04555 PF02253 Phospholipase A1 FDF35_04560 PF02386 Cation transport protein FDF35_04565 PF02254 TrkA-N domain FDF35_04565 PF02080 TrkA-C domain FDF35_04570 PF00291 Pyridoxal-phosphate dependent enzyme FDF35_04570 PF00585 C-terminal regulatory domain of Threonine dehydratase FDF35_04575 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FDF35_04590 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDF35_04590 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDF35_04600 PF02617 ATP-dependent Clp protease adaptor protein ClpS FDF35_04605 PF17871 AAA lid domain FDF35_04605 PF00004 ATPase family associated with various cellular activities (AAA) FDF35_04605 PF07724 AAA domain (Cdc48 subfamily) FDF35_04605 PF02861 Clp amino terminal domain, pathogenicity island component FDF35_04605 PF10431 C-terminal, D2-small domain, of ClpB protein FDF35_04610 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FDF35_04615 PF00793 DAHP synthetase I family FDF35_04660 PF06418 CTP synthase N-terminus FDF35_04660 PF00117 Glutamine amidotransferase class-I FDF35_04665 PF00793 DAHP synthetase I family FDF35_04670 PF03952 Enolase, N-terminal domain FDF35_04670 PF00113 Enolase, C-terminal TIM barrel domain FDF35_04675 PF04239 Protein of unknown function (DUF421) FDF35_04680 PF04977 Septum formation initiator FDF35_04685 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FDF35_04690 PF01144 Coenzyme A transferase FDF35_04695 PF01144 Coenzyme A transferase FDF35_04700 PF00108 Thiolase, N-terminal domain FDF35_04700 PF02803 Thiolase, C-terminal domain FDF35_04705 PF00206 Lyase FDF35_04705 PF10397 Adenylosuccinate lyase C-terminus FDF35_04710 PF00561 alpha/beta hydrolase fold FDF35_04715 PF07690 Major Facilitator Superfamily FDF35_04720 PF02627 Carboxymuconolactone decarboxylase family FDF35_04725 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FDF35_04725 PF00775 Dioxygenase FDF35_04730 PF00775 Dioxygenase FDF35_04740 PF05048 Periplasmic copper-binding protein (NosD) FDF35_04745 PF04966 Carbohydrate-selective porin, OprB family FDF35_04750 PF13360 PQQ-like domain FDF35_04750 PF01011 PQQ enzyme repeat FDF35_04760 PF04143 Sulphur transport FDF35_04770 PF00753 Metallo-beta-lactamase superfamily FDF35_04775 PF01614 Bacterial transcriptional regulator FDF35_04775 PF09339 IclR helix-turn-helix domain FDF35_04780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_04780 PF03466 LysR substrate binding domain FDF35_04785 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_04785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_04785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_04800 PF00106 short chain dehydrogenase FDF35_04810 PF07690 Major Facilitator Superfamily FDF35_04820 PF01425 Amidase FDF35_04825 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDF35_04840 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDF35_04840 PF00355 Rieske [2Fe-2S] domain FDF35_04855 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_04855 PF00175 Oxidoreductase NAD-binding domain FDF35_04860 PF01613 Flavin reductase like domain FDF35_04865 PF02311 AraC-like ligand binding domain FDF35_04865 PF12833 Helix-turn-helix domain FDF35_04870 PF01179 Copper amine oxidase, enzyme domain FDF35_04870 PF02727 Copper amine oxidase, N2 domain FDF35_04870 PF02728 Copper amine oxidase, N3 domain FDF35_04870 PF07833 Copper amine oxidase N-terminal domain FDF35_04880 PF00171 Aldehyde dehydrogenase family FDF35_04885 PF01804 Penicillin amidase FDF35_04890 PF12146 Serine aminopeptidase, S33 FDF35_04895 PF02803 Thiolase, C-terminal domain FDF35_04895 PF00108 Thiolase, N-terminal domain FDF35_04900 PF01144 Coenzyme A transferase FDF35_04905 PF01144 Coenzyme A transferase FDF35_04910 PF00775 Dioxygenase FDF35_04910 PF04444 Catechol dioxygenase N terminus FDF35_04915 PF02426 Muconolactone delta-isomerase FDF35_04920 PF13378 Enolase C-terminal domain-like FDF35_04920 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDF35_04925 PF03466 LysR substrate binding domain FDF35_04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_04935 PF00392 Bacterial regulatory proteins, gntR family FDF35_04935 PF07729 FCD domain FDF35_04940 PF00920 Dehydratase family FDF35_04945 PF07690 Major Facilitator Superfamily FDF35_04955 PF00171 Aldehyde dehydrogenase family FDF35_04965 PF00561 alpha/beta hydrolase fold FDF35_04970 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_04970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDF35_04975 PF00106 short chain dehydrogenase FDF35_04985 PF00376 MerR family regulatory protein FDF35_04985 PF09278 MerR, DNA binding FDF35_05005 PF12706 Beta-lactamase superfamily domain FDF35_05010 PF00440 Bacterial regulatory proteins, tetR family FDF35_05010 PF08359 YsiA-like protein, C-terminal region FDF35_05015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_05015 PF03466 LysR substrate binding domain FDF35_05030 PF00106 short chain dehydrogenase FDF35_05035 PF01575 MaoC like domain FDF35_05040 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_05040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_05040 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDF35_05040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_05100 PF07690 Major Facilitator Superfamily FDF35_05120 PF08450 SMP-30/Gluconolactonase/LRE-like region FDF35_05130 PF03466 LysR substrate binding domain FDF35_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_05150 PF00746 LPXTG cell wall anchor motif FDF35_05150 PF17210 SdrD B-like domain FDF35_05150 PF17961 Bacterial Ig domain FDF35_05150 PF04650 YSIRK type signal peptide FDF35_05150 PF10425 C-terminus of bacterial fibrinogen-binding adhesin FDF35_05170 PF00171 Aldehyde dehydrogenase family FDF35_05175 PF00920 Dehydratase family FDF35_05190 PF01370 NAD dependent epimerase/dehydratase family FDF35_05195 PF07690 Major Facilitator Superfamily FDF35_05200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDF35_05200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDF35_05210 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_05210 PF00107 Zinc-binding dehydrogenase FDF35_05245 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDF35_05245 PF14572 Phosphoribosyl synthetase-associated domain FDF35_05250 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDF35_05265 PF13533 Biotin-lipoyl like FDF35_05270 PF07690 Major Facilitator Superfamily FDF35_05295 PF01975 Survival protein SurE FDF35_05305 PF13291 ACT domain FDF35_05305 PF04607 Region found in RelA / SpoT proteins FDF35_05305 PF02824 TGS domain FDF35_05325 PF13673 Acetyltransferase (GNAT) domain FDF35_05365 PF12146 Serine aminopeptidase, S33 FDF35_05370 PF02311 AraC-like ligand binding domain FDF35_05370 PF12833 Helix-turn-helix domain FDF35_05385 PF00512 His Kinase A (phospho-acceptor) domain FDF35_05385 PF16527 Two-component sensor protein CpxA, periplasmic domain FDF35_05385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_05385 PF00672 HAMP domain FDF35_05390 PF00486 Transcriptional regulatory protein, C terminal FDF35_05390 PF00072 Response regulator receiver domain FDF35_05395 PF00529 HlyD membrane-fusion protein of T1SS FDF35_05395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDF35_05405 PF02321 Outer membrane efflux protein FDF35_05410 PF12146 Serine aminopeptidase, S33 FDF35_05415 PF00743 Flavin-binding monooxygenase-like FDF35_05420 PF01593 Flavin containing amine oxidoreductase FDF35_05435 PF01266 FAD dependent oxidoreductase FDF35_05475 PF01244 Membrane dipeptidase (Peptidase family M19) FDF35_05480 PF04055 Radical SAM superfamily FDF35_05480 PF13186 Iron-sulfur cluster-binding domain FDF35_05485 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FDF35_05490 PF03070 TENA/THI-4/PQQC family FDF35_05495 PF12706 Beta-lactamase superfamily domain FDF35_05500 PF08042 PqqA family FDF35_05505 PF13089 Polyphosphate kinase N-terminal domain FDF35_05505 PF02503 Polyphosphate kinase middle domain FDF35_05505 PF17941 Polyphosphate kinase C-terminal domain 1 FDF35_05505 PF13090 Polyphosphate kinase C-terminal domain 2 FDF35_05510 PF00149 Calcineurin-like phosphoesterase FDF35_05525 PF00106 short chain dehydrogenase FDF35_05530 PF00005 ABC transporter FDF35_05530 PF03459 TOBE domain FDF35_05535 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_05545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_05545 PF03459 TOBE domain FDF35_05550 PF00355 Rieske [2Fe-2S] domain FDF35_05550 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDF35_05555 PF00866 Ring hydroxylating beta subunit FDF35_05560 PF00970 Oxidoreductase FAD-binding domain FDF35_05560 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_05560 PF00175 Oxidoreductase NAD-binding domain FDF35_05565 PF14525 AraC-binding-like domain FDF35_05565 PF12833 Helix-turn-helix domain FDF35_05575 PF01613 Flavin reductase like domain FDF35_05590 PF01738 Dienelactone hydrolase family FDF35_05600 PF07690 Major Facilitator Superfamily FDF35_05605 PF12833 Helix-turn-helix domain FDF35_05605 PF06719 AraC-type transcriptional regulator N-terminus FDF35_05625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_05625 PF03466 LysR substrate binding domain FDF35_05630 PF01144 Coenzyme A transferase FDF35_05635 PF01144 Coenzyme A transferase FDF35_05640 PF02667 Short chain fatty acid transporter FDF35_05645 PF00108 Thiolase, N-terminal domain FDF35_05645 PF02803 Thiolase, C-terminal domain FDF35_05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_05650 PF03466 LysR substrate binding domain FDF35_05655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_05655 PF03466 LysR substrate binding domain FDF35_05670 PF10415 Fumarase C C-terminus FDF35_05670 PF00206 Lyase FDF35_05675 PF00593 TonB dependent receptor FDF35_05675 PF07715 TonB-dependent Receptor Plug Domain FDF35_05680 PF00083 Sugar (and other) transporter FDF35_05700 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_05705 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDF35_05730 PF02525 Flavodoxin-like fold FDF35_05735 PF01638 HxlR-like helix-turn-helix FDF35_05740 PF06445 GyrI-like small molecule binding domain FDF35_05740 PF12833 Helix-turn-helix domain FDF35_05755 PF01925 Sulfite exporter TauE/SafE FDF35_05760 PF00753 Metallo-beta-lactamase superfamily FDF35_05760 PF04273 Putative phosphatase (DUF442) FDF35_05765 PF00753 Metallo-beta-lactamase superfamily FDF35_05765 PF04273 Putative phosphatase (DUF442) FDF35_05770 PF00158 Sigma-54 interaction domain FDF35_05770 PF00072 Response regulator receiver domain FDF35_05770 PF02954 Bacterial regulatory protein, Fis family FDF35_05775 PF01062 Bestrophin, RFP-TM, chloride channel FDF35_05780 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_05780 PF00107 Zinc-binding dehydrogenase FDF35_05785 PF00106 short chain dehydrogenase FDF35_05790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDF35_05790 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_05795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDF35_05795 PF02817 e3 binding domain FDF35_05795 PF00364 Biotin-requiring enzyme FDF35_05800 PF02780 Transketolase, C-terminal domain FDF35_05800 PF02779 Transketolase, pyrimidine binding domain FDF35_05805 PF00676 Dehydrogenase E1 component FDF35_05810 PF04055 Radical SAM superfamily FDF35_05825 PF00990 Diguanylate cyclase, GGDEF domain FDF35_05825 PF08448 PAS fold FDF35_05830 PF01264 Chorismate synthase FDF35_05835 PF05175 Methyltransferase small domain FDF35_05850 PF17862 AAA+ lid domain FDF35_05850 PF00004 ATPase family associated with various cellular activities (AAA) FDF35_05850 PF01434 Peptidase family M41 FDF35_05860 PF05166 YcgL domain FDF35_05880 PF01612 3'-5' exonuclease FDF35_05880 PF00570 HRDC domain FDF35_05885 PF02132 RecR protein FDF35_05885 PF13662 Toprim domain FDF35_05890 PF02575 YbaB/EbfC DNA-binding family FDF35_05900 PF01053 Cys/Met metabolism PLP-dependent enzyme FDF35_05905 PF00561 alpha/beta hydrolase fold FDF35_05910 PF08241 Methyltransferase domain FDF35_05940 PF01230 HIT domain FDF35_05980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDF35_05990 PF02684 Lipid-A-disaccharide synthetase FDF35_05995 PF00593 TonB dependent receptor FDF35_05995 PF07715 TonB-dependent Receptor Plug Domain FDF35_06015 PF01925 Sulfite exporter TauE/SafE FDF35_06020 PF00793 DAHP synthetase I family FDF35_06025 PF02654 Cobalamin-5-phosphate synthase FDF35_06035 PF00300 Histidine phosphatase superfamily (branch 1) FDF35_06040 PF02277 Phosphoribosyltransferase FDF35_06045 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FDF35_06055 PF13419 Haloacid dehalogenase-like hydrolase FDF35_06085 PF00593 TonB dependent receptor FDF35_06085 PF07715 TonB-dependent Receptor Plug Domain FDF35_06090 PF03737 Aldolase/RraA FDF35_06100 PF06276 Ferric iron reductase FhuF-like transporter FDF35_06100 PF04183 IucA / IucC family FDF35_06105 PF06276 Ferric iron reductase FhuF-like transporter FDF35_06105 PF04183 IucA / IucC family FDF35_06110 PF07690 Major Facilitator Superfamily FDF35_06120 PF04183 IucA / IucC family FDF35_06120 PF06276 Ferric iron reductase FhuF-like transporter FDF35_06125 PF04073 Aminoacyl-tRNA editing domain FDF35_06135 PF03109 ABC1 family FDF35_06140 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_06140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_06140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_06145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_06145 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_06145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_06150 PF00487 Fatty acid desaturase FDF35_06155 PF12833 Helix-turn-helix domain FDF35_06155 PF12852 Cupin FDF35_06160 PF00639 PPIC-type PPIASE domain FDF35_06160 PF09312 SurA N-terminal domain FDF35_06165 PF00216 Bacterial DNA-binding protein FDF35_06180 PF02082 Transcriptional regulator FDF35_06185 PF00266 Aminotransferase class-V FDF35_06190 PF01592 NifU-like N terminal domain FDF35_06195 PF01521 Iron-sulphur cluster biosynthesis FDF35_06200 PF00226 DnaJ domain FDF35_06200 PF07743 HSCB C-terminal oligomerisation domain FDF35_06205 PF00012 Hsp70 protein FDF35_06210 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_06215 PF00211 Adenylate and Guanylate cyclase catalytic domain FDF35_06225 PF02559 CarD-like/TRCF domain FDF35_06225 PF00270 DEAD/DEAH box helicase FDF35_06225 PF00271 Helicase conserved C-terminal domain FDF35_06225 PF03461 TRCF domain FDF35_06225 PF17757 UvrB interaction domain FDF35_06245 PF03737 Aldolase/RraA FDF35_06250 PF13460 NAD(P)H-binding FDF35_06255 PF01649 Ribosomal protein S20 FDF35_06265 PF00459 Inositol monophosphatase family FDF35_06280 PF00005 ABC transporter FDF35_06280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDF35_06285 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_06290 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_06295 PF01432 Peptidase family M3 FDF35_06315 PF00593 TonB dependent receptor FDF35_06315 PF07715 TonB-dependent Receptor Plug Domain FDF35_06325 PF01618 MotA/TolQ/ExbB proton channel family FDF35_06330 PF02472 Biopolymer transport protein ExbD/TolR FDF35_06335 PF02472 Biopolymer transport protein ExbD/TolR FDF35_06345 PF01274 Malate synthase FDF35_06430 PF09669 Phage regulatory protein Rha (Phage_pRha) FDF35_06430 PF10549 ORF11CD3 domain FDF35_06545 PF00772 DnaB-like helicase N terminal domain FDF35_06545 PF03796 DnaB-like helicase C terminal domain FDF35_06610 PF00589 Phage integrase family FDF35_06610 PF02899 Phage integrase, N-terminal SAM-like domain FDF35_06615 PF03969 AFG1-like ATPase FDF35_06625 PF00743 Flavin-binding monooxygenase-like FDF35_06635 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FDF35_06645 PF00216 Bacterial DNA-binding protein FDF35_06650 PF00575 S1 RNA binding domain FDF35_06655 PF02224 Cytidylate kinase FDF35_06665 PF14437 MafB19-like deaminase FDF35_06675 PF03167 Uracil DNA glycosylase superfamily FDF35_06685 PF03934 Type II secretion system (T2SS), protein K FDF35_06695 PF07963 Prokaryotic N-terminal methylation motif FDF35_06695 PF02501 Type II secretion system (T2SS), protein I FDF35_06710 PF01026 TatD related DNase FDF35_06720 PF09115 DNA polymerase III, delta subunit, C terminal FDF35_06725 PF02348 Cytidylyltransferase FDF35_06745 PF01618 MotA/TolQ/ExbB proton channel family FDF35_06750 PF17762 HTH domain found in ParB protein FDF35_06750 PF02195 ParB-like nuclease domain FDF35_06755 PF13614 AAA domain FDF35_06760 PF02527 rRNA small subunit methyltransferase G FDF35_06765 PF00483 Nucleotidyl transferase FDF35_06770 PF01636 Phosphotransferase enzyme family FDF35_06775 PF04453 LPS transport system D FDF35_06775 PF03968 OstA-like protein FDF35_06780 PF00639 PPIC-type PPIASE domain FDF35_06780 PF09312 SurA N-terminal domain FDF35_06785 PF01116 Fructose-bisphosphate aldolase class-II FDF35_06795 PF00162 Phosphoglycerate kinase FDF35_06805 PF02545 Maf-like protein FDF35_06810 PF08007 Cupin superfamily protein FDF35_06825 PF00375 Sodium:dicarboxylate symporter family FDF35_06830 PF06912 Protein of unknown function (DUF1275) FDF35_06835 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FDF35_06840 PF00664 ABC transporter transmembrane region FDF35_06840 PF00005 ABC transporter FDF35_06850 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDF35_06850 PF12833 Helix-turn-helix domain FDF35_06855 PF01597 Glycine cleavage H-protein FDF35_06860 PF02146 Sir2 family FDF35_06865 PF00474 Sodium:solute symporter family FDF35_06870 PF01037 Lrp/AsnC ligand binding domain FDF35_06875 PF01619 Proline dehydrogenase FDF35_06875 PF14850 DNA-binding domain of Proline dehydrogenase FDF35_06875 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FDF35_06875 PF00171 Aldehyde dehydrogenase family FDF35_06880 PF04229 GrpB protein FDF35_06885 PF05958 tRNA (Uracil-5-)-methyltransferase FDF35_06895 PF09992 Phosphodiester glycosidase FDF35_06905 PF04264 YceI-like domain FDF35_06915 PF02779 Transketolase, pyrimidine binding domain FDF35_06915 PF02780 Transketolase, C-terminal domain FDF35_06915 PF00456 Transketolase, thiamine diphosphate binding domain FDF35_06920 PF02772 S-adenosylmethionine synthetase, central domain FDF35_06920 PF02773 S-adenosylmethionine synthetase, C-terminal domain FDF35_06920 PF00438 S-adenosylmethionine synthetase, N-terminal domain FDF35_06940 PF00905 Penicillin binding protein transpeptidase domain FDF35_06955 PF02075 Crossover junction endodeoxyribonuclease RuvC FDF35_06960 PF03853 YjeF-related protein N-terminus FDF35_06960 PF01256 Carbohydrate kinase FDF35_06965 PF08331 Domain of unknown function (DUF1730) FDF35_06970 PF04055 Radical SAM superfamily FDF35_06970 PF06968 Biotin and Thiamin Synthesis associated domain FDF35_06990 PF02753 Pili assembly chaperone PapD, C-terminal domain FDF35_06990 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FDF35_07020 PF00892 EamA-like transporter family FDF35_07030 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDF35_07040 PF03466 LysR substrate binding domain FDF35_07040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07060 PF00440 Bacterial regulatory proteins, tetR family FDF35_07070 PF01709 Transcriptional regulator FDF35_07075 PF01037 Lrp/AsnC ligand binding domain FDF35_07085 PF00005 ABC transporter FDF35_07090 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_07095 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_07110 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDF35_07110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_07120 PF00296 Luciferase-like monooxygenase FDF35_07125 PF03180 NLPA lipoprotein FDF35_07135 PF00005 ABC transporter FDF35_07135 PF09383 NIL domain FDF35_07140 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_07145 PF06071 Protein of unknown function (DUF933) FDF35_07145 PF01926 50S ribosome-binding GTPase FDF35_07170 PF03591 AzlC protein FDF35_07175 PF05437 Branched-chain amino acid transport protein (AzlD) FDF35_07185 PF02222 ATP-grasp domain FDF35_07190 PF01909 Nucleotidyltransferase domain FDF35_07190 PF01966 HD domain FDF35_07190 PF08335 GlnD PII-uridylyltransferase FDF35_07195 PF00155 Aminotransferase class I and II FDF35_07205 PF12852 Cupin FDF35_07205 PF12833 Helix-turn-helix domain FDF35_07210 PF00255 Glutathione peroxidase FDF35_07215 PF01641 SelR domain FDF35_07220 PF00155 Aminotransferase class I and II FDF35_07225 PF00375 Sodium:dicarboxylate symporter family FDF35_07230 PF17763 Glutaminase/Asparaginase C-terminal domain FDF35_07230 PF00710 Asparaginase, N-terminal FDF35_07235 PF01336 OB-fold nucleic acid binding domain FDF35_07235 PF02811 PHP domain FDF35_07235 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDF35_07235 PF14579 Helix-hairpin-helix motif FDF35_07235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDF35_07240 PF00588 SpoU rRNA Methylase family FDF35_07245 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_07260 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_07260 PF13192 Thioredoxin domain FDF35_07275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07275 PF03466 LysR substrate binding domain FDF35_07280 PF03358 NADPH-dependent FMN reductase FDF35_07285 PF01758 Sodium Bile acid symporter family FDF35_07295 PF01022 Bacterial regulatory protein, arsR family FDF35_07300 PF03960 ArsC family FDF35_07310 PF01979 Amidohydrolase family FDF35_07310 PF13382 Adenine deaminase C-terminal domain FDF35_07320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07320 PF03466 LysR substrate binding domain FDF35_07330 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDF35_07335 PF01177 Asp/Glu/Hydantoin racemase FDF35_07340 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FDF35_07345 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_07350 PF00005 ABC transporter FDF35_07365 PF00083 Sugar (and other) transporter FDF35_07390 PF01654 Cytochrome bd terminal oxidase subunit I FDF35_07395 PF02322 Cytochrome bd terminal oxidase subunit II FDF35_07405 PF00392 Bacterial regulatory proteins, gntR family FDF35_07405 PF00155 Aminotransferase class I and II FDF35_07410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07410 PF03466 LysR substrate binding domain FDF35_07425 PF00698 Acyl transferase domain FDF35_07430 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FDF35_07440 PF01039 Carboxyl transferase domain FDF35_07445 PF06857 Malonate decarboxylase delta subunit (MdcD) FDF35_07450 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FDF35_07455 PF16957 Malonate decarboxylase, alpha subunit, transporter FDF35_07460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07460 PF03466 LysR substrate binding domain FDF35_07470 PF07690 Major Facilitator Superfamily FDF35_07485 PF00155 Aminotransferase class I and II FDF35_07485 PF00392 Bacterial regulatory proteins, gntR family FDF35_07490 PF04172 LrgB-like family FDF35_07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07500 PF03466 LysR substrate binding domain FDF35_07505 PF14834 Glutathione S-transferase, C-terminal domain FDF35_07505 PF02798 Glutathione S-transferase, N-terminal domain FDF35_07515 PF03466 LysR substrate binding domain FDF35_07515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07525 PF00581 Rhodanese-like domain FDF35_07530 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_07540 PF00266 Aminotransferase class-V FDF35_07545 PF01810 LysE type translocator FDF35_07550 PF03466 LysR substrate binding domain FDF35_07550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07555 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDF35_07560 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDF35_07565 PF00005 ABC transporter FDF35_07570 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_07575 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_07590 PF00072 Response regulator receiver domain FDF35_07605 PF01037 Lrp/AsnC ligand binding domain FDF35_07605 PF13404 AsnC-type helix-turn-helix domain FDF35_07620 PF00717 Peptidase S24-like FDF35_07645 PF06628 Catalase-related immune-responsive FDF35_07645 PF18011 C-terminal domain found in long catalases FDF35_07645 PF00199 Catalase FDF35_07660 PF02464 Competence-damaged protein FDF35_07660 PF18146 Damage-inducible protein CinA KH domain FDF35_07660 PF00994 Probable molybdopterin binding domain FDF35_07690 PF03466 LysR substrate binding domain FDF35_07690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07720 PF00440 Bacterial regulatory proteins, tetR family FDF35_07725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_07725 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_07725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_07730 PF01039 Carboxyl transferase domain FDF35_07735 PF00378 Enoyl-CoA hydratase/isomerase FDF35_07740 PF00289 Biotin carboxylase, N-terminal domain FDF35_07740 PF00364 Biotin-requiring enzyme FDF35_07740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDF35_07740 PF02785 Biotin carboxylase C-terminal domain FDF35_07745 PF00682 HMGL-like FDF35_07750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07750 PF03466 LysR substrate binding domain FDF35_07765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_07765 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDF35_07765 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_07765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_07775 PF07690 Major Facilitator Superfamily FDF35_07785 PF01144 Coenzyme A transferase FDF35_07790 PF01144 Coenzyme A transferase FDF35_07795 PF07690 Major Facilitator Superfamily FDF35_07800 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_07800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_07800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_07805 PF00378 Enoyl-CoA hydratase/isomerase FDF35_07815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDF35_07815 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FDF35_07815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDF35_07820 PF00108 Thiolase, N-terminal domain FDF35_07820 PF02803 Thiolase, C-terminal domain FDF35_07825 PF09339 IclR helix-turn-helix domain FDF35_07830 PF07690 Major Facilitator Superfamily FDF35_07835 PF03060 Nitronate monooxygenase FDF35_07840 PF00378 Enoyl-CoA hydratase/isomerase FDF35_07845 PF09339 IclR helix-turn-helix domain FDF35_07850 PF02515 CoA-transferase family III FDF35_07855 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_07855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_07855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_07860 PF07690 Major Facilitator Superfamily FDF35_07865 PF13419 Haloacid dehalogenase-like hydrolase FDF35_07870 PF00266 Aminotransferase class-V FDF35_07875 PF01266 FAD dependent oxidoreductase FDF35_07880 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_07885 PF00005 ABC transporter FDF35_07885 PF08402 TOBE domain FDF35_07900 PF01168 Alanine racemase, N-terminal domain FDF35_07900 PF00842 Alanine racemase, C-terminal domain FDF35_07905 PF01494 FAD binding domain FDF35_07915 PF02525 Flavodoxin-like fold FDF35_07920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_07920 PF03466 LysR substrate binding domain FDF35_07925 PF02627 Carboxymuconolactone decarboxylase family FDF35_07940 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDF35_07950 PF00171 Aldehyde dehydrogenase family FDF35_07955 PF00296 Luciferase-like monooxygenase FDF35_07960 PF01613 Flavin reductase like domain FDF35_07965 PF12697 Alpha/beta hydrolase family FDF35_07985 PF01292 Prokaryotic cytochrome b561 FDF35_07990 PF00199 Catalase FDF35_07995 PF07690 Major Facilitator Superfamily FDF35_08000 PF00682 HMGL-like FDF35_08005 PF02515 CoA-transferase family III FDF35_08010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_08020 PF12833 Helix-turn-helix domain FDF35_08020 PF06719 AraC-type transcriptional regulator N-terminus FDF35_08030 PF00313 'Cold-shock' DNA-binding domain FDF35_08090 PF03061 Thioesterase superfamily FDF35_08100 PF08223 PaaX-like protein C-terminal domain FDF35_08100 PF07848 PaaX-like protein FDF35_08105 PF00501 AMP-binding enzyme FDF35_08105 PF14535 AMP-binding enzyme C-terminal domain FDF35_08110 PF02803 Thiolase, C-terminal domain FDF35_08110 PF00108 Thiolase, N-terminal domain FDF35_08120 PF00378 Enoyl-CoA hydratase/isomerase FDF35_08125 PF00378 Enoyl-CoA hydratase/isomerase FDF35_08130 PF00970 Oxidoreductase FAD-binding domain FDF35_08130 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_08130 PF00175 Oxidoreductase NAD-binding domain FDF35_08135 PF01883 Iron-sulfur cluster assembly protein FDF35_08140 PF05138 Phenylacetic acid catabolic protein FDF35_08145 PF06243 Phenylacetic acid degradation B FDF35_08150 PF05138 Phenylacetic acid catabolic protein FDF35_08160 PF03315 Serine dehydratase beta chain FDF35_08160 PF03313 Serine dehydratase alpha chain FDF35_08165 PF13520 Amino acid permease FDF35_08170 PF00171 Aldehyde dehydrogenase family FDF35_08175 PF00083 Sugar (and other) transporter FDF35_08185 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_08185 PF04324 BFD-like [2Fe-2S] binding domain FDF35_08195 PF01266 FAD dependent oxidoreductase FDF35_08200 PF05544 Proline racemase FDF35_08205 PF00392 Bacterial regulatory proteins, gntR family FDF35_08215 PF00701 Dihydrodipicolinate synthetase family FDF35_08230 PF09278 MerR, DNA binding FDF35_08230 PF00376 MerR family regulatory protein FDF35_08255 PF07690 Major Facilitator Superfamily FDF35_08260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDF35_08270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_08270 PF03466 LysR substrate binding domain FDF35_08310 PF01389 OmpA-like transmembrane domain FDF35_08310 PF00691 OmpA family FDF35_08440 PF00005 ABC transporter FDF35_08445 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDF35_08455 PF08753 NikR C terminal nickel binding domain FDF35_08455 PF01402 Ribbon-helix-helix protein, copG family FDF35_08470 PF01638 HxlR-like helix-turn-helix FDF35_08475 PF02525 Flavodoxin-like fold FDF35_08495 PF00107 Zinc-binding dehydrogenase FDF35_08495 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_08495 PF13823 Alcohol dehydrogenase GroES-associated FDF35_08505 PF00440 Bacterial regulatory proteins, tetR family FDF35_08525 PF00654 Voltage gated chloride channel FDF35_08530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDF35_08530 PF02785 Biotin carboxylase C-terminal domain FDF35_08530 PF00289 Biotin carboxylase, N-terminal domain FDF35_08530 PF00364 Biotin-requiring enzyme FDF35_08540 PF07286 Protein of unknown function (DUF1445) FDF35_08545 PF03746 LamB/YcsF family FDF35_08550 PF01566 Natural resistance-associated macrophage protein FDF35_08555 PF03466 LysR substrate binding domain FDF35_08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_08585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDF35_08585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDF35_08605 PF07690 Major Facilitator Superfamily FDF35_08625 PF00990 Diguanylate cyclase, GGDEF domain FDF35_08625 PF00563 EAL domain FDF35_08625 PF03707 Bacterial signalling protein N terminal repeat FDF35_08630 PF00892 EamA-like transporter family FDF35_08635 PF01037 Lrp/AsnC ligand binding domain FDF35_08640 PF01624 MutS domain I FDF35_08640 PF05190 MutS family domain IV FDF35_08640 PF05192 MutS domain III FDF35_08640 PF05188 MutS domain II FDF35_08640 PF00488 MutS domain V FDF35_08650 PF11953 Domain of unknown function (DUF3470) FDF35_08650 PF00037 4Fe-4S binding domain FDF35_08660 PF01596 O-methyltransferase FDF35_08670 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_08675 PF01205 Uncharacterized protein family UPF0029 FDF35_08685 PF00664 ABC transporter transmembrane region FDF35_08685 PF00005 ABC transporter FDF35_08685 PF03412 Peptidase C39 family FDF35_08690 PF02321 Outer membrane efflux protein FDF35_08695 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDF35_08695 PF00005 ABC transporter FDF35_08700 PF03968 OstA-like protein FDF35_08715 PF00571 CBS domain FDF35_08715 PF01380 SIS domain FDF35_08720 PF09190 DALR domain FDF35_08720 PF01406 tRNA synthetases class I (C) catalytic domain FDF35_08755 PF01638 HxlR-like helix-turn-helix FDF35_08760 PF07690 Major Facilitator Superfamily FDF35_08790 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDF35_08790 PF03807 NADP oxidoreductase coenzyme F420-dependent FDF35_08800 PF00313 'Cold-shock' DNA-binding domain FDF35_08805 PF01810 LysE type translocator FDF35_08840 PF13742 OB-fold nucleic acid binding domain FDF35_08840 PF02601 Exonuclease VII, large subunit FDF35_08880 PF09278 MerR, DNA binding FDF35_08880 PF00376 MerR family regulatory protein FDF35_08885 PF00403 Heavy-metal-associated domain FDF35_08900 PF00355 Rieske [2Fe-2S] domain FDF35_08900 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDF35_08905 PF00866 Ring hydroxylating beta subunit FDF35_08910 PF00175 Oxidoreductase NAD-binding domain FDF35_08910 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_08910 PF00970 Oxidoreductase FAD-binding domain FDF35_08915 PF00106 short chain dehydrogenase FDF35_08920 PF03594 Benzoate membrane transport protein FDF35_08925 PF07690 Major Facilitator Superfamily FDF35_08945 PF00578 AhpC/TSA family FDF35_08945 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDF35_08965 PF13192 Thioredoxin domain FDF35_08965 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_08975 PF00043 Glutathione S-transferase, C-terminal domain FDF35_08975 PF02798 Glutathione S-transferase, N-terminal domain FDF35_09015 PF00043 Glutathione S-transferase, C-terminal domain FDF35_09015 PF13417 Glutathione S-transferase, N-terminal domain FDF35_09025 PF00691 OmpA family FDF35_09025 PF13488 Glycine zipper FDF35_09030 PF01979 Amidohydrolase family FDF35_09035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDF35_09035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDF35_09060 PF02861 Clp amino terminal domain, pathogenicity island component FDF35_09060 PF00004 ATPase family associated with various cellular activities (AAA) FDF35_09060 PF07724 AAA domain (Cdc48 subfamily) FDF35_09060 PF10431 C-terminal, D2-small domain, of ClpB protein FDF35_09060 PF17871 AAA lid domain FDF35_09075 PF02566 OsmC-like protein FDF35_09080 PF13545 Crp-like helix-turn-helix domain FDF35_09080 PF00027 Cyclic nucleotide-binding domain FDF35_09085 PF00248 Aldo/keto reductase family FDF35_09100 PF00709 Adenylosuccinate synthetase FDF35_09105 PF13393 Histidyl-tRNA synthetase FDF35_09110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDF35_09110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDF35_09115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDF35_09115 PF01411 tRNA synthetases class II (A) FDF35_09115 PF02272 DHHA1 domain FDF35_09120 PF13840 ACT domain FDF35_09120 PF01842 ACT domain FDF35_09120 PF00696 Amino acid kinase family FDF35_09125 PF02599 Global regulator protein family FDF35_09130 PF01351 Ribonuclease HII FDF35_09140 PF01292 Prokaryotic cytochrome b561 FDF35_09145 PF00962 Adenosine/AMP deaminase FDF35_09150 PF00860 Permease family FDF35_09160 PF00743 Flavin-binding monooxygenase-like FDF35_09165 PF00106 short chain dehydrogenase FDF35_09175 PF17954 Quercetinase C-terminal cupin domain FDF35_09175 PF02678 Pirin FDF35_09180 PF17932 Tetracyclin repressor-like, C-terminal domain FDF35_09180 PF00440 Bacterial regulatory proteins, tetR family FDF35_09190 PF00106 short chain dehydrogenase FDF35_09195 PF00743 Flavin-binding monooxygenase-like FDF35_09200 PF04072 Leucine carboxyl methyltransferase FDF35_09205 PF12833 Helix-turn-helix domain FDF35_09205 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDF35_09210 PF00743 Flavin-binding monooxygenase-like FDF35_09215 PF00106 short chain dehydrogenase FDF35_09220 PF07859 alpha/beta hydrolase fold FDF35_09225 PF05199 GMC oxidoreductase FDF35_09230 PF03573 outer membrane porin, OprD family FDF35_09235 PF07690 Major Facilitator Superfamily FDF35_09245 PF03781 Sulfatase-modifying factor enzyme 1 FDF35_09255 PF00355 Rieske [2Fe-2S] domain FDF35_09260 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_09260 PF00175 Oxidoreductase NAD-binding domain FDF35_09275 PF07690 Major Facilitator Superfamily FDF35_09280 PF00378 Enoyl-CoA hydratase/isomerase FDF35_09285 PF00171 Aldehyde dehydrogenase family FDF35_09295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_09295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_09295 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_09300 PF03573 outer membrane porin, OprD family FDF35_09315 PF07519 Tannase and feruloyl esterase FDF35_09320 PF00892 EamA-like transporter family FDF35_09340 PF00171 Aldehyde dehydrogenase family FDF35_09345 PF00813 FliP family FDF35_09355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FDF35_09365 PF07559 Flagellar basal body protein FlaE FDF35_09365 PF00460 Flagella basal body rod protein FDF35_09365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDF35_09370 PF03963 Flagellar hook capping protein - N-terminal region FDF35_09400 PF08345 Flagellar M-ring protein C-terminal FDF35_09400 PF01514 Secretory protein of YscJ/FliF family FDF35_09405 PF02049 Flagellar hook-basal body complex protein FliE FDF35_09410 PF00460 Flagella basal body rod protein FDF35_09410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDF35_09420 PF02119 Flagellar P-ring protein FDF35_09425 PF02107 Flagellar L-ring protein FDF35_09435 PF00460 Flagella basal body rod protein FDF35_09435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDF35_09445 PF00771 FHIPEP family FDF35_09450 PF01312 FlhB HrpN YscU SpaS Family FDF35_09455 PF01311 Bacterial export proteins, family 1 FDF35_09460 PF01313 Bacterial export proteins, family 3 FDF35_09515 PF00324 Amino acid permease FDF35_09520 PF04958 Arginine N-succinyltransferase beta subunit FDF35_09525 PF00202 Aminotransferase class-III FDF35_09535 PF00171 Aldehyde dehydrogenase family FDF35_09545 PF07729 FCD domain FDF35_09545 PF00392 Bacterial regulatory proteins, gntR family FDF35_09555 PF00324 Amino acid permease FDF35_09560 PF01266 FAD dependent oxidoreductase FDF35_09575 PF05643 Putative bacterial lipoprotein (DUF799) FDF35_09585 PF03783 Curli production assembly/transport component CsgG FDF35_09630 PF03180 NLPA lipoprotein FDF35_09635 PF01494 FAD binding domain FDF35_09650 PF03466 LysR substrate binding domain FDF35_09650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_09655 PF01266 FAD dependent oxidoreductase FDF35_09660 PF01042 Endoribonuclease L-PSP FDF35_09690 PF01555 DNA methylase FDF35_09785 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FDF35_09790 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system FDF35_09800 PF00589 Phage integrase family FDF35_09800 PF13356 Arm DNA-binding domain FDF35_09810 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_09810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDF35_09815 PF00764 Arginosuccinate synthase FDF35_09820 PF00563 EAL domain FDF35_09820 PF00360 Phytochrome region FDF35_09820 PF01590 GAF domain FDF35_09820 PF00990 Diguanylate cyclase, GGDEF domain FDF35_09825 PF01979 Amidohydrolase family FDF35_09830 PF00929 Exonuclease FDF35_09840 PF00593 TonB dependent receptor FDF35_09840 PF07715 TonB-dependent Receptor Plug Domain FDF35_09845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDF35_09845 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_09850 PF00005 ABC transporter FDF35_09850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDF35_09855 PF12911 N-terminal TM domain of oligopeptide transport permease C FDF35_09855 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_09870 PF01464 Transglycosylase SLT domain FDF35_09870 PF01476 LysM domain FDF35_09870 PF01464 Transglycosylase SLT domain FDF35_09870 PF01476 LysM domain FDF35_09875 PF00929 Exonuclease FDF35_09885 PF00293 NUDIX domain FDF35_09885 PF09297 NADH pyrophosphatase zinc ribbon domain FDF35_09895 PF04972 BON domain FDF35_09900 PF02021 Uncharacterised protein family UPF0102 FDF35_09905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDF35_09915 PF03466 LysR substrate binding domain FDF35_09915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_09920 PF01810 LysE type translocator FDF35_09930 PF13411 MerR HTH family regulatory protein FDF35_09940 PF01494 FAD binding domain FDF35_09945 PF01494 FAD binding domain FDF35_09950 PF05195 Aminopeptidase P, N-terminal domain FDF35_09950 PF00557 Metallopeptidase family M24 FDF35_10035 PF08525 Opacity-associated protein A N-terminal motif FDF35_10035 PF01476 LysM domain FDF35_10035 PF01551 Peptidase family M23 FDF35_10050 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system FDF35_10345 PF01812 5-formyltetrahydrofolate cyclo-ligase family FDF35_10355 PF02190 ATP-dependent protease La (LON) substrate-binding domain FDF35_10355 PF05362 Lon protease (S16) C-terminal proteolytic domain FDF35_10355 PF00004 ATPase family associated with various cellular activities (AAA) FDF35_10365 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FDF35_10375 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDF35_10375 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDF35_10380 PF04060 Putative Fe-S cluster FDF35_10385 PF00730 HhH-GPD superfamily base excision DNA repair protein FDF35_10385 PF10576 Iron-sulfur binding domain of endonuclease III FDF35_10385 PF00633 Helix-hairpin-helix motif FDF35_10395 PF05191 Adenylate kinase, active site lid FDF35_10410 PF00905 Penicillin binding protein transpeptidase domain FDF35_10410 PF03717 Penicillin-binding Protein dimerisation domain FDF35_10430 PF01730 UreF FDF35_10435 PF05194 UreE urease accessory protein, C-terminal domain FDF35_10435 PF02814 UreE urease accessory protein, N-terminal domain FDF35_10440 PF00449 Urease alpha-subunit, N-terminal domain FDF35_10440 PF01979 Amidohydrolase family FDF35_10450 PF00547 Urease, gamma subunit FDF35_10455 PF01774 UreD urease accessory protein FDF35_10470 PF00463 Isocitrate lyase family FDF35_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_10475 PF03466 LysR substrate binding domain FDF35_10480 PF01595 Cyclin M transmembrane N-terminal domain FDF35_10480 PF03471 Transporter associated domain FDF35_10480 PF00571 CBS domain FDF35_10490 PF03600 Citrate transporter FDF35_10505 PF00009 Elongation factor Tu GTP binding domain FDF35_10510 PF01507 Phosphoadenosine phosphosulfate reductase family FDF35_10520 PF14052 Capsule assembly protein Wzi FDF35_10525 PF00152 tRNA synthetases class II (D, K and N) FDF35_10525 PF01336 OB-fold nucleic acid binding domain FDF35_10540 PF00301 Rubredoxin FDF35_10545 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_10545 PF18113 Rubredoxin binding C-terminal domain FDF35_10550 PF00561 alpha/beta hydrolase fold FDF35_10555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_10555 PF03466 LysR substrate binding domain FDF35_10570 PF02503 Polyphosphate kinase middle domain FDF35_10570 PF13090 Polyphosphate kinase C-terminal domain 2 FDF35_10570 PF17941 Polyphosphate kinase C-terminal domain 1 FDF35_10570 PF13089 Polyphosphate kinase N-terminal domain FDF35_10575 PF00912 Transglycosylase FDF35_10580 PF01694 Rhomboid family FDF35_10590 PF00005 ABC transporter FDF35_10595 PF13472 GDSL-like Lipase/Acylhydrolase family FDF35_10600 PF00484 Carbonic anhydrase FDF35_10605 PF00561 alpha/beta hydrolase fold FDF35_10615 PF07715 TonB-dependent Receptor Plug Domain FDF35_10615 PF00593 TonB dependent receptor FDF35_10620 PF01521 Iron-sulphur cluster biosynthesis FDF35_10620 PF01106 NifU-like domain FDF35_10635 PF03781 Sulfatase-modifying factor enzyme 1 FDF35_10650 PF00291 Pyridoxal-phosphate dependent enzyme FDF35_10655 PF01384 Phosphate transporter family FDF35_10660 PF02965 Vitamin B12 dependent methionine synthase, activation domain FDF35_10660 PF02607 B12 binding domain FDF35_10660 PF02310 B12 binding domain FDF35_10660 PF00809 Pterin binding enzyme FDF35_10660 PF02574 Homocysteine S-methyltransferase FDF35_10680 PF02779 Transketolase, pyrimidine binding domain FDF35_10680 PF02780 Transketolase, C-terminal domain FDF35_10690 PF07690 Major Facilitator Superfamily FDF35_10700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_10700 PF03466 LysR substrate binding domain FDF35_10715 PF01263 Aldose 1-epimerase FDF35_10720 PF07690 Major Facilitator Superfamily FDF35_10725 PF12833 Helix-turn-helix domain FDF35_10725 PF02311 AraC-like ligand binding domain FDF35_10740 PF07690 Major Facilitator Superfamily FDF35_10750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDF35_10750 PF00205 Thiamine pyrophosphate enzyme, central domain FDF35_10750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDF35_10755 PF00171 Aldehyde dehydrogenase family FDF35_10770 PF12697 Alpha/beta hydrolase family FDF35_10780 PF07690 Major Facilitator Superfamily FDF35_10785 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_10785 PF14759 Reductase C-terminal FDF35_10790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDF35_10800 PF00355 Rieske [2Fe-2S] domain FDF35_10810 PF00355 Rieske [2Fe-2S] domain FDF35_10815 PF01614 Bacterial transcriptional regulator FDF35_10815 PF09339 IclR helix-turn-helix domain FDF35_10830 PF00378 Enoyl-CoA hydratase/isomerase FDF35_10840 PF00535 Glycosyl transferase family 2 FDF35_10850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDF35_10855 PF07152 YaeQ protein FDF35_10860 PF00375 Sodium:dicarboxylate symporter family FDF35_10865 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDF35_10865 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDF35_10875 PF03061 Thioesterase superfamily FDF35_10885 PF02028 BCCT, betaine/carnitine/choline family transporter FDF35_10890 PF02028 BCCT, betaine/carnitine/choline family transporter FDF35_10895 PF00440 Bacterial regulatory proteins, tetR family FDF35_10895 PF13977 BetI-type transcriptional repressor, C-terminal FDF35_10900 PF00171 Aldehyde dehydrogenase family FDF35_10905 PF05199 GMC oxidoreductase FDF35_10905 PF00732 GMC oxidoreductase FDF35_10910 PF06039 Malate:quinone oxidoreductase (Mqo) FDF35_10920 PF02574 Homocysteine S-methyltransferase FDF35_10925 PF13520 Amino acid permease FDF35_10950 PF01126 Heme oxygenase FDF35_10970 PF07715 TonB-dependent Receptor Plug Domain FDF35_10970 PF00593 TonB dependent receptor FDF35_10980 PF04542 Sigma-70 region 2 FDF35_10980 PF08281 Sigma-70, region 4 FDF35_10990 PF00701 Dihydrodipicolinate synthetase family FDF35_10995 PF00083 Sugar (and other) transporter FDF35_11165 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FDF35_11365 PF01695 IstB-like ATP binding protein FDF35_11375 PF00145 C-5 cytosine-specific DNA methylase FDF35_11455 PF00929 Exonuclease FDF35_11525 PF07690 Major Facilitator Superfamily FDF35_11530 PF13533 Biotin-lipoyl like FDF35_11535 PF03061 Thioesterase superfamily FDF35_11540 PF00490 Delta-aminolevulinic acid dehydratase FDF35_11545 PF01266 FAD dependent oxidoreductase FDF35_11550 PF08338 Domain of unknown function (DUF1731) FDF35_11550 PF01370 NAD dependent epimerase/dehydratase family FDF35_11570 PF00149 Calcineurin-like phosphoesterase FDF35_11570 PF12320 Type 5 capsule protein repressor C-terminal domain FDF35_11585 PF01168 Alanine racemase, N-terminal domain FDF35_11590 PF00437 Type II/IV secretion system protein FDF35_11595 PF00437 Type II/IV secretion system protein FDF35_11600 PF01475 Ferric uptake regulator family FDF35_11605 PF04355 SmpA / OmlA family FDF35_11610 PF03658 RnfH family Ubiquitin FDF35_11625 PF01814 Hemerythrin HHE cation binding domain FDF35_11630 PF13230 Glutamine amidotransferases class-II FDF35_11640 PF00696 Amino acid kinase family FDF35_11645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDF35_11645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDF35_11645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDF35_11645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDF35_11650 PF00692 dUTPase FDF35_11655 PF00580 UvrD/REP helicase N-terminal domain FDF35_11655 PF13361 UvrD-like helicase C-terminal domain FDF35_11660 PF13488 Glycine zipper FDF35_11660 PF00691 OmpA family FDF35_11665 PF01553 Acyltransferase FDF35_11675 PF03775 Septum formation inhibitor MinC, C-terminal domain FDF35_11680 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FDF35_11685 PF03776 Septum formation topological specificity factor MinE FDF35_11700 PF01810 LysE type translocator FDF35_11705 PF09397 Ftsk gamma domain FDF35_11705 PF01580 FtsK/SpoIIIE family FDF35_11705 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FDF35_11705 PF17854 FtsK alpha domain FDF35_11710 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_11715 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FDF35_11720 PF04377 Arginine-tRNA-protein transferase, C terminus FDF35_11720 PF04376 Arginine-tRNA-protein transferase, N terminus FDF35_11725 PF00583 Acetyltransferase (GNAT) family FDF35_11740 PF03143 Elongation factor Tu C-terminal domain FDF35_11740 PF00009 Elongation factor Tu GTP binding domain FDF35_11740 PF03144 Elongation factor Tu domain 2 FDF35_11745 PF00679 Elongation factor G C-terminus FDF35_11745 PF14492 Elongation Factor G, domain II FDF35_11745 PF03764 Elongation factor G, domain IV FDF35_11745 PF03144 Elongation factor Tu domain 2 FDF35_11745 PF00009 Elongation factor Tu GTP binding domain FDF35_11750 PF00177 Ribosomal protein S7p/S5e FDF35_11755 PF00164 Ribosomal protein S12/S23 FDF35_11765 PF00109 Beta-ketoacyl synthase, N-terminal domain FDF35_11765 PF02801 Beta-ketoacyl synthase, C-terminal domain FDF35_11785 PF02540 NAD synthase FDF35_11785 PF00795 Carbon-nitrogen hydrolase FDF35_11800 PF00970 Oxidoreductase FAD-binding domain FDF35_11800 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_11800 PF00175 Oxidoreductase NAD-binding domain FDF35_11805 PF00171 Aldehyde dehydrogenase family FDF35_11810 PF00355 Rieske [2Fe-2S] domain FDF35_11810 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDF35_11815 PF07859 alpha/beta hydrolase fold FDF35_11820 PF02028 BCCT, betaine/carnitine/choline family transporter FDF35_11825 PF00180 Isocitrate/isopropylmalate dehydrogenase FDF35_11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_11830 PF03466 LysR substrate binding domain FDF35_11850 PF00037 4Fe-4S binding domain FDF35_11855 PF01467 Cytidylyltransferase-like FDF35_11860 PF01668 SmpB protein FDF35_11875 PF00849 RNA pseudouridylate synthase FDF35_11875 PF01479 S4 domain FDF35_11880 PF13525 Outer membrane lipoprotein FDF35_11885 PF08275 DNA primase catalytic core, N-terminal domain FDF35_11885 PF08278 DNA primase DnaG DnaB-binding FDF35_11885 PF10410 DnaB-helicase binding domain of primase FDF35_11885 PF01807 CHC2 zinc finger FDF35_11890 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FDF35_11890 PF01488 Shikimate / quinate 5-dehydrogenase FDF35_11890 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FDF35_11900 PF03550 Outer membrane lipoprotein LolB FDF35_11905 PF08544 GHMP kinases C terminal FDF35_11905 PF00288 GHMP kinases N terminal domain FDF35_11930 PF14572 Phosphoribosyl synthetase-associated domain FDF35_11930 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDF35_11935 PF01386 Ribosomal L25p family FDF35_11940 PF01195 Peptidyl-tRNA hydrolase FDF35_11945 PF02261 Aspartate decarboxylase FDF35_11960 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDF35_11970 PF08543 Phosphomethylpyrimidine kinase FDF35_11970 PF03070 TENA/THI-4/PQQC family FDF35_11970 PF02581 Thiamine monophosphate synthase FDF35_11975 PF04972 BON domain FDF35_11975 PF01476 LysM domain FDF35_11980 PF00550 Phosphopantetheine attachment site FDF35_11990 PF00698 Acyl transferase domain FDF35_11995 PF01783 Ribosomal L32p protein family FDF35_12000 PF02620 Large ribosomal RNA subunit accumulation protein YceD FDF35_12005 PF04315 Elongation factor P hydroxylase FDF35_12010 PF01300 Telomere recombination FDF35_12015 PF02616 Segregation and condensation protein ScpA FDF35_12020 PF04079 Segregation and condensation complex subunit ScpB FDF35_12025 PF00849 RNA pseudouridylate synthase FDF35_12025 PF01479 S4 domain FDF35_12040 PF00155 Aminotransferase class I and II FDF35_12045 PF00202 Aminotransferase class-III FDF35_12045 PF06968 Biotin and Thiamin Synthesis associated domain FDF35_12045 PF04055 Radical SAM superfamily FDF35_12050 PF12697 Alpha/beta hydrolase family FDF35_12050 PF08241 Methyltransferase domain FDF35_12055 PF02358 Trehalose-phosphatase FDF35_12060 PF00982 Glycosyltransferase family 20 FDF35_12065 PF07690 Major Facilitator Superfamily FDF35_12070 PF00210 Ferritin-like domain FDF35_12085 PF06470 SMC proteins Flexible Hinge Domain FDF35_12085 PF02463 RecF/RecN/SMC N terminal domain FDF35_12095 PF01925 Sulfite exporter TauE/SafE FDF35_12105 PF03309 Type III pantothenate kinase FDF35_12110 PF02978 Signal peptide binding domain FDF35_12110 PF00448 SRP54-type protein, GTPase domain FDF35_12110 PF02881 SRP54-type protein, helical bundle domain FDF35_12120 PF01207 Dihydrouridine synthase (Dus) FDF35_12155 PF00692 dUTPase FDF35_12170 PF01048 Phosphorylase superfamily FDF35_12180 PF10609 NUBPL iron-transfer P-loop NTPase FDF35_12190 PF09334 tRNA synthetases class I (M) FDF35_12190 PF01588 Putative tRNA binding domain FDF35_12215 PF13533 Biotin-lipoyl like FDF35_12220 PF00291 Pyridoxal-phosphate dependent enzyme FDF35_12250 PF00970 Oxidoreductase FAD-binding domain FDF35_12250 PF00175 Oxidoreductase NAD-binding domain FDF35_12255 PF03466 LysR substrate binding domain FDF35_12255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_12260 PF00313 'Cold-shock' DNA-binding domain FDF35_12270 PF00361 Proton-conducting membrane transporter FDF35_12275 PF00361 Proton-conducting membrane transporter FDF35_12280 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDF35_12280 PF00361 Proton-conducting membrane transporter FDF35_12285 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDF35_12290 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FDF35_12295 PF12838 4Fe-4S dicluster domain FDF35_12300 PF00146 NADH dehydrogenase FDF35_12305 PF00384 Molybdopterin oxidoreductase FDF35_12305 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FDF35_12305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDF35_12310 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FDF35_12310 PF10531 SLBB domain FDF35_12310 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FDF35_12320 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FDF35_12320 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FDF35_12325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FDF35_12330 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FDF35_12335 PF00990 Diguanylate cyclase, GGDEF domain FDF35_12335 PF17151 Periplasmic sensor domain FDF35_12345 PF00672 HAMP domain FDF35_12345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_12345 PF00512 His Kinase A (phospho-acceptor) domain FDF35_12350 PF00072 Response regulator receiver domain FDF35_12350 PF00486 Transcriptional regulatory protein, C terminal FDF35_12360 PF02867 Ribonucleotide reductase, barrel domain FDF35_12360 PF00317 Ribonucleotide reductase, all-alpha domain FDF35_12360 PF03477 ATP cone domain FDF35_12370 PF00268 Ribonucleotide reductase, small chain FDF35_12385 PF17074 Darcynin, domain of unknown function FDF35_12395 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system FDF35_12420 PF01613 Flavin reductase like domain FDF35_12425 PF01717 Cobalamin-independent synthase, Catalytic domain FDF35_12425 PF08267 Cobalamin-independent synthase, N-terminal domain FDF35_12435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_12435 PF03466 LysR substrate binding domain FDF35_12440 PF01810 LysE type translocator FDF35_12450 PF12833 Helix-turn-helix domain FDF35_12450 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDF35_12455 PF07687 Peptidase dimerisation domain FDF35_12455 PF01546 Peptidase family M20/M25/M40 FDF35_12465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_12465 PF03466 LysR substrate binding domain FDF35_12475 PF07690 Major Facilitator Superfamily FDF35_12485 PF03466 LysR substrate binding domain FDF35_12485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_12490 PF00890 FAD binding domain FDF35_12490 PF14537 Cytochrome c3 FDF35_12500 PF02515 CoA-transferase family III FDF35_12505 PF07690 Major Facilitator Superfamily FDF35_12510 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_12510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_12510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_12515 PF03466 LysR substrate binding domain FDF35_12515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_12520 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_12520 PF00107 Zinc-binding dehydrogenase FDF35_12525 PF00962 Adenosine/AMP deaminase FDF35_12555 PF02445 Quinolinate synthetase A protein FDF35_12560 PF01960 ArgJ family FDF35_12565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDF35_12565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDF35_12570 PF00893 Small Multidrug Resistance protein FDF35_12585 PF07732 Multicopper oxidase FDF35_12585 PF00394 Multicopper oxidase FDF35_12585 PF07731 Multicopper oxidase FDF35_12600 PF00834 Ribulose-phosphate 3 epimerase family FDF35_12610 PF00756 Putative esterase FDF35_12620 PF04445 Putative SAM-dependent methyltransferase FDF35_12625 PF00814 Glycoprotease family FDF35_12630 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_12635 PF00293 NUDIX domain FDF35_12680 PF00155 Aminotransferase class I and II FDF35_12685 PF00815 Histidinol dehydrogenase FDF35_12690 PF01634 ATP phosphoribosyltransferase FDF35_12695 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDF35_12700 PF01722 BolA-like protein FDF35_12705 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FDF35_12710 PF04552 Sigma-54, DNA binding domain FDF35_12710 PF00309 Sigma-54 factor, Activator interacting domain (AID) FDF35_12710 PF04963 Sigma-54 factor, core binding domain FDF35_12755 PF00795 Carbon-nitrogen hydrolase FDF35_12765 PF01047 MarR family FDF35_12770 PF02566 OsmC-like protein FDF35_12775 PF00437 Type II/IV secretion system protein FDF35_12800 PF00476 DNA polymerase family A FDF35_12800 PF01612 3'-5' exonuclease FDF35_12800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FDF35_12800 PF01367 5'-3' exonuclease, C-terminal SAM fold FDF35_12805 PF02325 YGGT family FDF35_12810 PF03807 NADP oxidoreductase coenzyme F420-dependent FDF35_12810 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDF35_12815 PF01171 PP-loop family FDF35_12815 PF11734 TilS substrate C-terminal domain FDF35_12815 PF09179 TilS substrate binding domain FDF35_12820 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FDF35_12825 PF02541 Ppx/GppA phosphatase family FDF35_12830 PF00085 Thioredoxin FDF35_12835 PF07497 Rho termination factor, RNA-binding domain FDF35_12835 PF07498 Rho termination factor, N-terminal domain FDF35_12835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDF35_12850 PF00216 Bacterial DNA-binding protein FDF35_12855 PF03147 Ferredoxin-fold anticodon binding domain FDF35_12855 PF03484 tRNA synthetase B5 domain FDF35_12855 PF01588 Putative tRNA binding domain FDF35_12855 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FDF35_12855 PF03483 B3/4 domain FDF35_12860 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FDF35_12860 PF01409 tRNA synthetases class II core domain (F) FDF35_12880 PF00453 Ribosomal protein L20 FDF35_12885 PF01632 Ribosomal protein L35 FDF35_12890 PF07690 Major Facilitator Superfamily FDF35_12895 PF09335 SNARE associated Golgi protein FDF35_12900 PF00043 Glutathione S-transferase, C-terminal domain FDF35_12900 PF02798 Glutathione S-transferase, N-terminal domain FDF35_12910 PF00707 Translation initiation factor IF-3, C-terminal domain FDF35_12910 PF05198 Translation initiation factor IF-3, N-terminal domain FDF35_12915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDF35_12915 PF03129 Anticodon binding domain FDF35_12915 PF02824 TGS domain FDF35_12915 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDF35_12920 PF13193 AMP-binding enzyme C-terminal domain FDF35_12920 PF00501 AMP-binding enzyme FDF35_12925 PF04751 Protein of unknown function (DUF615) FDF35_12930 PF00381 PTS HPr component phosphorylation site FDF35_12935 PF03668 P-loop ATPase protein family FDF35_12940 PF02569 Pantoate-beta-alanine ligase FDF35_12945 PF02548 Ketopantoate hydroxymethyltransferase FDF35_12950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FDF35_12955 PF01743 Poly A polymerase head domain FDF35_12955 PF12626 Polymerase A arginine-rich C-terminus FDF35_12955 PF12627 Probable RNA and SrmB- binding site of polymerase A FDF35_12965 PF03819 MazG nucleotide pyrophosphohydrolase domain FDF35_12975 PF02824 TGS domain FDF35_12975 PF04607 Region found in RelA / SpoT proteins FDF35_12975 PF13291 ACT domain FDF35_12980 PF05958 tRNA (Uracil-5-)-methyltransferase FDF35_12990 PF00291 Pyridoxal-phosphate dependent enzyme FDF35_12995 PF01627 Hpt domain FDF35_12995 PF00672 HAMP domain FDF35_12995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_12995 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDF35_12995 PF00072 Response regulator receiver domain FDF35_12995 PF00512 His Kinase A (phospho-acceptor) domain FDF35_13000 PF00378 Enoyl-CoA hydratase/isomerase FDF35_13005 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDF35_13005 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDF35_13010 PF01261 Xylose isomerase-like TIM barrel FDF35_13020 PF00106 short chain dehydrogenase FDF35_13025 PF02233 NAD(P) transhydrogenase beta subunit FDF35_13030 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FDF35_13035 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FDF35_13035 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FDF35_13040 PF00892 EamA-like transporter family FDF35_13050 PF07690 Major Facilitator Superfamily FDF35_13055 PF01207 Dihydrouridine synthase (Dus) FDF35_13065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_13065 PF03466 LysR substrate binding domain FDF35_13075 PF00899 ThiF family FDF35_13085 PF01026 TatD related DNase FDF35_13100 PF03144 Elongation factor Tu domain 2 FDF35_13100 PF16658 Class II release factor RF3, C-terminal domain FDF35_13100 PF00009 Elongation factor Tu GTP binding domain FDF35_13130 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FDF35_13130 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDF35_13135 PF10369 Small subunit of acetolactate synthase FDF35_13140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDF35_13140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDF35_13140 PF00205 Thiamine pyrophosphate enzyme, central domain FDF35_13150 PF08264 Anticodon-binding domain of tRNA FDF35_13150 PF00133 tRNA synthetases class I (I, L, M and V) FDF35_13150 PF13603 Leucyl-tRNA synthetase, Domain 2 FDF35_13150 PF09334 tRNA synthetases class I (M) FDF35_13165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDF35_13175 PF02321 Outer membrane efflux protein FDF35_13190 PF00929 Exonuclease FDF35_13195 PF03193 RsgA GTPase FDF35_13205 PF00462 Glutaredoxin FDF35_13210 PF02556 Preprotein translocase subunit SecB FDF35_13220 PF01926 50S ribosome-binding GTPase FDF35_13220 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FDF35_13225 PF13360 PQQ-like domain FDF35_13235 PF03129 Anticodon binding domain FDF35_13235 PF13393 Histidyl-tRNA synthetase FDF35_13240 PF04551 GcpE protein FDF35_13245 PF13464 Domain of unknown function (DUF4115) FDF35_13255 PF04055 Radical SAM superfamily FDF35_13260 PF00334 Nucleoside diphosphate kinase FDF35_13265 PF04384 Iron-sulphur cluster assembly FDF35_13270 PF01569 PAP2 superfamily FDF35_13275 PF13439 Glycosyltransferase Family 4 FDF35_13275 PF00534 Glycosyl transferases group 1 FDF35_13280 PF17804 Tail specific protease N-terminal domain FDF35_13280 PF03572 Peptidase family S41 FDF35_13280 PF00595 PDZ domain FDF35_13280 PF11818 C-terminal domain of tail specific protease (DUF3340) FDF35_13285 PF00933 Glycosyl hydrolase family 3 N terminal domain FDF35_13295 PF00561 alpha/beta hydrolase fold FDF35_13300 PF00171 Aldehyde dehydrogenase family FDF35_13305 PF00171 Aldehyde dehydrogenase family FDF35_13310 PF01202 Shikimate kinase FDF35_13315 PF02447 GntP family permease FDF35_13320 PF01081 KDPG and KHG aldolase FDF35_13325 PF00920 Dehydratase family FDF35_13330 PF00871 Acetokinase family FDF35_13335 PF07085 DRTGG domain FDF35_13335 PF01515 Phosphate acetyl/butaryl transferase FDF35_13340 PF05681 Fumarate hydratase (Fumerase) FDF35_13340 PF05683 Fumarase C-terminus FDF35_13355 PF07724 AAA domain (Cdc48 subfamily) FDF35_13355 PF06689 ClpX C4-type zinc finger FDF35_13355 PF10431 C-terminal, D2-small domain, of ClpB protein FDF35_13360 PF00574 Clp protease FDF35_13365 PF05698 Bacterial trigger factor protein (TF) C-terminus FDF35_13365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDF35_13365 PF05697 Bacterial trigger factor protein (TF) FDF35_13370 PF00593 TonB dependent receptor FDF35_13370 PF07715 TonB-dependent Receptor Plug Domain FDF35_13375 PF18331 PKHD-type hydroxylase C-terminal domain FDF35_13375 PF13640 2OG-Fe(II) oxygenase superfamily FDF35_13380 PF00682 HMGL-like FDF35_13380 PF08502 LeuA allosteric (dimerisation) domain FDF35_13385 PF00561 alpha/beta hydrolase fold FDF35_13390 PF00561 alpha/beta hydrolase fold FDF35_13390 PF07021 Methionine biosynthesis protein MetW FDF35_13405 PF01725 Ham1 family FDF35_13415 PF02416 mttA/Hcf106 family FDF35_13425 PF00902 Sec-independent protein translocase protein (TatC) FDF35_13445 PF01790 Prolipoprotein diacylglyceryl transferase FDF35_13465 PF00186 Dihydrofolate reductase FDF35_13475 PF01625 Peptide methionine sulfoxide reductase FDF35_13485 PF01618 MotA/TolQ/ExbB proton channel family FDF35_13495 PF01842 ACT domain FDF35_13495 PF00551 Formyl transferase FDF35_13505 PF00171 Aldehyde dehydrogenase family FDF35_13510 PF00830 Ribosomal L28 family FDF35_13515 PF00471 Ribosomal protein L33 FDF35_13520 PF00999 Sodium/hydrogen exchanger family FDF35_13520 PF02254 TrkA-N domain FDF35_13540 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FDF35_13545 PF00580 UvrD/REP helicase N-terminal domain FDF35_13545 PF13361 UvrD-like helicase C-terminal domain FDF35_13560 PF01396 Topoisomerase DNA binding C4 zinc finger FDF35_13560 PF01751 Toprim domain FDF35_13560 PF08272 Topoisomerase I zinc-ribbon-like FDF35_13560 PF01131 DNA topoisomerase FDF35_13570 PF01638 HxlR-like helix-turn-helix FDF35_13575 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_13575 PF00107 Zinc-binding dehydrogenase FDF35_13590 PF01810 LysE type translocator FDF35_13595 PF03279 Bacterial lipid A biosynthesis acyltransferase FDF35_13605 PF00375 Sodium:dicarboxylate symporter family FDF35_13615 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDF35_13615 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDF35_13635 PF01416 tRNA pseudouridine synthase FDF35_13645 PF01176 Translation initiation factor 1A / IF-1 FDF35_13660 PF00180 Isocitrate/isopropylmalate dehydrogenase FDF35_13670 PF00694 Aconitase C-terminal domain FDF35_13685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_13685 PF03466 LysR substrate binding domain FDF35_13705 PF00293 NUDIX domain FDF35_13710 PF02896 PEP-utilising enzyme, TIM barrel domain FDF35_13710 PF01590 GAF domain FDF35_13710 PF05524 PEP-utilising enzyme, N-terminal FDF35_13710 PF00391 PEP-utilising enzyme, mobile domain FDF35_13715 PF00141 Peroxidase FDF35_13720 PF12706 Beta-lactamase superfamily domain FDF35_13725 PF03466 LysR substrate binding domain FDF35_13725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_13735 PF02798 Glutathione S-transferase, N-terminal domain FDF35_13740 PF13280 WYL domain FDF35_13740 PF08279 HTH domain FDF35_13745 PF13419 Haloacid dehalogenase-like hydrolase FDF35_13750 PF01479 S4 domain FDF35_13750 PF00849 RNA pseudouridylate synthase FDF35_13760 PF10150 Ribonuclease E/G family FDF35_13760 PF00575 S1 RNA binding domain FDF35_13760 PF12111 Polyribonucleotide phosphorylase C terminal FDF35_13765 PF00501 AMP-binding enzyme FDF35_13765 PF13193 AMP-binding enzyme C-terminal domain FDF35_13780 PF03466 LysR substrate binding domain FDF35_13780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_13785 PF00106 short chain dehydrogenase FDF35_13790 PF06969 HemN C-terminal domain FDF35_13790 PF04055 Radical SAM superfamily FDF35_13800 PF01554 MatE FDF35_13805 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDF35_13805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_13805 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_13810 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDF35_13810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_13815 PF03109 ABC1 family FDF35_13820 PF01197 Ribosomal protein L31 FDF35_13855 PF03884 DNA gyrase inhibitor YacG FDF35_13865 PF00762 Ferrochelatase FDF35_13875 PF01177 Asp/Glu/Hydantoin racemase FDF35_13895 PF01206 Sulfurtransferase TusA FDF35_13900 PF00571 CBS domain FDF35_13900 PF03471 Transporter associated domain FDF35_13905 PF00795 Carbon-nitrogen hydrolase FDF35_13910 PF01588 Putative tRNA binding domain FDF35_13920 PF07963 Prokaryotic N-terminal methylation motif FDF35_13920 PF08334 Type II secretion system (T2SS), protein G FDF35_13925 PF00482 Type II secretion system (T2SS), protein F FDF35_13930 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FDF35_13930 PF00270 DEAD/DEAH box helicase FDF35_13930 PF00271 Helicase conserved C-terminal domain FDF35_13930 PF17764 3′ DNA-binding domain (3′BD) FDF35_13930 PF18074 Primosomal protein N C-terminal domain FDF35_13935 PF02254 TrkA-N domain FDF35_13935 PF00999 Sodium/hydrogen exchanger family FDF35_13940 PF01430 Hsp33 protein FDF35_13950 PF00226 DnaJ domain FDF35_13950 PF01556 DnaJ C terminal domain FDF35_13960 PF01544 CorA-like Mg2+ transporter protein FDF35_13965 PF00575 S1 RNA binding domain FDF35_13965 PF03725 3' exoribonuclease family, domain 2 FDF35_13965 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FDF35_13965 PF00013 KH domain FDF35_13965 PF01138 3' exoribonuclease family, domain 1 FDF35_13970 PF00312 Ribosomal protein S15 FDF35_13980 PF13538 UvrD-like helicase C-terminal domain FDF35_13985 PF13361 UvrD-like helicase C-terminal domain FDF35_13985 PF00580 UvrD/REP helicase N-terminal domain FDF35_13985 PF12705 PD-(D/E)XK nuclease superfamily FDF35_13990 PF17946 RecC C-terminal domain FDF35_14000 PF03976 Polyphosphate kinase 2 (PPK2) FDF35_14010 PF01209 ubiE/COQ5 methyltransferase family FDF35_14025 PF01494 FAD binding domain FDF35_14030 PF01502 Phosphoribosyl-AMP cyclohydrolase FDF35_14045 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FDF35_14045 PF00361 Proton-conducting membrane transporter FDF35_14045 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDF35_14045 PF13244 Domain of unknown function (DUF4040) FDF35_14050 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDF35_14055 PF00361 Proton-conducting membrane transporter FDF35_14065 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FDF35_14075 PF02033 Ribosome-binding factor A FDF35_14080 PF00009 Elongation factor Tu GTP binding domain FDF35_14080 PF11987 Translation-initiation factor 2 FDF35_14080 PF04760 Translation initiation factor IF-2, N-terminal region FDF35_14080 PF08364 Bacterial translation initiation factor IF-2 associated region FDF35_14085 PF13184 NusA-like KH domain FDF35_14085 PF08529 NusA N-terminal domain FDF35_14085 PF00575 S1 RNA binding domain FDF35_14090 PF02576 RimP N-terminal domain FDF35_14090 PF17384 RimP C-terminal SH3 domain FDF35_14110 PF03840 Preprotein translocase SecG subunit FDF35_14115 PF00121 Triosephosphate isomerase FDF35_14120 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDF35_14120 PF00437 Type II/IV secretion system protein FDF35_14125 PF00482 Type II secretion system (T2SS), protein F FDF35_14130 PF01478 Type IV leader peptidase family FDF35_14130 PF06750 Bacterial Peptidase A24 N-terminal domain FDF35_14135 PF01121 Dephospho-CoA kinase FDF35_14145 PF00588 SpoU rRNA Methylase family FDF35_14145 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDF35_14150 PF06865 Pyrimidine/purine nucleoside phosphorylase FDF35_14160 PF02463 RecF/RecN/SMC N terminal domain FDF35_14165 PF02622 Uncharacterized ACR, COG1678 FDF35_14170 PF03652 Holliday junction resolvase FDF35_14175 PF13533 Biotin-lipoyl like FDF35_14200 PF12833 Helix-turn-helix domain FDF35_14200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDF35_14200 PF02805 Metal binding domain of Ada FDF35_14200 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDF35_14205 PF01066 CDP-alcohol phosphatidyltransferase FDF35_14215 PF08459 UvrC Helix-hairpin-helix N-terminal FDF35_14215 PF02151 UvrB/uvrC motif FDF35_14215 PF01541 GIY-YIG catalytic domain FDF35_14230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDF35_14230 PF00378 Enoyl-CoA hydratase/isomerase FDF35_14230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDF35_14235 PF02803 Thiolase, C-terminal domain FDF35_14235 PF00108 Thiolase, N-terminal domain FDF35_14250 PF09278 MerR, DNA binding FDF35_14250 PF00376 MerR family regulatory protein FDF35_14260 PF01323 DSBA-like thioredoxin domain FDF35_14275 PF00183 Hsp90 protein FDF35_14275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_14290 PF13726 Na+-H+ antiporter family FDF35_14290 PF03553 Na+/H+ antiporter family FDF35_14295 PF00561 alpha/beta hydrolase fold FDF35_14315 PF04997 RNA polymerase Rpb1, domain 1 FDF35_14315 PF00623 RNA polymerase Rpb1, domain 2 FDF35_14315 PF04998 RNA polymerase Rpb1, domain 5 FDF35_14315 PF04983 RNA polymerase Rpb1, domain 3 FDF35_14315 PF05000 RNA polymerase Rpb1, domain 4 FDF35_14320 PF04565 RNA polymerase Rpb2, domain 3 FDF35_14320 PF04561 RNA polymerase Rpb2, domain 2 FDF35_14320 PF04560 RNA polymerase Rpb2, domain 7 FDF35_14320 PF04563 RNA polymerase beta subunit FDF35_14320 PF10385 RNA polymerase beta subunit external 1 domain FDF35_14320 PF00562 RNA polymerase Rpb2, domain 6 FDF35_14325 PF16320 Ribosomal protein L7/L12 dimerisation domain FDF35_14325 PF00542 Ribosomal protein L7/L12 C-terminal domain FDF35_14330 PF00466 Ribosomal protein L10 FDF35_14335 PF00687 Ribosomal protein L1p/L10e family FDF35_14340 PF00298 Ribosomal protein L11, RNA binding domain FDF35_14340 PF03946 Ribosomal protein L11, N-terminal domain FDF35_14345 PF00467 KOW motif FDF35_14345 PF02357 Transcription termination factor nusG FDF35_14350 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FDF35_14360 PF03143 Elongation factor Tu C-terminal domain FDF35_14360 PF03144 Elongation factor Tu domain 2 FDF35_14360 PF00009 Elongation factor Tu GTP binding domain FDF35_14385 PF04715 Anthranilate synthase component I, N terminal region FDF35_14385 PF00425 chorismate binding enzyme FDF35_14390 PF13419 Haloacid dehalogenase-like hydrolase FDF35_14395 PF12401 Protein of unknown function (DUF2662) FDF35_14395 PF00498 FHA domain FDF35_14400 PF03958 Bacterial type II/III secretion system short domain FDF35_14400 PF00263 Bacterial type II and III secretion system protein FDF35_14415 PF00816 H-NS histone family FDF35_14440 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FDF35_14440 PF03900 Porphobilinogen deaminase, C-terminal domain FDF35_14445 PF04397 LytTr DNA-binding domain FDF35_14445 PF00072 Response regulator receiver domain FDF35_14450 PF06580 Histidine kinase FDF35_14450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_14450 PF07694 5TMR of 5TMR-LYT FDF35_14455 PF00206 Lyase FDF35_14455 PF14698 Argininosuccinate lyase C-terminal FDF35_14460 PF04362 Bacterial Fe(2+) trafficking FDF35_14465 PF01895 PhoU domain FDF35_14470 PF02321 Outer membrane efflux protein FDF35_14475 PF00892 EamA-like transporter family FDF35_14490 PF13667 ThiC-associated domain FDF35_14490 PF01964 Radical SAM ThiC family FDF35_14495 PF00293 NUDIX domain FDF35_14500 PF00149 Calcineurin-like phosphoesterase FDF35_14505 PF01258 Prokaryotic dksA/traR C4-type zinc finger FDF35_14515 PF01098 Cell cycle protein FDF35_14520 PF02875 Mur ligase family, glutamate ligase domain FDF35_14520 PF08245 Mur ligase middle domain FDF35_14530 PF07670 Nucleoside recognition FDF35_14530 PF02421 Ferrous iron transport protein B FDF35_14530 PF07664 Ferrous iron transport protein B C terminus FDF35_14540 PF00589 Phage integrase family FDF35_14540 PF02899 Phage integrase, N-terminal SAM-like domain FDF35_14545 PF13098 Thioredoxin-like domain FDF35_14545 PF10411 Disulfide bond isomerase protein N-terminus FDF35_14550 PF01842 ACT domain FDF35_14550 PF00742 Homoserine dehydrogenase FDF35_14550 PF03447 Homoserine dehydrogenase, NAD binding domain FDF35_14555 PF00291 Pyridoxal-phosphate dependent enzyme FDF35_14560 PF00768 D-alanyl-D-alanine carboxypeptidase FDF35_14565 PF00196 Bacterial regulatory proteins, luxR family FDF35_14565 PF00072 Response regulator receiver domain FDF35_14570 PF00512 His Kinase A (phospho-acceptor) domain FDF35_14570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_14575 PF00072 Response regulator receiver domain FDF35_14575 PF00158 Sigma-54 interaction domain FDF35_14575 PF02954 Bacterial regulatory protein, Fis family FDF35_14580 PF03572 Peptidase family S41 FDF35_14580 PF00595 PDZ domain FDF35_14585 PF01676 Metalloenzyme superfamily FDF35_14585 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FDF35_14590 PF03739 Lipopolysaccharide export system permease LptF/LptG FDF35_14600 PF02789 Cytosol aminopeptidase family, N-terminal domain FDF35_14600 PF00883 Cytosol aminopeptidase family, catalytic domain FDF35_14620 PF00677 Lumazine binding domain FDF35_14630 PF01872 RibD C-terminal domain FDF35_14630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDF35_14635 PF03477 ATP cone domain FDF35_14640 PF00909 Ammonium Transporter Family FDF35_14645 PF00543 Nitrogen regulatory protein P-II FDF35_14655 PF01078 Magnesium chelatase, subunit ChlI FDF35_14655 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDF35_14670 PF00905 Penicillin binding protein transpeptidase domain FDF35_14695 PF01740 STAS domain FDF35_14695 PF00916 Sulfate permease family FDF35_14700 PF00582 Universal stress protein family FDF35_14730 PF00665 Integrase core domain FDF35_14740 PF01078 Magnesium chelatase, subunit ChlI FDF35_14740 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDF35_14745 PF00155 Aminotransferase class I and II FDF35_14745 PF00392 Bacterial regulatory proteins, gntR family FDF35_14750 PF00596 Class II Aldolase and Adducin N-terminal domain FDF35_14755 PF00701 Dihydrodipicolinate synthetase family FDF35_14770 PF03573 outer membrane porin, OprD family FDF35_14775 PF00719 Inorganic pyrophosphatase FDF35_14795 PF00521 DNA gyrase/topoisomerase IV, subunit A FDF35_14795 PF03989 DNA gyrase C-terminal domain, beta-propeller FDF35_14800 PF07690 Major Facilitator Superfamily FDF35_14805 PF03458 UPF0126 domain FDF35_14810 PF02810 SEC-C motif FDF35_14815 PF03741 Integral membrane protein TerC family FDF35_14815 PF03471 Transporter associated domain FDF35_14820 PF03641 Possible lysine decarboxylase FDF35_14825 PF07690 Major Facilitator Superfamily FDF35_14835 PF11798 IMS family HHH motif FDF35_14835 PF00817 impB/mucB/samB family FDF35_14835 PF11799 impB/mucB/samB family C-terminal domain FDF35_14850 PF08497 Radical SAM N-terminal FDF35_14850 PF04055 Radical SAM superfamily FDF35_14850 PF11842 Domain of unknown function (DUF3362) FDF35_14870 PF03358 NADPH-dependent FMN reductase FDF35_14915 PF00440 Bacterial regulatory proteins, tetR family FDF35_14940 PF01327 Polypeptide deformylase FDF35_14950 PF17782 DprA winged helix domain FDF35_14950 PF02481 DNA recombination-mediator protein A FDF35_14960 PF00892 EamA-like transporter family FDF35_14965 PF00440 Bacterial regulatory proteins, tetR family FDF35_14970 PF07690 Major Facilitator Superfamily FDF35_14980 PF00255 Glutathione peroxidase FDF35_14990 PF11008 Protein of unknown function (DUF2846) FDF35_14995 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FDF35_15000 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDF35_15000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDF35_15005 PF00231 ATP synthase FDF35_15010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDF35_15010 PF00306 ATP synthase alpha/beta chain, C terminal domain FDF35_15010 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDF35_15015 PF00213 ATP synthase delta (OSCP) subunit FDF35_15020 PF00430 ATP synthase B/B' CF(0) FDF35_15025 PF00137 ATP synthase subunit C FDF35_15030 PF00119 ATP synthase A chain FDF35_15050 PF00005 ABC transporter FDF35_15060 PF01810 LysE type translocator FDF35_15065 PF04261 Dyp-type peroxidase family FDF35_15075 PF00390 Malic enzyme, N-terminal domain FDF35_15075 PF03949 Malic enzyme, NAD binding domain FDF35_15110 PF03551 Transcriptional regulator PadR-like family FDF35_15115 PF13427 Domain of unknown function (DUF4111) FDF35_15115 PF01909 Nucleotidyltransferase domain FDF35_15120 PF02540 NAD synthase FDF35_15120 PF00958 GMP synthase C terminal domain FDF35_15120 PF00117 Glutamine amidotransferase class-I FDF35_15125 PF04286 Protein of unknown function (DUF445) FDF35_15130 PF07681 DoxX FDF35_15135 PF09335 SNARE associated Golgi protein FDF35_15150 PF13614 AAA domain FDF35_15160 PF01722 BolA-like protein FDF35_15175 PF01648 4'-phosphopantetheinyl transferase superfamily FDF35_15180 PF12697 Alpha/beta hydrolase family FDF35_15195 PF00501 AMP-binding enzyme FDF35_15195 PF00975 Thioesterase domain FDF35_15195 PF00550 Phosphopantetheine attachment site FDF35_15195 PF00668 Condensation domain FDF35_15195 PF13193 AMP-binding enzyme C-terminal domain FDF35_15200 PF16197 Ketoacyl-synthetase C-terminal extension FDF35_15200 PF02801 Beta-ketoacyl synthase, C-terminal domain FDF35_15200 PF08242 Methyltransferase domain FDF35_15200 PF00550 Phosphopantetheine attachment site FDF35_15200 PF00109 Beta-ketoacyl synthase, N-terminal domain FDF35_15200 PF14765 Polyketide synthase dehydratase FDF35_15200 PF00975 Thioesterase domain FDF35_15205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_15205 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_15205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_15210 PF00501 AMP-binding enzyme FDF35_15215 PF00196 Bacterial regulatory proteins, luxR family FDF35_15215 PF03472 Autoinducer binding domain FDF35_15225 PF00765 Autoinducer synthase FDF35_15235 PF00378 Enoyl-CoA hydratase/isomerase FDF35_15240 PF00378 Enoyl-CoA hydratase/isomerase FDF35_15245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_15245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_15245 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_15250 PF13193 AMP-binding enzyme C-terminal domain FDF35_15250 PF00501 AMP-binding enzyme FDF35_15255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDF35_15255 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDF35_15260 PF00171 Aldehyde dehydrogenase family FDF35_15270 PF00324 Amino acid permease FDF35_15275 PF00324 Amino acid permease FDF35_15280 PF01042 Endoribonuclease L-PSP FDF35_15290 PF01266 FAD dependent oxidoreductase FDF35_15295 PF01037 Lrp/AsnC ligand binding domain FDF35_15305 PF07715 TonB-dependent Receptor Plug Domain FDF35_15305 PF00593 TonB dependent receptor FDF35_15320 PF00849 RNA pseudouridylate synthase FDF35_15335 PF00440 Bacterial regulatory proteins, tetR family FDF35_15335 PF08361 MAATS-type transcriptional repressor, C-terminal region FDF35_15350 PF00106 short chain dehydrogenase FDF35_15375 PF00109 Beta-ketoacyl synthase, N-terminal domain FDF35_15375 PF02801 Beta-ketoacyl synthase, C-terminal domain FDF35_15410 PF00330 Aconitase family (aconitate hydratase) FDF35_15410 PF00694 Aconitase C-terminal domain FDF35_15415 PF00285 Citrate synthase, C-terminal domain FDF35_15425 PF07729 FCD domain FDF35_15425 PF00392 Bacterial regulatory proteins, gntR family FDF35_15435 PF00155 Aminotransferase class I and II FDF35_15440 PF09330 D-lactate dehydrogenase, membrane binding FDF35_15440 PF01565 FAD binding domain FDF35_15445 PF01070 FMN-dependent dehydrogenase FDF35_15450 PF00392 Bacterial regulatory proteins, gntR family FDF35_15450 PF07729 FCD domain FDF35_15455 PF02652 L-lactate permease FDF35_15460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDF35_15460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDF35_15460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDF35_15460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDF35_15465 PF16363 GDP-mannose 4,6 dehydratase FDF35_15475 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDF35_15475 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDF35_15475 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDF35_15480 PF00483 Nucleotidyl transferase FDF35_15485 PF02397 Bacterial sugar transferase FDF35_15490 PF00953 Glycosyl transferase family 4 FDF35_15495 PF01370 NAD dependent epimerase/dehydratase family FDF35_15500 PF13579 Glycosyl transferase 4-like domain FDF35_15505 PF02350 UDP-N-acetylglucosamine 2-epimerase FDF35_15515 PF08485 Polysaccharide biosynthesis protein C-terminal FDF35_15515 PF02719 Polysaccharide biosynthesis protein FDF35_15545 PF02348 Cytidylyltransferase FDF35_15550 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FDF35_15550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDF35_15555 PF00483 Nucleotidyl transferase FDF35_15570 PF02350 UDP-N-acetylglucosamine 2-epimerase FDF35_15575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FDF35_15580 PF02719 Polysaccharide biosynthesis protein FDF35_15585 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDF35_15585 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDF35_15585 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDF35_15590 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FDF35_15590 PF10531 SLBB domain FDF35_15590 PF02563 Polysaccharide biosynthesis/export protein FDF35_15595 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDF35_15600 PF13614 AAA domain FDF35_15600 PF13807 G-rich domain on putative tyrosine kinase FDF35_15600 PF02706 Chain length determinant protein FDF35_15605 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDF35_15605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDF35_15610 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDF35_15610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDF35_15620 PF01510 N-acetylmuramoyl-L-alanine amidase FDF35_15625 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FDF35_15625 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FDF35_15635 PF05506 Domain of unknown function (DUF756) FDF35_15635 PF04185 Phosphoesterase family FDF35_15640 PF03725 3' exoribonuclease family, domain 2 FDF35_15640 PF01138 3' exoribonuclease family, domain 1 FDF35_15650 PF00175 Oxidoreductase NAD-binding domain FDF35_15655 PF00440 Bacterial regulatory proteins, tetR family FDF35_15660 PF08360 QacR-like protein, C-terminal region FDF35_15660 PF00440 Bacterial regulatory proteins, tetR family FDF35_15665 PF01323 DSBA-like thioredoxin domain FDF35_15675 PF13419 Haloacid dehalogenase-like hydrolase FDF35_15680 PF00106 short chain dehydrogenase FDF35_15695 PF00696 Amino acid kinase family FDF35_15695 PF00583 Acetyltransferase (GNAT) family FDF35_15700 PF09084 NMT1/THI5 like FDF35_15705 PF09084 NMT1/THI5 like FDF35_15710 PF00296 Luciferase-like monooxygenase FDF35_15715 PF00528 Binding-protein-dependent transport system inner membrane component FDF35_15720 PF00005 ABC transporter FDF35_15725 PF00440 Bacterial regulatory proteins, tetR family FDF35_15725 PF08362 YcdC-like protein, C-terminal region FDF35_15730 PF01048 Phosphorylase superfamily FDF35_15740 PF06574 FAD synthetase FDF35_15740 PF01687 Riboflavin kinase FDF35_15745 PF08264 Anticodon-binding domain of tRNA FDF35_15745 PF00133 tRNA synthetases class I (I, L, M and V) FDF35_15745 PF06827 Zinc finger found in FPG and IleRS FDF35_15750 PF01252 Signal peptidase (SPase) II FDF35_15755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDF35_15795 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDF35_15800 PF07859 alpha/beta hydrolase fold FDF35_15850 PF01025 GrpE FDF35_15855 PF00012 Hsp70 protein FDF35_15875 PF13406 Transglycosylase SLT domain FDF35_15880 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FDF35_15880 PF02222 ATP-grasp domain FDF35_15885 PF00731 AIR carboxylase FDF35_15900 PF01225 Mur ligase family, catalytic domain FDF35_15900 PF02875 Mur ligase family, glutamate ligase domain FDF35_15900 PF08245 Mur ligase middle domain FDF35_15910 PF01569 PAP2 superfamily FDF35_15915 PF03741 Integral membrane protein TerC family FDF35_15925 PF03738 Glutathionylspermidine synthase preATP-grasp FDF35_15930 PF00355 Rieske [2Fe-2S] domain FDF35_15935 PF01979 Amidohydrolase family FDF35_15940 PF00156 Phosphoribosyl transferase domain FDF35_15950 PF10411 Disulfide bond isomerase protein N-terminus FDF35_15950 PF13098 Thioredoxin-like domain FDF35_15955 PF16916 Dimerisation domain of Zinc Transporter FDF35_15955 PF01545 Cation efflux family FDF35_15960 PF02583 Metal-sensitive transcriptional repressor FDF35_15965 PF10396 GTP-binding protein TrmE N-terminus FDF35_15965 PF12631 MnmE helical domain FDF35_15965 PF01926 50S ribosome-binding GTPase FDF35_15970 PF14849 YidC periplasmic domain FDF35_15970 PF02096 60Kd inner membrane protein FDF35_15975 PF01809 Putative membrane protein insertion efficiency factor FDF35_15980 PF00825 Ribonuclease P FDF35_15985 PF00468 Ribosomal protein L34 FDF35_15990 PF08299 Bacterial dnaA protein helix-turn-helix FDF35_15990 PF11638 DnaA N-terminal domain FDF35_15990 PF00308 Bacterial dnaA protein FDF35_15995 PF02768 DNA polymerase III beta subunit, C-terminal domain FDF35_15995 PF00712 DNA polymerase III beta subunit, N-terminal domain FDF35_15995 PF02767 DNA polymerase III beta subunit, central domain FDF35_16000 PF02463 RecF/RecN/SMC N terminal domain FDF35_16005 PF01751 Toprim domain FDF35_16005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_16005 PF00204 DNA gyrase B FDF35_16005 PF00986 DNA gyrase B subunit, carboxyl terminus FDF35_16005 PF18053 DNA gyrase B subunit insert domain FDF35_16015 PF09335 SNARE associated Golgi protein FDF35_16020 PF12848 ABC transporter FDF35_16020 PF00005 ABC transporter FDF35_16040 PF01521 Iron-sulphur cluster biosynthesis FDF35_16045 PF00561 alpha/beta hydrolase fold FDF35_16050 PF03702 Anhydro-N-acetylmuramic acid kinase FDF35_16055 PF00579 tRNA synthetases class I (W and Y) FDF35_16100 PF00209 Sodium:neurotransmitter symporter family FDF35_16110 PF01189 16S rRNA methyltransferase RsmB/F FDF35_16110 PF01029 NusB family FDF35_16115 PF02911 Formyl transferase, C-terminal domain FDF35_16115 PF00551 Formyl transferase FDF35_16120 PF00920 Dehydratase family FDF35_16135 PF03466 LysR substrate binding domain FDF35_16135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_16140 PF00860 Permease family FDF35_16150 PF08361 MAATS-type transcriptional repressor, C-terminal region FDF35_16150 PF00440 Bacterial regulatory proteins, tetR family FDF35_16155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDF35_16160 PF00873 AcrB/AcrD/AcrF family FDF35_16170 PF00684 DnaJ central domain FDF35_16170 PF01556 DnaJ C terminal domain FDF35_16170 PF00226 DnaJ domain FDF35_16180 PF01113 Dihydrodipicolinate reductase, N-terminus FDF35_16180 PF05173 Dihydrodipicolinate reductase, C-terminus FDF35_16190 PF07690 Major Facilitator Superfamily FDF35_16195 PF00248 Aldo/keto reductase family FDF35_16200 PF03466 LysR substrate binding domain FDF35_16200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_16215 PF00392 Bacterial regulatory proteins, gntR family FDF35_16215 PF00155 Aminotransferase class I and II FDF35_16220 PF00107 Zinc-binding dehydrogenase FDF35_16220 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_16225 PF03352 Methyladenine glycosylase FDF35_16240 PF14815 NUDIX domain FDF35_16240 PF10576 Iron-sulfur binding domain of endonuclease III FDF35_16240 PF00633 Helix-hairpin-helix motif FDF35_16240 PF00730 HhH-GPD superfamily base excision DNA repair protein FDF35_16255 PF07043 Protein of unknown function (DUF1328) FDF35_16260 PF03692 Putative zinc- or iron-chelating domain FDF35_16265 PF07995 Glucose / Sorbosone dehydrogenase FDF35_16270 PF16193 AAA C-terminal domain FDF35_16270 PF00004 ATPase family associated with various cellular activities (AAA) FDF35_16270 PF12002 MgsA AAA+ ATPase C terminal FDF35_16275 PF01226 Formate/nitrite transporter FDF35_16285 PF01259 SAICAR synthetase FDF35_16295 PF00701 Dihydrodipicolinate synthetase family FDF35_16300 PF00857 Isochorismatase family FDF35_16305 PF01758 Sodium Bile acid symporter family FDF35_16310 PF01554 MatE FDF35_16315 PF04463 Protein of unknown function (DUF523) FDF35_16320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDF35_16330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDF35_16335 PF02798 Glutathione S-transferase, N-terminal domain FDF35_16335 PF14497 Glutathione S-transferase, C-terminal domain FDF35_16345 PF00324 Amino acid permease FDF35_16355 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDF35_16355 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDF35_16370 PF05962 HutD FDF35_16375 PF17391 Urocanase N-terminal domain FDF35_16375 PF01175 Urocanase Rossmann-like domain FDF35_16375 PF17392 Urocanase C-terminal domain FDF35_16380 PF00221 Aromatic amino acid lyase FDF35_16385 PF00324 Amino acid permease FDF35_16390 PF01979 Amidohydrolase family FDF35_16395 PF00491 Arginase family FDF35_16410 PF01177 Asp/Glu/Hydantoin racemase FDF35_16415 PF01380 SIS domain FDF35_16420 PF12804 MobA-like NTP transferase domain FDF35_16420 PF14602 Hexapeptide repeat of succinyl-transferase FDF35_16420 PF00132 Bacterial transferase hexapeptide (six repeats) FDF35_16425 PF04608 Phosphatidylglycerophosphatase A FDF35_16435 PF01029 NusB family FDF35_16440 PF00885 6,7-dimethyl-8-ribityllumazine synthase FDF35_16445 PF00925 GTP cyclohydrolase II FDF35_16445 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDF35_16475 PF02580 D-Tyr-tRNA(Tyr) deacylase FDF35_16480 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FDF35_16480 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDF35_16485 PF00581 Rhodanese-like domain FDF35_16490 PF02666 Phosphatidylserine decarboxylase FDF35_16495 PF03069 Acetamidase/Formamidase family FDF35_16510 PF11808 Phosphate regulon sensor protein PhoR FDF35_16510 PF00989 PAS fold FDF35_16510 PF00512 His Kinase A (phospho-acceptor) domain FDF35_16510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_16515 PF00072 Response regulator receiver domain FDF35_16515 PF00486 Transcriptional regulatory protein, C terminal FDF35_16525 PF00106 short chain dehydrogenase FDF35_16535 PF00155 Aminotransferase class I and II FDF35_16540 PF04286 Protein of unknown function (DUF445) FDF35_16560 PF02600 Disulfide bond formation protein DsbB FDF35_16620 PF05728 Uncharacterised protein family (UPF0227) FDF35_16625 PF00204 DNA gyrase B FDF35_16625 PF00986 DNA gyrase B subunit, carboxyl terminus FDF35_16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_16625 PF01751 Toprim domain FDF35_16630 PF00106 short chain dehydrogenase FDF35_16635 PF04115 Ureidoglycolate lyase FDF35_16640 PF03561 Allantoicase repeat FDF35_16645 PF01494 FAD binding domain FDF35_16655 PF00860 Permease family FDF35_16690 PF02683 Cytochrome C biogenesis protein transmembrane region FDF35_16690 PF11412 Disulphide bond corrector protein DsbC FDF35_16695 PF07694 5TMR of 5TMR-LYT FDF35_16695 PF00990 Diguanylate cyclase, GGDEF domain FDF35_16700 PF07859 alpha/beta hydrolase fold FDF35_16710 PF03960 ArsC family FDF35_16715 PF03372 Endonuclease/Exonuclease/phosphatase family FDF35_16720 PF00156 Phosphoribosyl transferase domain FDF35_16730 PF00593 TonB dependent receptor FDF35_16730 PF07715 TonB-dependent Receptor Plug Domain FDF35_16740 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FDF35_16740 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FDF35_16745 PF04101 Glycosyltransferase family 28 C-terminal domain FDF35_16745 PF03033 Glycosyltransferase family 28 N-terminal domain FDF35_16750 PF02875 Mur ligase family, glutamate ligase domain FDF35_16750 PF08245 Mur ligase middle domain FDF35_16750 PF01225 Mur ligase family, catalytic domain FDF35_16755 PF01820 D-ala D-ala ligase N-terminus FDF35_16755 PF07478 D-ala D-ala ligase C-terminus FDF35_16760 PF03799 Cell division protein FtsQ FDF35_16760 PF08478 POTRA domain, FtsQ-type FDF35_16765 PF02491 SHS2 domain inserted in FTSA FDF35_16770 PF12327 FtsZ family, C-terminal domain FDF35_16770 PF00091 Tubulin/FtsZ family, GTPase domain FDF35_16775 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FDF35_16785 PF01551 Peptidase family M23 FDF35_16790 PF00456 Transketolase, thiamine diphosphate binding domain FDF35_16790 PF17831 Pyruvate dehydrogenase E1 component middle domain FDF35_16795 PF02817 e3 binding domain FDF35_16795 PF00364 Biotin-requiring enzyme FDF35_16795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDF35_16805 PF01169 Uncharacterized protein family UPF0016 FDF35_16810 PF00593 TonB dependent receptor FDF35_16810 PF07715 TonB-dependent Receptor Plug Domain FDF35_16815 PF01613 Flavin reductase like domain FDF35_16815 PF00258 Flavodoxin FDF35_16820 PF03692 Putative zinc- or iron-chelating domain FDF35_16825 PF00478 IMP dehydrogenase / GMP reductase domain FDF35_16825 PF00571 CBS domain FDF35_16830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDF35_16830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDF35_16830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDF35_16830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDF35_16840 PF01368 DHH family FDF35_16840 PF17768 RecJ OB domain FDF35_16840 PF02272 DHHA1 domain FDF35_16870 PF04452 RNA methyltransferase FDF35_16875 PF00924 Mechanosensitive ion channel FDF35_16885 PF13193 AMP-binding enzyme C-terminal domain FDF35_16885 PF16177 Acetyl-coenzyme A synthetase N-terminus FDF35_16885 PF00501 AMP-binding enzyme FDF35_16890 PF00857 Isochorismatase family FDF35_16895 PF01037 Lrp/AsnC ligand binding domain FDF35_16900 PF00296 Luciferase-like monooxygenase FDF35_16905 PF03358 NADPH-dependent FMN reductase FDF35_16910 PF00196 Bacterial regulatory proteins, luxR family FDF35_16910 PF00072 Response regulator receiver domain FDF35_16920 PF00072 Response regulator receiver domain FDF35_16920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_16920 PF01627 Hpt domain FDF35_16920 PF00512 His Kinase A (phospho-acceptor) domain FDF35_16920 PF00672 HAMP domain FDF35_16925 PF04341 Protein of unknown function, DUF485 FDF35_16930 PF00474 Sodium:solute symporter family FDF35_16940 PF02028 BCCT, betaine/carnitine/choline family transporter FDF35_16965 PF17755 UvrA DNA-binding domain FDF35_16965 PF00005 ABC transporter FDF35_16965 PF17760 UvrA interaction domain FDF35_16970 PF00440 Bacterial regulatory proteins, tetR family FDF35_16970 PF16925 Tetracyclin repressor-like, C-terminal domain FDF35_16975 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_16975 PF00107 Zinc-binding dehydrogenase FDF35_16985 PF06942 GlpM protein FDF35_16990 PF03070 TENA/THI-4/PQQC family FDF35_16990 PF08543 Phosphomethylpyrimidine kinase FDF35_16990 PF02581 Thiamine monophosphate synthase FDF35_17000 PF07690 Major Facilitator Superfamily FDF35_17005 PF00436 Single-strand binding protein family FDF35_17025 PF00324 Amino acid permease FDF35_17030 PF00155 Aminotransferase class I and II FDF35_17030 PF00392 Bacterial regulatory proteins, gntR family FDF35_17035 PF00202 Aminotransferase class-III FDF35_17040 PF00171 Aldehyde dehydrogenase family FDF35_17045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_17050 PF00857 Isochorismatase family FDF35_17055 PF02678 Pirin FDF35_17055 PF05726 Pirin C-terminal cupin domain FDF35_17060 PF01593 Flavin containing amine oxidoreductase FDF35_17085 PF03466 LysR substrate binding domain FDF35_17085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_17135 PF00248 Aldo/keto reductase family FDF35_17140 PF02311 AraC-like ligand binding domain FDF35_17140 PF12833 Helix-turn-helix domain FDF35_17180 PF01638 HxlR-like helix-turn-helix FDF35_17190 PF02525 Flavodoxin-like fold FDF35_17200 PF13302 Acetyltransferase (GNAT) domain FDF35_17210 PF02705 K+ potassium transporter FDF35_17235 PF00230 Major intrinsic protein FDF35_17250 PF00977 Histidine biosynthesis protein FDF35_17255 PF01636 Phosphotransferase enzyme family FDF35_17270 PF03992 Antibiotic biosynthesis monooxygenase FDF35_17290 PF00977 Histidine biosynthesis protein FDF35_17305 PF00117 Glutamine amidotransferase class-I FDF35_17310 PF00475 Imidazoleglycerol-phosphate dehydratase FDF35_17330 PF00583 Acetyltransferase (GNAT) family FDF35_17335 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FDF35_17335 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FDF35_17345 PF00512 His Kinase A (phospho-acceptor) domain FDF35_17345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_17345 PF00672 HAMP domain FDF35_17350 PF00072 Response regulator receiver domain FDF35_17350 PF00486 Transcriptional regulatory protein, C terminal FDF35_17355 PF16921 Tex protein YqgF-like domain FDF35_17355 PF00575 S1 RNA binding domain FDF35_17355 PF09371 Tex-like protein N-terminal domain FDF35_17355 PF17674 HHH domain FDF35_17360 PF01740 STAS domain FDF35_17360 PF00916 Sulfate permease family FDF35_17365 PF00106 short chain dehydrogenase FDF35_17370 PF01053 Cys/Met metabolism PLP-dependent enzyme FDF35_17375 PF00005 ABC transporter FDF35_17375 PF12848 ABC transporter FDF35_17400 PF00529 HlyD membrane-fusion protein of T1SS FDF35_17400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDF35_17405 PF00873 AcrB/AcrD/AcrF family FDF35_17410 PF01545 Cation efflux family FDF35_17440 PF00324 Amino acid permease FDF35_17455 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDF35_17470 PF01795 MraW methylase family FDF35_17480 PF03717 Penicillin-binding Protein dimerisation domain FDF35_17480 PF00905 Penicillin binding protein transpeptidase domain FDF35_17485 PF02875 Mur ligase family, glutamate ligase domain FDF35_17485 PF08245 Mur ligase middle domain FDF35_17485 PF01225 Mur ligase family, catalytic domain FDF35_17490 PF01225 Mur ligase family, catalytic domain FDF35_17490 PF02875 Mur ligase family, glutamate ligase domain FDF35_17490 PF08245 Mur ligase middle domain FDF35_17495 PF00953 Glycosyl transferase family 4 FDF35_17505 PF13847 Methyltransferase domain FDF35_17510 PF00912 Transglycosylase FDF35_17510 PF17092 Penicillin-binding protein OB-like domain FDF35_17510 PF00905 Penicillin binding protein transpeptidase domain FDF35_17535 PF03958 Bacterial type II/III secretion system short domain FDF35_17535 PF11741 AMIN domain FDF35_17535 PF00263 Bacterial type II and III secretion system protein FDF35_17535 PF07660 Secretin and TonB N terminus short domain FDF35_17540 PF01202 Shikimate kinase FDF35_17555 PF04898 Glutamate synthase central domain FDF35_17555 PF01645 Conserved region in glutamate synthase FDF35_17555 PF01493 GXGXG motif FDF35_17555 PF00310 Glutamine amidotransferases class-II FDF35_17570 PF04011 LemA family FDF35_17575 PF04536 TPM domain FDF35_17585 PF07963 Prokaryotic N-terminal methylation motif FDF35_17585 PF00114 Pilin (bacterial filament) FDF35_17595 PF15864 Protein glycosylation ligase FDF35_17595 PF04932 O-Antigen ligase FDF35_17595 PF11846 Virulence factor membrane-bound polymerase, C-terminal FDF35_17600 PF00210 Ferritin-like domain FDF35_17605 PF04324 BFD-like [2Fe-2S] binding domain FDF35_17610 PF01042 Endoribonuclease L-PSP FDF35_17615 PF13291 ACT domain FDF35_17615 PF04607 Region found in RelA / SpoT proteins FDF35_17615 PF02824 TGS domain FDF35_17625 PF01192 RNA polymerase Rpb6 FDF35_17630 PF00625 Guanylate kinase FDF35_17635 PF02401 LytB protein FDF35_17675 PF00886 Ribosomal protein S16 FDF35_17680 PF01782 RimM N-terminal domain FDF35_17680 PF05239 PRC-barrel domain FDF35_17685 PF01746 tRNA (Guanine-1)-methyltransferase FDF35_17690 PF01245 Ribosomal protein L19 FDF35_17695 PF00561 alpha/beta hydrolase fold FDF35_17700 PF03280 Proteobacterial lipase chaperone protein FDF35_17705 PF09157 Pseudouridine synthase II TruB, C-terminal FDF35_17705 PF16198 tRNA pseudouridylate synthase B C-terminal domain FDF35_17705 PF01509 TruB family pseudouridylate synthase (N terminal domain) FDF35_17710 PF01925 Sulfite exporter TauE/SafE FDF35_17720 PF00892 EamA-like transporter family FDF35_17725 PF00892 EamA-like transporter family FDF35_17730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDF35_17730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDF35_17735 PF01565 FAD binding domain FDF35_17735 PF02913 FAD linked oxidases, C-terminal domain FDF35_17745 PF03992 Antibiotic biosynthesis monooxygenase FDF35_17750 PF02525 Flavodoxin-like fold FDF35_17760 PF07690 Major Facilitator Superfamily FDF35_17765 PF12805 FUSC-like inner membrane protein yccS FDF35_17770 PF00080 Copper/zinc superoxide dismutase (SODC) FDF35_17775 PF01594 AI-2E family transporter FDF35_17780 PF13614 AAA domain FDF35_17800 PF08241 Methyltransferase domain FDF35_17810 PF00324 Amino acid permease FDF35_17815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDF35_17815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDF35_17820 PF00202 Aminotransferase class-III FDF35_17825 PF04958 Arginine N-succinyltransferase beta subunit FDF35_17830 PF00171 Aldehyde dehydrogenase family FDF35_17835 PF04996 Succinylarginine dihydrolase FDF35_17840 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FDF35_17870 PF03466 LysR substrate binding domain FDF35_17870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_17895 PF05746 DALR anticodon binding domain FDF35_17895 PF02092 Glycyl-tRNA synthetase beta subunit FDF35_17900 PF02091 Glycyl-tRNA synthetase alpha subunit FDF35_17925 PF00571 CBS domain FDF35_17930 PF04024 PspC domain FDF35_17940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_17940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_17940 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDF35_17940 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_17950 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FDF35_17950 PF08501 Shikimate dehydrogenase substrate binding domain FDF35_17950 PF01488 Shikimate / quinate 5-dehydrogenase FDF35_17955 PF01218 Coproporphyrinogen III oxidase FDF35_17960 PF00925 GTP cyclohydrolase II FDF35_17965 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FDF35_17965 PF02780 Transketolase, C-terminal domain FDF35_17965 PF02779 Transketolase, pyrimidine binding domain FDF35_17970 PF00459 Inositol monophosphatase family FDF35_17975 PF12343 Cold shock protein DEAD box A FDF35_17975 PF00270 DEAD/DEAH box helicase FDF35_17975 PF03880 DbpA RNA binding domain FDF35_17975 PF00271 Helicase conserved C-terminal domain FDF35_17985 PF00005 ABC transporter FDF35_17990 PF02405 Permease MlaE FDF35_18000 PF05494 MlaC protein FDF35_18010 PF01544 CorA-like Mg2+ transporter protein FDF35_18015 PF03641 Possible lysine decarboxylase FDF35_18020 PF00293 NUDIX domain FDF35_18025 PF00156 Phosphoribosyl transferase domain FDF35_18045 PF01553 Acyltransferase FDF35_18055 PF00375 Sodium:dicarboxylate symporter family FDF35_18065 PF01926 50S ribosome-binding GTPase FDF35_18070 PF02082 Transcriptional regulator FDF35_18075 PF00970 Oxidoreductase FAD-binding domain FDF35_18075 PF00042 Globin FDF35_18075 PF00175 Oxidoreductase NAD-binding domain FDF35_18085 PF05872 Bacterial protein of unknown function (DUF853) FDF35_18090 PF01053 Cys/Met metabolism PLP-dependent enzyme FDF35_18095 PF00117 Glutamine amidotransferase class-I FDF35_18100 PF00338 Ribosomal protein S10p/S20e FDF35_18105 PF00297 Ribosomal protein L3 FDF35_18110 PF00573 Ribosomal protein L4/L1 family FDF35_18115 PF00276 Ribosomal protein L23 FDF35_18120 PF03947 Ribosomal Proteins L2, C-terminal domain FDF35_18120 PF00181 Ribosomal Proteins L2, RNA binding domain FDF35_18125 PF00203 Ribosomal protein S19 FDF35_18130 PF00237 Ribosomal protein L22p/L17e FDF35_18135 PF07650 KH domain FDF35_18135 PF00189 Ribosomal protein S3, C-terminal domain FDF35_18140 PF00252 Ribosomal protein L16p/L10e FDF35_18145 PF00831 Ribosomal L29 protein FDF35_18150 PF00366 Ribosomal protein S17 FDF35_18155 PF00238 Ribosomal protein L14p/L23e FDF35_18160 PF00467 KOW motif FDF35_18160 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FDF35_18165 PF00281 Ribosomal protein L5 FDF35_18165 PF00673 ribosomal L5P family C-terminus FDF35_18170 PF00253 Ribosomal protein S14p/S29e FDF35_18175 PF00410 Ribosomal protein S8 FDF35_18180 PF00347 Ribosomal protein L6 FDF35_18185 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FDF35_18190 PF03719 Ribosomal protein S5, C-terminal domain FDF35_18190 PF00333 Ribosomal protein S5, N-terminal domain FDF35_18195 PF00327 Ribosomal protein L30p/L7e FDF35_18200 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FDF35_18205 PF00344 SecY translocase FDF35_18210 PF00444 Ribosomal protein L36 FDF35_18215 PF00416 Ribosomal protein S13/S18 FDF35_18220 PF00411 Ribosomal protein S11 FDF35_18225 PF00163 Ribosomal protein S4/S9 N-terminal domain FDF35_18225 PF01479 S4 domain FDF35_18230 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FDF35_18230 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FDF35_18230 PF01000 RNA polymerase Rpb3/RpoA insert domain FDF35_18235 PF01196 Ribosomal protein L17 FDF35_18245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_18245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_18245 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_18250 PF03937 Flavinator of succinate dehydrogenase FDF35_18280 PF09526 Probable metal-binding protein (DUF2387) FDF35_18285 PF01432 Peptidase family M3 FDF35_18290 PF08461 Ribonuclease R winged-helix domain FDF35_18290 PF08206 Ribonuclease B OB domain FDF35_18290 PF00773 RNB domain FDF35_18290 PF00575 S1 RNA binding domain FDF35_18290 PF17876 Cold shock domain FDF35_18340 PF12833 Helix-turn-helix domain FDF35_18350 PF03631 Virulence factor BrkB FDF35_18355 PF03358 NADPH-dependent FMN reductase FDF35_18380 PF02130 Uncharacterized protein family UPF0054 FDF35_18385 PF02562 PhoH-like protein FDF35_18390 PF00919 Uncharacterized protein family UPF0004 FDF35_18390 PF04055 Radical SAM superfamily FDF35_18390 PF01938 TRAM domain FDF35_18395 PF01464 Transglycosylase SLT domain FDF35_18395 PF10145 Phage-related minor tail protein FDF35_18395 PF01551 Peptidase family M23 FDF35_18405 PF00056 lactate/malate dehydrogenase, NAD binding domain FDF35_18405 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FDF35_18425 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FDF35_18430 PF01066 CDP-alcohol phosphatidyltransferase FDF35_18475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_18475 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_18475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_18480 PF00440 Bacterial regulatory proteins, tetR family FDF35_18480 PF17932 Tetracyclin repressor-like, C-terminal domain FDF35_18495 PF01039 Carboxyl transferase domain FDF35_18500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_18500 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_18500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_18505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDF35_18505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDF35_18505 PF00378 Enoyl-CoA hydratase/isomerase FDF35_18510 PF00364 Biotin-requiring enzyme FDF35_18510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDF35_18510 PF00289 Biotin carboxylase, N-terminal domain FDF35_18510 PF02785 Biotin carboxylase C-terminal domain FDF35_18520 PF04386 Stringent starvation protein B FDF35_18525 PF00043 Glutathione S-transferase, C-terminal domain FDF35_18525 PF13417 Glutathione S-transferase, N-terminal domain FDF35_18530 PF00380 Ribosomal protein S9/S16 FDF35_18535 PF00572 Ribosomal protein L13 FDF35_18540 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FDF35_18545 PF00398 Ribosomal RNA adenine dimethylase FDF35_18550 PF00149 Calcineurin-like phosphoesterase FDF35_18570 PF13167 GTP-binding GTPase N-terminal FDF35_18570 PF16360 GTP-binding GTPase Middle Region FDF35_18570 PF01926 50S ribosome-binding GTPase FDF35_18580 PF13091 PLD-like domain FDF35_18590 PF01389 OmpA-like transmembrane domain FDF35_18590 PF00691 OmpA family FDF35_18595 PF00990 Diguanylate cyclase, GGDEF domain FDF35_18595 PF17152 Periplasmic sensor domain FDF35_18630 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_18630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDF35_18640 PF00753 Metallo-beta-lactamase superfamily FDF35_18640 PF04273 Putative phosphatase (DUF442) FDF35_18645 PF00561 alpha/beta hydrolase fold FDF35_18650 PF00085 Thioredoxin FDF35_18655 PF03061 Thioesterase superfamily FDF35_18665 PF04461 Protein of unknown function (DUF520) FDF35_18675 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDF35_18675 PF01266 FAD dependent oxidoreductase FDF35_18690 PF04279 Intracellular septation protein A FDF35_18695 PF02811 PHP domain FDF35_18700 PF01062 Bestrophin, RFP-TM, chloride channel FDF35_18705 PF04002 RadC-like JAB domain FDF35_18710 PF04127 DNA / pantothenate metabolism flavoprotein FDF35_18710 PF02441 Flavoprotein FDF35_18715 PF07549 SecD/SecF GG Motif FDF35_18715 PF02355 Protein export membrane protein FDF35_18720 PF02355 Protein export membrane protein FDF35_18720 PF13721 SecD export protein N-terminal TM region FDF35_18720 PF07549 SecD/SecF GG Motif FDF35_18725 PF02699 Preprotein translocase subunit FDF35_18730 PF01702 Queuine tRNA-ribosyltransferase FDF35_18750 PF02547 Queuosine biosynthesis protein FDF35_18760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_18760 PF00512 His Kinase A (phospho-acceptor) domain FDF35_18760 PF07689 KaiB domain FDF35_18765 PF08335 GlnD PII-uridylyltransferase FDF35_18765 PF03710 Glutamate-ammonia ligase adenylyltransferase FDF35_18770 PF01063 Amino-transferase class IV FDF35_18785 PF01522 Polysaccharide deacetylase FDF35_18790 PF00535 Glycosyl transferase family 2 FDF35_18795 PF13439 Glycosyltransferase Family 4 FDF35_18795 PF00534 Glycosyl transferases group 1 FDF35_18810 PF02350 UDP-N-acetylglucosamine 2-epimerase FDF35_18825 PF02938 GAD domain FDF35_18825 PF01336 OB-fold nucleic acid binding domain FDF35_18825 PF00152 tRNA synthetases class II (D, K and N) FDF35_18835 PF07715 TonB-dependent Receptor Plug Domain FDF35_18835 PF00593 TonB dependent receptor FDF35_18855 PF06146 Phosphate-starvation-inducible E FDF35_18860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_18860 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_18860 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDF35_18860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_18865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDF35_18865 PF02770 Acyl-CoA dehydrogenase, middle domain FDF35_18865 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDF35_18865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDF35_18875 PF00512 His Kinase A (phospho-acceptor) domain FDF35_18875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_18875 PF00672 HAMP domain FDF35_18880 PF00486 Transcriptional regulatory protein, C terminal FDF35_18880 PF00072 Response regulator receiver domain FDF35_18885 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FDF35_18900 PF03009 Glycerophosphoryl diester phosphodiesterase family FDF35_18905 PF01923 Cobalamin adenosyltransferase FDF35_18910 PF07715 TonB-dependent Receptor Plug Domain FDF35_18910 PF00593 TonB dependent receptor FDF35_18915 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FDF35_18920 PF00291 Pyridoxal-phosphate dependent enzyme FDF35_18945 PF00290 Tryptophan synthase alpha chain FDF35_18950 PF01039 Carboxyl transferase domain FDF35_18955 PF08245 Mur ligase middle domain FDF35_18955 PF02875 Mur ligase family, glutamate ligase domain FDF35_18970 PF00753 Metallo-beta-lactamase superfamily FDF35_18975 PF00578 AhpC/TSA family FDF35_18975 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDF35_18990 PF00083 Sugar (and other) transporter FDF35_18990 PF07690 Major Facilitator Superfamily FDF35_18995 PF03006 Haemolysin-III related FDF35_19025 PF02803 Thiolase, C-terminal domain FDF35_19025 PF00108 Thiolase, N-terminal domain FDF35_19030 PF12833 Helix-turn-helix domain FDF35_19030 PF02311 AraC-like ligand binding domain FDF35_19035 PF02515 CoA-transferase family III FDF35_19040 PF04966 Carbohydrate-selective porin, OprB family FDF35_19045 PF01011 PQQ enzyme repeat FDF35_19050 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDF35_19050 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDF35_19060 PF00893 Small Multidrug Resistance protein FDF35_19070 PF00108 Thiolase, N-terminal domain FDF35_19070 PF02803 Thiolase, C-terminal domain FDF35_19080 PF13505 Outer membrane protein beta-barrel domain FDF35_19080 PF00691 OmpA family FDF35_19085 PF01139 tRNA-splicing ligase RtcB FDF35_19090 PF00324 Amino acid permease FDF35_19095 PF05175 Methyltransferase small domain FDF35_19095 PF08468 Methyltransferase small domain N-terminal FDF35_19110 PF01741 Large-conductance mechanosensitive channel, MscL FDF35_19125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FDF35_19125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FDF35_19125 PF06827 Zinc finger found in FPG and IleRS FDF35_19130 PF02245 Methylpurine-DNA glycosylase (MPG) FDF35_19135 PF07715 TonB-dependent Receptor Plug Domain FDF35_19135 PF00593 TonB dependent receptor FDF35_19140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDF35_19155 PF13098 Thioredoxin-like domain FDF35_19155 PF10411 Disulfide bond isomerase protein N-terminus FDF35_19160 PF01571 Aminomethyltransferase folate-binding domain FDF35_19170 PF04343 Protein of unknown function, DUF488 FDF35_19175 PF03831 PhnA domain FDF35_19175 PF08274 PhnA Zinc-Ribbon FDF35_19180 PF07411 Domain of unknown function (DUF1508) FDF35_19185 PF04073 Aminoacyl-tRNA editing domain FDF35_19185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDF35_19185 PF03129 Anticodon binding domain FDF35_19190 PF00873 AcrB/AcrD/AcrF family FDF35_19205 PF00072 Response regulator receiver domain FDF35_19210 PF00072 Response regulator receiver domain FDF35_19220 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FDF35_19220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDF35_19225 PF00072 Response regulator receiver domain FDF35_19225 PF01627 Hpt domain FDF35_19225 PF01584 CheW-like domain FDF35_19225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_19235 PF07687 Peptidase dimerisation domain FDF35_19235 PF01546 Peptidase family M20/M25/M40 FDF35_19240 PF08085 Entericidin EcnA/B family FDF35_19250 PF04304 Protein of unknown function (DUF454) FDF35_19255 PF03734 L,D-transpeptidase catalytic domain FDF35_19255 PF17969 L,D-transpeptidase C-terminal domain FDF35_19295 PF00175 Oxidoreductase NAD-binding domain FDF35_19295 PF00667 FAD binding domain FDF35_19295 PF00258 Flavodoxin FDF35_19305 PF12805 FUSC-like inner membrane protein yccS FDF35_19310 PF07690 Major Facilitator Superfamily FDF35_19315 PF00881 Nitroreductase family FDF35_19330 PF01235 Sodium:alanine symporter family FDF35_19335 PF01734 Patatin-like phospholipase FDF35_19340 PF13291 ACT domain FDF35_19340 PF00291 Pyridoxal-phosphate dependent enzyme FDF35_19345 PF05992 SbmA/BacA-like family FDF35_19350 PF01431 Peptidase family M13 FDF35_19350 PF05649 Peptidase family M13 FDF35_19375 PF02934 GatB/GatE catalytic domain FDF35_19375 PF02637 GatB domain FDF35_19380 PF01425 Amidase FDF35_19385 PF02686 Glu-tRNAGln amidotransferase C subunit FDF35_19395 PF04085 rod shape-determining protein MreC FDF35_19400 PF04093 rod shape-determining protein MreD FDF35_19405 PF02545 Maf-like protein FDF35_19410 PF00575 S1 RNA binding domain FDF35_19410 PF10150 Ribonuclease E/G family FDF35_19420 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FDF35_19420 PF06974 Protein of unknown function (DUF1298) FDF35_19425 PF01507 Phosphoadenosine phosphosulfate reductase family FDF35_19440 PF02525 Flavodoxin-like fold FDF35_19460 PF02673 Bacitracin resistance protein BacA FDF35_19465 PF12833 Helix-turn-helix domain FDF35_19465 PF06719 AraC-type transcriptional regulator N-terminus FDF35_19475 PF01965 DJ-1/PfpI family FDF35_19515 PF00324 Amino acid permease FDF35_19520 PF04303 PrpF protein FDF35_19525 PF04303 PrpF protein FDF35_19530 PF00348 Polyprenyl synthetase FDF35_19535 PF04237 YjbR FDF35_19540 PF01145 SPFH domain / Band 7 family FDF35_19550 PF01734 Patatin-like phospholipase FDF35_19575 PF08019 Phosphoethanolamine transferase EptA/EptB FDF35_19575 PF00884 Sulfatase FDF35_19580 PF00486 Transcriptional regulatory protein, C terminal FDF35_19580 PF00072 Response regulator receiver domain FDF35_19585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDF35_19585 PF08521 Two-component sensor kinase N-terminal FDF35_19585 PF00512 His Kinase A (phospho-acceptor) domain FDF35_19595 PF00909 Ammonium Transporter Family FDF35_19605 PF03466 LysR substrate binding domain FDF35_19605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_19620 PF13649 Methyltransferase domain FDF35_19625 PF08264 Anticodon-binding domain of tRNA FDF35_19625 PF10458 Valyl tRNA synthetase tRNA binding arm FDF35_19625 PF00133 tRNA synthetases class I (I, L, M and V) FDF35_19645 PF01906 Putative heavy-metal-binding FDF35_19650 PF01906 Putative heavy-metal-binding FDF35_19655 PF02321 Outer membrane efflux protein FDF35_19660 PF00873 AcrB/AcrD/AcrF family FDF35_19665 PF00529 HlyD membrane-fusion protein of T1SS FDF35_19665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDF35_19670 PF01569 PAP2 superfamily FDF35_19680 PF00348 Polyprenyl synthetase FDF35_19690 PF00829 Ribosomal prokaryotic L21 protein FDF35_19695 PF01016 Ribosomal L27 protein FDF35_19700 PF03548 Outer membrane lipoprotein carrier protein LolA FDF35_19710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDF35_19710 PF02403 Seryl-tRNA synthetase N-terminal domain FDF35_19715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDF35_19715 PF10414 Sirohaem synthase dimerisation region FDF35_19715 PF14824 Sirohaem biosynthesis protein central FDF35_19720 PF00588 SpoU rRNA Methylase family FDF35_19730 PF03358 NADPH-dependent FMN reductase FDF35_19735 PF13520 Amino acid permease FDF35_19740 PF00465 Iron-containing alcohol dehydrogenase FDF35_19750 PF03099 Biotin/lipoate A/B protein ligase family FDF35_19755 PF04359 Protein of unknown function (DUF493) FDF35_19790 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDF35_19795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDF35_19820 PF16078 2-oxoglutarate dehydrogenase N-terminus FDF35_19820 PF00676 Dehydrogenase E1 component FDF35_19820 PF16870 2-oxoglutarate dehydrogenase C-terminal FDF35_19820 PF02779 Transketolase, pyrimidine binding domain FDF35_19825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDF35_19825 PF00364 Biotin-requiring enzyme FDF35_19825 PF02817 e3 binding domain FDF35_19830 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_19830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDF35_19835 PF08442 ATP-grasp domain FDF35_19835 PF00549 CoA-ligase FDF35_19840 PF00549 CoA-ligase FDF35_19840 PF02629 CoA binding domain FDF35_19845 PF00579 tRNA synthetases class I (W and Y) FDF35_19850 PF05661 Protein of unknown function (DUF808) FDF35_19855 PF04228 Putative neutral zinc metallopeptidase FDF35_19860 PF00999 Sodium/hydrogen exchanger family FDF35_19940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDF35_19945 PF00582 Universal stress protein family FDF35_20050 PF04225 Opacity-associated protein A LysM-like domain FDF35_20050 PF01551 Peptidase family M23 FDF35_20090 PF00717 Peptidase S24-like FDF35_20095 PF00817 impB/mucB/samB family FDF35_20095 PF11799 impB/mucB/samB family C-terminal domain FDF35_20095 PF11798 IMS family HHH motif FDF35_20095 PF13438 Domain of unknown function (DUF4113) FDF35_20100 PF17762 HTH domain found in ParB protein FDF35_20100 PF02195 ParB-like nuclease domain FDF35_20105 PF13614 AAA domain FDF35_20155 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDF35_20155 PF00437 Type II/IV secretion system protein FDF35_20305 PF13610 DDE domain FDF35_20315 PF01695 IstB-like ATP binding protein FDF35_20320 PF00239 Resolvase, N terminal domain FDF35_20320 PF02796 Helix-turn-helix domain of resolvase FDF35_20325 PF12833 Helix-turn-helix domain FDF35_20325 PF02311 AraC-like ligand binding domain FDF35_20330 PF00111 2Fe-2S iron-sulfur cluster binding domain FDF35_20340 PF14759 Reductase C-terminal FDF35_20340 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_20365 PF17932 Tetracyclin repressor-like, C-terminal domain FDF35_20365 PF00440 Bacterial regulatory proteins, tetR family FDF35_20390 PF01526 Tn3 transposase DDE domain FDF35_20390 PF13700 Domain of unknown function (DUF4158) FDF35_20395 PF00239 Resolvase, N terminal domain FDF35_20395 PF02796 Helix-turn-helix domain of resolvase FDF35_20405 PF13635 Domain of unknown function (DUF4143) FDF35_20405 PF13173 AAA domain FDF35_20465 PF02796 Helix-turn-helix domain of resolvase FDF35_20465 PF00239 Resolvase, N terminal domain FDF35_20470 PF13610 DDE domain FDF35_20475 PF00376 MerR family regulatory protein FDF35_20475 PF09278 MerR, DNA binding FDF35_20480 PF02411 MerT mercuric transport protein FDF35_20485 PF00403 Heavy-metal-associated domain FDF35_20490 PF03203 MerC mercury resistance protein FDF35_20495 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDF35_20495 PF00403 Heavy-metal-associated domain FDF35_20495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDF35_20500 PF13411 MerR HTH family regulatory protein FDF35_20510 PF11809 Domain of unknown function (DUF3330) FDF35_20510 PF00563 EAL domain FDF35_20545 PF00860 Permease family FDF35_20550 PF13737 Transposase DDE domain FDF35_20555 PF04115 Ureidoglycolate lyase FDF35_20560 PF03561 Allantoicase repeat FDF35_20565 PF01494 FAD binding domain FDF35_20570 PF03466 LysR substrate binding domain FDF35_20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_20580 PF00860 Permease family FDF35_20585 PF03502 Nucleoside-specific channel-forming protein, Tsx FDF35_20600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDF35_20600 PF03466 LysR substrate binding domain FDF35_20640 PF14226 non-haem dioxygenase in morphine synthesis N-terminal FDF35_20640 PF03171 2OG-Fe(II) oxygenase superfamily FDF35_20655 PF00355 Rieske [2Fe-2S] domain FDF35_20675 PF02583 Metal-sensitive transcriptional repressor FDF35_20680 PF08240 Alcohol dehydrogenase GroES-like domain FDF35_20680 PF00107 Zinc-binding dehydrogenase FDF35_20690 PF13610 DDE domain FDF35_20705 PF01131 DNA topoisomerase FDF35_20705 PF01751 Toprim domain FDF35_20705 PF01396 Topoisomerase DNA binding C4 zinc finger FDF35_20725 PF01636 Phosphotransferase enzyme family FDF35_20730 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase FDF35_20750 PF00303 Thymidylate synthase FDF35_20780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDF35_20780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDF35_20780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDF35_20780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDF35_20785 PF00809 Pterin binding enzyme FDF35_20800 PF13614 AAA domain FDF35_20805 PF08535 KorB domain FDF35_20805 PF06613 KorB C-terminal beta-barrel domain FDF35_20805 PF02195 ParB-like nuclease domain FDF35_20865 PF13610 DDE domain FDF35_20870 PF13495 Phage integrase, N-terminal SAM-like domain FDF35_20870 PF00589 Phage integrase family FDF35_20880 PF07690 Major Facilitator Superfamily FDF35_20890 PF00893 Small Multidrug Resistance protein FDF35_20895 PF00809 Pterin binding enzyme FDF35_20950 PF07091 Ribosomal RNA methyltransferase (FmrO) FDF35_20975 PF01636 Phosphotransferase enzyme family FDF35_20990 PF13610 DDE domain FDF35_21000 PF02796 Helix-turn-helix domain of resolvase FDF35_21000 PF00239 Resolvase, N terminal domain FDF35_21030 PF02909 Tetracyclin repressor-like, C-terminal domain FDF35_21030 PF00440 Bacterial regulatory proteins, tetR family FDF35_21035 PF07690 Major Facilitator Superfamily FDF35_21045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDF35_21045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDF35_21045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDF35_21045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDF35_21050 PF00809 Pterin binding enzyme FDF35_21070 PF00665 Integrase core domain FDF35_21095 PF02899 Phage integrase, N-terminal SAM-like domain FDF35_21095 PF00589 Phage integrase family FDF35_21135 PF01435 Peptidase family M48 FDF35_21345 PF07715 TonB-dependent Receptor Plug Domain FDF35_21345 PF00593 TonB dependent receptor FDF35_21365 PF02796 Helix-turn-helix domain of resolvase FDF35_21365 PF00239 Resolvase, N terminal domain FDF35_21370 PF01126 Heme oxygenase FDF35_21375 PF00593 TonB dependent receptor FDF35_21375 PF07715 TonB-dependent Receptor Plug Domain FDF35_21380 PF04304 Protein of unknown function (DUF454) FDF35_21400 PF01051 Initiator Replication protein