locus-tag class description AYR69_00005 PF11638 DnaA N-terminal domain AYR69_00005 PF08299 Bacterial dnaA protein helix-turn-helix AYR69_00005 PF00308 Bacterial dnaA protein AYR69_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AYR69_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AYR69_00010 PF02767 DNA polymerase III beta subunit, central domain AYR69_00015 PF02463 RecF/RecN/SMC N terminal domain AYR69_00020 PF00204 DNA gyrase B AYR69_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AYR69_00020 PF18053 DNA gyrase B subunit insert domain AYR69_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_00020 PF01751 Toprim domain AYR69_00030 PF09335 SNARE associated Golgi protein AYR69_00035 PF12848 ABC transporter AYR69_00035 PF00005 ABC transporter AYR69_00055 PF01521 Iron-sulphur cluster biosynthesis AYR69_00060 PF00561 alpha/beta hydrolase fold AYR69_00065 PF03702 Anhydro-N-acetylmuramic acid kinase AYR69_00070 PF00579 tRNA synthetases class I (W and Y) AYR69_00110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR69_00115 PF01252 Signal peptidase (SPase) II AYR69_00120 PF06827 Zinc finger found in FPG and IleRS AYR69_00120 PF00133 tRNA synthetases class I (I, L, M and V) AYR69_00120 PF08264 Anticodon-binding domain of tRNA AYR69_00125 PF06574 FAD synthetase AYR69_00125 PF01687 Riboflavin kinase AYR69_00135 PF01048 Phosphorylase superfamily AYR69_00140 PF08362 YcdC-like protein, C-terminal region AYR69_00140 PF00440 Bacterial regulatory proteins, tetR family AYR69_00145 PF00005 ABC transporter AYR69_00150 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_00155 PF00296 Luciferase-like monooxygenase AYR69_00160 PF09084 NMT1/THI5 like AYR69_00165 PF09084 NMT1/THI5 like AYR69_00170 PF00583 Acetyltransferase (GNAT) family AYR69_00170 PF00696 Amino acid kinase family AYR69_00185 PF00106 short chain dehydrogenase AYR69_00190 PF13419 Haloacid dehalogenase-like hydrolase AYR69_00200 PF01323 DSBA-like thioredoxin domain AYR69_00205 PF00440 Bacterial regulatory proteins, tetR family AYR69_00205 PF08360 QacR-like protein, C-terminal region AYR69_00210 PF00440 Bacterial regulatory proteins, tetR family AYR69_00215 PF00175 Oxidoreductase NAD-binding domain AYR69_00220 PF00487 Fatty acid desaturase AYR69_00225 PF03725 3' exoribonuclease family, domain 2 AYR69_00225 PF01138 3' exoribonuclease family, domain 1 AYR69_00240 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYR69_00240 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYR69_00245 PF01510 N-acetylmuramoyl-L-alanine amidase AYR69_00250 PF03023 Lipid II flippase MurJ AYR69_00255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR69_00255 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYR69_00260 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYR69_00260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR69_00265 PF13807 G-rich domain on putative tyrosine kinase AYR69_00265 PF13614 AAA domain AYR69_00265 PF02706 Chain length determinant protein AYR69_00270 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYR69_00275 PF02563 Polysaccharide biosynthesis/export protein AYR69_00275 PF10531 SLBB domain AYR69_00275 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AYR69_00280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYR69_00280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYR69_00280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYR69_00285 PF16363 GDP-mannose 4,6 dehydratase AYR69_00290 PF00483 Nucleotidyl transferase AYR69_00295 PF05523 WxcM-like, C-terminal AYR69_00305 PF01575 MaoC like domain AYR69_00310 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYR69_00320 PF00535 Glycosyl transferase family 2 AYR69_00325 PF00534 Glycosyl transferases group 1 AYR69_00325 PF00862 Sucrose synthase AYR69_00335 PF00534 Glycosyl transferases group 1 AYR69_00340 PF00535 Glycosyl transferase family 2 AYR69_00345 PF02397 Bacterial sugar transferase AYR69_00350 PF00483 Nucleotidyl transferase AYR69_00355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYR69_00355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYR69_00355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYR69_00360 PF00342 Phosphoglucose isomerase AYR69_00365 PF16363 GDP-mannose 4,6 dehydratase AYR69_00375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR69_00375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR69_00375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR69_00375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR69_00380 PF02652 L-lactate permease AYR69_00385 PF00392 Bacterial regulatory proteins, gntR family AYR69_00385 PF07729 FCD domain AYR69_00390 PF01070 FMN-dependent dehydrogenase AYR69_00395 PF01565 FAD binding domain AYR69_00395 PF09330 D-lactate dehydrogenase, membrane binding AYR69_00400 PF00155 Aminotransferase class I and II AYR69_00405 PF07729 FCD domain AYR69_00405 PF00392 Bacterial regulatory proteins, gntR family AYR69_00415 PF00285 Citrate synthase, C-terminal domain AYR69_00420 PF00694 Aconitase C-terminal domain AYR69_00420 PF00330 Aconitase family (aconitate hydratase) AYR69_00435 PF13276 HTH-like domain AYR69_00435 PF13333 Integrase core domain AYR69_00435 PF00665 Integrase core domain AYR69_00440 PF01527 Transposase AYR69_00455 PF00849 RNA pseudouridylate synthase AYR69_00470 PF00593 TonB dependent receptor AYR69_00470 PF07715 TonB-dependent Receptor Plug Domain AYR69_00480 PF01037 Lrp/AsnC ligand binding domain AYR69_00485 PF01266 FAD dependent oxidoreductase AYR69_00490 PF00842 Alanine racemase, C-terminal domain AYR69_00490 PF01168 Alanine racemase, N-terminal domain AYR69_00495 PF01042 Endoribonuclease L-PSP AYR69_00500 PF00324 Amino acid permease AYR69_00505 PF00324 Amino acid permease AYR69_00515 PF00171 Aldehyde dehydrogenase family AYR69_00520 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR69_00520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR69_00525 PF13193 AMP-binding enzyme C-terminal domain AYR69_00525 PF00501 AMP-binding enzyme AYR69_00530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_00530 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_00530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_00535 PF00378 Enoyl-CoA hydratase/isomerase AYR69_00540 PF00378 Enoyl-CoA hydratase/isomerase AYR69_00545 PF00083 Sugar (and other) transporter AYR69_00545 PF07690 Major Facilitator Superfamily AYR69_00550 PF00765 Autoinducer synthase AYR69_00560 PF00196 Bacterial regulatory proteins, luxR family AYR69_00560 PF03472 Autoinducer binding domain AYR69_00570 PF12697 Alpha/beta hydrolase family AYR69_00575 PF01648 4'-phosphopantetheinyl transferase superfamily AYR69_00590 PF01722 BolA-like protein AYR69_00600 PF13614 AAA domain AYR69_00615 PF09335 SNARE associated Golgi protein AYR69_00620 PF07681 DoxX AYR69_00625 PF04286 Protein of unknown function (DUF445) AYR69_00630 PF00958 GMP synthase C terminal domain AYR69_00630 PF02540 NAD synthase AYR69_00630 PF00117 Glutamine amidotransferase class-I AYR69_00635 PF13427 Domain of unknown function (DUF4111) AYR69_00635 PF01909 Nucleotidyltransferase domain AYR69_00640 PF03551 Transcriptional regulator PadR-like family AYR69_00650 PF02678 Pirin AYR69_00650 PF05726 Pirin C-terminal cupin domain AYR69_00670 PF05746 DALR anticodon binding domain AYR69_00670 PF03485 Arginyl tRNA synthetase N terminal domain AYR69_00670 PF00750 tRNA synthetases class I (R) AYR69_00675 PF00390 Malic enzyme, N-terminal domain AYR69_00675 PF03949 Malic enzyme, NAD binding domain AYR69_00680 PF04261 Dyp-type peroxidase family AYR69_00685 PF01810 LysE type translocator AYR69_00690 PF00950 ABC 3 transport family AYR69_00695 PF00005 ABC transporter AYR69_00715 PF00119 ATP synthase A chain AYR69_00720 PF00137 ATP synthase subunit C AYR69_00725 PF00430 ATP synthase B/B' CF(0) AYR69_00730 PF00213 ATP synthase delta (OSCP) subunit AYR69_00735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR69_00735 PF00306 ATP synthase alpha/beta chain, C terminal domain AYR69_00735 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYR69_00740 PF00231 ATP synthase AYR69_00745 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYR69_00745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR69_00750 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYR69_00760 PF00255 Glutathione peroxidase AYR69_00770 PF07690 Major Facilitator Superfamily AYR69_00775 PF00440 Bacterial regulatory proteins, tetR family AYR69_00780 PF00892 EamA-like transporter family AYR69_00785 PF01300 Telomere recombination AYR69_00790 PF02481 DNA recombination-mediator protein A AYR69_00790 PF17782 DprA winged helix domain AYR69_00800 PF01327 Polypeptide deformylase AYR69_00825 PF00440 Bacterial regulatory proteins, tetR family AYR69_00860 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_00880 PF03358 NADPH-dependent FMN reductase AYR69_00900 PF11842 Domain of unknown function (DUF3362) AYR69_00900 PF08497 Radical SAM N-terminal AYR69_00900 PF04055 Radical SAM superfamily AYR69_00915 PF11798 IMS family HHH motif AYR69_00915 PF11799 impB/mucB/samB family C-terminal domain AYR69_00915 PF00817 impB/mucB/samB family AYR69_00925 PF07690 Major Facilitator Superfamily AYR69_00930 PF03641 Possible lysine decarboxylase AYR69_00935 PF03741 Integral membrane protein TerC family AYR69_00935 PF03471 Transporter associated domain AYR69_00940 PF02810 SEC-C motif AYR69_00945 PF03458 UPF0126 domain AYR69_00950 PF07690 Major Facilitator Superfamily AYR69_00955 PF00521 DNA gyrase/topoisomerase IV, subunit A AYR69_00955 PF03989 DNA gyrase C-terminal domain, beta-propeller AYR69_00960 PF00501 AMP-binding enzyme AYR69_00960 PF13193 AMP-binding enzyme C-terminal domain AYR69_00975 PF00719 Inorganic pyrophosphatase AYR69_00980 PF03573 outer membrane porin, OprD family AYR69_01000 PF00701 Dihydrodipicolinate synthetase family AYR69_01010 PF00155 Aminotransferase class I and II AYR69_01010 PF00392 Bacterial regulatory proteins, gntR family AYR69_01025 PF00665 Integrase core domain AYR69_01045 PF00582 Universal stress protein family AYR69_01050 PF00916 Sulfate permease family AYR69_01050 PF01740 STAS domain AYR69_01060 PF07690 Major Facilitator Superfamily AYR69_01065 PF02909 Tetracyclin repressor-like, C-terminal domain AYR69_01065 PF00440 Bacterial regulatory proteins, tetR family AYR69_01085 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AYR69_01090 PF01636 Phosphotransferase enzyme family AYR69_01110 PF00543 Nitrogen regulatory protein P-II AYR69_01115 PF00909 Ammonium Transporter Family AYR69_01120 PF03477 ATP cone domain AYR69_01125 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYR69_01125 PF01872 RibD C-terminal domain AYR69_01135 PF00677 Lumazine binding domain AYR69_01155 PF00883 Cytosol aminopeptidase family, catalytic domain AYR69_01155 PF02789 Cytosol aminopeptidase family, N-terminal domain AYR69_01165 PF03739 Lipopolysaccharide export system permease LptF/LptG AYR69_01170 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYR69_01170 PF01676 Metalloenzyme superfamily AYR69_01175 PF03572 Peptidase family S41 AYR69_01175 PF00595 PDZ domain AYR69_01180 PF00072 Response regulator receiver domain AYR69_01180 PF00158 Sigma-54 interaction domain AYR69_01180 PF02954 Bacterial regulatory protein, Fis family AYR69_01185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_01185 PF00512 His Kinase A (phospho-acceptor) domain AYR69_01190 PF00072 Response regulator receiver domain AYR69_01190 PF00196 Bacterial regulatory proteins, luxR family AYR69_01195 PF00768 D-alanyl-D-alanine carboxypeptidase AYR69_01200 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_01205 PF01842 ACT domain AYR69_01205 PF00742 Homoserine dehydrogenase AYR69_01205 PF03447 Homoserine dehydrogenase, NAD binding domain AYR69_01210 PF13098 Thioredoxin-like domain AYR69_01210 PF10411 Disulfide bond isomerase protein N-terminus AYR69_01215 PF02899 Phage integrase, N-terminal SAM-like domain AYR69_01215 PF00589 Phage integrase family AYR69_01225 PF07664 Ferrous iron transport protein B C terminus AYR69_01225 PF02421 Ferrous iron transport protein B AYR69_01225 PF07670 Nucleoside recognition AYR69_01235 PF08245 Mur ligase middle domain AYR69_01235 PF02875 Mur ligase family, glutamate ligase domain AYR69_01240 PF01098 Cell cycle protein AYR69_01245 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR69_01250 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYR69_01255 PF00149 Calcineurin-like phosphoesterase AYR69_01260 PF00293 NUDIX domain AYR69_01265 PF13667 ThiC-associated domain AYR69_01265 PF01964 Radical SAM ThiC family AYR69_01280 PF00892 EamA-like transporter family AYR69_01285 PF02321 Outer membrane efflux protein AYR69_01290 PF01895 PhoU domain AYR69_01295 PF04362 Bacterial Fe(2+) trafficking AYR69_01300 PF14698 Argininosuccinate lyase C-terminal AYR69_01300 PF00206 Lyase AYR69_01305 PF06580 Histidine kinase AYR69_01305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_01305 PF07694 5TMR of 5TMR-LYT AYR69_01310 PF04397 LytTr DNA-binding domain AYR69_01310 PF00072 Response regulator receiver domain AYR69_01315 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AYR69_01315 PF03900 Porphobilinogen deaminase, C-terminal domain AYR69_01340 PF00816 H-NS histone family AYR69_01355 PF00263 Bacterial type II and III secretion system protein AYR69_01355 PF03958 Bacterial type II/III secretion system short domain AYR69_01360 PF12401 Protein of unknown function (DUF2662) AYR69_01360 PF00498 FHA domain AYR69_01365 PF13419 Haloacid dehalogenase-like hydrolase AYR69_01370 PF04715 Anthranilate synthase component I, N terminal region AYR69_01370 PF00425 chorismate binding enzyme AYR69_01395 PF00009 Elongation factor Tu GTP binding domain AYR69_01395 PF03144 Elongation factor Tu domain 2 AYR69_01395 PF03143 Elongation factor Tu C-terminal domain AYR69_01405 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AYR69_01410 PF02357 Transcription termination factor nusG AYR69_01410 PF00467 KOW motif AYR69_01415 PF00298 Ribosomal protein L11, RNA binding domain AYR69_01415 PF03946 Ribosomal protein L11, N-terminal domain AYR69_01420 PF00687 Ribosomal protein L1p/L10e family AYR69_01425 PF00466 Ribosomal protein L10 AYR69_01430 PF16320 Ribosomal protein L7/L12 dimerisation domain AYR69_01430 PF00542 Ribosomal protein L7/L12 C-terminal domain AYR69_01435 PF10385 RNA polymerase beta subunit external 1 domain AYR69_01435 PF04560 RNA polymerase Rpb2, domain 7 AYR69_01435 PF04563 RNA polymerase beta subunit AYR69_01435 PF00562 RNA polymerase Rpb2, domain 6 AYR69_01435 PF04561 RNA polymerase Rpb2, domain 2 AYR69_01435 PF04565 RNA polymerase Rpb2, domain 3 AYR69_01440 PF04997 RNA polymerase Rpb1, domain 1 AYR69_01440 PF04998 RNA polymerase Rpb1, domain 5 AYR69_01440 PF00623 RNA polymerase Rpb1, domain 2 AYR69_01440 PF05000 RNA polymerase Rpb1, domain 4 AYR69_01440 PF04983 RNA polymerase Rpb1, domain 3 AYR69_01460 PF00561 alpha/beta hydrolase fold AYR69_01465 PF13726 Na+-H+ antiporter family AYR69_01465 PF03553 Na+/H+ antiporter family AYR69_01480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_01480 PF00183 Hsp90 protein AYR69_01495 PF01323 DSBA-like thioredoxin domain AYR69_01505 PF09278 MerR, DNA binding AYR69_01505 PF00376 MerR family regulatory protein AYR69_01525 PF00108 Thiolase, N-terminal domain AYR69_01525 PF02803 Thiolase, C-terminal domain AYR69_01530 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR69_01530 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR69_01530 PF00378 Enoyl-CoA hydratase/isomerase AYR69_01550 PF02151 UvrB/uvrC motif AYR69_01550 PF01541 GIY-YIG catalytic domain AYR69_01550 PF08459 UvrC Helix-hairpin-helix N-terminal AYR69_01560 PF01066 CDP-alcohol phosphatidyltransferase AYR69_01565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR69_01565 PF12833 Helix-turn-helix domain AYR69_01565 PF02805 Metal binding domain of Ada AYR69_01565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYR69_01590 PF13533 Biotin-lipoyl like AYR69_01595 PF03652 Holliday junction resolvase AYR69_01600 PF02622 Uncharacterized ACR, COG1678 AYR69_01605 PF02463 RecF/RecN/SMC N terminal domain AYR69_01615 PF06865 Pyrimidine/purine nucleoside phosphorylase AYR69_01620 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYR69_01620 PF00588 SpoU rRNA Methylase family AYR69_01630 PF01121 Dephospho-CoA kinase AYR69_01635 PF06750 Bacterial Peptidase A24 N-terminal domain AYR69_01635 PF01478 Type IV leader peptidase family AYR69_01640 PF00482 Type II secretion system (T2SS), protein F AYR69_01645 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AYR69_01645 PF00437 Type II/IV secretion system protein AYR69_01650 PF00121 Triosephosphate isomerase AYR69_01655 PF03840 Preprotein translocase SecG subunit AYR69_01675 PF02576 RimP N-terminal domain AYR69_01675 PF17384 RimP C-terminal SH3 domain AYR69_01680 PF13184 NusA-like KH domain AYR69_01680 PF08529 NusA N-terminal domain AYR69_01680 PF00575 S1 RNA binding domain AYR69_01685 PF04760 Translation initiation factor IF-2, N-terminal region AYR69_01685 PF00009 Elongation factor Tu GTP binding domain AYR69_01685 PF11987 Translation-initiation factor 2 AYR69_01685 PF08364 Bacterial translation initiation factor IF-2 associated region AYR69_01690 PF02033 Ribosome-binding factor A AYR69_01700 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AYR69_01710 PF00361 Proton-conducting membrane transporter AYR69_01715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYR69_01720 PF13244 Domain of unknown function (DUF4040) AYR69_01720 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AYR69_01720 PF00361 Proton-conducting membrane transporter AYR69_01720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYR69_01735 PF01502 Phosphoribosyl-AMP cyclohydrolase AYR69_01740 PF01494 FAD binding domain AYR69_01745 PF03109 ABC1 family AYR69_01755 PF01209 ubiE/COQ5 methyltransferase family AYR69_01765 PF03976 Polyphosphate kinase 2 (PPK2) AYR69_01775 PF17946 RecC C-terminal domain AYR69_01780 PF13361 UvrD-like helicase C-terminal domain AYR69_01780 PF00580 UvrD/REP helicase N-terminal domain AYR69_01780 PF12705 PD-(D/E)XK nuclease superfamily AYR69_01785 PF13538 UvrD-like helicase C-terminal domain AYR69_01795 PF00312 Ribosomal protein S15 AYR69_01800 PF00575 S1 RNA binding domain AYR69_01800 PF01138 3' exoribonuclease family, domain 1 AYR69_01800 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AYR69_01800 PF03725 3' exoribonuclease family, domain 2 AYR69_01800 PF00013 KH domain AYR69_01805 PF01544 CorA-like Mg2+ transporter protein AYR69_01815 PF00226 DnaJ domain AYR69_01815 PF01556 DnaJ C terminal domain AYR69_01825 PF01430 Hsp33 protein AYR69_01830 PF00999 Sodium/hydrogen exchanger family AYR69_01830 PF02254 TrkA-N domain AYR69_01835 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AYR69_01835 PF18074 Primosomal protein N C-terminal domain AYR69_01835 PF17764 3′ DNA-binding domain (3′BD) AYR69_01835 PF00271 Helicase conserved C-terminal domain AYR69_01835 PF00270 DEAD/DEAH box helicase AYR69_01840 PF00482 Type II secretion system (T2SS), protein F AYR69_01845 PF08334 Type II secretion system (T2SS), protein G AYR69_01845 PF07963 Prokaryotic N-terminal methylation motif AYR69_01855 PF01588 Putative tRNA binding domain AYR69_01860 PF00795 Carbon-nitrogen hydrolase AYR69_01865 PF00571 CBS domain AYR69_01865 PF03471 Transporter associated domain AYR69_01870 PF01206 Sulfurtransferase TusA AYR69_01885 PF01177 Asp/Glu/Hydantoin racemase AYR69_01895 PF00762 Ferrochelatase AYR69_01900 PF00753 Metallo-beta-lactamase superfamily AYR69_01905 PF03884 DNA gyrase inhibitor YacG AYR69_01925 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AYR69_01955 PF00905 Penicillin binding protein transpeptidase domain AYR69_01975 PF01197 Ribosomal protein L31 AYR69_01980 PF03109 ABC1 family AYR69_01985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_01985 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR69_01990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_01990 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_01990 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR69_01995 PF01554 MatE AYR69_02005 PF04055 Radical SAM superfamily AYR69_02005 PF06969 HemN C-terminal domain AYR69_02010 PF00106 short chain dehydrogenase AYR69_02015 PF03466 LysR substrate binding domain AYR69_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_02030 PF00501 AMP-binding enzyme AYR69_02030 PF13193 AMP-binding enzyme C-terminal domain AYR69_02035 PF10150 Ribonuclease E/G family AYR69_02035 PF00575 S1 RNA binding domain AYR69_02035 PF12111 Polyribonucleotide phosphorylase C terminal AYR69_02040 PF01479 S4 domain AYR69_02040 PF00849 RNA pseudouridylate synthase AYR69_02045 PF13419 Haloacid dehalogenase-like hydrolase AYR69_02050 PF08279 HTH domain AYR69_02050 PF13280 WYL domain AYR69_02055 PF02798 Glutathione S-transferase, N-terminal domain AYR69_02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_02065 PF03466 LysR substrate binding domain AYR69_02070 PF12706 Beta-lactamase superfamily domain AYR69_02075 PF00141 Peroxidase AYR69_02080 PF05524 PEP-utilising enzyme, N-terminal AYR69_02080 PF00391 PEP-utilising enzyme, mobile domain AYR69_02080 PF02896 PEP-utilising enzyme, TIM barrel domain AYR69_02080 PF01590 GAF domain AYR69_02085 PF00293 NUDIX domain AYR69_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_02105 PF03466 LysR substrate binding domain AYR69_02115 PF00330 Aconitase family (aconitate hydratase) AYR69_02120 PF00694 Aconitase C-terminal domain AYR69_02130 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR69_02145 PF01176 Translation initiation factor 1A / IF-1 AYR69_02155 PF01416 tRNA pseudouridine synthase AYR69_02175 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYR69_02175 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYR69_02185 PF00375 Sodium:dicarboxylate symporter family AYR69_02195 PF03279 Bacterial lipid A biosynthesis acyltransferase AYR69_02200 PF01810 LysE type translocator AYR69_02215 PF00107 Zinc-binding dehydrogenase AYR69_02215 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_02220 PF01638 HxlR-like helix-turn-helix AYR69_02230 PF08272 Topoisomerase I zinc-ribbon-like AYR69_02230 PF01131 DNA topoisomerase AYR69_02230 PF01751 Toprim domain AYR69_02230 PF01396 Topoisomerase DNA binding C4 zinc finger AYR69_02245 PF00580 UvrD/REP helicase N-terminal domain AYR69_02245 PF13361 UvrD-like helicase C-terminal domain AYR69_02250 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AYR69_02270 PF00999 Sodium/hydrogen exchanger family AYR69_02270 PF02254 TrkA-N domain AYR69_02275 PF00471 Ribosomal protein L33 AYR69_02280 PF00830 Ribosomal L28 family AYR69_02285 PF00171 Aldehyde dehydrogenase family AYR69_02295 PF01842 ACT domain AYR69_02295 PF00551 Formyl transferase AYR69_02305 PF01618 MotA/TolQ/ExbB proton channel family AYR69_02315 PF01625 Peptide methionine sulfoxide reductase AYR69_02325 PF00186 Dihydrofolate reductase AYR69_02330 PF00303 Thymidylate synthase AYR69_02345 PF01790 Prolipoprotein diacylglyceryl transferase AYR69_02365 PF00902 Sec-independent protein translocase protein (TatC) AYR69_02370 PF02416 mttA/Hcf106 family AYR69_02375 PF02416 mttA/Hcf106 family AYR69_02385 PF01725 Ham1 family AYR69_02395 PF07021 Methionine biosynthesis protein MetW AYR69_02395 PF00561 alpha/beta hydrolase fold AYR69_02400 PF00561 alpha/beta hydrolase fold AYR69_02405 PF00682 HMGL-like AYR69_02405 PF08502 LeuA allosteric (dimerisation) domain AYR69_02410 PF13640 2OG-Fe(II) oxygenase superfamily AYR69_02410 PF18331 PKHD-type hydroxylase C-terminal domain AYR69_02415 PF00593 TonB dependent receptor AYR69_02415 PF07715 TonB-dependent Receptor Plug Domain AYR69_02420 PF05697 Bacterial trigger factor protein (TF) AYR69_02420 PF05698 Bacterial trigger factor protein (TF) C-terminus AYR69_02420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR69_02425 PF00574 Clp protease AYR69_02430 PF10431 C-terminal, D2-small domain, of ClpB protein AYR69_02430 PF06689 ClpX C4-type zinc finger AYR69_02430 PF07724 AAA domain (Cdc48 subfamily) AYR69_02445 PF05683 Fumarase C-terminus AYR69_02445 PF05681 Fumarate hydratase (Fumerase) AYR69_02450 PF01515 Phosphate acetyl/butaryl transferase AYR69_02450 PF07085 DRTGG domain AYR69_02455 PF00871 Acetokinase family AYR69_02460 PF00920 Dehydratase family AYR69_02465 PF01081 KDPG and KHG aldolase AYR69_02470 PF02447 GntP family permease AYR69_02475 PF01202 Shikimate kinase AYR69_02480 PF00171 Aldehyde dehydrogenase family AYR69_02485 PF00171 Aldehyde dehydrogenase family AYR69_02490 PF00561 alpha/beta hydrolase fold AYR69_02500 PF00933 Glycosyl hydrolase family 3 N terminal domain AYR69_02505 PF11818 C-terminal domain of tail specific protease (DUF3340) AYR69_02505 PF00595 PDZ domain AYR69_02505 PF03572 Peptidase family S41 AYR69_02505 PF17804 Tail specific protease N-terminal domain AYR69_02510 PF00534 Glycosyl transferases group 1 AYR69_02510 PF13439 Glycosyltransferase Family 4 AYR69_02515 PF01569 PAP2 superfamily AYR69_02520 PF04384 Iron-sulphur cluster assembly AYR69_02525 PF00334 Nucleoside diphosphate kinase AYR69_02530 PF04055 Radical SAM superfamily AYR69_02540 PF13464 Domain of unknown function (DUF4115) AYR69_02545 PF04551 GcpE protein AYR69_02550 PF13393 Histidyl-tRNA synthetase AYR69_02550 PF03129 Anticodon binding domain AYR69_02560 PF13360 PQQ-like domain AYR69_02565 PF01926 50S ribosome-binding GTPase AYR69_02565 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYR69_02580 PF00550 Phosphopantetheine attachment site AYR69_02585 PF00550 Phosphopantetheine attachment site AYR69_02595 PF13193 AMP-binding enzyme C-terminal domain AYR69_02595 PF00501 AMP-binding enzyme AYR69_02610 PF00221 Aromatic amino acid lyase AYR69_02630 PF04820 Tryptophan halogenase AYR69_02640 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR69_02640 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR69_02655 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR69_02655 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR69_02670 PF02556 Preprotein translocase subunit SecB AYR69_02675 PF00462 Glutaredoxin AYR69_02685 PF03193 RsgA GTPase AYR69_02690 PF00929 Exonuclease AYR69_02705 PF02321 Outer membrane efflux protein AYR69_02710 PF02687 FtsX-like permease family AYR69_02710 PF00005 ABC transporter AYR69_02710 PF12704 MacB-like periplasmic core domain AYR69_02715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR69_02730 PF08264 Anticodon-binding domain of tRNA AYR69_02730 PF00133 tRNA synthetases class I (I, L, M and V) AYR69_02730 PF13603 Leucyl-tRNA synthetase, Domain 2 AYR69_02730 PF09334 tRNA synthetases class I (M) AYR69_02740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYR69_02740 PF00205 Thiamine pyrophosphate enzyme, central domain AYR69_02740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYR69_02745 PF10369 Small subunit of acetolactate synthase AYR69_02750 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AYR69_02750 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AYR69_02775 PF00009 Elongation factor Tu GTP binding domain AYR69_02775 PF03144 Elongation factor Tu domain 2 AYR69_02775 PF16658 Class II release factor RF3, C-terminal domain AYR69_02790 PF01026 TatD related DNase AYR69_02795 PF00330 Aconitase family (aconitate hydratase) AYR69_02795 PF00694 Aconitase C-terminal domain AYR69_02805 PF00899 ThiF family AYR69_02810 PF03466 LysR substrate binding domain AYR69_02810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_02820 PF01207 Dihydrouridine synthase (Dus) AYR69_02825 PF07690 Major Facilitator Superfamily AYR69_02835 PF00892 EamA-like transporter family AYR69_02840 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AYR69_02840 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AYR69_02845 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AYR69_02850 PF02233 NAD(P) transhydrogenase beta subunit AYR69_02855 PF00106 short chain dehydrogenase AYR69_02865 PF01261 Xylose isomerase-like TIM barrel AYR69_02870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR69_02870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR69_02875 PF00378 Enoyl-CoA hydratase/isomerase AYR69_02880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AYR69_02880 PF01627 Hpt domain AYR69_02880 PF00512 His Kinase A (phospho-acceptor) domain AYR69_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_02880 PF00672 HAMP domain AYR69_02880 PF00072 Response regulator receiver domain AYR69_02885 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_02895 PF05958 tRNA (Uracil-5-)-methyltransferase AYR69_02900 PF04607 Region found in RelA / SpoT proteins AYR69_02900 PF02824 TGS domain AYR69_02900 PF13291 ACT domain AYR69_02910 PF03819 MazG nucleotide pyrophosphohydrolase domain AYR69_02920 PF01743 Poly A polymerase head domain AYR69_02920 PF12626 Polymerase A arginine-rich C-terminus AYR69_02920 PF12627 Probable RNA and SrmB- binding site of polymerase A AYR69_02925 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYR69_02930 PF02548 Ketopantoate hydroxymethyltransferase AYR69_02935 PF02569 Pantoate-beta-alanine ligase AYR69_02940 PF03668 P-loop ATPase protein family AYR69_02945 PF00381 PTS HPr component phosphorylation site AYR69_02950 PF04751 Protein of unknown function (DUF615) AYR69_02955 PF00501 AMP-binding enzyme AYR69_02955 PF13193 AMP-binding enzyme C-terminal domain AYR69_02960 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYR69_02960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR69_02960 PF03129 Anticodon binding domain AYR69_02960 PF02824 TGS domain AYR69_02965 PF05198 Translation initiation factor IF-3, N-terminal domain AYR69_02965 PF00707 Translation initiation factor IF-3, C-terminal domain AYR69_02970 PF02798 Glutathione S-transferase, N-terminal domain AYR69_02970 PF00043 Glutathione S-transferase, C-terminal domain AYR69_02975 PF09335 SNARE associated Golgi protein AYR69_02980 PF07690 Major Facilitator Superfamily AYR69_02985 PF01632 Ribosomal protein L35 AYR69_02990 PF00453 Ribosomal protein L20 AYR69_03010 PF01409 tRNA synthetases class II core domain (F) AYR69_03010 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYR69_03015 PF01588 Putative tRNA binding domain AYR69_03015 PF03147 Ferredoxin-fold anticodon binding domain AYR69_03015 PF03484 tRNA synthetase B5 domain AYR69_03015 PF03483 B3/4 domain AYR69_03015 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AYR69_03020 PF00216 Bacterial DNA-binding protein AYR69_03030 PF07498 Rho termination factor, N-terminal domain AYR69_03030 PF07497 Rho termination factor, RNA-binding domain AYR69_03030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR69_03035 PF00085 Thioredoxin AYR69_03040 PF02541 Ppx/GppA phosphatase family AYR69_03045 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AYR69_03050 PF11734 TilS substrate C-terminal domain AYR69_03050 PF09179 TilS substrate binding domain AYR69_03050 PF01171 PP-loop family AYR69_03055 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYR69_03055 PF03807 NADP oxidoreductase coenzyme F420-dependent AYR69_03060 PF02325 YGGT family AYR69_03065 PF01612 3'-5' exonuclease AYR69_03065 PF01367 5'-3' exonuclease, C-terminal SAM fold AYR69_03065 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYR69_03065 PF00476 DNA polymerase family A AYR69_03085 PF00437 Type II/IV secretion system protein AYR69_03090 PF02566 OsmC-like protein AYR69_03095 PF01047 MarR family AYR69_03105 PF00795 Carbon-nitrogen hydrolase AYR69_03150 PF00309 Sigma-54 factor, Activator interacting domain (AID) AYR69_03150 PF04963 Sigma-54 factor, core binding domain AYR69_03150 PF04552 Sigma-54, DNA binding domain AYR69_03155 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYR69_03160 PF01722 BolA-like protein AYR69_03165 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYR69_03170 PF01634 ATP phosphoribosyltransferase AYR69_03175 PF00815 Histidinol dehydrogenase AYR69_03180 PF00155 Aminotransferase class I and II AYR69_03185 PF00425 chorismate binding enzyme AYR69_03185 PF04715 Anthranilate synthase component I, N terminal region AYR69_03230 PF00293 NUDIX domain AYR69_03235 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_03240 PF00814 Glycoprotease family AYR69_03245 PF04445 Putative SAM-dependent methyltransferase AYR69_03255 PF00756 Putative esterase AYR69_03265 PF00834 Ribulose-phosphate 3 epimerase family AYR69_03280 PF00394 Multicopper oxidase AYR69_03280 PF07731 Multicopper oxidase AYR69_03280 PF07732 Multicopper oxidase AYR69_03285 PF05275 Copper resistance protein B precursor (CopB) AYR69_03295 PF00893 Small Multidrug Resistance protein AYR69_03300 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR69_03300 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYR69_03305 PF01960 ArgJ family AYR69_03310 PF02445 Quinolinate synthetase A protein AYR69_03335 PF00962 Adenosine/AMP deaminase AYR69_03340 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_03340 PF00107 Zinc-binding dehydrogenase AYR69_03345 PF03466 LysR substrate binding domain AYR69_03345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_03350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_03350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_03350 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_03355 PF07690 Major Facilitator Superfamily AYR69_03360 PF02515 CoA-transferase family III AYR69_03370 PF00890 FAD binding domain AYR69_03370 PF14537 Cytochrome c3 AYR69_03375 PF03466 LysR substrate binding domain AYR69_03375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_03385 PF07690 Major Facilitator Superfamily AYR69_03390 PF03466 LysR substrate binding domain AYR69_03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_03400 PF07687 Peptidase dimerisation domain AYR69_03400 PF01546 Peptidase family M20/M25/M40 AYR69_03405 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AYR69_03405 PF12833 Helix-turn-helix domain AYR69_03415 PF01810 LysE type translocator AYR69_03420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_03420 PF03466 LysR substrate binding domain AYR69_03430 PF01717 Cobalamin-independent synthase, Catalytic domain AYR69_03430 PF08267 Cobalamin-independent synthase, N-terminal domain AYR69_03435 PF01613 Flavin reductase like domain AYR69_03460 PF02567 Phenazine biosynthesis-like protein AYR69_03480 PF01011 PQQ enzyme repeat AYR69_03480 PF13360 PQQ-like domain AYR69_03515 PF01527 Transposase AYR69_03520 PF13333 Integrase core domain AYR69_03520 PF00665 Integrase core domain AYR69_03520 PF13276 HTH-like domain AYR69_03565 PF01527 Transposase AYR69_03570 PF00665 Integrase core domain AYR69_03570 PF13276 HTH-like domain AYR69_03570 PF13333 Integrase core domain AYR69_03580 PF13756 Stimulus-sensing domain AYR69_03580 PF13755 Sensor N-terminal transmembrane domain AYR69_03580 PF00512 His Kinase A (phospho-acceptor) domain AYR69_03580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_03580 PF00672 HAMP domain AYR69_03590 PF00268 Ribonucleotide reductase, small chain AYR69_03600 PF00317 Ribonucleotide reductase, all-alpha domain AYR69_03600 PF02867 Ribonucleotide reductase, barrel domain AYR69_03600 PF03477 ATP cone domain AYR69_03610 PF00486 Transcriptional regulatory protein, C terminal AYR69_03610 PF00072 Response regulator receiver domain AYR69_03615 PF00672 HAMP domain AYR69_03615 PF00512 His Kinase A (phospho-acceptor) domain AYR69_03615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_03625 PF00990 Diguanylate cyclase, GGDEF domain AYR69_03625 PF17151 Periplasmic sensor domain AYR69_03630 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AYR69_03635 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYR69_03640 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AYR69_03640 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AYR69_03650 PF10531 SLBB domain AYR69_03650 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYR69_03650 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYR69_03655 PF00384 Molybdopterin oxidoreductase AYR69_03655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR69_03655 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYR69_03660 PF00146 NADH dehydrogenase AYR69_03665 PF12838 4Fe-4S dicluster domain AYR69_03670 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AYR69_03675 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYR69_03680 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYR69_03680 PF00361 Proton-conducting membrane transporter AYR69_03685 PF00361 Proton-conducting membrane transporter AYR69_03690 PF00361 Proton-conducting membrane transporter AYR69_03700 PF00313 'Cold-shock' DNA-binding domain AYR69_03705 PF03466 LysR substrate binding domain AYR69_03705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_03710 PF00175 Oxidoreductase NAD-binding domain AYR69_03710 PF00970 Oxidoreductase FAD-binding domain AYR69_03725 PF05552 Conserved TM helix AYR69_03740 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_03745 PF13533 Biotin-lipoyl like AYR69_03770 PF09334 tRNA synthetases class I (M) AYR69_03770 PF01588 Putative tRNA binding domain AYR69_03780 PF10609 NUBPL iron-transfer P-loop NTPase AYR69_03785 PF01048 Phosphorylase superfamily AYR69_03800 PF00692 dUTPase AYR69_03830 PF01207 Dihydrouridine synthase (Dus) AYR69_03840 PF00448 SRP54-type protein, GTPase domain AYR69_03840 PF02881 SRP54-type protein, helical bundle domain AYR69_03840 PF02978 Signal peptide binding domain AYR69_03845 PF03309 Type III pantothenate kinase AYR69_03855 PF01925 Sulfite exporter TauE/SafE AYR69_03865 PF06470 SMC proteins Flexible Hinge Domain AYR69_03865 PF02463 RecF/RecN/SMC N terminal domain AYR69_03875 PF03120 NAD-dependent DNA ligase OB-fold domain AYR69_03875 PF00533 BRCA1 C Terminus (BRCT) domain AYR69_03875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYR69_03875 PF12826 Helix-hairpin-helix motif AYR69_03875 PF01653 NAD-dependent DNA ligase adenylation domain AYR69_03880 PF00210 Ferritin-like domain AYR69_03885 PF07690 Major Facilitator Superfamily AYR69_03890 PF00982 Glycosyltransferase family 20 AYR69_03895 PF02358 Trehalose-phosphatase AYR69_03900 PF08241 Methyltransferase domain AYR69_03900 PF12697 Alpha/beta hydrolase family AYR69_03905 PF06968 Biotin and Thiamin Synthesis associated domain AYR69_03905 PF04055 Radical SAM superfamily AYR69_03905 PF00202 Aminotransferase class-III AYR69_03910 PF00155 Aminotransferase class I and II AYR69_03925 PF00849 RNA pseudouridylate synthase AYR69_03925 PF01479 S4 domain AYR69_03930 PF04079 Segregation and condensation complex subunit ScpB AYR69_03935 PF02616 Segregation and condensation protein ScpA AYR69_03940 PF01300 Telomere recombination AYR69_03945 PF04315 Elongation factor P hydroxylase AYR69_03950 PF02620 Large ribosomal RNA subunit accumulation protein YceD AYR69_03955 PF01783 Ribosomal L32p protein family AYR69_03960 PF00698 Acyl transferase domain AYR69_03970 PF00550 Phosphopantetheine attachment site AYR69_03975 PF01476 LysM domain AYR69_03975 PF04972 BON domain AYR69_03980 PF02581 Thiamine monophosphate synthase AYR69_03980 PF08543 Phosphomethylpyrimidine kinase AYR69_03980 PF03070 TENA/THI-4/PQQC family AYR69_03990 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYR69_04005 PF02261 Aspartate decarboxylase AYR69_04010 PF01195 Peptidyl-tRNA hydrolase AYR69_04015 PF01386 Ribosomal L25p family AYR69_04020 PF14572 Phosphoribosyl synthetase-associated domain AYR69_04020 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYR69_04045 PF00288 GHMP kinases N terminal domain AYR69_04045 PF08544 GHMP kinases C terminal AYR69_04050 PF03550 Outer membrane lipoprotein LolB AYR69_04060 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AYR69_04060 PF01488 Shikimate / quinate 5-dehydrogenase AYR69_04060 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AYR69_04065 PF08278 DNA primase DnaG DnaB-binding AYR69_04065 PF08275 DNA primase catalytic core, N-terminal domain AYR69_04065 PF01807 CHC2 zinc finger AYR69_04065 PF10410 DnaB-helicase binding domain of primase AYR69_04070 PF13525 Outer membrane lipoprotein AYR69_04075 PF00849 RNA pseudouridylate synthase AYR69_04075 PF01479 S4 domain AYR69_04085 PF03358 NADPH-dependent FMN reductase AYR69_04090 PF01668 SmpB protein AYR69_04095 PF01467 Cytidylyltransferase-like AYR69_04100 PF00037 4Fe-4S binding domain AYR69_04120 PF03466 LysR substrate binding domain AYR69_04120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_04125 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR69_04130 PF02028 BCCT, betaine/carnitine/choline family transporter AYR69_04135 PF07859 alpha/beta hydrolase fold AYR69_04140 PF00355 Rieske [2Fe-2S] domain AYR69_04140 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR69_04145 PF00171 Aldehyde dehydrogenase family AYR69_04150 PF00175 Oxidoreductase NAD-binding domain AYR69_04150 PF00970 Oxidoreductase FAD-binding domain AYR69_04150 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR69_04165 PF00795 Carbon-nitrogen hydrolase AYR69_04165 PF02540 NAD synthase AYR69_04175 PF02678 Pirin AYR69_04175 PF05726 Pirin C-terminal cupin domain AYR69_04185 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR69_04185 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR69_04195 PF00164 Ribosomal protein S12/S23 AYR69_04200 PF00177 Ribosomal protein S7p/S5e AYR69_04205 PF00679 Elongation factor G C-terminus AYR69_04205 PF00009 Elongation factor Tu GTP binding domain AYR69_04205 PF03144 Elongation factor Tu domain 2 AYR69_04205 PF03764 Elongation factor G, domain IV AYR69_04205 PF14492 Elongation Factor G, domain II AYR69_04210 PF03143 Elongation factor Tu C-terminal domain AYR69_04210 PF00009 Elongation factor Tu GTP binding domain AYR69_04210 PF03144 Elongation factor Tu domain 2 AYR69_04225 PF00583 Acetyltransferase (GNAT) family AYR69_04230 PF04377 Arginine-tRNA-protein transferase, C terminus AYR69_04230 PF04376 Arginine-tRNA-protein transferase, N terminus AYR69_04235 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AYR69_04240 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_04245 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AYR69_04245 PF17854 FtsK alpha domain AYR69_04245 PF09397 Ftsk gamma domain AYR69_04245 PF01580 FtsK/SpoIIIE family AYR69_04250 PF01810 LysE type translocator AYR69_04265 PF03776 Septum formation topological specificity factor MinE AYR69_04270 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYR69_04275 PF03775 Septum formation inhibitor MinC, C-terminal domain AYR69_04285 PF01553 Acyltransferase AYR69_04290 PF00691 OmpA family AYR69_04290 PF13488 Glycine zipper AYR69_04295 PF13361 UvrD-like helicase C-terminal domain AYR69_04295 PF00580 UvrD/REP helicase N-terminal domain AYR69_04300 PF00692 dUTPase AYR69_04305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR69_04305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR69_04305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR69_04305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR69_04310 PF00696 Amino acid kinase family AYR69_04320 PF13230 Glutamine amidotransferases class-II AYR69_04325 PF01814 Hemerythrin HHE cation binding domain AYR69_04335 PF03658 RnfH family Ubiquitin AYR69_04340 PF04355 SmpA / OmlA family AYR69_04345 PF01475 Ferric uptake regulator family AYR69_04350 PF00437 Type II/IV secretion system protein AYR69_04355 PF00437 Type II/IV secretion system protein AYR69_04360 PF01168 Alanine racemase, N-terminal domain AYR69_04370 PF12320 Type 5 capsule protein repressor C-terminal domain AYR69_04370 PF00149 Calcineurin-like phosphoesterase AYR69_04390 PF01370 NAD dependent epimerase/dehydratase family AYR69_04390 PF08338 Domain of unknown function (DUF1731) AYR69_04395 PF01266 FAD dependent oxidoreductase AYR69_04400 PF00490 Delta-aminolevulinic acid dehydratase AYR69_04405 PF03061 Thioesterase superfamily AYR69_04410 PF13533 Biotin-lipoyl like AYR69_04415 PF07690 Major Facilitator Superfamily AYR69_04485 PF00929 Exonuclease AYR69_04520 PF01381 Helix-turn-helix AYR69_04520 PF00717 Peptidase S24-like AYR69_04565 PF00145 C-5 cytosine-specific DNA methylase AYR69_04575 PF01695 IstB-like ATP binding protein AYR69_04620 PF07007 Lysozyme inhibitor LprI AYR69_04765 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AYR69_04805 PF00712 DNA polymerase III beta subunit, N-terminal domain AYR69_04805 PF02767 DNA polymerase III beta subunit, central domain AYR69_04805 PF02768 DNA polymerase III beta subunit, C-terminal domain AYR69_04815 PF01527 Transposase AYR69_04820 PF13276 HTH-like domain AYR69_04820 PF13333 Integrase core domain AYR69_04820 PF00665 Integrase core domain AYR69_04900 PF00589 Phage integrase family AYR69_04900 PF13356 Arm DNA-binding domain AYR69_04970 PF07693 KAP family P-loop domain AYR69_04985 PF01026 TatD related DNase AYR69_05005 PF00083 Sugar (and other) transporter AYR69_05010 PF00701 Dihydrodipicolinate synthetase family AYR69_05020 PF08281 Sigma-70, region 4 AYR69_05020 PF04542 Sigma-70 region 2 AYR69_05030 PF00593 TonB dependent receptor AYR69_05030 PF07715 TonB-dependent Receptor Plug Domain AYR69_05050 PF01126 Heme oxygenase AYR69_05075 PF13520 Amino acid permease AYR69_05080 PF02574 Homocysteine S-methyltransferase AYR69_05090 PF06039 Malate:quinone oxidoreductase (Mqo) AYR69_05095 PF00732 GMC oxidoreductase AYR69_05095 PF05199 GMC oxidoreductase AYR69_05100 PF00171 Aldehyde dehydrogenase family AYR69_05105 PF00440 Bacterial regulatory proteins, tetR family AYR69_05105 PF13977 BetI-type transcriptional repressor, C-terminal AYR69_05110 PF02028 BCCT, betaine/carnitine/choline family transporter AYR69_05115 PF02028 BCCT, betaine/carnitine/choline family transporter AYR69_05125 PF03061 Thioesterase superfamily AYR69_05135 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYR69_05135 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYR69_05140 PF00375 Sodium:dicarboxylate symporter family AYR69_05145 PF07152 YaeQ protein AYR69_05150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR69_05155 PF01522 Polysaccharide deacetylase AYR69_05155 PF14883 Hypothetical glycosyl hydrolase family 13 AYR69_05160 PF00535 Glycosyl transferase family 2 AYR69_05170 PF00378 Enoyl-CoA hydratase/isomerase AYR69_05175 PF01695 IstB-like ATP binding protein AYR69_05180 PF08281 Sigma-70, region 4 AYR69_05180 PF00665 Integrase core domain AYR69_05210 PF03412 Peptidase C39 family AYR69_05210 PF00664 ABC transporter transmembrane region AYR69_05210 PF00005 ABC transporter AYR69_05225 PF09339 IclR helix-turn-helix domain AYR69_05225 PF01614 Bacterial transcriptional regulator AYR69_05230 PF00355 Rieske [2Fe-2S] domain AYR69_05240 PF00355 Rieske [2Fe-2S] domain AYR69_05250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR69_05255 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_05255 PF14759 Reductase C-terminal AYR69_05260 PF07690 Major Facilitator Superfamily AYR69_05270 PF12697 Alpha/beta hydrolase family AYR69_05280 PF01958 Domain of unknown function DUF108 AYR69_05280 PF03447 Homoserine dehydrogenase, NAD binding domain AYR69_05285 PF00171 Aldehyde dehydrogenase family AYR69_05290 PF00205 Thiamine pyrophosphate enzyme, central domain AYR69_05290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYR69_05290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYR69_05300 PF07690 Major Facilitator Superfamily AYR69_05305 PF01327 Polypeptide deformylase AYR69_05310 PF04960 Glutaminase AYR69_05315 PF12833 Helix-turn-helix domain AYR69_05315 PF02311 AraC-like ligand binding domain AYR69_05320 PF07690 Major Facilitator Superfamily AYR69_05325 PF01263 Aldose 1-epimerase AYR69_05335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_05335 PF03466 LysR substrate binding domain AYR69_05345 PF07690 Major Facilitator Superfamily AYR69_05350 PF00456 Transketolase, thiamine diphosphate binding domain AYR69_05355 PF02779 Transketolase, pyrimidine binding domain AYR69_05355 PF02780 Transketolase, C-terminal domain AYR69_05360 PF02965 Vitamin B12 dependent methionine synthase, activation domain AYR69_05360 PF00809 Pterin binding enzyme AYR69_05360 PF02574 Homocysteine S-methyltransferase AYR69_05360 PF02310 B12 binding domain AYR69_05360 PF02607 B12 binding domain AYR69_05365 PF01384 Phosphate transporter family AYR69_05370 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_05385 PF03781 Sulfatase-modifying factor enzyme 1 AYR69_05390 PF00884 Sulfatase AYR69_05400 PF01106 NifU-like domain AYR69_05400 PF01521 Iron-sulphur cluster biosynthesis AYR69_05405 PF07715 TonB-dependent Receptor Plug Domain AYR69_05405 PF00593 TonB dependent receptor AYR69_05415 PF00561 alpha/beta hydrolase fold AYR69_05420 PF00484 Carbonic anhydrase AYR69_05425 PF13472 GDSL-like Lipase/Acylhydrolase family AYR69_05430 PF00005 ABC transporter AYR69_05440 PF01694 Rhomboid family AYR69_05445 PF00912 Transglycosylase AYR69_05450 PF17941 Polyphosphate kinase C-terminal domain 1 AYR69_05450 PF13090 Polyphosphate kinase C-terminal domain 2 AYR69_05450 PF02503 Polyphosphate kinase middle domain AYR69_05450 PF13089 Polyphosphate kinase N-terminal domain AYR69_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_05460 PF03466 LysR substrate binding domain AYR69_05465 PF00561 alpha/beta hydrolase fold AYR69_05470 PF18113 Rubredoxin binding C-terminal domain AYR69_05470 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_05475 PF00301 Rubredoxin AYR69_05490 PF01336 OB-fold nucleic acid binding domain AYR69_05490 PF00152 tRNA synthetases class II (D, K and N) AYR69_05495 PF14052 Capsule assembly protein Wzi AYR69_05500 PF01507 Phosphoadenosine phosphosulfate reductase family AYR69_05505 PF00009 Elongation factor Tu GTP binding domain AYR69_05520 PF03600 Citrate transporter AYR69_05530 PF03471 Transporter associated domain AYR69_05530 PF00571 CBS domain AYR69_05530 PF01595 Cyclin M transmembrane N-terminal domain AYR69_05535 PF03466 LysR substrate binding domain AYR69_05535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_05540 PF00463 Isocitrate lyase family AYR69_05555 PF01774 UreD urease accessory protein AYR69_05560 PF00547 Urease, gamma subunit AYR69_05565 PF00699 Urease beta subunit AYR69_05575 PF05194 UreE urease accessory protein, C-terminal domain AYR69_05575 PF02814 UreE urease accessory protein, N-terminal domain AYR69_05580 PF01730 UreF AYR69_05585 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYR69_05600 PF00905 Penicillin binding protein transpeptidase domain AYR69_05600 PF03717 Penicillin-binding Protein dimerisation domain AYR69_05615 PF05191 Adenylate kinase, active site lid AYR69_05620 PF00730 HhH-GPD superfamily base excision DNA repair protein AYR69_05620 PF00633 Helix-hairpin-helix motif AYR69_05620 PF10576 Iron-sulfur binding domain of endonuclease III AYR69_05625 PF04060 Putative Fe-S cluster AYR69_05630 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYR69_05630 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYR69_05640 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AYR69_05645 PF02590 Predicted SPOUT methyltransferase AYR69_05650 PF00004 ATPase family associated with various cellular activities (AAA) AYR69_05650 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYR69_05650 PF05362 Lon protease (S16) C-terminal proteolytic domain AYR69_05655 PF05662 Coiled stalk of trimeric autotransporter adhesin AYR69_05655 PF05658 Head domain of trimeric autotransporter adhesin AYR69_05655 PF03895 YadA-like membrane anchor domain AYR69_05655 PF13018 Extended Signal Peptide of Type V secretion system AYR69_05665 PF01812 5-formyltetrahydrofolate cyclo-ligase family AYR69_05855 PF01527 Transposase AYR69_05860 PF13276 HTH-like domain AYR69_05860 PF00665 Integrase core domain AYR69_05860 PF13333 Integrase core domain AYR69_05910 PF13333 Integrase core domain AYR69_05910 PF00665 Integrase core domain AYR69_05910 PF13276 HTH-like domain AYR69_05915 PF01527 Transposase AYR69_06000 PF01551 Peptidase family M23 AYR69_06000 PF08525 Opacity-associated protein A N-terminal motif AYR69_06000 PF01476 LysM domain AYR69_06010 PF00665 Integrase core domain AYR69_06010 PF13333 Integrase core domain AYR69_06010 PF13276 HTH-like domain AYR69_06015 PF01527 Transposase AYR69_06060 PF13276 HTH-like domain AYR69_06060 PF00665 Integrase core domain AYR69_06060 PF13333 Integrase core domain AYR69_06065 PF01527 Transposase AYR69_06105 PF00557 Metallopeptidase family M24 AYR69_06105 PF05195 Aminopeptidase P, N-terminal domain AYR69_06110 PF01494 FAD binding domain AYR69_06115 PF01494 FAD binding domain AYR69_06125 PF13411 MerR HTH family regulatory protein AYR69_06135 PF01810 LysE type translocator AYR69_06140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_06140 PF03466 LysR substrate binding domain AYR69_06150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYR69_06155 PF02021 Uncharacterised protein family UPF0102 AYR69_06160 PF04972 BON domain AYR69_06170 PF09297 NADH pyrophosphatase zinc ribbon domain AYR69_06170 PF00293 NUDIX domain AYR69_06180 PF00929 Exonuclease AYR69_06185 PF01464 Transglycosylase SLT domain AYR69_06185 PF01476 LysM domain AYR69_06185 PF01464 Transglycosylase SLT domain AYR69_06185 PF01476 LysM domain AYR69_06190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYR69_06195 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_06200 PF12911 N-terminal TM domain of oligopeptide transport permease C AYR69_06200 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_06205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYR69_06205 PF00005 ABC transporter AYR69_06210 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_06210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR69_06215 PF07715 TonB-dependent Receptor Plug Domain AYR69_06215 PF00593 TonB dependent receptor AYR69_06225 PF00929 Exonuclease AYR69_06230 PF01979 Amidohydrolase family AYR69_06235 PF00360 Phytochrome region AYR69_06235 PF00563 EAL domain AYR69_06235 PF01590 GAF domain AYR69_06235 PF00990 Diguanylate cyclase, GGDEF domain AYR69_06240 PF00764 Arginosuccinate synthase AYR69_06245 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_06245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR69_06260 PF05987 Bacterial protein of unknown function (DUF898) AYR69_06265 PF13610 DDE domain AYR69_06270 PF02796 Helix-turn-helix domain of resolvase AYR69_06270 PF00239 Resolvase, N terminal domain AYR69_06280 PF13610 DDE domain AYR69_06285 PF01526 Tn3 transposase DDE domain AYR69_06285 PF13700 Domain of unknown function (DUF4158) AYR69_06290 PF00239 Resolvase, N terminal domain AYR69_06290 PF02796 Helix-turn-helix domain of resolvase AYR69_06295 PF13610 DDE domain AYR69_06305 PF01636 Phosphotransferase enzyme family AYR69_06310 PF13610 DDE domain AYR69_06320 PF00069 Protein kinase domain AYR69_06345 PF03466 LysR substrate binding domain AYR69_06345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_06350 PF00202 Aminotransferase class-III AYR69_06355 PF00171 Aldehyde dehydrogenase family AYR69_06360 PF00324 Amino acid permease AYR69_06390 PF04076 Bacterial OB fold (BOF) protein AYR69_06415 PF00561 alpha/beta hydrolase fold AYR69_06420 PF03616 Sodium/glutamate symporter AYR69_06430 PF00392 Bacterial regulatory proteins, gntR family AYR69_06430 PF07729 FCD domain AYR69_06470 PF13610 DDE domain AYR69_06475 PF01636 Phosphotransferase enzyme family AYR69_06480 PF13610 DDE domain AYR69_06500 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_06505 PF01909 Nucleotidyltransferase domain AYR69_06505 PF13427 Domain of unknown function (DUF4111) AYR69_06510 PF00893 Small Multidrug Resistance protein AYR69_06515 PF00809 Pterin binding enzyme AYR69_06530 PF07091 Ribosomal RNA methyltransferase (FmrO) AYR69_06550 PF01636 Phosphotransferase enzyme family AYR69_06560 PF03050 Transposase IS66 family AYR69_06560 PF13005 zinc-finger binding domain of transposase IS66 AYR69_06560 PF13817 IS66 C-terminal element AYR69_06560 PF13007 Transposase C of IS166 homeodomain AYR69_06580 PF01051 Initiator Replication protein AYR69_06585 PF13610 DDE domain AYR69_06600 PF00375 Sodium:dicarboxylate symporter family AYR69_06610 PF00753 Metallo-beta-lactamase superfamily AYR69_06610 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYR69_06615 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_06620 PF09383 NIL domain AYR69_06620 PF00005 ABC transporter AYR69_06625 PF03180 NLPA lipoprotein AYR69_06630 PF02844 Phosphoribosylglycinamide synthetase, N domain AYR69_06630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AYR69_06630 PF02843 Phosphoribosylglycinamide synthetase, C domain AYR69_06635 PF01808 AICARFT/IMPCHase bienzyme AYR69_06635 PF02142 MGS-like domain AYR69_06640 PF02954 Bacterial regulatory protein, Fis family AYR69_06660 PF13932 GidA associated domain AYR69_06660 PF01134 Glucose inhibited division protein A AYR69_06670 PF14403 Circularly permuted ATP-grasp type 2 AYR69_06680 PF01841 Transglutaminase-like superfamily AYR69_06680 PF08379 Bacterial transglutaminase-like N-terminal region AYR69_06690 PF00842 Alanine racemase, C-terminal domain AYR69_06690 PF01168 Alanine racemase, N-terminal domain AYR69_06695 PF03796 DnaB-like helicase C terminal domain AYR69_06695 PF00772 DnaB-like helicase N terminal domain AYR69_06700 PF01281 Ribosomal protein L9, N-terminal domain AYR69_06700 PF03948 Ribosomal protein L9, C-terminal domain AYR69_06705 PF01084 Ribosomal protein S18 AYR69_06710 PF01250 Ribosomal protein S6 AYR69_06715 PF01040 UbiA prenyltransferase family AYR69_06720 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AYR69_06725 PF00510 Cytochrome c oxidase subunit III AYR69_06730 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYR69_06735 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AYR69_06735 PF06481 COX Aromatic Rich Motif AYR69_06745 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYR69_06745 PF00391 PEP-utilising enzyme, mobile domain AYR69_06745 PF02896 PEP-utilising enzyme, TIM barrel domain AYR69_06750 PF03618 Kinase/pyrophosphorylase AYR69_06760 PF14883 Hypothetical glycosyl hydrolase family 13 AYR69_06760 PF01522 Polysaccharide deacetylase AYR69_06765 PF00535 Glycosyl transferase family 2 AYR69_06770 PF13994 PgaD-like protein AYR69_06780 PF00296 Luciferase-like monooxygenase AYR69_06795 PF03466 LysR substrate binding domain AYR69_06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_06805 PF00472 RF-1 domain AYR69_06805 PF03462 PCRF domain AYR69_06810 PF17827 PrmC N-terminal domain AYR69_06810 PF13847 Methyltransferase domain AYR69_06815 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_06820 PF09084 NMT1/THI5 like AYR69_06825 PF12833 Helix-turn-helix domain AYR69_06830 PF00106 short chain dehydrogenase AYR69_06835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_06835 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_06835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_06840 PF00501 AMP-binding enzyme AYR69_06840 PF13193 AMP-binding enzyme C-terminal domain AYR69_06845 PF01613 Flavin reductase like domain AYR69_06850 PF00899 ThiF family AYR69_06855 PF03109 ABC1 family AYR69_06870 PF03814 Potassium-transporting ATPase A subunit AYR69_06880 PF02669 K+-transporting ATPase, c chain AYR69_06885 PF13493 Domain of unknown function (DUF4118) AYR69_06885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_06885 PF00512 His Kinase A (phospho-acceptor) domain AYR69_06885 PF02702 Osmosensitive K+ channel His kinase sensor domain AYR69_06890 PF00486 Transcriptional regulatory protein, C terminal AYR69_06890 PF00072 Response regulator receiver domain AYR69_06895 PF00120 Glutamine synthetase, catalytic domain AYR69_06905 PF03232 Ubiquinone biosynthesis protein COQ7 AYR69_06910 PF07690 Major Facilitator Superfamily AYR69_06915 PF17243 POTRA domain TamA domain 1 AYR69_06915 PF07244 Surface antigen variable number repeat AYR69_06915 PF01103 Surface antigen AYR69_06930 PF06434 Aconitate hydratase 2 N-terminus AYR69_06930 PF11791 Aconitate B N-terminal domain AYR69_06930 PF00330 Aconitase family (aconitate hydratase) AYR69_06940 PF00520 Ion transport protein AYR69_06940 PF00027 Cyclic nucleotide-binding domain AYR69_06945 PF07690 Major Facilitator Superfamily AYR69_06960 PF03466 LysR substrate binding domain AYR69_06960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_06965 PF04284 Protein of unknown function (DUF441) AYR69_06975 PF00849 RNA pseudouridylate synthase AYR69_06975 PF01479 S4 domain AYR69_06990 PF01479 S4 domain AYR69_06990 PF00849 RNA pseudouridylate synthase AYR69_06995 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AYR69_07000 PF08676 MutL C terminal dimerisation domain AYR69_07000 PF01119 DNA mismatch repair protein, C-terminal domain AYR69_07010 PF17209 Hfq protein AYR69_07020 PF01527 Transposase AYR69_07025 PF13276 HTH-like domain AYR69_07025 PF00665 Integrase core domain AYR69_07025 PF13333 Integrase core domain AYR69_07035 PF00881 Nitroreductase family AYR69_07045 PF00149 Calcineurin-like phosphoesterase AYR69_07050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYR69_07055 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR69_07055 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AYR69_07060 PF02540 NAD synthase AYR69_07060 PF00958 GMP synthase C terminal domain AYR69_07060 PF00117 Glutamine amidotransferase class-I AYR69_07065 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AYR69_07070 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AYR69_07075 PF13520 Amino acid permease AYR69_07080 PF00171 Aldehyde dehydrogenase family AYR69_07095 PF00465 Iron-containing alcohol dehydrogenase AYR69_07100 PF05970 PIF1-like helicase AYR69_07100 PF14493 Helix-turn-helix domain AYR69_07110 PF06445 GyrI-like small molecule binding domain AYR69_07115 PF02110 Hydroxyethylthiazole kinase family AYR69_07130 PF01433 Peptidase family M1 domain AYR69_07130 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AYR69_07130 PF11940 Domain of unknown function (DUF3458) Ig-like fold AYR69_07140 PF00106 short chain dehydrogenase AYR69_07150 PF01817 Chorismate mutase type II AYR69_07155 PF01037 Lrp/AsnC ligand binding domain AYR69_07165 PF00440 Bacterial regulatory proteins, tetR family AYR69_07170 PF00593 TonB dependent receptor AYR69_07170 PF07715 TonB-dependent Receptor Plug Domain AYR69_07175 PF00924 Mechanosensitive ion channel AYR69_07215 PF00593 TonB dependent receptor AYR69_07215 PF07715 TonB-dependent Receptor Plug Domain AYR69_07235 PF12848 ABC transporter AYR69_07235 PF00005 ABC transporter AYR69_07240 PF00582 Universal stress protein family AYR69_07260 PF00689 Cation transporting ATPase, C-terminus AYR69_07260 PF00690 Cation transporter/ATPase, N-terminus AYR69_07265 PF02308 MgtC family AYR69_07270 PF03594 Benzoate membrane transport protein AYR69_07275 PF01037 Lrp/AsnC ligand binding domain AYR69_07280 PF01810 LysE type translocator AYR69_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_07290 PF03466 LysR substrate binding domain AYR69_07300 PF02803 Thiolase, C-terminal domain AYR69_07300 PF00108 Thiolase, N-terminal domain AYR69_07325 PF07690 Major Facilitator Superfamily AYR69_07330 PF12169 DNA polymerase III subunits gamma and tau domain III AYR69_07330 PF12170 DNA polymerase III tau subunit V interacting with alpha AYR69_07330 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AYR69_07335 PF04185 Phosphoesterase family AYR69_07335 PF05506 Domain of unknown function (DUF756) AYR69_07340 PF03061 Thioesterase superfamily AYR69_07345 PF00465 Iron-containing alcohol dehydrogenase AYR69_07355 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYR69_07360 PF01565 FAD binding domain AYR69_07360 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AYR69_07375 PF01645 Conserved region in glutamate synthase AYR69_07395 PF12832 MFS_1 like family AYR69_07405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR69_07405 PF02785 Biotin carboxylase C-terminal domain AYR69_07405 PF00289 Biotin carboxylase, N-terminal domain AYR69_07410 PF00364 Biotin-requiring enzyme AYR69_07415 PF01220 Dehydroquinase class II AYR69_07420 PF11799 impB/mucB/samB family C-terminal domain AYR69_07420 PF00817 impB/mucB/samB family AYR69_07420 PF13438 Domain of unknown function (DUF4113) AYR69_07425 PF00005 ABC transporter AYR69_07430 PF00486 Transcriptional regulatory protein, C terminal AYR69_07430 PF00072 Response regulator receiver domain AYR69_07440 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYR69_07440 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_07440 PF13806 Rieske-like [2Fe-2S] domain AYR69_07440 PF04324 BFD-like [2Fe-2S] binding domain AYR69_07440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYR69_07440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYR69_07445 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYR69_07445 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYR69_07445 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_07445 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYR69_07445 PF04324 BFD-like [2Fe-2S] binding domain AYR69_07450 PF04324 BFD-like [2Fe-2S] binding domain AYR69_07450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR69_07450 PF00384 Molybdopterin oxidoreductase AYR69_07450 PF01568 Molydopterin dinucleotide binding domain AYR69_07455 PF12804 MobA-like NTP transferase domain AYR69_07460 PF01568 Molydopterin dinucleotide binding domain AYR69_07460 PF00384 Molybdopterin oxidoreductase AYR69_07460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR69_07465 PF04055 Radical SAM superfamily AYR69_07465 PF06463 Molybdenum Cofactor Synthesis C AYR69_07475 PF02391 MoaE protein AYR69_07480 PF00994 Probable molybdopterin binding domain AYR69_07480 PF01967 MoaC family AYR69_07485 PF00994 Probable molybdopterin binding domain AYR69_07485 PF03454 MoeA C-terminal region (domain IV) AYR69_07485 PF03453 MoeA N-terminal region (domain I and II) AYR69_07490 PF01638 HxlR-like helix-turn-helix AYR69_07495 PF00392 Bacterial regulatory proteins, gntR family AYR69_07495 PF00155 Aminotransferase class I and II AYR69_07500 PF00892 EamA-like transporter family AYR69_07520 PF02635 DsrE/DsrF-like family AYR69_07525 PF16363 GDP-mannose 4,6 dehydratase AYR69_07530 PF10415 Fumarase C C-terminus AYR69_07530 PF00206 Lyase AYR69_07550 PF01266 FAD dependent oxidoreductase AYR69_07560 PF02542 YgbB family AYR69_07570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYR69_07570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYR69_07575 PF00440 Bacterial regulatory proteins, tetR family AYR69_07580 PF00072 Response regulator receiver domain AYR69_07580 PF02954 Bacterial regulatory protein, Fis family AYR69_07580 PF00158 Sigma-54 interaction domain AYR69_07585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_07585 PF00512 His Kinase A (phospho-acceptor) domain AYR69_07585 PF00989 PAS fold AYR69_07590 PF00919 Uncharacterized protein family UPF0004 AYR69_07590 PF18693 TRAM domain AYR69_07590 PF04055 Radical SAM superfamily AYR69_07595 PF00696 Amino acid kinase family AYR69_07600 PF01765 Ribosome recycling factor AYR69_07605 PF01255 Putative undecaprenyl diphosphate synthase AYR69_07615 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AYR69_07615 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AYR69_07615 PF13288 DXP reductoisomerase C-terminal domain AYR69_07620 PF13180 PDZ domain AYR69_07620 PF02163 Peptidase family M50 AYR69_07620 PF17820 PDZ domain AYR69_07625 PF07244 Surface antigen variable number repeat AYR69_07625 PF01103 Surface antigen AYR69_07635 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYR69_07635 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_07640 PF07977 FabA-like domain AYR69_07645 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_07645 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AYR69_07660 PF02631 RecX family AYR69_07665 PF00154 recA bacterial DNA recombination protein AYR69_07670 PF01479 S4 domain AYR69_07675 PF13419 Haloacid dehalogenase-like hydrolase AYR69_07700 PF01037 Lrp/AsnC ligand binding domain AYR69_07705 PF00266 Aminotransferase class-V AYR69_07710 PF00324 Amino acid permease AYR69_07720 PF00082 Subtilase family AYR69_07720 PF05922 Peptidase inhibitor I9 AYR69_07725 PF01740 STAS domain AYR69_07725 PF00916 Sulfate permease family AYR69_07730 PF02586 SOS response associated peptidase (SRAP) AYR69_07735 PF07995 Glucose / Sorbosone dehydrogenase AYR69_07745 PF00990 Diguanylate cyclase, GGDEF domain AYR69_07745 PF03707 Bacterial signalling protein N terminal repeat AYR69_07745 PF00563 EAL domain AYR69_07765 PF02378 Phosphotransferase system, EIIC AYR69_07765 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AYR69_07770 PF00294 pfkB family carbohydrate kinase AYR69_07775 PF00381 PTS HPr component phosphorylation site AYR69_07775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AYR69_07775 PF02896 PEP-utilising enzyme, TIM barrel domain AYR69_07775 PF00391 PEP-utilising enzyme, mobile domain AYR69_07775 PF05524 PEP-utilising enzyme, N-terminal AYR69_07800 PF05525 Branched-chain amino acid transport protein AYR69_07805 PF00557 Metallopeptidase family M24 AYR69_07810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_07810 PF03466 LysR substrate binding domain AYR69_07820 PF00462 Glutaredoxin AYR69_07825 PF00202 Aminotransferase class-III AYR69_07830 PF00478 IMP dehydrogenase / GMP reductase domain AYR69_07830 PF00571 CBS domain AYR69_07855 PF00448 SRP54-type protein, GTPase domain AYR69_07855 PF02881 SRP54-type protein, helical bundle domain AYR69_07865 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AYR69_07880 PF08173 Membrane bound YbgT-like protein AYR69_07885 PF02322 Cytochrome bd terminal oxidase subunit II AYR69_07890 PF01654 Cytochrome bd terminal oxidase subunit I AYR69_07900 PF13737 Transposase DDE domain AYR69_07905 PF07290 Protein of unknown function (DUF1449) AYR69_07915 PF00294 pfkB family carbohydrate kinase AYR69_07920 PF07715 TonB-dependent Receptor Plug Domain AYR69_07920 PF00593 TonB dependent receptor AYR69_07925 PF00675 Insulinase (Peptidase family M16) AYR69_07925 PF08367 Peptidase M16C associated AYR69_07925 PF05193 Peptidase M16 inactive domain AYR69_07930 PF02253 Phospholipase A1 AYR69_07935 PF02386 Cation transport protein AYR69_07940 PF02080 TrkA-C domain AYR69_07940 PF02254 TrkA-N domain AYR69_07945 PF00585 C-terminal regulatory domain of Threonine dehydratase AYR69_07945 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_07950 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AYR69_07965 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYR69_07965 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYR69_07975 PF02617 ATP-dependent Clp protease adaptor protein ClpS AYR69_07980 PF17871 AAA lid domain AYR69_07980 PF02861 Clp amino terminal domain, pathogenicity island component AYR69_07980 PF07724 AAA domain (Cdc48 subfamily) AYR69_07980 PF10431 C-terminal, D2-small domain, of ClpB protein AYR69_07980 PF00004 ATPase family associated with various cellular activities (AAA) AYR69_07985 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AYR69_07990 PF00793 DAHP synthetase I family AYR69_08005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR69_08005 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_08035 PF06418 CTP synthase N-terminus AYR69_08035 PF00117 Glutamine amidotransferase class-I AYR69_08040 PF00793 DAHP synthetase I family AYR69_08045 PF03952 Enolase, N-terminal domain AYR69_08045 PF00113 Enolase, C-terminal TIM barrel domain AYR69_08050 PF04239 Protein of unknown function (DUF421) AYR69_08055 PF04977 Septum formation initiator AYR69_08060 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AYR69_08065 PF01144 Coenzyme A transferase AYR69_08070 PF01144 Coenzyme A transferase AYR69_08075 PF00108 Thiolase, N-terminal domain AYR69_08075 PF02803 Thiolase, C-terminal domain AYR69_08080 PF00206 Lyase AYR69_08080 PF10397 Adenylosuccinate lyase C-terminus AYR69_08085 PF00561 alpha/beta hydrolase fold AYR69_08090 PF07690 Major Facilitator Superfamily AYR69_08095 PF02627 Carboxymuconolactone decarboxylase family AYR69_08100 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AYR69_08100 PF00775 Dioxygenase AYR69_08105 PF00775 Dioxygenase AYR69_08110 PF01487 Type I 3-dehydroquinase AYR69_08115 PF05048 Periplasmic copper-binding protein (NosD) AYR69_08120 PF04966 Carbohydrate-selective porin, OprB family AYR69_08125 PF13360 PQQ-like domain AYR69_08125 PF01011 PQQ enzyme repeat AYR69_08135 PF04143 Sulphur transport AYR69_08145 PF00753 Metallo-beta-lactamase superfamily AYR69_08150 PF09339 IclR helix-turn-helix domain AYR69_08150 PF01614 Bacterial transcriptional regulator AYR69_08155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_08155 PF03466 LysR substrate binding domain AYR69_08160 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_08160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_08160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_08175 PF00106 short chain dehydrogenase AYR69_08185 PF07690 Major Facilitator Superfamily AYR69_08195 PF01425 Amidase AYR69_08200 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR69_08215 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR69_08215 PF00355 Rieske [2Fe-2S] domain AYR69_08230 PF00175 Oxidoreductase NAD-binding domain AYR69_08230 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR69_08235 PF01613 Flavin reductase like domain AYR69_08240 PF02311 AraC-like ligand binding domain AYR69_08240 PF12833 Helix-turn-helix domain AYR69_08245 PF02727 Copper amine oxidase, N2 domain AYR69_08245 PF07833 Copper amine oxidase N-terminal domain AYR69_08245 PF01179 Copper amine oxidase, enzyme domain AYR69_08245 PF02728 Copper amine oxidase, N3 domain AYR69_08255 PF00171 Aldehyde dehydrogenase family AYR69_08260 PF01804 Penicillin amidase AYR69_08265 PF12146 Serine aminopeptidase, S33 AYR69_08270 PF00108 Thiolase, N-terminal domain AYR69_08270 PF02803 Thiolase, C-terminal domain AYR69_08275 PF01144 Coenzyme A transferase AYR69_08280 PF01144 Coenzyme A transferase AYR69_08285 PF00775 Dioxygenase AYR69_08285 PF04444 Catechol dioxygenase N terminus AYR69_08290 PF02426 Muconolactone delta-isomerase AYR69_08295 PF13378 Enolase C-terminal domain-like AYR69_08295 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYR69_08300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_08300 PF03466 LysR substrate binding domain AYR69_08310 PF07729 FCD domain AYR69_08310 PF00392 Bacterial regulatory proteins, gntR family AYR69_08315 PF00920 Dehydratase family AYR69_08320 PF07690 Major Facilitator Superfamily AYR69_08330 PF00171 Aldehyde dehydrogenase family AYR69_08350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_08350 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_08350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_08360 PF02954 Bacterial regulatory protein, Fis family AYR69_08360 PF00158 Sigma-54 interaction domain AYR69_08360 PF06506 Propionate catabolism activator AYR69_08365 PF13193 AMP-binding enzyme C-terminal domain AYR69_08365 PF00501 AMP-binding enzyme AYR69_08370 PF04341 Protein of unknown function, DUF485 AYR69_08375 PF00474 Sodium:solute symporter family AYR69_08380 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_08380 PF00107 Zinc-binding dehydrogenase AYR69_08385 PF00171 Aldehyde dehydrogenase family AYR69_08395 PF00561 alpha/beta hydrolase fold AYR69_08400 PF00199 Catalase AYR69_08400 PF06628 Catalase-related immune-responsive AYR69_08420 PF07859 alpha/beta hydrolase fold AYR69_08425 PF01047 MarR family AYR69_08430 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_08430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR69_08435 PF00106 short chain dehydrogenase AYR69_08440 PF01872 RibD C-terminal domain AYR69_08445 PF09278 MerR, DNA binding AYR69_08445 PF00376 MerR family regulatory protein AYR69_08455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_08465 PF12706 Beta-lactamase superfamily domain AYR69_08470 PF08359 YsiA-like protein, C-terminal region AYR69_08470 PF00440 Bacterial regulatory proteins, tetR family AYR69_08480 PF00857 Isochorismatase family AYR69_08485 PF03466 LysR substrate binding domain AYR69_08485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_08490 PF07995 Glucose / Sorbosone dehydrogenase AYR69_08495 PF00999 Sodium/hydrogen exchanger family AYR69_08495 PF02254 TrkA-N domain AYR69_08505 PF07687 Peptidase dimerisation domain AYR69_08505 PF01546 Peptidase family M20/M25/M40 AYR69_08510 PF01527 Transposase AYR69_08515 PF13276 HTH-like domain AYR69_08515 PF00665 Integrase core domain AYR69_08515 PF13333 Integrase core domain AYR69_08525 PF17287 POTRA domain AYR69_08525 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AYR69_08525 PF08479 POTRA domain, ShlB-type AYR69_08530 PF04829 Pre-toxin domain with VENN motif AYR69_08530 PF13332 Hemagglutinin repeat AYR69_08530 PF05860 haemagglutination activity domain AYR69_08530 PF13018 Extended Signal Peptide of Type V secretion system AYR69_08545 PF07690 Major Facilitator Superfamily AYR69_08550 PF04909 Amidohydrolase AYR69_08565 PF08450 SMP-30/Gluconolactonase/LRE-like region AYR69_08575 PF03466 LysR substrate binding domain AYR69_08575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_08595 PF07690 Major Facilitator Superfamily AYR69_08600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR69_08600 PF01842 ACT domain AYR69_08600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR69_08605 PF03737 Aldolase/RraA AYR69_08625 PF00529 HlyD membrane-fusion protein of T1SS AYR69_08625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR69_08640 PF00171 Aldehyde dehydrogenase family AYR69_08645 PF00920 Dehydratase family AYR69_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_08655 PF03466 LysR substrate binding domain AYR69_08660 PF01370 NAD dependent epimerase/dehydratase family AYR69_08665 PF07690 Major Facilitator Superfamily AYR69_08670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR69_08670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR69_08675 PF06719 AraC-type transcriptional regulator N-terminus AYR69_08675 PF12833 Helix-turn-helix domain AYR69_08690 PF00107 Zinc-binding dehydrogenase AYR69_08690 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_08705 PF00005 ABC transporter AYR69_08725 PF14572 Phosphoribosyl synthetase-associated domain AYR69_08725 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYR69_08730 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYR69_08800 PF00196 Bacterial regulatory proteins, luxR family AYR69_08805 PF01425 Amidase AYR69_08810 PF13533 Biotin-lipoyl like AYR69_08815 PF07690 Major Facilitator Superfamily AYR69_08840 PF01975 Survival protein SurE AYR69_08850 PF13291 ACT domain AYR69_08850 PF04607 Region found in RelA / SpoT proteins AYR69_08850 PF02824 TGS domain AYR69_08875 PF13737 Transposase DDE domain AYR69_08920 PF12146 Serine aminopeptidase, S33 AYR69_08925 PF02311 AraC-like ligand binding domain AYR69_08925 PF12833 Helix-turn-helix domain AYR69_08935 PF00512 His Kinase A (phospho-acceptor) domain AYR69_08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_08935 PF16527 Two-component sensor protein CpxA, periplasmic domain AYR69_08935 PF00672 HAMP domain AYR69_08940 PF00486 Transcriptional regulatory protein, C terminal AYR69_08940 PF00072 Response regulator receiver domain AYR69_08945 PF00529 HlyD membrane-fusion protein of T1SS AYR69_08945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR69_08950 PF00873 AcrB/AcrD/AcrF family AYR69_08955 PF02321 Outer membrane efflux protein AYR69_08960 PF12146 Serine aminopeptidase, S33 AYR69_08965 PF00743 Flavin-binding monooxygenase-like AYR69_08970 PF01593 Flavin containing amine oxidoreductase AYR69_08985 PF01266 FAD dependent oxidoreductase AYR69_09000 PF00577 Outer membrane usher protein AYR69_09000 PF13953 PapC C-terminal domain AYR69_09000 PF13954 PapC N-terminal domain AYR69_09005 PF00419 Fimbrial protein AYR69_09015 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_09015 PF00107 Zinc-binding dehydrogenase AYR69_09025 PF00199 Catalase AYR69_09040 PF13091 PLD-like domain AYR69_09060 PF01244 Membrane dipeptidase (Peptidase family M19) AYR69_09065 PF13186 Iron-sulfur cluster-binding domain AYR69_09065 PF04055 Radical SAM superfamily AYR69_09070 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AYR69_09075 PF03070 TENA/THI-4/PQQC family AYR69_09080 PF12706 Beta-lactamase superfamily domain AYR69_09085 PF13089 Polyphosphate kinase N-terminal domain AYR69_09085 PF17941 Polyphosphate kinase C-terminal domain 1 AYR69_09085 PF13090 Polyphosphate kinase C-terminal domain 2 AYR69_09085 PF02503 Polyphosphate kinase middle domain AYR69_09090 PF00149 Calcineurin-like phosphoesterase AYR69_09100 PF00550 Phosphopantetheine attachment site AYR69_09100 PF00857 Isochorismatase family AYR69_09105 PF00106 short chain dehydrogenase AYR69_09110 PF03459 TOBE domain AYR69_09110 PF00005 ABC transporter AYR69_09115 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_09125 PF03459 TOBE domain AYR69_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_09130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR69_09130 PF00355 Rieske [2Fe-2S] domain AYR69_09135 PF00866 Ring hydroxylating beta subunit AYR69_09140 PF00970 Oxidoreductase FAD-binding domain AYR69_09140 PF00175 Oxidoreductase NAD-binding domain AYR69_09140 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR69_09145 PF14525 AraC-binding-like domain AYR69_09145 PF12833 Helix-turn-helix domain AYR69_09155 PF01613 Flavin reductase like domain AYR69_09170 PF01738 Dienelactone hydrolase family AYR69_09175 PF07690 Major Facilitator Superfamily AYR69_09180 PF06719 AraC-type transcriptional regulator N-terminus AYR69_09180 PF12833 Helix-turn-helix domain AYR69_09210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_09210 PF03466 LysR substrate binding domain AYR69_09215 PF01144 Coenzyme A transferase AYR69_09220 PF01144 Coenzyme A transferase AYR69_09225 PF02667 Short chain fatty acid transporter AYR69_09230 PF00108 Thiolase, N-terminal domain AYR69_09230 PF02803 Thiolase, C-terminal domain AYR69_09235 PF03466 LysR substrate binding domain AYR69_09235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_09240 PF03466 LysR substrate binding domain AYR69_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_09255 PF00206 Lyase AYR69_09255 PF10415 Fumarase C C-terminus AYR69_09260 PF07715 TonB-dependent Receptor Plug Domain AYR69_09260 PF00593 TonB dependent receptor AYR69_09265 PF00083 Sugar (and other) transporter AYR69_09280 PF00005 ABC transporter AYR69_09285 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_09290 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYR69_09315 PF02525 Flavodoxin-like fold AYR69_09320 PF01638 HxlR-like helix-turn-helix AYR69_09325 PF12833 Helix-turn-helix domain AYR69_09325 PF06445 GyrI-like small molecule binding domain AYR69_09340 PF01925 Sulfite exporter TauE/SafE AYR69_09345 PF00753 Metallo-beta-lactamase superfamily AYR69_09345 PF04273 Putative phosphatase (DUF442) AYR69_09350 PF00753 Metallo-beta-lactamase superfamily AYR69_09350 PF04273 Putative phosphatase (DUF442) AYR69_09355 PF00158 Sigma-54 interaction domain AYR69_09355 PF02954 Bacterial regulatory protein, Fis family AYR69_09355 PF00072 Response regulator receiver domain AYR69_09360 PF01062 Bestrophin, RFP-TM, chloride channel AYR69_09365 PF00107 Zinc-binding dehydrogenase AYR69_09365 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_09370 PF00106 short chain dehydrogenase AYR69_09375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR69_09375 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_09380 PF02817 e3 binding domain AYR69_09380 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR69_09380 PF00364 Biotin-requiring enzyme AYR69_09385 PF02779 Transketolase, pyrimidine binding domain AYR69_09385 PF02780 Transketolase, C-terminal domain AYR69_09390 PF00676 Dehydrogenase E1 component AYR69_09395 PF04055 Radical SAM superfamily AYR69_09410 PF08448 PAS fold AYR69_09410 PF00990 Diguanylate cyclase, GGDEF domain AYR69_09415 PF01264 Chorismate synthase AYR69_09420 PF05175 Methyltransferase small domain AYR69_09425 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_09435 PF17862 AAA+ lid domain AYR69_09435 PF00004 ATPase family associated with various cellular activities (AAA) AYR69_09435 PF01434 Peptidase family M41 AYR69_09445 PF05166 YcgL domain AYR69_09465 PF01612 3'-5' exonuclease AYR69_09465 PF00570 HRDC domain AYR69_09470 PF02132 RecR protein AYR69_09470 PF13662 Toprim domain AYR69_09475 PF02575 YbaB/EbfC DNA-binding family AYR69_09485 PF13737 Transposase DDE domain AYR69_09490 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR69_09495 PF00561 alpha/beta hydrolase fold AYR69_09500 PF08241 Methyltransferase domain AYR69_09530 PF01230 HIT domain AYR69_09565 PF00005 ABC transporter AYR69_09570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR69_09580 PF02684 Lipid-A-disaccharide synthetase AYR69_09585 PF07715 TonB-dependent Receptor Plug Domain AYR69_09585 PF00593 TonB dependent receptor AYR69_09605 PF01925 Sulfite exporter TauE/SafE AYR69_09610 PF00793 DAHP synthetase I family AYR69_09615 PF02654 Cobalamin-5-phosphate synthase AYR69_09630 PF02277 Phosphoribosyltransferase AYR69_09635 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AYR69_09645 PF13419 Haloacid dehalogenase-like hydrolase AYR69_09670 PF07715 TonB-dependent Receptor Plug Domain AYR69_09670 PF00593 TonB dependent receptor AYR69_09685 PF04183 IucA / IucC family AYR69_09685 PF06276 Ferric iron reductase FhuF-like transporter AYR69_09690 PF04183 IucA / IucC family AYR69_09690 PF06276 Ferric iron reductase FhuF-like transporter AYR69_09695 PF07690 Major Facilitator Superfamily AYR69_09700 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYR69_09705 PF06276 Ferric iron reductase FhuF-like transporter AYR69_09705 PF04183 IucA / IucC family AYR69_09710 PF04073 Aminoacyl-tRNA editing domain AYR69_09720 PF03109 ABC1 family AYR69_09725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_09725 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_09725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_09730 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_09730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_09730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_09735 PF00487 Fatty acid desaturase AYR69_09740 PF12833 Helix-turn-helix domain AYR69_09740 PF12852 Cupin AYR69_09745 PF00639 PPIC-type PPIASE domain AYR69_09745 PF09312 SurA N-terminal domain AYR69_09750 PF00216 Bacterial DNA-binding protein AYR69_09765 PF02082 Transcriptional regulator AYR69_09770 PF00266 Aminotransferase class-V AYR69_09775 PF01592 NifU-like N terminal domain AYR69_09780 PF01521 Iron-sulphur cluster biosynthesis AYR69_09785 PF00226 DnaJ domain AYR69_09785 PF07743 HSCB C-terminal oligomerisation domain AYR69_09790 PF00012 Hsp70 protein AYR69_09795 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR69_09800 PF00211 Adenylate and Guanylate cyclase catalytic domain AYR69_09810 PF00270 DEAD/DEAH box helicase AYR69_09810 PF02559 CarD-like/TRCF domain AYR69_09810 PF00271 Helicase conserved C-terminal domain AYR69_09810 PF03461 TRCF domain AYR69_09810 PF17757 UvrB interaction domain AYR69_09840 PF03737 Aldolase/RraA AYR69_09845 PF13460 NAD(P)H-binding AYR69_09850 PF01649 Ribosomal protein S20 AYR69_09860 PF00459 Inositol monophosphatase family AYR69_09875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYR69_09875 PF00005 ABC transporter AYR69_09880 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_09885 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_09890 PF01432 Peptidase family M3 AYR69_09905 PF07715 TonB-dependent Receptor Plug Domain AYR69_09905 PF00593 TonB dependent receptor AYR69_09915 PF01618 MotA/TolQ/ExbB proton channel family AYR69_09920 PF02472 Biopolymer transport protein ExbD/TolR AYR69_09925 PF02472 Biopolymer transport protein ExbD/TolR AYR69_09935 PF01274 Malate synthase AYR69_09940 PF03969 AFG1-like ATPase AYR69_09950 PF00743 Flavin-binding monooxygenase-like AYR69_09960 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AYR69_09970 PF00216 Bacterial DNA-binding protein AYR69_09975 PF00575 S1 RNA binding domain AYR69_09980 PF02224 Cytidylate kinase AYR69_09990 PF14437 MafB19-like deaminase AYR69_10000 PF03167 Uracil DNA glycosylase superfamily AYR69_10010 PF03934 Type II secretion system (T2SS), protein K AYR69_10015 PF07963 Prokaryotic N-terminal methylation motif AYR69_10015 PF11612 Type II secretion system (T2SS), protein J AYR69_10020 PF07963 Prokaryotic N-terminal methylation motif AYR69_10020 PF02501 Type II secretion system (T2SS), protein I AYR69_10035 PF01026 TatD related DNase AYR69_10045 PF09115 DNA polymerase III, delta subunit, C terminal AYR69_10050 PF02348 Cytidylyltransferase AYR69_10055 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AYR69_10060 PF00005 ABC transporter AYR69_10060 PF00664 ABC transporter transmembrane region AYR69_10070 PF01618 MotA/TolQ/ExbB proton channel family AYR69_10075 PF02195 ParB-like nuclease domain AYR69_10075 PF17762 HTH domain found in ParB protein AYR69_10080 PF13614 AAA domain AYR69_10085 PF02527 rRNA small subunit methyltransferase G AYR69_10090 PF00483 Nucleotidyl transferase AYR69_10095 PF01636 Phosphotransferase enzyme family AYR69_10100 PF04453 LPS transport system D AYR69_10100 PF03968 OstA-like protein AYR69_10105 PF09312 SurA N-terminal domain AYR69_10105 PF00639 PPIC-type PPIASE domain AYR69_10110 PF01116 Fructose-bisphosphate aldolase class-II AYR69_10120 PF00162 Phosphoglycerate kinase AYR69_10130 PF02545 Maf-like protein AYR69_10135 PF08007 Cupin superfamily protein AYR69_10150 PF00375 Sodium:dicarboxylate symporter family AYR69_10155 PF06912 Protein of unknown function (DUF1275) AYR69_10160 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AYR69_10165 PF00005 ABC transporter AYR69_10165 PF00664 ABC transporter transmembrane region AYR69_10175 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AYR69_10175 PF12833 Helix-turn-helix domain AYR69_10180 PF01597 Glycine cleavage H-protein AYR69_10185 PF02146 Sir2 family AYR69_10190 PF00474 Sodium:solute symporter family AYR69_10195 PF01037 Lrp/AsnC ligand binding domain AYR69_10200 PF14850 DNA-binding domain of Proline dehydrogenase AYR69_10200 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AYR69_10200 PF01619 Proline dehydrogenase AYR69_10200 PF00171 Aldehyde dehydrogenase family AYR69_10205 PF04229 GrpB protein AYR69_10210 PF05958 tRNA (Uracil-5-)-methyltransferase AYR69_10220 PF09992 Phosphodiester glycosidase AYR69_10230 PF04264 YceI-like domain AYR69_10240 PF02779 Transketolase, pyrimidine binding domain AYR69_10240 PF00456 Transketolase, thiamine diphosphate binding domain AYR69_10240 PF02780 Transketolase, C-terminal domain AYR69_10245 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYR69_10245 PF02772 S-adenosylmethionine synthetase, central domain AYR69_10245 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYR69_10265 PF00905 Penicillin binding protein transpeptidase domain AYR69_10280 PF02075 Crossover junction endodeoxyribonuclease RuvC AYR69_10285 PF03853 YjeF-related protein N-terminus AYR69_10285 PF01256 Carbohydrate kinase AYR69_10290 PF08331 Domain of unknown function (DUF1730) AYR69_10295 PF06968 Biotin and Thiamin Synthesis associated domain AYR69_10295 PF04055 Radical SAM superfamily AYR69_10310 PF16970 Type-1 fimbrial protein, A AYR69_10315 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYR69_10315 PF02753 Pili assembly chaperone PapD, C-terminal domain AYR69_10320 PF00577 Outer membrane usher protein AYR69_10320 PF13954 PapC N-terminal domain AYR69_10320 PF13953 PapC C-terminal domain AYR69_10340 PF00892 EamA-like transporter family AYR69_10350 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYR69_10360 PF03466 LysR substrate binding domain AYR69_10360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_10380 PF00440 Bacterial regulatory proteins, tetR family AYR69_10390 PF01709 Transcriptional regulator AYR69_10395 PF01037 Lrp/AsnC ligand binding domain AYR69_10405 PF00005 ABC transporter AYR69_10410 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_10415 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_10430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_10430 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR69_10440 PF00296 Luciferase-like monooxygenase AYR69_10445 PF03180 NLPA lipoprotein AYR69_10450 PF03180 NLPA lipoprotein AYR69_10455 PF00005 ABC transporter AYR69_10455 PF09383 NIL domain AYR69_10460 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_10465 PF06071 Protein of unknown function (DUF933) AYR69_10465 PF01926 50S ribosome-binding GTPase AYR69_10490 PF03591 AzlC protein AYR69_10495 PF05437 Branched-chain amino acid transport protein (AzlD) AYR69_10505 PF02222 ATP-grasp domain AYR69_10510 PF01909 Nucleotidyltransferase domain AYR69_10510 PF01966 HD domain AYR69_10510 PF08335 GlnD PII-uridylyltransferase AYR69_10515 PF00155 Aminotransferase class I and II AYR69_10525 PF12833 Helix-turn-helix domain AYR69_10525 PF12852 Cupin AYR69_10530 PF00255 Glutathione peroxidase AYR69_10535 PF01641 SelR domain AYR69_10540 PF00155 Aminotransferase class I and II AYR69_10545 PF00375 Sodium:dicarboxylate symporter family AYR69_10550 PF00710 Asparaginase, N-terminal AYR69_10550 PF17763 Glutaminase/Asparaginase C-terminal domain AYR69_10555 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYR69_10555 PF01336 OB-fold nucleic acid binding domain AYR69_10555 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYR69_10555 PF14579 Helix-hairpin-helix motif AYR69_10555 PF02811 PHP domain AYR69_10560 PF00588 SpoU rRNA Methylase family AYR69_10565 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_10580 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_10580 PF13192 Thioredoxin domain AYR69_10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_10595 PF03466 LysR substrate binding domain AYR69_10600 PF01758 Sodium Bile acid symporter family AYR69_10605 PF01022 Bacterial regulatory protein, arsR family AYR69_10610 PF03960 ArsC family AYR69_10620 PF01979 Amidohydrolase family AYR69_10620 PF13382 Adenine deaminase C-terminal domain AYR69_10630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_10630 PF03466 LysR substrate binding domain AYR69_10640 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYR69_10645 PF01177 Asp/Glu/Hydantoin racemase AYR69_10650 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AYR69_10655 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_10660 PF00005 ABC transporter AYR69_10665 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYR69_10675 PF00083 Sugar (and other) transporter AYR69_10680 PF00296 Luciferase-like monooxygenase AYR69_10685 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR69_10685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_10685 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_10695 PF01654 Cytochrome bd terminal oxidase subunit I AYR69_10700 PF02322 Cytochrome bd terminal oxidase subunit II AYR69_10710 PF00392 Bacterial regulatory proteins, gntR family AYR69_10710 PF00155 Aminotransferase class I and II AYR69_10715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_10715 PF03466 LysR substrate binding domain AYR69_10730 PF00698 Acyl transferase domain AYR69_10735 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AYR69_10745 PF01039 Carboxyl transferase domain AYR69_10750 PF06857 Malonate decarboxylase delta subunit (MdcD) AYR69_10755 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AYR69_10760 PF16957 Malonate decarboxylase, alpha subunit, transporter AYR69_10765 PF07690 Major Facilitator Superfamily AYR69_10780 PF00392 Bacterial regulatory proteins, gntR family AYR69_10780 PF00155 Aminotransferase class I and II AYR69_10785 PF04172 LrgB-like family AYR69_10790 PF03788 LrgA family AYR69_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_10795 PF03466 LysR substrate binding domain AYR69_10800 PF14834 Glutathione S-transferase, C-terminal domain AYR69_10800 PF02798 Glutathione S-transferase, N-terminal domain AYR69_10805 PF02798 Glutathione S-transferase, N-terminal domain AYR69_10810 PF03466 LysR substrate binding domain AYR69_10810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_10820 PF00581 Rhodanese-like domain AYR69_10825 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_10835 PF00266 Aminotransferase class-V AYR69_10840 PF01810 LysE type translocator AYR69_10845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_10845 PF03466 LysR substrate binding domain AYR69_10850 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR69_10855 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR69_10860 PF00005 ABC transporter AYR69_10865 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_10870 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_10880 PF00072 Response regulator receiver domain AYR69_10885 PF00512 His Kinase A (phospho-acceptor) domain AYR69_10885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_10885 PF09308 LuxQ, periplasmic AYR69_10885 PF00072 Response regulator receiver domain AYR69_10895 PF01037 Lrp/AsnC ligand binding domain AYR69_10895 PF13404 AsnC-type helix-turn-helix domain AYR69_10905 PF00717 Peptidase S24-like AYR69_10930 PF06628 Catalase-related immune-responsive AYR69_10930 PF18011 C-terminal domain found in long catalases AYR69_10930 PF00199 Catalase AYR69_10940 PF02464 Competence-damaged protein AYR69_10940 PF18146 Damage-inducible protein CinA KH domain AYR69_10940 PF00994 Probable molybdopterin binding domain AYR69_10975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_10975 PF03466 LysR substrate binding domain AYR69_10995 PF13193 AMP-binding enzyme C-terminal domain AYR69_10995 PF00501 AMP-binding enzyme AYR69_11000 PF00440 Bacterial regulatory proteins, tetR family AYR69_11005 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_11005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_11005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_11010 PF01039 Carboxyl transferase domain AYR69_11015 PF00378 Enoyl-CoA hydratase/isomerase AYR69_11020 PF02785 Biotin carboxylase C-terminal domain AYR69_11020 PF00364 Biotin-requiring enzyme AYR69_11020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR69_11020 PF00289 Biotin carboxylase, N-terminal domain AYR69_11025 PF00682 HMGL-like AYR69_11030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_11030 PF03466 LysR substrate binding domain AYR69_11045 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYR69_11045 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_11045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_11045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_11055 PF07690 Major Facilitator Superfamily AYR69_11065 PF01144 Coenzyme A transferase AYR69_11070 PF01144 Coenzyme A transferase AYR69_11075 PF07690 Major Facilitator Superfamily AYR69_11080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_11080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_11080 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_11085 PF00378 Enoyl-CoA hydratase/isomerase AYR69_11095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR69_11095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR69_11095 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AYR69_11100 PF02803 Thiolase, C-terminal domain AYR69_11100 PF00108 Thiolase, N-terminal domain AYR69_11105 PF09339 IclR helix-turn-helix domain AYR69_11110 PF07690 Major Facilitator Superfamily AYR69_11115 PF03060 Nitronate monooxygenase AYR69_11120 PF00378 Enoyl-CoA hydratase/isomerase AYR69_11125 PF09339 IclR helix-turn-helix domain AYR69_11130 PF02515 CoA-transferase family III AYR69_11135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_11135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_11135 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_11140 PF07690 Major Facilitator Superfamily AYR69_11145 PF13419 Haloacid dehalogenase-like hydrolase AYR69_11150 PF00266 Aminotransferase class-V AYR69_11155 PF01266 FAD dependent oxidoreductase AYR69_11160 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_11165 PF08402 TOBE domain AYR69_11165 PF00005 ABC transporter AYR69_11175 PF00392 Bacterial regulatory proteins, gntR family AYR69_11175 PF07702 UTRA domain AYR69_11180 PF01494 FAD binding domain AYR69_11185 PF09339 IclR helix-turn-helix domain AYR69_11185 PF01614 Bacterial transcriptional regulator AYR69_11190 PF02525 Flavodoxin-like fold AYR69_11195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_11195 PF03466 LysR substrate binding domain AYR69_11200 PF02627 Carboxymuconolactone decarboxylase family AYR69_11205 PF00171 Aldehyde dehydrogenase family AYR69_11215 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYR69_11220 PF00171 Aldehyde dehydrogenase family AYR69_11225 PF00296 Luciferase-like monooxygenase AYR69_11230 PF01613 Flavin reductase like domain AYR69_11235 PF12697 Alpha/beta hydrolase family AYR69_11255 PF01292 Prokaryotic cytochrome b561 AYR69_11260 PF00199 Catalase AYR69_11295 PF03061 Thioesterase superfamily AYR69_11300 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_11305 PF07848 PaaX-like protein AYR69_11305 PF08223 PaaX-like protein C-terminal domain AYR69_11310 PF00501 AMP-binding enzyme AYR69_11310 PF14535 AMP-binding enzyme C-terminal domain AYR69_11315 PF00108 Thiolase, N-terminal domain AYR69_11315 PF02803 Thiolase, C-terminal domain AYR69_11320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR69_11320 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AYR69_11320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR69_11325 PF00378 Enoyl-CoA hydratase/isomerase AYR69_11330 PF00378 Enoyl-CoA hydratase/isomerase AYR69_11335 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR69_11335 PF00970 Oxidoreductase FAD-binding domain AYR69_11335 PF00175 Oxidoreductase NAD-binding domain AYR69_11340 PF01883 Iron-sulfur cluster assembly protein AYR69_11345 PF05138 Phenylacetic acid catabolic protein AYR69_11350 PF06243 Phenylacetic acid degradation B AYR69_11355 PF05138 Phenylacetic acid catabolic protein AYR69_11360 PF01575 MaoC like domain AYR69_11360 PF00171 Aldehyde dehydrogenase family AYR69_11365 PF03315 Serine dehydratase beta chain AYR69_11365 PF03313 Serine dehydratase alpha chain AYR69_11370 PF13520 Amino acid permease AYR69_11375 PF00171 Aldehyde dehydrogenase family AYR69_11380 PF00083 Sugar (and other) transporter AYR69_11390 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_11390 PF04324 BFD-like [2Fe-2S] binding domain AYR69_11400 PF01266 FAD dependent oxidoreductase AYR69_11405 PF05544 Proline racemase AYR69_11410 PF00392 Bacterial regulatory proteins, gntR family AYR69_11420 PF00701 Dihydrodipicolinate synthetase family AYR69_11430 PF09278 MerR, DNA binding AYR69_11430 PF00376 MerR family regulatory protein AYR69_11450 PF02677 Epoxyqueuosine reductase QueH AYR69_11465 PF07690 Major Facilitator Superfamily AYR69_11470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYR69_11480 PF03466 LysR substrate binding domain AYR69_11480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_11515 PF01527 Transposase AYR69_11520 PF13276 HTH-like domain AYR69_11520 PF00665 Integrase core domain AYR69_11520 PF13333 Integrase core domain AYR69_11535 PF00691 OmpA family AYR69_11535 PF01389 OmpA-like transmembrane domain AYR69_11600 PF00005 ABC transporter AYR69_11605 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR69_11610 PF01425 Amidase AYR69_11615 PF08753 NikR C terminal nickel binding domain AYR69_11615 PF01402 Ribbon-helix-helix protein, copG family AYR69_11630 PF01638 HxlR-like helix-turn-helix AYR69_11635 PF02525 Flavodoxin-like fold AYR69_11640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR69_11640 PF02785 Biotin carboxylase C-terminal domain AYR69_11640 PF00289 Biotin carboxylase, N-terminal domain AYR69_11655 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_11655 PF13823 Alcohol dehydrogenase GroES-associated AYR69_11655 PF00107 Zinc-binding dehydrogenase AYR69_11665 PF00440 Bacterial regulatory proteins, tetR family AYR69_11690 PF00654 Voltage gated chloride channel AYR69_11695 PF02785 Biotin carboxylase C-terminal domain AYR69_11695 PF00364 Biotin-requiring enzyme AYR69_11695 PF00289 Biotin carboxylase, N-terminal domain AYR69_11695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR69_11705 PF07286 Protein of unknown function (DUF1445) AYR69_11710 PF03746 LamB/YcsF family AYR69_11715 PF01566 Natural resistance-associated macrophage protein AYR69_11720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_11720 PF03466 LysR substrate binding domain AYR69_11735 PF14220 Domain of unknown function (DUF4329) AYR69_11735 PF05593 RHS Repeat AYR69_11735 PF03527 RHS protein AYR69_11740 PF16671 Actin cross-linking domain AYR69_11740 PF04717 Type VI secretion system, phage-baseplate injector AYR69_11750 PF13419 Haloacid dehalogenase-like hydrolase AYR69_11765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR69_11765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR69_11785 PF07690 Major Facilitator Superfamily AYR69_11800 PF03279 Bacterial lipid A biosynthesis acyltransferase AYR69_11805 PF00563 EAL domain AYR69_11805 PF00990 Diguanylate cyclase, GGDEF domain AYR69_11805 PF03707 Bacterial signalling protein N terminal repeat AYR69_11810 PF00892 EamA-like transporter family AYR69_11815 PF01037 Lrp/AsnC ligand binding domain AYR69_11820 PF01624 MutS domain I AYR69_11820 PF00488 MutS domain V AYR69_11820 PF05192 MutS domain III AYR69_11820 PF05188 MutS domain II AYR69_11820 PF05190 MutS family domain IV AYR69_11830 PF00037 4Fe-4S binding domain AYR69_11830 PF11953 Domain of unknown function (DUF3470) AYR69_11840 PF01596 O-methyltransferase AYR69_11850 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_11855 PF01205 Uncharacterized protein family UPF0029 AYR69_11865 PF03412 Peptidase C39 family AYR69_11865 PF00005 ABC transporter AYR69_11865 PF00664 ABC transporter transmembrane region AYR69_11870 PF02321 Outer membrane efflux protein AYR69_11875 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYR69_11875 PF00005 ABC transporter AYR69_11880 PF03968 OstA-like protein AYR69_11895 PF00571 CBS domain AYR69_11895 PF01380 SIS domain AYR69_11900 PF09190 DALR domain AYR69_11900 PF01406 tRNA synthetases class I (C) catalytic domain AYR69_11930 PF01638 HxlR-like helix-turn-helix AYR69_11935 PF07690 Major Facilitator Superfamily AYR69_11955 PF03807 NADP oxidoreductase coenzyme F420-dependent AYR69_11955 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYR69_11965 PF00313 'Cold-shock' DNA-binding domain AYR69_11970 PF01810 LysE type translocator AYR69_12015 PF02601 Exonuclease VII, large subunit AYR69_12015 PF13742 OB-fold nucleic acid binding domain AYR69_12050 PF00376 MerR family regulatory protein AYR69_12050 PF09278 MerR, DNA binding AYR69_12055 PF00403 Heavy-metal-associated domain AYR69_12060 PF00403 Heavy-metal-associated domain AYR69_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_12065 PF03466 LysR substrate binding domain AYR69_12070 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR69_12070 PF00355 Rieske [2Fe-2S] domain AYR69_12075 PF00866 Ring hydroxylating beta subunit AYR69_12080 PF00175 Oxidoreductase NAD-binding domain AYR69_12080 PF00970 Oxidoreductase FAD-binding domain AYR69_12080 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR69_12085 PF00106 short chain dehydrogenase AYR69_12090 PF03594 Benzoate membrane transport protein AYR69_12095 PF07690 Major Facilitator Superfamily AYR69_12105 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYR69_12105 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYR69_12110 PF11898 Domain of unknown function (DUF3418) AYR69_12110 PF00270 DEAD/DEAH box helicase AYR69_12110 PF00271 Helicase conserved C-terminal domain AYR69_12110 PF04408 Helicase associated domain (HA2) AYR69_12110 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AYR69_12115 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYR69_12115 PF00578 AhpC/TSA family AYR69_12135 PF13192 Thioredoxin domain AYR69_12135 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_12145 PF00043 Glutathione S-transferase, C-terminal domain AYR69_12145 PF02798 Glutathione S-transferase, N-terminal domain AYR69_12155 PF02390 Putative methyltransferase AYR69_12160 PF00043 Glutathione S-transferase, C-terminal domain AYR69_12160 PF13417 Glutathione S-transferase, N-terminal domain AYR69_12170 PF13488 Glycine zipper AYR69_12170 PF00691 OmpA family AYR69_12175 PF01979 Amidohydrolase family AYR69_12180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYR69_12180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYR69_12190 PF02926 THUMP domain AYR69_12190 PF10672 S-adenosylmethionine-dependent methyltransferase AYR69_12190 PF01170 Putative RNA methylase family UPF0020 AYR69_12205 PF00004 ATPase family associated with various cellular activities (AAA) AYR69_12205 PF07724 AAA domain (Cdc48 subfamily) AYR69_12205 PF17871 AAA lid domain AYR69_12205 PF02861 Clp amino terminal domain, pathogenicity island component AYR69_12205 PF10431 C-terminal, D2-small domain, of ClpB protein AYR69_12220 PF02566 OsmC-like protein AYR69_12225 PF00027 Cyclic nucleotide-binding domain AYR69_12225 PF13545 Crp-like helix-turn-helix domain AYR69_12240 PF00248 Aldo/keto reductase family AYR69_12255 PF00709 Adenylosuccinate synthetase AYR69_12260 PF13393 Histidyl-tRNA synthetase AYR69_12265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYR69_12265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYR69_12270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYR69_12270 PF01411 tRNA synthetases class II (A) AYR69_12270 PF02272 DHHA1 domain AYR69_12275 PF00696 Amino acid kinase family AYR69_12275 PF13840 ACT domain AYR69_12275 PF01842 ACT domain AYR69_12280 PF02599 Global regulator protein family AYR69_12285 PF01351 Ribonuclease HII AYR69_12295 PF01292 Prokaryotic cytochrome b561 AYR69_12300 PF00962 Adenosine/AMP deaminase AYR69_12305 PF00860 Permease family AYR69_12315 PF00743 Flavin-binding monooxygenase-like AYR69_12320 PF00106 short chain dehydrogenase AYR69_12330 PF02678 Pirin AYR69_12330 PF17954 Quercetinase C-terminal cupin domain AYR69_12335 PF17932 Tetracyclin repressor-like, C-terminal domain AYR69_12335 PF00440 Bacterial regulatory proteins, tetR family AYR69_12345 PF00106 short chain dehydrogenase AYR69_12355 PF13610 DDE domain AYR69_12360 PF00893 Small Multidrug Resistance protein AYR69_12365 PF00809 Pterin binding enzyme AYR69_12375 PF13610 DDE domain AYR69_12395 PF00814 Glycoprotease family AYR69_12400 PF01165 Ribosomal protein S21 AYR69_12405 PF09424 Yqey-like protein AYR69_12410 PF01435 Peptidase family M48 AYR69_12415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR69_12415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR69_12430 PF00156 Phosphoribosyl transferase domain AYR69_12435 PF02674 Colicin V production protein AYR69_12440 PF01180 Dihydroorotate dehydrogenase AYR69_12460 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYR69_12460 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYR69_12465 PF00881 Nitroreductase family AYR69_12475 PF00270 DEAD/DEAH box helicase AYR69_12475 PF00271 Helicase conserved C-terminal domain AYR69_12480 PF00313 'Cold-shock' DNA-binding domain AYR69_12490 PF04545 Sigma-70, region 4 AYR69_12490 PF04542 Sigma-70 region 2 AYR69_12490 PF00140 Sigma-70 factor, region 1.2 AYR69_12495 PF04241 Protein of unknown function (DUF423) AYR69_12505 PF05690 Thiazole biosynthesis protein ThiG AYR69_12515 PF03883 Peroxide stress protein YaaA AYR69_12525 PF12706 Beta-lactamase superfamily domain AYR69_12530 PF01546 Peptidase family M20/M25/M40 AYR69_12530 PF07687 Peptidase dimerisation domain AYR69_12540 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYR69_12545 PF00800 Prephenate dehydratase AYR69_12545 PF01817 Chorismate mutase type II AYR69_12545 PF01842 ACT domain AYR69_12550 PF00756 Putative esterase AYR69_12555 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_12555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_12555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_12560 PF00375 Sodium:dicarboxylate symporter family AYR69_12565 PF00591 Glycosyl transferase family, a/b domain AYR69_12565 PF02885 Glycosyl transferase family, helical bundle domain AYR69_12570 PF07023 Protein of unknown function (DUF1315) AYR69_12575 PF01513 ATP-NAD kinase AYR69_12580 PF00912 Transglycosylase AYR69_12580 PF14814 Bifunctional transglycosylase second domain AYR69_12580 PF00905 Penicillin binding protein transpeptidase domain AYR69_12590 PF00293 NUDIX domain AYR69_12600 PF00512 His Kinase A (phospho-acceptor) domain AYR69_12600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_12600 PF08521 Two-component sensor kinase N-terminal AYR69_12605 PF00486 Transcriptional regulatory protein, C terminal AYR69_12605 PF00072 Response regulator receiver domain AYR69_12615 PF00437 Type II/IV secretion system protein AYR69_12625 PF01980 tRNA-methyltransferase O AYR69_12625 PF18389 TrmO C-terminal domain AYR69_12630 PF00970 Oxidoreductase FAD-binding domain AYR69_12630 PF00175 Oxidoreductase NAD-binding domain AYR69_12635 PF02567 Phenazine biosynthesis-like protein AYR69_12640 PF00392 Bacterial regulatory proteins, gntR family AYR69_12640 PF00155 Aminotransferase class I and II AYR69_12650 PF00037 4Fe-4S binding domain AYR69_12655 PF00893 Small Multidrug Resistance protein AYR69_12660 PF00005 ABC transporter AYR69_12665 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_12670 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_12675 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR69_12680 PF03466 LysR substrate binding domain AYR69_12680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_12685 PF13533 Biotin-lipoyl like AYR69_12690 PF00873 AcrB/AcrD/AcrF family AYR69_12695 PF02321 Outer membrane efflux protein AYR69_12700 PF00464 Serine hydroxymethyltransferase AYR69_12755 PF00905 Penicillin binding protein transpeptidase domain AYR69_12780 PF00005 ABC transporter AYR69_12785 PF01061 ABC-2 type transporter AYR69_12790 PF14489 QueF-like protein AYR69_12790 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AYR69_12800 PF01098 Cell cycle protein AYR69_12805 PF13406 Transglycosylase SLT domain AYR69_12810 PF03330 Lytic transglycolase AYR69_12810 PF05036 Sporulation related domain AYR69_12830 PF12833 Helix-turn-helix domain AYR69_12840 PF00889 Elongation factor TS AYR69_12845 PF00318 Ribosomal protein S2 AYR69_12850 PF00557 Metallopeptidase family M24 AYR69_12860 PF07690 Major Facilitator Superfamily AYR69_12875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_12875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR69_12880 PF04055 Radical SAM superfamily AYR69_12885 PF09317 Domain of unknown function (DUF1974) AYR69_12885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_12885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_12900 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AYR69_12900 PF05221 S-adenosyl-L-homocysteine hydrolase AYR69_12905 PF02219 Methylenetetrahydrofolate reductase AYR69_12910 PF04452 RNA methyltransferase AYR69_12915 PF00990 Diguanylate cyclase, GGDEF domain AYR69_12915 PF03707 Bacterial signalling protein N terminal repeat AYR69_12915 PF00563 EAL domain AYR69_12920 PF00390 Malic enzyme, N-terminal domain AYR69_12920 PF03949 Malic enzyme, NAD binding domain AYR69_12920 PF01515 Phosphate acetyl/butaryl transferase AYR69_12925 PF01743 Poly A polymerase head domain AYR69_12925 PF12627 Probable RNA and SrmB- binding site of polymerase A AYR69_12930 PF13180 PDZ domain AYR69_12935 PF01784 NIF3 (NGG1p interacting factor 3) AYR69_12940 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYR69_12940 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYR69_12975 PF01040 UbiA prenyltransferase family AYR69_12980 PF04345 Chorismate lyase AYR69_12990 PF00854 POT family AYR69_13000 PF00117 Glutamine amidotransferase class-I AYR69_13005 PF01433 Peptidase family M1 domain AYR69_13005 PF11838 ERAP1-like C-terminal domain AYR69_13010 PF00593 TonB dependent receptor AYR69_13010 PF07715 TonB-dependent Receptor Plug Domain AYR69_13015 PF00591 Glycosyl transferase family, a/b domain AYR69_13015 PF02885 Glycosyl transferase family, helical bundle domain AYR69_13020 PF00218 Indole-3-glycerol phosphate synthase AYR69_13035 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYR69_13035 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYR69_13040 PF01799 [2Fe-2S] binding domain AYR69_13040 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR69_13060 PF00144 Beta-lactamase AYR69_13075 PF05675 Protein of unknown function (DUF817) AYR69_13080 PF01208 Uroporphyrinogen decarboxylase (URO-D) AYR69_13090 PF00425 chorismate binding enzyme AYR69_13100 PF00975 Thioesterase domain AYR69_13105 PF00664 ABC transporter transmembrane region AYR69_13105 PF00005 ABC transporter AYR69_13110 PF00664 ABC transporter transmembrane region AYR69_13110 PF00005 ABC transporter AYR69_13120 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYR69_13125 PF00550 Phosphopantetheine attachment site AYR69_13125 PF00857 Isochorismatase family AYR69_13130 PF13193 AMP-binding enzyme C-terminal domain AYR69_13130 PF00501 AMP-binding enzyme AYR69_13135 PF00668 Condensation domain AYR69_13135 PF00550 Phosphopantetheine attachment site AYR69_13135 PF00501 AMP-binding enzyme AYR69_13140 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYR69_13145 PF00593 TonB dependent receptor AYR69_13145 PF07715 TonB-dependent Receptor Plug Domain AYR69_13150 PF01497 Periplasmic binding protein AYR69_13155 PF00005 ABC transporter AYR69_13160 PF01032 FecCD transport family AYR69_13165 PF01032 FecCD transport family AYR69_13170 PF00550 Phosphopantetheine attachment site AYR69_13170 PF00501 AMP-binding enzyme AYR69_13170 PF13193 AMP-binding enzyme C-terminal domain AYR69_13170 PF00668 Condensation domain AYR69_13170 PF00975 Thioesterase domain AYR69_13175 PF00501 AMP-binding enzyme AYR69_13175 PF13193 AMP-binding enzyme C-terminal domain AYR69_13175 PF00668 Condensation domain AYR69_13175 PF00550 Phosphopantetheine attachment site AYR69_13185 PF13309 HTH domain AYR69_13185 PF08348 YheO-like PAS domain AYR69_13195 PF17954 Quercetinase C-terminal cupin domain AYR69_13195 PF02678 Pirin AYR69_13210 PF00440 Bacterial regulatory proteins, tetR family AYR69_13215 PF08990 Erythronolide synthase docking AYR69_13215 PF16197 Ketoacyl-synthetase C-terminal extension AYR69_13215 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR69_13215 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR69_13215 PF08659 KR domain AYR69_13215 PF00550 Phosphopantetheine attachment site AYR69_13215 PF09277 Erythronolide synthase, docking AYR69_13215 PF00698 Acyl transferase domain AYR69_13215 PF14765 Polyketide synthase dehydratase AYR69_13215 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_13220 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYR69_13220 PF13378 Enolase C-terminal domain-like AYR69_13225 PF00083 Sugar (and other) transporter AYR69_13230 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AYR69_13240 PF00892 EamA-like transporter family AYR69_13260 PF01266 FAD dependent oxidoreductase AYR69_13260 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYR69_13265 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_13265 PF18113 Rubredoxin binding C-terminal domain AYR69_13275 PF00355 Rieske [2Fe-2S] domain AYR69_13275 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR69_13280 PF02028 BCCT, betaine/carnitine/choline family transporter AYR69_13285 PF02028 BCCT, betaine/carnitine/choline family transporter AYR69_13290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_13290 PF03466 LysR substrate binding domain AYR69_13295 PF00324 Amino acid permease AYR69_13300 PF00171 Aldehyde dehydrogenase family AYR69_13315 PF06018 CodY GAF-like domain AYR69_13315 PF17853 GGDEF-like domain AYR69_13315 PF13556 PucR C-terminal helix-turn-helix domain AYR69_13345 PF04328 Selenoprotein, putative AYR69_13350 PF02554 Carbon starvation protein CstA AYR69_13350 PF13722 5TM C-terminal transporter carbon starvation CstA AYR69_13355 PF09285 Elongation factor P, C-terminal AYR69_13355 PF01132 Elongation factor P (EF-P) OB domain AYR69_13355 PF08207 Elongation factor P (EF-P) KOW-like domain AYR69_13360 PF04055 Radical SAM superfamily AYR69_13375 PF01197 Ribosomal protein L31 AYR69_13380 PF13593 SBF-like CPA transporter family (DUF4137) AYR69_13385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR69_13390 PF07690 Major Facilitator Superfamily AYR69_13395 PF13654 AAA domain AYR69_13395 PF05362 Lon protease (S16) C-terminal proteolytic domain AYR69_13400 PF03466 LysR substrate binding domain AYR69_13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_13405 PF01476 LysM domain AYR69_13405 PF01551 Peptidase family M23 AYR69_13410 PF01975 Survival protein SurE AYR69_13425 PF07943 Penicillin-binding protein 5, C-terminal domain AYR69_13425 PF00768 D-alanyl-D-alanine carboxypeptidase AYR69_13430 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_13435 PF00293 NUDIX domain AYR69_13435 PF13344 Haloacid dehalogenase-like hydrolase AYR69_13445 PF04356 Protein of unknown function (DUF489) AYR69_13450 PF00206 Lyase AYR69_13450 PF08328 Adenylosuccinate lyase C-terminal AYR69_13465 PF08496 Peptidase family S49 N-terminal AYR69_13465 PF01343 Peptidase family S49 AYR69_13470 PF00005 ABC transporter AYR69_13475 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_13480 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_13485 PF12849 PBP superfamily domain AYR69_13490 PF00324 Amino acid permease AYR69_13495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYR69_13495 PF00205 Thiamine pyrophosphate enzyme, central domain AYR69_13495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYR69_13500 PF01037 Lrp/AsnC ligand binding domain AYR69_13505 PF00171 Aldehyde dehydrogenase family AYR69_13510 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYR69_13515 PF00202 Aminotransferase class-III AYR69_13525 PF17754 MftR C-terminal domain AYR69_13525 PF00440 Bacterial regulatory proteins, tetR family AYR69_13535 PF00487 Fatty acid desaturase AYR69_13540 PF00175 Oxidoreductase NAD-binding domain AYR69_13540 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR69_13540 PF00970 Oxidoreductase FAD-binding domain AYR69_13545 PF00440 Bacterial regulatory proteins, tetR family AYR69_13555 PF18339 RapA N-terminal Tudor like domain 1 AYR69_13555 PF00271 Helicase conserved C-terminal domain AYR69_13555 PF12137 RNA polymerase recycling family C-terminal AYR69_13555 PF00176 SNF2 family N-terminal domain AYR69_13555 PF18337 RapA N-terminal Tudor like domain AYR69_13560 PF00849 RNA pseudouridylate synthase AYR69_13570 PF00202 Aminotransferase class-III AYR69_13575 PF02581 Thiamine monophosphate synthase AYR69_13600 PF05193 Peptidase M16 inactive domain AYR69_13600 PF00675 Insulinase (Peptidase family M16) AYR69_13605 PF02567 Phenazine biosynthesis-like protein AYR69_13615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_13615 PF03466 LysR substrate binding domain AYR69_13620 PF06779 Uncharacterised MFS-type transporter YbfB AYR69_13635 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR69_13640 PF00849 RNA pseudouridylate synthase AYR69_13645 PF03971 Monomeric isocitrate dehydrogenase AYR69_13655 PF00768 D-alanyl-D-alanine carboxypeptidase AYR69_13655 PF07943 Penicillin-binding protein 5, C-terminal domain AYR69_13660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_13665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR69_13670 PF00875 DNA photolyase AYR69_13670 PF03441 FAD binding domain of DNA photolyase AYR69_13700 PF02350 UDP-N-acetylglucosamine 2-epimerase AYR69_13715 PF03060 Nitronate monooxygenase AYR69_13720 PF01207 Dihydrouridine synthase (Dus) AYR69_13725 PF07759 Protein of unknown function (DUF1615) AYR69_13735 PF00696 Amino acid kinase family AYR69_13735 PF01472 PUA domain AYR69_13740 PF01018 GTP1/OBG AYR69_13740 PF01926 50S ribosome-binding GTPase AYR69_13755 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYR69_13755 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYR69_13760 PF00892 EamA-like transporter family AYR69_13770 PF04851 Type III restriction enzyme, res subunit AYR69_13770 PF00271 Helicase conserved C-terminal domain AYR69_13770 PF17757 UvrB interaction domain AYR69_13770 PF12344 Ultra-violet resistance protein B AYR69_13770 PF02151 UvrB/uvrC motif AYR69_13780 PF17151 Periplasmic sensor domain AYR69_13780 PF00990 Diguanylate cyclase, GGDEF domain AYR69_13815 PF00106 short chain dehydrogenase AYR69_13820 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AYR69_13825 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AYR69_13830 PF02565 Recombination protein O C terminal AYR69_13830 PF11967 Recombination protein O N terminal AYR69_13840 PF07650 KH domain AYR69_13840 PF01926 50S ribosome-binding GTPase AYR69_13845 PF14622 Ribonuclease-III-like AYR69_13845 PF00035 Double-stranded RNA binding motif AYR69_13855 PF10502 Signal peptidase, peptidase S26 AYR69_13860 PF00009 Elongation factor Tu GTP binding domain AYR69_13860 PF03144 Elongation factor Tu domain 2 AYR69_13860 PF06421 GTP-binding protein LepA C-terminus AYR69_13860 PF00679 Elongation factor G C-terminus AYR69_13870 PF13180 PDZ domain AYR69_13875 PF00890 FAD binding domain AYR69_13875 PF02910 Fumarate reductase flavoprotein C-term AYR69_13885 PF02223 Thymidylate kinase AYR69_13890 PF02618 YceG-like family AYR69_13895 PF01063 Amino-transferase class IV AYR69_13910 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_13915 PF00528 Binding-protein-dependent transport system inner membrane component AYR69_13920 PF12857 TOBE-like domain AYR69_13920 PF00005 ABC transporter AYR69_13925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_13925 PF03466 LysR substrate binding domain AYR69_13935 PF14602 Hexapeptide repeat of succinyl-transferase AYR69_13935 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_13935 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AYR69_13945 PF06508 Queuosine biosynthesis protein QueC AYR69_13960 PF00578 AhpC/TSA family AYR69_13970 PF00293 NUDIX domain AYR69_13970 PF01467 Cytidylyltransferase-like AYR69_13975 PF00378 Enoyl-CoA hydratase/isomerase AYR69_13980 PF01784 NIF3 (NGG1p interacting factor 3) AYR69_13990 PF07690 Major Facilitator Superfamily AYR69_13995 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AYR69_13995 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AYR69_13995 PF02769 AIR synthase related protein, C-terminal domain AYR69_14000 PF01966 HD domain AYR69_14005 PF01330 RuvA N terminal domain AYR69_14005 PF07499 RuvA, C-terminal domain AYR69_14010 PF17864 RuvB AAA lid domain AYR69_14010 PF05496 Holliday junction DNA helicase RuvB P-loop domain AYR69_14010 PF05491 RuvB C-terminal winged helix domain AYR69_14015 PF01546 Peptidase family M20/M25/M40 AYR69_14015 PF07687 Peptidase dimerisation domain AYR69_14020 PF03061 Thioesterase superfamily AYR69_14025 PF01618 MotA/TolQ/ExbB proton channel family AYR69_14030 PF02472 Biopolymer transport protein ExbD/TolR AYR69_14040 PF07676 WD40-like Beta Propeller Repeat AYR69_14040 PF04052 TolB amino-terminal domain AYR69_14045 PF00691 OmpA family AYR69_14055 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AYR69_14060 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYR69_14060 PF00588 SpoU rRNA Methylase family AYR69_14100 PF11638 DnaA N-terminal domain AYR69_14100 PF08299 Bacterial dnaA protein helix-turn-helix AYR69_14100 PF00308 Bacterial dnaA protein AYR69_14105 PF01594 AI-2E family transporter AYR69_14110 PF00586 AIR synthase related protein, N-terminal domain AYR69_14110 PF02769 AIR synthase related protein, C-terminal domain AYR69_14115 PF00551 Formyl transferase AYR69_14120 PF12697 Alpha/beta hydrolase family AYR69_14125 PF01343 Peptidase family S49 AYR69_14125 PF06965 Na+/H+ antiporter 1 AYR69_14135 PF00753 Metallo-beta-lactamase superfamily AYR69_14135 PF13567 Domain of unknown function (DUF4131) AYR69_14135 PF03772 Competence protein AYR69_14140 PF00005 ABC transporter AYR69_14145 PF02687 FtsX-like permease family AYR69_14145 PF12704 MacB-like periplasmic core domain AYR69_14155 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AYR69_14165 PF00266 Aminotransferase class-V AYR69_14175 PF13533 Biotin-lipoyl like AYR69_14195 PF00535 Glycosyl transferase family 2 AYR69_14210 PF03989 DNA gyrase C-terminal domain, beta-propeller AYR69_14210 PF00521 DNA gyrase/topoisomerase IV, subunit A AYR69_14215 PF00766 Electron transfer flavoprotein FAD-binding domain AYR69_14215 PF01012 Electron transfer flavoprotein domain AYR69_14220 PF01012 Electron transfer flavoprotein domain AYR69_14225 PF00589 Phage integrase family AYR69_14225 PF02899 Phage integrase, N-terminal SAM-like domain AYR69_14230 PF01810 LysE type translocator AYR69_14235 PF01678 Diaminopimelate epimerase AYR69_14240 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYR69_14240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYR69_14250 PF00324 Amino acid permease AYR69_14255 PF18073 Rubredoxin metal binding domain AYR69_14265 PF00152 tRNA synthetases class II (D, K and N) AYR69_14270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR69_14270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR69_14270 PF11890 Domain of unknown function (DUF3410) AYR69_14275 PF06803 Protein of unknown function (DUF1232) AYR69_14280 PF02634 FdhD/NarQ family AYR69_14285 PF00384 Molybdopterin oxidoreductase AYR69_14290 PF02595 Glycerate kinase family AYR69_14305 PF00881 Nitroreductase family AYR69_14330 PF13737 Transposase DDE domain AYR69_14340 PF00975 Thioesterase domain AYR69_14340 PF13193 AMP-binding enzyme C-terminal domain AYR69_14340 PF00501 AMP-binding enzyme AYR69_14340 PF00668 Condensation domain AYR69_14340 PF00550 Phosphopantetheine attachment site AYR69_14355 PF01272 Transcription elongation factor, GreA/GreB, C-term AYR69_14355 PF03449 Transcription elongation factor, N-terminal AYR69_14360 PF01464 Transglycosylase SLT domain AYR69_14360 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR69_14370 PF01171 PP-loop family AYR69_14375 PF01464 Transglycosylase SLT domain AYR69_14380 PF01435 Peptidase family M48 AYR69_14390 PF00873 AcrB/AcrD/AcrF family AYR69_14395 PF03009 Glycerophosphoryl diester phosphodiesterase family AYR69_14400 PF00753 Metallo-beta-lactamase superfamily AYR69_14405 PF01219 Prokaryotic diacylglycerol kinase AYR69_14410 PF00118 TCP-1/cpn60 chaperonin family AYR69_14415 PF00166 Chaperonin 10 Kd subunit AYR69_14420 PF00149 Calcineurin-like phosphoesterase AYR69_14425 PF00781 Diacylglycerol kinase catalytic domain AYR69_14430 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AYR69_14430 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AYR69_14435 PF01266 FAD dependent oxidoreductase AYR69_14435 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AYR69_14440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYR69_14440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYR69_14445 PF00083 Sugar (and other) transporter AYR69_14460 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYR69_14460 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYR69_14475 PF09423 PhoD-like phosphatase AYR69_14475 PF16655 PhoD-like phosphatase, N-terminal domain AYR69_14495 PF00809 Pterin binding enzyme AYR69_14500 PF17862 AAA+ lid domain AYR69_14500 PF06480 FtsH Extracellular AYR69_14500 PF00004 ATPase family associated with various cellular activities (AAA) AYR69_14500 PF01434 Peptidase family M41 AYR69_14505 PF01728 FtsJ-like methyltransferase AYR69_14510 PF01985 CRS1 / YhbY (CRM) domain AYR69_14525 PF00117 Glutamine amidotransferase class-I AYR69_14525 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AYR69_14530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR69_14530 PF02142 MGS-like domain AYR69_14530 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYR69_14535 PF01272 Transcription elongation factor, GreA/GreB, C-term AYR69_14535 PF03449 Transcription elongation factor, N-terminal AYR69_14540 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_14545 PF00582 Universal stress protein family AYR69_14550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR69_14560 PF09587 Bacterial capsule synthesis protein PGA_cap AYR69_14570 PF01527 Transposase AYR69_14575 PF13276 HTH-like domain AYR69_14575 PF00665 Integrase core domain AYR69_14575 PF13333 Integrase core domain AYR69_14590 PF00999 Sodium/hydrogen exchanger family AYR69_14595 PF04228 Putative neutral zinc metallopeptidase AYR69_14600 PF05661 Protein of unknown function (DUF808) AYR69_14605 PF00579 tRNA synthetases class I (W and Y) AYR69_14610 PF00549 CoA-ligase AYR69_14610 PF02629 CoA binding domain AYR69_14615 PF08442 ATP-grasp domain AYR69_14615 PF00549 CoA-ligase AYR69_14620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_14620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR69_14625 PF00364 Biotin-requiring enzyme AYR69_14625 PF02817 e3 binding domain AYR69_14625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR69_14630 PF16078 2-oxoglutarate dehydrogenase N-terminus AYR69_14630 PF02779 Transketolase, pyrimidine binding domain AYR69_14630 PF00676 Dehydrogenase E1 component AYR69_14630 PF16870 2-oxoglutarate dehydrogenase C-terminal AYR69_14635 PF13085 2Fe-2S iron-sulfur cluster binding domain AYR69_14640 PF00890 FAD binding domain AYR69_14640 PF02910 Fumarate reductase flavoprotein C-term AYR69_14645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYR69_14650 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYR69_14655 PF00285 Citrate synthase, C-terminal domain AYR69_14680 PF03979 Sigma-70 factor, region 1.1 AYR69_14680 PF04545 Sigma-70, region 4 AYR69_14680 PF04539 Sigma-70 region 3 AYR69_14680 PF04542 Sigma-70 region 2 AYR69_14680 PF00140 Sigma-70 factor, region 1.2 AYR69_14680 PF04546 Sigma-70, non-essential region AYR69_14685 PF04359 Protein of unknown function (DUF493) AYR69_14690 PF03099 Biotin/lipoate A/B protein ligase family AYR69_14700 PF00465 Iron-containing alcohol dehydrogenase AYR69_14705 PF13520 Amino acid permease AYR69_14710 PF03358 NADPH-dependent FMN reductase AYR69_14715 PF01638 HxlR-like helix-turn-helix AYR69_14720 PF00588 SpoU rRNA Methylase family AYR69_14725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYR69_14725 PF10414 Sirohaem synthase dimerisation region AYR69_14725 PF14824 Sirohaem biosynthesis protein central AYR69_14730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR69_14730 PF02403 Seryl-tRNA synthetase N-terminal domain AYR69_14740 PF03548 Outer membrane lipoprotein carrier protein LolA AYR69_14745 PF01016 Ribosomal L27 protein AYR69_14750 PF00829 Ribosomal prokaryotic L21 protein AYR69_14760 PF00348 Polyprenyl synthetase AYR69_14770 PF01569 PAP2 superfamily AYR69_14775 PF00529 HlyD membrane-fusion protein of T1SS AYR69_14775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR69_14780 PF00873 AcrB/AcrD/AcrF family AYR69_14785 PF02321 Outer membrane efflux protein AYR69_14790 PF01906 Putative heavy-metal-binding AYR69_14795 PF01906 Putative heavy-metal-binding AYR69_14815 PF08264 Anticodon-binding domain of tRNA AYR69_14815 PF00133 tRNA synthetases class I (I, L, M and V) AYR69_14815 PF10458 Valyl tRNA synthetase tRNA binding arm AYR69_14835 PF03466 LysR substrate binding domain AYR69_14835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_14840 PF00909 Ammonium Transporter Family AYR69_14850 PF00512 His Kinase A (phospho-acceptor) domain AYR69_14850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_14850 PF08521 Two-component sensor kinase N-terminal AYR69_14855 PF00486 Transcriptional regulatory protein, C terminal AYR69_14855 PF00072 Response regulator receiver domain AYR69_14860 PF00884 Sulfatase AYR69_14860 PF08019 Phosphoethanolamine transferase EptA/EptB AYR69_14880 PF01734 Patatin-like phospholipase AYR69_14890 PF01145 SPFH domain / Band 7 family AYR69_14895 PF04237 YjbR AYR69_14900 PF00348 Polyprenyl synthetase AYR69_14905 PF04303 PrpF protein AYR69_14910 PF00324 Amino acid permease AYR69_14920 PF01965 DJ-1/PfpI family AYR69_14925 PF08659 KR domain AYR69_14925 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR69_14925 PF00550 Phosphopantetheine attachment site AYR69_14925 PF14765 Polyketide synthase dehydratase AYR69_14925 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR69_14925 PF16197 Ketoacyl-synthetase C-terminal extension AYR69_14925 PF00698 Acyl transferase domain AYR69_14925 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_14925 PF09277 Erythronolide synthase, docking AYR69_14925 PF08990 Erythronolide synthase docking AYR69_14930 PF06719 AraC-type transcriptional regulator N-terminus AYR69_14930 PF12833 Helix-turn-helix domain AYR69_14935 PF02673 Bacitracin resistance protein BacA AYR69_14955 PF02525 Flavodoxin-like fold AYR69_14970 PF01507 Phosphoadenosine phosphosulfate reductase family AYR69_14975 PF06974 Protein of unknown function (DUF1298) AYR69_14975 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AYR69_14985 PF00575 S1 RNA binding domain AYR69_14985 PF10150 Ribonuclease E/G family AYR69_14990 PF02545 Maf-like protein AYR69_14995 PF04093 rod shape-determining protein MreD AYR69_15000 PF04085 rod shape-determining protein MreC AYR69_15010 PF02686 Glu-tRNAGln amidotransferase C subunit AYR69_15015 PF01425 Amidase AYR69_15020 PF02934 GatB/GatE catalytic domain AYR69_15020 PF02637 GatB domain AYR69_15045 PF05649 Peptidase family M13 AYR69_15045 PF01431 Peptidase family M13 AYR69_15050 PF05992 SbmA/BacA-like family AYR69_15055 PF13291 ACT domain AYR69_15055 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_15060 PF01734 Patatin-like phospholipase AYR69_15065 PF01235 Sodium:alanine symporter family AYR69_15075 PF00881 Nitroreductase family AYR69_15080 PF07690 Major Facilitator Superfamily AYR69_15085 PF12805 FUSC-like inner membrane protein yccS AYR69_15095 PF00667 FAD binding domain AYR69_15095 PF00258 Flavodoxin AYR69_15095 PF00175 Oxidoreductase NAD-binding domain AYR69_15135 PF17969 L,D-transpeptidase C-terminal domain AYR69_15135 PF03734 L,D-transpeptidase catalytic domain AYR69_15140 PF04304 Protein of unknown function (DUF454) AYR69_15150 PF08085 Entericidin EcnA/B family AYR69_15155 PF01546 Peptidase family M20/M25/M40 AYR69_15155 PF07687 Peptidase dimerisation domain AYR69_15165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_15165 PF00072 Response regulator receiver domain AYR69_15165 PF01627 Hpt domain AYR69_15165 PF01584 CheW-like domain AYR69_15170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYR69_15170 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AYR69_15175 PF01584 CheW-like domain AYR69_15180 PF00072 Response regulator receiver domain AYR69_15185 PF00072 Response regulator receiver domain AYR69_15200 PF00873 AcrB/AcrD/AcrF family AYR69_15205 PF03129 Anticodon binding domain AYR69_15205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR69_15205 PF04073 Aminoacyl-tRNA editing domain AYR69_15215 PF03831 PhnA domain AYR69_15215 PF08274 PhnA Zinc-Ribbon AYR69_15220 PF04343 Protein of unknown function, DUF488 AYR69_15230 PF01571 Aminomethyltransferase folate-binding domain AYR69_15235 PF10411 Disulfide bond isomerase protein N-terminus AYR69_15235 PF13098 Thioredoxin-like domain AYR69_15250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR69_15260 PF02245 Methylpurine-DNA glycosylase (MPG) AYR69_15265 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYR69_15265 PF06827 Zinc finger found in FPG and IleRS AYR69_15265 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYR69_15280 PF01741 Large-conductance mechanosensitive channel, MscL AYR69_15290 PF00860 Permease family AYR69_15295 PF08468 Methyltransferase small domain N-terminal AYR69_15295 PF05175 Methyltransferase small domain AYR69_15300 PF00324 Amino acid permease AYR69_15305 PF01139 tRNA-splicing ligase RtcB AYR69_15315 PF13505 Outer membrane protein beta-barrel domain AYR69_15315 PF00691 OmpA family AYR69_15325 PF00108 Thiolase, N-terminal domain AYR69_15325 PF02803 Thiolase, C-terminal domain AYR69_15335 PF00893 Small Multidrug Resistance protein AYR69_15345 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYR69_15345 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYR69_15350 PF01011 PQQ enzyme repeat AYR69_15355 PF04966 Carbohydrate-selective porin, OprB family AYR69_15360 PF02515 CoA-transferase family III AYR69_15365 PF12833 Helix-turn-helix domain AYR69_15365 PF02311 AraC-like ligand binding domain AYR69_15370 PF02803 Thiolase, C-terminal domain AYR69_15370 PF00108 Thiolase, N-terminal domain AYR69_15375 PF00378 Enoyl-CoA hydratase/isomerase AYR69_15375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR69_15375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR69_15400 PF03006 Haemolysin-III related AYR69_15405 PF07690 Major Facilitator Superfamily AYR69_15405 PF00083 Sugar (and other) transporter AYR69_15415 PF01043 SecA preprotein cross-linking domain AYR69_15415 PF07517 SecA DEAD-like domain AYR69_15415 PF02810 SEC-C motif AYR69_15415 PF07516 SecA Wing and Scaffold domain AYR69_15420 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYR69_15420 PF00578 AhpC/TSA family AYR69_15425 PF00753 Metallo-beta-lactamase superfamily AYR69_15440 PF08245 Mur ligase middle domain AYR69_15440 PF02875 Mur ligase family, glutamate ligase domain AYR69_15445 PF01039 Carboxyl transferase domain AYR69_15450 PF00290 Tryptophan synthase alpha chain AYR69_15475 PF00291 Pyridoxal-phosphate dependent enzyme AYR69_15480 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AYR69_15485 PF07715 TonB-dependent Receptor Plug Domain AYR69_15485 PF00593 TonB dependent receptor AYR69_15490 PF01923 Cobalamin adenosyltransferase AYR69_15510 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AYR69_15515 PF00072 Response regulator receiver domain AYR69_15515 PF00486 Transcriptional regulatory protein, C terminal AYR69_15520 PF00512 His Kinase A (phospho-acceptor) domain AYR69_15520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_15520 PF00672 HAMP domain AYR69_15530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_15530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_15530 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_15530 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYR69_15535 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYR69_15535 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_15535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_15535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_15540 PF06146 Phosphate-starvation-inducible E AYR69_15560 PF00593 TonB dependent receptor AYR69_15560 PF07715 TonB-dependent Receptor Plug Domain AYR69_15570 PF00152 tRNA synthetases class II (D, K and N) AYR69_15570 PF01336 OB-fold nucleic acid binding domain AYR69_15570 PF02938 GAD domain AYR69_15585 PF01501 Glycosyl transferase family 8 AYR69_15585 PF08437 Glycosyl transferase family 8 C-terminal AYR69_15590 PF09612 Bacterial protein of unknown function (HtrL_YibB) AYR69_15600 PF13439 Glycosyltransferase Family 4 AYR69_15600 PF00534 Glycosyl transferases group 1 AYR69_15610 PF13439 Glycosyltransferase Family 4 AYR69_15610 PF00534 Glycosyl transferases group 1 AYR69_15615 PF01522 Polysaccharide deacetylase AYR69_15625 PF01063 Amino-transferase class IV AYR69_15630 PF08335 GlnD PII-uridylyltransferase AYR69_15630 PF03710 Glutamate-ammonia ligase adenylyltransferase AYR69_15635 PF00512 His Kinase A (phospho-acceptor) domain AYR69_15635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_15635 PF07689 KaiB domain AYR69_15645 PF02547 Queuosine biosynthesis protein AYR69_15660 PF01702 Queuine tRNA-ribosyltransferase AYR69_15665 PF02699 Preprotein translocase subunit AYR69_15670 PF07549 SecD/SecF GG Motif AYR69_15670 PF02355 Protein export membrane protein AYR69_15670 PF13721 SecD export protein N-terminal TM region AYR69_15675 PF07549 SecD/SecF GG Motif AYR69_15675 PF02355 Protein export membrane protein AYR69_15680 PF04127 DNA / pantothenate metabolism flavoprotein AYR69_15680 PF02441 Flavoprotein AYR69_15685 PF04002 RadC-like JAB domain AYR69_15690 PF01062 Bestrophin, RFP-TM, chloride channel AYR69_15695 PF02811 PHP domain AYR69_15700 PF04279 Intracellular septation protein A AYR69_15705 PF03795 YCII-related domain AYR69_15715 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYR69_15715 PF01266 FAD dependent oxidoreductase AYR69_15725 PF04461 Protein of unknown function (DUF520) AYR69_15735 PF03061 Thioesterase superfamily AYR69_15740 PF00085 Thioredoxin AYR69_15745 PF00561 alpha/beta hydrolase fold AYR69_15750 PF04273 Putative phosphatase (DUF442) AYR69_15750 PF00753 Metallo-beta-lactamase superfamily AYR69_15755 PF01527 Transposase AYR69_15760 PF13276 HTH-like domain AYR69_15760 PF13333 Integrase core domain AYR69_15760 PF00665 Integrase core domain AYR69_15770 PF01527 Transposase AYR69_15775 PF00665 Integrase core domain AYR69_15775 PF13276 HTH-like domain AYR69_15775 PF13333 Integrase core domain AYR69_15780 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_15780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR69_15815 PF17152 Periplasmic sensor domain AYR69_15815 PF00990 Diguanylate cyclase, GGDEF domain AYR69_15820 PF00691 OmpA family AYR69_15820 PF01389 OmpA-like transmembrane domain AYR69_15825 PF00149 Calcineurin-like phosphoesterase AYR69_15825 PF10518 TAT (twin-arginine translocation) pathway signal sequence AYR69_15830 PF13091 PLD-like domain AYR69_15840 PF16360 GTP-binding GTPase Middle Region AYR69_15840 PF01926 50S ribosome-binding GTPase AYR69_15840 PF13167 GTP-binding GTPase N-terminal AYR69_15860 PF00149 Calcineurin-like phosphoesterase AYR69_15865 PF00398 Ribosomal RNA adenine dimethylase AYR69_15870 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYR69_15875 PF00572 Ribosomal protein L13 AYR69_15880 PF00380 Ribosomal protein S9/S16 AYR69_15885 PF00043 Glutathione S-transferase, C-terminal domain AYR69_15885 PF13417 Glutathione S-transferase, N-terminal domain AYR69_15890 PF04386 Stringent starvation protein B AYR69_15900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR69_15900 PF02785 Biotin carboxylase C-terminal domain AYR69_15900 PF00289 Biotin carboxylase, N-terminal domain AYR69_15900 PF00364 Biotin-requiring enzyme AYR69_15910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_15910 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_15910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_15915 PF01039 Carboxyl transferase domain AYR69_15930 PF17932 Tetracyclin repressor-like, C-terminal domain AYR69_15930 PF00440 Bacterial regulatory proteins, tetR family AYR69_15935 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_15935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_15935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_15980 PF01066 CDP-alcohol phosphatidyltransferase AYR69_15985 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AYR69_16005 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AYR69_16005 PF00056 lactate/malate dehydrogenase, NAD binding domain AYR69_16015 PF01464 Transglycosylase SLT domain AYR69_16015 PF01551 Peptidase family M23 AYR69_16015 PF10145 Phage-related minor tail protein AYR69_16020 PF01938 TRAM domain AYR69_16020 PF00919 Uncharacterized protein family UPF0004 AYR69_16020 PF04055 Radical SAM superfamily AYR69_16025 PF02562 PhoH-like protein AYR69_16030 PF02130 Uncharacterized protein family UPF0054 AYR69_16055 PF03358 NADPH-dependent FMN reductase AYR69_16060 PF03631 Virulence factor BrkB AYR69_16065 PF00892 EamA-like transporter family AYR69_16070 PF12833 Helix-turn-helix domain AYR69_16075 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYR69_16120 PF08206 Ribonuclease B OB domain AYR69_16120 PF00773 RNB domain AYR69_16120 PF17876 Cold shock domain AYR69_16120 PF08461 Ribonuclease R winged-helix domain AYR69_16120 PF00575 S1 RNA binding domain AYR69_16125 PF01432 Peptidase family M3 AYR69_16130 PF09526 Probable metal-binding protein (DUF2387) AYR69_16160 PF03937 Flavinator of succinate dehydrogenase AYR69_16165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_16165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_16165 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_16170 PF00743 Flavin-binding monooxygenase-like AYR69_16175 PF01196 Ribosomal protein L17 AYR69_16180 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYR69_16180 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYR69_16180 PF01000 RNA polymerase Rpb3/RpoA insert domain AYR69_16185 PF00163 Ribosomal protein S4/S9 N-terminal domain AYR69_16185 PF01479 S4 domain AYR69_16190 PF00411 Ribosomal protein S11 AYR69_16195 PF00416 Ribosomal protein S13/S18 AYR69_16200 PF00444 Ribosomal protein L36 AYR69_16205 PF00344 SecY translocase AYR69_16210 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AYR69_16215 PF00327 Ribosomal protein L30p/L7e AYR69_16220 PF00333 Ribosomal protein S5, N-terminal domain AYR69_16220 PF03719 Ribosomal protein S5, C-terminal domain AYR69_16225 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AYR69_16230 PF00347 Ribosomal protein L6 AYR69_16235 PF00410 Ribosomal protein S8 AYR69_16240 PF00253 Ribosomal protein S14p/S29e AYR69_16245 PF00281 Ribosomal protein L5 AYR69_16245 PF00673 ribosomal L5P family C-terminus AYR69_16250 PF00467 KOW motif AYR69_16250 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AYR69_16255 PF00238 Ribosomal protein L14p/L23e AYR69_16260 PF00366 Ribosomal protein S17 AYR69_16265 PF00831 Ribosomal L29 protein AYR69_16270 PF00252 Ribosomal protein L16p/L10e AYR69_16275 PF07650 KH domain AYR69_16275 PF00189 Ribosomal protein S3, C-terminal domain AYR69_16280 PF00237 Ribosomal protein L22p/L17e AYR69_16285 PF00203 Ribosomal protein S19 AYR69_16290 PF03947 Ribosomal Proteins L2, C-terminal domain AYR69_16290 PF00181 Ribosomal Proteins L2, RNA binding domain AYR69_16295 PF00276 Ribosomal protein L23 AYR69_16300 PF00573 Ribosomal protein L4/L1 family AYR69_16305 PF00297 Ribosomal protein L3 AYR69_16310 PF00338 Ribosomal protein S10p/S20e AYR69_16315 PF00117 Glutamine amidotransferase class-I AYR69_16320 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR69_16325 PF05872 Bacterial protein of unknown function (DUF853) AYR69_16330 PF00970 Oxidoreductase FAD-binding domain AYR69_16330 PF00042 Globin AYR69_16330 PF00175 Oxidoreductase NAD-binding domain AYR69_16335 PF02082 Transcriptional regulator AYR69_16340 PF01926 50S ribosome-binding GTPase AYR69_16350 PF00375 Sodium:dicarboxylate symporter family AYR69_16360 PF01553 Acyltransferase AYR69_16375 PF00270 DEAD/DEAH box helicase AYR69_16375 PF17191 RecG wedge domain AYR69_16375 PF00271 Helicase conserved C-terminal domain AYR69_16380 PF00156 Phosphoribosyl transferase domain AYR69_16385 PF00293 NUDIX domain AYR69_16390 PF03641 Possible lysine decarboxylase AYR69_16395 PF01544 CorA-like Mg2+ transporter protein AYR69_16405 PF05494 MlaC protein AYR69_16415 PF02405 Permease MlaE AYR69_16420 PF00005 ABC transporter AYR69_16430 PF00271 Helicase conserved C-terminal domain AYR69_16430 PF12343 Cold shock protein DEAD box A AYR69_16430 PF00270 DEAD/DEAH box helicase AYR69_16430 PF03880 DbpA RNA binding domain AYR69_16435 PF00459 Inositol monophosphatase family AYR69_16440 PF02779 Transketolase, pyrimidine binding domain AYR69_16440 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AYR69_16440 PF02780 Transketolase, C-terminal domain AYR69_16445 PF00925 GTP cyclohydrolase II AYR69_16450 PF01218 Coproporphyrinogen III oxidase AYR69_16455 PF01488 Shikimate / quinate 5-dehydrogenase AYR69_16455 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYR69_16455 PF08501 Shikimate dehydrogenase substrate binding domain AYR69_16465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR69_16465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR69_16465 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYR69_16465 PF02770 Acyl-CoA dehydrogenase, middle domain AYR69_16475 PF04024 PspC domain AYR69_16480 PF00571 CBS domain AYR69_16505 PF02091 Glycyl-tRNA synthetase alpha subunit AYR69_16510 PF02092 Glycyl-tRNA synthetase beta subunit AYR69_16510 PF05746 DALR anticodon binding domain AYR69_16515 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system AYR69_16530 PF00892 EamA-like transporter family AYR69_16535 PF03466 LysR substrate binding domain AYR69_16535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_16565 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AYR69_16570 PF04996 Succinylarginine dihydrolase AYR69_16575 PF00171 Aldehyde dehydrogenase family AYR69_16580 PF04958 Arginine N-succinyltransferase beta subunit AYR69_16585 PF00202 Aminotransferase class-III AYR69_16590 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYR69_16590 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYR69_16595 PF00324 Amino acid permease AYR69_16605 PF08241 Methyltransferase domain AYR69_16625 PF13614 AAA domain AYR69_16630 PF01594 AI-2E family transporter AYR69_16635 PF00080 Copper/zinc superoxide dismutase (SODC) AYR69_16640 PF12805 FUSC-like inner membrane protein yccS AYR69_16645 PF07690 Major Facilitator Superfamily AYR69_16655 PF02525 Flavodoxin-like fold AYR69_16660 PF03992 Antibiotic biosynthesis monooxygenase AYR69_16670 PF02913 FAD linked oxidases, C-terminal domain AYR69_16670 PF01565 FAD binding domain AYR69_16675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR69_16675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR69_16680 PF00892 EamA-like transporter family AYR69_16685 PF00892 EamA-like transporter family AYR69_16695 PF01925 Sulfite exporter TauE/SafE AYR69_16700 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYR69_16700 PF16198 tRNA pseudouridylate synthase B C-terminal domain AYR69_16700 PF09157 Pseudouridine synthase II TruB, C-terminal AYR69_16705 PF03280 Proteobacterial lipase chaperone protein AYR69_16710 PF00561 alpha/beta hydrolase fold AYR69_16715 PF01527 Transposase AYR69_16720 PF13333 Integrase core domain AYR69_16720 PF00665 Integrase core domain AYR69_16720 PF13276 HTH-like domain AYR69_16725 PF01245 Ribosomal protein L19 AYR69_16730 PF01746 tRNA (Guanine-1)-methyltransferase AYR69_16735 PF05239 PRC-barrel domain AYR69_16735 PF01782 RimM N-terminal domain AYR69_16740 PF00886 Ribosomal protein S16 AYR69_16780 PF02401 LytB protein AYR69_16785 PF00625 Guanylate kinase AYR69_16790 PF01192 RNA polymerase Rpb6 AYR69_16795 PF04607 Region found in RelA / SpoT proteins AYR69_16795 PF02824 TGS domain AYR69_16795 PF13291 ACT domain AYR69_16800 PF01042 Endoribonuclease L-PSP AYR69_16805 PF04324 BFD-like [2Fe-2S] binding domain AYR69_16810 PF00210 Ferritin-like domain AYR69_16815 PF11846 Virulence factor membrane-bound polymerase, C-terminal AYR69_16815 PF04932 O-Antigen ligase AYR69_16815 PF15864 Protein glycosylation ligase AYR69_16825 PF07963 Prokaryotic N-terminal methylation motif AYR69_16825 PF00114 Pilin (bacterial filament) AYR69_16835 PF04536 TPM domain AYR69_16840 PF04011 LemA family AYR69_16850 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR69_16850 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AYR69_16855 PF01645 Conserved region in glutamate synthase AYR69_16855 PF01493 GXGXG motif AYR69_16855 PF00310 Glutamine amidotransferases class-II AYR69_16855 PF04898 Glutamate synthase central domain AYR69_16865 PF01761 3-dehydroquinate synthase AYR69_16870 PF01202 Shikimate kinase AYR69_16875 PF00263 Bacterial type II and III secretion system protein AYR69_16875 PF03958 Bacterial type II/III secretion system short domain AYR69_16875 PF11741 AMIN domain AYR69_16875 PF07660 Secretin and TonB N terminus short domain AYR69_16900 PF00912 Transglycosylase AYR69_16900 PF00905 Penicillin binding protein transpeptidase domain AYR69_16900 PF17092 Penicillin-binding protein OB-like domain AYR69_16905 PF13847 Methyltransferase domain AYR69_16915 PF00953 Glycosyl transferase family 4 AYR69_16920 PF08245 Mur ligase middle domain AYR69_16920 PF02875 Mur ligase family, glutamate ligase domain AYR69_16920 PF01225 Mur ligase family, catalytic domain AYR69_16925 PF01225 Mur ligase family, catalytic domain AYR69_16925 PF02875 Mur ligase family, glutamate ligase domain AYR69_16925 PF08245 Mur ligase middle domain AYR69_16930 PF03717 Penicillin-binding Protein dimerisation domain AYR69_16930 PF00905 Penicillin binding protein transpeptidase domain AYR69_16940 PF01795 MraW methylase family AYR69_16955 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR69_16970 PF00324 Amino acid permease AYR69_16980 PF01527 Transposase AYR69_16985 PF13333 Integrase core domain AYR69_16985 PF00665 Integrase core domain AYR69_16985 PF13276 HTH-like domain AYR69_17015 PF01545 Cation efflux family AYR69_17020 PF00873 AcrB/AcrD/AcrF family AYR69_17025 PF00529 HlyD membrane-fusion protein of T1SS AYR69_17025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR69_17040 PF04191 Phospholipid methyltransferase AYR69_17065 PF00005 ABC transporter AYR69_17065 PF12848 ABC transporter AYR69_17070 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR69_17075 PF00106 short chain dehydrogenase AYR69_17080 PF01740 STAS domain AYR69_17080 PF00916 Sulfate permease family AYR69_17085 PF16921 Tex protein YqgF-like domain AYR69_17085 PF09371 Tex-like protein N-terminal domain AYR69_17085 PF00575 S1 RNA binding domain AYR69_17085 PF17674 HHH domain AYR69_17090 PF00072 Response regulator receiver domain AYR69_17090 PF00486 Transcriptional regulatory protein, C terminal AYR69_17095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_17095 PF00512 His Kinase A (phospho-acceptor) domain AYR69_17095 PF00672 HAMP domain AYR69_17100 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AYR69_17100 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AYR69_17105 PF00583 Acetyltransferase (GNAT) family AYR69_17125 PF00475 Imidazoleglycerol-phosphate dehydratase AYR69_17130 PF00117 Glutamine amidotransferase class-I AYR69_17145 PF00977 Histidine biosynthesis protein AYR69_17170 PF01636 Phosphotransferase enzyme family AYR69_17175 PF00977 Histidine biosynthesis protein AYR69_17215 PF02705 K+ potassium transporter AYR69_17235 PF00665 Integrase core domain AYR69_17235 PF13333 Integrase core domain AYR69_17235 PF13276 HTH-like domain AYR69_17240 PF01527 Transposase AYR69_17250 PF01638 HxlR-like helix-turn-helix AYR69_17275 PF12833 Helix-turn-helix domain AYR69_17275 PF02311 AraC-like ligand binding domain AYR69_17280 PF00248 Aldo/keto reductase family AYR69_17300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_17300 PF03466 LysR substrate binding domain AYR69_17305 PF07690 Major Facilitator Superfamily AYR69_17325 PF01593 Flavin containing amine oxidoreductase AYR69_17330 PF02678 Pirin AYR69_17330 PF05726 Pirin C-terminal cupin domain AYR69_17335 PF00857 Isochorismatase family AYR69_17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_17345 PF00171 Aldehyde dehydrogenase family AYR69_17350 PF00202 Aminotransferase class-III AYR69_17355 PF00155 Aminotransferase class I and II AYR69_17355 PF00392 Bacterial regulatory proteins, gntR family AYR69_17360 PF00324 Amino acid permease AYR69_17370 PF03591 AzlC protein AYR69_17380 PF00436 Single-strand binding protein family AYR69_17385 PF07690 Major Facilitator Superfamily AYR69_17395 PF02581 Thiamine monophosphate synthase AYR69_17395 PF08543 Phosphomethylpyrimidine kinase AYR69_17395 PF03070 TENA/THI-4/PQQC family AYR69_17400 PF06942 GlpM protein AYR69_17410 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_17410 PF00107 Zinc-binding dehydrogenase AYR69_17415 PF00440 Bacterial regulatory proteins, tetR family AYR69_17415 PF16925 Tetracyclin repressor-like, C-terminal domain AYR69_17420 PF00005 ABC transporter AYR69_17420 PF17755 UvrA DNA-binding domain AYR69_17420 PF17760 UvrA interaction domain AYR69_17425 PF17158 Membrane-associated sensor, integral membrane domain AYR69_17425 PF00990 Diguanylate cyclase, GGDEF domain AYR69_17435 PF02028 BCCT, betaine/carnitine/choline family transporter AYR69_17445 PF00474 Sodium:solute symporter family AYR69_17450 PF04341 Protein of unknown function, DUF485 AYR69_17455 PF00072 Response regulator receiver domain AYR69_17455 PF01627 Hpt domain AYR69_17455 PF00512 His Kinase A (phospho-acceptor) domain AYR69_17455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_17455 PF00672 HAMP domain AYR69_17465 PF00196 Bacterial regulatory proteins, luxR family AYR69_17465 PF00072 Response regulator receiver domain AYR69_17470 PF03358 NADPH-dependent FMN reductase AYR69_17475 PF00296 Luciferase-like monooxygenase AYR69_17480 PF01037 Lrp/AsnC ligand binding domain AYR69_17485 PF00857 Isochorismatase family AYR69_17490 PF13193 AMP-binding enzyme C-terminal domain AYR69_17490 PF16177 Acetyl-coenzyme A synthetase N-terminus AYR69_17490 PF00501 AMP-binding enzyme AYR69_17500 PF00924 Mechanosensitive ion channel AYR69_17505 PF04452 RNA methyltransferase AYR69_17510 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYR69_17515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR69_17525 PF03462 PCRF domain AYR69_17525 PF00472 RF-1 domain AYR69_17535 PF02272 DHHA1 domain AYR69_17535 PF17768 RecJ OB domain AYR69_17535 PF01368 DHH family AYR69_17540 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AYR69_17540 PF01243 Pyridoxamine 5'-phosphate oxidase AYR69_17545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR69_17545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR69_17545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR69_17545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR69_17550 PF00571 CBS domain AYR69_17550 PF00478 IMP dehydrogenase / GMP reductase domain AYR69_17555 PF03692 Putative zinc- or iron-chelating domain AYR69_17560 PF00258 Flavodoxin AYR69_17560 PF01613 Flavin reductase like domain AYR69_17570 PF01169 Uncharacterized protein family UPF0016 AYR69_17580 PF00364 Biotin-requiring enzyme AYR69_17580 PF02817 e3 binding domain AYR69_17580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR69_17585 PF17831 Pyruvate dehydrogenase E1 component middle domain AYR69_17585 PF00456 Transketolase, thiamine diphosphate binding domain AYR69_17590 PF01551 Peptidase family M23 AYR69_17600 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AYR69_17605 PF00091 Tubulin/FtsZ family, GTPase domain AYR69_17605 PF12327 FtsZ family, C-terminal domain AYR69_17610 PF02491 SHS2 domain inserted in FTSA AYR69_17615 PF03799 Cell division protein FtsQ AYR69_17615 PF08478 POTRA domain, FtsQ-type AYR69_17620 PF01820 D-ala D-ala ligase N-terminus AYR69_17620 PF07478 D-ala D-ala ligase C-terminus AYR69_17625 PF02875 Mur ligase family, glutamate ligase domain AYR69_17625 PF08245 Mur ligase middle domain AYR69_17625 PF01225 Mur ligase family, catalytic domain AYR69_17630 PF04101 Glycosyltransferase family 28 C-terminal domain AYR69_17630 PF03033 Glycosyltransferase family 28 N-terminal domain AYR69_17635 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYR69_17635 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYR69_17645 PF00593 TonB dependent receptor AYR69_17645 PF07715 TonB-dependent Receptor Plug Domain AYR69_17655 PF00156 Phosphoribosyl transferase domain AYR69_17660 PF03372 Endonuclease/Exonuclease/phosphatase family AYR69_17665 PF03960 ArsC family AYR69_17675 PF07859 alpha/beta hydrolase fold AYR69_17680 PF00990 Diguanylate cyclase, GGDEF domain AYR69_17680 PF07694 5TMR of 5TMR-LYT AYR69_17685 PF02683 Cytochrome C biogenesis protein transmembrane region AYR69_17685 PF11412 Disulphide bond corrector protein DsbC AYR69_17715 PF00576 HIUase/Transthyretin family AYR69_17720 PF00860 Permease family AYR69_17730 PF01494 FAD binding domain AYR69_17735 PF03561 Allantoicase repeat AYR69_17740 PF04115 Ureidoglycolate lyase AYR69_17745 PF00106 short chain dehydrogenase AYR69_17750 PF01751 Toprim domain AYR69_17750 PF00986 DNA gyrase B subunit, carboxyl terminus AYR69_17750 PF00204 DNA gyrase B AYR69_17750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_17755 PF05728 Uncharacterised protein family (UPF0227) AYR69_17810 PF02600 Disulfide bond formation protein DsbB AYR69_17815 PF04262 Glutamate-cysteine ligase AYR69_17830 PF04286 Protein of unknown function (DUF445) AYR69_17835 PF00155 Aminotransferase class I and II AYR69_17840 PF01554 MatE AYR69_17845 PF00106 short chain dehydrogenase AYR69_17855 PF00072 Response regulator receiver domain AYR69_17855 PF00486 Transcriptional regulatory protein, C terminal AYR69_17860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR69_17860 PF00512 His Kinase A (phospho-acceptor) domain AYR69_17860 PF00989 PAS fold AYR69_17860 PF11808 Phosphate regulon sensor protein PhoR AYR69_17870 PF02666 Phosphatidylserine decarboxylase AYR69_17875 PF00581 Rhodanese-like domain AYR69_17880 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYR69_17880 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AYR69_17885 PF02580 D-Tyr-tRNA(Tyr) deacylase AYR69_17910 PF00925 GTP cyclohydrolase II AYR69_17910 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYR69_17915 PF00885 6,7-dimethyl-8-ribityllumazine synthase AYR69_17920 PF01029 NusB family AYR69_17925 PF02769 AIR synthase related protein, C-terminal domain AYR69_17925 PF00586 AIR synthase related protein, N-terminal domain AYR69_17930 PF04608 Phosphatidylglycerophosphatase A AYR69_17935 PF12804 MobA-like NTP transferase domain AYR69_17935 PF14602 Hexapeptide repeat of succinyl-transferase AYR69_17935 PF00132 Bacterial transferase hexapeptide (six repeats) AYR69_17940 PF01380 SIS domain AYR69_17945 PF08721 TnsA endonuclease C terminal AYR69_17945 PF08722 TnsA endonuclease N terminal AYR69_17950 PF00665 Integrase core domain AYR69_17955 PF13401 AAA domain AYR69_17955 PF11426 Tn7 transposition regulator TnsC AYR69_17960 PF15978 Tn7-like transposition protein D AYR69_17960 PF06527 TniQ AYR69_17975 PF02086 D12 class N6 adenine-specific DNA methyltransferase AYR69_17985 PF01177 Asp/Glu/Hydantoin racemase AYR69_17990 PF13419 Haloacid dehalogenase-like hydrolase AYR69_18000 PF00491 Arginase family AYR69_18005 PF01979 Amidohydrolase family AYR69_18010 PF00324 Amino acid permease AYR69_18015 PF00221 Aromatic amino acid lyase AYR69_18020 PF17391 Urocanase N-terminal domain AYR69_18020 PF17392 Urocanase C-terminal domain AYR69_18020 PF01175 Urocanase Rossmann-like domain AYR69_18025 PF05962 HutD AYR69_18030 PF00392 Bacterial regulatory proteins, gntR family AYR69_18030 PF07702 UTRA domain AYR69_18040 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYR69_18040 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYR69_18050 PF00324 Amino acid permease AYR69_18060 PF14497 Glutathione S-transferase, C-terminal domain AYR69_18060 PF02798 Glutathione S-transferase, N-terminal domain AYR69_18065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR69_18075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR69_18080 PF04463 Protein of unknown function (DUF523) AYR69_18085 PF01554 MatE AYR69_18090 PF01758 Sodium Bile acid symporter family AYR69_18095 PF00857 Isochorismatase family AYR69_18100 PF00701 Dihydrodipicolinate synthetase family AYR69_18110 PF01259 SAICAR synthetase AYR69_18120 PF01226 Formate/nitrite transporter AYR69_18125 PF00004 ATPase family associated with various cellular activities (AAA) AYR69_18125 PF12002 MgsA AAA+ ATPase C terminal AYR69_18125 PF16193 AAA C-terminal domain AYR69_18130 PF07995 Glucose / Sorbosone dehydrogenase AYR69_18135 PF03692 Putative zinc- or iron-chelating domain AYR69_18140 PF07043 Protein of unknown function (DUF1328) AYR69_18155 PF14815 NUDIX domain AYR69_18155 PF00730 HhH-GPD superfamily base excision DNA repair protein AYR69_18155 PF00633 Helix-hairpin-helix motif AYR69_18155 PF10576 Iron-sulfur binding domain of endonuclease III AYR69_18170 PF03352 Methyladenine glycosylase AYR69_18175 PF08240 Alcohol dehydrogenase GroES-like domain AYR69_18175 PF00107 Zinc-binding dehydrogenase AYR69_18180 PF00155 Aminotransferase class I and II AYR69_18180 PF00392 Bacterial regulatory proteins, gntR family AYR69_18190 PF03466 LysR substrate binding domain AYR69_18190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_18200 PF07690 Major Facilitator Superfamily AYR69_18210 PF05173 Dihydrodipicolinate reductase, C-terminus AYR69_18210 PF01113 Dihydrodipicolinate reductase, N-terminus AYR69_18220 PF00684 DnaJ central domain AYR69_18220 PF00226 DnaJ domain AYR69_18220 PF01556 DnaJ C terminal domain AYR69_18230 PF00873 AcrB/AcrD/AcrF family AYR69_18235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR69_18240 PF13276 HTH-like domain AYR69_18240 PF00665 Integrase core domain AYR69_18240 PF13333 Integrase core domain AYR69_18245 PF01527 Transposase AYR69_18250 PF00440 Bacterial regulatory proteins, tetR family AYR69_18250 PF08361 MAATS-type transcriptional repressor, C-terminal region AYR69_18255 PF00311 Phosphoenolpyruvate carboxylase AYR69_18260 PF00860 Permease family AYR69_18265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_18265 PF03466 LysR substrate binding domain AYR69_18280 PF00920 Dehydratase family AYR69_18285 PF02911 Formyl transferase, C-terminal domain AYR69_18285 PF00551 Formyl transferase AYR69_18290 PF01189 16S rRNA methyltransferase RsmB/F AYR69_18290 PF01029 NusB family AYR69_18300 PF00209 Sodium:neurotransmitter symporter family AYR69_18340 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYR69_18345 PF07859 alpha/beta hydrolase fold AYR69_18365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR69_18365 PF03466 LysR substrate binding domain AYR69_18370 PF01025 GrpE AYR69_18375 PF00012 Hsp70 protein AYR69_18395 PF13406 Transglycosylase SLT domain AYR69_18400 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AYR69_18400 PF02222 ATP-grasp domain AYR69_18405 PF00731 AIR carboxylase AYR69_18420 PF01225 Mur ligase family, catalytic domain AYR69_18420 PF02875 Mur ligase family, glutamate ligase domain AYR69_18420 PF08245 Mur ligase middle domain AYR69_18430 PF01569 PAP2 superfamily AYR69_18435 PF03741 Integral membrane protein TerC family AYR69_18445 PF03738 Glutathionylspermidine synthase preATP-grasp AYR69_18450 PF00355 Rieske [2Fe-2S] domain AYR69_18455 PF01979 Amidohydrolase family AYR69_18465 PF00156 Phosphoribosyl transferase domain AYR69_18475 PF10411 Disulfide bond isomerase protein N-terminus AYR69_18475 PF13098 Thioredoxin-like domain AYR69_18480 PF16916 Dimerisation domain of Zinc Transporter AYR69_18480 PF01545 Cation efflux family AYR69_18485 PF02583 Metal-sensitive transcriptional repressor AYR69_18490 PF01926 50S ribosome-binding GTPase AYR69_18490 PF12631 MnmE helical domain AYR69_18490 PF10396 GTP-binding protein TrmE N-terminus AYR69_18495 PF14849 YidC periplasmic domain AYR69_18495 PF02096 60Kd inner membrane protein AYR69_18500 PF01809 Putative membrane protein insertion efficiency factor AYR69_18505 PF00825 Ribonuclease P AYR69_18510 PF00468 Ribosomal protein L34