locus-tag class description M2J07_00005 PF01051 Initiator Replication protein M2J07_00055 PF06834 TraU protein M2J07_00090 PF10411 Disulfide bond isomerase protein N-terminus M2J07_00090 PF13098 Thioredoxin-like domain M2J07_00125 PF01464 Transglycosylase SLT domain M2J07_00140 PF02796 Helix-turn-helix domain of resolvase M2J07_00140 PF00239 Resolvase, N terminal domain M2J07_00175 PF18272 single-stranded DNA binding TraI N-terminal subdomain M2J07_00175 PF07057 DNA helicase TraI M2J07_00175 PF18340 DNA relaxase TraI 2B/2B-like domain M2J07_00175 PF08751 TrwC relaxase M2J07_00210 PF01556 DnaJ C terminal domain M2J07_00210 PF00684 DnaJ central domain M2J07_00210 PF00226 DnaJ domain M2J07_00305 PF05816 Toxic anion resistance protein (TelA) M2J07_00320 PF17762 HTH domain found in ParB protein M2J07_00320 PF02195 ParB-like nuclease domain M2J07_00325 PF13614 AAA domain M2J07_00380 PF00816 H-NS histone family M2J07_00385 PF00565 Staphylococcal nuclease homologue M2J07_00475 PF13438 Domain of unknown function (DUF4113) M2J07_00475 PF00817 impB/mucB/samB family M2J07_00475 PF11799 impB/mucB/samB family C-terminal domain M2J07_00495 PF06122 Conjugative relaxosome accessory transposon protein M2J07_00515 PF01266 FAD dependent oxidoreductase M2J07_00520 PF00490 Delta-aminolevulinic acid dehydratase M2J07_00525 PF03061 Thioesterase superfamily M2J07_00530 PF13533 Biotin-lipoyl like M2J07_00535 PF07690 Major Facilitator Superfamily M2J07_00575 PF00929 Exonuclease M2J07_00645 PF00145 C-5 cytosine-specific DNA methylase M2J07_00650 PF01555 DNA methylase M2J07_00680 PF01555 DNA methylase M2J07_00690 PF01695 IstB-like ATP binding protein M2J07_00735 PF07007 Lysozyme inhibitor LprI M2J07_00885 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M2J07_00925 PF00712 DNA polymerase III beta subunit, N-terminal domain M2J07_00925 PF02767 DNA polymerase III beta subunit, central domain M2J07_00925 PF02768 DNA polymerase III beta subunit, C-terminal domain M2J07_01010 PF11799 impB/mucB/samB family C-terminal domain M2J07_01010 PF11798 IMS family HHH motif M2J07_01010 PF00817 impB/mucB/samB family M2J07_01010 PF13438 Domain of unknown function (DUF4113) M2J07_01015 PF00717 Peptidase S24-like M2J07_01070 PF00083 Sugar (and other) transporter M2J07_01075 PF00701 Dihydrodipicolinate synthetase family M2J07_01085 PF04542 Sigma-70 region 2 M2J07_01085 PF08281 Sigma-70, region 4 M2J07_01095 PF07715 TonB-dependent Receptor Plug Domain M2J07_01095 PF00593 TonB dependent receptor M2J07_01105 PF04575 Protein of unknown function (DUF560) M2J07_01115 PF01126 Heme oxygenase M2J07_01140 PF13520 Amino acid permease M2J07_01145 PF02574 Homocysteine S-methyltransferase M2J07_01155 PF06039 Malate:quinone oxidoreductase (Mqo) M2J07_01160 PF05199 GMC oxidoreductase M2J07_01160 PF00732 GMC oxidoreductase M2J07_01165 PF00171 Aldehyde dehydrogenase family M2J07_01170 PF00440 Bacterial regulatory proteins, tetR family M2J07_01170 PF13977 BetI-type transcriptional repressor, C-terminal M2J07_01175 PF02028 BCCT, betaine/carnitine/choline family transporter M2J07_01180 PF02028 BCCT, betaine/carnitine/choline family transporter M2J07_01190 PF03061 Thioesterase superfamily M2J07_01200 PF02492 CobW/HypB/UreG, nucleotide-binding domain M2J07_01200 PF07683 Cobalamin synthesis protein cobW C-terminal domain M2J07_01205 PF00375 Sodium:dicarboxylate symporter family M2J07_01210 PF07152 YaeQ protein M2J07_01215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M2J07_01220 PF14883 Hypothetical glycosyl hydrolase family 13 M2J07_01220 PF01522 Polysaccharide deacetylase M2J07_01225 PF00535 Glycosyl transferase family 2 M2J07_01235 PF00378 Enoyl-CoA hydratase/isomerase M2J07_01250 PF09339 IclR helix-turn-helix domain M2J07_01250 PF01614 Bacterial transcriptional regulator M2J07_01255 PF00355 Rieske [2Fe-2S] domain M2J07_01265 PF00355 Rieske [2Fe-2S] domain M2J07_01275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M2J07_01280 PF14759 Reductase C-terminal M2J07_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_01285 PF07690 Major Facilitator Superfamily M2J07_01295 PF12697 Alpha/beta hydrolase family M2J07_01305 PF01958 Domain of unknown function DUF108 M2J07_01305 PF03447 Homoserine dehydrogenase, NAD binding domain M2J07_01310 PF00171 Aldehyde dehydrogenase family M2J07_01315 PF00205 Thiamine pyrophosphate enzyme, central domain M2J07_01315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M2J07_01315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M2J07_01325 PF07690 Major Facilitator Superfamily M2J07_01330 PF01327 Polypeptide deformylase M2J07_01335 PF04960 Glutaminase M2J07_01340 PF02311 AraC-like ligand binding domain M2J07_01340 PF12833 Helix-turn-helix domain M2J07_01345 PF07690 Major Facilitator Superfamily M2J07_01350 PF01263 Aldose 1-epimerase M2J07_01360 PF03466 LysR substrate binding domain M2J07_01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_01370 PF07690 Major Facilitator Superfamily M2J07_01375 PF00456 Transketolase, thiamine diphosphate binding domain M2J07_01380 PF02779 Transketolase, pyrimidine binding domain M2J07_01380 PF02780 Transketolase, C-terminal domain M2J07_01385 PF02607 B12 binding domain M2J07_01385 PF02574 Homocysteine S-methyltransferase M2J07_01385 PF02965 Vitamin B12 dependent methionine synthase, activation domain M2J07_01385 PF00809 Pterin binding enzyme M2J07_01385 PF02310 B12 binding domain M2J07_01390 PF01384 Phosphate transporter family M2J07_01395 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_01410 PF03781 Sulfatase-modifying factor enzyme 1 M2J07_01415 PF00884 Sulfatase M2J07_01425 PF01521 Iron-sulphur cluster biosynthesis M2J07_01425 PF01106 NifU-like domain M2J07_01430 PF00593 TonB dependent receptor M2J07_01430 PF07715 TonB-dependent Receptor Plug Domain M2J07_01440 PF00561 alpha/beta hydrolase fold M2J07_01445 PF00484 Carbonic anhydrase M2J07_01450 PF13472 GDSL-like Lipase/Acylhydrolase family M2J07_01455 PF00005 ABC transporter M2J07_01465 PF01694 Rhomboid family M2J07_01470 PF00912 Transglycosylase M2J07_01475 PF13090 Polyphosphate kinase C-terminal domain 2 M2J07_01475 PF02503 Polyphosphate kinase middle domain M2J07_01475 PF17941 Polyphosphate kinase C-terminal domain 1 M2J07_01475 PF13089 Polyphosphate kinase N-terminal domain M2J07_01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_01485 PF03466 LysR substrate binding domain M2J07_01490 PF00561 alpha/beta hydrolase fold M2J07_01495 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_01495 PF18113 Rubredoxin binding C-terminal domain M2J07_01500 PF00301 Rubredoxin M2J07_01515 PF01336 OB-fold nucleic acid binding domain M2J07_01515 PF00152 tRNA synthetases class II (D, K and N) M2J07_01520 PF14052 Capsule assembly protein Wzi M2J07_01530 PF01507 Phosphoadenosine phosphosulfate reductase family M2J07_01535 PF00009 Elongation factor Tu GTP binding domain M2J07_01550 PF03600 Citrate transporter M2J07_01555 PF01595 Cyclin M transmembrane N-terminal domain M2J07_01555 PF03471 Transporter associated domain M2J07_01555 PF00571 CBS domain M2J07_01560 PF03466 LysR substrate binding domain M2J07_01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_01565 PF00463 Isocitrate lyase family M2J07_01580 PF01774 UreD urease accessory protein M2J07_01585 PF00547 Urease, gamma subunit M2J07_01590 PF00699 Urease beta subunit M2J07_01595 PF00449 Urease alpha-subunit, N-terminal domain M2J07_01595 PF01979 Amidohydrolase family M2J07_01600 PF02814 UreE urease accessory protein, N-terminal domain M2J07_01600 PF05194 UreE urease accessory protein, C-terminal domain M2J07_01605 PF01730 UreF M2J07_01610 PF02492 CobW/HypB/UreG, nucleotide-binding domain M2J07_01625 PF03717 Penicillin-binding Protein dimerisation domain M2J07_01625 PF00905 Penicillin binding protein transpeptidase domain M2J07_01640 PF05191 Adenylate kinase, active site lid M2J07_01650 PF10576 Iron-sulfur binding domain of endonuclease III M2J07_01650 PF00633 Helix-hairpin-helix motif M2J07_01650 PF00730 HhH-GPD superfamily base excision DNA repair protein M2J07_01655 PF04060 Putative Fe-S cluster M2J07_01660 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M2J07_01660 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M2J07_01670 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M2J07_01675 PF02590 Predicted SPOUT methyltransferase M2J07_01680 PF02190 ATP-dependent protease La (LON) substrate-binding domain M2J07_01680 PF05362 Lon protease (S16) C-terminal proteolytic domain M2J07_01680 PF00004 ATPase family associated with various cellular activities (AAA) M2J07_01685 PF13018 Extended Signal Peptide of Type V secretion system M2J07_01685 PF05662 Coiled stalk of trimeric autotransporter adhesin M2J07_01685 PF05658 Head domain of trimeric autotransporter adhesin M2J07_01685 PF03895 YadA-like membrane anchor domain M2J07_01690 PF00691 OmpA family M2J07_01690 PF04355 SmpA / OmlA family M2J07_01695 PF01812 5-formyltetrahydrofolate cyclo-ligase family M2J07_02000 PF01381 Helix-turn-helix M2J07_02005 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB M2J07_02070 PF08019 Phosphoethanolamine transferase EptA/EptB M2J07_02070 PF00884 Sulfatase M2J07_02110 PF05195 Aminopeptidase P, N-terminal domain M2J07_02110 PF00557 Metallopeptidase family M24 M2J07_02115 PF01494 FAD binding domain M2J07_02120 PF01494 FAD binding domain M2J07_02130 PF13411 MerR HTH family regulatory protein M2J07_02140 PF01810 LysE type translocator M2J07_02145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_02145 PF03466 LysR substrate binding domain M2J07_02155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M2J07_02160 PF02021 Uncharacterised protein family UPF0102 M2J07_02165 PF04972 BON domain M2J07_02175 PF09297 NADH pyrophosphatase zinc ribbon domain M2J07_02175 PF00293 NUDIX domain M2J07_02185 PF00929 Exonuclease M2J07_02190 PF01464 Transglycosylase SLT domain M2J07_02190 PF01476 LysM domain M2J07_02190 PF01464 Transglycosylase SLT domain M2J07_02190 PF01476 LysM domain M2J07_02195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M2J07_02200 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_02205 PF12911 N-terminal TM domain of oligopeptide transport permease C M2J07_02205 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_02210 PF00005 ABC transporter M2J07_02210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M2J07_02215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M2J07_02215 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_02220 PF00593 TonB dependent receptor M2J07_02220 PF07715 TonB-dependent Receptor Plug Domain M2J07_02230 PF00929 Exonuclease M2J07_02235 PF01979 Amidohydrolase family M2J07_02240 PF01590 GAF domain M2J07_02240 PF00990 Diguanylate cyclase, GGDEF domain M2J07_02240 PF00360 Phytochrome region M2J07_02240 PF00563 EAL domain M2J07_02245 PF00764 Arginosuccinate synthase M2J07_02250 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_02250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M2J07_02265 PF05987 Bacterial protein of unknown function (DUF898) M2J07_02270 PF03180 NLPA lipoprotein M2J07_02290 PF13296 Putative type VI secretion system Rhs element Vgr M2J07_02290 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M2J07_02290 PF04717 Type VI secretion system, phage-baseplate injector M2J07_02295 PF03527 RHS protein M2J07_02295 PF05593 RHS Repeat M2J07_02335 PF00324 Amino acid permease M2J07_02340 PF01266 FAD dependent oxidoreductase M2J07_02365 PF00392 Bacterial regulatory proteins, gntR family M2J07_02365 PF07729 FCD domain M2J07_02380 PF13610 DDE domain M2J07_02390 PF00106 short chain dehydrogenase M2J07_02395 PF00743 Flavin-binding monooxygenase-like M2J07_02405 PF00860 Permease family M2J07_02410 PF00962 Adenosine/AMP deaminase M2J07_02415 PF01292 Prokaryotic cytochrome b561 M2J07_02425 PF01351 Ribonuclease HII M2J07_02430 PF02599 Global regulator protein family M2J07_02435 PF00696 Amino acid kinase family M2J07_02435 PF01842 ACT domain M2J07_02435 PF13840 ACT domain M2J07_02440 PF01411 tRNA synthetases class II (A) M2J07_02440 PF02272 DHHA1 domain M2J07_02440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M2J07_02445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M2J07_02445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M2J07_02450 PF13393 Histidyl-tRNA synthetase M2J07_02455 PF00709 Adenylosuccinate synthetase M2J07_02470 PF00248 Aldo/keto reductase family M2J07_02475 PF00027 Cyclic nucleotide-binding domain M2J07_02475 PF13545 Crp-like helix-turn-helix domain M2J07_02485 PF02566 OsmC-like protein M2J07_02500 PF02861 Clp amino terminal domain, pathogenicity island component M2J07_02500 PF17871 AAA lid domain M2J07_02500 PF00004 ATPase family associated with various cellular activities (AAA) M2J07_02500 PF10431 C-terminal, D2-small domain, of ClpB protein M2J07_02500 PF07724 AAA domain (Cdc48 subfamily) M2J07_02515 PF01170 Putative RNA methylase family UPF0020 M2J07_02515 PF02926 THUMP domain M2J07_02515 PF10672 S-adenosylmethionine-dependent methyltransferase M2J07_02525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M2J07_02525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M2J07_02530 PF01979 Amidohydrolase family M2J07_02535 PF13488 Glycine zipper M2J07_02535 PF00691 OmpA family M2J07_02545 PF13417 Glutathione S-transferase, N-terminal domain M2J07_02545 PF00043 Glutathione S-transferase, C-terminal domain M2J07_02550 PF02390 Putative methyltransferase M2J07_02560 PF02798 Glutathione S-transferase, N-terminal domain M2J07_02560 PF00043 Glutathione S-transferase, C-terminal domain M2J07_02570 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_02570 PF13192 Thioredoxin domain M2J07_02590 PF10417 C-terminal domain of 1-Cys peroxiredoxin M2J07_02590 PF00578 AhpC/TSA family M2J07_02595 PF00271 Helicase conserved C-terminal domain M2J07_02595 PF00270 DEAD/DEAH box helicase M2J07_02595 PF11898 Domain of unknown function (DUF3418) M2J07_02595 PF04408 Helicase associated domain (HA2) M2J07_02595 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M2J07_02600 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M2J07_02600 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M2J07_02610 PF07690 Major Facilitator Superfamily M2J07_02615 PF03594 Benzoate membrane transport protein M2J07_02620 PF00106 short chain dehydrogenase M2J07_02625 PF00970 Oxidoreductase FAD-binding domain M2J07_02625 PF00175 Oxidoreductase NAD-binding domain M2J07_02625 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_02635 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M2J07_02635 PF00355 Rieske [2Fe-2S] domain M2J07_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_02645 PF03466 LysR substrate binding domain M2J07_02655 PF00970 Oxidoreductase FAD-binding domain M2J07_02655 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_02655 PF00175 Oxidoreductase NAD-binding domain M2J07_02665 PF04945 YHS domain M2J07_02665 PF02332 Methane/Phenol/Toluene Hydroxylase M2J07_02670 PF02406 MmoB/DmpM family M2J07_02675 PF02332 Methane/Phenol/Toluene Hydroxylase M2J07_02680 PF06099 Phenol hydroxylase subunit M2J07_02690 PF06505 Activator of aromatic catabolism M2J07_02690 PF02830 V4R domain M2J07_02690 PF00158 Sigma-54 interaction domain M2J07_02690 PF02954 Bacterial regulatory protein, Fis family M2J07_02700 PF00403 Heavy-metal-associated domain M2J07_02705 PF00376 MerR family regulatory protein M2J07_02705 PF09278 MerR, DNA binding M2J07_02740 PF02601 Exonuclease VII, large subunit M2J07_02740 PF13742 OB-fold nucleic acid binding domain M2J07_02770 PF01810 LysE type translocator M2J07_02775 PF00313 'Cold-shock' DNA-binding domain M2J07_02785 PF14748 Pyrroline-5-carboxylate reductase dimerisation M2J07_02785 PF03807 NADP oxidoreductase coenzyme F420-dependent M2J07_02810 PF07690 Major Facilitator Superfamily M2J07_02815 PF01638 HxlR-like helix-turn-helix M2J07_02840 PF01406 tRNA synthetases class I (C) catalytic domain M2J07_02840 PF09190 DALR domain M2J07_02845 PF00571 CBS domain M2J07_02845 PF01380 SIS domain M2J07_02860 PF03968 OstA-like protein M2J07_02865 PF00005 ABC transporter M2J07_02865 PF12399 Branched-chain amino acid ATP-binding cassette transporter M2J07_02870 PF02321 Outer membrane efflux protein M2J07_02875 PF03412 Peptidase C39 family M2J07_02875 PF00005 ABC transporter M2J07_02875 PF00664 ABC transporter transmembrane region M2J07_02885 PF01205 Uncharacterized protein family UPF0029 M2J07_02890 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_02900 PF01596 O-methyltransferase M2J07_02910 PF00037 4Fe-4S binding domain M2J07_02910 PF11953 Domain of unknown function (DUF3470) M2J07_02920 PF05190 MutS family domain IV M2J07_02920 PF05188 MutS domain II M2J07_02920 PF05192 MutS domain III M2J07_02920 PF00488 MutS domain V M2J07_02920 PF01624 MutS domain I M2J07_02925 PF01037 Lrp/AsnC ligand binding domain M2J07_02930 PF00892 EamA-like transporter family M2J07_02935 PF03707 Bacterial signalling protein N terminal repeat M2J07_02935 PF00990 Diguanylate cyclase, GGDEF domain M2J07_02935 PF00563 EAL domain M2J07_02940 PF03279 Bacterial lipid A biosynthesis acyltransferase M2J07_02955 PF07690 Major Facilitator Superfamily M2J07_02975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M2J07_02975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M2J07_02995 PF13419 Haloacid dehalogenase-like hydrolase M2J07_03005 PF13296 Putative type VI secretion system Rhs element Vgr M2J07_03005 PF04717 Type VI secretion system, phage-baseplate injector M2J07_03005 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M2J07_03010 PF03527 RHS protein M2J07_03010 PF05593 RHS Repeat M2J07_03025 PF03466 LysR substrate binding domain M2J07_03025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_03030 PF01566 Natural resistance-associated macrophage protein M2J07_03035 PF03746 LamB/YcsF family M2J07_03040 PF07286 Protein of unknown function (DUF1445) M2J07_03050 PF00364 Biotin-requiring enzyme M2J07_03050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M2J07_03050 PF02785 Biotin carboxylase C-terminal domain M2J07_03050 PF00289 Biotin carboxylase, N-terminal domain M2J07_03055 PF00654 Voltage gated chloride channel M2J07_03075 PF00440 Bacterial regulatory proteins, tetR family M2J07_03085 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_03085 PF13823 Alcohol dehydrogenase GroES-associated M2J07_03085 PF00107 Zinc-binding dehydrogenase M2J07_03100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M2J07_03100 PF00289 Biotin carboxylase, N-terminal domain M2J07_03100 PF02785 Biotin carboxylase C-terminal domain M2J07_03105 PF02525 Flavodoxin-like fold M2J07_03125 PF08753 NikR C terminal nickel binding domain M2J07_03125 PF01402 Ribbon-helix-helix protein, copG family M2J07_03130 PF01425 Amidase M2J07_03135 PF00497 Bacterial extracellular solute-binding proteins, family 3 M2J07_03140 PF00005 ABC transporter M2J07_03165 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M2J07_03180 PF05947 Type VI secretion system, TssF M2J07_03195 PF06761 Intracellular multiplication and human macrophage-killing M2J07_03195 PF14331 ImcF-related N-terminal domain M2J07_03195 PF06744 Type VI secretion protein IcmF C-terminal M2J07_03205 PF01389 OmpA-like transmembrane domain M2J07_03205 PF00691 OmpA family M2J07_03220 PF00004 ATPase family associated with various cellular activities (AAA) M2J07_03220 PF10431 C-terminal, D2-small domain, of ClpB protein M2J07_03220 PF17871 AAA lid domain M2J07_03220 PF07724 AAA domain (Cdc48 subfamily) M2J07_03225 PF06812 ImpA, N-terminal, type VI secretion system M2J07_03230 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M2J07_03250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_03250 PF03466 LysR substrate binding domain M2J07_03260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M2J07_03265 PF07690 Major Facilitator Superfamily M2J07_03280 PF02677 Epoxyqueuosine reductase QueH M2J07_03295 PF00376 MerR family regulatory protein M2J07_03295 PF09278 MerR, DNA binding M2J07_03305 PF00701 Dihydrodipicolinate synthetase family M2J07_03315 PF00392 Bacterial regulatory proteins, gntR family M2J07_03320 PF05544 Proline racemase M2J07_03325 PF01266 FAD dependent oxidoreductase M2J07_03335 PF04324 BFD-like [2Fe-2S] binding domain M2J07_03335 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_03345 PF00083 Sugar (and other) transporter M2J07_03350 PF00171 Aldehyde dehydrogenase family M2J07_03355 PF13520 Amino acid permease M2J07_03360 PF03313 Serine dehydratase alpha chain M2J07_03360 PF03315 Serine dehydratase beta chain M2J07_03365 PF01575 MaoC like domain M2J07_03365 PF00171 Aldehyde dehydrogenase family M2J07_03370 PF05138 Phenylacetic acid catabolic protein M2J07_03375 PF06243 Phenylacetic acid degradation B M2J07_03380 PF05138 Phenylacetic acid catabolic protein M2J07_03385 PF01883 Iron-sulfur cluster assembly protein M2J07_03390 PF00175 Oxidoreductase NAD-binding domain M2J07_03390 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_03390 PF00970 Oxidoreductase FAD-binding domain M2J07_03395 PF00378 Enoyl-CoA hydratase/isomerase M2J07_03400 PF00378 Enoyl-CoA hydratase/isomerase M2J07_03405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M2J07_03405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M2J07_03405 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M2J07_03410 PF00108 Thiolase, N-terminal domain M2J07_03410 PF02803 Thiolase, C-terminal domain M2J07_03415 PF14535 AMP-binding enzyme C-terminal domain M2J07_03415 PF00501 AMP-binding enzyme M2J07_03420 PF08223 PaaX-like protein C-terminal domain M2J07_03420 PF07848 PaaX-like protein M2J07_03425 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_03430 PF03061 Thioesterase superfamily M2J07_03465 PF00199 Catalase M2J07_03470 PF01292 Prokaryotic cytochrome b561 M2J07_03490 PF13610 DDE domain M2J07_03495 PF00893 Small Multidrug Resistance protein M2J07_03500 PF00809 Pterin binding enzyme M2J07_03520 PF00664 ABC transporter transmembrane region M2J07_03520 PF00005 ABC transporter M2J07_03545 PF00809 Pterin binding enzyme M2J07_03565 PF00664 ABC transporter transmembrane region M2J07_03565 PF00005 ABC transporter M2J07_03590 PF00809 Pterin binding enzyme M2J07_03605 PF07091 Ribosomal RNA methyltransferase (FmrO) M2J07_03620 PF00005 ABC transporter M2J07_03620 PF12848 ABC transporter M2J07_03625 PF01636 Phosphotransferase enzyme family M2J07_03635 PF03050 Transposase IS66 family M2J07_03635 PF13007 Transposase C of IS166 homeodomain M2J07_03635 PF13005 zinc-finger binding domain of transposase IS66 M2J07_03635 PF13817 IS66 C-terminal element M2J07_03660 PF13610 DDE domain M2J07_03670 PF02954 Bacterial regulatory protein, Fis family M2J07_03670 PF00072 Response regulator receiver domain M2J07_03670 PF00158 Sigma-54 interaction domain M2J07_03675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_03675 PF00512 His Kinase A (phospho-acceptor) domain M2J07_03675 PF00989 PAS fold M2J07_03680 PF18693 TRAM domain M2J07_03680 PF04055 Radical SAM superfamily M2J07_03680 PF00919 Uncharacterized protein family UPF0004 M2J07_03685 PF00696 Amino acid kinase family M2J07_03690 PF01765 Ribosome recycling factor M2J07_03695 PF01255 Putative undecaprenyl diphosphate synthase M2J07_03705 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M2J07_03705 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M2J07_03705 PF13288 DXP reductoisomerase C-terminal domain M2J07_03710 PF13180 PDZ domain M2J07_03710 PF17820 PDZ domain M2J07_03710 PF02163 Peptidase family M50 M2J07_03715 PF01103 Surface antigen M2J07_03715 PF07244 Surface antigen variable number repeat M2J07_03725 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_03725 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M2J07_03730 PF07977 FabA-like domain M2J07_03735 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M2J07_03735 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_03750 PF02631 RecX family M2J07_03755 PF00154 recA bacterial DNA recombination protein M2J07_03760 PF01479 S4 domain M2J07_03765 PF13419 Haloacid dehalogenase-like hydrolase M2J07_03790 PF01037 Lrp/AsnC ligand binding domain M2J07_03795 PF00266 Aminotransferase class-V M2J07_03800 PF00324 Amino acid permease M2J07_03815 PF00082 Subtilase family M2J07_03815 PF05922 Peptidase inhibitor I9 M2J07_03820 PF00916 Sulfate permease family M2J07_03820 PF01740 STAS domain M2J07_03830 PF13610 DDE domain M2J07_03840 PF01979 Amidohydrolase family M2J07_03840 PF13382 Adenine deaminase C-terminal domain M2J07_03850 PF03960 ArsC family M2J07_03855 PF01022 Bacterial regulatory protein, arsR family M2J07_03860 PF01758 Sodium Bile acid symporter family M2J07_03865 PF03466 LysR substrate binding domain M2J07_03865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_03880 PF13192 Thioredoxin domain M2J07_03880 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_03895 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_03900 PF00588 SpoU rRNA Methylase family M2J07_03905 PF01336 OB-fold nucleic acid binding domain M2J07_03905 PF02811 PHP domain M2J07_03905 PF07733 Bacterial DNA polymerase III alpha NTPase domain M2J07_03905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M2J07_03905 PF14579 Helix-hairpin-helix motif M2J07_03910 PF00710 Asparaginase, N-terminal M2J07_03910 PF17763 Glutaminase/Asparaginase C-terminal domain M2J07_03915 PF00375 Sodium:dicarboxylate symporter family M2J07_03920 PF00155 Aminotransferase class I and II M2J07_03925 PF01641 SelR domain M2J07_03930 PF00255 Glutathione peroxidase M2J07_03935 PF12833 Helix-turn-helix domain M2J07_03935 PF12852 Cupin M2J07_03945 PF00155 Aminotransferase class I and II M2J07_03950 PF01909 Nucleotidyltransferase domain M2J07_03950 PF01966 HD domain M2J07_03950 PF08335 GlnD PII-uridylyltransferase M2J07_03955 PF02222 ATP-grasp domain M2J07_03965 PF05437 Branched-chain amino acid transport protein (AzlD) M2J07_03970 PF03591 AzlC protein M2J07_03995 PF01926 50S ribosome-binding GTPase M2J07_03995 PF06071 Protein of unknown function (DUF933) M2J07_04000 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_04005 PF09383 NIL domain M2J07_04005 PF00005 ABC transporter M2J07_04010 PF03180 NLPA lipoprotein M2J07_04015 PF03180 NLPA lipoprotein M2J07_04020 PF00296 Luciferase-like monooxygenase M2J07_04030 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M2J07_04030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_04045 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_04050 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_04055 PF00005 ABC transporter M2J07_04065 PF01037 Lrp/AsnC ligand binding domain M2J07_04070 PF01709 Transcriptional regulator M2J07_04080 PF00440 Bacterial regulatory proteins, tetR family M2J07_04110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_04110 PF03466 LysR substrate binding domain M2J07_04120 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M2J07_04130 PF00892 EamA-like transporter family M2J07_04150 PF13954 PapC N-terminal domain M2J07_04150 PF13953 PapC C-terminal domain M2J07_04150 PF00577 Outer membrane usher protein M2J07_04155 PF02753 Pili assembly chaperone PapD, C-terminal domain M2J07_04155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M2J07_04160 PF16970 Type-1 fimbrial protein, A M2J07_04175 PF04055 Radical SAM superfamily M2J07_04175 PF06968 Biotin and Thiamin Synthesis associated domain M2J07_04180 PF08331 Domain of unknown function (DUF1730) M2J07_04185 PF03853 YjeF-related protein N-terminus M2J07_04185 PF01256 Carbohydrate kinase M2J07_04190 PF02075 Crossover junction endodeoxyribonuclease RuvC M2J07_04205 PF00905 Penicillin binding protein transpeptidase domain M2J07_04225 PF02773 S-adenosylmethionine synthetase, C-terminal domain M2J07_04225 PF02772 S-adenosylmethionine synthetase, central domain M2J07_04225 PF00438 S-adenosylmethionine synthetase, N-terminal domain M2J07_04230 PF00456 Transketolase, thiamine diphosphate binding domain M2J07_04230 PF02780 Transketolase, C-terminal domain M2J07_04230 PF02779 Transketolase, pyrimidine binding domain M2J07_04240 PF04264 YceI-like domain M2J07_04250 PF09992 Phosphodiester glycosidase M2J07_04260 PF05958 tRNA (Uracil-5-)-methyltransferase M2J07_04265 PF04229 GrpB protein M2J07_04270 PF00171 Aldehyde dehydrogenase family M2J07_04270 PF01619 Proline dehydrogenase M2J07_04270 PF14850 DNA-binding domain of Proline dehydrogenase M2J07_04270 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M2J07_04275 PF01037 Lrp/AsnC ligand binding domain M2J07_04280 PF00474 Sodium:solute symporter family M2J07_04285 PF02146 Sir2 family M2J07_04290 PF01597 Glycine cleavage H-protein M2J07_04295 PF12833 Helix-turn-helix domain M2J07_04295 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M2J07_04305 PF00005 ABC transporter M2J07_04305 PF00664 ABC transporter transmembrane region M2J07_04310 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M2J07_04315 PF06912 Protein of unknown function (DUF1275) M2J07_04320 PF00375 Sodium:dicarboxylate symporter family M2J07_04335 PF08007 Cupin superfamily protein M2J07_04340 PF02545 Maf-like protein M2J07_04350 PF00162 Phosphoglycerate kinase M2J07_04360 PF01116 Fructose-bisphosphate aldolase class-II M2J07_04365 PF09312 SurA N-terminal domain M2J07_04365 PF00639 PPIC-type PPIASE domain M2J07_04370 PF04453 LPS transport system D M2J07_04370 PF03968 OstA-like protein M2J07_04375 PF01636 Phosphotransferase enzyme family M2J07_04380 PF00483 Nucleotidyl transferase M2J07_04385 PF02527 rRNA small subunit methyltransferase G M2J07_04390 PF13614 AAA domain M2J07_04395 PF17762 HTH domain found in ParB protein M2J07_04395 PF02195 ParB-like nuclease domain M2J07_04400 PF01618 MotA/TolQ/ExbB proton channel family M2J07_04410 PF00005 ABC transporter M2J07_04410 PF00664 ABC transporter transmembrane region M2J07_04415 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M2J07_04420 PF02348 Cytidylyltransferase M2J07_04425 PF09115 DNA polymerase III, delta subunit, C terminal M2J07_04435 PF01026 TatD related DNase M2J07_04450 PF07963 Prokaryotic N-terminal methylation motif M2J07_04450 PF02501 Type II secretion system (T2SS), protein I M2J07_04455 PF07963 Prokaryotic N-terminal methylation motif M2J07_04455 PF11612 Type II secretion system (T2SS), protein J M2J07_04460 PF03934 Type II secretion system (T2SS), protein K M2J07_04470 PF03167 Uracil DNA glycosylase superfamily M2J07_04480 PF14437 MafB19-like deaminase M2J07_04490 PF02224 Cytidylate kinase M2J07_04495 PF00575 S1 RNA binding domain M2J07_04500 PF00216 Bacterial DNA-binding protein M2J07_04510 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M2J07_04520 PF00743 Flavin-binding monooxygenase-like M2J07_04530 PF03969 AFG1-like ATPase M2J07_04535 PF01274 Malate synthase M2J07_04545 PF02472 Biopolymer transport protein ExbD/TolR M2J07_04550 PF02472 Biopolymer transport protein ExbD/TolR M2J07_04555 PF01618 MotA/TolQ/ExbB proton channel family M2J07_04565 PF07715 TonB-dependent Receptor Plug Domain M2J07_04565 PF00593 TonB dependent receptor M2J07_04585 PF01432 Peptidase family M3 M2J07_04590 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_04595 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_04600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M2J07_04600 PF00005 ABC transporter M2J07_04615 PF00459 Inositol monophosphatase family M2J07_04625 PF01649 Ribosomal protein S20 M2J07_04630 PF13460 NAD(P)H-binding M2J07_04635 PF03737 Aldolase/RraA M2J07_04655 PF02559 CarD-like/TRCF domain M2J07_04655 PF17757 UvrB interaction domain M2J07_04655 PF03461 TRCF domain M2J07_04655 PF00271 Helicase conserved C-terminal domain M2J07_04655 PF00270 DEAD/DEAH box helicase M2J07_04665 PF00211 Adenylate and Guanylate cyclase catalytic domain M2J07_04670 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_04675 PF00012 Hsp70 protein M2J07_04680 PF00226 DnaJ domain M2J07_04680 PF07743 HSCB C-terminal oligomerisation domain M2J07_04685 PF01521 Iron-sulphur cluster biosynthesis M2J07_04690 PF01592 NifU-like N terminal domain M2J07_04695 PF00266 Aminotransferase class-V M2J07_04700 PF02082 Transcriptional regulator M2J07_04715 PF00216 Bacterial DNA-binding protein M2J07_04720 PF00639 PPIC-type PPIASE domain M2J07_04720 PF09312 SurA N-terminal domain M2J07_04725 PF12852 Cupin M2J07_04725 PF12833 Helix-turn-helix domain M2J07_04730 PF00487 Fatty acid desaturase M2J07_04735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_04735 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_04735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_04740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_04740 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_04740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_04745 PF03109 ABC1 family M2J07_04755 PF04073 Aminoacyl-tRNA editing domain M2J07_04760 PF04183 IucA / IucC family M2J07_04760 PF06276 Ferric iron reductase FhuF-like transporter M2J07_04765 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M2J07_04770 PF07690 Major Facilitator Superfamily M2J07_04775 PF04183 IucA / IucC family M2J07_04775 PF06276 Ferric iron reductase FhuF-like transporter M2J07_04780 PF04183 IucA / IucC family M2J07_04780 PF06276 Ferric iron reductase FhuF-like transporter M2J07_04795 PF07715 TonB-dependent Receptor Plug Domain M2J07_04795 PF00593 TonB dependent receptor M2J07_04820 PF13419 Haloacid dehalogenase-like hydrolase M2J07_04830 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M2J07_04835 PF02277 Phosphoribosyltransferase M2J07_04850 PF02654 Cobalamin-5-phosphate synthase M2J07_04855 PF00793 DAHP synthetase I family M2J07_04860 PF01925 Sulfite exporter TauE/SafE M2J07_04880 PF00593 TonB dependent receptor M2J07_04880 PF07715 TonB-dependent Receptor Plug Domain M2J07_04885 PF02684 Lipid-A-disaccharide synthetase M2J07_04895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M2J07_04900 PF00005 ABC transporter M2J07_04940 PF01230 HIT domain M2J07_04970 PF08241 Methyltransferase domain M2J07_04975 PF00561 alpha/beta hydrolase fold M2J07_04980 PF01053 Cys/Met metabolism PLP-dependent enzyme M2J07_04990 PF02575 YbaB/EbfC DNA-binding family M2J07_04995 PF02132 RecR protein M2J07_04995 PF13662 Toprim domain M2J07_05000 PF01612 3'-5' exonuclease M2J07_05000 PF00570 HRDC domain M2J07_05020 PF05166 YcgL domain M2J07_05030 PF00004 ATPase family associated with various cellular activities (AAA) M2J07_05030 PF17862 AAA+ lid domain M2J07_05030 PF01434 Peptidase family M41 M2J07_05040 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_05045 PF05175 Methyltransferase small domain M2J07_05050 PF01264 Chorismate synthase M2J07_05055 PF00990 Diguanylate cyclase, GGDEF domain M2J07_05055 PF08448 PAS fold M2J07_05070 PF04055 Radical SAM superfamily M2J07_05075 PF00676 Dehydrogenase E1 component M2J07_05080 PF02779 Transketolase, pyrimidine binding domain M2J07_05080 PF02780 Transketolase, C-terminal domain M2J07_05085 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M2J07_05085 PF00364 Biotin-requiring enzyme M2J07_05085 PF02817 e3 binding domain M2J07_05090 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_05090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2J07_05095 PF00106 short chain dehydrogenase M2J07_05100 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_05100 PF00107 Zinc-binding dehydrogenase M2J07_05105 PF01062 Bestrophin, RFP-TM, chloride channel M2J07_05110 PF00158 Sigma-54 interaction domain M2J07_05110 PF00072 Response regulator receiver domain M2J07_05110 PF02954 Bacterial regulatory protein, Fis family M2J07_05115 PF00753 Metallo-beta-lactamase superfamily M2J07_05115 PF04273 Putative phosphatase (DUF442) M2J07_05130 PF01925 Sulfite exporter TauE/SafE M2J07_05145 PF06445 GyrI-like small molecule binding domain M2J07_05145 PF12833 Helix-turn-helix domain M2J07_05150 PF01638 HxlR-like helix-turn-helix M2J07_05155 PF02525 Flavodoxin-like fold M2J07_05165 PF07702 UTRA domain M2J07_05165 PF00392 Bacterial regulatory proteins, gntR family M2J07_05180 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M2J07_05185 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_05190 PF00005 ABC transporter M2J07_05205 PF00083 Sugar (and other) transporter M2J07_05210 PF07715 TonB-dependent Receptor Plug Domain M2J07_05210 PF00593 TonB dependent receptor M2J07_05215 PF10415 Fumarase C C-terminus M2J07_05215 PF00206 Lyase M2J07_05230 PF03466 LysR substrate binding domain M2J07_05230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_05235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_05235 PF03466 LysR substrate binding domain M2J07_05240 PF00108 Thiolase, N-terminal domain M2J07_05240 PF02803 Thiolase, C-terminal domain M2J07_05245 PF02667 Short chain fatty acid transporter M2J07_05250 PF01144 Coenzyme A transferase M2J07_05255 PF01144 Coenzyme A transferase M2J07_05260 PF03466 LysR substrate binding domain M2J07_05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_05285 PF06719 AraC-type transcriptional regulator N-terminus M2J07_05285 PF12833 Helix-turn-helix domain M2J07_05290 PF07690 Major Facilitator Superfamily M2J07_05295 PF01738 Dienelactone hydrolase family M2J07_05310 PF01613 Flavin reductase like domain M2J07_05320 PF14525 AraC-binding-like domain M2J07_05320 PF12833 Helix-turn-helix domain M2J07_05325 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_05325 PF00175 Oxidoreductase NAD-binding domain M2J07_05325 PF00970 Oxidoreductase FAD-binding domain M2J07_05330 PF00866 Ring hydroxylating beta subunit M2J07_05335 PF00355 Rieske [2Fe-2S] domain M2J07_05335 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M2J07_05340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_05340 PF03459 TOBE domain M2J07_05350 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_05355 PF00005 ABC transporter M2J07_05355 PF03459 TOBE domain M2J07_05360 PF00106 short chain dehydrogenase M2J07_05365 PF00550 Phosphopantetheine attachment site M2J07_05365 PF00857 Isochorismatase family M2J07_05375 PF00149 Calcineurin-like phosphoesterase M2J07_05380 PF13089 Polyphosphate kinase N-terminal domain M2J07_05380 PF17941 Polyphosphate kinase C-terminal domain 1 M2J07_05380 PF13090 Polyphosphate kinase C-terminal domain 2 M2J07_05380 PF02503 Polyphosphate kinase middle domain M2J07_05385 PF08042 PqqA family M2J07_05390 PF12706 Beta-lactamase superfamily domain M2J07_05395 PF03070 TENA/THI-4/PQQC family M2J07_05400 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M2J07_05405 PF04055 Radical SAM superfamily M2J07_05405 PF13186 Iron-sulfur cluster-binding domain M2J07_05410 PF01244 Membrane dipeptidase (Peptidase family M19) M2J07_05425 PF13091 PLD-like domain M2J07_05440 PF00199 Catalase M2J07_05450 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_05450 PF00107 Zinc-binding dehydrogenase M2J07_05460 PF00419 Fimbrial protein M2J07_05465 PF13953 PapC C-terminal domain M2J07_05465 PF13954 PapC N-terminal domain M2J07_05465 PF00577 Outer membrane usher protein M2J07_05470 PF02753 Pili assembly chaperone PapD, C-terminal domain M2J07_05470 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M2J07_05480 PF16970 Type-1 fimbrial protein, A M2J07_05500 PF01266 FAD dependent oxidoreductase M2J07_05515 PF01593 Flavin containing amine oxidoreductase M2J07_05520 PF00743 Flavin-binding monooxygenase-like M2J07_05525 PF12146 Serine aminopeptidase, S33 M2J07_05530 PF02321 Outer membrane efflux protein M2J07_05535 PF00873 AcrB/AcrD/AcrF family M2J07_05540 PF00529 HlyD membrane-fusion protein of T1SS M2J07_05540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M2J07_05545 PF00072 Response regulator receiver domain M2J07_05545 PF00486 Transcriptional regulatory protein, C terminal M2J07_05550 PF00512 His Kinase A (phospho-acceptor) domain M2J07_05550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_05550 PF00672 HAMP domain M2J07_05550 PF16527 Two-component sensor protein CpxA, periplasmic domain M2J07_05560 PF12833 Helix-turn-helix domain M2J07_05560 PF02311 AraC-like ligand binding domain M2J07_05565 PF12146 Serine aminopeptidase, S33 M2J07_05615 PF04607 Region found in RelA / SpoT proteins M2J07_05615 PF13291 ACT domain M2J07_05615 PF02824 TGS domain M2J07_05625 PF01975 Survival protein SurE M2J07_05650 PF07690 Major Facilitator Superfamily M2J07_05655 PF13533 Biotin-lipoyl like M2J07_05660 PF01425 Amidase M2J07_05665 PF00196 Bacterial regulatory proteins, luxR family M2J07_05740 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M2J07_05745 PF14572 Phosphoribosyl synthetase-associated domain M2J07_05745 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M2J07_05765 PF00005 ABC transporter M2J07_05770 PF01032 FecCD transport family M2J07_05780 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_05780 PF00107 Zinc-binding dehydrogenase M2J07_05795 PF06719 AraC-type transcriptional regulator N-terminus M2J07_05795 PF12833 Helix-turn-helix domain M2J07_05800 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M2J07_05800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M2J07_05805 PF07690 Major Facilitator Superfamily M2J07_05810 PF01370 NAD dependent epimerase/dehydratase family M2J07_05815 PF03466 LysR substrate binding domain M2J07_05815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_05825 PF00920 Dehydratase family M2J07_05830 PF00171 Aldehyde dehydrogenase family M2J07_05845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M2J07_05845 PF00529 HlyD membrane-fusion protein of T1SS M2J07_05875 PF03737 Aldolase/RraA M2J07_05880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M2J07_05880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M2J07_05880 PF01842 ACT domain M2J07_05885 PF07690 Major Facilitator Superfamily M2J07_05905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_05905 PF03466 LysR substrate binding domain M2J07_05915 PF08450 SMP-30/Gluconolactonase/LRE-like region M2J07_05920 PF00392 Bacterial regulatory proteins, gntR family M2J07_05920 PF07702 UTRA domain M2J07_05930 PF04909 Amidohydrolase M2J07_05935 PF07690 Major Facilitator Superfamily M2J07_05950 PF13018 Extended Signal Peptide of Type V secretion system M2J07_05950 PF13332 Hemagglutinin repeat M2J07_05950 PF05860 haemagglutination activity domain M2J07_05950 PF04829 Pre-toxin domain with VENN motif M2J07_05955 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M2J07_05955 PF08479 POTRA domain, ShlB-type M2J07_05955 PF17287 POTRA domain M2J07_05965 PF07687 Peptidase dimerisation domain M2J07_05965 PF01546 Peptidase family M20/M25/M40 M2J07_05975 PF00999 Sodium/hydrogen exchanger family M2J07_05975 PF02254 TrkA-N domain M2J07_05980 PF07995 Glucose / Sorbosone dehydrogenase M2J07_05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_05985 PF03466 LysR substrate binding domain M2J07_05990 PF00857 Isochorismatase family M2J07_06000 PF00440 Bacterial regulatory proteins, tetR family M2J07_06000 PF08359 YsiA-like protein, C-terminal region M2J07_06005 PF12706 Beta-lactamase superfamily domain M2J07_06015 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_06025 PF09278 MerR, DNA binding M2J07_06025 PF00376 MerR family regulatory protein M2J07_06030 PF01872 RibD C-terminal domain M2J07_06035 PF00106 short chain dehydrogenase M2J07_06040 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_06040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M2J07_06045 PF01047 MarR family M2J07_06050 PF07859 alpha/beta hydrolase fold M2J07_06065 PF00199 Catalase M2J07_06065 PF06628 Catalase-related immune-responsive M2J07_06070 PF00561 alpha/beta hydrolase fold M2J07_06080 PF00171 Aldehyde dehydrogenase family M2J07_06085 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_06085 PF00107 Zinc-binding dehydrogenase M2J07_06090 PF00474 Sodium:solute symporter family M2J07_06095 PF04341 Protein of unknown function, DUF485 M2J07_06100 PF00501 AMP-binding enzyme M2J07_06100 PF13193 AMP-binding enzyme C-terminal domain M2J07_06105 PF02954 Bacterial regulatory protein, Fis family M2J07_06105 PF06506 Propionate catabolism activator M2J07_06105 PF00158 Sigma-54 interaction domain M2J07_06115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_06115 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_06115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_06135 PF00171 Aldehyde dehydrogenase family M2J07_06145 PF07690 Major Facilitator Superfamily M2J07_06150 PF00920 Dehydratase family M2J07_06155 PF07729 FCD domain M2J07_06155 PF00392 Bacterial regulatory proteins, gntR family M2J07_06165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_06165 PF03466 LysR substrate binding domain M2J07_06170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M2J07_06170 PF13378 Enolase C-terminal domain-like M2J07_06175 PF02426 Muconolactone delta-isomerase M2J07_06180 PF00775 Dioxygenase M2J07_06180 PF04444 Catechol dioxygenase N terminus M2J07_06185 PF01144 Coenzyme A transferase M2J07_06190 PF01144 Coenzyme A transferase M2J07_06195 PF02803 Thiolase, C-terminal domain M2J07_06195 PF00108 Thiolase, N-terminal domain M2J07_06200 PF12146 Serine aminopeptidase, S33 M2J07_06205 PF01804 Penicillin amidase M2J07_06210 PF00171 Aldehyde dehydrogenase family M2J07_06220 PF02728 Copper amine oxidase, N3 domain M2J07_06220 PF02727 Copper amine oxidase, N2 domain M2J07_06220 PF07833 Copper amine oxidase N-terminal domain M2J07_06220 PF01179 Copper amine oxidase, enzyme domain M2J07_06225 PF02311 AraC-like ligand binding domain M2J07_06225 PF12833 Helix-turn-helix domain M2J07_06230 PF01613 Flavin reductase like domain M2J07_06235 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_06235 PF00175 Oxidoreductase NAD-binding domain M2J07_06250 PF00355 Rieske [2Fe-2S] domain M2J07_06250 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M2J07_06265 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M2J07_06270 PF01425 Amidase M2J07_06280 PF07690 Major Facilitator Superfamily M2J07_06290 PF00106 short chain dehydrogenase M2J07_06305 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_06305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_06305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_06310 PF03466 LysR substrate binding domain M2J07_06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_06315 PF09339 IclR helix-turn-helix domain M2J07_06315 PF01614 Bacterial transcriptional regulator M2J07_06320 PF00753 Metallo-beta-lactamase superfamily M2J07_06330 PF04143 Sulphur transport M2J07_06340 PF13360 PQQ-like domain M2J07_06340 PF01011 PQQ enzyme repeat M2J07_06345 PF04966 Carbohydrate-selective porin, OprB family M2J07_06350 PF05048 Periplasmic copper-binding protein (NosD) M2J07_06355 PF01487 Type I 3-dehydroquinase M2J07_06360 PF00775 Dioxygenase M2J07_06365 PF00775 Dioxygenase M2J07_06365 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M2J07_06370 PF02627 Carboxymuconolactone decarboxylase family M2J07_06375 PF07690 Major Facilitator Superfamily M2J07_06380 PF00561 alpha/beta hydrolase fold M2J07_06385 PF00206 Lyase M2J07_06385 PF10397 Adenylosuccinate lyase C-terminus M2J07_06390 PF00108 Thiolase, N-terminal domain M2J07_06390 PF02803 Thiolase, C-terminal domain M2J07_06395 PF01144 Coenzyme A transferase M2J07_06400 PF01144 Coenzyme A transferase M2J07_06405 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M2J07_06410 PF04977 Septum formation initiator M2J07_06415 PF04239 Protein of unknown function (DUF421) M2J07_06420 PF00113 Enolase, C-terminal TIM barrel domain M2J07_06420 PF03952 Enolase, N-terminal domain M2J07_06425 PF00793 DAHP synthetase I family M2J07_06430 PF00117 Glutamine amidotransferase class-I M2J07_06430 PF06418 CTP synthase N-terminus M2J07_06460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M2J07_06460 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_06475 PF00793 DAHP synthetase I family M2J07_06480 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M2J07_06485 PF00004 ATPase family associated with various cellular activities (AAA) M2J07_06485 PF07724 AAA domain (Cdc48 subfamily) M2J07_06485 PF17871 AAA lid domain M2J07_06485 PF02861 Clp amino terminal domain, pathogenicity island component M2J07_06485 PF10431 C-terminal, D2-small domain, of ClpB protein M2J07_06490 PF02617 ATP-dependent Clp protease adaptor protein ClpS M2J07_06500 PF01118 Semialdehyde dehydrogenase, NAD binding domain M2J07_06500 PF02774 Semialdehyde dehydrogenase, dimerisation domain M2J07_06515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M2J07_06520 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_06520 PF00585 C-terminal regulatory domain of Threonine dehydratase M2J07_06525 PF02080 TrkA-C domain M2J07_06525 PF02254 TrkA-N domain M2J07_06530 PF02386 Cation transport protein M2J07_06535 PF02253 Phospholipase A1 M2J07_06540 PF08367 Peptidase M16C associated M2J07_06540 PF00675 Insulinase (Peptidase family M16) M2J07_06540 PF05193 Peptidase M16 inactive domain M2J07_06545 PF07715 TonB-dependent Receptor Plug Domain M2J07_06545 PF00593 TonB dependent receptor M2J07_06550 PF00294 pfkB family carbohydrate kinase M2J07_06560 PF07290 Protein of unknown function (DUF1449) M2J07_06570 PF01654 Cytochrome bd terminal oxidase subunit I M2J07_06575 PF02322 Cytochrome bd terminal oxidase subunit II M2J07_06580 PF08173 Membrane bound YbgT-like protein M2J07_06595 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M2J07_06605 PF02881 SRP54-type protein, helical bundle domain M2J07_06605 PF00448 SRP54-type protein, GTPase domain M2J07_06630 PF00571 CBS domain M2J07_06630 PF00478 IMP dehydrogenase / GMP reductase domain M2J07_06635 PF00202 Aminotransferase class-III M2J07_06640 PF00462 Glutaredoxin M2J07_06650 PF03466 LysR substrate binding domain M2J07_06650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_06655 PF00557 Metallopeptidase family M24 M2J07_06660 PF05525 Branched-chain amino acid transport protein M2J07_06685 PF05524 PEP-utilising enzyme, N-terminal M2J07_06685 PF00391 PEP-utilising enzyme, mobile domain M2J07_06685 PF02896 PEP-utilising enzyme, TIM barrel domain M2J07_06685 PF00381 PTS HPr component phosphorylation site M2J07_06685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M2J07_06690 PF00294 pfkB family carbohydrate kinase M2J07_06695 PF02378 Phosphotransferase system, EIIC M2J07_06695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M2J07_06715 PF00563 EAL domain M2J07_06715 PF00990 Diguanylate cyclase, GGDEF domain M2J07_06715 PF03707 Bacterial signalling protein N terminal repeat M2J07_06725 PF07995 Glucose / Sorbosone dehydrogenase M2J07_06730 PF02586 SOS response associated peptidase (SRAP) M2J07_06735 PF13610 DDE domain M2J07_06740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M2J07_06740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M2J07_06750 PF02542 YgbB family M2J07_06760 PF01266 FAD dependent oxidoreductase M2J07_06780 PF00206 Lyase M2J07_06780 PF10415 Fumarase C C-terminus M2J07_06785 PF16363 GDP-mannose 4,6 dehydratase M2J07_06790 PF02635 DsrE/DsrF-like family M2J07_06810 PF00892 EamA-like transporter family M2J07_06815 PF00155 Aminotransferase class I and II M2J07_06815 PF00392 Bacterial regulatory proteins, gntR family M2J07_06820 PF01638 HxlR-like helix-turn-helix M2J07_06825 PF03454 MoeA C-terminal region (domain IV) M2J07_06825 PF03453 MoeA N-terminal region (domain I and II) M2J07_06825 PF00994 Probable molybdopterin binding domain M2J07_06830 PF01967 MoaC family M2J07_06830 PF00994 Probable molybdopterin binding domain M2J07_06835 PF02391 MoaE protein M2J07_06845 PF06463 Molybdenum Cofactor Synthesis C M2J07_06845 PF04055 Radical SAM superfamily M2J07_06850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M2J07_06850 PF01568 Molydopterin dinucleotide binding domain M2J07_06850 PF00384 Molybdopterin oxidoreductase M2J07_06855 PF12804 MobA-like NTP transferase domain M2J07_06860 PF01568 Molydopterin dinucleotide binding domain M2J07_06860 PF00384 Molybdopterin oxidoreductase M2J07_06860 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M2J07_06860 PF04324 BFD-like [2Fe-2S] binding domain M2J07_06865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M2J07_06865 PF18267 Rubredoxin NAD+ reductase C-terminal domain M2J07_06865 PF04324 BFD-like [2Fe-2S] binding domain M2J07_06865 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_06865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M2J07_06870 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_06870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M2J07_06870 PF18267 Rubredoxin NAD+ reductase C-terminal domain M2J07_06870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M2J07_06870 PF04324 BFD-like [2Fe-2S] binding domain M2J07_06870 PF13806 Rieske-like [2Fe-2S] domain M2J07_06880 PF00072 Response regulator receiver domain M2J07_06880 PF00486 Transcriptional regulatory protein, C terminal M2J07_06885 PF00005 ABC transporter M2J07_06895 PF13438 Domain of unknown function (DUF4113) M2J07_06895 PF00817 impB/mucB/samB family M2J07_06895 PF11799 impB/mucB/samB family C-terminal domain M2J07_06900 PF01220 Dehydroquinase class II M2J07_06905 PF00364 Biotin-requiring enzyme M2J07_06910 PF02785 Biotin carboxylase C-terminal domain M2J07_06910 PF00289 Biotin carboxylase, N-terminal domain M2J07_06910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M2J07_06920 PF12832 MFS_1 like family M2J07_07010 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system M2J07_07190 PF01555 DNA methylase M2J07_07290 PF01645 Conserved region in glutamate synthase M2J07_07305 PF01565 FAD binding domain M2J07_07305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M2J07_07310 PF01451 Low molecular weight phosphotyrosine protein phosphatase M2J07_07320 PF00465 Iron-containing alcohol dehydrogenase M2J07_07325 PF03061 Thioesterase superfamily M2J07_07330 PF05506 Domain of unknown function (DUF756) M2J07_07330 PF04185 Phosphoesterase family M2J07_07335 PF12169 DNA polymerase III subunits gamma and tau domain III M2J07_07335 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M2J07_07335 PF12170 DNA polymerase III tau subunit V interacting with alpha M2J07_07340 PF07690 Major Facilitator Superfamily M2J07_07350 PF00144 Beta-lactamase M2J07_07355 PF01575 MaoC like domain M2J07_07365 PF00108 Thiolase, N-terminal domain M2J07_07365 PF02803 Thiolase, C-terminal domain M2J07_07375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_07375 PF03466 LysR substrate binding domain M2J07_07380 PF00923 Transaldolase/Fructose-6-phosphate aldolase M2J07_07385 PF01810 LysE type translocator M2J07_07390 PF01037 Lrp/AsnC ligand binding domain M2J07_07395 PF03594 Benzoate membrane transport protein M2J07_07400 PF02308 MgtC family M2J07_07405 PF00689 Cation transporting ATPase, C-terminus M2J07_07405 PF00690 Cation transporter/ATPase, N-terminus M2J07_07430 PF00582 Universal stress protein family M2J07_07435 PF12848 ABC transporter M2J07_07435 PF00005 ABC transporter M2J07_07455 PF07715 TonB-dependent Receptor Plug Domain M2J07_07455 PF00593 TonB dependent receptor M2J07_07490 PF00924 Mechanosensitive ion channel M2J07_07495 PF07715 TonB-dependent Receptor Plug Domain M2J07_07495 PF00593 TonB dependent receptor M2J07_07500 PF00440 Bacterial regulatory proteins, tetR family M2J07_07515 PF01037 Lrp/AsnC ligand binding domain M2J07_07520 PF01817 Chorismate mutase type II M2J07_07530 PF00106 short chain dehydrogenase M2J07_07540 PF11940 Domain of unknown function (DUF3458) Ig-like fold M2J07_07540 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M2J07_07540 PF01433 Peptidase family M1 domain M2J07_07555 PF02110 Hydroxyethylthiazole kinase family M2J07_07560 PF06445 GyrI-like small molecule binding domain M2J07_07570 PF14493 Helix-turn-helix domain M2J07_07570 PF05970 PIF1-like helicase M2J07_07575 PF00465 Iron-containing alcohol dehydrogenase M2J07_07590 PF00171 Aldehyde dehydrogenase family M2J07_07595 PF13520 Amino acid permease M2J07_07600 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M2J07_07605 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M2J07_07610 PF00117 Glutamine amidotransferase class-I M2J07_07610 PF00958 GMP synthase C terminal domain M2J07_07610 PF02540 NAD synthase M2J07_07615 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M2J07_07615 PF00749 tRNA synthetases class I (E and Q), catalytic domain M2J07_07620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M2J07_07625 PF00149 Calcineurin-like phosphoesterase M2J07_07635 PF00881 Nitroreductase family M2J07_07645 PF17209 Hfq protein M2J07_07655 PF01119 DNA mismatch repair protein, C-terminal domain M2J07_07655 PF08676 MutL C terminal dimerisation domain M2J07_07660 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M2J07_07665 PF01479 S4 domain M2J07_07665 PF00849 RNA pseudouridylate synthase M2J07_07680 PF01479 S4 domain M2J07_07680 PF00849 RNA pseudouridylate synthase M2J07_07690 PF04284 Protein of unknown function (DUF441) M2J07_07695 PF03466 LysR substrate binding domain M2J07_07695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_07710 PF07690 Major Facilitator Superfamily M2J07_07715 PF00520 Ion transport protein M2J07_07715 PF00027 Cyclic nucleotide-binding domain M2J07_07725 PF00330 Aconitase family (aconitate hydratase) M2J07_07725 PF11791 Aconitate B N-terminal domain M2J07_07725 PF06434 Aconitate hydratase 2 N-terminus M2J07_07740 PF01103 Surface antigen M2J07_07740 PF07244 Surface antigen variable number repeat M2J07_07740 PF17243 POTRA domain TamA domain 1 M2J07_07745 PF07690 Major Facilitator Superfamily M2J07_07750 PF03232 Ubiquinone biosynthesis protein COQ7 M2J07_07760 PF00120 Glutamine synthetase, catalytic domain M2J07_07765 PF00072 Response regulator receiver domain M2J07_07765 PF00486 Transcriptional regulatory protein, C terminal M2J07_07770 PF02702 Osmosensitive K+ channel His kinase sensor domain M2J07_07770 PF00512 His Kinase A (phospho-acceptor) domain M2J07_07770 PF13493 Domain of unknown function (DUF4118) M2J07_07770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_07775 PF02669 K+-transporting ATPase, c chain M2J07_07785 PF03814 Potassium-transporting ATPase A subunit M2J07_07800 PF03109 ABC1 family M2J07_07805 PF00899 ThiF family M2J07_07810 PF01613 Flavin reductase like domain M2J07_07815 PF00501 AMP-binding enzyme M2J07_07815 PF13193 AMP-binding enzyme C-terminal domain M2J07_07820 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_07820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_07820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_07825 PF00106 short chain dehydrogenase M2J07_07830 PF12833 Helix-turn-helix domain M2J07_07835 PF09084 NMT1/THI5 like M2J07_07840 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_07845 PF13847 Methyltransferase domain M2J07_07845 PF17827 PrmC N-terminal domain M2J07_07850 PF03462 PCRF domain M2J07_07850 PF00472 RF-1 domain M2J07_07860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_07860 PF03466 LysR substrate binding domain M2J07_07875 PF00296 Luciferase-like monooxygenase M2J07_07885 PF13994 PgaD-like protein M2J07_07890 PF00535 Glycosyl transferase family 2 M2J07_07895 PF14883 Hypothetical glycosyl hydrolase family 13 M2J07_07895 PF01522 Polysaccharide deacetylase M2J07_07905 PF03618 Kinase/pyrophosphorylase M2J07_07910 PF02896 PEP-utilising enzyme, TIM barrel domain M2J07_07910 PF00391 PEP-utilising enzyme, mobile domain M2J07_07910 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M2J07_07920 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M2J07_07920 PF06481 COX Aromatic Rich Motif M2J07_07925 PF00115 Cytochrome C and Quinol oxidase polypeptide I M2J07_07930 PF00510 Cytochrome c oxidase subunit III M2J07_07935 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M2J07_07940 PF01040 UbiA prenyltransferase family M2J07_07945 PF01250 Ribosomal protein S6 M2J07_07950 PF01084 Ribosomal protein S18 M2J07_07955 PF03948 Ribosomal protein L9, C-terminal domain M2J07_07955 PF01281 Ribosomal protein L9, N-terminal domain M2J07_07960 PF00772 DnaB-like helicase N terminal domain M2J07_07960 PF03796 DnaB-like helicase C terminal domain M2J07_07965 PF01168 Alanine racemase, N-terminal domain M2J07_07965 PF00842 Alanine racemase, C-terminal domain M2J07_07975 PF08379 Bacterial transglutaminase-like N-terminal region M2J07_07975 PF01841 Transglutaminase-like superfamily M2J07_07985 PF14403 Circularly permuted ATP-grasp type 2 M2J07_07995 PF13932 GidA associated domain M2J07_07995 PF01134 Glucose inhibited division protein A M2J07_08015 PF02954 Bacterial regulatory protein, Fis family M2J07_08020 PF01808 AICARFT/IMPCHase bienzyme M2J07_08020 PF02142 MGS-like domain M2J07_08025 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M2J07_08025 PF02843 Phosphoribosylglycinamide synthetase, C domain M2J07_08025 PF02844 Phosphoribosylglycinamide synthetase, N domain M2J07_08030 PF03180 NLPA lipoprotein M2J07_08035 PF00005 ABC transporter M2J07_08035 PF09383 NIL domain M2J07_08040 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_08045 PF00753 Metallo-beta-lactamase superfamily M2J07_08045 PF16123 Hydroxyacylglutathione hydrolase C-terminus M2J07_08055 PF00375 Sodium:dicarboxylate symporter family M2J07_08075 PF07995 Glucose / Sorbosone dehydrogenase M2J07_08080 PF00892 EamA-like transporter family M2J07_08085 PF01177 Asp/Glu/Hydantoin racemase M2J07_08095 PF02470 MlaD protein M2J07_08100 PF04403 Paraquat-inducible protein A M2J07_08110 PF06826 Predicted Permease Membrane Region M2J07_08110 PF02080 TrkA-C domain M2J07_08115 PF00155 Aminotransferase class I and II M2J07_08140 PF08946 Osmosensory transporter coiled coil M2J07_08140 PF00083 Sugar (and other) transporter M2J07_08190 PF00392 Bacterial regulatory proteins, gntR family M2J07_08190 PF07729 FCD domain M2J07_08200 PF03616 Sodium/glutamate symporter M2J07_08205 PF00561 alpha/beta hydrolase fold M2J07_08230 PF04076 Bacterial OB fold (BOF) protein M2J07_08260 PF00324 Amino acid permease M2J07_08265 PF00171 Aldehyde dehydrogenase family M2J07_08270 PF00202 Aminotransferase class-III M2J07_08275 PF03466 LysR substrate binding domain M2J07_08275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_08300 PF00069 Protein kinase domain M2J07_08320 PF00814 Glycoprotease family M2J07_08325 PF01165 Ribosomal protein S21 M2J07_08330 PF09424 Yqey-like protein M2J07_08335 PF01435 Peptidase family M48 M2J07_08340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M2J07_08340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M2J07_08355 PF00156 Phosphoribosyl transferase domain M2J07_08360 PF02674 Colicin V production protein M2J07_08365 PF01180 Dihydroorotate dehydrogenase M2J07_08385 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M2J07_08385 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M2J07_08390 PF00881 Nitroreductase family M2J07_08400 PF00271 Helicase conserved C-terminal domain M2J07_08400 PF00270 DEAD/DEAH box helicase M2J07_08405 PF00313 'Cold-shock' DNA-binding domain M2J07_08420 PF04545 Sigma-70, region 4 M2J07_08420 PF00140 Sigma-70 factor, region 1.2 M2J07_08420 PF04542 Sigma-70 region 2 M2J07_08425 PF04241 Protein of unknown function (DUF423) M2J07_08435 PF05690 Thiazole biosynthesis protein ThiG M2J07_08445 PF03883 Peroxide stress protein YaaA M2J07_08455 PF12706 Beta-lactamase superfamily domain M2J07_08460 PF07687 Peptidase dimerisation domain M2J07_08460 PF01546 Peptidase family M20/M25/M40 M2J07_08470 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M2J07_08475 PF01842 ACT domain M2J07_08475 PF01817 Chorismate mutase type II M2J07_08475 PF00800 Prephenate dehydratase M2J07_08480 PF00756 Putative esterase M2J07_08485 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_08485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_08485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_08490 PF00375 Sodium:dicarboxylate symporter family M2J07_08495 PF00591 Glycosyl transferase family, a/b domain M2J07_08495 PF02885 Glycosyl transferase family, helical bundle domain M2J07_08500 PF07023 Protein of unknown function (DUF1315) M2J07_08505 PF01513 ATP-NAD kinase M2J07_08510 PF00912 Transglycosylase M2J07_08510 PF00905 Penicillin binding protein transpeptidase domain M2J07_08510 PF14814 Bifunctional transglycosylase second domain M2J07_08520 PF00293 NUDIX domain M2J07_08530 PF00512 His Kinase A (phospho-acceptor) domain M2J07_08530 PF08521 Two-component sensor kinase N-terminal M2J07_08530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_08535 PF00486 Transcriptional regulatory protein, C terminal M2J07_08535 PF00072 Response regulator receiver domain M2J07_08545 PF00437 Type II/IV secretion system protein M2J07_08545 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M2J07_08555 PF01980 tRNA-methyltransferase O M2J07_08555 PF18389 TrmO C-terminal domain M2J07_08560 PF00970 Oxidoreductase FAD-binding domain M2J07_08560 PF00175 Oxidoreductase NAD-binding domain M2J07_08565 PF02567 Phenazine biosynthesis-like protein M2J07_08570 PF00392 Bacterial regulatory proteins, gntR family M2J07_08570 PF00155 Aminotransferase class I and II M2J07_08575 PF16325 Peptidase family U32 C-terminal domain M2J07_08575 PF01136 Peptidase family U32 M2J07_08580 PF00037 4Fe-4S binding domain M2J07_08585 PF00893 Small Multidrug Resistance protein M2J07_08590 PF00005 ABC transporter M2J07_08595 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_08600 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_08620 PF03466 LysR substrate binding domain M2J07_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_08625 PF13533 Biotin-lipoyl like M2J07_08630 PF00873 AcrB/AcrD/AcrF family M2J07_08635 PF02321 Outer membrane efflux protein M2J07_08640 PF00464 Serine hydroxymethyltransferase M2J07_08670 PF00005 ABC transporter M2J07_08675 PF01061 ABC-2 type transporter M2J07_08680 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M2J07_08680 PF14489 QueF-like protein M2J07_08690 PF01098 Cell cycle protein M2J07_08695 PF13406 Transglycosylase SLT domain M2J07_08700 PF03330 Lytic transglycolase M2J07_08700 PF05036 Sporulation related domain M2J07_08720 PF12833 Helix-turn-helix domain M2J07_08730 PF00889 Elongation factor TS M2J07_08735 PF00318 Ribosomal protein S2 M2J07_08740 PF00557 Metallopeptidase family M24 M2J07_08750 PF07690 Major Facilitator Superfamily M2J07_08760 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_08760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2J07_08765 PF04055 Radical SAM superfamily M2J07_08770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_08770 PF09317 Domain of unknown function (DUF1974) M2J07_08770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_08785 PF05221 S-adenosyl-L-homocysteine hydrolase M2J07_08785 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M2J07_08790 PF02219 Methylenetetrahydrofolate reductase M2J07_08795 PF04452 RNA methyltransferase M2J07_08800 PF00563 EAL domain M2J07_08800 PF00990 Diguanylate cyclase, GGDEF domain M2J07_08800 PF03707 Bacterial signalling protein N terminal repeat M2J07_08805 PF00390 Malic enzyme, N-terminal domain M2J07_08805 PF01515 Phosphate acetyl/butaryl transferase M2J07_08805 PF03949 Malic enzyme, NAD binding domain M2J07_08810 PF12627 Probable RNA and SrmB- binding site of polymerase A M2J07_08810 PF01743 Poly A polymerase head domain M2J07_08815 PF13180 PDZ domain M2J07_08820 PF01784 NIF3 (NGG1p interacting factor 3) M2J07_08825 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M2J07_08825 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M2J07_08860 PF01040 UbiA prenyltransferase family M2J07_08865 PF04345 Chorismate lyase M2J07_08870 PF00120 Glutamine synthetase, catalytic domain M2J07_08870 PF03951 Glutamine synthetase, beta-Grasp domain M2J07_08875 PF00854 POT family M2J07_08885 PF00117 Glutamine amidotransferase class-I M2J07_08890 PF11838 ERAP1-like C-terminal domain M2J07_08890 PF01433 Peptidase family M1 domain M2J07_08895 PF07715 TonB-dependent Receptor Plug Domain M2J07_08895 PF00593 TonB dependent receptor M2J07_08900 PF02885 Glycosyl transferase family, helical bundle domain M2J07_08900 PF00591 Glycosyl transferase family, a/b domain M2J07_08905 PF00218 Indole-3-glycerol phosphate synthase M2J07_08920 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M2J07_08920 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M2J07_08925 PF01799 [2Fe-2S] binding domain M2J07_08925 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_08930 PF01227 GTP cyclohydrolase I M2J07_08935 PF00144 Beta-lactamase M2J07_08950 PF05675 Protein of unknown function (DUF817) M2J07_08955 PF01208 Uroporphyrinogen decarboxylase (URO-D) M2J07_08965 PF00425 chorismate binding enzyme M2J07_08975 PF00975 Thioesterase domain M2J07_08980 PF00005 ABC transporter M2J07_08985 PF00005 ABC transporter M2J07_08995 PF00282 Pyridoxal-dependent decarboxylase conserved domain M2J07_09000 PF00857 Isochorismatase family M2J07_09000 PF00550 Phosphopantetheine attachment site M2J07_09005 PF00501 AMP-binding enzyme M2J07_09005 PF13193 AMP-binding enzyme C-terminal domain M2J07_09010 PF00501 AMP-binding enzyme M2J07_09010 PF00668 Condensation domain M2J07_09010 PF00550 Phosphopantetheine attachment site M2J07_09015 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M2J07_09020 PF07715 TonB-dependent Receptor Plug Domain M2J07_09020 PF00593 TonB dependent receptor M2J07_09025 PF01497 Periplasmic binding protein M2J07_09030 PF00005 ABC transporter M2J07_09035 PF01032 FecCD transport family M2J07_09040 PF01032 FecCD transport family M2J07_09045 PF00668 Condensation domain M2J07_09045 PF13193 AMP-binding enzyme C-terminal domain M2J07_09045 PF00501 AMP-binding enzyme M2J07_09045 PF00550 Phosphopantetheine attachment site M2J07_09045 PF00975 Thioesterase domain M2J07_09050 PF00501 AMP-binding enzyme M2J07_09050 PF13193 AMP-binding enzyme C-terminal domain M2J07_09050 PF00668 Condensation domain M2J07_09050 PF00550 Phosphopantetheine attachment site M2J07_09060 PF13309 HTH domain M2J07_09060 PF08348 YheO-like PAS domain M2J07_09070 PF02678 Pirin M2J07_09070 PF17954 Quercetinase C-terminal cupin domain M2J07_09090 PF00440 Bacterial regulatory proteins, tetR family M2J07_09095 PF00550 Phosphopantetheine attachment site M2J07_09095 PF00698 Acyl transferase domain M2J07_09095 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_09095 PF08990 Erythronolide synthase docking M2J07_09095 PF09277 Erythronolide synthase, docking M2J07_09095 PF16197 Ketoacyl-synthetase C-terminal extension M2J07_09095 PF00109 Beta-ketoacyl synthase, N-terminal domain M2J07_09095 PF02801 Beta-ketoacyl synthase, C-terminal domain M2J07_09095 PF08659 KR domain M2J07_09095 PF14765 Polyketide synthase dehydratase M2J07_09100 PF13378 Enolase C-terminal domain-like M2J07_09100 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M2J07_09105 PF00083 Sugar (and other) transporter M2J07_09110 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M2J07_09120 PF00892 EamA-like transporter family M2J07_09140 PF01266 FAD dependent oxidoreductase M2J07_09140 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M2J07_09145 PF18113 Rubredoxin binding C-terminal domain M2J07_09145 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_09155 PF00171 Aldehyde dehydrogenase family M2J07_09160 PF00355 Rieske [2Fe-2S] domain M2J07_09160 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M2J07_09165 PF02028 BCCT, betaine/carnitine/choline family transporter M2J07_09170 PF02028 BCCT, betaine/carnitine/choline family transporter M2J07_09175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_09175 PF03466 LysR substrate binding domain M2J07_09180 PF00324 Amino acid permease M2J07_09185 PF00171 Aldehyde dehydrogenase family M2J07_09200 PF17853 GGDEF-like domain M2J07_09200 PF06018 CodY GAF-like domain M2J07_09200 PF13556 PucR C-terminal helix-turn-helix domain M2J07_09235 PF04328 Selenoprotein, putative M2J07_09240 PF02554 Carbon starvation protein CstA M2J07_09240 PF13722 5TM C-terminal transporter carbon starvation CstA M2J07_09245 PF01132 Elongation factor P (EF-P) OB domain M2J07_09245 PF08207 Elongation factor P (EF-P) KOW-like domain M2J07_09245 PF09285 Elongation factor P, C-terminal M2J07_09250 PF04055 Radical SAM superfamily M2J07_09265 PF01197 Ribosomal protein L31 M2J07_09270 PF13593 SBF-like CPA transporter family (DUF4137) M2J07_09275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M2J07_09280 PF07690 Major Facilitator Superfamily M2J07_09285 PF05362 Lon protease (S16) C-terminal proteolytic domain M2J07_09285 PF13654 AAA domain M2J07_09290 PF03466 LysR substrate binding domain M2J07_09290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_09295 PF01551 Peptidase family M23 M2J07_09295 PF01476 LysM domain M2J07_09300 PF01975 Survival protein SurE M2J07_09315 PF00768 D-alanyl-D-alanine carboxypeptidase M2J07_09315 PF07943 Penicillin-binding protein 5, C-terminal domain M2J07_09320 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_09325 PF00293 NUDIX domain M2J07_09325 PF13344 Haloacid dehalogenase-like hydrolase M2J07_09335 PF04356 Protein of unknown function (DUF489) M2J07_09340 PF00206 Lyase M2J07_09340 PF08328 Adenylosuccinate lyase C-terminal M2J07_09355 PF08496 Peptidase family S49 N-terminal M2J07_09355 PF01343 Peptidase family S49 M2J07_09360 PF00005 ABC transporter M2J07_09365 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_09370 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_09375 PF12849 PBP superfamily domain M2J07_09380 PF00324 Amino acid permease M2J07_09385 PF00205 Thiamine pyrophosphate enzyme, central domain M2J07_09385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M2J07_09385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M2J07_09390 PF01037 Lrp/AsnC ligand binding domain M2J07_09395 PF00171 Aldehyde dehydrogenase family M2J07_09400 PF00282 Pyridoxal-dependent decarboxylase conserved domain M2J07_09405 PF00202 Aminotransferase class-III M2J07_09415 PF17754 MftR C-terminal domain M2J07_09415 PF00440 Bacterial regulatory proteins, tetR family M2J07_09425 PF00487 Fatty acid desaturase M2J07_09430 PF00175 Oxidoreductase NAD-binding domain M2J07_09430 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_09430 PF00970 Oxidoreductase FAD-binding domain M2J07_09435 PF00440 Bacterial regulatory proteins, tetR family M2J07_09445 PF18339 RapA N-terminal Tudor like domain 1 M2J07_09445 PF18337 RapA N-terminal Tudor like domain M2J07_09445 PF00176 SNF2 family N-terminal domain M2J07_09445 PF12137 RNA polymerase recycling family C-terminal M2J07_09445 PF00271 Helicase conserved C-terminal domain M2J07_09450 PF00849 RNA pseudouridylate synthase M2J07_09460 PF00202 Aminotransferase class-III M2J07_09465 PF02581 Thiamine monophosphate synthase M2J07_09490 PF00675 Insulinase (Peptidase family M16) M2J07_09490 PF05193 Peptidase M16 inactive domain M2J07_09495 PF02567 Phenazine biosynthesis-like protein M2J07_09500 PF00375 Sodium:dicarboxylate symporter family M2J07_09505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_09505 PF03466 LysR substrate binding domain M2J07_09510 PF06779 Uncharacterised MFS-type transporter YbfB M2J07_09530 PF00180 Isocitrate/isopropylmalate dehydrogenase M2J07_09535 PF00849 RNA pseudouridylate synthase M2J07_09540 PF03971 Monomeric isocitrate dehydrogenase M2J07_09550 PF07943 Penicillin-binding protein 5, C-terminal domain M2J07_09550 PF00768 D-alanyl-D-alanine carboxypeptidase M2J07_09555 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_09560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M2J07_09565 PF03441 FAD binding domain of DNA photolyase M2J07_09565 PF00875 DNA photolyase M2J07_09595 PF02350 UDP-N-acetylglucosamine 2-epimerase M2J07_09610 PF03060 Nitronate monooxygenase M2J07_09615 PF01207 Dihydrouridine synthase (Dus) M2J07_09620 PF07759 Protein of unknown function (DUF1615) M2J07_09630 PF00696 Amino acid kinase family M2J07_09630 PF01472 PUA domain M2J07_09635 PF01018 GTP1/OBG M2J07_09635 PF01926 50S ribosome-binding GTPase M2J07_09650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M2J07_09650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M2J07_09655 PF00892 EamA-like transporter family M2J07_09665 PF17757 UvrB interaction domain M2J07_09665 PF02151 UvrB/uvrC motif M2J07_09665 PF12344 Ultra-violet resistance protein B M2J07_09665 PF00271 Helicase conserved C-terminal domain M2J07_09665 PF04851 Type III restriction enzyme, res subunit M2J07_09675 PF17151 Periplasmic sensor domain M2J07_09675 PF00990 Diguanylate cyclase, GGDEF domain M2J07_09685 PF00155 Aminotransferase class I and II M2J07_09715 PF00106 short chain dehydrogenase M2J07_09720 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M2J07_09725 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M2J07_09730 PF02565 Recombination protein O C terminal M2J07_09730 PF11967 Recombination protein O N terminal M2J07_09740 PF01926 50S ribosome-binding GTPase M2J07_09740 PF07650 KH domain M2J07_09745 PF00035 Double-stranded RNA binding motif M2J07_09745 PF14622 Ribonuclease-III-like M2J07_09755 PF10502 Signal peptidase, peptidase S26 M2J07_09760 PF00679 Elongation factor G C-terminus M2J07_09760 PF00009 Elongation factor Tu GTP binding domain M2J07_09760 PF03144 Elongation factor Tu domain 2 M2J07_09760 PF06421 GTP-binding protein LepA C-terminus M2J07_09770 PF13180 PDZ domain M2J07_09775 PF02910 Fumarate reductase flavoprotein C-term M2J07_09775 PF00890 FAD binding domain M2J07_09785 PF02223 Thymidylate kinase M2J07_09790 PF02618 YceG-like family M2J07_09795 PF01063 Amino-transferase class IV M2J07_09810 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_09815 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_09820 PF00005 ABC transporter M2J07_09820 PF12857 TOBE-like domain M2J07_09825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_09825 PF03466 LysR substrate binding domain M2J07_09835 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M2J07_09835 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_09835 PF14602 Hexapeptide repeat of succinyl-transferase M2J07_09845 PF06508 Queuosine biosynthesis protein QueC M2J07_09860 PF00578 AhpC/TSA family M2J07_09870 PF01467 Cytidylyltransferase-like M2J07_09870 PF00293 NUDIX domain M2J07_09875 PF00378 Enoyl-CoA hydratase/isomerase M2J07_09880 PF01784 NIF3 (NGG1p interacting factor 3) M2J07_09885 PF07690 Major Facilitator Superfamily M2J07_09890 PF02769 AIR synthase related protein, C-terminal domain M2J07_09890 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M2J07_09890 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M2J07_09895 PF01966 HD domain M2J07_09900 PF01330 RuvA N terminal domain M2J07_09900 PF07499 RuvA, C-terminal domain M2J07_09905 PF17864 RuvB AAA lid domain M2J07_09905 PF05491 RuvB C-terminal winged helix domain M2J07_09905 PF05496 Holliday junction DNA helicase RuvB P-loop domain M2J07_09910 PF07687 Peptidase dimerisation domain M2J07_09910 PF01546 Peptidase family M20/M25/M40 M2J07_09915 PF03061 Thioesterase superfamily M2J07_09920 PF01618 MotA/TolQ/ExbB proton channel family M2J07_09925 PF02472 Biopolymer transport protein ExbD/TolR M2J07_09935 PF07676 WD40-like Beta Propeller Repeat M2J07_09935 PF04052 TolB amino-terminal domain M2J07_09940 PF00691 OmpA family M2J07_09950 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M2J07_09955 PF00588 SpoU rRNA Methylase family M2J07_09955 PF08032 RNA 2'-O ribose methyltransferase substrate binding M2J07_09985 PF08299 Bacterial dnaA protein helix-turn-helix M2J07_09985 PF11638 DnaA N-terminal domain M2J07_09985 PF00308 Bacterial dnaA protein M2J07_09990 PF01594 AI-2E family transporter M2J07_09995 PF00586 AIR synthase related protein, N-terminal domain M2J07_09995 PF02769 AIR synthase related protein, C-terminal domain M2J07_10000 PF00551 Formyl transferase M2J07_10005 PF12697 Alpha/beta hydrolase family M2J07_10010 PF06965 Na+/H+ antiporter 1 M2J07_10010 PF01343 Peptidase family S49 M2J07_10020 PF03772 Competence protein M2J07_10020 PF13567 Domain of unknown function (DUF4131) M2J07_10020 PF00753 Metallo-beta-lactamase superfamily M2J07_10025 PF00005 ABC transporter M2J07_10030 PF02687 FtsX-like permease family M2J07_10030 PF12704 MacB-like periplasmic core domain M2J07_10040 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M2J07_10055 PF00266 Aminotransferase class-V M2J07_10065 PF13533 Biotin-lipoyl like M2J07_10085 PF00535 Glycosyl transferase family 2 M2J07_10100 PF00521 DNA gyrase/topoisomerase IV, subunit A M2J07_10100 PF03989 DNA gyrase C-terminal domain, beta-propeller M2J07_10105 PF01012 Electron transfer flavoprotein domain M2J07_10105 PF00766 Electron transfer flavoprotein FAD-binding domain M2J07_10110 PF01012 Electron transfer flavoprotein domain M2J07_10115 PF02899 Phage integrase, N-terminal SAM-like domain M2J07_10115 PF00589 Phage integrase family M2J07_10120 PF01810 LysE type translocator M2J07_10125 PF01678 Diaminopimelate epimerase M2J07_10130 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M2J07_10130 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M2J07_10140 PF00324 Amino acid permease M2J07_10145 PF18073 Rubredoxin metal binding domain M2J07_10155 PF00152 tRNA synthetases class II (D, K and N) M2J07_10160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M2J07_10160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M2J07_10160 PF11890 Domain of unknown function (DUF3410) M2J07_10165 PF06803 Protein of unknown function (DUF1232) M2J07_10170 PF02634 FdhD/NarQ family M2J07_10175 PF00384 Molybdopterin oxidoreductase M2J07_10180 PF02595 Glycerate kinase family M2J07_10195 PF00881 Nitroreductase family M2J07_10225 PF00550 Phosphopantetheine attachment site M2J07_10225 PF00668 Condensation domain M2J07_10225 PF00975 Thioesterase domain M2J07_10225 PF13193 AMP-binding enzyme C-terminal domain M2J07_10225 PF00501 AMP-binding enzyme M2J07_10240 PF01272 Transcription elongation factor, GreA/GreB, C-term M2J07_10240 PF03449 Transcription elongation factor, N-terminal M2J07_10245 PF00497 Bacterial extracellular solute-binding proteins, family 3 M2J07_10245 PF01464 Transglycosylase SLT domain M2J07_10255 PF01171 PP-loop family M2J07_10260 PF01464 Transglycosylase SLT domain M2J07_10265 PF01435 Peptidase family M48 M2J07_10275 PF00873 AcrB/AcrD/AcrF family M2J07_10280 PF03009 Glycerophosphoryl diester phosphodiesterase family M2J07_10285 PF00753 Metallo-beta-lactamase superfamily M2J07_10290 PF01219 Prokaryotic diacylglycerol kinase M2J07_10295 PF00118 TCP-1/cpn60 chaperonin family M2J07_10300 PF00166 Chaperonin 10 Kd subunit M2J07_10310 PF00149 Calcineurin-like phosphoesterase M2J07_10315 PF00781 Diacylglycerol kinase catalytic domain M2J07_10320 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M2J07_10320 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M2J07_10325 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M2J07_10325 PF01266 FAD dependent oxidoreductase M2J07_10330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M2J07_10330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M2J07_10335 PF00083 Sugar (and other) transporter M2J07_10350 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M2J07_10350 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M2J07_10365 PF09423 PhoD-like phosphatase M2J07_10365 PF16655 PhoD-like phosphatase, N-terminal domain M2J07_10385 PF00809 Pterin binding enzyme M2J07_10390 PF00004 ATPase family associated with various cellular activities (AAA) M2J07_10390 PF17862 AAA+ lid domain M2J07_10390 PF06480 FtsH Extracellular M2J07_10390 PF01434 Peptidase family M41 M2J07_10395 PF01728 FtsJ-like methyltransferase M2J07_10400 PF01985 CRS1 / YhbY (CRM) domain M2J07_10415 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M2J07_10415 PF00117 Glutamine amidotransferase class-I M2J07_10420 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M2J07_10420 PF02142 MGS-like domain M2J07_10420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M2J07_10425 PF01272 Transcription elongation factor, GreA/GreB, C-term M2J07_10425 PF03449 Transcription elongation factor, N-terminal M2J07_10430 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_10435 PF00582 Universal stress protein family M2J07_10440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M2J07_10450 PF09587 Bacterial capsule synthesis protein PGA_cap M2J07_10465 PF00999 Sodium/hydrogen exchanger family M2J07_10470 PF04228 Putative neutral zinc metallopeptidase M2J07_10475 PF05661 Protein of unknown function (DUF808) M2J07_10480 PF00579 tRNA synthetases class I (W and Y) M2J07_10485 PF02629 CoA binding domain M2J07_10485 PF00549 CoA-ligase M2J07_10490 PF00549 CoA-ligase M2J07_10490 PF08442 ATP-grasp domain M2J07_10495 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_10495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2J07_10500 PF02817 e3 binding domain M2J07_10500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M2J07_10500 PF00364 Biotin-requiring enzyme M2J07_10505 PF00676 Dehydrogenase E1 component M2J07_10505 PF02779 Transketolase, pyrimidine binding domain M2J07_10505 PF16870 2-oxoglutarate dehydrogenase C-terminal M2J07_10505 PF16078 2-oxoglutarate dehydrogenase N-terminus M2J07_10520 PF13085 2Fe-2S iron-sulfur cluster binding domain M2J07_10525 PF00890 FAD binding domain M2J07_10525 PF02910 Fumarate reductase flavoprotein C-term M2J07_10530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M2J07_10535 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M2J07_10540 PF00285 Citrate synthase, C-terminal domain M2J07_10550 PF17773 UPF0176 acylphosphatase like domain M2J07_10550 PF00581 Rhodanese-like domain M2J07_10570 PF03979 Sigma-70 factor, region 1.1 M2J07_10570 PF04542 Sigma-70 region 2 M2J07_10570 PF04539 Sigma-70 region 3 M2J07_10570 PF04545 Sigma-70, region 4 M2J07_10570 PF04546 Sigma-70, non-essential region M2J07_10570 PF00140 Sigma-70 factor, region 1.2 M2J07_10575 PF04359 Protein of unknown function (DUF493) M2J07_10580 PF03099 Biotin/lipoate A/B protein ligase family M2J07_10590 PF00465 Iron-containing alcohol dehydrogenase M2J07_10595 PF13520 Amino acid permease M2J07_10600 PF03358 NADPH-dependent FMN reductase M2J07_10605 PF01638 HxlR-like helix-turn-helix M2J07_10610 PF00588 SpoU rRNA Methylase family M2J07_10615 PF14824 Sirohaem biosynthesis protein central M2J07_10615 PF10414 Sirohaem synthase dimerisation region M2J07_10615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M2J07_10620 PF02403 Seryl-tRNA synthetase N-terminal domain M2J07_10620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M2J07_10630 PF03548 Outer membrane lipoprotein carrier protein LolA M2J07_10635 PF01016 Ribosomal L27 protein M2J07_10640 PF00829 Ribosomal prokaryotic L21 protein M2J07_10650 PF00348 Polyprenyl synthetase M2J07_10660 PF01569 PAP2 superfamily M2J07_10665 PF00529 HlyD membrane-fusion protein of T1SS M2J07_10665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M2J07_10670 PF00873 AcrB/AcrD/AcrF family M2J07_10675 PF02321 Outer membrane efflux protein M2J07_10680 PF01906 Putative heavy-metal-binding M2J07_10685 PF01906 Putative heavy-metal-binding M2J07_10705 PF08264 Anticodon-binding domain of tRNA M2J07_10705 PF00133 tRNA synthetases class I (I, L, M and V) M2J07_10705 PF10458 Valyl tRNA synthetase tRNA binding arm M2J07_10725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_10725 PF03466 LysR substrate binding domain M2J07_10730 PF00909 Ammonium Transporter Family M2J07_10740 PF00512 His Kinase A (phospho-acceptor) domain M2J07_10740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_10740 PF08521 Two-component sensor kinase N-terminal M2J07_10745 PF00486 Transcriptional regulatory protein, C terminal M2J07_10745 PF00072 Response regulator receiver domain M2J07_10750 PF00884 Sulfatase M2J07_10750 PF08019 Phosphoethanolamine transferase EptA/EptB M2J07_10775 PF01734 Patatin-like phospholipase M2J07_10785 PF01145 SPFH domain / Band 7 family M2J07_10790 PF04237 YjbR M2J07_10795 PF00348 Polyprenyl synthetase M2J07_10800 PF04303 PrpF protein M2J07_10805 PF00324 Amino acid permease M2J07_10815 PF01965 DJ-1/PfpI family M2J07_10820 PF02801 Beta-ketoacyl synthase, C-terminal domain M2J07_10820 PF09277 Erythronolide synthase, docking M2J07_10820 PF00550 Phosphopantetheine attachment site M2J07_10820 PF14765 Polyketide synthase dehydratase M2J07_10820 PF16197 Ketoacyl-synthetase C-terminal extension M2J07_10820 PF00698 Acyl transferase domain M2J07_10820 PF00109 Beta-ketoacyl synthase, N-terminal domain M2J07_10820 PF08659 KR domain M2J07_10820 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_10820 PF08990 Erythronolide synthase docking M2J07_10825 PF06719 AraC-type transcriptional regulator N-terminus M2J07_10825 PF12833 Helix-turn-helix domain M2J07_10830 PF02673 Bacitracin resistance protein BacA M2J07_10850 PF02525 Flavodoxin-like fold M2J07_10865 PF01507 Phosphoadenosine phosphosulfate reductase family M2J07_10870 PF06974 Protein of unknown function (DUF1298) M2J07_10870 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M2J07_10880 PF00575 S1 RNA binding domain M2J07_10880 PF10150 Ribonuclease E/G family M2J07_10885 PF02545 Maf-like protein M2J07_10890 PF04093 rod shape-determining protein MreD M2J07_10895 PF04085 rod shape-determining protein MreC M2J07_10905 PF02686 Glu-tRNAGln amidotransferase C subunit M2J07_10910 PF01425 Amidase M2J07_10915 PF02934 GatB/GatE catalytic domain M2J07_10915 PF02637 GatB domain M2J07_10945 PF05992 SbmA/BacA-like family M2J07_10950 PF13291 ACT domain M2J07_10950 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_10955 PF01734 Patatin-like phospholipase M2J07_10960 PF01235 Sodium:alanine symporter family M2J07_10975 PF00881 Nitroreductase family M2J07_10980 PF07690 Major Facilitator Superfamily M2J07_10985 PF12805 FUSC-like inner membrane protein yccS M2J07_10995 PF00258 Flavodoxin M2J07_10995 PF00175 Oxidoreductase NAD-binding domain M2J07_10995 PF00667 FAD binding domain M2J07_11035 PF03734 L,D-transpeptidase catalytic domain M2J07_11035 PF17969 L,D-transpeptidase C-terminal domain M2J07_11040 PF04304 Protein of unknown function (DUF454) M2J07_11050 PF08085 Entericidin EcnA/B family M2J07_11055 PF01546 Peptidase family M20/M25/M40 M2J07_11055 PF07687 Peptidase dimerisation domain M2J07_11065 PF01584 CheW-like domain M2J07_11065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_11065 PF01627 Hpt domain M2J07_11065 PF00072 Response regulator receiver domain M2J07_11070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M2J07_11070 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M2J07_11075 PF01584 CheW-like domain M2J07_11080 PF00072 Response regulator receiver domain M2J07_11085 PF00072 Response regulator receiver domain M2J07_11100 PF00873 AcrB/AcrD/AcrF family M2J07_11105 PF04073 Aminoacyl-tRNA editing domain M2J07_11105 PF03129 Anticodon binding domain M2J07_11105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M2J07_11110 PF07411 Domain of unknown function (DUF1508) M2J07_11115 PF03831 PhnA domain M2J07_11115 PF08274 PhnA Zinc-Ribbon M2J07_11120 PF04343 Protein of unknown function, DUF488 M2J07_11130 PF01571 Aminomethyltransferase folate-binding domain M2J07_11135 PF10411 Disulfide bond isomerase protein N-terminus M2J07_11135 PF13098 Thioredoxin-like domain M2J07_11145 PF03547 Membrane transport protein M2J07_11150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M2J07_11155 PF07715 TonB-dependent Receptor Plug Domain M2J07_11155 PF00593 TonB dependent receptor M2J07_11160 PF02245 Methylpurine-DNA glycosylase (MPG) M2J07_11165 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M2J07_11165 PF06827 Zinc finger found in FPG and IleRS M2J07_11165 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M2J07_11180 PF01741 Large-conductance mechanosensitive channel, MscL M2J07_11185 PF00679 Elongation factor G C-terminus M2J07_11185 PF00009 Elongation factor Tu GTP binding domain M2J07_11185 PF03144 Elongation factor Tu domain 2 M2J07_11190 PF00860 Permease family M2J07_11195 PF05175 Methyltransferase small domain M2J07_11195 PF08468 Methyltransferase small domain N-terminal M2J07_11200 PF00324 Amino acid permease M2J07_11205 PF01139 tRNA-splicing ligase RtcB M2J07_11215 PF00691 OmpA family M2J07_11215 PF13505 Outer membrane protein beta-barrel domain M2J07_11225 PF02803 Thiolase, C-terminal domain M2J07_11225 PF00108 Thiolase, N-terminal domain M2J07_11235 PF00893 Small Multidrug Resistance protein M2J07_11245 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M2J07_11245 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M2J07_11250 PF01011 PQQ enzyme repeat M2J07_11255 PF04966 Carbohydrate-selective porin, OprB family M2J07_11260 PF02515 CoA-transferase family III M2J07_11265 PF12833 Helix-turn-helix domain M2J07_11265 PF02311 AraC-like ligand binding domain M2J07_11270 PF00108 Thiolase, N-terminal domain M2J07_11270 PF02803 Thiolase, C-terminal domain M2J07_11275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M2J07_11275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M2J07_11275 PF00378 Enoyl-CoA hydratase/isomerase M2J07_11300 PF03006 Haemolysin-III related M2J07_11305 PF07690 Major Facilitator Superfamily M2J07_11305 PF00083 Sugar (and other) transporter M2J07_11315 PF01043 SecA preprotein cross-linking domain M2J07_11315 PF07517 SecA DEAD-like domain M2J07_11315 PF07516 SecA Wing and Scaffold domain M2J07_11315 PF02810 SEC-C motif M2J07_11320 PF10417 C-terminal domain of 1-Cys peroxiredoxin M2J07_11320 PF00578 AhpC/TSA family M2J07_11325 PF00753 Metallo-beta-lactamase superfamily M2J07_11340 PF02875 Mur ligase family, glutamate ligase domain M2J07_11340 PF08245 Mur ligase middle domain M2J07_11345 PF01039 Carboxyl transferase domain M2J07_11350 PF00290 Tryptophan synthase alpha chain M2J07_11375 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_11380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M2J07_11385 PF07715 TonB-dependent Receptor Plug Domain M2J07_11385 PF00593 TonB dependent receptor M2J07_11390 PF01923 Cobalamin adenosyltransferase M2J07_11410 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M2J07_11415 PF00072 Response regulator receiver domain M2J07_11415 PF00486 Transcriptional regulatory protein, C terminal M2J07_11420 PF00672 HAMP domain M2J07_11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_11420 PF00512 His Kinase A (phospho-acceptor) domain M2J07_11430 PF12806 Acetyl-CoA dehydrogenase C-terminal like M2J07_11430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_11430 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_11430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_11435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_11435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_11435 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_11435 PF12806 Acetyl-CoA dehydrogenase C-terminal like M2J07_11440 PF03466 LysR substrate binding domain M2J07_11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_11445 PF02798 Glutathione S-transferase, N-terminal domain M2J07_11445 PF00043 Glutathione S-transferase, C-terminal domain M2J07_11450 PF06146 Phosphate-starvation-inducible E M2J07_11470 PF00593 TonB dependent receptor M2J07_11470 PF07715 TonB-dependent Receptor Plug Domain M2J07_11480 PF02938 GAD domain M2J07_11480 PF01336 OB-fold nucleic acid binding domain M2J07_11480 PF00152 tRNA synthetases class II (D, K and N) M2J07_11485 PF17101 Stealth protein CR1, conserved region 1 M2J07_11485 PF11380 Stealth protein CR2, conserved region 2 M2J07_11485 PF17102 Stealth protein CR3, conserved region 3 M2J07_11510 PF13439 Glycosyltransferase Family 4 M2J07_11510 PF00534 Glycosyl transferases group 1 M2J07_11515 PF00535 Glycosyl transferase family 2 M2J07_11520 PF01522 Polysaccharide deacetylase M2J07_11535 PF01063 Amino-transferase class IV M2J07_11540 PF03710 Glutamate-ammonia ligase adenylyltransferase M2J07_11540 PF08335 GlnD PII-uridylyltransferase M2J07_11545 PF00512 His Kinase A (phospho-acceptor) domain M2J07_11545 PF07689 KaiB domain M2J07_11545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_11575 PF02547 Queuosine biosynthesis protein M2J07_11590 PF01702 Queuine tRNA-ribosyltransferase M2J07_11595 PF02699 Preprotein translocase subunit M2J07_11600 PF07549 SecD/SecF GG Motif M2J07_11600 PF13721 SecD export protein N-terminal TM region M2J07_11600 PF02355 Protein export membrane protein M2J07_11605 PF07549 SecD/SecF GG Motif M2J07_11605 PF02355 Protein export membrane protein M2J07_11610 PF04127 DNA / pantothenate metabolism flavoprotein M2J07_11610 PF02441 Flavoprotein M2J07_11615 PF04002 RadC-like JAB domain M2J07_11620 PF01062 Bestrophin, RFP-TM, chloride channel M2J07_11625 PF02811 PHP domain M2J07_11630 PF04279 Intracellular septation protein A M2J07_11635 PF03795 YCII-related domain M2J07_11645 PF01266 FAD dependent oxidoreductase M2J07_11645 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M2J07_11655 PF04461 Protein of unknown function (DUF520) M2J07_11665 PF03061 Thioesterase superfamily M2J07_11670 PF00085 Thioredoxin M2J07_11675 PF00561 alpha/beta hydrolase fold M2J07_11680 PF00753 Metallo-beta-lactamase superfamily M2J07_11680 PF04273 Putative phosphatase (DUF442) M2J07_11690 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_11690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2J07_11725 PF17152 Periplasmic sensor domain M2J07_11725 PF00990 Diguanylate cyclase, GGDEF domain M2J07_11730 PF00691 OmpA family M2J07_11730 PF01389 OmpA-like transmembrane domain M2J07_11735 PF00149 Calcineurin-like phosphoesterase M2J07_11735 PF10518 TAT (twin-arginine translocation) pathway signal sequence M2J07_11740 PF13091 PLD-like domain M2J07_11750 PF16360 GTP-binding GTPase Middle Region M2J07_11750 PF13167 GTP-binding GTPase N-terminal M2J07_11750 PF01926 50S ribosome-binding GTPase M2J07_11775 PF00149 Calcineurin-like phosphoesterase M2J07_11780 PF00398 Ribosomal RNA adenine dimethylase M2J07_11785 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M2J07_11790 PF00572 Ribosomal protein L13 M2J07_11795 PF00380 Ribosomal protein S9/S16 M2J07_11800 PF00043 Glutathione S-transferase, C-terminal domain M2J07_11800 PF13417 Glutathione S-transferase, N-terminal domain M2J07_11805 PF04386 Stringent starvation protein B M2J07_11815 PF02785 Biotin carboxylase C-terminal domain M2J07_11815 PF00289 Biotin carboxylase, N-terminal domain M2J07_11815 PF00364 Biotin-requiring enzyme M2J07_11815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M2J07_11825 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_11825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_11825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_11830 PF01039 Carboxyl transferase domain M2J07_11845 PF00440 Bacterial regulatory proteins, tetR family M2J07_11845 PF17932 Tetracyclin repressor-like, C-terminal domain M2J07_11850 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_11850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_11850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_11895 PF01066 CDP-alcohol phosphatidyltransferase M2J07_11900 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M2J07_11920 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M2J07_11920 PF00056 lactate/malate dehydrogenase, NAD binding domain M2J07_11930 PF01551 Peptidase family M23 M2J07_11930 PF10145 Phage-related minor tail protein M2J07_11930 PF01464 Transglycosylase SLT domain M2J07_11935 PF04055 Radical SAM superfamily M2J07_11935 PF01938 TRAM domain M2J07_11935 PF00919 Uncharacterized protein family UPF0004 M2J07_11940 PF02562 PhoH-like protein M2J07_11945 PF02130 Uncharacterized protein family UPF0054 M2J07_11970 PF03358 NADPH-dependent FMN reductase M2J07_11975 PF03631 Virulence factor BrkB M2J07_11980 PF00892 EamA-like transporter family M2J07_11985 PF12833 Helix-turn-helix domain M2J07_11990 PF01557 Fumarylacetoacetate (FAA) hydrolase family M2J07_12035 PF17876 Cold shock domain M2J07_12035 PF08461 Ribonuclease R winged-helix domain M2J07_12035 PF08206 Ribonuclease B OB domain M2J07_12035 PF00773 RNB domain M2J07_12035 PF00575 S1 RNA binding domain M2J07_12040 PF01432 Peptidase family M3 M2J07_12045 PF09526 Probable metal-binding protein (DUF2387) M2J07_12075 PF03937 Flavinator of succinate dehydrogenase M2J07_12080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_12080 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_12080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_12085 PF00743 Flavin-binding monooxygenase-like M2J07_12090 PF01196 Ribosomal protein L17 M2J07_12095 PF01000 RNA polymerase Rpb3/RpoA insert domain M2J07_12095 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M2J07_12095 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M2J07_12100 PF00163 Ribosomal protein S4/S9 N-terminal domain M2J07_12100 PF01479 S4 domain M2J07_12105 PF00411 Ribosomal protein S11 M2J07_12110 PF00416 Ribosomal protein S13/S18 M2J07_12115 PF00444 Ribosomal protein L36 M2J07_12120 PF00344 SecY translocase M2J07_12125 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M2J07_12130 PF00327 Ribosomal protein L30p/L7e M2J07_12135 PF00333 Ribosomal protein S5, N-terminal domain M2J07_12135 PF03719 Ribosomal protein S5, C-terminal domain M2J07_12140 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M2J07_12145 PF00347 Ribosomal protein L6 M2J07_12150 PF00410 Ribosomal protein S8 M2J07_12155 PF00253 Ribosomal protein S14p/S29e M2J07_12160 PF00281 Ribosomal protein L5 M2J07_12160 PF00673 ribosomal L5P family C-terminus M2J07_12165 PF00467 KOW motif M2J07_12165 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M2J07_12170 PF00238 Ribosomal protein L14p/L23e M2J07_12175 PF00366 Ribosomal protein S17 M2J07_12180 PF00831 Ribosomal L29 protein M2J07_12185 PF00252 Ribosomal protein L16p/L10e M2J07_12195 PF00237 Ribosomal protein L22p/L17e M2J07_12200 PF00203 Ribosomal protein S19 M2J07_12205 PF00181 Ribosomal Proteins L2, RNA binding domain M2J07_12205 PF03947 Ribosomal Proteins L2, C-terminal domain M2J07_12210 PF00276 Ribosomal protein L23 M2J07_12215 PF00573 Ribosomal protein L4/L1 family M2J07_12220 PF00297 Ribosomal protein L3 M2J07_12225 PF00338 Ribosomal protein S10p/S20e M2J07_12230 PF00117 Glutamine amidotransferase class-I M2J07_12235 PF01053 Cys/Met metabolism PLP-dependent enzyme M2J07_12240 PF05872 Bacterial protein of unknown function (DUF853) M2J07_12245 PF00970 Oxidoreductase FAD-binding domain M2J07_12245 PF00042 Globin M2J07_12245 PF00175 Oxidoreductase NAD-binding domain M2J07_12250 PF02082 Transcriptional regulator M2J07_12255 PF01926 50S ribosome-binding GTPase M2J07_12265 PF00375 Sodium:dicarboxylate symporter family M2J07_12275 PF01553 Acyltransferase M2J07_12290 PF00271 Helicase conserved C-terminal domain M2J07_12290 PF00270 DEAD/DEAH box helicase M2J07_12290 PF17191 RecG wedge domain M2J07_12295 PF00156 Phosphoribosyl transferase domain M2J07_12300 PF00293 NUDIX domain M2J07_12305 PF03641 Possible lysine decarboxylase M2J07_12310 PF01544 CorA-like Mg2+ transporter protein M2J07_12320 PF05494 MlaC protein M2J07_12330 PF02405 Permease MlaE M2J07_12335 PF00005 ABC transporter M2J07_12345 PF03880 DbpA RNA binding domain M2J07_12345 PF00270 DEAD/DEAH box helicase M2J07_12345 PF12343 Cold shock protein DEAD box A M2J07_12345 PF00271 Helicase conserved C-terminal domain M2J07_12350 PF00459 Inositol monophosphatase family M2J07_12355 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M2J07_12355 PF02779 Transketolase, pyrimidine binding domain M2J07_12355 PF02780 Transketolase, C-terminal domain M2J07_12360 PF00925 GTP cyclohydrolase II M2J07_12365 PF01218 Coproporphyrinogen III oxidase M2J07_12370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M2J07_12370 PF01488 Shikimate / quinate 5-dehydrogenase M2J07_12370 PF08501 Shikimate dehydrogenase substrate binding domain M2J07_12380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_12380 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_12380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_12380 PF12806 Acetyl-CoA dehydrogenase C-terminal like M2J07_12390 PF04024 PspC domain M2J07_12395 PF00571 CBS domain M2J07_12420 PF02091 Glycyl-tRNA synthetase alpha subunit M2J07_12425 PF05746 DALR anticodon binding domain M2J07_12425 PF02092 Glycyl-tRNA synthetase beta subunit M2J07_12435 PF00892 EamA-like transporter family M2J07_12440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_12440 PF03466 LysR substrate binding domain M2J07_12470 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M2J07_12475 PF04996 Succinylarginine dihydrolase M2J07_12480 PF00171 Aldehyde dehydrogenase family M2J07_12485 PF04958 Arginine N-succinyltransferase beta subunit M2J07_12490 PF00202 Aminotransferase class-III M2J07_12495 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M2J07_12495 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M2J07_12500 PF00324 Amino acid permease M2J07_12530 PF13614 AAA domain M2J07_12535 PF01594 AI-2E family transporter M2J07_12540 PF00080 Copper/zinc superoxide dismutase (SODC) M2J07_12545 PF12805 FUSC-like inner membrane protein yccS M2J07_12550 PF07690 Major Facilitator Superfamily M2J07_12560 PF02525 Flavodoxin-like fold M2J07_12565 PF03992 Antibiotic biosynthesis monooxygenase M2J07_12575 PF02913 FAD linked oxidases, C-terminal domain M2J07_12575 PF01565 FAD binding domain M2J07_12580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M2J07_12580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M2J07_12585 PF00892 EamA-like transporter family M2J07_12590 PF00892 EamA-like transporter family M2J07_12605 PF00905 Penicillin binding protein transpeptidase domain M2J07_12625 PF13614 AAA domain M2J07_12630 PF10544 T5orf172 domain M2J07_12650 PF00905 Penicillin binding protein transpeptidase domain M2J07_12670 PF13614 AAA domain M2J07_12675 PF10544 T5orf172 domain M2J07_12695 PF01925 Sulfite exporter TauE/SafE M2J07_12700 PF09157 Pseudouridine synthase II TruB, C-terminal M2J07_12700 PF16198 tRNA pseudouridylate synthase B C-terminal domain M2J07_12700 PF01509 TruB family pseudouridylate synthase (N terminal domain) M2J07_12705 PF03280 Proteobacterial lipase chaperone protein M2J07_12710 PF00561 alpha/beta hydrolase fold M2J07_12715 PF01245 Ribosomal protein L19 M2J07_12720 PF01746 tRNA (Guanine-1)-methyltransferase M2J07_12725 PF01782 RimM N-terminal domain M2J07_12725 PF05239 PRC-barrel domain M2J07_12730 PF00886 Ribosomal protein S16 M2J07_12770 PF02401 LytB protein M2J07_12775 PF00625 Guanylate kinase M2J07_12780 PF01192 RNA polymerase Rpb6 M2J07_12790 PF13291 ACT domain M2J07_12790 PF02824 TGS domain M2J07_12790 PF04607 Region found in RelA / SpoT proteins M2J07_12795 PF01042 Endoribonuclease L-PSP M2J07_12800 PF04324 BFD-like [2Fe-2S] binding domain M2J07_12805 PF00210 Ferritin-like domain M2J07_12810 PF15864 Protein glycosylation ligase M2J07_12810 PF11846 Virulence factor membrane-bound polymerase, C-terminal M2J07_12810 PF04932 O-Antigen ligase M2J07_12815 PF00114 Pilin (bacterial filament) M2J07_12815 PF07963 Prokaryotic N-terminal methylation motif M2J07_12825 PF04536 TPM domain M2J07_12830 PF04011 LemA family M2J07_12840 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_12840 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M2J07_12845 PF00310 Glutamine amidotransferases class-II M2J07_12845 PF04898 Glutamate synthase central domain M2J07_12845 PF01645 Conserved region in glutamate synthase M2J07_12845 PF01493 GXGXG motif M2J07_12855 PF01761 3-dehydroquinate synthase M2J07_12860 PF01202 Shikimate kinase M2J07_12865 PF07660 Secretin and TonB N terminus short domain M2J07_12865 PF00263 Bacterial type II and III secretion system protein M2J07_12865 PF03958 Bacterial type II/III secretion system short domain M2J07_12865 PF11741 AMIN domain M2J07_12875 PF04350 Pilus assembly protein, PilO M2J07_12880 PF05137 Fimbrial assembly protein (PilN) M2J07_12885 PF11104 Type IV pilus assembly protein PilM; M2J07_12890 PF17092 Penicillin-binding protein OB-like domain M2J07_12890 PF00912 Transglycosylase M2J07_12890 PF00905 Penicillin binding protein transpeptidase domain M2J07_12895 PF13847 Methyltransferase domain M2J07_12905 PF00953 Glycosyl transferase family 4 M2J07_12910 PF01225 Mur ligase family, catalytic domain M2J07_12910 PF02875 Mur ligase family, glutamate ligase domain M2J07_12910 PF08245 Mur ligase middle domain M2J07_12915 PF01225 Mur ligase family, catalytic domain M2J07_12915 PF02875 Mur ligase family, glutamate ligase domain M2J07_12915 PF08245 Mur ligase middle domain M2J07_12920 PF03717 Penicillin-binding Protein dimerisation domain M2J07_12920 PF00905 Penicillin binding protein transpeptidase domain M2J07_12930 PF01795 MraW methylase family M2J07_12945 PF00749 tRNA synthetases class I (E and Q), catalytic domain M2J07_12960 PF00324 Amino acid permease M2J07_12990 PF01545 Cation efflux family M2J07_12995 PF00873 AcrB/AcrD/AcrF family M2J07_13000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M2J07_13000 PF00529 HlyD membrane-fusion protein of T1SS M2J07_13020 PF04191 Phospholipid methyltransferase M2J07_13045 PF12848 ABC transporter M2J07_13045 PF00005 ABC transporter M2J07_13050 PF01053 Cys/Met metabolism PLP-dependent enzyme M2J07_13055 PF00106 short chain dehydrogenase M2J07_13060 PF01740 STAS domain M2J07_13060 PF00916 Sulfate permease family M2J07_13065 PF16921 Tex protein YqgF-like domain M2J07_13065 PF17674 HHH domain M2J07_13065 PF00575 S1 RNA binding domain M2J07_13065 PF09371 Tex-like protein N-terminal domain M2J07_13070 PF00072 Response regulator receiver domain M2J07_13070 PF00486 Transcriptional regulatory protein, C terminal M2J07_13075 PF00512 His Kinase A (phospho-acceptor) domain M2J07_13075 PF00672 HAMP domain M2J07_13075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_13085 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M2J07_13085 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M2J07_13090 PF00583 Acetyltransferase (GNAT) family M2J07_13110 PF00475 Imidazoleglycerol-phosphate dehydratase M2J07_13115 PF00117 Glutamine amidotransferase class-I M2J07_13130 PF00977 Histidine biosynthesis protein M2J07_13145 PF03992 Antibiotic biosynthesis monooxygenase M2J07_13160 PF01636 Phosphotransferase enzyme family M2J07_13165 PF00977 Histidine biosynthesis protein M2J07_13180 PF00230 Major intrinsic protein M2J07_13205 PF02705 K+ potassium transporter M2J07_13225 PF02525 Flavodoxin-like fold M2J07_13230 PF01638 HxlR-like helix-turn-helix M2J07_13260 PF02311 AraC-like ligand binding domain M2J07_13260 PF12833 Helix-turn-helix domain M2J07_13265 PF00248 Aldo/keto reductase family M2J07_13290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_13290 PF03466 LysR substrate binding domain M2J07_13295 PF07690 Major Facilitator Superfamily M2J07_13315 PF01593 Flavin containing amine oxidoreductase M2J07_13320 PF02678 Pirin M2J07_13320 PF05726 Pirin C-terminal cupin domain M2J07_13325 PF00857 Isochorismatase family M2J07_13330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_13335 PF00171 Aldehyde dehydrogenase family M2J07_13340 PF00202 Aminotransferase class-III M2J07_13345 PF00155 Aminotransferase class I and II M2J07_13345 PF00392 Bacterial regulatory proteins, gntR family M2J07_13350 PF00324 Amino acid permease M2J07_13360 PF03591 AzlC protein M2J07_13370 PF00436 Single-strand binding protein family M2J07_13375 PF07690 Major Facilitator Superfamily M2J07_13385 PF08543 Phosphomethylpyrimidine kinase M2J07_13385 PF03070 TENA/THI-4/PQQC family M2J07_13385 PF02581 Thiamine monophosphate synthase M2J07_13390 PF06942 GlpM protein M2J07_13400 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_13400 PF00107 Zinc-binding dehydrogenase M2J07_13405 PF00440 Bacterial regulatory proteins, tetR family M2J07_13405 PF16925 Tetracyclin repressor-like, C-terminal domain M2J07_13410 PF17755 UvrA DNA-binding domain M2J07_13410 PF17760 UvrA interaction domain M2J07_13410 PF00005 ABC transporter M2J07_13420 PF00990 Diguanylate cyclase, GGDEF domain M2J07_13430 PF02028 BCCT, betaine/carnitine/choline family transporter M2J07_13440 PF00474 Sodium:solute symporter family M2J07_13445 PF04341 Protein of unknown function, DUF485 M2J07_13450 PF00512 His Kinase A (phospho-acceptor) domain M2J07_13450 PF00672 HAMP domain M2J07_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_13450 PF01627 Hpt domain M2J07_13450 PF00072 Response regulator receiver domain M2J07_13465 PF03358 NADPH-dependent FMN reductase M2J07_13470 PF00296 Luciferase-like monooxygenase M2J07_13475 PF00872 Transposase, Mutator family M2J07_13480 PF01037 Lrp/AsnC ligand binding domain M2J07_13485 PF00857 Isochorismatase family M2J07_13490 PF13193 AMP-binding enzyme C-terminal domain M2J07_13490 PF00501 AMP-binding enzyme M2J07_13490 PF16177 Acetyl-coenzyme A synthetase N-terminus M2J07_13500 PF00924 Mechanosensitive ion channel M2J07_13505 PF04452 RNA methyltransferase M2J07_13510 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M2J07_13515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M2J07_13535 PF17768 RecJ OB domain M2J07_13535 PF01368 DHH family M2J07_13535 PF02272 DHHA1 domain M2J07_13540 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M2J07_13540 PF01243 Pyridoxamine 5'-phosphate oxidase M2J07_13545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M2J07_13545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M2J07_13545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M2J07_13545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M2J07_13550 PF00571 CBS domain M2J07_13550 PF00478 IMP dehydrogenase / GMP reductase domain M2J07_13555 PF03692 Putative zinc- or iron-chelating domain M2J07_13560 PF01613 Flavin reductase like domain M2J07_13560 PF00258 Flavodoxin M2J07_13565 PF00593 TonB dependent receptor M2J07_13565 PF07715 TonB-dependent Receptor Plug Domain M2J07_13570 PF01169 Uncharacterized protein family UPF0016 M2J07_13580 PF02817 e3 binding domain M2J07_13580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M2J07_13580 PF00364 Biotin-requiring enzyme M2J07_13585 PF00456 Transketolase, thiamine diphosphate binding domain M2J07_13585 PF17831 Pyruvate dehydrogenase E1 component middle domain M2J07_13590 PF01551 Peptidase family M23 M2J07_13600 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M2J07_13605 PF00091 Tubulin/FtsZ family, GTPase domain M2J07_13605 PF12327 FtsZ family, C-terminal domain M2J07_13610 PF02491 SHS2 domain inserted in FTSA M2J07_13615 PF08478 POTRA domain, FtsQ-type M2J07_13615 PF03799 Cell division protein FtsQ M2J07_13620 PF01820 D-ala D-ala ligase N-terminus M2J07_13620 PF07478 D-ala D-ala ligase C-terminus M2J07_13625 PF01225 Mur ligase family, catalytic domain M2J07_13625 PF02875 Mur ligase family, glutamate ligase domain M2J07_13625 PF08245 Mur ligase middle domain M2J07_13630 PF03033 Glycosyltransferase family 28 N-terminal domain M2J07_13630 PF04101 Glycosyltransferase family 28 C-terminal domain M2J07_13635 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M2J07_13635 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M2J07_13645 PF07715 TonB-dependent Receptor Plug Domain M2J07_13645 PF00593 TonB dependent receptor M2J07_13650 PF00156 Phosphoribosyl transferase domain M2J07_13655 PF03372 Endonuclease/Exonuclease/phosphatase family M2J07_13660 PF03960 ArsC family M2J07_13670 PF07859 alpha/beta hydrolase fold M2J07_13675 PF00990 Diguanylate cyclase, GGDEF domain M2J07_13675 PF07694 5TMR of 5TMR-LYT M2J07_13680 PF02683 Cytochrome C biogenesis protein transmembrane region M2J07_13680 PF11412 Disulphide bond corrector protein DsbC M2J07_13710 PF00576 HIUase/Transthyretin family M2J07_13715 PF00860 Permease family M2J07_13725 PF01494 FAD binding domain M2J07_13730 PF03561 Allantoicase repeat M2J07_13735 PF04115 Ureidoglycolate lyase M2J07_13740 PF00106 short chain dehydrogenase M2J07_13745 PF01751 Toprim domain M2J07_13745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_13745 PF00986 DNA gyrase B subunit, carboxyl terminus M2J07_13745 PF00204 DNA gyrase B M2J07_13750 PF05728 Uncharacterised protein family (UPF0227) M2J07_13770 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M2J07_13770 PF04717 Type VI secretion system, phage-baseplate injector M2J07_13770 PF13296 Putative type VI secretion system Rhs element Vgr M2J07_13775 PF02600 Disulfide bond formation protein DsbB M2J07_13780 PF04262 Glutamate-cysteine ligase M2J07_13795 PF04286 Protein of unknown function (DUF445) M2J07_13800 PF00155 Aminotransferase class I and II M2J07_13805 PF01554 MatE M2J07_13810 PF00106 short chain dehydrogenase M2J07_13820 PF00486 Transcriptional regulatory protein, C terminal M2J07_13820 PF00072 Response regulator receiver domain M2J07_13825 PF11808 Phosphate regulon sensor protein PhoR M2J07_13825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_13825 PF00512 His Kinase A (phospho-acceptor) domain M2J07_13825 PF00989 PAS fold M2J07_13845 PF03069 Acetamidase/Formamidase family M2J07_13850 PF02666 Phosphatidylserine decarboxylase M2J07_13855 PF00581 Rhodanese-like domain M2J07_13860 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M2J07_13860 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M2J07_13865 PF02580 D-Tyr-tRNA(Tyr) deacylase M2J07_13890 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M2J07_13890 PF00925 GTP cyclohydrolase II M2J07_13895 PF00885 6,7-dimethyl-8-ribityllumazine synthase M2J07_13900 PF01029 NusB family M2J07_13905 PF00586 AIR synthase related protein, N-terminal domain M2J07_13905 PF02769 AIR synthase related protein, C-terminal domain M2J07_13910 PF04608 Phosphatidylglycerophosphatase A M2J07_13915 PF12804 MobA-like NTP transferase domain M2J07_13915 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_13915 PF14602 Hexapeptide repeat of succinyl-transferase M2J07_13920 PF01380 SIS domain M2J07_13925 PF01177 Asp/Glu/Hydantoin racemase M2J07_13945 PF00491 Arginase family M2J07_13950 PF01979 Amidohydrolase family M2J07_13955 PF00324 Amino acid permease M2J07_13960 PF00221 Aromatic amino acid lyase M2J07_13965 PF17392 Urocanase C-terminal domain M2J07_13965 PF17391 Urocanase N-terminal domain M2J07_13965 PF01175 Urocanase Rossmann-like domain M2J07_13970 PF05962 HutD M2J07_13975 PF07702 UTRA domain M2J07_13975 PF00392 Bacterial regulatory proteins, gntR family M2J07_13985 PF07683 Cobalamin synthesis protein cobW C-terminal domain M2J07_13985 PF02492 CobW/HypB/UreG, nucleotide-binding domain M2J07_13995 PF00324 Amino acid permease M2J07_14005 PF14497 Glutathione S-transferase, C-terminal domain M2J07_14005 PF02798 Glutathione S-transferase, N-terminal domain M2J07_14010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M2J07_14020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M2J07_14025 PF04463 Protein of unknown function (DUF523) M2J07_14030 PF01554 MatE M2J07_14035 PF01758 Sodium Bile acid symporter family M2J07_14040 PF00857 Isochorismatase family M2J07_14045 PF00701 Dihydrodipicolinate synthetase family M2J07_14055 PF01259 SAICAR synthetase M2J07_14065 PF01226 Formate/nitrite transporter M2J07_14070 PF12002 MgsA AAA+ ATPase C terminal M2J07_14070 PF16193 AAA C-terminal domain M2J07_14070 PF00004 ATPase family associated with various cellular activities (AAA) M2J07_14075 PF07995 Glucose / Sorbosone dehydrogenase M2J07_14080 PF03692 Putative zinc- or iron-chelating domain M2J07_14085 PF07043 Protein of unknown function (DUF1328) M2J07_14100 PF00730 HhH-GPD superfamily base excision DNA repair protein M2J07_14100 PF14815 NUDIX domain M2J07_14100 PF00633 Helix-hairpin-helix motif M2J07_14100 PF10576 Iron-sulfur binding domain of endonuclease III M2J07_14115 PF03352 Methyladenine glycosylase M2J07_14120 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_14120 PF00107 Zinc-binding dehydrogenase M2J07_14125 PF00155 Aminotransferase class I and II M2J07_14125 PF00392 Bacterial regulatory proteins, gntR family M2J07_14140 PF03466 LysR substrate binding domain M2J07_14140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_14145 PF00248 Aldo/keto reductase family M2J07_14150 PF07690 Major Facilitator Superfamily M2J07_14160 PF05173 Dihydrodipicolinate reductase, C-terminus M2J07_14160 PF01113 Dihydrodipicolinate reductase, N-terminus M2J07_14170 PF00226 DnaJ domain M2J07_14170 PF01556 DnaJ C terminal domain M2J07_14170 PF00684 DnaJ central domain M2J07_14180 PF00873 AcrB/AcrD/AcrF family M2J07_14185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M2J07_14190 PF08361 MAATS-type transcriptional repressor, C-terminal region M2J07_14190 PF00440 Bacterial regulatory proteins, tetR family M2J07_14195 PF00311 Phosphoenolpyruvate carboxylase M2J07_14200 PF00860 Permease family M2J07_14205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_14205 PF03466 LysR substrate binding domain M2J07_14220 PF00920 Dehydratase family M2J07_14225 PF02911 Formyl transferase, C-terminal domain M2J07_14225 PF00551 Formyl transferase M2J07_14230 PF01189 16S rRNA methyltransferase RsmB/F M2J07_14230 PF01029 NusB family M2J07_14240 PF00209 Sodium:neurotransmitter symporter family M2J07_14280 PF00579 tRNA synthetases class I (W and Y) M2J07_14285 PF03702 Anhydro-N-acetylmuramic acid kinase M2J07_14290 PF00561 alpha/beta hydrolase fold M2J07_14295 PF01521 Iron-sulphur cluster biosynthesis M2J07_14315 PF00005 ABC transporter M2J07_14315 PF12848 ABC transporter M2J07_14320 PF09335 SNARE associated Golgi protein M2J07_14330 PF00204 DNA gyrase B M2J07_14330 PF00986 DNA gyrase B subunit, carboxyl terminus M2J07_14330 PF18053 DNA gyrase B subunit insert domain M2J07_14330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_14330 PF01751 Toprim domain M2J07_14335 PF02463 RecF/RecN/SMC N terminal domain M2J07_14340 PF00712 DNA polymerase III beta subunit, N-terminal domain M2J07_14340 PF02767 DNA polymerase III beta subunit, central domain M2J07_14340 PF02768 DNA polymerase III beta subunit, C-terminal domain M2J07_14345 PF08299 Bacterial dnaA protein helix-turn-helix M2J07_14345 PF11638 DnaA N-terminal domain M2J07_14345 PF00308 Bacterial dnaA protein M2J07_14350 PF00468 Ribosomal protein L34 M2J07_14355 PF00825 Ribonuclease P M2J07_14360 PF01809 Putative membrane protein insertion efficiency factor M2J07_14365 PF02096 60Kd inner membrane protein M2J07_14365 PF14849 YidC periplasmic domain M2J07_14370 PF12631 MnmE helical domain M2J07_14370 PF10396 GTP-binding protein TrmE N-terminus M2J07_14370 PF01926 50S ribosome-binding GTPase M2J07_14375 PF02583 Metal-sensitive transcriptional repressor M2J07_14380 PF01545 Cation efflux family M2J07_14380 PF16916 Dimerisation domain of Zinc Transporter M2J07_14385 PF13098 Thioredoxin-like domain M2J07_14385 PF10411 Disulfide bond isomerase protein N-terminus M2J07_14395 PF00156 Phosphoribosyl transferase domain M2J07_14400 PF01979 Amidohydrolase family M2J07_14405 PF00355 Rieske [2Fe-2S] domain M2J07_14410 PF03738 Glutathionylspermidine synthase preATP-grasp M2J07_14420 PF03741 Integral membrane protein TerC family M2J07_14425 PF01569 PAP2 superfamily M2J07_14435 PF01225 Mur ligase family, catalytic domain M2J07_14435 PF02875 Mur ligase family, glutamate ligase domain M2J07_14435 PF08245 Mur ligase middle domain M2J07_14445 PF00731 AIR carboxylase M2J07_14450 PF02222 ATP-grasp domain M2J07_14450 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M2J07_14455 PF13406 Transglycosylase SLT domain M2J07_14475 PF00012 Hsp70 protein M2J07_14480 PF01025 GrpE M2J07_14485 PF03466 LysR substrate binding domain M2J07_14485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_14505 PF07859 alpha/beta hydrolase fold M2J07_14510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M2J07_14550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M2J07_14555 PF01252 Signal peptidase (SPase) II M2J07_14560 PF08264 Anticodon-binding domain of tRNA M2J07_14560 PF00133 tRNA synthetases class I (I, L, M and V) M2J07_14560 PF06827 Zinc finger found in FPG and IleRS M2J07_14565 PF06574 FAD synthetase M2J07_14565 PF01687 Riboflavin kinase M2J07_14575 PF01048 Phosphorylase superfamily M2J07_14580 PF08362 YcdC-like protein, C-terminal region M2J07_14580 PF00440 Bacterial regulatory proteins, tetR family M2J07_14585 PF00005 ABC transporter M2J07_14590 PF00528 Binding-protein-dependent transport system inner membrane component M2J07_14595 PF00296 Luciferase-like monooxygenase M2J07_14600 PF09084 NMT1/THI5 like M2J07_14605 PF09084 NMT1/THI5 like M2J07_14610 PF00696 Amino acid kinase family M2J07_14610 PF00583 Acetyltransferase (GNAT) family M2J07_14625 PF00106 short chain dehydrogenase M2J07_14630 PF13419 Haloacid dehalogenase-like hydrolase M2J07_14640 PF01323 DSBA-like thioredoxin domain M2J07_14645 PF08360 QacR-like protein, C-terminal region M2J07_14645 PF00440 Bacterial regulatory proteins, tetR family M2J07_14650 PF00440 Bacterial regulatory proteins, tetR family M2J07_14655 PF00175 Oxidoreductase NAD-binding domain M2J07_14660 PF00487 Fatty acid desaturase M2J07_14665 PF03725 3' exoribonuclease family, domain 2 M2J07_14665 PF01138 3' exoribonuclease family, domain 1 M2J07_14670 PF05506 Domain of unknown function (DUF756) M2J07_14670 PF04185 Phosphoesterase family M2J07_14680 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M2J07_14680 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M2J07_14685 PF01510 N-acetylmuramoyl-L-alanine amidase M2J07_14690 PF03023 Lipid II flippase MurJ M2J07_14695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M2J07_14695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M2J07_14700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M2J07_14700 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M2J07_14705 PF02706 Chain length determinant protein M2J07_14705 PF13807 G-rich domain on putative tyrosine kinase M2J07_14705 PF13614 AAA domain M2J07_14710 PF01451 Low molecular weight phosphotyrosine protein phosphatase M2J07_14715 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M2J07_14715 PF10531 SLBB domain M2J07_14715 PF02563 Polysaccharide biosynthesis/export protein M2J07_14720 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M2J07_14720 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M2J07_14720 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M2J07_14730 PF04230 Polysaccharide pyruvyl transferase M2J07_14735 PF00535 Glycosyl transferase family 2 M2J07_14750 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M2J07_14750 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M2J07_14750 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M2J07_14755 PF00534 Glycosyl transferases group 1 M2J07_14755 PF13439 Glycosyltransferase Family 4 M2J07_14760 PF02397 Bacterial sugar transferase M2J07_14765 PF17836 PglD N-terminal domain M2J07_14765 PF14602 Hexapeptide repeat of succinyl-transferase M2J07_14765 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_14770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M2J07_14775 PF02719 Polysaccharide biosynthesis protein M2J07_14780 PF00483 Nucleotidyl transferase M2J07_14785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M2J07_14785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M2J07_14785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M2J07_14790 PF00342 Phosphoglucose isomerase M2J07_14795 PF16363 GDP-mannose 4,6 dehydratase M2J07_14800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M2J07_14800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M2J07_14800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M2J07_14800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M2J07_14805 PF02652 L-lactate permease M2J07_14810 PF00392 Bacterial regulatory proteins, gntR family M2J07_14810 PF07729 FCD domain M2J07_14815 PF01070 FMN-dependent dehydrogenase M2J07_14820 PF09330 D-lactate dehydrogenase, membrane binding M2J07_14820 PF01565 FAD binding domain M2J07_14825 PF00155 Aminotransferase class I and II M2J07_14835 PF07729 FCD domain M2J07_14835 PF00392 Bacterial regulatory proteins, gntR family M2J07_14845 PF00285 Citrate synthase, C-terminal domain M2J07_14850 PF00330 Aconitase family (aconitate hydratase) M2J07_14850 PF00694 Aconitase C-terminal domain M2J07_14885 PF00109 Beta-ketoacyl synthase, N-terminal domain M2J07_14885 PF02801 Beta-ketoacyl synthase, C-terminal domain M2J07_14895 PF00440 Bacterial regulatory proteins, tetR family M2J07_14895 PF08361 MAATS-type transcriptional repressor, C-terminal region M2J07_14910 PF00849 RNA pseudouridylate synthase M2J07_14925 PF07715 TonB-dependent Receptor Plug Domain M2J07_14925 PF00593 TonB dependent receptor M2J07_14935 PF01037 Lrp/AsnC ligand binding domain M2J07_14940 PF01266 FAD dependent oxidoreductase M2J07_14945 PF01168 Alanine racemase, N-terminal domain M2J07_14945 PF00842 Alanine racemase, C-terminal domain M2J07_14950 PF01042 Endoribonuclease L-PSP M2J07_14955 PF00324 Amino acid permease M2J07_14960 PF00324 Amino acid permease M2J07_14970 PF00171 Aldehyde dehydrogenase family M2J07_14975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M2J07_14975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M2J07_14980 PF00501 AMP-binding enzyme M2J07_14980 PF13193 AMP-binding enzyme C-terminal domain M2J07_14985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_14985 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_14985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_14990 PF00378 Enoyl-CoA hydratase/isomerase M2J07_14995 PF00378 Enoyl-CoA hydratase/isomerase M2J07_15000 PF00083 Sugar (and other) transporter M2J07_15000 PF07690 Major Facilitator Superfamily M2J07_15005 PF00765 Autoinducer synthase M2J07_15015 PF03472 Autoinducer binding domain M2J07_15015 PF00196 Bacterial regulatory proteins, luxR family M2J07_15020 PF00501 AMP-binding enzyme M2J07_15025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_15025 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_15025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_15030 PF00109 Beta-ketoacyl synthase, N-terminal domain M2J07_15030 PF08242 Methyltransferase domain M2J07_15030 PF00550 Phosphopantetheine attachment site M2J07_15030 PF14765 Polyketide synthase dehydratase M2J07_15030 PF00975 Thioesterase domain M2J07_15030 PF16197 Ketoacyl-synthetase C-terminal extension M2J07_15030 PF02801 Beta-ketoacyl synthase, C-terminal domain M2J07_15050 PF12697 Alpha/beta hydrolase family M2J07_15055 PF01648 4'-phosphopantetheinyl transferase superfamily M2J07_15070 PF01722 BolA-like protein M2J07_15080 PF13614 AAA domain M2J07_15095 PF09335 SNARE associated Golgi protein M2J07_15100 PF07681 DoxX M2J07_15105 PF04286 Protein of unknown function (DUF445) M2J07_15110 PF00958 GMP synthase C terminal domain M2J07_15110 PF02540 NAD synthase M2J07_15110 PF00117 Glutamine amidotransferase class-I M2J07_15115 PF01909 Nucleotidyltransferase domain M2J07_15115 PF13427 Domain of unknown function (DUF4111) M2J07_15120 PF03551 Transcriptional regulator PadR-like family M2J07_15130 PF02678 Pirin M2J07_15130 PF05726 Pirin C-terminal cupin domain M2J07_15150 PF03485 Arginyl tRNA synthetase N terminal domain M2J07_15150 PF05746 DALR anticodon binding domain M2J07_15150 PF00750 tRNA synthetases class I (R) M2J07_15155 PF00390 Malic enzyme, N-terminal domain M2J07_15155 PF03949 Malic enzyme, NAD binding domain M2J07_15165 PF04261 Dyp-type peroxidase family M2J07_15170 PF01810 LysE type translocator M2J07_15175 PF00950 ABC 3 transport family M2J07_15180 PF00005 ABC transporter M2J07_15200 PF00119 ATP synthase A chain M2J07_15205 PF00137 ATP synthase subunit C M2J07_15210 PF00430 ATP synthase B/B' CF(0) M2J07_15215 PF00213 ATP synthase delta (OSCP) subunit M2J07_15220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M2J07_15220 PF00306 ATP synthase alpha/beta chain, C terminal domain M2J07_15220 PF02874 ATP synthase alpha/beta family, beta-barrel domain M2J07_15225 PF00231 ATP synthase M2J07_15230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M2J07_15230 PF02874 ATP synthase alpha/beta family, beta-barrel domain M2J07_15235 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M2J07_15245 PF00255 Glutathione peroxidase M2J07_15255 PF07690 Major Facilitator Superfamily M2J07_15260 PF00440 Bacterial regulatory proteins, tetR family M2J07_15265 PF00892 EamA-like transporter family M2J07_15270 PF01300 Telomere recombination M2J07_15275 PF02481 DNA recombination-mediator protein A M2J07_15275 PF17782 DprA winged helix domain M2J07_15285 PF01327 Polypeptide deformylase M2J07_15345 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_15355 PF03358 NADPH-dependent FMN reductase M2J07_15375 PF11842 Domain of unknown function (DUF3362) M2J07_15375 PF04055 Radical SAM superfamily M2J07_15375 PF08497 Radical SAM N-terminal M2J07_15395 PF11798 IMS family HHH motif M2J07_15395 PF00817 impB/mucB/samB family M2J07_15395 PF11799 impB/mucB/samB family C-terminal domain M2J07_15405 PF07690 Major Facilitator Superfamily M2J07_15410 PF03641 Possible lysine decarboxylase M2J07_15415 PF03471 Transporter associated domain M2J07_15415 PF03741 Integral membrane protein TerC family M2J07_15420 PF02810 SEC-C motif M2J07_15425 PF03458 UPF0126 domain M2J07_15430 PF07690 Major Facilitator Superfamily M2J07_15435 PF03989 DNA gyrase C-terminal domain, beta-propeller M2J07_15435 PF00521 DNA gyrase/topoisomerase IV, subunit A M2J07_15440 PF00501 AMP-binding enzyme M2J07_15440 PF13193 AMP-binding enzyme C-terminal domain M2J07_15455 PF00719 Inorganic pyrophosphatase M2J07_15460 PF03573 outer membrane porin, OprD family M2J07_15475 PF00701 Dihydrodipicolinate synthetase family M2J07_15485 PF00155 Aminotransferase class I and II M2J07_15485 PF00392 Bacterial regulatory proteins, gntR family M2J07_15500 PF00665 Integrase core domain M2J07_15520 PF00582 Universal stress protein family M2J07_15525 PF00916 Sulfate permease family M2J07_15525 PF01740 STAS domain M2J07_15535 PF07690 Major Facilitator Superfamily M2J07_15540 PF00440 Bacterial regulatory proteins, tetR family M2J07_15540 PF02909 Tetracyclin repressor-like, C-terminal domain M2J07_15560 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M2J07_15565 PF01636 Phosphotransferase enzyme family M2J07_15585 PF00543 Nitrogen regulatory protein P-II M2J07_15590 PF00909 Ammonium Transporter Family M2J07_15595 PF03477 ATP cone domain M2J07_15600 PF01872 RibD C-terminal domain M2J07_15600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M2J07_15610 PF00677 Lumazine binding domain M2J07_15630 PF00883 Cytosol aminopeptidase family, catalytic domain M2J07_15630 PF02789 Cytosol aminopeptidase family, N-terminal domain M2J07_15640 PF03739 Lipopolysaccharide export system permease LptF/LptG M2J07_15645 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M2J07_15645 PF01676 Metalloenzyme superfamily M2J07_15650 PF00595 PDZ domain M2J07_15650 PF03572 Peptidase family S41 M2J07_15655 PF00158 Sigma-54 interaction domain M2J07_15655 PF02954 Bacterial regulatory protein, Fis family M2J07_15655 PF00072 Response regulator receiver domain M2J07_15660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_15660 PF00512 His Kinase A (phospho-acceptor) domain M2J07_15665 PF00072 Response regulator receiver domain M2J07_15665 PF00196 Bacterial regulatory proteins, luxR family M2J07_15670 PF00768 D-alanyl-D-alanine carboxypeptidase M2J07_15675 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_15680 PF01842 ACT domain M2J07_15680 PF00742 Homoserine dehydrogenase M2J07_15680 PF03447 Homoserine dehydrogenase, NAD binding domain M2J07_15685 PF10411 Disulfide bond isomerase protein N-terminus M2J07_15685 PF13098 Thioredoxin-like domain M2J07_15690 PF02899 Phage integrase, N-terminal SAM-like domain M2J07_15690 PF00589 Phage integrase family M2J07_15700 PF02421 Ferrous iron transport protein B M2J07_15700 PF07670 Nucleoside recognition M2J07_15700 PF07664 Ferrous iron transport protein B C terminus M2J07_15710 PF02875 Mur ligase family, glutamate ligase domain M2J07_15710 PF08245 Mur ligase middle domain M2J07_15715 PF01098 Cell cycle protein M2J07_15720 PF00749 tRNA synthetases class I (E and Q), catalytic domain M2J07_15725 PF01258 Prokaryotic dksA/traR C4-type zinc finger M2J07_15730 PF00149 Calcineurin-like phosphoesterase M2J07_15735 PF00293 NUDIX domain M2J07_15740 PF13667 ThiC-associated domain M2J07_15740 PF01964 Radical SAM ThiC family M2J07_15755 PF00892 EamA-like transporter family M2J07_15760 PF02321 Outer membrane efflux protein M2J07_15765 PF01895 PhoU domain M2J07_15770 PF04362 Bacterial Fe(2+) trafficking M2J07_15775 PF14698 Argininosuccinate lyase C-terminal M2J07_15775 PF00206 Lyase M2J07_15780 PF07694 5TMR of 5TMR-LYT M2J07_15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_15780 PF06580 Histidine kinase M2J07_15785 PF04397 LytTr DNA-binding domain M2J07_15785 PF00072 Response regulator receiver domain M2J07_15790 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M2J07_15790 PF03900 Porphobilinogen deaminase, C-terminal domain M2J07_15815 PF00816 H-NS histone family M2J07_15830 PF00263 Bacterial type II and III secretion system protein M2J07_15830 PF03958 Bacterial type II/III secretion system short domain M2J07_15835 PF12401 Protein of unknown function (DUF2662) M2J07_15835 PF00498 FHA domain M2J07_15840 PF13419 Haloacid dehalogenase-like hydrolase M2J07_15845 PF04715 Anthranilate synthase component I, N terminal region M2J07_15845 PF00425 chorismate binding enzyme M2J07_15870 PF00009 Elongation factor Tu GTP binding domain M2J07_15870 PF03144 Elongation factor Tu domain 2 M2J07_15870 PF03143 Elongation factor Tu C-terminal domain M2J07_15880 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M2J07_15885 PF00467 KOW motif M2J07_15885 PF02357 Transcription termination factor nusG M2J07_15890 PF00298 Ribosomal protein L11, RNA binding domain M2J07_15890 PF03946 Ribosomal protein L11, N-terminal domain M2J07_15895 PF00687 Ribosomal protein L1p/L10e family M2J07_15900 PF00466 Ribosomal protein L10 M2J07_15905 PF16320 Ribosomal protein L7/L12 dimerisation domain M2J07_15905 PF00542 Ribosomal protein L7/L12 C-terminal domain M2J07_15910 PF04560 RNA polymerase Rpb2, domain 7 M2J07_15910 PF04563 RNA polymerase beta subunit M2J07_15910 PF04561 RNA polymerase Rpb2, domain 2 M2J07_15910 PF04565 RNA polymerase Rpb2, domain 3 M2J07_15910 PF10385 RNA polymerase beta subunit external 1 domain M2J07_15910 PF00562 RNA polymerase Rpb2, domain 6 M2J07_15915 PF04997 RNA polymerase Rpb1, domain 1 M2J07_15915 PF04998 RNA polymerase Rpb1, domain 5 M2J07_15915 PF00623 RNA polymerase Rpb1, domain 2 M2J07_15915 PF05000 RNA polymerase Rpb1, domain 4 M2J07_15915 PF04983 RNA polymerase Rpb1, domain 3 M2J07_15935 PF00561 alpha/beta hydrolase fold M2J07_15940 PF03553 Na+/H+ antiporter family M2J07_15940 PF13726 Na+-H+ antiporter family M2J07_15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_15955 PF00183 Hsp90 protein M2J07_15970 PF01323 DSBA-like thioredoxin domain M2J07_15980 PF00376 MerR family regulatory protein M2J07_15980 PF09278 MerR, DNA binding M2J07_16000 PF02803 Thiolase, C-terminal domain M2J07_16000 PF00108 Thiolase, N-terminal domain M2J07_16005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M2J07_16005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M2J07_16005 PF00378 Enoyl-CoA hydratase/isomerase M2J07_16025 PF08459 UvrC Helix-hairpin-helix N-terminal M2J07_16025 PF02151 UvrB/uvrC motif M2J07_16025 PF01541 GIY-YIG catalytic domain M2J07_16035 PF01066 CDP-alcohol phosphatidyltransferase M2J07_16040 PF12833 Helix-turn-helix domain M2J07_16040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M2J07_16040 PF02805 Metal binding domain of Ada M2J07_16040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M2J07_16065 PF13533 Biotin-lipoyl like M2J07_16070 PF03652 Holliday junction resolvase M2J07_16075 PF02622 Uncharacterized ACR, COG1678 M2J07_16080 PF02463 RecF/RecN/SMC N terminal domain M2J07_16090 PF06865 Pyrimidine/purine nucleoside phosphorylase M2J07_16095 PF00588 SpoU rRNA Methylase family M2J07_16095 PF08032 RNA 2'-O ribose methyltransferase substrate binding M2J07_16105 PF01121 Dephospho-CoA kinase M2J07_16110 PF06750 Bacterial Peptidase A24 N-terminal domain M2J07_16110 PF01478 Type IV leader peptidase family M2J07_16120 PF00482 Type II secretion system (T2SS), protein F M2J07_16125 PF00437 Type II/IV secretion system protein M2J07_16125 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M2J07_16130 PF00121 Triosephosphate isomerase M2J07_16135 PF03840 Preprotein translocase SecG subunit M2J07_16155 PF17384 RimP C-terminal SH3 domain M2J07_16155 PF02576 RimP N-terminal domain M2J07_16160 PF00575 S1 RNA binding domain M2J07_16160 PF13184 NusA-like KH domain M2J07_16160 PF08529 NusA N-terminal domain M2J07_16165 PF00009 Elongation factor Tu GTP binding domain M2J07_16165 PF11987 Translation-initiation factor 2 M2J07_16165 PF08364 Bacterial translation initiation factor IF-2 associated region M2J07_16165 PF04760 Translation initiation factor IF-2, N-terminal region M2J07_16170 PF02033 Ribosome-binding factor A M2J07_16175 PF03334 Na+/H+ antiporter subunit M2J07_16180 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M2J07_16185 PF01899 Na+/H+ ion antiporter subunit M2J07_16190 PF00361 Proton-conducting membrane transporter M2J07_16195 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M2J07_16200 PF13244 Domain of unknown function (DUF4040) M2J07_16200 PF00361 Proton-conducting membrane transporter M2J07_16200 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M2J07_16200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M2J07_16215 PF01502 Phosphoribosyl-AMP cyclohydrolase M2J07_16220 PF01494 FAD binding domain M2J07_16225 PF03109 ABC1 family M2J07_16235 PF01209 ubiE/COQ5 methyltransferase family M2J07_16245 PF03976 Polyphosphate kinase 2 (PPK2) M2J07_16255 PF17946 RecC C-terminal domain M2J07_16260 PF12705 PD-(D/E)XK nuclease superfamily M2J07_16260 PF00580 UvrD/REP helicase N-terminal domain M2J07_16260 PF13361 UvrD-like helicase C-terminal domain M2J07_16265 PF13538 UvrD-like helicase C-terminal domain M2J07_16270 PF00144 Beta-lactamase M2J07_16275 PF00312 Ribosomal protein S15 M2J07_16280 PF00575 S1 RNA binding domain M2J07_16280 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M2J07_16280 PF01138 3' exoribonuclease family, domain 1 M2J07_16280 PF00013 KH domain M2J07_16280 PF03725 3' exoribonuclease family, domain 2 M2J07_16285 PF01544 CorA-like Mg2+ transporter protein M2J07_16295 PF00226 DnaJ domain M2J07_16295 PF01556 DnaJ C terminal domain M2J07_16305 PF01430 Hsp33 protein M2J07_16310 PF00999 Sodium/hydrogen exchanger family M2J07_16310 PF02254 TrkA-N domain M2J07_16315 PF18074 Primosomal protein N C-terminal domain M2J07_16315 PF17764 3′ DNA-binding domain (3′BD) M2J07_16315 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M2J07_16315 PF00270 DEAD/DEAH box helicase M2J07_16315 PF00271 Helicase conserved C-terminal domain M2J07_16320 PF00482 Type II secretion system (T2SS), protein F M2J07_16325 PF07963 Prokaryotic N-terminal methylation motif M2J07_16325 PF08334 Type II secretion system (T2SS), protein G M2J07_16335 PF01588 Putative tRNA binding domain M2J07_16340 PF00795 Carbon-nitrogen hydrolase M2J07_16345 PF00571 CBS domain M2J07_16345 PF03471 Transporter associated domain M2J07_16350 PF01206 Sulfurtransferase TusA M2J07_16365 PF01177 Asp/Glu/Hydantoin racemase M2J07_16375 PF00762 Ferrochelatase M2J07_16380 PF00753 Metallo-beta-lactamase superfamily M2J07_16385 PF03884 DNA gyrase inhibitor YacG M2J07_16405 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M2J07_16420 PF01197 Ribosomal protein L31 M2J07_16425 PF03109 ABC1 family M2J07_16430 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M2J07_16430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_16435 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M2J07_16435 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_16435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_16440 PF01554 MatE M2J07_16450 PF04055 Radical SAM superfamily M2J07_16450 PF06969 HemN C-terminal domain M2J07_16455 PF00106 short chain dehydrogenase M2J07_16460 PF03466 LysR substrate binding domain M2J07_16460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_16475 PF13193 AMP-binding enzyme C-terminal domain M2J07_16475 PF00501 AMP-binding enzyme M2J07_16480 PF00575 S1 RNA binding domain M2J07_16480 PF10150 Ribonuclease E/G family M2J07_16480 PF12111 Polyribonucleotide phosphorylase C terminal M2J07_16485 PF01479 S4 domain M2J07_16485 PF00849 RNA pseudouridylate synthase M2J07_16490 PF13419 Haloacid dehalogenase-like hydrolase M2J07_16495 PF08279 HTH domain M2J07_16495 PF13280 WYL domain M2J07_16500 PF02798 Glutathione S-transferase, N-terminal domain M2J07_16510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_16510 PF03466 LysR substrate binding domain M2J07_16515 PF12706 Beta-lactamase superfamily domain M2J07_16520 PF00141 Peroxidase M2J07_16525 PF01590 GAF domain M2J07_16525 PF05524 PEP-utilising enzyme, N-terminal M2J07_16525 PF00391 PEP-utilising enzyme, mobile domain M2J07_16525 PF02896 PEP-utilising enzyme, TIM barrel domain M2J07_16530 PF00293 NUDIX domain M2J07_16550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_16550 PF03466 LysR substrate binding domain M2J07_16560 PF00330 Aconitase family (aconitate hydratase) M2J07_16565 PF00694 Aconitase C-terminal domain M2J07_16575 PF00180 Isocitrate/isopropylmalate dehydrogenase M2J07_16590 PF01176 Translation initiation factor 1A / IF-1 M2J07_16600 PF01416 tRNA pseudouridine synthase M2J07_16620 PF01118 Semialdehyde dehydrogenase, NAD binding domain M2J07_16620 PF02774 Semialdehyde dehydrogenase, dimerisation domain M2J07_16630 PF00375 Sodium:dicarboxylate symporter family M2J07_16640 PF03279 Bacterial lipid A biosynthesis acyltransferase M2J07_16645 PF01810 LysE type translocator M2J07_16650 PF00005 ABC transporter M2J07_16650 PF16326 ABC transporter C-terminal domain M2J07_16650 PF12848 ABC transporter M2J07_16655 PF04102 SlyX M2J07_16660 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_16660 PF00107 Zinc-binding dehydrogenase M2J07_16665 PF01638 HxlR-like helix-turn-helix M2J07_16675 PF08272 Topoisomerase I zinc-ribbon-like M2J07_16675 PF01131 DNA topoisomerase M2J07_16675 PF01396 Topoisomerase DNA binding C4 zinc finger M2J07_16675 PF01751 Toprim domain M2J07_16690 PF13361 UvrD-like helicase C-terminal domain M2J07_16690 PF00580 UvrD/REP helicase N-terminal domain M2J07_16695 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M2J07_16715 PF00999 Sodium/hydrogen exchanger family M2J07_16715 PF02254 TrkA-N domain M2J07_16720 PF00471 Ribosomal protein L33 M2J07_16725 PF00830 Ribosomal L28 family M2J07_16730 PF00171 Aldehyde dehydrogenase family M2J07_16740 PF01842 ACT domain M2J07_16740 PF00551 Formyl transferase M2J07_16750 PF01618 MotA/TolQ/ExbB proton channel family M2J07_16760 PF01625 Peptide methionine sulfoxide reductase M2J07_16770 PF00186 Dihydrofolate reductase M2J07_16775 PF00303 Thymidylate synthase M2J07_16790 PF01790 Prolipoprotein diacylglyceryl transferase M2J07_16810 PF00902 Sec-independent protein translocase protein (TatC) M2J07_16815 PF02416 mttA/Hcf106 family M2J07_16820 PF02416 mttA/Hcf106 family M2J07_16830 PF01725 Ham1 family M2J07_16840 PF00561 alpha/beta hydrolase fold M2J07_16840 PF07021 Methionine biosynthesis protein MetW M2J07_16845 PF00561 alpha/beta hydrolase fold M2J07_16850 PF00682 HMGL-like M2J07_16850 PF08502 LeuA allosteric (dimerisation) domain M2J07_16855 PF13640 2OG-Fe(II) oxygenase superfamily M2J07_16855 PF18331 PKHD-type hydroxylase C-terminal domain M2J07_16860 PF07715 TonB-dependent Receptor Plug Domain M2J07_16860 PF00593 TonB dependent receptor M2J07_16865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M2J07_16865 PF05698 Bacterial trigger factor protein (TF) C-terminus M2J07_16865 PF05697 Bacterial trigger factor protein (TF) M2J07_16870 PF00574 Clp protease M2J07_16875 PF10431 C-terminal, D2-small domain, of ClpB protein M2J07_16875 PF06689 ClpX C4-type zinc finger M2J07_16875 PF07724 AAA domain (Cdc48 subfamily) M2J07_16890 PF05681 Fumarate hydratase (Fumerase) M2J07_16890 PF05683 Fumarase C-terminus M2J07_16895 PF07085 DRTGG domain M2J07_16895 PF01515 Phosphate acetyl/butaryl transferase M2J07_16900 PF00871 Acetokinase family M2J07_16905 PF00920 Dehydratase family M2J07_16910 PF01081 KDPG and KHG aldolase M2J07_16915 PF02447 GntP family permease M2J07_16920 PF01202 Shikimate kinase M2J07_16925 PF00171 Aldehyde dehydrogenase family M2J07_16930 PF00171 Aldehyde dehydrogenase family M2J07_16935 PF00561 alpha/beta hydrolase fold M2J07_16945 PF00933 Glycosyl hydrolase family 3 N terminal domain M2J07_16950 PF03572 Peptidase family S41 M2J07_16950 PF00595 PDZ domain M2J07_16950 PF11818 C-terminal domain of tail specific protease (DUF3340) M2J07_16950 PF17804 Tail specific protease N-terminal domain M2J07_16955 PF13439 Glycosyltransferase Family 4 M2J07_16955 PF00534 Glycosyl transferases group 1 M2J07_16960 PF01569 PAP2 superfamily M2J07_16965 PF04384 Iron-sulphur cluster assembly M2J07_16970 PF00334 Nucleoside diphosphate kinase M2J07_16975 PF04055 Radical SAM superfamily M2J07_16985 PF13464 Domain of unknown function (DUF4115) M2J07_16990 PF04551 GcpE protein M2J07_16995 PF03129 Anticodon binding domain M2J07_16995 PF13393 Histidyl-tRNA synthetase M2J07_17005 PF13360 PQQ-like domain M2J07_17010 PF01926 50S ribosome-binding GTPase M2J07_17010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M2J07_17025 PF00550 Phosphopantetheine attachment site M2J07_17030 PF00550 Phosphopantetheine attachment site M2J07_17040 PF00501 AMP-binding enzyme M2J07_17040 PF13193 AMP-binding enzyme C-terminal domain M2J07_17055 PF00221 Aromatic amino acid lyase M2J07_17075 PF04820 Tryptophan halogenase M2J07_17085 PF00109 Beta-ketoacyl synthase, N-terminal domain M2J07_17085 PF02801 Beta-ketoacyl synthase, C-terminal domain M2J07_17100 PF00109 Beta-ketoacyl synthase, N-terminal domain M2J07_17100 PF02801 Beta-ketoacyl synthase, C-terminal domain M2J07_17115 PF02556 Preprotein translocase subunit SecB M2J07_17120 PF00462 Glutaredoxin M2J07_17130 PF03193 RsgA GTPase M2J07_17135 PF00929 Exonuclease M2J07_17150 PF02321 Outer membrane efflux protein M2J07_17155 PF00005 ABC transporter M2J07_17155 PF02687 FtsX-like permease family M2J07_17155 PF12704 MacB-like periplasmic core domain M2J07_17160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M2J07_17175 PF00133 tRNA synthetases class I (I, L, M and V) M2J07_17175 PF13603 Leucyl-tRNA synthetase, Domain 2 M2J07_17175 PF09334 tRNA synthetases class I (M) M2J07_17175 PF08264 Anticodon-binding domain of tRNA M2J07_17185 PF00205 Thiamine pyrophosphate enzyme, central domain M2J07_17185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M2J07_17185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M2J07_17190 PF10369 Small subunit of acetolactate synthase M2J07_17195 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M2J07_17195 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M2J07_17200 PF00563 EAL domain M2J07_17200 PF00990 Diguanylate cyclase, GGDEF domain M2J07_17200 PF03707 Bacterial signalling protein N terminal repeat M2J07_17225 PF00009 Elongation factor Tu GTP binding domain M2J07_17225 PF16658 Class II release factor RF3, C-terminal domain M2J07_17225 PF03144 Elongation factor Tu domain 2 M2J07_17240 PF01026 TatD related DNase M2J07_17245 PF00330 Aconitase family (aconitate hydratase) M2J07_17245 PF00694 Aconitase C-terminal domain M2J07_17255 PF00899 ThiF family M2J07_17265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_17265 PF03466 LysR substrate binding domain M2J07_17275 PF01207 Dihydrouridine synthase (Dus) M2J07_17280 PF07690 Major Facilitator Superfamily M2J07_17290 PF00892 EamA-like transporter family M2J07_17295 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M2J07_17295 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M2J07_17300 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M2J07_17305 PF02233 NAD(P) transhydrogenase beta subunit M2J07_17310 PF00106 short chain dehydrogenase M2J07_17320 PF01261 Xylose isomerase-like TIM barrel M2J07_17325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M2J07_17325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M2J07_17330 PF00378 Enoyl-CoA hydratase/isomerase M2J07_17335 PF00072 Response regulator receiver domain M2J07_17335 PF00512 His Kinase A (phospho-acceptor) domain M2J07_17335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M2J07_17335 PF01627 Hpt domain M2J07_17335 PF00672 HAMP domain M2J07_17335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_17340 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_17350 PF05958 tRNA (Uracil-5-)-methyltransferase M2J07_17355 PF13291 ACT domain M2J07_17355 PF04607 Region found in RelA / SpoT proteins M2J07_17355 PF02824 TGS domain M2J07_17365 PF03819 MazG nucleotide pyrophosphohydrolase domain M2J07_17375 PF01743 Poly A polymerase head domain M2J07_17375 PF12626 Polymerase A arginine-rich C-terminus M2J07_17375 PF12627 Probable RNA and SrmB- binding site of polymerase A M2J07_17380 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M2J07_17385 PF02548 Ketopantoate hydroxymethyltransferase M2J07_17390 PF02569 Pantoate-beta-alanine ligase M2J07_17395 PF03668 P-loop ATPase protein family M2J07_17400 PF00381 PTS HPr component phosphorylation site M2J07_17405 PF04751 Protein of unknown function (DUF615) M2J07_17410 PF00501 AMP-binding enzyme M2J07_17410 PF13193 AMP-binding enzyme C-terminal domain M2J07_17415 PF03129 Anticodon binding domain M2J07_17415 PF02824 TGS domain M2J07_17415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M2J07_17415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M2J07_17420 PF00707 Translation initiation factor IF-3, C-terminal domain M2J07_17420 PF05198 Translation initiation factor IF-3, N-terminal domain M2J07_17425 PF00043 Glutathione S-transferase, C-terminal domain M2J07_17425 PF02798 Glutathione S-transferase, N-terminal domain M2J07_17430 PF09335 SNARE associated Golgi protein M2J07_17435 PF07690 Major Facilitator Superfamily M2J07_17445 PF01632 Ribosomal protein L35 M2J07_17450 PF00453 Ribosomal protein L20 M2J07_17470 PF01409 tRNA synthetases class II core domain (F) M2J07_17470 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M2J07_17475 PF03483 B3/4 domain M2J07_17475 PF03147 Ferredoxin-fold anticodon binding domain M2J07_17475 PF01588 Putative tRNA binding domain M2J07_17475 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M2J07_17475 PF03484 tRNA synthetase B5 domain M2J07_17480 PF00216 Bacterial DNA-binding protein M2J07_17495 PF07497 Rho termination factor, RNA-binding domain M2J07_17495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M2J07_17495 PF07498 Rho termination factor, N-terminal domain M2J07_17500 PF00085 Thioredoxin M2J07_17505 PF02541 Ppx/GppA phosphatase family M2J07_17510 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M2J07_17515 PF01171 PP-loop family M2J07_17515 PF09179 TilS substrate binding domain M2J07_17515 PF11734 TilS substrate C-terminal domain M2J07_17520 PF03807 NADP oxidoreductase coenzyme F420-dependent M2J07_17520 PF14748 Pyrroline-5-carboxylate reductase dimerisation M2J07_17540 PF01367 5'-3' exonuclease, C-terminal SAM fold M2J07_17540 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M2J07_17540 PF00476 DNA polymerase family A M2J07_17540 PF01612 3'-5' exonuclease M2J07_17560 PF00437 Type II/IV secretion system protein M2J07_17565 PF02566 OsmC-like protein M2J07_17570 PF01047 MarR family M2J07_17580 PF00795 Carbon-nitrogen hydrolase M2J07_17625 PF04963 Sigma-54 factor, core binding domain M2J07_17625 PF00309 Sigma-54 factor, Activator interacting domain (AID) M2J07_17625 PF04552 Sigma-54, DNA binding domain M2J07_17630 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M2J07_17635 PF01722 BolA-like protein M2J07_17640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M2J07_17645 PF01634 ATP phosphoribosyltransferase M2J07_17650 PF00815 Histidinol dehydrogenase M2J07_17655 PF00155 Aminotransferase class I and II M2J07_17660 PF00425 chorismate binding enzyme M2J07_17660 PF04715 Anthranilate synthase component I, N terminal region M2J07_17700 PF00293 NUDIX domain M2J07_17705 PF00132 Bacterial transferase hexapeptide (six repeats) M2J07_17710 PF00814 Glycoprotease family M2J07_17715 PF04445 Putative SAM-dependent methyltransferase M2J07_17725 PF00756 Putative esterase M2J07_17735 PF00834 Ribulose-phosphate 3 epimerase family M2J07_17750 PF00394 Multicopper oxidase M2J07_17750 PF07731 Multicopper oxidase M2J07_17750 PF07732 Multicopper oxidase M2J07_17755 PF05275 Copper resistance protein B precursor (CopB) M2J07_17765 PF00893 Small Multidrug Resistance protein M2J07_17770 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M2J07_17770 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M2J07_17775 PF01960 ArgJ family M2J07_17780 PF02445 Quinolinate synthetase A protein M2J07_17805 PF00962 Adenosine/AMP deaminase M2J07_17810 PF08240 Alcohol dehydrogenase GroES-like domain M2J07_17810 PF00107 Zinc-binding dehydrogenase M2J07_17815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_17815 PF03466 LysR substrate binding domain M2J07_17820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M2J07_17820 PF02770 Acyl-CoA dehydrogenase, middle domain M2J07_17820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M2J07_17825 PF07690 Major Facilitator Superfamily M2J07_17830 PF02515 CoA-transferase family III M2J07_17840 PF00890 FAD binding domain M2J07_17840 PF14537 Cytochrome c3 M2J07_17845 PF03466 LysR substrate binding domain M2J07_17845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_17855 PF07690 Major Facilitator Superfamily M2J07_17860 PF03466 LysR substrate binding domain M2J07_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_17870 PF07687 Peptidase dimerisation domain M2J07_17870 PF01546 Peptidase family M20/M25/M40 M2J07_17875 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M2J07_17875 PF12833 Helix-turn-helix domain M2J07_17885 PF01810 LysE type translocator M2J07_17890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_17890 PF03466 LysR substrate binding domain M2J07_17900 PF01717 Cobalamin-independent synthase, Catalytic domain M2J07_17900 PF08267 Cobalamin-independent synthase, N-terminal domain M2J07_17905 PF01613 Flavin reductase like domain M2J07_17930 PF02567 Phenazine biosynthesis-like protein M2J07_17955 PF13360 PQQ-like domain M2J07_17955 PF01011 PQQ enzyme repeat M2J07_18025 PF13756 Stimulus-sensing domain M2J07_18025 PF13755 Sensor N-terminal transmembrane domain M2J07_18025 PF00512 His Kinase A (phospho-acceptor) domain M2J07_18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_18025 PF00672 HAMP domain M2J07_18035 PF00268 Ribonucleotide reductase, small chain M2J07_18045 PF00317 Ribonucleotide reductase, all-alpha domain M2J07_18045 PF02867 Ribonucleotide reductase, barrel domain M2J07_18045 PF03477 ATP cone domain M2J07_18055 PF00486 Transcriptional regulatory protein, C terminal M2J07_18055 PF00072 Response regulator receiver domain M2J07_18060 PF00512 His Kinase A (phospho-acceptor) domain M2J07_18060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2J07_18060 PF00672 HAMP domain M2J07_18070 PF17151 Periplasmic sensor domain M2J07_18070 PF00990 Diguanylate cyclase, GGDEF domain M2J07_18075 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M2J07_18080 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M2J07_18085 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M2J07_18085 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M2J07_18095 PF10531 SLBB domain M2J07_18095 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M2J07_18095 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M2J07_18100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M2J07_18100 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M2J07_18100 PF00384 Molybdopterin oxidoreductase M2J07_18105 PF00146 NADH dehydrogenase M2J07_18110 PF12838 4Fe-4S dicluster domain M2J07_18115 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M2J07_18120 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M2J07_18125 PF00361 Proton-conducting membrane transporter M2J07_18125 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M2J07_18130 PF00361 Proton-conducting membrane transporter M2J07_18135 PF00361 Proton-conducting membrane transporter M2J07_18145 PF00313 'Cold-shock' DNA-binding domain M2J07_18150 PF03466 LysR substrate binding domain M2J07_18150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_18155 PF00175 Oxidoreductase NAD-binding domain M2J07_18155 PF00970 Oxidoreductase FAD-binding domain M2J07_18170 PF05552 Conserved TM helix M2J07_18185 PF00291 Pyridoxal-phosphate dependent enzyme M2J07_18190 PF13533 Biotin-lipoyl like M2J07_18215 PF09334 tRNA synthetases class I (M) M2J07_18215 PF01588 Putative tRNA binding domain M2J07_18225 PF10609 NUBPL iron-transfer P-loop NTPase M2J07_18230 PF01048 Phosphorylase superfamily M2J07_18245 PF00692 dUTPase M2J07_18275 PF01207 Dihydrouridine synthase (Dus) M2J07_18285 PF00448 SRP54-type protein, GTPase domain M2J07_18285 PF02881 SRP54-type protein, helical bundle domain M2J07_18285 PF02978 Signal peptide binding domain M2J07_18290 PF03309 Type III pantothenate kinase M2J07_18300 PF01925 Sulfite exporter TauE/SafE M2J07_18310 PF06470 SMC proteins Flexible Hinge Domain M2J07_18310 PF02463 RecF/RecN/SMC N terminal domain M2J07_18320 PF00533 BRCA1 C Terminus (BRCT) domain M2J07_18320 PF01653 NAD-dependent DNA ligase adenylation domain M2J07_18320 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M2J07_18320 PF12826 Helix-hairpin-helix motif M2J07_18320 PF03120 NAD-dependent DNA ligase OB-fold domain M2J07_18325 PF00210 Ferritin-like domain M2J07_18330 PF07690 Major Facilitator Superfamily M2J07_18335 PF00982 Glycosyltransferase family 20 M2J07_18340 PF02358 Trehalose-phosphatase M2J07_18345 PF08241 Methyltransferase domain M2J07_18345 PF12697 Alpha/beta hydrolase family M2J07_18350 PF06968 Biotin and Thiamin Synthesis associated domain M2J07_18350 PF04055 Radical SAM superfamily M2J07_18350 PF00202 Aminotransferase class-III M2J07_18355 PF00155 Aminotransferase class I and II M2J07_18370 PF01479 S4 domain M2J07_18370 PF00849 RNA pseudouridylate synthase M2J07_18375 PF04079 Segregation and condensation complex subunit ScpB M2J07_18380 PF02616 Segregation and condensation protein ScpA M2J07_18385 PF01300 Telomere recombination M2J07_18390 PF04315 Elongation factor P hydroxylase M2J07_18395 PF02620 Large ribosomal RNA subunit accumulation protein YceD M2J07_18400 PF01783 Ribosomal L32p protein family M2J07_18405 PF00698 Acyl transferase domain M2J07_18415 PF00550 Phosphopantetheine attachment site M2J07_18420 PF04972 BON domain M2J07_18420 PF01476 LysM domain M2J07_18425 PF08543 Phosphomethylpyrimidine kinase M2J07_18425 PF03070 TENA/THI-4/PQQC family M2J07_18425 PF02581 Thiamine monophosphate synthase M2J07_18435 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M2J07_18450 PF02261 Aspartate decarboxylase M2J07_18455 PF01195 Peptidyl-tRNA hydrolase M2J07_18460 PF01386 Ribosomal L25p family M2J07_18465 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M2J07_18465 PF14572 Phosphoribosyl synthetase-associated domain M2J07_18485 PF00288 GHMP kinases N terminal domain M2J07_18485 PF08544 GHMP kinases C terminal M2J07_18490 PF03550 Outer membrane lipoprotein LolB M2J07_18500 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M2J07_18500 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M2J07_18500 PF01488 Shikimate / quinate 5-dehydrogenase M2J07_18505 PF01807 CHC2 zinc finger M2J07_18505 PF08275 DNA primase catalytic core, N-terminal domain M2J07_18505 PF08278 DNA primase DnaG DnaB-binding M2J07_18505 PF10410 DnaB-helicase binding domain of primase M2J07_18510 PF13525 Outer membrane lipoprotein M2J07_18515 PF00849 RNA pseudouridylate synthase M2J07_18515 PF01479 S4 domain M2J07_18520 PF02578 Multi-copper polyphenol oxidoreductase laccase M2J07_18525 PF03358 NADPH-dependent FMN reductase M2J07_18530 PF01668 SmpB protein M2J07_18535 PF01467 Cytidylyltransferase-like M2J07_18540 PF00037 4Fe-4S binding domain M2J07_18560 PF03466 LysR substrate binding domain M2J07_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2J07_18565 PF00180 Isocitrate/isopropylmalate dehydrogenase M2J07_18570 PF02028 BCCT, betaine/carnitine/choline family transporter M2J07_18575 PF07859 alpha/beta hydrolase fold M2J07_18580 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M2J07_18580 PF00355 Rieske [2Fe-2S] domain M2J07_18585 PF00171 Aldehyde dehydrogenase family M2J07_18590 PF00970 Oxidoreductase FAD-binding domain M2J07_18590 PF00175 Oxidoreductase NAD-binding domain M2J07_18590 PF00111 2Fe-2S iron-sulfur cluster binding domain M2J07_18605 PF02540 NAD synthase M2J07_18605 PF00795 Carbon-nitrogen hydrolase M2J07_18615 PF02678 Pirin M2J07_18615 PF05726 Pirin C-terminal cupin domain M2J07_18620 PF03653 Uncharacterised protein family (UPF0093) M2J07_18625 PF00109 Beta-ketoacyl synthase, N-terminal domain M2J07_18625 PF02801 Beta-ketoacyl synthase, C-terminal domain M2J07_18635 PF00164 Ribosomal protein S12/S23 M2J07_18640 PF00177 Ribosomal protein S7p/S5e M2J07_18645 PF03764 Elongation factor G, domain IV M2J07_18645 PF00009 Elongation factor Tu GTP binding domain M2J07_18645 PF00679 Elongation factor G C-terminus M2J07_18645 PF14492 Elongation Factor G, domain II M2J07_18645 PF03144 Elongation factor Tu domain 2 M2J07_18650 PF03144 Elongation factor Tu domain 2 M2J07_18650 PF03143 Elongation factor Tu C-terminal domain M2J07_18650 PF00009 Elongation factor Tu GTP binding domain M2J07_18665 PF00583 Acetyltransferase (GNAT) family M2J07_18670 PF04377 Arginine-tRNA-protein transferase, C terminus M2J07_18670 PF04376 Arginine-tRNA-protein transferase, N terminus M2J07_18675 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M2J07_18680 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2J07_18685 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M2J07_18685 PF17854 FtsK alpha domain M2J07_18685 PF09397 Ftsk gamma domain M2J07_18685 PF01580 FtsK/SpoIIIE family M2J07_18690 PF01810 LysE type translocator M2J07_18705 PF03776 Septum formation topological specificity factor MinE M2J07_18710 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M2J07_18715 PF03775 Septum formation inhibitor MinC, C-terminal domain M2J07_18725 PF01553 Acyltransferase M2J07_18730 PF00691 OmpA family M2J07_18730 PF13488 Glycine zipper M2J07_18735 PF00580 UvrD/REP helicase N-terminal domain M2J07_18735 PF13361 UvrD-like helicase C-terminal domain M2J07_18740 PF00692 dUTPase M2J07_18745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M2J07_18745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M2J07_18745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M2J07_18745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M2J07_18750 PF00696 Amino acid kinase family M2J07_18760 PF13230 Glutamine amidotransferases class-II M2J07_18765 PF01814 Hemerythrin HHE cation binding domain M2J07_18775 PF03658 RnfH family Ubiquitin M2J07_18780 PF04355 SmpA / OmlA family M2J07_18785 PF01475 Ferric uptake regulator family M2J07_18790 PF00437 Type II/IV secretion system protein M2J07_18795 PF00437 Type II/IV secretion system protein M2J07_18800 PF01168 Alanine racemase, N-terminal domain M2J07_18810 PF00149 Calcineurin-like phosphoesterase M2J07_18810 PF12320 Type 5 capsule protein repressor C-terminal domain