locus-tag class description FDN01_00010 PF00118 TCP-1/cpn60 chaperonin family FDN01_00015 PF00166 Chaperonin 10 Kd subunit FDN01_00020 PF03091 CutA1 divalent ion tolerance protein FDN01_00025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDN01_00030 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FDN01_00040 PF00753 Metallo-beta-lactamase superfamily FDN01_00045 PF13936 Helix-turn-helix domain FDN01_00045 PF00665 Integrase core domain FDN01_00065 PF05728 Uncharacterised protein family (UPF0227) FDN01_00070 PF00204 DNA gyrase B FDN01_00070 PF00986 DNA gyrase B subunit, carboxyl terminus FDN01_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_00070 PF01751 Toprim domain FDN01_00075 PF00106 short chain dehydrogenase FDN01_00080 PF04115 Ureidoglycolate lyase FDN01_00085 PF03561 Allantoicase repeat FDN01_00090 PF01494 FAD binding domain FDN01_00100 PF00860 Permease family FDN01_00105 PF00576 HIUase/Transthyretin family FDN01_00135 PF02683 Cytochrome C biogenesis protein transmembrane region FDN01_00135 PF11412 Disulphide bond corrector protein DsbC FDN01_00140 PF00990 Diguanylate cyclase, GGDEF domain FDN01_00140 PF07694 5TMR of 5TMR-LYT FDN01_00145 PF07859 alpha/beta hydrolase fold FDN01_00155 PF03960 ArsC family FDN01_00160 PF03372 Endonuclease/Exonuclease/phosphatase family FDN01_00165 PF00156 Phosphoribosyl transferase domain FDN01_00170 PF00593 TonB dependent receptor FDN01_00170 PF07715 TonB-dependent Receptor Plug Domain FDN01_00180 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FDN01_00180 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FDN01_00185 PF04101 Glycosyltransferase family 28 C-terminal domain FDN01_00185 PF03033 Glycosyltransferase family 28 N-terminal domain FDN01_00190 PF01225 Mur ligase family, catalytic domain FDN01_00190 PF02875 Mur ligase family, glutamate ligase domain FDN01_00190 PF08245 Mur ligase middle domain FDN01_00195 PF07478 D-ala D-ala ligase C-terminus FDN01_00195 PF01820 D-ala D-ala ligase N-terminus FDN01_00200 PF03799 Cell division protein FtsQ FDN01_00200 PF08478 POTRA domain, FtsQ-type FDN01_00205 PF02491 SHS2 domain inserted in FTSA FDN01_00210 PF12327 FtsZ family, C-terminal domain FDN01_00210 PF00091 Tubulin/FtsZ family, GTPase domain FDN01_00215 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FDN01_00225 PF01551 Peptidase family M23 FDN01_00230 PF00456 Transketolase, thiamine diphosphate binding domain FDN01_00230 PF17831 Pyruvate dehydrogenase E1 component middle domain FDN01_00235 PF02817 e3 binding domain FDN01_00235 PF00364 Biotin-requiring enzyme FDN01_00235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDN01_00245 PF01169 Uncharacterized protein family UPF0016 FDN01_00250 PF00593 TonB dependent receptor FDN01_00250 PF07715 TonB-dependent Receptor Plug Domain FDN01_00255 PF01613 Flavin reductase like domain FDN01_00255 PF00258 Flavodoxin FDN01_00260 PF03692 Putative zinc- or iron-chelating domain FDN01_00265 PF00571 CBS domain FDN01_00265 PF00478 IMP dehydrogenase / GMP reductase domain FDN01_00270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDN01_00270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDN01_00270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDN01_00270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDN01_00275 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FDN01_00275 PF01243 Pyridoxamine 5'-phosphate oxidase FDN01_00280 PF17768 RecJ OB domain FDN01_00280 PF01368 DHH family FDN01_00280 PF02272 DHHA1 domain FDN01_00300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN01_00305 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FDN01_00310 PF04452 RNA methyltransferase FDN01_00315 PF00924 Mechanosensitive ion channel FDN01_00325 PF13193 AMP-binding enzyme C-terminal domain FDN01_00325 PF16177 Acetyl-coenzyme A synthetase N-terminus FDN01_00325 PF00501 AMP-binding enzyme FDN01_00330 PF00857 Isochorismatase family FDN01_00335 PF01037 Lrp/AsnC ligand binding domain FDN01_00340 PF00296 Luciferase-like monooxygenase FDN01_00345 PF03358 NADPH-dependent FMN reductase FDN01_00350 PF00196 Bacterial regulatory proteins, luxR family FDN01_00350 PF00072 Response regulator receiver domain FDN01_00360 PF00672 HAMP domain FDN01_00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_00360 PF00512 His Kinase A (phospho-acceptor) domain FDN01_00360 PF01627 Hpt domain FDN01_00360 PF00072 Response regulator receiver domain FDN01_00365 PF04341 Protein of unknown function, DUF485 FDN01_00370 PF00474 Sodium:solute symporter family FDN01_00380 PF02028 BCCT, betaine/carnitine/choline family transporter FDN01_00390 PF00990 Diguanylate cyclase, GGDEF domain FDN01_00390 PF17158 Membrane-associated sensor, integral membrane domain FDN01_00400 PF00905 Penicillin binding protein transpeptidase domain FDN01_00435 PF00005 ABC transporter FDN01_00435 PF17760 UvrA interaction domain FDN01_00435 PF17755 UvrA DNA-binding domain FDN01_00440 PF00440 Bacterial regulatory proteins, tetR family FDN01_00440 PF16925 Tetracyclin repressor-like, C-terminal domain FDN01_00445 PF00107 Zinc-binding dehydrogenase FDN01_00445 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_00455 PF06942 GlpM protein FDN01_00460 PF02581 Thiamine monophosphate synthase FDN01_00460 PF03070 TENA/THI-4/PQQC family FDN01_00460 PF08543 Phosphomethylpyrimidine kinase FDN01_00470 PF07690 Major Facilitator Superfamily FDN01_00475 PF00436 Single-strand binding protein family FDN01_00485 PF03591 AzlC protein FDN01_00495 PF00324 Amino acid permease FDN01_00500 PF00155 Aminotransferase class I and II FDN01_00500 PF00392 Bacterial regulatory proteins, gntR family FDN01_00505 PF00202 Aminotransferase class-III FDN01_00510 PF00171 Aldehyde dehydrogenase family FDN01_00515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_00520 PF00857 Isochorismatase family FDN01_00525 PF02678 Pirin FDN01_00525 PF05726 Pirin C-terminal cupin domain FDN01_00530 PF01593 Flavin containing amine oxidoreductase FDN01_00550 PF07690 Major Facilitator Superfamily FDN01_00555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_00555 PF03466 LysR substrate binding domain FDN01_00575 PF00248 Aldo/keto reductase family FDN01_00580 PF12833 Helix-turn-helix domain FDN01_00580 PF02311 AraC-like ligand binding domain FDN01_00615 PF01638 HxlR-like helix-turn-helix FDN01_00625 PF02525 Flavodoxin-like fold FDN01_00655 PF02705 K+ potassium transporter FDN01_00680 PF00230 Major intrinsic protein FDN01_00695 PF00977 Histidine biosynthesis protein FDN01_00700 PF01636 Phosphotransferase enzyme family FDN01_00715 PF03992 Antibiotic biosynthesis monooxygenase FDN01_00730 PF00977 Histidine biosynthesis protein FDN01_00745 PF00117 Glutamine amidotransferase class-I FDN01_00750 PF00475 Imidazoleglycerol-phosphate dehydratase FDN01_00765 PF00583 Acetyltransferase (GNAT) family FDN01_00770 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FDN01_00770 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FDN01_00780 PF00672 HAMP domain FDN01_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_00780 PF00512 His Kinase A (phospho-acceptor) domain FDN01_00785 PF00486 Transcriptional regulatory protein, C terminal FDN01_00785 PF00072 Response regulator receiver domain FDN01_00790 PF17674 HHH domain FDN01_00790 PF09371 Tex-like protein N-terminal domain FDN01_00790 PF16921 Tex protein YqgF-like domain FDN01_00790 PF00575 S1 RNA binding domain FDN01_00795 PF00916 Sulfate permease family FDN01_00795 PF01740 STAS domain FDN01_00800 PF00106 short chain dehydrogenase FDN01_00805 PF01053 Cys/Met metabolism PLP-dependent enzyme FDN01_00810 PF12848 ABC transporter FDN01_00810 PF00005 ABC transporter FDN01_00835 PF04191 Phospholipid methyltransferase FDN01_00855 PF00529 HlyD membrane-fusion protein of T1SS FDN01_00855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN01_00860 PF00873 AcrB/AcrD/AcrF family FDN01_00865 PF01545 Cation efflux family FDN01_00895 PF00324 Amino acid permease FDN01_00910 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDN01_00925 PF01795 MraW methylase family FDN01_00935 PF03717 Penicillin-binding Protein dimerisation domain FDN01_00935 PF00905 Penicillin binding protein transpeptidase domain FDN01_00940 PF01225 Mur ligase family, catalytic domain FDN01_00940 PF08245 Mur ligase middle domain FDN01_00940 PF02875 Mur ligase family, glutamate ligase domain FDN01_00945 PF02875 Mur ligase family, glutamate ligase domain FDN01_00945 PF08245 Mur ligase middle domain FDN01_00945 PF01225 Mur ligase family, catalytic domain FDN01_00950 PF00953 Glycosyl transferase family 4 FDN01_00960 PF13847 Methyltransferase domain FDN01_00965 PF00905 Penicillin binding protein transpeptidase domain FDN01_00965 PF17092 Penicillin-binding protein OB-like domain FDN01_00965 PF00912 Transglycosylase FDN01_00990 PF03958 Bacterial type II/III secretion system short domain FDN01_00990 PF00263 Bacterial type II and III secretion system protein FDN01_00990 PF07660 Secretin and TonB N terminus short domain FDN01_00990 PF11741 AMIN domain FDN01_00995 PF01202 Shikimate kinase FDN01_01000 PF01761 3-dehydroquinate synthase FDN01_01010 PF04898 Glutamate synthase central domain FDN01_01010 PF00310 Glutamine amidotransferases class-II FDN01_01010 PF01645 Conserved region in glutamate synthase FDN01_01010 PF01493 GXGXG motif FDN01_01015 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_01015 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FDN01_01025 PF04011 LemA family FDN01_01030 PF04536 TPM domain FDN01_01040 PF00114 Pilin (bacterial filament) FDN01_01040 PF07963 Prokaryotic N-terminal methylation motif FDN01_01050 PF04932 O-Antigen ligase FDN01_01050 PF11846 Virulence factor membrane-bound polymerase, C-terminal FDN01_01050 PF15864 Protein glycosylation ligase FDN01_01060 PF00210 Ferritin-like domain FDN01_01065 PF04324 BFD-like [2Fe-2S] binding domain FDN01_01070 PF01042 Endoribonuclease L-PSP FDN01_01075 PF02824 TGS domain FDN01_01075 PF04607 Region found in RelA / SpoT proteins FDN01_01075 PF13291 ACT domain FDN01_01085 PF01192 RNA polymerase Rpb6 FDN01_01090 PF00625 Guanylate kinase FDN01_01095 PF02401 LytB protein FDN01_01135 PF00886 Ribosomal protein S16 FDN01_01140 PF01782 RimM N-terminal domain FDN01_01140 PF05239 PRC-barrel domain FDN01_01145 PF01746 tRNA (Guanine-1)-methyltransferase FDN01_01150 PF01245 Ribosomal protein L19 FDN01_01155 PF00561 alpha/beta hydrolase fold FDN01_01160 PF03280 Proteobacterial lipase chaperone protein FDN01_01165 PF09157 Pseudouridine synthase II TruB, C-terminal FDN01_01165 PF16198 tRNA pseudouridylate synthase B C-terminal domain FDN01_01165 PF01509 TruB family pseudouridylate synthase (N terminal domain) FDN01_01170 PF01925 Sulfite exporter TauE/SafE FDN01_01180 PF00892 EamA-like transporter family FDN01_01185 PF00892 EamA-like transporter family FDN01_01190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDN01_01190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDN01_01195 PF01565 FAD binding domain FDN01_01195 PF02913 FAD linked oxidases, C-terminal domain FDN01_01205 PF03992 Antibiotic biosynthesis monooxygenase FDN01_01210 PF02525 Flavodoxin-like fold FDN01_01220 PF07690 Major Facilitator Superfamily FDN01_01225 PF12805 FUSC-like inner membrane protein yccS FDN01_01230 PF00080 Copper/zinc superoxide dismutase (SODC) FDN01_01235 PF01594 AI-2E family transporter FDN01_01240 PF13614 AAA domain FDN01_01270 PF00324 Amino acid permease FDN01_01275 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDN01_01275 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDN01_01280 PF00202 Aminotransferase class-III FDN01_01285 PF04958 Arginine N-succinyltransferase beta subunit FDN01_01290 PF00171 Aldehyde dehydrogenase family FDN01_01295 PF04996 Succinylarginine dihydrolase FDN01_01300 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FDN01_01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_01335 PF03466 LysR substrate binding domain FDN01_01340 PF00892 EamA-like transporter family FDN01_01350 PF02092 Glycyl-tRNA synthetase beta subunit FDN01_01350 PF05746 DALR anticodon binding domain FDN01_01355 PF02091 Glycyl-tRNA synthetase alpha subunit FDN01_01380 PF00571 CBS domain FDN01_01385 PF04024 PspC domain FDN01_01395 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_01395 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDN01_01395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_01395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_01410 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FDN01_01410 PF08501 Shikimate dehydrogenase substrate binding domain FDN01_01410 PF01488 Shikimate / quinate 5-dehydrogenase FDN01_01415 PF01218 Coproporphyrinogen III oxidase FDN01_01420 PF00925 GTP cyclohydrolase II FDN01_01425 PF02780 Transketolase, C-terminal domain FDN01_01425 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FDN01_01425 PF02779 Transketolase, pyrimidine binding domain FDN01_01430 PF00459 Inositol monophosphatase family FDN01_01435 PF03880 DbpA RNA binding domain FDN01_01435 PF00270 DEAD/DEAH box helicase FDN01_01435 PF12343 Cold shock protein DEAD box A FDN01_01435 PF00271 Helicase conserved C-terminal domain FDN01_01445 PF00005 ABC transporter FDN01_01450 PF02405 Permease MlaE FDN01_01460 PF05494 MlaC protein FDN01_01470 PF01544 CorA-like Mg2+ transporter protein FDN01_01475 PF03641 Possible lysine decarboxylase FDN01_01480 PF00293 NUDIX domain FDN01_01485 PF00156 Phosphoribosyl transferase domain FDN01_01490 PF00270 DEAD/DEAH box helicase FDN01_01490 PF17191 RecG wedge domain FDN01_01490 PF00271 Helicase conserved C-terminal domain FDN01_01505 PF01553 Acyltransferase FDN01_01515 PF00375 Sodium:dicarboxylate symporter family FDN01_01525 PF01926 50S ribosome-binding GTPase FDN01_01530 PF02082 Transcriptional regulator FDN01_01535 PF00175 Oxidoreductase NAD-binding domain FDN01_01535 PF00970 Oxidoreductase FAD-binding domain FDN01_01535 PF00042 Globin FDN01_01540 PF05872 Bacterial protein of unknown function (DUF853) FDN01_01545 PF01053 Cys/Met metabolism PLP-dependent enzyme FDN01_01550 PF00117 Glutamine amidotransferase class-I FDN01_01555 PF00338 Ribosomal protein S10p/S20e FDN01_01560 PF00297 Ribosomal protein L3 FDN01_01565 PF00573 Ribosomal protein L4/L1 family FDN01_01570 PF00276 Ribosomal protein L23 FDN01_01575 PF00181 Ribosomal Proteins L2, RNA binding domain FDN01_01575 PF03947 Ribosomal Proteins L2, C-terminal domain FDN01_01580 PF00203 Ribosomal protein S19 FDN01_01585 PF00237 Ribosomal protein L22p/L17e FDN01_01590 PF07650 KH domain FDN01_01590 PF00189 Ribosomal protein S3, C-terminal domain FDN01_01595 PF00252 Ribosomal protein L16p/L10e FDN01_01600 PF00831 Ribosomal L29 protein FDN01_01605 PF00366 Ribosomal protein S17 FDN01_01610 PF00238 Ribosomal protein L14p/L23e FDN01_01615 PF00467 KOW motif FDN01_01615 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FDN01_01620 PF00281 Ribosomal protein L5 FDN01_01620 PF00673 ribosomal L5P family C-terminus FDN01_01625 PF00253 Ribosomal protein S14p/S29e FDN01_01630 PF00410 Ribosomal protein S8 FDN01_01635 PF00347 Ribosomal protein L6 FDN01_01640 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FDN01_01645 PF00333 Ribosomal protein S5, N-terminal domain FDN01_01645 PF03719 Ribosomal protein S5, C-terminal domain FDN01_01650 PF00327 Ribosomal protein L30p/L7e FDN01_01655 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FDN01_01660 PF00344 SecY translocase FDN01_01665 PF00444 Ribosomal protein L36 FDN01_01670 PF00416 Ribosomal protein S13/S18 FDN01_01675 PF00411 Ribosomal protein S11 FDN01_01680 PF00163 Ribosomal protein S4/S9 N-terminal domain FDN01_01680 PF01479 S4 domain FDN01_01685 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FDN01_01685 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FDN01_01685 PF01000 RNA polymerase Rpb3/RpoA insert domain FDN01_01690 PF01196 Ribosomal protein L17 FDN01_01695 PF00743 Flavin-binding monooxygenase-like FDN01_01700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_01700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_01700 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_01705 PF03937 Flavinator of succinate dehydrogenase FDN01_01735 PF09526 Probable metal-binding protein (DUF2387) FDN01_01740 PF01432 Peptidase family M3 FDN01_01745 PF08461 Ribonuclease R winged-helix domain FDN01_01745 PF00575 S1 RNA binding domain FDN01_01745 PF08206 Ribonuclease B OB domain FDN01_01745 PF00773 RNB domain FDN01_01745 PF17876 Cold shock domain FDN01_01785 PF01557 Fumarylacetoacetate (FAA) hydrolase family FDN01_01790 PF12833 Helix-turn-helix domain FDN01_01795 PF00892 EamA-like transporter family FDN01_01800 PF03631 Virulence factor BrkB FDN01_01805 PF03358 NADPH-dependent FMN reductase FDN01_01830 PF02130 Uncharacterized protein family UPF0054 FDN01_01835 PF02562 PhoH-like protein FDN01_01840 PF00919 Uncharacterized protein family UPF0004 FDN01_01840 PF01938 TRAM domain FDN01_01840 PF04055 Radical SAM superfamily FDN01_01845 PF01551 Peptidase family M23 FDN01_01845 PF10145 Phage-related minor tail protein FDN01_01845 PF01464 Transglycosylase SLT domain FDN01_01855 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FDN01_01855 PF00056 lactate/malate dehydrogenase, NAD binding domain FDN01_01875 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FDN01_01880 PF01066 CDP-alcohol phosphatidyltransferase FDN01_01925 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_01925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_01925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_01930 PF17932 Tetracyclin repressor-like, C-terminal domain FDN01_01930 PF00440 Bacterial regulatory proteins, tetR family FDN01_01945 PF01039 Carboxyl transferase domain FDN01_01950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_01950 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_01950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_01960 PF02785 Biotin carboxylase C-terminal domain FDN01_01960 PF00289 Biotin carboxylase, N-terminal domain FDN01_01960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN01_01960 PF00364 Biotin-requiring enzyme FDN01_01970 PF04386 Stringent starvation protein B FDN01_01975 PF13417 Glutathione S-transferase, N-terminal domain FDN01_01975 PF00043 Glutathione S-transferase, C-terminal domain FDN01_01980 PF00380 Ribosomal protein S9/S16 FDN01_01985 PF00572 Ribosomal protein L13 FDN01_01990 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FDN01_01995 PF00398 Ribosomal RNA adenine dimethylase FDN01_02000 PF00149 Calcineurin-like phosphoesterase FDN01_02020 PF01926 50S ribosome-binding GTPase FDN01_02020 PF16360 GTP-binding GTPase Middle Region FDN01_02020 PF13167 GTP-binding GTPase N-terminal FDN01_02030 PF13091 PLD-like domain FDN01_02035 PF00149 Calcineurin-like phosphoesterase FDN01_02035 PF10518 TAT (twin-arginine translocation) pathway signal sequence FDN01_02040 PF01389 OmpA-like transmembrane domain FDN01_02040 PF00691 OmpA family FDN01_02045 PF00990 Diguanylate cyclase, GGDEF domain FDN01_02045 PF17152 Periplasmic sensor domain FDN01_02080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDN01_02080 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_02090 PF00753 Metallo-beta-lactamase superfamily FDN01_02090 PF04273 Putative phosphatase (DUF442) FDN01_02095 PF00561 alpha/beta hydrolase fold FDN01_02100 PF00085 Thioredoxin FDN01_02105 PF03061 Thioesterase superfamily FDN01_02115 PF04461 Protein of unknown function (DUF520) FDN01_02125 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDN01_02125 PF01266 FAD dependent oxidoreductase FDN01_02135 PF03795 YCII-related domain FDN01_02140 PF04279 Intracellular septation protein A FDN01_02145 PF02811 PHP domain FDN01_02150 PF01062 Bestrophin, RFP-TM, chloride channel FDN01_02155 PF04002 RadC-like JAB domain FDN01_02160 PF04127 DNA / pantothenate metabolism flavoprotein FDN01_02160 PF02441 Flavoprotein FDN01_02165 PF02355 Protein export membrane protein FDN01_02165 PF07549 SecD/SecF GG Motif FDN01_02170 PF13721 SecD export protein N-terminal TM region FDN01_02170 PF07549 SecD/SecF GG Motif FDN01_02170 PF02355 Protein export membrane protein FDN01_02175 PF02699 Preprotein translocase subunit FDN01_02180 PF01702 Queuine tRNA-ribosyltransferase FDN01_02195 PF02547 Queuosine biosynthesis protein FDN01_02205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_02205 PF00512 His Kinase A (phospho-acceptor) domain FDN01_02205 PF07689 KaiB domain FDN01_02210 PF08335 GlnD PII-uridylyltransferase FDN01_02210 PF03710 Glutamate-ammonia ligase adenylyltransferase FDN01_02215 PF01063 Amino-transferase class IV FDN01_02230 PF01522 Polysaccharide deacetylase FDN01_02235 PF00535 Glycosyl transferase family 2 FDN01_02240 PF13439 Glycosyltransferase Family 4 FDN01_02240 PF00534 Glycosyl transferases group 1 FDN01_02265 PF11380 Stealth protein CR2, conserved region 2 FDN01_02265 PF17101 Stealth protein CR1, conserved region 1 FDN01_02265 PF17102 Stealth protein CR3, conserved region 3 FDN01_02270 PF02938 GAD domain FDN01_02270 PF00152 tRNA synthetases class II (D, K and N) FDN01_02270 PF01336 OB-fold nucleic acid binding domain FDN01_02280 PF07715 TonB-dependent Receptor Plug Domain FDN01_02280 PF00593 TonB dependent receptor FDN01_02300 PF06146 Phosphate-starvation-inducible E FDN01_02305 PF02798 Glutathione S-transferase, N-terminal domain FDN01_02305 PF00043 Glutathione S-transferase, C-terminal domain FDN01_02310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_02310 PF03466 LysR substrate binding domain FDN01_02315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_02315 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_02315 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDN01_02315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_02320 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_02320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_02320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_02320 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDN01_02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_02330 PF00512 His Kinase A (phospho-acceptor) domain FDN01_02330 PF00672 HAMP domain FDN01_02335 PF00486 Transcriptional regulatory protein, C terminal FDN01_02335 PF00072 Response regulator receiver domain FDN01_02340 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FDN01_02360 PF01923 Cobalamin adenosyltransferase FDN01_02365 PF00593 TonB dependent receptor FDN01_02365 PF07715 TonB-dependent Receptor Plug Domain FDN01_02370 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FDN01_02375 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_02400 PF00290 Tryptophan synthase alpha chain FDN01_02405 PF01039 Carboxyl transferase domain FDN01_02410 PF08245 Mur ligase middle domain FDN01_02410 PF02875 Mur ligase family, glutamate ligase domain FDN01_02425 PF00753 Metallo-beta-lactamase superfamily FDN01_02430 PF00578 AhpC/TSA family FDN01_02430 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDN01_02435 PF07516 SecA Wing and Scaffold domain FDN01_02435 PF02810 SEC-C motif FDN01_02435 PF07517 SecA DEAD-like domain FDN01_02435 PF01043 SecA preprotein cross-linking domain FDN01_02445 PF00083 Sugar (and other) transporter FDN01_02445 PF07690 Major Facilitator Superfamily FDN01_02450 PF03006 Haemolysin-III related FDN01_02475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN01_02475 PF00378 Enoyl-CoA hydratase/isomerase FDN01_02475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN01_02480 PF00108 Thiolase, N-terminal domain FDN01_02480 PF02803 Thiolase, C-terminal domain FDN01_02485 PF12833 Helix-turn-helix domain FDN01_02485 PF02311 AraC-like ligand binding domain FDN01_02490 PF02515 CoA-transferase family III FDN01_02495 PF04966 Carbohydrate-selective porin, OprB family FDN01_02500 PF01011 PQQ enzyme repeat FDN01_02505 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDN01_02505 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDN01_02515 PF00893 Small Multidrug Resistance protein FDN01_02525 PF00108 Thiolase, N-terminal domain FDN01_02525 PF02803 Thiolase, C-terminal domain FDN01_02535 PF00691 OmpA family FDN01_02535 PF13505 Outer membrane protein beta-barrel domain FDN01_02545 PF01139 tRNA-splicing ligase RtcB FDN01_02550 PF00324 Amino acid permease FDN01_02555 PF08468 Methyltransferase small domain N-terminal FDN01_02555 PF05175 Methyltransferase small domain FDN01_02560 PF00860 Permease family FDN01_02570 PF01741 Large-conductance mechanosensitive channel, MscL FDN01_02585 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FDN01_02585 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FDN01_02585 PF06827 Zinc finger found in FPG and IleRS FDN01_02590 PF02245 Methylpurine-DNA glycosylase (MPG) FDN01_02595 PF07715 TonB-dependent Receptor Plug Domain FDN01_02595 PF00593 TonB dependent receptor FDN01_02610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN01_02625 PF13098 Thioredoxin-like domain FDN01_02625 PF10411 Disulfide bond isomerase protein N-terminus FDN01_02630 PF01571 Aminomethyltransferase folate-binding domain FDN01_02640 PF04343 Protein of unknown function, DUF488 FDN01_02645 PF03831 PhnA domain FDN01_02645 PF08274 PhnA Zinc-Ribbon FDN01_02650 PF07411 Domain of unknown function (DUF1508) FDN01_02655 PF04073 Aminoacyl-tRNA editing domain FDN01_02655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDN01_02655 PF03129 Anticodon binding domain FDN01_02660 PF00873 AcrB/AcrD/AcrF family FDN01_02675 PF00072 Response regulator receiver domain FDN01_02680 PF00072 Response regulator receiver domain FDN01_02685 PF01584 CheW-like domain FDN01_02690 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FDN01_02690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDN01_02695 PF00072 Response regulator receiver domain FDN01_02695 PF01627 Hpt domain FDN01_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_02695 PF01584 CheW-like domain FDN01_02705 PF01546 Peptidase family M20/M25/M40 FDN01_02705 PF07687 Peptidase dimerisation domain FDN01_02710 PF08085 Entericidin EcnA/B family FDN01_02720 PF04304 Protein of unknown function (DUF454) FDN01_02725 PF17969 L,D-transpeptidase C-terminal domain FDN01_02725 PF03734 L,D-transpeptidase catalytic domain FDN01_02740 PF00175 Oxidoreductase NAD-binding domain FDN01_02740 PF00258 Flavodoxin FDN01_02740 PF00667 FAD binding domain FDN01_02750 PF12805 FUSC-like inner membrane protein yccS FDN01_02755 PF07690 Major Facilitator Superfamily FDN01_02775 PF01235 Sodium:alanine symporter family FDN01_02780 PF01734 Patatin-like phospholipase FDN01_02785 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_02785 PF13291 ACT domain FDN01_02790 PF05992 SbmA/BacA-like family FDN01_02820 PF02637 GatB domain FDN01_02820 PF02934 GatB/GatE catalytic domain FDN01_02825 PF01425 Amidase FDN01_02830 PF02686 Glu-tRNAGln amidotransferase C subunit FDN01_02840 PF04085 rod shape-determining protein MreC FDN01_02845 PF04093 rod shape-determining protein MreD FDN01_02850 PF02545 Maf-like protein FDN01_02855 PF10150 Ribonuclease E/G family FDN01_02855 PF00575 S1 RNA binding domain FDN01_02870 PF01507 Phosphoadenosine phosphosulfate reductase family FDN01_02885 PF02525 Flavodoxin-like fold FDN01_02905 PF02673 Bacitracin resistance protein BacA FDN01_02910 PF12833 Helix-turn-helix domain FDN01_02910 PF06719 AraC-type transcriptional regulator N-terminus FDN01_02915 PF16197 Ketoacyl-synthetase C-terminal extension FDN01_02915 PF00550 Phosphopantetheine attachment site FDN01_02915 PF14765 Polyketide synthase dehydratase FDN01_02915 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_02915 PF08990 Erythronolide synthase docking FDN01_02915 PF09277 Erythronolide synthase, docking FDN01_02915 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN01_02915 PF00698 Acyl transferase domain FDN01_02915 PF08659 KR domain FDN01_02915 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN01_02920 PF01965 DJ-1/PfpI family FDN01_02930 PF00324 Amino acid permease FDN01_02935 PF04303 PrpF protein FDN01_02940 PF00348 Polyprenyl synthetase FDN01_02945 PF04237 YjbR FDN01_02950 PF01145 SPFH domain / Band 7 family FDN01_02960 PF01734 Patatin-like phospholipase FDN01_02985 PF00486 Transcriptional regulatory protein, C terminal FDN01_02985 PF00072 Response regulator receiver domain FDN01_02990 PF08521 Two-component sensor kinase N-terminal FDN01_02990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_02990 PF00512 His Kinase A (phospho-acceptor) domain FDN01_03000 PF00909 Ammonium Transporter Family FDN01_03010 PF03466 LysR substrate binding domain FDN01_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_03030 PF00133 tRNA synthetases class I (I, L, M and V) FDN01_03030 PF08264 Anticodon-binding domain of tRNA FDN01_03030 PF10458 Valyl tRNA synthetase tRNA binding arm FDN01_03050 PF01906 Putative heavy-metal-binding FDN01_03055 PF01906 Putative heavy-metal-binding FDN01_03060 PF02321 Outer membrane efflux protein FDN01_03065 PF00873 AcrB/AcrD/AcrF family FDN01_03070 PF00529 HlyD membrane-fusion protein of T1SS FDN01_03070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN01_03075 PF01569 PAP2 superfamily FDN01_03085 PF00348 Polyprenyl synthetase FDN01_03095 PF00829 Ribosomal prokaryotic L21 protein FDN01_03100 PF01016 Ribosomal L27 protein FDN01_03105 PF03548 Outer membrane lipoprotein carrier protein LolA FDN01_03115 PF02403 Seryl-tRNA synthetase N-terminal domain FDN01_03115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDN01_03120 PF10414 Sirohaem synthase dimerisation region FDN01_03120 PF14824 Sirohaem biosynthesis protein central FDN01_03120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDN01_03125 PF00588 SpoU rRNA Methylase family FDN01_03135 PF03358 NADPH-dependent FMN reductase FDN01_03140 PF13520 Amino acid permease FDN01_03145 PF00465 Iron-containing alcohol dehydrogenase FDN01_03155 PF03099 Biotin/lipoate A/B protein ligase family FDN01_03160 PF04359 Protein of unknown function (DUF493) FDN01_03165 PF04546 Sigma-70, non-essential region FDN01_03165 PF04539 Sigma-70 region 3 FDN01_03165 PF04542 Sigma-70 region 2 FDN01_03165 PF00140 Sigma-70 factor, region 1.2 FDN01_03165 PF04545 Sigma-70, region 4 FDN01_03165 PF03979 Sigma-70 factor, region 1.1 FDN01_03200 PF00285 Citrate synthase, C-terminal domain FDN01_03205 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDN01_03210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDN01_03215 PF00890 FAD binding domain FDN01_03215 PF02910 Fumarate reductase flavoprotein C-term FDN01_03220 PF13085 2Fe-2S iron-sulfur cluster binding domain FDN01_03235 PF16870 2-oxoglutarate dehydrogenase C-terminal FDN01_03235 PF16078 2-oxoglutarate dehydrogenase N-terminus FDN01_03235 PF00676 Dehydrogenase E1 component FDN01_03235 PF02779 Transketolase, pyrimidine binding domain FDN01_03240 PF00364 Biotin-requiring enzyme FDN01_03240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDN01_03240 PF02817 e3 binding domain FDN01_03245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDN01_03245 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_03250 PF00549 CoA-ligase FDN01_03250 PF08442 ATP-grasp domain FDN01_03255 PF02629 CoA binding domain FDN01_03255 PF00549 CoA-ligase FDN01_03260 PF00579 tRNA synthetases class I (W and Y) FDN01_03265 PF05661 Protein of unknown function (DUF808) FDN01_03270 PF04228 Putative neutral zinc metallopeptidase FDN01_03330 PF09587 Bacterial capsule synthesis protein PGA_cap FDN01_03340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDN01_03345 PF00582 Universal stress protein family FDN01_03350 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_03355 PF01272 Transcription elongation factor, GreA/GreB, C-term FDN01_03355 PF03449 Transcription elongation factor, N-terminal FDN01_03360 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FDN01_03360 PF02142 MGS-like domain FDN01_03360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN01_03365 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FDN01_03365 PF00117 Glutamine amidotransferase class-I FDN01_03380 PF01985 CRS1 / YhbY (CRM) domain FDN01_03385 PF01728 FtsJ-like methyltransferase FDN01_03390 PF00004 ATPase family associated with various cellular activities (AAA) FDN01_03390 PF17862 AAA+ lid domain FDN01_03390 PF06480 FtsH Extracellular FDN01_03390 PF01434 Peptidase family M41 FDN01_03395 PF00809 Pterin binding enzyme FDN01_03415 PF09423 PhoD-like phosphatase FDN01_03415 PF16655 PhoD-like phosphatase, N-terminal domain FDN01_03430 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FDN01_03430 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FDN01_03445 PF00083 Sugar (and other) transporter FDN01_03450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDN01_03450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FDN01_03455 PF01266 FAD dependent oxidoreductase FDN01_03455 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FDN01_03460 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FDN01_03460 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FDN01_03465 PF00781 Diacylglycerol kinase catalytic domain FDN01_03470 PF00149 Calcineurin-like phosphoesterase FDN01_03480 PF00166 Chaperonin 10 Kd subunit FDN01_03485 PF00118 TCP-1/cpn60 chaperonin family FDN01_03490 PF01219 Prokaryotic diacylglycerol kinase FDN01_03500 PF03009 Glycerophosphoryl diester phosphodiesterase family FDN01_03505 PF00873 AcrB/AcrD/AcrF family FDN01_03515 PF01435 Peptidase family M48 FDN01_03520 PF01464 Transglycosylase SLT domain FDN01_03525 PF01171 PP-loop family FDN01_03535 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN01_03535 PF01464 Transglycosylase SLT domain FDN01_03540 PF01272 Transcription elongation factor, GreA/GreB, C-term FDN01_03540 PF03449 Transcription elongation factor, N-terminal FDN01_03555 PF00668 Condensation domain FDN01_03555 PF13193 AMP-binding enzyme C-terminal domain FDN01_03555 PF00550 Phosphopantetheine attachment site FDN01_03555 PF00501 AMP-binding enzyme FDN01_03555 PF00975 Thioesterase domain FDN01_03585 PF00881 Nitroreductase family FDN01_03600 PF02595 Glycerate kinase family FDN01_03605 PF00384 Molybdopterin oxidoreductase FDN01_03610 PF02634 FdhD/NarQ family FDN01_03615 PF06803 Protein of unknown function (DUF1232) FDN01_03620 PF11890 Domain of unknown function (DUF3410) FDN01_03620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDN01_03620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDN01_03625 PF00152 tRNA synthetases class II (D, K and N) FDN01_03635 PF18073 Rubredoxin metal binding domain FDN01_03640 PF00324 Amino acid permease FDN01_03650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FDN01_03650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FDN01_03655 PF01678 Diaminopimelate epimerase FDN01_03660 PF01810 LysE type translocator FDN01_03665 PF02899 Phage integrase, N-terminal SAM-like domain FDN01_03665 PF00589 Phage integrase family FDN01_03670 PF01012 Electron transfer flavoprotein domain FDN01_03675 PF01012 Electron transfer flavoprotein domain FDN01_03675 PF00766 Electron transfer flavoprotein FAD-binding domain FDN01_03680 PF03989 DNA gyrase C-terminal domain, beta-propeller FDN01_03680 PF00521 DNA gyrase/topoisomerase IV, subunit A FDN01_03695 PF00535 Glycosyl transferase family 2 FDN01_03715 PF13533 Biotin-lipoyl like FDN01_03725 PF00266 Aminotransferase class-V FDN01_03735 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FDN01_03745 PF02687 FtsX-like permease family FDN01_03745 PF12704 MacB-like periplasmic core domain FDN01_03750 PF00005 ABC transporter FDN01_03765 PF01343 Peptidase family S49 FDN01_03765 PF06965 Na+/H+ antiporter 1 FDN01_03770 PF12697 Alpha/beta hydrolase family FDN01_03775 PF00551 Formyl transferase FDN01_03780 PF00586 AIR synthase related protein, N-terminal domain FDN01_03780 PF02769 AIR synthase related protein, C-terminal domain FDN01_03785 PF01594 AI-2E family transporter FDN01_03790 PF08299 Bacterial dnaA protein helix-turn-helix FDN01_03790 PF00308 Bacterial dnaA protein FDN01_03790 PF11638 DnaA N-terminal domain FDN01_03820 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDN01_03820 PF00588 SpoU rRNA Methylase family FDN01_03825 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FDN01_03835 PF00691 OmpA family FDN01_03840 PF07676 WD40-like Beta Propeller Repeat FDN01_03840 PF04052 TolB amino-terminal domain FDN01_03850 PF02472 Biopolymer transport protein ExbD/TolR FDN01_03855 PF01618 MotA/TolQ/ExbB proton channel family FDN01_03860 PF03061 Thioesterase superfamily FDN01_03870 PF05496 Holliday junction DNA helicase RuvB P-loop domain FDN01_03870 PF05491 RuvB C-terminal winged helix domain FDN01_03870 PF17864 RuvB AAA lid domain FDN01_03875 PF01330 RuvA N terminal domain FDN01_03875 PF07499 RuvA, C-terminal domain FDN01_03880 PF01966 HD domain FDN01_03885 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FDN01_03885 PF02769 AIR synthase related protein, C-terminal domain FDN01_03885 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FDN01_03890 PF07690 Major Facilitator Superfamily FDN01_03895 PF01784 NIF3 (NGG1p interacting factor 3) FDN01_03900 PF00378 Enoyl-CoA hydratase/isomerase FDN01_03905 PF01467 Cytidylyltransferase-like FDN01_03905 PF00293 NUDIX domain FDN01_03915 PF00578 AhpC/TSA family FDN01_03930 PF06508 Queuosine biosynthesis protein QueC FDN01_03940 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FDN01_03940 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_03940 PF14602 Hexapeptide repeat of succinyl-transferase FDN01_03950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_03950 PF03466 LysR substrate binding domain FDN01_03955 PF00005 ABC transporter FDN01_03955 PF12857 TOBE-like domain FDN01_03960 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_03965 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_03980 PF01063 Amino-transferase class IV FDN01_03985 PF02618 YceG-like family FDN01_03990 PF02223 Thymidylate kinase FDN01_04000 PF00890 FAD binding domain FDN01_04000 PF02910 Fumarate reductase flavoprotein C-term FDN01_04005 PF13180 PDZ domain FDN01_04015 PF00679 Elongation factor G C-terminus FDN01_04015 PF03144 Elongation factor Tu domain 2 FDN01_04015 PF00009 Elongation factor Tu GTP binding domain FDN01_04015 PF06421 GTP-binding protein LepA C-terminus FDN01_04020 PF10502 Signal peptidase, peptidase S26 FDN01_04030 PF14622 Ribonuclease-III-like FDN01_04030 PF00035 Double-stranded RNA binding motif FDN01_04035 PF07650 KH domain FDN01_04035 PF01926 50S ribosome-binding GTPase FDN01_04045 PF11967 Recombination protein O N terminal FDN01_04045 PF02565 Recombination protein O C terminal FDN01_04050 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FDN01_04055 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FDN01_04060 PF00106 short chain dehydrogenase FDN01_04110 PF17757 UvrB interaction domain FDN01_04110 PF02151 UvrB/uvrC motif FDN01_04110 PF00271 Helicase conserved C-terminal domain FDN01_04110 PF12344 Ultra-violet resistance protein B FDN01_04110 PF04851 Type III restriction enzyme, res subunit FDN01_04120 PF00892 EamA-like transporter family FDN01_04125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDN01_04125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDN01_04140 PF01018 GTP1/OBG FDN01_04140 PF01926 50S ribosome-binding GTPase FDN01_04145 PF01472 PUA domain FDN01_04145 PF00696 Amino acid kinase family FDN01_04155 PF07759 Protein of unknown function (DUF1615) FDN01_04180 PF02350 UDP-N-acetylglucosamine 2-epimerase FDN01_04210 PF00875 DNA photolyase FDN01_04210 PF03441 FAD binding domain of DNA photolyase FDN01_04215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN01_04220 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_04225 PF00768 D-alanyl-D-alanine carboxypeptidase FDN01_04225 PF07943 Penicillin-binding protein 5, C-terminal domain FDN01_04235 PF03971 Monomeric isocitrate dehydrogenase FDN01_04240 PF00849 RNA pseudouridylate synthase FDN01_04245 PF00180 Isocitrate/isopropylmalate dehydrogenase FDN01_04265 PF06779 Uncharacterised MFS-type transporter YbfB FDN01_04270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_04270 PF03466 LysR substrate binding domain FDN01_04280 PF02567 Phenazine biosynthesis-like protein FDN01_04285 PF05193 Peptidase M16 inactive domain FDN01_04285 PF00675 Insulinase (Peptidase family M16) FDN01_04310 PF02581 Thiamine monophosphate synthase FDN01_04315 PF00202 Aminotransferase class-III FDN01_04325 PF00849 RNA pseudouridylate synthase FDN01_04330 PF00271 Helicase conserved C-terminal domain FDN01_04330 PF12137 RNA polymerase recycling family C-terminal FDN01_04330 PF00176 SNF2 family N-terminal domain FDN01_04330 PF18339 RapA N-terminal Tudor like domain 1 FDN01_04330 PF18337 RapA N-terminal Tudor like domain FDN01_04340 PF00440 Bacterial regulatory proteins, tetR family FDN01_04345 PF00175 Oxidoreductase NAD-binding domain FDN01_04345 PF00970 Oxidoreductase FAD-binding domain FDN01_04345 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN01_04350 PF00487 Fatty acid desaturase FDN01_04360 PF00440 Bacterial regulatory proteins, tetR family FDN01_04360 PF17754 MftR C-terminal domain FDN01_04370 PF00202 Aminotransferase class-III FDN01_04375 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDN01_04380 PF00171 Aldehyde dehydrogenase family FDN01_04385 PF01037 Lrp/AsnC ligand binding domain FDN01_04395 PF00324 Amino acid permease FDN01_04400 PF12849 PBP superfamily domain FDN01_04405 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_04410 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_04415 PF00005 ABC transporter FDN01_04420 PF08496 Peptidase family S49 N-terminal FDN01_04420 PF01343 Peptidase family S49 FDN01_04435 PF00206 Lyase FDN01_04435 PF08328 Adenylosuccinate lyase C-terminal FDN01_04440 PF04356 Protein of unknown function (DUF489) FDN01_04450 PF13344 Haloacid dehalogenase-like hydrolase FDN01_04450 PF00293 NUDIX domain FDN01_04455 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_04460 PF00768 D-alanyl-D-alanine carboxypeptidase FDN01_04460 PF07943 Penicillin-binding protein 5, C-terminal domain FDN01_04475 PF01975 Survival protein SurE FDN01_04480 PF01476 LysM domain FDN01_04480 PF01551 Peptidase family M23 FDN01_04485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_04485 PF03466 LysR substrate binding domain FDN01_04490 PF13654 AAA domain FDN01_04490 PF05362 Lon protease (S16) C-terminal proteolytic domain FDN01_04495 PF07690 Major Facilitator Superfamily FDN01_04500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDN01_04505 PF13593 SBF-like CPA transporter family (DUF4137) FDN01_04510 PF01197 Ribosomal protein L31 FDN01_04525 PF04055 Radical SAM superfamily FDN01_04530 PF09285 Elongation factor P, C-terminal FDN01_04530 PF08207 Elongation factor P (EF-P) KOW-like domain FDN01_04530 PF01132 Elongation factor P (EF-P) OB domain FDN01_04535 PF13722 5TM C-terminal transporter carbon starvation CstA FDN01_04535 PF02554 Carbon starvation protein CstA FDN01_04540 PF04328 Selenoprotein, putative FDN01_04575 PF06018 CodY GAF-like domain FDN01_04575 PF17853 GGDEF-like domain FDN01_04575 PF13556 PucR C-terminal helix-turn-helix domain FDN01_04590 PF00171 Aldehyde dehydrogenase family FDN01_04595 PF00324 Amino acid permease FDN01_04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_04600 PF03466 LysR substrate binding domain FDN01_04605 PF02028 BCCT, betaine/carnitine/choline family transporter FDN01_04610 PF02028 BCCT, betaine/carnitine/choline family transporter FDN01_04615 PF00355 Rieske [2Fe-2S] domain FDN01_04615 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN01_04625 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_04625 PF18113 Rubredoxin binding C-terminal domain FDN01_04630 PF01266 FAD dependent oxidoreductase FDN01_04630 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDN01_04650 PF00892 EamA-like transporter family FDN01_04660 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FDN01_04665 PF00083 Sugar (and other) transporter FDN01_04670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDN01_04670 PF13378 Enolase C-terminal domain-like FDN01_04675 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN01_04675 PF00698 Acyl transferase domain FDN01_04675 PF16197 Ketoacyl-synthetase C-terminal extension FDN01_04675 PF09277 Erythronolide synthase, docking FDN01_04675 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_04675 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN01_04675 PF08659 KR domain FDN01_04675 PF08990 Erythronolide synthase docking FDN01_04675 PF00550 Phosphopantetheine attachment site FDN01_04675 PF14765 Polyketide synthase dehydratase FDN01_04680 PF00440 Bacterial regulatory proteins, tetR family FDN01_04700 PF17954 Quercetinase C-terminal cupin domain FDN01_04700 PF02678 Pirin FDN01_04710 PF08348 YheO-like PAS domain FDN01_04710 PF13309 HTH domain FDN01_04720 PF13193 AMP-binding enzyme C-terminal domain FDN01_04720 PF00501 AMP-binding enzyme FDN01_04720 PF00668 Condensation domain FDN01_04720 PF00550 Phosphopantetheine attachment site FDN01_04725 PF00550 Phosphopantetheine attachment site FDN01_04725 PF00501 AMP-binding enzyme FDN01_04725 PF13193 AMP-binding enzyme C-terminal domain FDN01_04725 PF00668 Condensation domain FDN01_04725 PF00975 Thioesterase domain FDN01_04730 PF01032 FecCD transport family FDN01_04735 PF01032 FecCD transport family FDN01_04740 PF00005 ABC transporter FDN01_04745 PF01497 Periplasmic binding protein FDN01_04750 PF00593 TonB dependent receptor FDN01_04750 PF07715 TonB-dependent Receptor Plug Domain FDN01_04755 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FDN01_04760 PF00501 AMP-binding enzyme FDN01_04760 PF00550 Phosphopantetheine attachment site FDN01_04760 PF00668 Condensation domain FDN01_04765 PF00501 AMP-binding enzyme FDN01_04765 PF13193 AMP-binding enzyme C-terminal domain FDN01_04770 PF00550 Phosphopantetheine attachment site FDN01_04770 PF00857 Isochorismatase family FDN01_04775 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDN01_04785 PF00005 ABC transporter FDN01_04785 PF00664 ABC transporter transmembrane region FDN01_04790 PF00005 ABC transporter FDN01_04790 PF00664 ABC transporter transmembrane region FDN01_04795 PF00975 Thioesterase domain FDN01_04805 PF00425 chorismate binding enzyme FDN01_04815 PF01208 Uroporphyrinogen decarboxylase (URO-D) FDN01_04820 PF05675 Protein of unknown function (DUF817) FDN01_04835 PF00144 Beta-lactamase FDN01_04850 PF01799 [2Fe-2S] binding domain FDN01_04850 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN01_04855 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FDN01_04855 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FDN01_04870 PF00218 Indole-3-glycerol phosphate synthase FDN01_04875 PF02885 Glycosyl transferase family, helical bundle domain FDN01_04875 PF00591 Glycosyl transferase family, a/b domain FDN01_04880 PF00593 TonB dependent receptor FDN01_04880 PF07715 TonB-dependent Receptor Plug Domain FDN01_04890 PF00117 Glutamine amidotransferase class-I FDN01_04935 PF12161 HsdM N-terminal domain FDN01_04935 PF02384 N-6 DNA Methylase FDN01_04965 PF01555 DNA methylase FDN01_05135 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system FDN01_05165 PF01476 LysM domain FDN01_05165 PF01551 Peptidase family M23 FDN01_05165 PF08525 Opacity-associated protein A N-terminal motif FDN01_05215 PF13356 Arm DNA-binding domain FDN01_05215 PF00589 Phage integrase family FDN01_05225 PF00854 POT family FDN01_05235 PF04345 Chorismate lyase FDN01_05240 PF01040 UbiA prenyltransferase family FDN01_05270 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FDN01_05270 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FDN01_05275 PF01784 NIF3 (NGG1p interacting factor 3) FDN01_05280 PF13180 PDZ domain FDN01_05285 PF01743 Poly A polymerase head domain FDN01_05285 PF12627 Probable RNA and SrmB- binding site of polymerase A FDN01_05290 PF00390 Malic enzyme, N-terminal domain FDN01_05290 PF01515 Phosphate acetyl/butaryl transferase FDN01_05290 PF03949 Malic enzyme, NAD binding domain FDN01_05295 PF00563 EAL domain FDN01_05295 PF00990 Diguanylate cyclase, GGDEF domain FDN01_05295 PF03707 Bacterial signalling protein N terminal repeat FDN01_05300 PF04452 RNA methyltransferase FDN01_05305 PF02219 Methylenetetrahydrofolate reductase FDN01_05310 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FDN01_05310 PF05221 S-adenosyl-L-homocysteine hydrolase FDN01_05325 PF09317 Domain of unknown function (DUF1974) FDN01_05325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_05325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_05330 PF04055 Radical SAM superfamily FDN01_05335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDN01_05335 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_05345 PF07690 Major Facilitator Superfamily FDN01_05355 PF00557 Metallopeptidase family M24 FDN01_05360 PF00318 Ribosomal protein S2 FDN01_05365 PF00889 Elongation factor TS FDN01_05375 PF12833 Helix-turn-helix domain FDN01_05385 PF00665 Integrase core domain FDN01_05385 PF13936 Helix-turn-helix domain FDN01_05400 PF05036 Sporulation related domain FDN01_05400 PF03330 Lytic transglycolase FDN01_05405 PF13406 Transglycosylase SLT domain FDN01_05410 PF01098 Cell cycle protein FDN01_05420 PF14489 QueF-like protein FDN01_05420 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FDN01_05425 PF01061 ABC-2 type transporter FDN01_05430 PF00005 ABC transporter FDN01_05460 PF00464 Serine hydroxymethyltransferase FDN01_05465 PF02321 Outer membrane efflux protein FDN01_05470 PF00873 AcrB/AcrD/AcrF family FDN01_05475 PF13533 Biotin-lipoyl like FDN01_05480 PF03466 LysR substrate binding domain FDN01_05480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_05485 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN01_05490 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_05495 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_05500 PF00005 ABC transporter FDN01_05505 PF00893 Small Multidrug Resistance protein FDN01_05510 PF00037 4Fe-4S binding domain FDN01_05520 PF00155 Aminotransferase class I and II FDN01_05520 PF00392 Bacterial regulatory proteins, gntR family FDN01_05525 PF02567 Phenazine biosynthesis-like protein FDN01_05530 PF00175 Oxidoreductase NAD-binding domain FDN01_05530 PF00970 Oxidoreductase FAD-binding domain FDN01_05535 PF01980 tRNA-methyltransferase O FDN01_05535 PF18389 TrmO C-terminal domain FDN01_05545 PF00437 Type II/IV secretion system protein FDN01_05555 PF00072 Response regulator receiver domain FDN01_05555 PF00486 Transcriptional regulatory protein, C terminal FDN01_05560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_05560 PF08521 Two-component sensor kinase N-terminal FDN01_05560 PF00512 His Kinase A (phospho-acceptor) domain FDN01_05570 PF00293 NUDIX domain FDN01_05580 PF00905 Penicillin binding protein transpeptidase domain FDN01_05580 PF14814 Bifunctional transglycosylase second domain FDN01_05580 PF00912 Transglycosylase FDN01_05585 PF01513 ATP-NAD kinase FDN01_05590 PF07023 Protein of unknown function (DUF1315) FDN01_05595 PF00591 Glycosyl transferase family, a/b domain FDN01_05595 PF02885 Glycosyl transferase family, helical bundle domain FDN01_05605 PF00375 Sodium:dicarboxylate symporter family FDN01_05610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_05610 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_05610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_05615 PF00756 Putative esterase FDN01_05620 PF01842 ACT domain FDN01_05620 PF01817 Chorismate mutase type II FDN01_05620 PF00800 Prephenate dehydratase FDN01_05625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDN01_05635 PF01546 Peptidase family M20/M25/M40 FDN01_05635 PF07687 Peptidase dimerisation domain FDN01_05640 PF12706 Beta-lactamase superfamily domain FDN01_05650 PF03883 Peroxide stress protein YaaA FDN01_05660 PF05690 Thiazole biosynthesis protein ThiG FDN01_05670 PF04241 Protein of unknown function (DUF423) FDN01_05675 PF00140 Sigma-70 factor, region 1.2 FDN01_05675 PF04542 Sigma-70 region 2 FDN01_05675 PF04545 Sigma-70, region 4 FDN01_05685 PF00313 'Cold-shock' DNA-binding domain FDN01_05690 PF00271 Helicase conserved C-terminal domain FDN01_05690 PF00270 DEAD/DEAH box helicase FDN01_05700 PF00881 Nitroreductase family FDN01_05705 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FDN01_05705 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FDN01_05725 PF01180 Dihydroorotate dehydrogenase FDN01_05730 PF02674 Colicin V production protein FDN01_05750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDN01_05750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDN01_05755 PF01435 Peptidase family M48 FDN01_05760 PF09424 Yqey-like protein FDN01_05765 PF01165 Ribosomal protein S21 FDN01_05770 PF00814 Glycoprotease family FDN01_05790 PF00069 Protein kinase domain FDN01_05815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_05815 PF03466 LysR substrate binding domain FDN01_05820 PF00202 Aminotransferase class-III FDN01_05825 PF00171 Aldehyde dehydrogenase family FDN01_05830 PF00324 Amino acid permease FDN01_05860 PF04076 Bacterial OB fold (BOF) protein FDN01_05885 PF00561 alpha/beta hydrolase fold FDN01_05890 PF03616 Sodium/glutamate symporter FDN01_05900 PF00392 Bacterial regulatory proteins, gntR family FDN01_05900 PF07729 FCD domain FDN01_05950 PF08946 Osmosensory transporter coiled coil FDN01_05950 PF00083 Sugar (and other) transporter FDN01_05975 PF00155 Aminotransferase class I and II FDN01_05980 PF02080 TrkA-C domain FDN01_05980 PF06826 Predicted Permease Membrane Region FDN01_05990 PF04403 Paraquat-inducible protein A FDN01_05995 PF02470 MlaD protein FDN01_06005 PF01177 Asp/Glu/Hydantoin racemase FDN01_06010 PF00892 EamA-like transporter family FDN01_06025 PF13610 DDE domain FDN01_06085 PF00324 Amino acid permease FDN01_06090 PF01266 FAD dependent oxidoreductase FDN01_06095 PF00324 Amino acid permease FDN01_06105 PF00392 Bacterial regulatory proteins, gntR family FDN01_06105 PF07729 FCD domain FDN01_06115 PF00171 Aldehyde dehydrogenase family FDN01_06125 PF00202 Aminotransferase class-III FDN01_06130 PF04958 Arginine N-succinyltransferase beta subunit FDN01_06135 PF00324 Amino acid permease FDN01_06140 PF13610 DDE domain FDN01_06155 PF00860 Permease family FDN01_06165 PF01292 Prokaryotic cytochrome b561 FDN01_06175 PF01351 Ribonuclease HII FDN01_06180 PF02599 Global regulator protein family FDN01_06185 PF00696 Amino acid kinase family FDN01_06185 PF01842 ACT domain FDN01_06185 PF13840 ACT domain FDN01_06195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDN01_06195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDN01_06200 PF13393 Histidyl-tRNA synthetase FDN01_06205 PF00709 Adenylosuccinate synthetase FDN01_06220 PF00248 Aldo/keto reductase family FDN01_06230 PF13545 Crp-like helix-turn-helix domain FDN01_06230 PF00027 Cyclic nucleotide-binding domain FDN01_06235 PF02566 OsmC-like protein FDN01_06250 PF17871 AAA lid domain FDN01_06250 PF07724 AAA domain (Cdc48 subfamily) FDN01_06250 PF02861 Clp amino terminal domain, pathogenicity island component FDN01_06250 PF00004 ATPase family associated with various cellular activities (AAA) FDN01_06250 PF10431 C-terminal, D2-small domain, of ClpB protein FDN01_06265 PF02926 THUMP domain FDN01_06265 PF10672 S-adenosylmethionine-dependent methyltransferase FDN01_06265 PF01170 Putative RNA methylase family UPF0020 FDN01_06275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDN01_06275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDN01_06280 PF01979 Amidohydrolase family FDN01_06285 PF00691 OmpA family FDN01_06285 PF13488 Glycine zipper FDN01_06295 PF00043 Glutathione S-transferase, C-terminal domain FDN01_06295 PF13417 Glutathione S-transferase, N-terminal domain FDN01_06300 PF02390 Putative methyltransferase FDN01_06310 PF02798 Glutathione S-transferase, N-terminal domain FDN01_06310 PF00043 Glutathione S-transferase, C-terminal domain FDN01_06320 PF13192 Thioredoxin domain FDN01_06320 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_06345 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDN01_06345 PF00578 AhpC/TSA family FDN01_06350 PF04408 Helicase associated domain (HA2) FDN01_06350 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FDN01_06350 PF00271 Helicase conserved C-terminal domain FDN01_06350 PF11898 Domain of unknown function (DUF3418) FDN01_06350 PF00270 DEAD/DEAH box helicase FDN01_06355 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FDN01_06355 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FDN01_06365 PF07690 Major Facilitator Superfamily FDN01_06370 PF03594 Benzoate membrane transport protein FDN01_06375 PF00106 short chain dehydrogenase FDN01_06380 PF00970 Oxidoreductase FAD-binding domain FDN01_06380 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN01_06380 PF00175 Oxidoreductase NAD-binding domain FDN01_06385 PF00866 Ring hydroxylating beta subunit FDN01_06390 PF00355 Rieske [2Fe-2S] domain FDN01_06390 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN01_06395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_06395 PF03466 LysR substrate binding domain FDN01_06405 PF00403 Heavy-metal-associated domain FDN01_06410 PF09278 MerR, DNA binding FDN01_06410 PF00376 MerR family regulatory protein FDN01_06450 PF02601 Exonuclease VII, large subunit FDN01_06450 PF13742 OB-fold nucleic acid binding domain FDN01_06485 PF01810 LysE type translocator FDN01_06490 PF00313 'Cold-shock' DNA-binding domain FDN01_06500 PF03807 NADP oxidoreductase coenzyme F420-dependent FDN01_06500 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDN01_06530 PF07690 Major Facilitator Superfamily FDN01_06535 PF01638 HxlR-like helix-turn-helix FDN01_06565 PF01406 tRNA synthetases class I (C) catalytic domain FDN01_06565 PF09190 DALR domain FDN01_06570 PF01380 SIS domain FDN01_06570 PF00571 CBS domain FDN01_06585 PF03968 OstA-like protein FDN01_06590 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDN01_06590 PF00005 ABC transporter FDN01_06595 PF02321 Outer membrane efflux protein FDN01_06600 PF03412 Peptidase C39 family FDN01_06600 PF00005 ABC transporter FDN01_06600 PF00664 ABC transporter transmembrane region FDN01_06615 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_06625 PF01596 O-methyltransferase FDN01_06635 PF00037 4Fe-4S binding domain FDN01_06635 PF11953 Domain of unknown function (DUF3470) FDN01_06645 PF05190 MutS family domain IV FDN01_06645 PF00488 MutS domain V FDN01_06645 PF05188 MutS domain II FDN01_06645 PF01624 MutS domain I FDN01_06645 PF05192 MutS domain III FDN01_06650 PF01037 Lrp/AsnC ligand binding domain FDN01_06655 PF00892 EamA-like transporter family FDN01_06660 PF00990 Diguanylate cyclase, GGDEF domain FDN01_06660 PF00563 EAL domain FDN01_06660 PF03707 Bacterial signalling protein N terminal repeat FDN01_06665 PF03279 Bacterial lipid A biosynthesis acyltransferase FDN01_06680 PF07690 Major Facilitator Superfamily FDN01_06700 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN01_06700 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN01_06720 PF13419 Haloacid dehalogenase-like hydrolase FDN01_06735 PF16671 Actin cross-linking domain FDN01_06735 PF04717 Type VI secretion system, phage-baseplate injector FDN01_06740 PF05593 RHS Repeat FDN01_06740 PF03527 RHS protein FDN01_06740 PF14220 Domain of unknown function (DUF4329) FDN01_06755 PF03466 LysR substrate binding domain FDN01_06755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_06760 PF01566 Natural resistance-associated macrophage protein FDN01_06765 PF03746 LamB/YcsF family FDN01_06770 PF07286 Protein of unknown function (DUF1445) FDN01_06780 PF00364 Biotin-requiring enzyme FDN01_06780 PF00289 Biotin carboxylase, N-terminal domain FDN01_06780 PF02785 Biotin carboxylase C-terminal domain FDN01_06780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN01_06785 PF00654 Voltage gated chloride channel FDN01_06810 PF00440 Bacterial regulatory proteins, tetR family FDN01_06820 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_06820 PF13823 Alcohol dehydrogenase GroES-associated FDN01_06820 PF00107 Zinc-binding dehydrogenase FDN01_06835 PF00289 Biotin carboxylase, N-terminal domain FDN01_06835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN01_06835 PF02785 Biotin carboxylase C-terminal domain FDN01_06840 PF02525 Flavodoxin-like fold FDN01_06860 PF01402 Ribbon-helix-helix protein, copG family FDN01_06860 PF08753 NikR C terminal nickel binding domain FDN01_06865 PF01425 Amidase FDN01_06870 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN01_06875 PF00005 ABC transporter FDN01_06945 PF00691 OmpA family FDN01_06945 PF01389 OmpA-like transmembrane domain FDN01_06955 PF17871 AAA lid domain FDN01_06955 PF00004 ATPase family associated with various cellular activities (AAA) FDN01_06955 PF10431 C-terminal, D2-small domain, of ClpB protein FDN01_06955 PF07724 AAA domain (Cdc48 subfamily) FDN01_06985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_06985 PF03466 LysR substrate binding domain FDN01_06995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDN01_07000 PF07690 Major Facilitator Superfamily FDN01_07015 PF02677 Epoxyqueuosine reductase QueH FDN01_07030 PF09278 MerR, DNA binding FDN01_07030 PF00376 MerR family regulatory protein FDN01_07045 PF00701 Dihydrodipicolinate synthetase family FDN01_07055 PF00392 Bacterial regulatory proteins, gntR family FDN01_07060 PF05544 Proline racemase FDN01_07065 PF01266 FAD dependent oxidoreductase FDN01_07075 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_07075 PF04324 BFD-like [2Fe-2S] binding domain FDN01_07085 PF00083 Sugar (and other) transporter FDN01_07090 PF00171 Aldehyde dehydrogenase family FDN01_07095 PF13520 Amino acid permease FDN01_07100 PF03313 Serine dehydratase alpha chain FDN01_07100 PF03315 Serine dehydratase beta chain FDN01_07105 PF01575 MaoC like domain FDN01_07105 PF00171 Aldehyde dehydrogenase family FDN01_07110 PF05138 Phenylacetic acid catabolic protein FDN01_07115 PF06243 Phenylacetic acid degradation B FDN01_07120 PF05138 Phenylacetic acid catabolic protein FDN01_07125 PF01883 Iron-sulfur cluster assembly protein FDN01_07130 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN01_07130 PF00970 Oxidoreductase FAD-binding domain FDN01_07130 PF00175 Oxidoreductase NAD-binding domain FDN01_07135 PF00378 Enoyl-CoA hydratase/isomerase FDN01_07140 PF00378 Enoyl-CoA hydratase/isomerase FDN01_07145 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FDN01_07145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN01_07145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN01_07150 PF02803 Thiolase, C-terminal domain FDN01_07150 PF00108 Thiolase, N-terminal domain FDN01_07155 PF00501 AMP-binding enzyme FDN01_07155 PF14535 AMP-binding enzyme C-terminal domain FDN01_07160 PF07848 PaaX-like protein FDN01_07160 PF08223 PaaX-like protein C-terminal domain FDN01_07165 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_07170 PF03061 Thioesterase superfamily FDN01_07210 PF00199 Catalase FDN01_07215 PF01292 Prokaryotic cytochrome b561 FDN01_07235 PF12697 Alpha/beta hydrolase family FDN01_07240 PF01613 Flavin reductase like domain FDN01_07245 PF00296 Luciferase-like monooxygenase FDN01_07250 PF00171 Aldehyde dehydrogenase family FDN01_07260 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDN01_07270 PF00171 Aldehyde dehydrogenase family FDN01_07275 PF02627 Carboxymuconolactone decarboxylase family FDN01_07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07280 PF03466 LysR substrate binding domain FDN01_07285 PF02525 Flavodoxin-like fold FDN01_07290 PF01614 Bacterial transcriptional regulator FDN01_07290 PF09339 IclR helix-turn-helix domain FDN01_07295 PF01494 FAD binding domain FDN01_07300 PF00392 Bacterial regulatory proteins, gntR family FDN01_07300 PF07702 UTRA domain FDN01_07310 PF00005 ABC transporter FDN01_07310 PF08402 TOBE domain FDN01_07315 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_07320 PF01266 FAD dependent oxidoreductase FDN01_07325 PF00266 Aminotransferase class-V FDN01_07330 PF13419 Haloacid dehalogenase-like hydrolase FDN01_07335 PF07690 Major Facilitator Superfamily FDN01_07340 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_07340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_07340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_07345 PF02515 CoA-transferase family III FDN01_07350 PF09339 IclR helix-turn-helix domain FDN01_07355 PF00378 Enoyl-CoA hydratase/isomerase FDN01_07360 PF03060 Nitronate monooxygenase FDN01_07365 PF07690 Major Facilitator Superfamily FDN01_07370 PF09339 IclR helix-turn-helix domain FDN01_07375 PF00108 Thiolase, N-terminal domain FDN01_07375 PF02803 Thiolase, C-terminal domain FDN01_07380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN01_07380 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FDN01_07380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN01_07390 PF00378 Enoyl-CoA hydratase/isomerase FDN01_07395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_07395 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_07395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_07400 PF07690 Major Facilitator Superfamily FDN01_07405 PF01144 Coenzyme A transferase FDN01_07410 PF01144 Coenzyme A transferase FDN01_07420 PF07690 Major Facilitator Superfamily FDN01_07430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_07430 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDN01_07430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_07430 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_07445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07445 PF03466 LysR substrate binding domain FDN01_07450 PF00682 HMGL-like FDN01_07455 PF00364 Biotin-requiring enzyme FDN01_07455 PF00289 Biotin carboxylase, N-terminal domain FDN01_07455 PF02785 Biotin carboxylase C-terminal domain FDN01_07455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN01_07460 PF00378 Enoyl-CoA hydratase/isomerase FDN01_07465 PF01039 Carboxyl transferase domain FDN01_07470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_07470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_07470 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_07475 PF00440 Bacterial regulatory proteins, tetR family FDN01_07480 PF00501 AMP-binding enzyme FDN01_07480 PF13193 AMP-binding enzyme C-terminal domain FDN01_07500 PF03466 LysR substrate binding domain FDN01_07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07530 PF18146 Damage-inducible protein CinA KH domain FDN01_07530 PF00994 Probable molybdopterin binding domain FDN01_07530 PF02464 Competence-damaged protein FDN01_07540 PF18011 C-terminal domain found in long catalases FDN01_07540 PF00199 Catalase FDN01_07540 PF06628 Catalase-related immune-responsive FDN01_07565 PF00717 Peptidase S24-like FDN01_07575 PF01037 Lrp/AsnC ligand binding domain FDN01_07575 PF13404 AsnC-type helix-turn-helix domain FDN01_07585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_07585 PF09308 LuxQ, periplasmic FDN01_07585 PF00072 Response regulator receiver domain FDN01_07585 PF00512 His Kinase A (phospho-acceptor) domain FDN01_07590 PF00072 Response regulator receiver domain FDN01_07605 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_07610 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_07615 PF00005 ABC transporter FDN01_07620 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN01_07625 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDN01_07635 PF03466 LysR substrate binding domain FDN01_07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07640 PF01810 LysE type translocator FDN01_07645 PF00266 Aminotransferase class-V FDN01_07655 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_07660 PF00581 Rhodanese-like domain FDN01_07670 PF03466 LysR substrate binding domain FDN01_07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07675 PF02798 Glutathione S-transferase, N-terminal domain FDN01_07680 PF14834 Glutathione S-transferase, C-terminal domain FDN01_07680 PF02798 Glutathione S-transferase, N-terminal domain FDN01_07685 PF03466 LysR substrate binding domain FDN01_07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07690 PF03788 LrgA family FDN01_07695 PF04172 LrgB-like family FDN01_07700 PF00392 Bacterial regulatory proteins, gntR family FDN01_07700 PF00155 Aminotransferase class I and II FDN01_07715 PF07690 Major Facilitator Superfamily FDN01_07720 PF16957 Malonate decarboxylase, alpha subunit, transporter FDN01_07725 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FDN01_07730 PF06857 Malonate decarboxylase delta subunit (MdcD) FDN01_07735 PF01039 Carboxyl transferase domain FDN01_07745 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FDN01_07750 PF00698 Acyl transferase domain FDN01_07765 PF03466 LysR substrate binding domain FDN01_07765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07770 PF00155 Aminotransferase class I and II FDN01_07770 PF00392 Bacterial regulatory proteins, gntR family FDN01_07780 PF02322 Cytochrome bd terminal oxidase subunit II FDN01_07800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_07800 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_07800 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN01_07805 PF00296 Luciferase-like monooxygenase FDN01_07810 PF00083 Sugar (and other) transporter FDN01_07820 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDN01_07825 PF00005 ABC transporter FDN01_07830 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_07835 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FDN01_07840 PF01177 Asp/Glu/Hydantoin racemase FDN01_07845 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDN01_07855 PF03466 LysR substrate binding domain FDN01_07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07865 PF13382 Adenine deaminase C-terminal domain FDN01_07865 PF01979 Amidohydrolase family FDN01_07875 PF03960 ArsC family FDN01_07880 PF01022 Bacterial regulatory protein, arsR family FDN01_07885 PF01758 Sodium Bile acid symporter family FDN01_07895 PF03466 LysR substrate binding domain FDN01_07895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_07910 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_07910 PF13192 Thioredoxin domain FDN01_07925 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_07930 PF00588 SpoU rRNA Methylase family FDN01_07935 PF01336 OB-fold nucleic acid binding domain FDN01_07935 PF02811 PHP domain FDN01_07935 PF14579 Helix-hairpin-helix motif FDN01_07935 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDN01_07935 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDN01_07940 PF00710 Asparaginase, N-terminal FDN01_07940 PF17763 Glutaminase/Asparaginase C-terminal domain FDN01_07945 PF00375 Sodium:dicarboxylate symporter family FDN01_07950 PF00155 Aminotransferase class I and II FDN01_07955 PF01641 SelR domain FDN01_07960 PF00255 Glutathione peroxidase FDN01_07965 PF12833 Helix-turn-helix domain FDN01_07965 PF12852 Cupin FDN01_07975 PF00155 Aminotransferase class I and II FDN01_07980 PF08335 GlnD PII-uridylyltransferase FDN01_07980 PF01966 HD domain FDN01_07980 PF01909 Nucleotidyltransferase domain FDN01_07985 PF02222 ATP-grasp domain FDN01_07995 PF05437 Branched-chain amino acid transport protein (AzlD) FDN01_08000 PF03591 AzlC protein FDN01_08025 PF01926 50S ribosome-binding GTPase FDN01_08025 PF06071 Protein of unknown function (DUF933) FDN01_08030 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_08035 PF00005 ABC transporter FDN01_08035 PF09383 NIL domain FDN01_08040 PF03180 NLPA lipoprotein FDN01_08045 PF03180 NLPA lipoprotein FDN01_08050 PF00296 Luciferase-like monooxygenase FDN01_08060 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN01_08060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_08075 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_08080 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_08085 PF00005 ABC transporter FDN01_08095 PF01037 Lrp/AsnC ligand binding domain FDN01_08100 PF01709 Transcriptional regulator FDN01_08110 PF00440 Bacterial regulatory proteins, tetR family FDN01_08130 PF03466 LysR substrate binding domain FDN01_08130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_08140 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDN01_08150 PF00892 EamA-like transporter family FDN01_08175 PF13954 PapC N-terminal domain FDN01_08175 PF13953 PapC C-terminal domain FDN01_08175 PF00577 Outer membrane usher protein FDN01_08180 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FDN01_08180 PF02753 Pili assembly chaperone PapD, C-terminal domain FDN01_08185 PF16970 Type-1 fimbrial protein, A FDN01_08190 PF13737 Transposase DDE domain FDN01_08205 PF04055 Radical SAM superfamily FDN01_08205 PF06968 Biotin and Thiamin Synthesis associated domain FDN01_08210 PF08331 Domain of unknown function (DUF1730) FDN01_08215 PF01256 Carbohydrate kinase FDN01_08215 PF03853 YjeF-related protein N-terminus FDN01_08220 PF02075 Crossover junction endodeoxyribonuclease RuvC FDN01_08235 PF00905 Penicillin binding protein transpeptidase domain FDN01_08255 PF00438 S-adenosylmethionine synthetase, N-terminal domain FDN01_08255 PF02772 S-adenosylmethionine synthetase, central domain FDN01_08255 PF02773 S-adenosylmethionine synthetase, C-terminal domain FDN01_08260 PF02779 Transketolase, pyrimidine binding domain FDN01_08260 PF02780 Transketolase, C-terminal domain FDN01_08260 PF00456 Transketolase, thiamine diphosphate binding domain FDN01_08270 PF04264 YceI-like domain FDN01_08280 PF09992 Phosphodiester glycosidase FDN01_08290 PF05958 tRNA (Uracil-5-)-methyltransferase FDN01_08295 PF04229 GrpB protein FDN01_08300 PF01619 Proline dehydrogenase FDN01_08300 PF00171 Aldehyde dehydrogenase family FDN01_08300 PF14850 DNA-binding domain of Proline dehydrogenase FDN01_08300 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FDN01_08305 PF01037 Lrp/AsnC ligand binding domain FDN01_08310 PF00474 Sodium:solute symporter family FDN01_08315 PF02146 Sir2 family FDN01_08320 PF01597 Glycine cleavage H-protein FDN01_08325 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDN01_08325 PF12833 Helix-turn-helix domain FDN01_08335 PF00664 ABC transporter transmembrane region FDN01_08335 PF00005 ABC transporter FDN01_08340 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FDN01_08345 PF06912 Protein of unknown function (DUF1275) FDN01_08350 PF00375 Sodium:dicarboxylate symporter family FDN01_08365 PF08007 Cupin superfamily protein FDN01_08370 PF02545 Maf-like protein FDN01_08380 PF00162 Phosphoglycerate kinase FDN01_08390 PF01116 Fructose-bisphosphate aldolase class-II FDN01_08395 PF00639 PPIC-type PPIASE domain FDN01_08395 PF09312 SurA N-terminal domain FDN01_08400 PF04453 LPS transport system D FDN01_08400 PF03968 OstA-like protein FDN01_08405 PF01636 Phosphotransferase enzyme family FDN01_08410 PF00483 Nucleotidyl transferase FDN01_08415 PF02527 rRNA small subunit methyltransferase G FDN01_08420 PF13614 AAA domain FDN01_08425 PF17762 HTH domain found in ParB protein FDN01_08425 PF02195 ParB-like nuclease domain FDN01_08430 PF01618 MotA/TolQ/ExbB proton channel family FDN01_08440 PF00005 ABC transporter FDN01_08440 PF00664 ABC transporter transmembrane region FDN01_08445 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FDN01_08455 PF09115 DNA polymerase III, delta subunit, C terminal FDN01_08465 PF01026 TatD related DNase FDN01_08480 PF02501 Type II secretion system (T2SS), protein I FDN01_08480 PF07963 Prokaryotic N-terminal methylation motif FDN01_08485 PF11612 Type II secretion system (T2SS), protein J FDN01_08485 PF07963 Prokaryotic N-terminal methylation motif FDN01_08490 PF03934 Type II secretion system (T2SS), protein K FDN01_08500 PF03167 Uracil DNA glycosylase superfamily FDN01_08510 PF14437 MafB19-like deaminase FDN01_08520 PF02224 Cytidylate kinase FDN01_08525 PF00575 S1 RNA binding domain FDN01_08530 PF00216 Bacterial DNA-binding protein FDN01_08540 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FDN01_08550 PF00743 Flavin-binding monooxygenase-like FDN01_08560 PF03969 AFG1-like ATPase FDN01_08620 PF00772 DnaB-like helicase N terminal domain FDN01_08620 PF03796 DnaB-like helicase C terminal domain FDN01_08710 PF04860 Phage portal protein FDN01_08765 PF01464 Transglycosylase SLT domain FDN01_08765 PF01551 Peptidase family M23 FDN01_08765 PF10145 Phage-related minor tail protein FDN01_08835 PF01274 Malate synthase FDN01_08845 PF02472 Biopolymer transport protein ExbD/TolR FDN01_08850 PF02472 Biopolymer transport protein ExbD/TolR FDN01_08855 PF01618 MotA/TolQ/ExbB proton channel family FDN01_08865 PF07715 TonB-dependent Receptor Plug Domain FDN01_08865 PF00593 TonB dependent receptor FDN01_08885 PF01432 Peptidase family M3 FDN01_08890 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_08895 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_08915 PF00459 Inositol monophosphatase family FDN01_08925 PF01649 Ribosomal protein S20 FDN01_08930 PF13460 NAD(P)H-binding FDN01_08935 PF03737 Aldolase/RraA FDN01_08955 PF02559 CarD-like/TRCF domain FDN01_08955 PF00271 Helicase conserved C-terminal domain FDN01_08955 PF00270 DEAD/DEAH box helicase FDN01_08955 PF03461 TRCF domain FDN01_08955 PF17757 UvrB interaction domain FDN01_08965 PF00211 Adenylate and Guanylate cyclase catalytic domain FDN01_08970 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN01_08975 PF00012 Hsp70 protein FDN01_08980 PF00226 DnaJ domain FDN01_08980 PF07743 HSCB C-terminal oligomerisation domain FDN01_08985 PF01521 Iron-sulphur cluster biosynthesis FDN01_08990 PF01592 NifU-like N terminal domain FDN01_08995 PF00266 Aminotransferase class-V FDN01_09000 PF02082 Transcriptional regulator FDN01_09015 PF00216 Bacterial DNA-binding protein FDN01_09020 PF09312 SurA N-terminal domain FDN01_09020 PF00639 PPIC-type PPIASE domain FDN01_09025 PF12852 Cupin FDN01_09025 PF12833 Helix-turn-helix domain FDN01_09030 PF00487 Fatty acid desaturase FDN01_09035 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_09035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_09035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_09040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_09040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_09040 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_09045 PF03109 ABC1 family FDN01_09055 PF04073 Aminoacyl-tRNA editing domain FDN01_09060 PF06276 Ferric iron reductase FhuF-like transporter FDN01_09060 PF04183 IucA / IucC family FDN01_09065 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FDN01_09070 PF07690 Major Facilitator Superfamily FDN01_09080 PF06276 Ferric iron reductase FhuF-like transporter FDN01_09080 PF04183 IucA / IucC family FDN01_09140 PF02277 Phosphoribosyltransferase FDN01_09155 PF02654 Cobalamin-5-phosphate synthase FDN01_09160 PF00793 DAHP synthetase I family FDN01_09165 PF01925 Sulfite exporter TauE/SafE FDN01_09185 PF07715 TonB-dependent Receptor Plug Domain FDN01_09185 PF00593 TonB dependent receptor FDN01_09190 PF02684 Lipid-A-disaccharide synthetase FDN01_09200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN01_09205 PF00005 ABC transporter FDN01_09240 PF01230 HIT domain FDN01_09270 PF08241 Methyltransferase domain FDN01_09275 PF00561 alpha/beta hydrolase fold FDN01_09280 PF01053 Cys/Met metabolism PLP-dependent enzyme FDN01_09290 PF02575 YbaB/EbfC DNA-binding family FDN01_09295 PF13662 Toprim domain FDN01_09295 PF02132 RecR protein FDN01_09300 PF13737 Transposase DDE domain FDN01_09325 PF05166 YcgL domain FDN01_09335 PF00004 ATPase family associated with various cellular activities (AAA) FDN01_09335 PF01434 Peptidase family M41 FDN01_09335 PF17862 AAA+ lid domain FDN01_09345 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_09350 PF05175 Methyltransferase small domain FDN01_09355 PF01264 Chorismate synthase FDN01_09360 PF00990 Diguanylate cyclase, GGDEF domain FDN01_09360 PF08448 PAS fold FDN01_09375 PF04055 Radical SAM superfamily FDN01_09380 PF00676 Dehydrogenase E1 component FDN01_09385 PF02779 Transketolase, pyrimidine binding domain FDN01_09385 PF02780 Transketolase, C-terminal domain FDN01_09390 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDN01_09390 PF00364 Biotin-requiring enzyme FDN01_09390 PF02817 e3 binding domain FDN01_09395 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_09395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDN01_09400 PF00106 short chain dehydrogenase FDN01_09405 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_09405 PF00107 Zinc-binding dehydrogenase FDN01_09410 PF01062 Bestrophin, RFP-TM, chloride channel FDN01_09415 PF00072 Response regulator receiver domain FDN01_09415 PF02954 Bacterial regulatory protein, Fis family FDN01_09415 PF00158 Sigma-54 interaction domain FDN01_09420 PF04273 Putative phosphatase (DUF442) FDN01_09420 PF00753 Metallo-beta-lactamase superfamily FDN01_09425 PF04273 Putative phosphatase (DUF442) FDN01_09425 PF00753 Metallo-beta-lactamase superfamily FDN01_09430 PF01925 Sulfite exporter TauE/SafE FDN01_09445 PF12833 Helix-turn-helix domain FDN01_09445 PF06445 GyrI-like small molecule binding domain FDN01_09450 PF01638 HxlR-like helix-turn-helix FDN01_09455 PF02525 Flavodoxin-like fold FDN01_09480 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDN01_09485 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_09490 PF00005 ABC transporter FDN01_09505 PF00083 Sugar (and other) transporter FDN01_09510 PF07715 TonB-dependent Receptor Plug Domain FDN01_09510 PF00593 TonB dependent receptor FDN01_09515 PF10415 Fumarase C C-terminus FDN01_09515 PF00206 Lyase FDN01_09530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_09530 PF03466 LysR substrate binding domain FDN01_09535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_09535 PF03466 LysR substrate binding domain FDN01_09540 PF00108 Thiolase, N-terminal domain FDN01_09540 PF02803 Thiolase, C-terminal domain FDN01_09545 PF02667 Short chain fatty acid transporter FDN01_09550 PF01144 Coenzyme A transferase FDN01_09555 PF01144 Coenzyme A transferase FDN01_09560 PF03466 LysR substrate binding domain FDN01_09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_09585 PF12833 Helix-turn-helix domain FDN01_09585 PF06719 AraC-type transcriptional regulator N-terminus FDN01_09590 PF07690 Major Facilitator Superfamily FDN01_09595 PF01738 Dienelactone hydrolase family FDN01_09610 PF01613 Flavin reductase like domain FDN01_09620 PF14525 AraC-binding-like domain FDN01_09620 PF12833 Helix-turn-helix domain FDN01_09625 PF00970 Oxidoreductase FAD-binding domain FDN01_09625 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN01_09625 PF00175 Oxidoreductase NAD-binding domain FDN01_09630 PF00866 Ring hydroxylating beta subunit FDN01_09635 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN01_09635 PF00355 Rieske [2Fe-2S] domain FDN01_09640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_09640 PF03459 TOBE domain FDN01_09650 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_09655 PF03459 TOBE domain FDN01_09655 PF00005 ABC transporter FDN01_09660 PF00106 short chain dehydrogenase FDN01_09665 PF00857 Isochorismatase family FDN01_09665 PF00550 Phosphopantetheine attachment site FDN01_09675 PF00149 Calcineurin-like phosphoesterase FDN01_09680 PF17941 Polyphosphate kinase C-terminal domain 1 FDN01_09680 PF13089 Polyphosphate kinase N-terminal domain FDN01_09680 PF02503 Polyphosphate kinase middle domain FDN01_09680 PF13090 Polyphosphate kinase C-terminal domain 2 FDN01_09685 PF08042 PqqA family FDN01_09690 PF12706 Beta-lactamase superfamily domain FDN01_09695 PF03070 TENA/THI-4/PQQC family FDN01_09700 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FDN01_09705 PF13186 Iron-sulfur cluster-binding domain FDN01_09705 PF04055 Radical SAM superfamily FDN01_09710 PF01244 Membrane dipeptidase (Peptidase family M19) FDN01_09730 PF13091 PLD-like domain FDN01_09745 PF00199 Catalase FDN01_09755 PF00107 Zinc-binding dehydrogenase FDN01_09755 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_09765 PF00419 Fimbrial protein FDN01_09770 PF13953 PapC C-terminal domain FDN01_09770 PF13954 PapC N-terminal domain FDN01_09770 PF00577 Outer membrane usher protein FDN01_09775 PF02753 Pili assembly chaperone PapD, C-terminal domain FDN01_09775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FDN01_09785 PF16970 Type-1 fimbrial protein, A FDN01_09805 PF01266 FAD dependent oxidoreductase FDN01_09820 PF01593 Flavin containing amine oxidoreductase FDN01_09825 PF00743 Flavin-binding monooxygenase-like FDN01_09830 PF12146 Serine aminopeptidase, S33 FDN01_09835 PF02321 Outer membrane efflux protein FDN01_09840 PF00873 AcrB/AcrD/AcrF family FDN01_09845 PF00529 HlyD membrane-fusion protein of T1SS FDN01_09845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN01_09850 PF00072 Response regulator receiver domain FDN01_09850 PF00486 Transcriptional regulatory protein, C terminal FDN01_09855 PF00672 HAMP domain FDN01_09855 PF16527 Two-component sensor protein CpxA, periplasmic domain FDN01_09855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_09855 PF00512 His Kinase A (phospho-acceptor) domain FDN01_09865 PF12833 Helix-turn-helix domain FDN01_09865 PF02311 AraC-like ligand binding domain FDN01_09870 PF12146 Serine aminopeptidase, S33 FDN01_09925 PF02824 TGS domain FDN01_09925 PF04607 Region found in RelA / SpoT proteins FDN01_09925 PF13291 ACT domain FDN01_09935 PF01975 Survival protein SurE FDN01_09960 PF07690 Major Facilitator Superfamily FDN01_09965 PF13533 Biotin-lipoyl like FDN01_09970 PF01425 Amidase FDN01_09975 PF00196 Bacterial regulatory proteins, luxR family FDN01_09990 PF13737 Transposase DDE domain FDN01_10060 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDN01_10065 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDN01_10065 PF14572 Phosphoribosyl synthetase-associated domain FDN01_10085 PF00005 ABC transporter FDN01_10100 PF00107 Zinc-binding dehydrogenase FDN01_10100 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_10115 PF12833 Helix-turn-helix domain FDN01_10115 PF06719 AraC-type transcriptional regulator N-terminus FDN01_10120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDN01_10120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDN01_10125 PF07690 Major Facilitator Superfamily FDN01_10130 PF01370 NAD dependent epimerase/dehydratase family FDN01_10135 PF03466 LysR substrate binding domain FDN01_10135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_10145 PF00920 Dehydratase family FDN01_10150 PF00171 Aldehyde dehydrogenase family FDN01_10165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN01_10165 PF00529 HlyD membrane-fusion protein of T1SS FDN01_10190 PF01842 ACT domain FDN01_10190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDN01_10190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDN01_10195 PF07690 Major Facilitator Superfamily FDN01_10215 PF03466 LysR substrate binding domain FDN01_10215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_10225 PF08450 SMP-30/Gluconolactonase/LRE-like region FDN01_10240 PF04909 Amidohydrolase FDN01_10245 PF07690 Major Facilitator Superfamily FDN01_10260 PF13018 Extended Signal Peptide of Type V secretion system FDN01_10260 PF13332 Hemagglutinin repeat FDN01_10260 PF05860 haemagglutination activity domain FDN01_10260 PF04829 Pre-toxin domain with VENN motif FDN01_10265 PF08479 POTRA domain, ShlB-type FDN01_10265 PF17287 POTRA domain FDN01_10265 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FDN01_10280 PF07687 Peptidase dimerisation domain FDN01_10280 PF01546 Peptidase family M20/M25/M40 FDN01_10290 PF00999 Sodium/hydrogen exchanger family FDN01_10290 PF02254 TrkA-N domain FDN01_10295 PF07995 Glucose / Sorbosone dehydrogenase FDN01_10305 PF00857 Isochorismatase family FDN01_10315 PF00440 Bacterial regulatory proteins, tetR family FDN01_10315 PF08359 YsiA-like protein, C-terminal region FDN01_10320 PF12706 Beta-lactamase superfamily domain FDN01_10330 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_10340 PF00376 MerR family regulatory protein FDN01_10340 PF09278 MerR, DNA binding FDN01_10345 PF01872 RibD C-terminal domain FDN01_10350 PF00106 short chain dehydrogenase FDN01_10355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN01_10355 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_10360 PF01047 MarR family FDN01_10365 PF07859 alpha/beta hydrolase fold FDN01_10385 PF06628 Catalase-related immune-responsive FDN01_10385 PF00199 Catalase FDN01_10390 PF00561 alpha/beta hydrolase fold FDN01_10400 PF00171 Aldehyde dehydrogenase family FDN01_10405 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_10405 PF00107 Zinc-binding dehydrogenase FDN01_10410 PF00474 Sodium:solute symporter family FDN01_10415 PF04341 Protein of unknown function, DUF485 FDN01_10420 PF00501 AMP-binding enzyme FDN01_10420 PF13193 AMP-binding enzyme C-terminal domain FDN01_10435 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_10435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_10435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_10455 PF00171 Aldehyde dehydrogenase family FDN01_10465 PF07690 Major Facilitator Superfamily FDN01_10470 PF00920 Dehydratase family FDN01_10475 PF07729 FCD domain FDN01_10475 PF00392 Bacterial regulatory proteins, gntR family FDN01_10485 PF03466 LysR substrate binding domain FDN01_10485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_10490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDN01_10490 PF13378 Enolase C-terminal domain-like FDN01_10495 PF02426 Muconolactone delta-isomerase FDN01_10500 PF04444 Catechol dioxygenase N terminus FDN01_10500 PF00775 Dioxygenase FDN01_10505 PF01144 Coenzyme A transferase FDN01_10510 PF01144 Coenzyme A transferase FDN01_10515 PF00108 Thiolase, N-terminal domain FDN01_10515 PF02803 Thiolase, C-terminal domain FDN01_10520 PF12146 Serine aminopeptidase, S33 FDN01_10525 PF01804 Penicillin amidase FDN01_10530 PF00171 Aldehyde dehydrogenase family FDN01_10540 PF01179 Copper amine oxidase, enzyme domain FDN01_10540 PF02727 Copper amine oxidase, N2 domain FDN01_10540 PF02728 Copper amine oxidase, N3 domain FDN01_10540 PF07833 Copper amine oxidase N-terminal domain FDN01_10545 PF02311 AraC-like ligand binding domain FDN01_10545 PF12833 Helix-turn-helix domain FDN01_10550 PF01613 Flavin reductase like domain FDN01_10555 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN01_10555 PF00175 Oxidoreductase NAD-binding domain FDN01_10570 PF00355 Rieske [2Fe-2S] domain FDN01_10570 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN01_10585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN01_10590 PF01425 Amidase FDN01_10600 PF07690 Major Facilitator Superfamily FDN01_10610 PF00106 short chain dehydrogenase FDN01_10625 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_10625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_10625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_10630 PF03466 LysR substrate binding domain FDN01_10630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_10635 PF01614 Bacterial transcriptional regulator FDN01_10635 PF09339 IclR helix-turn-helix domain FDN01_10640 PF00753 Metallo-beta-lactamase superfamily FDN01_10650 PF04143 Sulphur transport FDN01_10660 PF13360 PQQ-like domain FDN01_10660 PF01011 PQQ enzyme repeat FDN01_10665 PF04966 Carbohydrate-selective porin, OprB family FDN01_10675 PF01487 Type I 3-dehydroquinase FDN01_10680 PF00775 Dioxygenase FDN01_10685 PF00775 Dioxygenase FDN01_10685 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FDN01_10690 PF02627 Carboxymuconolactone decarboxylase family FDN01_10695 PF07690 Major Facilitator Superfamily FDN01_10700 PF00561 alpha/beta hydrolase fold FDN01_10705 PF00206 Lyase FDN01_10705 PF10397 Adenylosuccinate lyase C-terminus FDN01_10710 PF00108 Thiolase, N-terminal domain FDN01_10710 PF02803 Thiolase, C-terminal domain FDN01_10715 PF01144 Coenzyme A transferase FDN01_10720 PF01144 Coenzyme A transferase FDN01_10725 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FDN01_10730 PF04977 Septum formation initiator FDN01_10735 PF04239 Protein of unknown function (DUF421) FDN01_10745 PF00793 DAHP synthetase I family FDN01_10750 PF06418 CTP synthase N-terminus FDN01_10750 PF00117 Glutamine amidotransferase class-I FDN01_10780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN01_10780 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_10795 PF00793 DAHP synthetase I family FDN01_10800 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FDN01_10805 PF00004 ATPase family associated with various cellular activities (AAA) FDN01_10805 PF07724 AAA domain (Cdc48 subfamily) FDN01_10805 PF17871 AAA lid domain FDN01_10805 PF02861 Clp amino terminal domain, pathogenicity island component FDN01_10805 PF10431 C-terminal, D2-small domain, of ClpB protein FDN01_10810 PF02617 ATP-dependent Clp protease adaptor protein ClpS FDN01_10820 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDN01_10820 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDN01_10835 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FDN01_10840 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_10840 PF00585 C-terminal regulatory domain of Threonine dehydratase FDN01_10845 PF02080 TrkA-C domain FDN01_10845 PF02254 TrkA-N domain FDN01_10850 PF02386 Cation transport protein FDN01_10855 PF02253 Phospholipase A1 FDN01_10860 PF08367 Peptidase M16C associated FDN01_10860 PF05193 Peptidase M16 inactive domain FDN01_10860 PF00675 Insulinase (Peptidase family M16) FDN01_10865 PF07715 TonB-dependent Receptor Plug Domain FDN01_10865 PF00593 TonB dependent receptor FDN01_10870 PF00294 pfkB family carbohydrate kinase FDN01_10880 PF07290 Protein of unknown function (DUF1449) FDN01_10900 PF01654 Cytochrome bd terminal oxidase subunit I FDN01_10905 PF02322 Cytochrome bd terminal oxidase subunit II FDN01_10910 PF08173 Membrane bound YbgT-like protein FDN01_10925 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FDN01_10935 PF02881 SRP54-type protein, helical bundle domain FDN01_10935 PF00448 SRP54-type protein, GTPase domain FDN01_10960 PF00571 CBS domain FDN01_10960 PF00478 IMP dehydrogenase / GMP reductase domain FDN01_10965 PF00202 Aminotransferase class-III FDN01_10970 PF00462 Glutaredoxin FDN01_10980 PF03466 LysR substrate binding domain FDN01_10980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_10985 PF00557 Metallopeptidase family M24 FDN01_10990 PF05525 Branched-chain amino acid transport protein FDN01_11015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDN01_11015 PF00381 PTS HPr component phosphorylation site FDN01_11015 PF02896 PEP-utilising enzyme, TIM barrel domain FDN01_11015 PF00391 PEP-utilising enzyme, mobile domain FDN01_11015 PF05524 PEP-utilising enzyme, N-terminal FDN01_11020 PF00294 pfkB family carbohydrate kinase FDN01_11025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDN01_11025 PF02378 Phosphotransferase system, EIIC FDN01_11045 PF00563 EAL domain FDN01_11045 PF03707 Bacterial signalling protein N terminal repeat FDN01_11045 PF00990 Diguanylate cyclase, GGDEF domain FDN01_11055 PF07995 Glucose / Sorbosone dehydrogenase FDN01_11060 PF02586 SOS response associated peptidase (SRAP) FDN01_11065 PF00916 Sulfate permease family FDN01_11065 PF01740 STAS domain FDN01_11070 PF05922 Peptidase inhibitor I9 FDN01_11070 PF00082 Subtilase family FDN01_11080 PF00324 Amino acid permease FDN01_11085 PF00266 Aminotransferase class-V FDN01_11090 PF01037 Lrp/AsnC ligand binding domain FDN01_11115 PF13419 Haloacid dehalogenase-like hydrolase FDN01_11120 PF01479 S4 domain FDN01_11125 PF00154 recA bacterial DNA recombination protein FDN01_11130 PF02631 RecX family FDN01_11145 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_11145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FDN01_11150 PF07977 FabA-like domain FDN01_11155 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_11155 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FDN01_11165 PF07244 Surface antigen variable number repeat FDN01_11165 PF01103 Surface antigen FDN01_11170 PF02163 Peptidase family M50 FDN01_11170 PF13180 PDZ domain FDN01_11170 PF17820 PDZ domain FDN01_11175 PF13288 DXP reductoisomerase C-terminal domain FDN01_11175 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FDN01_11175 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FDN01_11185 PF01255 Putative undecaprenyl diphosphate synthase FDN01_11190 PF01765 Ribosome recycling factor FDN01_11195 PF00696 Amino acid kinase family FDN01_11200 PF04055 Radical SAM superfamily FDN01_11200 PF18693 TRAM domain FDN01_11200 PF00919 Uncharacterized protein family UPF0004 FDN01_11210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_11210 PF00512 His Kinase A (phospho-acceptor) domain FDN01_11210 PF00989 PAS fold FDN01_11215 PF00158 Sigma-54 interaction domain FDN01_11215 PF00072 Response regulator receiver domain FDN01_11215 PF02954 Bacterial regulatory protein, Fis family FDN01_11220 PF00440 Bacterial regulatory proteins, tetR family FDN01_11225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDN01_11225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDN01_11235 PF02542 YgbB family FDN01_11245 PF01266 FAD dependent oxidoreductase FDN01_11270 PF10415 Fumarase C C-terminus FDN01_11270 PF00206 Lyase FDN01_11275 PF16363 GDP-mannose 4,6 dehydratase FDN01_11280 PF02635 DsrE/DsrF-like family FDN01_11300 PF00892 EamA-like transporter family FDN01_11305 PF00392 Bacterial regulatory proteins, gntR family FDN01_11305 PF00155 Aminotransferase class I and II FDN01_11310 PF01638 HxlR-like helix-turn-helix FDN01_11315 PF03454 MoeA C-terminal region (domain IV) FDN01_11315 PF00994 Probable molybdopterin binding domain FDN01_11315 PF03453 MoeA N-terminal region (domain I and II) FDN01_11320 PF00994 Probable molybdopterin binding domain FDN01_11320 PF01967 MoaC family FDN01_11325 PF02391 MoaE protein FDN01_11335 PF06463 Molybdenum Cofactor Synthesis C FDN01_11335 PF04055 Radical SAM superfamily FDN01_11340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDN01_11340 PF00384 Molybdopterin oxidoreductase FDN01_11340 PF01568 Molydopterin dinucleotide binding domain FDN01_11350 PF01568 Molydopterin dinucleotide binding domain FDN01_11350 PF00384 Molybdopterin oxidoreductase FDN01_11350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDN01_11350 PF04324 BFD-like [2Fe-2S] binding domain FDN01_11360 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_11360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDN01_11360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDN01_11360 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDN01_11360 PF04324 BFD-like [2Fe-2S] binding domain FDN01_11360 PF13806 Rieske-like [2Fe-2S] domain FDN01_11370 PF00072 Response regulator receiver domain FDN01_11370 PF00486 Transcriptional regulatory protein, C terminal FDN01_11375 PF00005 ABC transporter FDN01_11385 PF11799 impB/mucB/samB family C-terminal domain FDN01_11385 PF00817 impB/mucB/samB family FDN01_11385 PF13438 Domain of unknown function (DUF4113) FDN01_11390 PF01220 Dehydroquinase class II FDN01_11395 PF00364 Biotin-requiring enzyme FDN01_11400 PF00289 Biotin carboxylase, N-terminal domain FDN01_11400 PF02785 Biotin carboxylase C-terminal domain FDN01_11400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDN01_11410 PF12832 MFS_1 like family FDN01_11430 PF01645 Conserved region in glutamate synthase FDN01_11450 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDN01_11460 PF00465 Iron-containing alcohol dehydrogenase FDN01_11465 PF03061 Thioesterase superfamily FDN01_11470 PF05506 Domain of unknown function (DUF756) FDN01_11470 PF04185 Phosphoesterase family FDN01_11475 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FDN01_11475 PF12169 DNA polymerase III subunits gamma and tau domain III FDN01_11475 PF12170 DNA polymerase III tau subunit V interacting with alpha FDN01_11480 PF07690 Major Facilitator Superfamily FDN01_11505 PF02803 Thiolase, C-terminal domain FDN01_11505 PF00108 Thiolase, N-terminal domain FDN01_11525 PF01810 LysE type translocator FDN01_11530 PF01037 Lrp/AsnC ligand binding domain FDN01_11535 PF03594 Benzoate membrane transport protein FDN01_11540 PF02308 MgtC family FDN01_11545 PF00689 Cation transporting ATPase, C-terminus FDN01_11545 PF00690 Cation transporter/ATPase, N-terminus FDN01_11560 PF00582 Universal stress protein family FDN01_11565 PF00005 ABC transporter FDN01_11565 PF12848 ABC transporter FDN01_11585 PF07715 TonB-dependent Receptor Plug Domain FDN01_11585 PF00593 TonB dependent receptor FDN01_11620 PF00924 Mechanosensitive ion channel FDN01_11625 PF07715 TonB-dependent Receptor Plug Domain FDN01_11625 PF00593 TonB dependent receptor FDN01_11630 PF00440 Bacterial regulatory proteins, tetR family FDN01_11645 PF01037 Lrp/AsnC ligand binding domain FDN01_11650 PF01817 Chorismate mutase type II FDN01_11660 PF00106 short chain dehydrogenase FDN01_11670 PF01433 Peptidase family M1 domain FDN01_11670 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FDN01_11670 PF11940 Domain of unknown function (DUF3458) Ig-like fold FDN01_11685 PF02110 Hydroxyethylthiazole kinase family FDN01_11690 PF06445 GyrI-like small molecule binding domain FDN01_11700 PF14493 Helix-turn-helix domain FDN01_11700 PF05970 PIF1-like helicase FDN01_11705 PF00465 Iron-containing alcohol dehydrogenase FDN01_11720 PF00171 Aldehyde dehydrogenase family FDN01_11725 PF13520 Amino acid permease FDN01_11730 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FDN01_11735 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FDN01_11740 PF02540 NAD synthase FDN01_11740 PF00958 GMP synthase C terminal domain FDN01_11740 PF00117 Glutamine amidotransferase class-I FDN01_11745 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FDN01_11745 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDN01_11750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDN01_11755 PF00149 Calcineurin-like phosphoesterase FDN01_11765 PF00881 Nitroreductase family FDN01_11775 PF17209 Hfq protein FDN01_11785 PF08676 MutL C terminal dimerisation domain FDN01_11785 PF01119 DNA mismatch repair protein, C-terminal domain FDN01_11790 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FDN01_11795 PF00849 RNA pseudouridylate synthase FDN01_11795 PF01479 S4 domain FDN01_11810 PF01479 S4 domain FDN01_11810 PF00849 RNA pseudouridylate synthase FDN01_11820 PF04284 Protein of unknown function (DUF441) FDN01_11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_11825 PF03466 LysR substrate binding domain FDN01_11840 PF07690 Major Facilitator Superfamily FDN01_11845 PF00027 Cyclic nucleotide-binding domain FDN01_11845 PF00520 Ion transport protein FDN01_11875 PF01103 Surface antigen FDN01_11875 PF07244 Surface antigen variable number repeat FDN01_11875 PF17243 POTRA domain TamA domain 1 FDN01_11880 PF07690 Major Facilitator Superfamily FDN01_11885 PF03232 Ubiquinone biosynthesis protein COQ7 FDN01_11895 PF00120 Glutamine synthetase, catalytic domain FDN01_11900 PF00072 Response regulator receiver domain FDN01_11900 PF00486 Transcriptional regulatory protein, C terminal FDN01_11905 PF13493 Domain of unknown function (DUF4118) FDN01_11905 PF02702 Osmosensitive K+ channel His kinase sensor domain FDN01_11905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_11905 PF00512 His Kinase A (phospho-acceptor) domain FDN01_11910 PF02669 K+-transporting ATPase, c chain FDN01_11920 PF03814 Potassium-transporting ATPase A subunit FDN01_11935 PF03109 ABC1 family FDN01_11940 PF00899 ThiF family FDN01_11945 PF01613 Flavin reductase like domain FDN01_11950 PF00501 AMP-binding enzyme FDN01_11950 PF13193 AMP-binding enzyme C-terminal domain FDN01_11955 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_11955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_11955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_11960 PF00106 short chain dehydrogenase FDN01_11965 PF12833 Helix-turn-helix domain FDN01_11970 PF09084 NMT1/THI5 like FDN01_11975 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_11980 PF17827 PrmC N-terminal domain FDN01_11980 PF13847 Methyltransferase domain FDN01_11985 PF03462 PCRF domain FDN01_11985 PF00472 RF-1 domain FDN01_11995 PF03466 LysR substrate binding domain FDN01_11995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_12015 PF00296 Luciferase-like monooxygenase FDN01_12025 PF13994 PgaD-like protein FDN01_12030 PF00535 Glycosyl transferase family 2 FDN01_12035 PF01522 Polysaccharide deacetylase FDN01_12035 PF14883 Hypothetical glycosyl hydrolase family 13 FDN01_12045 PF03618 Kinase/pyrophosphorylase FDN01_12050 PF00391 PEP-utilising enzyme, mobile domain FDN01_12050 PF02896 PEP-utilising enzyme, TIM barrel domain FDN01_12050 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FDN01_12060 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FDN01_12060 PF06481 COX Aromatic Rich Motif FDN01_12065 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDN01_12070 PF00510 Cytochrome c oxidase subunit III FDN01_12080 PF01040 UbiA prenyltransferase family FDN01_12085 PF01250 Ribosomal protein S6 FDN01_12090 PF01084 Ribosomal protein S18 FDN01_12095 PF03948 Ribosomal protein L9, C-terminal domain FDN01_12095 PF01281 Ribosomal protein L9, N-terminal domain FDN01_12100 PF03796 DnaB-like helicase C terminal domain FDN01_12100 PF00772 DnaB-like helicase N terminal domain FDN01_12105 PF00842 Alanine racemase, C-terminal domain FDN01_12105 PF01168 Alanine racemase, N-terminal domain FDN01_12115 PF01841 Transglutaminase-like superfamily FDN01_12115 PF08379 Bacterial transglutaminase-like N-terminal region FDN01_12125 PF14403 Circularly permuted ATP-grasp type 2 FDN01_12135 PF01134 Glucose inhibited division protein A FDN01_12135 PF13932 GidA associated domain FDN01_12155 PF02954 Bacterial regulatory protein, Fis family FDN01_12160 PF02142 MGS-like domain FDN01_12160 PF01808 AICARFT/IMPCHase bienzyme FDN01_12165 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FDN01_12165 PF02843 Phosphoribosylglycinamide synthetase, C domain FDN01_12165 PF02844 Phosphoribosylglycinamide synthetase, N domain FDN01_12170 PF03180 NLPA lipoprotein FDN01_12175 PF00005 ABC transporter FDN01_12175 PF09383 NIL domain FDN01_12180 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_12185 PF16123 Hydroxyacylglutathione hydrolase C-terminus FDN01_12185 PF00753 Metallo-beta-lactamase superfamily FDN01_12195 PF00375 Sodium:dicarboxylate symporter family FDN01_12235 PF03050 Transposase IS66 family FDN01_12235 PF13817 IS66 C-terminal element FDN01_12235 PF13007 Transposase C of IS166 homeodomain FDN01_12235 PF13005 zinc-finger binding domain of transposase IS66 FDN01_12245 PF01636 Phosphotransferase enzyme family FDN01_12270 PF07091 Ribosomal RNA methyltransferase (FmrO) FDN01_12295 PF00809 Pterin binding enzyme FDN01_12300 PF00893 Small Multidrug Resistance protein FDN01_12305 PF13427 Domain of unknown function (DUF4111) FDN01_12305 PF01909 Nucleotidyltransferase domain FDN01_12310 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_12320 PF00589 Phage integrase family FDN01_12320 PF13495 Phage integrase, N-terminal SAM-like domain FDN01_12325 PF13610 DDE domain FDN01_12330 PF01636 Phosphotransferase enzyme family FDN01_12340 PF13610 DDE domain FDN01_12350 PF16671 Actin cross-linking domain FDN01_12350 PF04717 Type VI secretion system, phage-baseplate injector FDN01_12365 PF03180 NLPA lipoprotein FDN01_12370 PF05987 Bacterial protein of unknown function (DUF898) FDN01_12385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN01_12385 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_12390 PF00764 Arginosuccinate synthase FDN01_12395 PF00360 Phytochrome region FDN01_12395 PF01590 GAF domain FDN01_12395 PF00990 Diguanylate cyclase, GGDEF domain FDN01_12395 PF00563 EAL domain FDN01_12400 PF01979 Amidohydrolase family FDN01_12405 PF00929 Exonuclease FDN01_12415 PF07715 TonB-dependent Receptor Plug Domain FDN01_12415 PF00593 TonB dependent receptor FDN01_12420 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_12420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDN01_12425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDN01_12425 PF00005 ABC transporter FDN01_12430 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_12430 PF12911 N-terminal TM domain of oligopeptide transport permease C FDN01_12435 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_12440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDN01_12445 PF01464 Transglycosylase SLT domain FDN01_12445 PF01476 LysM domain FDN01_12445 PF01476 LysM domain FDN01_12445 PF01464 Transglycosylase SLT domain FDN01_12450 PF00929 Exonuclease FDN01_12460 PF09297 NADH pyrophosphatase zinc ribbon domain FDN01_12460 PF00293 NUDIX domain FDN01_12470 PF04972 BON domain FDN01_12475 PF02021 Uncharacterised protein family UPF0102 FDN01_12480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDN01_12490 PF03466 LysR substrate binding domain FDN01_12490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_12495 PF01810 LysE type translocator FDN01_12505 PF13411 MerR HTH family regulatory protein FDN01_12515 PF01494 FAD binding domain FDN01_12520 PF01494 FAD binding domain FDN01_12525 PF00557 Metallopeptidase family M24 FDN01_12525 PF05195 Aminopeptidase P, N-terminal domain FDN01_12560 PF08019 Phosphoethanolamine transferase EptA/EptB FDN01_12560 PF00884 Sulfatase FDN01_12605 PF01551 Peptidase family M23 FDN01_12605 PF08525 Opacity-associated protein A N-terminal motif FDN01_12605 PF01476 LysM domain FDN01_12930 PF01812 5-formyltetrahydrofolate cyclo-ligase family FDN01_12940 PF13018 Extended Signal Peptide of Type V secretion system FDN01_12940 PF03895 YadA-like membrane anchor domain FDN01_12940 PF05658 Head domain of trimeric autotransporter adhesin FDN01_12940 PF05662 Coiled stalk of trimeric autotransporter adhesin FDN01_12945 PF02190 ATP-dependent protease La (LON) substrate-binding domain FDN01_12945 PF00004 ATPase family associated with various cellular activities (AAA) FDN01_12945 PF05362 Lon protease (S16) C-terminal proteolytic domain FDN01_12950 PF02590 Predicted SPOUT methyltransferase FDN01_12955 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FDN01_12965 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDN01_12965 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDN01_12970 PF04060 Putative Fe-S cluster FDN01_12975 PF10576 Iron-sulfur binding domain of endonuclease III FDN01_12975 PF00633 Helix-hairpin-helix motif FDN01_12975 PF00730 HhH-GPD superfamily base excision DNA repair protein FDN01_12985 PF05191 Adenylate kinase, active site lid FDN01_13000 PF03717 Penicillin-binding Protein dimerisation domain FDN01_13000 PF00905 Penicillin binding protein transpeptidase domain FDN01_13015 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDN01_13020 PF01730 UreF FDN01_13025 PF05194 UreE urease accessory protein, C-terminal domain FDN01_13025 PF02814 UreE urease accessory protein, N-terminal domain FDN01_13030 PF00449 Urease alpha-subunit, N-terminal domain FDN01_13030 PF01979 Amidohydrolase family FDN01_13035 PF00699 Urease beta subunit FDN01_13040 PF00547 Urease, gamma subunit FDN01_13045 PF01774 UreD urease accessory protein FDN01_13060 PF00463 Isocitrate lyase family FDN01_13065 PF03466 LysR substrate binding domain FDN01_13065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_13070 PF01595 Cyclin M transmembrane N-terminal domain FDN01_13070 PF00571 CBS domain FDN01_13070 PF03471 Transporter associated domain FDN01_13080 PF03600 Citrate transporter FDN01_13095 PF00009 Elongation factor Tu GTP binding domain FDN01_13100 PF01507 Phosphoadenosine phosphosulfate reductase family FDN01_13110 PF14052 Capsule assembly protein Wzi FDN01_13115 PF01336 OB-fold nucleic acid binding domain FDN01_13115 PF00152 tRNA synthetases class II (D, K and N) FDN01_13130 PF00301 Rubredoxin FDN01_13135 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_13135 PF18113 Rubredoxin binding C-terminal domain FDN01_13140 PF00561 alpha/beta hydrolase fold FDN01_13145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_13145 PF03466 LysR substrate binding domain FDN01_13155 PF13089 Polyphosphate kinase N-terminal domain FDN01_13155 PF13090 Polyphosphate kinase C-terminal domain 2 FDN01_13155 PF17941 Polyphosphate kinase C-terminal domain 1 FDN01_13155 PF02503 Polyphosphate kinase middle domain FDN01_13160 PF00912 Transglycosylase FDN01_13165 PF01694 Rhomboid family FDN01_13175 PF00005 ABC transporter FDN01_13180 PF13472 GDSL-like Lipase/Acylhydrolase family FDN01_13185 PF00484 Carbonic anhydrase FDN01_13190 PF00561 alpha/beta hydrolase fold FDN01_13200 PF00593 TonB dependent receptor FDN01_13200 PF07715 TonB-dependent Receptor Plug Domain FDN01_13205 PF01106 NifU-like domain FDN01_13205 PF01521 Iron-sulphur cluster biosynthesis FDN01_13215 PF00884 Sulfatase FDN01_13220 PF03781 Sulfatase-modifying factor enzyme 1 FDN01_13235 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_13240 PF01384 Phosphate transporter family FDN01_13245 PF02965 Vitamin B12 dependent methionine synthase, activation domain FDN01_13245 PF00809 Pterin binding enzyme FDN01_13245 PF02574 Homocysteine S-methyltransferase FDN01_13245 PF02310 B12 binding domain FDN01_13245 PF02607 B12 binding domain FDN01_13250 PF02779 Transketolase, pyrimidine binding domain FDN01_13250 PF02780 Transketolase, C-terminal domain FDN01_13255 PF00456 Transketolase, thiamine diphosphate binding domain FDN01_13260 PF07690 Major Facilitator Superfamily FDN01_13270 PF03466 LysR substrate binding domain FDN01_13270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_13285 PF01263 Aldose 1-epimerase FDN01_13290 PF07690 Major Facilitator Superfamily FDN01_13295 PF02311 AraC-like ligand binding domain FDN01_13295 PF12833 Helix-turn-helix domain FDN01_13300 PF04960 Glutaminase FDN01_13305 PF01327 Polypeptide deformylase FDN01_13310 PF07690 Major Facilitator Superfamily FDN01_13320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDN01_13320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDN01_13320 PF00205 Thiamine pyrophosphate enzyme, central domain FDN01_13325 PF00171 Aldehyde dehydrogenase family FDN01_13330 PF01958 Domain of unknown function DUF108 FDN01_13330 PF03447 Homoserine dehydrogenase, NAD binding domain FDN01_13340 PF12697 Alpha/beta hydrolase family FDN01_13350 PF07690 Major Facilitator Superfamily FDN01_13355 PF14759 Reductase C-terminal FDN01_13355 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_13360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDN01_13370 PF00355 Rieske [2Fe-2S] domain FDN01_13380 PF00355 Rieske [2Fe-2S] domain FDN01_13385 PF09339 IclR helix-turn-helix domain FDN01_13385 PF01614 Bacterial transcriptional regulator FDN01_13400 PF00378 Enoyl-CoA hydratase/isomerase FDN01_13410 PF00535 Glycosyl transferase family 2 FDN01_13415 PF01522 Polysaccharide deacetylase FDN01_13415 PF14883 Hypothetical glycosyl hydrolase family 13 FDN01_13420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN01_13425 PF07152 YaeQ protein FDN01_13430 PF00375 Sodium:dicarboxylate symporter family FDN01_13435 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDN01_13435 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDN01_13445 PF03061 Thioesterase superfamily FDN01_13455 PF02028 BCCT, betaine/carnitine/choline family transporter FDN01_13460 PF02028 BCCT, betaine/carnitine/choline family transporter FDN01_13465 PF13977 BetI-type transcriptional repressor, C-terminal FDN01_13465 PF00440 Bacterial regulatory proteins, tetR family FDN01_13470 PF00171 Aldehyde dehydrogenase family FDN01_13475 PF00732 GMC oxidoreductase FDN01_13475 PF05199 GMC oxidoreductase FDN01_13480 PF06039 Malate:quinone oxidoreductase (Mqo) FDN01_13490 PF02574 Homocysteine S-methyltransferase FDN01_13495 PF13520 Amino acid permease FDN01_13520 PF01126 Heme oxygenase FDN01_13550 PF04542 Sigma-70 region 2 FDN01_13550 PF08281 Sigma-70, region 4 FDN01_13560 PF00701 Dihydrodipicolinate synthetase family FDN01_13565 PF00083 Sugar (and other) transporter FDN01_13585 PF01026 TatD related DNase FDN01_13600 PF07693 KAP family P-loop domain FDN01_13685 PF02768 DNA polymerase III beta subunit, C-terminal domain FDN01_13685 PF00712 DNA polymerase III beta subunit, N-terminal domain FDN01_13685 PF02767 DNA polymerase III beta subunit, central domain FDN01_13725 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FDN01_13875 PF07007 Lysozyme inhibitor LprI FDN01_13920 PF01695 IstB-like ATP binding protein FDN01_13930 PF00145 C-5 cytosine-specific DNA methylase FDN01_13975 PF00717 Peptidase S24-like FDN01_13975 PF01381 Helix-turn-helix FDN01_14010 PF00929 Exonuclease FDN01_14080 PF07690 Major Facilitator Superfamily FDN01_14085 PF13533 Biotin-lipoyl like FDN01_14090 PF03061 Thioesterase superfamily FDN01_14095 PF00490 Delta-aminolevulinic acid dehydratase FDN01_14100 PF01266 FAD dependent oxidoreductase FDN01_14105 PF01370 NAD dependent epimerase/dehydratase family FDN01_14105 PF08338 Domain of unknown function (DUF1731) FDN01_14125 PF12320 Type 5 capsule protein repressor C-terminal domain FDN01_14125 PF00149 Calcineurin-like phosphoesterase FDN01_14135 PF01168 Alanine racemase, N-terminal domain FDN01_14140 PF00437 Type II/IV secretion system protein FDN01_14145 PF00437 Type II/IV secretion system protein FDN01_14150 PF01475 Ferric uptake regulator family FDN01_14155 PF04355 SmpA / OmlA family FDN01_14160 PF03658 RnfH family Ubiquitin FDN01_14175 PF01814 Hemerythrin HHE cation binding domain FDN01_14180 PF13230 Glutamine amidotransferases class-II FDN01_14190 PF00696 Amino acid kinase family FDN01_14195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDN01_14195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDN01_14195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDN01_14195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDN01_14200 PF00692 dUTPase FDN01_14205 PF13361 UvrD-like helicase C-terminal domain FDN01_14205 PF00580 UvrD/REP helicase N-terminal domain FDN01_14210 PF13488 Glycine zipper FDN01_14210 PF00691 OmpA family FDN01_14215 PF01553 Acyltransferase FDN01_14225 PF03775 Septum formation inhibitor MinC, C-terminal domain FDN01_14230 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FDN01_14235 PF03776 Septum formation topological specificity factor MinE FDN01_14250 PF01810 LysE type translocator FDN01_14255 PF17854 FtsK alpha domain FDN01_14255 PF01580 FtsK/SpoIIIE family FDN01_14255 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FDN01_14255 PF09397 Ftsk gamma domain FDN01_14260 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDN01_14265 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FDN01_14270 PF04376 Arginine-tRNA-protein transferase, N terminus FDN01_14270 PF04377 Arginine-tRNA-protein transferase, C terminus FDN01_14275 PF00583 Acetyltransferase (GNAT) family FDN01_14290 PF03143 Elongation factor Tu C-terminal domain FDN01_14290 PF00009 Elongation factor Tu GTP binding domain FDN01_14290 PF03144 Elongation factor Tu domain 2 FDN01_14295 PF14492 Elongation Factor G, domain II FDN01_14295 PF00679 Elongation factor G C-terminus FDN01_14295 PF00009 Elongation factor Tu GTP binding domain FDN01_14295 PF03144 Elongation factor Tu domain 2 FDN01_14295 PF03764 Elongation factor G, domain IV FDN01_14300 PF00177 Ribosomal protein S7p/S5e FDN01_14305 PF00164 Ribosomal protein S12/S23 FDN01_14315 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN01_14315 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN01_14325 PF05726 Pirin C-terminal cupin domain FDN01_14325 PF02678 Pirin FDN01_14335 PF00795 Carbon-nitrogen hydrolase FDN01_14335 PF02540 NAD synthase FDN01_14350 PF00111 2Fe-2S iron-sulfur cluster binding domain FDN01_14350 PF00970 Oxidoreductase FAD-binding domain FDN01_14350 PF00175 Oxidoreductase NAD-binding domain FDN01_14355 PF00171 Aldehyde dehydrogenase family FDN01_14360 PF00355 Rieske [2Fe-2S] domain FDN01_14360 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDN01_14365 PF07859 alpha/beta hydrolase fold FDN01_14370 PF02028 BCCT, betaine/carnitine/choline family transporter FDN01_14375 PF00180 Isocitrate/isopropylmalate dehydrogenase FDN01_14380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_14380 PF03466 LysR substrate binding domain FDN01_14400 PF00037 4Fe-4S binding domain FDN01_14405 PF01467 Cytidylyltransferase-like FDN01_14410 PF01668 SmpB protein FDN01_14415 PF03358 NADPH-dependent FMN reductase FDN01_14425 PF01479 S4 domain FDN01_14425 PF00849 RNA pseudouridylate synthase FDN01_14430 PF13525 Outer membrane lipoprotein FDN01_14435 PF01807 CHC2 zinc finger FDN01_14435 PF08275 DNA primase catalytic core, N-terminal domain FDN01_14435 PF10410 DnaB-helicase binding domain of primase FDN01_14435 PF08278 DNA primase DnaG DnaB-binding FDN01_14440 PF01488 Shikimate / quinate 5-dehydrogenase FDN01_14440 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FDN01_14440 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FDN01_14450 PF03550 Outer membrane lipoprotein LolB FDN01_14455 PF08544 GHMP kinases C terminal FDN01_14455 PF00288 GHMP kinases N terminal domain FDN01_14465 PF14572 Phosphoribosyl synthetase-associated domain FDN01_14465 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDN01_14470 PF01386 Ribosomal L25p family FDN01_14475 PF01195 Peptidyl-tRNA hydrolase FDN01_14480 PF02261 Aspartate decarboxylase FDN01_14495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDN01_14505 PF08543 Phosphomethylpyrimidine kinase FDN01_14505 PF03070 TENA/THI-4/PQQC family FDN01_14505 PF02581 Thiamine monophosphate synthase FDN01_14510 PF01476 LysM domain FDN01_14510 PF04972 BON domain FDN01_14515 PF00550 Phosphopantetheine attachment site FDN01_14525 PF00698 Acyl transferase domain FDN01_14530 PF01783 Ribosomal L32p protein family FDN01_14535 PF02620 Large ribosomal RNA subunit accumulation protein YceD FDN01_14540 PF04315 Elongation factor P hydroxylase FDN01_14545 PF01300 Telomere recombination FDN01_14550 PF02616 Segregation and condensation protein ScpA FDN01_14555 PF04079 Segregation and condensation complex subunit ScpB FDN01_14560 PF00849 RNA pseudouridylate synthase FDN01_14560 PF01479 S4 domain FDN01_14575 PF00155 Aminotransferase class I and II FDN01_14580 PF04055 Radical SAM superfamily FDN01_14580 PF06968 Biotin and Thiamin Synthesis associated domain FDN01_14580 PF00202 Aminotransferase class-III FDN01_14585 PF12697 Alpha/beta hydrolase family FDN01_14585 PF08241 Methyltransferase domain FDN01_14590 PF02358 Trehalose-phosphatase FDN01_14595 PF00982 Glycosyltransferase family 20 FDN01_14600 PF07690 Major Facilitator Superfamily FDN01_14605 PF00210 Ferritin-like domain FDN01_14610 PF00533 BRCA1 C Terminus (BRCT) domain FDN01_14610 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FDN01_14610 PF03120 NAD-dependent DNA ligase OB-fold domain FDN01_14610 PF12826 Helix-hairpin-helix motif FDN01_14610 PF01653 NAD-dependent DNA ligase adenylation domain FDN01_14620 PF06470 SMC proteins Flexible Hinge Domain FDN01_14620 PF02463 RecF/RecN/SMC N terminal domain FDN01_14630 PF01925 Sulfite exporter TauE/SafE FDN01_14640 PF03309 Type III pantothenate kinase FDN01_14645 PF02881 SRP54-type protein, helical bundle domain FDN01_14645 PF00448 SRP54-type protein, GTPase domain FDN01_14645 PF02978 Signal peptide binding domain FDN01_14655 PF01207 Dihydrouridine synthase (Dus) FDN01_14690 PF00692 dUTPase FDN01_14705 PF01048 Phosphorylase superfamily FDN01_14715 PF10609 NUBPL iron-transfer P-loop NTPase FDN01_14725 PF01588 Putative tRNA binding domain FDN01_14725 PF09334 tRNA synthetases class I (M) FDN01_14750 PF13533 Biotin-lipoyl like FDN01_14755 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_14770 PF05552 Conserved TM helix FDN01_14785 PF00970 Oxidoreductase FAD-binding domain FDN01_14785 PF00175 Oxidoreductase NAD-binding domain FDN01_14790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_14790 PF03466 LysR substrate binding domain FDN01_14795 PF00313 'Cold-shock' DNA-binding domain FDN01_14805 PF00361 Proton-conducting membrane transporter FDN01_14810 PF00361 Proton-conducting membrane transporter FDN01_14815 PF00361 Proton-conducting membrane transporter FDN01_14815 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDN01_14820 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDN01_14825 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FDN01_14830 PF12838 4Fe-4S dicluster domain FDN01_14835 PF00146 NADH dehydrogenase FDN01_14840 PF00384 Molybdopterin oxidoreductase FDN01_14840 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FDN01_14840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDN01_14845 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FDN01_14845 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FDN01_14845 PF10531 SLBB domain FDN01_14860 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FDN01_14865 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FDN01_14870 PF00990 Diguanylate cyclase, GGDEF domain FDN01_14870 PF17151 Periplasmic sensor domain FDN01_14880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_14880 PF00672 HAMP domain FDN01_14880 PF00512 His Kinase A (phospho-acceptor) domain FDN01_14885 PF00486 Transcriptional regulatory protein, C terminal FDN01_14885 PF00072 Response regulator receiver domain FDN01_14895 PF03477 ATP cone domain FDN01_14895 PF00317 Ribonucleotide reductase, all-alpha domain FDN01_14895 PF02867 Ribonucleotide reductase, barrel domain FDN01_14905 PF00268 Ribonucleotide reductase, small chain FDN01_14915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_14915 PF00512 His Kinase A (phospho-acceptor) domain FDN01_14915 PF13756 Stimulus-sensing domain FDN01_14915 PF00672 HAMP domain FDN01_14915 PF13755 Sensor N-terminal transmembrane domain FDN01_14985 PF01011 PQQ enzyme repeat FDN01_14985 PF13360 PQQ-like domain FDN01_15005 PF02567 Phenazine biosynthesis-like protein FDN01_15035 PF01613 Flavin reductase like domain FDN01_15040 PF01717 Cobalamin-independent synthase, Catalytic domain FDN01_15040 PF08267 Cobalamin-independent synthase, N-terminal domain FDN01_15050 PF03466 LysR substrate binding domain FDN01_15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_15055 PF01810 LysE type translocator FDN01_15065 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDN01_15065 PF12833 Helix-turn-helix domain FDN01_15070 PF07687 Peptidase dimerisation domain FDN01_15070 PF01546 Peptidase family M20/M25/M40 FDN01_15080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_15080 PF03466 LysR substrate binding domain FDN01_15090 PF07690 Major Facilitator Superfamily FDN01_15100 PF03466 LysR substrate binding domain FDN01_15100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_15105 PF14537 Cytochrome c3 FDN01_15105 PF00890 FAD binding domain FDN01_15115 PF02515 CoA-transferase family III FDN01_15120 PF07690 Major Facilitator Superfamily FDN01_15125 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_15125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_15125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_15130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_15130 PF03466 LysR substrate binding domain FDN01_15135 PF00107 Zinc-binding dehydrogenase FDN01_15135 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_15140 PF00962 Adenosine/AMP deaminase FDN01_15165 PF02445 Quinolinate synthetase A protein FDN01_15170 PF01960 ArgJ family FDN01_15175 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDN01_15175 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDN01_15180 PF00893 Small Multidrug Resistance protein FDN01_15190 PF05275 Copper resistance protein B precursor (CopB) FDN01_15195 PF00394 Multicopper oxidase FDN01_15195 PF07731 Multicopper oxidase FDN01_15195 PF07732 Multicopper oxidase FDN01_15210 PF00834 Ribulose-phosphate 3 epimerase family FDN01_15220 PF00756 Putative esterase FDN01_15230 PF04445 Putative SAM-dependent methyltransferase FDN01_15235 PF00814 Glycoprotease family FDN01_15240 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_15245 PF00293 NUDIX domain FDN01_15285 PF04715 Anthranilate synthase component I, N terminal region FDN01_15285 PF00425 chorismate binding enzyme FDN01_15290 PF00155 Aminotransferase class I and II FDN01_15295 PF00815 Histidinol dehydrogenase FDN01_15300 PF01634 ATP phosphoribosyltransferase FDN01_15305 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDN01_15310 PF01722 BolA-like protein FDN01_15315 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FDN01_15320 PF04552 Sigma-54, DNA binding domain FDN01_15320 PF04963 Sigma-54 factor, core binding domain FDN01_15320 PF00309 Sigma-54 factor, Activator interacting domain (AID) FDN01_15365 PF00795 Carbon-nitrogen hydrolase FDN01_15375 PF01047 MarR family FDN01_15380 PF02566 OsmC-like protein FDN01_15385 PF00437 Type II/IV secretion system protein FDN01_15410 PF02325 YGGT family FDN01_15415 PF03807 NADP oxidoreductase coenzyme F420-dependent FDN01_15415 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDN01_15420 PF11734 TilS substrate C-terminal domain FDN01_15420 PF09179 TilS substrate binding domain FDN01_15420 PF01171 PP-loop family FDN01_15425 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FDN01_15430 PF02541 Ppx/GppA phosphatase family FDN01_15435 PF00085 Thioredoxin FDN01_15440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDN01_15440 PF07498 Rho termination factor, N-terminal domain FDN01_15440 PF07497 Rho termination factor, RNA-binding domain FDN01_15455 PF00216 Bacterial DNA-binding protein FDN01_15460 PF03147 Ferredoxin-fold anticodon binding domain FDN01_15460 PF03483 B3/4 domain FDN01_15460 PF01588 Putative tRNA binding domain FDN01_15460 PF03484 tRNA synthetase B5 domain FDN01_15460 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FDN01_15465 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FDN01_15465 PF01409 tRNA synthetases class II core domain (F) FDN01_15485 PF00453 Ribosomal protein L20 FDN01_15490 PF01632 Ribosomal protein L35 FDN01_15495 PF07690 Major Facilitator Superfamily FDN01_15500 PF09335 SNARE associated Golgi protein FDN01_15505 PF00043 Glutathione S-transferase, C-terminal domain FDN01_15505 PF02798 Glutathione S-transferase, N-terminal domain FDN01_15515 PF00707 Translation initiation factor IF-3, C-terminal domain FDN01_15515 PF05198 Translation initiation factor IF-3, N-terminal domain FDN01_15520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDN01_15520 PF02824 TGS domain FDN01_15520 PF03129 Anticodon binding domain FDN01_15520 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDN01_15525 PF13193 AMP-binding enzyme C-terminal domain FDN01_15525 PF00501 AMP-binding enzyme FDN01_15530 PF04751 Protein of unknown function (DUF615) FDN01_15535 PF00381 PTS HPr component phosphorylation site FDN01_15540 PF03668 P-loop ATPase protein family FDN01_15545 PF02569 Pantoate-beta-alanine ligase FDN01_15550 PF02548 Ketopantoate hydroxymethyltransferase FDN01_15555 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FDN01_15560 PF01743 Poly A polymerase head domain FDN01_15560 PF12626 Polymerase A arginine-rich C-terminus FDN01_15560 PF12627 Probable RNA and SrmB- binding site of polymerase A FDN01_15570 PF03819 MazG nucleotide pyrophosphohydrolase domain FDN01_15580 PF13291 ACT domain FDN01_15580 PF04607 Region found in RelA / SpoT proteins FDN01_15580 PF02824 TGS domain FDN01_15585 PF05958 tRNA (Uracil-5-)-methyltransferase FDN01_15595 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_15600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_15600 PF00672 HAMP domain FDN01_15600 PF01627 Hpt domain FDN01_15600 PF00072 Response regulator receiver domain FDN01_15600 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDN01_15600 PF00512 His Kinase A (phospho-acceptor) domain FDN01_15605 PF00378 Enoyl-CoA hydratase/isomerase FDN01_15610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDN01_15610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDN01_15615 PF01261 Xylose isomerase-like TIM barrel FDN01_15625 PF00106 short chain dehydrogenase FDN01_15630 PF02233 NAD(P) transhydrogenase beta subunit FDN01_15635 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FDN01_15640 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FDN01_15640 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FDN01_15645 PF00892 EamA-like transporter family FDN01_15655 PF07690 Major Facilitator Superfamily FDN01_15660 PF01207 Dihydrouridine synthase (Dus) FDN01_15670 PF03466 LysR substrate binding domain FDN01_15670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_15680 PF00899 ThiF family FDN01_15690 PF00330 Aconitase family (aconitate hydratase) FDN01_15690 PF00694 Aconitase C-terminal domain FDN01_15695 PF01026 TatD related DNase FDN01_15710 PF03144 Elongation factor Tu domain 2 FDN01_15710 PF00009 Elongation factor Tu GTP binding domain FDN01_15710 PF16658 Class II release factor RF3, C-terminal domain FDN01_15735 PF00563 EAL domain FDN01_15735 PF03707 Bacterial signalling protein N terminal repeat FDN01_15735 PF00990 Diguanylate cyclase, GGDEF domain FDN01_15740 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDN01_15740 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FDN01_15745 PF10369 Small subunit of acetolactate synthase FDN01_15750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDN01_15750 PF00205 Thiamine pyrophosphate enzyme, central domain FDN01_15750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDN01_15760 PF08264 Anticodon-binding domain of tRNA FDN01_15760 PF00133 tRNA synthetases class I (I, L, M and V) FDN01_15760 PF13603 Leucyl-tRNA synthetase, Domain 2 FDN01_15760 PF09334 tRNA synthetases class I (M) FDN01_15775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN01_15780 PF12704 MacB-like periplasmic core domain FDN01_15780 PF02687 FtsX-like permease family FDN01_15780 PF00005 ABC transporter FDN01_15785 PF02321 Outer membrane efflux protein FDN01_15800 PF00929 Exonuclease FDN01_15805 PF03193 RsgA GTPase FDN01_15815 PF00462 Glutaredoxin FDN01_15820 PF02556 Preprotein translocase subunit SecB FDN01_15835 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN01_15835 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN01_15850 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN01_15850 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN01_15860 PF04820 Tryptophan halogenase FDN01_15880 PF00221 Aromatic amino acid lyase FDN01_15895 PF13193 AMP-binding enzyme C-terminal domain FDN01_15895 PF00501 AMP-binding enzyme FDN01_15905 PF00550 Phosphopantetheine attachment site FDN01_15910 PF00550 Phosphopantetheine attachment site FDN01_15925 PF01926 50S ribosome-binding GTPase FDN01_15925 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FDN01_15930 PF13360 PQQ-like domain FDN01_15940 PF13393 Histidyl-tRNA synthetase FDN01_15940 PF03129 Anticodon binding domain FDN01_15945 PF04551 GcpE protein FDN01_15960 PF04055 Radical SAM superfamily FDN01_15965 PF00334 Nucleoside diphosphate kinase FDN01_15970 PF04384 Iron-sulphur cluster assembly FDN01_15975 PF01569 PAP2 superfamily FDN01_15980 PF00534 Glycosyl transferases group 1 FDN01_15980 PF13439 Glycosyltransferase Family 4 FDN01_15985 PF00595 PDZ domain FDN01_15985 PF03572 Peptidase family S41 FDN01_15985 PF17804 Tail specific protease N-terminal domain FDN01_15985 PF11818 C-terminal domain of tail specific protease (DUF3340) FDN01_15990 PF00933 Glycosyl hydrolase family 3 N terminal domain FDN01_16000 PF00561 alpha/beta hydrolase fold FDN01_16005 PF00171 Aldehyde dehydrogenase family FDN01_16010 PF00171 Aldehyde dehydrogenase family FDN01_16015 PF01202 Shikimate kinase FDN01_16020 PF02447 GntP family permease FDN01_16025 PF01081 KDPG and KHG aldolase FDN01_16030 PF00920 Dehydratase family FDN01_16040 PF01515 Phosphate acetyl/butaryl transferase FDN01_16040 PF07085 DRTGG domain FDN01_16045 PF05681 Fumarate hydratase (Fumerase) FDN01_16045 PF05683 Fumarase C-terminus FDN01_16060 PF06689 ClpX C4-type zinc finger FDN01_16060 PF07724 AAA domain (Cdc48 subfamily) FDN01_16060 PF10431 C-terminal, D2-small domain, of ClpB protein FDN01_16065 PF00574 Clp protease FDN01_16070 PF05697 Bacterial trigger factor protein (TF) FDN01_16070 PF05698 Bacterial trigger factor protein (TF) C-terminus FDN01_16070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN01_16080 PF13640 2OG-Fe(II) oxygenase superfamily FDN01_16080 PF18331 PKHD-type hydroxylase C-terminal domain FDN01_16085 PF08502 LeuA allosteric (dimerisation) domain FDN01_16085 PF00682 HMGL-like FDN01_16090 PF00561 alpha/beta hydrolase fold FDN01_16095 PF07021 Methionine biosynthesis protein MetW FDN01_16095 PF00561 alpha/beta hydrolase fold FDN01_16105 PF01725 Ham1 family FDN01_16115 PF02416 mttA/Hcf106 family FDN01_16120 PF02416 mttA/Hcf106 family FDN01_16125 PF00902 Sec-independent protein translocase protein (TatC) FDN01_16145 PF01790 Prolipoprotein diacylglyceryl transferase FDN01_16165 PF00186 Dihydrofolate reductase FDN01_16175 PF01625 Peptide methionine sulfoxide reductase FDN01_16185 PF01618 MotA/TolQ/ExbB proton channel family FDN01_16195 PF01842 ACT domain FDN01_16195 PF00551 Formyl transferase FDN01_16205 PF00171 Aldehyde dehydrogenase family FDN01_16210 PF00830 Ribosomal L28 family FDN01_16215 PF00471 Ribosomal protein L33 FDN01_16220 PF00999 Sodium/hydrogen exchanger family FDN01_16220 PF02254 TrkA-N domain FDN01_16240 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FDN01_16245 PF13361 UvrD-like helicase C-terminal domain FDN01_16245 PF00580 UvrD/REP helicase N-terminal domain FDN01_16260 PF01751 Toprim domain FDN01_16260 PF01396 Topoisomerase DNA binding C4 zinc finger FDN01_16260 PF08272 Topoisomerase I zinc-ribbon-like FDN01_16260 PF01131 DNA topoisomerase FDN01_16270 PF01638 HxlR-like helix-turn-helix FDN01_16275 PF00107 Zinc-binding dehydrogenase FDN01_16275 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_16290 PF01810 LysE type translocator FDN01_16295 PF03279 Bacterial lipid A biosynthesis acyltransferase FDN01_16305 PF00375 Sodium:dicarboxylate symporter family FDN01_16315 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDN01_16315 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDN01_16335 PF01416 tRNA pseudouridine synthase FDN01_16345 PF01176 Translation initiation factor 1A / IF-1 FDN01_16360 PF00180 Isocitrate/isopropylmalate dehydrogenase FDN01_16370 PF00694 Aconitase C-terminal domain FDN01_16375 PF00330 Aconitase family (aconitate hydratase) FDN01_16385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_16385 PF03466 LysR substrate binding domain FDN01_16405 PF00293 NUDIX domain FDN01_16415 PF00141 Peroxidase FDN01_16420 PF12706 Beta-lactamase superfamily domain FDN01_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_16425 PF03466 LysR substrate binding domain FDN01_16435 PF02798 Glutathione S-transferase, N-terminal domain FDN01_16440 PF13280 WYL domain FDN01_16440 PF08279 HTH domain FDN01_16445 PF13419 Haloacid dehalogenase-like hydrolase FDN01_16450 PF00849 RNA pseudouridylate synthase FDN01_16450 PF01479 S4 domain FDN01_16460 PF00575 S1 RNA binding domain FDN01_16460 PF10150 Ribonuclease E/G family FDN01_16460 PF12111 Polyribonucleotide phosphorylase C terminal FDN01_16465 PF13193 AMP-binding enzyme C-terminal domain FDN01_16465 PF00501 AMP-binding enzyme FDN01_16475 PF03466 LysR substrate binding domain FDN01_16475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_16480 PF00106 short chain dehydrogenase FDN01_16485 PF04055 Radical SAM superfamily FDN01_16485 PF06969 HemN C-terminal domain FDN01_16495 PF01554 MatE FDN01_16500 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_16500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_16500 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN01_16505 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FDN01_16505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_16510 PF03109 ABC1 family FDN01_16515 PF01197 Ribosomal protein L31 FDN01_16530 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FDN01_16550 PF03884 DNA gyrase inhibitor YacG FDN01_16555 PF00753 Metallo-beta-lactamase superfamily FDN01_16560 PF00762 Ferrochelatase FDN01_16570 PF01177 Asp/Glu/Hydantoin racemase FDN01_16585 PF01206 Sulfurtransferase TusA FDN01_16590 PF00571 CBS domain FDN01_16590 PF03471 Transporter associated domain FDN01_16595 PF00795 Carbon-nitrogen hydrolase FDN01_16600 PF01588 Putative tRNA binding domain FDN01_16610 PF08334 Type II secretion system (T2SS), protein G FDN01_16610 PF07963 Prokaryotic N-terminal methylation motif FDN01_16615 PF00482 Type II secretion system (T2SS), protein F FDN01_16620 PF00270 DEAD/DEAH box helicase FDN01_16620 PF17764 3′ DNA-binding domain (3′BD) FDN01_16620 PF18074 Primosomal protein N C-terminal domain FDN01_16620 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FDN01_16620 PF00271 Helicase conserved C-terminal domain FDN01_16625 PF00999 Sodium/hydrogen exchanger family FDN01_16625 PF02254 TrkA-N domain FDN01_16630 PF01430 Hsp33 protein FDN01_16640 PF00226 DnaJ domain FDN01_16640 PF01556 DnaJ C terminal domain FDN01_16650 PF01544 CorA-like Mg2+ transporter protein FDN01_16655 PF00013 KH domain FDN01_16655 PF03725 3' exoribonuclease family, domain 2 FDN01_16655 PF01138 3' exoribonuclease family, domain 1 FDN01_16655 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FDN01_16655 PF00575 S1 RNA binding domain FDN01_16660 PF00312 Ribosomal protein S15 FDN01_16670 PF13538 UvrD-like helicase C-terminal domain FDN01_16675 PF00580 UvrD/REP helicase N-terminal domain FDN01_16675 PF13361 UvrD-like helicase C-terminal domain FDN01_16675 PF12705 PD-(D/E)XK nuclease superfamily FDN01_16680 PF17946 RecC C-terminal domain FDN01_16690 PF03976 Polyphosphate kinase 2 (PPK2) FDN01_16700 PF01209 ubiE/COQ5 methyltransferase family FDN01_16710 PF03109 ABC1 family FDN01_16715 PF01494 FAD binding domain FDN01_16720 PF01502 Phosphoribosyl-AMP cyclohydrolase FDN01_16735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDN01_16735 PF00361 Proton-conducting membrane transporter FDN01_16735 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FDN01_16735 PF13244 Domain of unknown function (DUF4040) FDN01_16740 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDN01_16745 PF00361 Proton-conducting membrane transporter FDN01_16755 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FDN01_16765 PF02033 Ribosome-binding factor A FDN01_16770 PF11987 Translation-initiation factor 2 FDN01_16770 PF04760 Translation initiation factor IF-2, N-terminal region FDN01_16770 PF08364 Bacterial translation initiation factor IF-2 associated region FDN01_16770 PF00009 Elongation factor Tu GTP binding domain FDN01_16775 PF08529 NusA N-terminal domain FDN01_16775 PF13184 NusA-like KH domain FDN01_16775 PF00575 S1 RNA binding domain FDN01_16780 PF17384 RimP C-terminal SH3 domain FDN01_16780 PF02576 RimP N-terminal domain FDN01_16795 PF03840 Preprotein translocase SecG subunit FDN01_16800 PF00121 Triosephosphate isomerase FDN01_16805 PF00437 Type II/IV secretion system protein FDN01_16805 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDN01_16810 PF00482 Type II secretion system (T2SS), protein F FDN01_16815 PF01478 Type IV leader peptidase family FDN01_16815 PF06750 Bacterial Peptidase A24 N-terminal domain FDN01_16820 PF01121 Dephospho-CoA kinase FDN01_16830 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDN01_16830 PF00588 SpoU rRNA Methylase family FDN01_16835 PF06865 Pyrimidine/purine nucleoside phosphorylase FDN01_16845 PF02463 RecF/RecN/SMC N terminal domain FDN01_16850 PF02622 Uncharacterized ACR, COG1678 FDN01_16855 PF03652 Holliday junction resolvase FDN01_16860 PF13533 Biotin-lipoyl like FDN01_16885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDN01_16885 PF12833 Helix-turn-helix domain FDN01_16885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDN01_16885 PF02805 Metal binding domain of Ada FDN01_16890 PF01066 CDP-alcohol phosphatidyltransferase FDN01_16900 PF01541 GIY-YIG catalytic domain FDN01_16900 PF02151 UvrB/uvrC motif FDN01_16900 PF08459 UvrC Helix-hairpin-helix N-terminal FDN01_16925 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDN01_16925 PF00378 Enoyl-CoA hydratase/isomerase FDN01_16925 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDN01_16930 PF02803 Thiolase, C-terminal domain FDN01_16930 PF00108 Thiolase, N-terminal domain FDN01_16950 PF00376 MerR family regulatory protein FDN01_16950 PF09278 MerR, DNA binding FDN01_16960 PF01323 DSBA-like thioredoxin domain FDN01_16975 PF00183 Hsp90 protein FDN01_16975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_16990 PF13726 Na+-H+ antiporter family FDN01_16990 PF03553 Na+/H+ antiporter family FDN01_16995 PF00561 alpha/beta hydrolase fold FDN01_17015 PF05000 RNA polymerase Rpb1, domain 4 FDN01_17015 PF04997 RNA polymerase Rpb1, domain 1 FDN01_17015 PF00623 RNA polymerase Rpb1, domain 2 FDN01_17015 PF04998 RNA polymerase Rpb1, domain 5 FDN01_17015 PF04983 RNA polymerase Rpb1, domain 3 FDN01_17020 PF04560 RNA polymerase Rpb2, domain 7 FDN01_17020 PF00562 RNA polymerase Rpb2, domain 6 FDN01_17020 PF10385 RNA polymerase beta subunit external 1 domain FDN01_17020 PF04565 RNA polymerase Rpb2, domain 3 FDN01_17020 PF04561 RNA polymerase Rpb2, domain 2 FDN01_17020 PF04563 RNA polymerase beta subunit FDN01_17025 PF00542 Ribosomal protein L7/L12 C-terminal domain FDN01_17025 PF16320 Ribosomal protein L7/L12 dimerisation domain FDN01_17030 PF00466 Ribosomal protein L10 FDN01_17035 PF00687 Ribosomal protein L1p/L10e family FDN01_17040 PF03946 Ribosomal protein L11, N-terminal domain FDN01_17040 PF00298 Ribosomal protein L11, RNA binding domain FDN01_17045 PF02357 Transcription termination factor nusG FDN01_17045 PF00467 KOW motif FDN01_17050 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FDN01_17060 PF00009 Elongation factor Tu GTP binding domain FDN01_17060 PF03144 Elongation factor Tu domain 2 FDN01_17060 PF03143 Elongation factor Tu C-terminal domain FDN01_17085 PF04715 Anthranilate synthase component I, N terminal region FDN01_17085 PF00425 chorismate binding enzyme FDN01_17090 PF13419 Haloacid dehalogenase-like hydrolase FDN01_17095 PF00498 FHA domain FDN01_17095 PF12401 Protein of unknown function (DUF2662) FDN01_17100 PF03958 Bacterial type II/III secretion system short domain FDN01_17100 PF00263 Bacterial type II and III secretion system protein FDN01_17115 PF00816 H-NS histone family FDN01_17140 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FDN01_17140 PF03900 Porphobilinogen deaminase, C-terminal domain FDN01_17145 PF00072 Response regulator receiver domain FDN01_17145 PF04397 LytTr DNA-binding domain FDN01_17150 PF07694 5TMR of 5TMR-LYT FDN01_17150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_17150 PF06580 Histidine kinase FDN01_17155 PF00206 Lyase FDN01_17155 PF14698 Argininosuccinate lyase C-terminal FDN01_17160 PF04362 Bacterial Fe(2+) trafficking FDN01_17165 PF01895 PhoU domain FDN01_17170 PF02321 Outer membrane efflux protein FDN01_17175 PF00892 EamA-like transporter family FDN01_17190 PF13667 ThiC-associated domain FDN01_17190 PF01964 Radical SAM ThiC family FDN01_17195 PF00293 NUDIX domain FDN01_17200 PF00149 Calcineurin-like phosphoesterase FDN01_17205 PF01258 Prokaryotic dksA/traR C4-type zinc finger FDN01_17210 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDN01_17215 PF01098 Cell cycle protein FDN01_17220 PF02875 Mur ligase family, glutamate ligase domain FDN01_17220 PF08245 Mur ligase middle domain FDN01_17230 PF07670 Nucleoside recognition FDN01_17230 PF02421 Ferrous iron transport protein B FDN01_17230 PF07664 Ferrous iron transport protein B C terminus FDN01_17240 PF00589 Phage integrase family FDN01_17240 PF02899 Phage integrase, N-terminal SAM-like domain FDN01_17245 PF10411 Disulfide bond isomerase protein N-terminus FDN01_17245 PF13098 Thioredoxin-like domain FDN01_17250 PF03447 Homoserine dehydrogenase, NAD binding domain FDN01_17250 PF00742 Homoserine dehydrogenase FDN01_17250 PF01842 ACT domain FDN01_17255 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_17260 PF00768 D-alanyl-D-alanine carboxypeptidase FDN01_17265 PF00072 Response regulator receiver domain FDN01_17265 PF00196 Bacterial regulatory proteins, luxR family FDN01_17270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_17270 PF00512 His Kinase A (phospho-acceptor) domain FDN01_17275 PF00072 Response regulator receiver domain FDN01_17275 PF02954 Bacterial regulatory protein, Fis family FDN01_17275 PF00158 Sigma-54 interaction domain FDN01_17280 PF00595 PDZ domain FDN01_17280 PF03572 Peptidase family S41 FDN01_17285 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FDN01_17285 PF01676 Metalloenzyme superfamily FDN01_17290 PF03739 Lipopolysaccharide export system permease LptF/LptG FDN01_17300 PF00883 Cytosol aminopeptidase family, catalytic domain FDN01_17300 PF02789 Cytosol aminopeptidase family, N-terminal domain FDN01_17320 PF00677 Lumazine binding domain FDN01_17330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDN01_17330 PF01872 RibD C-terminal domain FDN01_17335 PF03477 ATP cone domain FDN01_17340 PF00909 Ammonium Transporter Family FDN01_17345 PF00543 Nitrogen regulatory protein P-II FDN01_17355 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDN01_17355 PF01078 Magnesium chelatase, subunit ChlI FDN01_17365 PF01636 Phosphotransferase enzyme family FDN01_17370 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase FDN01_17390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDN01_17390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDN01_17390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDN01_17390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDN01_17395 PF00809 Pterin binding enzyme FDN01_17410 PF13614 AAA domain FDN01_17415 PF02195 ParB-like nuclease domain FDN01_17415 PF08535 KorB domain FDN01_17415 PF06613 KorB C-terminal beta-barrel domain FDN01_17475 PF13610 DDE domain FDN01_17480 PF00589 Phage integrase family FDN01_17480 PF13495 Phage integrase, N-terminal SAM-like domain FDN01_17490 PF07690 Major Facilitator Superfamily FDN01_17500 PF00893 Small Multidrug Resistance protein FDN01_17505 PF00809 Pterin binding enzyme FDN01_17530 PF07091 Ribosomal RNA methyltransferase (FmrO) FDN01_17555 PF01636 Phosphotransferase enzyme family FDN01_17570 PF13610 DDE domain FDN01_17580 PF00239 Resolvase, N terminal domain FDN01_17580 PF02796 Helix-turn-helix domain of resolvase FDN01_17605 PF00440 Bacterial regulatory proteins, tetR family FDN01_17605 PF02909 Tetracyclin repressor-like, C-terminal domain FDN01_17610 PF07690 Major Facilitator Superfamily FDN01_17625 PF00905 Penicillin binding protein transpeptidase domain FDN01_17660 PF00665 Integrase core domain FDN01_17685 PF02899 Phage integrase, N-terminal SAM-like domain FDN01_17685 PF00589 Phage integrase family FDN01_17715 PF01740 STAS domain FDN01_17715 PF00916 Sulfate permease family FDN01_17720 PF00582 Universal stress protein family FDN01_17740 PF00665 Integrase core domain FDN01_17750 PF01078 Magnesium chelatase, subunit ChlI FDN01_17750 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDN01_17755 PF00392 Bacterial regulatory proteins, gntR family FDN01_17755 PF00155 Aminotransferase class I and II FDN01_17765 PF00701 Dihydrodipicolinate synthetase family FDN01_17775 PF03573 outer membrane porin, OprD family FDN01_17780 PF00719 Inorganic pyrophosphatase FDN01_17795 PF13193 AMP-binding enzyme C-terminal domain FDN01_17795 PF00501 AMP-binding enzyme FDN01_17800 PF03989 DNA gyrase C-terminal domain, beta-propeller FDN01_17800 PF00521 DNA gyrase/topoisomerase IV, subunit A FDN01_17805 PF07690 Major Facilitator Superfamily FDN01_17810 PF03458 UPF0126 domain FDN01_17815 PF02810 SEC-C motif FDN01_17820 PF03741 Integral membrane protein TerC family FDN01_17820 PF03471 Transporter associated domain FDN01_17825 PF03641 Possible lysine decarboxylase FDN01_17830 PF07690 Major Facilitator Superfamily FDN01_17840 PF00817 impB/mucB/samB family FDN01_17840 PF11799 impB/mucB/samB family C-terminal domain FDN01_17840 PF11798 IMS family HHH motif FDN01_17855 PF08497 Radical SAM N-terminal FDN01_17855 PF04055 Radical SAM superfamily FDN01_17855 PF11842 Domain of unknown function (DUF3362) FDN01_17875 PF03358 NADPH-dependent FMN reductase FDN01_17885 PF00291 Pyridoxal-phosphate dependent enzyme FDN01_17920 PF00440 Bacterial regulatory proteins, tetR family FDN01_17945 PF01327 Polypeptide deformylase FDN01_17955 PF02481 DNA recombination-mediator protein A FDN01_17955 PF17782 DprA winged helix domain FDN01_17960 PF01300 Telomere recombination FDN01_17965 PF00892 EamA-like transporter family FDN01_17970 PF00440 Bacterial regulatory proteins, tetR family FDN01_17975 PF07690 Major Facilitator Superfamily FDN01_17985 PF00255 Glutathione peroxidase FDN01_17995 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FDN01_18000 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDN01_18000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDN01_18005 PF00231 ATP synthase FDN01_18010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDN01_18010 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDN01_18010 PF00306 ATP synthase alpha/beta chain, C terminal domain FDN01_18015 PF00213 ATP synthase delta (OSCP) subunit FDN01_18020 PF00430 ATP synthase B/B' CF(0) FDN01_18025 PF00137 ATP synthase subunit C FDN01_18030 PF00119 ATP synthase A chain FDN01_18050 PF00005 ABC transporter FDN01_18055 PF00950 ABC 3 transport family FDN01_18060 PF01810 LysE type translocator FDN01_18065 PF04261 Dyp-type peroxidase family FDN01_18070 PF03949 Malic enzyme, NAD binding domain FDN01_18070 PF00390 Malic enzyme, N-terminal domain FDN01_18075 PF05746 DALR anticodon binding domain FDN01_18075 PF00750 tRNA synthetases class I (R) FDN01_18075 PF03485 Arginyl tRNA synthetase N terminal domain FDN01_18095 PF05726 Pirin C-terminal cupin domain FDN01_18095 PF02678 Pirin FDN01_18105 PF03551 Transcriptional regulator PadR-like family FDN01_18110 PF13427 Domain of unknown function (DUF4111) FDN01_18110 PF01909 Nucleotidyltransferase domain FDN01_18115 PF00958 GMP synthase C terminal domain FDN01_18115 PF02540 NAD synthase FDN01_18115 PF00117 Glutamine amidotransferase class-I FDN01_18120 PF04286 Protein of unknown function (DUF445) FDN01_18125 PF07681 DoxX FDN01_18130 PF09335 SNARE associated Golgi protein FDN01_18145 PF13614 AAA domain FDN01_18155 PF01722 BolA-like protein FDN01_18165 PF01648 4'-phosphopantetheinyl transferase superfamily FDN01_18170 PF12697 Alpha/beta hydrolase family FDN01_18185 PF00668 Condensation domain FDN01_18185 PF13193 AMP-binding enzyme C-terminal domain FDN01_18185 PF00501 AMP-binding enzyme FDN01_18185 PF00975 Thioesterase domain FDN01_18185 PF00550 Phosphopantetheine attachment site FDN01_18190 PF02801 Beta-ketoacyl synthase, C-terminal domain FDN01_18190 PF08242 Methyltransferase domain FDN01_18190 PF00109 Beta-ketoacyl synthase, N-terminal domain FDN01_18190 PF16197 Ketoacyl-synthetase C-terminal extension FDN01_18190 PF14765 Polyketide synthase dehydratase FDN01_18190 PF00550 Phosphopantetheine attachment site FDN01_18190 PF00975 Thioesterase domain FDN01_18195 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_18195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_18195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_18200 PF00501 AMP-binding enzyme FDN01_18205 PF03472 Autoinducer binding domain FDN01_18205 PF00196 Bacterial regulatory proteins, luxR family FDN01_18215 PF00765 Autoinducer synthase FDN01_18220 PF07690 Major Facilitator Superfamily FDN01_18220 PF00083 Sugar (and other) transporter FDN01_18225 PF00378 Enoyl-CoA hydratase/isomerase FDN01_18230 PF00378 Enoyl-CoA hydratase/isomerase FDN01_18235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDN01_18235 PF02770 Acyl-CoA dehydrogenase, middle domain FDN01_18235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDN01_18240 PF00501 AMP-binding enzyme FDN01_18240 PF13193 AMP-binding enzyme C-terminal domain FDN01_18245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDN01_18245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDN01_18250 PF00171 Aldehyde dehydrogenase family FDN01_18260 PF00324 Amino acid permease FDN01_18265 PF00324 Amino acid permease FDN01_18270 PF01042 Endoribonuclease L-PSP FDN01_18275 PF00842 Alanine racemase, C-terminal domain FDN01_18275 PF01168 Alanine racemase, N-terminal domain FDN01_18280 PF01266 FAD dependent oxidoreductase FDN01_18285 PF01037 Lrp/AsnC ligand binding domain FDN01_18295 PF00593 TonB dependent receptor FDN01_18295 PF07715 TonB-dependent Receptor Plug Domain FDN01_18310 PF00849 RNA pseudouridylate synthase FDN01_18325 PF00872 Transposase, Mutator family FDN01_18340 PF13737 Transposase DDE domain FDN01_18360 PF00330 Aconitase family (aconitate hydratase) FDN01_18360 PF00694 Aconitase C-terminal domain FDN01_18365 PF00285 Citrate synthase, C-terminal domain FDN01_18375 PF07729 FCD domain FDN01_18375 PF00392 Bacterial regulatory proteins, gntR family FDN01_18385 PF00155 Aminotransferase class I and II FDN01_18390 PF09330 D-lactate dehydrogenase, membrane binding FDN01_18390 PF01565 FAD binding domain FDN01_18395 PF01070 FMN-dependent dehydrogenase FDN01_18400 PF07729 FCD domain FDN01_18400 PF00392 Bacterial regulatory proteins, gntR family FDN01_18405 PF02652 L-lactate permease FDN01_18410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDN01_18410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDN01_18410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDN01_18410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDN01_18415 PF16363 GDP-mannose 4,6 dehydratase FDN01_18420 PF00342 Phosphoglucose isomerase FDN01_18425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDN01_18425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDN01_18425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDN01_18430 PF00483 Nucleotidyl transferase FDN01_18435 PF02719 Polysaccharide biosynthesis protein FDN01_18445 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FDN01_18445 PF00953 Glycosyl transferase family 4 FDN01_18450 PF01370 NAD dependent epimerase/dehydratase family FDN01_18455 PF13579 Glycosyl transferase 4-like domain FDN01_18460 PF02350 UDP-N-acetylglucosamine 2-epimerase FDN01_18465 PF01370 NAD dependent epimerase/dehydratase family FDN01_18470 PF02719 Polysaccharide biosynthesis protein FDN01_18470 PF08485 Polysaccharide biosynthesis protein C-terminal FDN01_18515 PF02348 Cytidylyltransferase FDN01_18520 PF00483 Nucleotidyl transferase FDN01_18530 PF03102 NeuB family FDN01_18530 PF08666 SAF domain FDN01_18535 PF02350 UDP-N-acetylglucosamine 2-epimerase FDN01_18540 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FDN01_18545 PF02719 Polysaccharide biosynthesis protein FDN01_18550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDN01_18550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDN01_18550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDN01_18555 PF02563 Polysaccharide biosynthesis/export protein FDN01_18555 PF10531 SLBB domain FDN01_18555 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FDN01_18560 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDN01_18565 PF13614 AAA domain FDN01_18565 PF02706 Chain length determinant protein FDN01_18565 PF13807 G-rich domain on putative tyrosine kinase FDN01_18570 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDN01_18570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN01_18575 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDN01_18575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN01_18580 PF03023 Lipid II flippase MurJ FDN01_18585 PF01510 N-acetylmuramoyl-L-alanine amidase FDN01_18590 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FDN01_18590 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FDN01_18600 PF04185 Phosphoesterase family FDN01_18600 PF05506 Domain of unknown function (DUF756) FDN01_18605 PF03725 3' exoribonuclease family, domain 2 FDN01_18605 PF01138 3' exoribonuclease family, domain 1 FDN01_18610 PF00487 Fatty acid desaturase FDN01_18615 PF00175 Oxidoreductase NAD-binding domain FDN01_18620 PF00440 Bacterial regulatory proteins, tetR family FDN01_18625 PF08360 QacR-like protein, C-terminal region FDN01_18625 PF00440 Bacterial regulatory proteins, tetR family FDN01_18630 PF01323 DSBA-like thioredoxin domain FDN01_18640 PF13419 Haloacid dehalogenase-like hydrolase FDN01_18645 PF00106 short chain dehydrogenase FDN01_18660 PF00696 Amino acid kinase family FDN01_18660 PF00583 Acetyltransferase (GNAT) family FDN01_18665 PF09084 NMT1/THI5 like FDN01_18670 PF09084 NMT1/THI5 like FDN01_18675 PF00296 Luciferase-like monooxygenase FDN01_18680 PF00528 Binding-protein-dependent transport system inner membrane component FDN01_18685 PF00005 ABC transporter FDN01_18690 PF08362 YcdC-like protein, C-terminal region FDN01_18690 PF00440 Bacterial regulatory proteins, tetR family FDN01_18695 PF01048 Phosphorylase superfamily FDN01_18710 PF01687 Riboflavin kinase FDN01_18710 PF06574 FAD synthetase FDN01_18715 PF06827 Zinc finger found in FPG and IleRS FDN01_18715 PF08264 Anticodon-binding domain of tRNA FDN01_18715 PF00133 tRNA synthetases class I (I, L, M and V) FDN01_18720 PF01252 Signal peptidase (SPase) II FDN01_18725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDN01_18765 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDN01_18770 PF07859 alpha/beta hydrolase fold FDN01_18795 PF01025 GrpE FDN01_18800 PF00012 Hsp70 protein FDN01_18820 PF13406 Transglycosylase SLT domain FDN01_18825 PF02222 ATP-grasp domain FDN01_18825 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FDN01_18830 PF00731 AIR carboxylase FDN01_18845 PF02875 Mur ligase family, glutamate ligase domain FDN01_18845 PF01225 Mur ligase family, catalytic domain FDN01_18845 PF08245 Mur ligase middle domain FDN01_18855 PF01569 PAP2 superfamily FDN01_18860 PF03741 Integral membrane protein TerC family FDN01_18870 PF03738 Glutathionylspermidine synthase preATP-grasp FDN01_18875 PF00355 Rieske [2Fe-2S] domain FDN01_18880 PF01979 Amidohydrolase family FDN01_18885 PF00156 Phosphoribosyl transferase domain FDN01_18895 PF13098 Thioredoxin-like domain FDN01_18895 PF10411 Disulfide bond isomerase protein N-terminus FDN01_18900 PF16916 Dimerisation domain of Zinc Transporter FDN01_18900 PF01545 Cation efflux family FDN01_18905 PF02583 Metal-sensitive transcriptional repressor FDN01_18910 PF01926 50S ribosome-binding GTPase FDN01_18910 PF12631 MnmE helical domain FDN01_18910 PF10396 GTP-binding protein TrmE N-terminus FDN01_18915 PF02096 60Kd inner membrane protein FDN01_18915 PF14849 YidC periplasmic domain FDN01_18920 PF01809 Putative membrane protein insertion efficiency factor FDN01_18925 PF00825 Ribonuclease P FDN01_18930 PF00468 Ribosomal protein L34 FDN01_18935 PF00308 Bacterial dnaA protein FDN01_18935 PF08299 Bacterial dnaA protein helix-turn-helix FDN01_18935 PF11638 DnaA N-terminal domain FDN01_18940 PF00712 DNA polymerase III beta subunit, N-terminal domain FDN01_18940 PF02768 DNA polymerase III beta subunit, C-terminal domain FDN01_18940 PF02767 DNA polymerase III beta subunit, central domain FDN01_18945 PF02463 RecF/RecN/SMC N terminal domain FDN01_18950 PF18053 DNA gyrase B subunit insert domain FDN01_18950 PF00986 DNA gyrase B subunit, carboxyl terminus FDN01_18950 PF00204 DNA gyrase B FDN01_18950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_18950 PF01751 Toprim domain FDN01_18960 PF09335 SNARE associated Golgi protein FDN01_18965 PF00005 ABC transporter FDN01_18965 PF12848 ABC transporter FDN01_18985 PF01521 Iron-sulphur cluster biosynthesis FDN01_18990 PF00561 alpha/beta hydrolase fold FDN01_18995 PF03702 Anhydro-N-acetylmuramic acid kinase FDN01_19000 PF00579 tRNA synthetases class I (W and Y) FDN01_19040 PF00209 Sodium:neurotransmitter symporter family FDN01_19050 PF01189 16S rRNA methyltransferase RsmB/F FDN01_19050 PF01029 NusB family FDN01_19055 PF02911 Formyl transferase, C-terminal domain FDN01_19055 PF00551 Formyl transferase FDN01_19060 PF00920 Dehydratase family FDN01_19075 PF03466 LysR substrate binding domain FDN01_19075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_19080 PF00860 Permease family FDN01_19085 PF00311 Phosphoenolpyruvate carboxylase FDN01_19090 PF00440 Bacterial regulatory proteins, tetR family FDN01_19090 PF08361 MAATS-type transcriptional repressor, C-terminal region FDN01_19095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDN01_19100 PF00873 AcrB/AcrD/AcrF family FDN01_19110 PF00226 DnaJ domain FDN01_19110 PF00684 DnaJ central domain FDN01_19110 PF01556 DnaJ C terminal domain FDN01_19120 PF05173 Dihydrodipicolinate reductase, C-terminus FDN01_19120 PF01113 Dihydrodipicolinate reductase, N-terminus FDN01_19130 PF07690 Major Facilitator Superfamily FDN01_19135 PF00248 Aldo/keto reductase family FDN01_19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDN01_19140 PF03466 LysR substrate binding domain FDN01_19155 PF00392 Bacterial regulatory proteins, gntR family FDN01_19155 PF00155 Aminotransferase class I and II FDN01_19160 PF00107 Zinc-binding dehydrogenase FDN01_19160 PF08240 Alcohol dehydrogenase GroES-like domain FDN01_19165 PF03352 Methyladenine glycosylase FDN01_19180 PF00633 Helix-hairpin-helix motif FDN01_19180 PF14815 NUDIX domain FDN01_19180 PF10576 Iron-sulfur binding domain of endonuclease III FDN01_19180 PF00730 HhH-GPD superfamily base excision DNA repair protein FDN01_19190 PF02230 Phospholipase/Carboxylesterase FDN01_19195 PF07043 Protein of unknown function (DUF1328) FDN01_19200 PF03692 Putative zinc- or iron-chelating domain FDN01_19205 PF07995 Glucose / Sorbosone dehydrogenase FDN01_19210 PF12002 MgsA AAA+ ATPase C terminal FDN01_19210 PF16193 AAA C-terminal domain FDN01_19210 PF00004 ATPase family associated with various cellular activities (AAA) FDN01_19225 PF01259 SAICAR synthetase FDN01_19235 PF00701 Dihydrodipicolinate synthetase family FDN01_19240 PF00857 Isochorismatase family FDN01_19245 PF01758 Sodium Bile acid symporter family FDN01_19250 PF01554 MatE FDN01_19255 PF04463 Protein of unknown function (DUF523) FDN01_19260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDN01_19270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDN01_19275 PF14497 Glutathione S-transferase, C-terminal domain FDN01_19275 PF02798 Glutathione S-transferase, N-terminal domain FDN01_19285 PF00324 Amino acid permease FDN01_19295 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDN01_19295 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDN01_19310 PF05962 HutD FDN01_19315 PF01175 Urocanase Rossmann-like domain FDN01_19315 PF17392 Urocanase C-terminal domain FDN01_19315 PF17391 Urocanase N-terminal domain FDN01_19320 PF00221 Aromatic amino acid lyase FDN01_19325 PF00324 Amino acid permease FDN01_19330 PF01979 Amidohydrolase family FDN01_19335 PF00491 Arginase family FDN01_19350 PF01177 Asp/Glu/Hydantoin racemase FDN01_19355 PF01380 SIS domain FDN01_19360 PF12804 MobA-like NTP transferase domain FDN01_19360 PF14602 Hexapeptide repeat of succinyl-transferase FDN01_19360 PF00132 Bacterial transferase hexapeptide (six repeats) FDN01_19365 PF04608 Phosphatidylglycerophosphatase A FDN01_19370 PF02769 AIR synthase related protein, C-terminal domain FDN01_19370 PF00586 AIR synthase related protein, N-terminal domain FDN01_19375 PF01029 NusB family FDN01_19380 PF00885 6,7-dimethyl-8-ribityllumazine synthase FDN01_19385 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDN01_19385 PF00925 GTP cyclohydrolase II FDN01_19415 PF02580 D-Tyr-tRNA(Tyr) deacylase FDN01_19420 PF06628 Catalase-related immune-responsive FDN01_19420 PF00199 Catalase FDN01_19430 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDN01_19430 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FDN01_19435 PF00581 Rhodanese-like domain FDN01_19440 PF02666 Phosphatidylserine decarboxylase FDN01_19445 PF03069 Acetamidase/Formamidase family FDN01_19450 PF01547 Bacterial extracellular solute-binding protein FDN01_19460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDN01_19460 PF00512 His Kinase A (phospho-acceptor) domain FDN01_19460 PF00989 PAS fold FDN01_19460 PF11808 Phosphate regulon sensor protein PhoR FDN01_19465 PF00072 Response regulator receiver domain FDN01_19465 PF00486 Transcriptional regulatory protein, C terminal FDN01_19475 PF00106 short chain dehydrogenase FDN01_19480 PF01554 MatE FDN01_19485 PF00155 Aminotransferase class I and II FDN01_19490 PF04286 Protein of unknown function (DUF445) FDN01_19505 PF04262 Glutamate-cysteine ligase FDN01_19510 PF02600 Disulfide bond formation protein DsbB FDN01_19515 PF04717 Type VI secretion system, phage-baseplate injector FDN01_19530 PF01051 Initiator Replication protein FDN01_19555 PF07715 TonB-dependent Receptor Plug Domain FDN01_19555 PF00593 TonB dependent receptor FDN01_19575 PF05973 Phage derived protein Gp49-like (DUF891) FDN01_19590 PF03389 MobA/MobL family