AYR69_00005 SM00382 ATPases associated with a variety of cellular activities AYR69_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AYR69_00010 SM00480 DNA polymerase III beta subunit AYR69_00020 SM00387 Histidine kinase-like ATPases AYR69_00020 SM00433 TopoisomeraseII AYR69_00035 SM00382 ATPases associated with a variety of cellular activities AYR69_00100 SM00248 ankyrin repeats AYR69_00125 SM00904 Riboflavin kinase AYR69_00145 SM00382 ATPases associated with a variety of cellular activities AYR69_00160 SM00062 Bacterial periplasmic substrate-binding proteins AYR69_00165 SM00062 Bacterial periplasmic substrate-binding proteins AYR69_00245 SM00644 AYR69_00245 AYR69_00270 SM00226 Low molecular weight phosphatase family AYR69_00280 SM00984 UDP binding domain AYR69_00355 SM00984 UDP binding domain AYR69_00385 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_00385 SM00895 AYR69_00385 AYR69_00405 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_00405 SM00895 AYR69_00405 AYR69_00480 SM00344 helix_turn_helix ASNC type AYR69_00490 SM01005 Alanine racemase, C-terminal domain AYR69_00560 SM00421 helix_turn_helix, Lux Regulon AYR69_00670 SM00836 DALR anticodon binding domain AYR69_00670 SM01016 Arginyl tRNA synthetase N terminal dom AYR69_00675 SM00919 Malic enzyme, NAD binding domain AYR69_00675 SM01274 AYR69_00675 AYR69_00695 SM00382 ATPases associated with a variety of cellular activities AYR69_00745 SM00382 ATPases associated with a variety of cellular activities AYR69_00765 SM00342 helix_turn_helix, arabinose operon control protein AYR69_00890 SM00422 helix_turn_helix, mercury resistance AYR69_00900 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_00920 SM00641 Glycosyl hydrolases family 25 AYR69_00935 SM01091 Transporter associated domain AYR69_00955 SM00434 DNA Topoisomerase IV AYR69_01000 SM01130 AYR69_01000 AYR69_01005 SM01007 Class II Aldolase and Adducin N-terminal domain AYR69_01010 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_01030 SM00382 ATPases associated with a variety of cellular activities AYR69_01110 SM00938 Nitrogen regulatory protein P-II AYR69_01175 SM00245 tail specific protease AYR69_01180 SM00382 ATPases associated with a variety of cellular activities AYR69_01180 SM00448 cheY-homologous receiver domain AYR69_01185 SM00387 Histidine kinase-like ATPases AYR69_01185 SM00388 His Kinase A (phosphoacceptor) domain AYR69_01190 SM00421 helix_turn_helix, Lux Regulon AYR69_01190 SM00448 cheY-homologous receiver domain AYR69_01220 SM00899 AYR69_01220 AYR69_01310 SM00448 cheY-homologous receiver domain AYR69_01310 SM00850 LytTr DNA-binding domain AYR69_01340 SM00528 Domain in histone-like proteins of HNS family AYR69_01350 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYR69_01360 SM00240 Forkhead associated domain AYR69_01410 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AYR69_01410 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYR69_01415 SM00649 Ribosomal protein L11/L12 AYR69_01440 SM00663 RNA polymerase I subunit A N-terminus AYR69_01480 SM00387 Histidine kinase-like ATPases AYR69_01505 SM00422 helix_turn_helix, mercury resistance AYR69_01550 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYR69_01550 SM00465 GIY-YIG type nucleases (URI domain) AYR69_01565 SM00342 helix_turn_helix, arabinose operon control protein AYR69_01575 SM00346 helix_turn_helix isocitrate lyase regulation AYR69_01595 SM00732 Likely ribonuclease with RNase H fold. AYR69_01620 SM00967 RNA 2'-O ribose methyltransferase substrate binding AYR69_01680 SM00316 Ribosomal protein S1-like RNA-binding domain AYR69_01785 SM00382 ATPases associated with a variety of cellular activities AYR69_01795 SM01387 AYR69_01795 AYR69_01800 SM00316 Ribosomal protein S1-like RNA-binding domain AYR69_01800 SM00322 K homology RNA-binding domain AYR69_01815 SM00271 DnaJ molecular chaperone homology domain AYR69_01835 SM00487 DEAD-like helicases superfamily AYR69_01835 SM00490 helicase superfamily c-terminal domain AYR69_01865 SM00116 Domain in cystathionine beta-synthase and other proteins. AYR69_01865 SM01091 Transporter associated domain AYR69_01900 SM00849 Metallo-beta-lactamase superfamily AYR69_02005 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_02035 SM00316 Ribosomal protein S1-like RNA-binding domain AYR69_02040 SM00363 S4 RNA-binding domain AYR69_02080 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AYR69_02130 SM01329 AYR69_02130 AYR69_02145 SM00316 Ribosomal protein S1-like RNA-binding domain AYR69_02150 SM00342 helix_turn_helix, arabinose operon control protein AYR69_02160 SM00870 AYR69_02160 AYR69_02175 SM00859 Semialdehyde dehydrogenase, NAD binding domain AYR69_02205 SM00382 ATPases associated with a variety of cellular activities AYR69_02215 SM00829 Enoylreductase AYR69_02230 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AYR69_02230 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AYR69_02230 SM00493 AYR69_02230 AYR69_02250 SM00360 RNA recognition motif AYR69_02390 SM00671 Sel1-like repeats. AYR69_02405 SM00917 LeuA allosteric (dimerisation) domain AYR69_02410 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AYR69_02430 SM00382 ATPases associated with a variety of cellular activities AYR69_02430 SM00994 ClpX C4-type zinc finger AYR69_02430 SM01086 C-terminal, D2-small domain, of ClpB protein AYR69_02505 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYR69_02505 SM00245 tail specific protease AYR69_02515 SM00014 Acid phosphatase homologues AYR69_02525 SM00562 AYR69_02525 AYR69_02535 SM00028 Tetratricopeptide repeats AYR69_02560 SM00564 beta-propeller repeat AYR69_02575 SM00563 Phosphate acyltransferases AYR69_02640 SM00825 Beta-ketoacyl synthase AYR69_02650 SM00822 AYR69_02650 AYR69_02655 SM00825 Beta-ketoacyl synthase AYR69_02680 SM00450 Rhodanese Homology Domain AYR69_02690 SM00479 AYR69_02690 AYR69_02710 SM00382 ATPases associated with a variety of cellular activities AYR69_02770 SM01236 AYR69_02770 AYR69_02840 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AYR69_02840 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AYR69_02880 SM00073 Histidine Phosphotransfer domain AYR69_02880 SM00387 Histidine kinase-like ATPases AYR69_02880 SM00388 His Kinase A (phosphoacceptor) domain AYR69_02880 SM00448 cheY-homologous receiver domain AYR69_02900 SM00954 Region found in RelA / SpoT proteins AYR69_02915 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYR69_02960 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYR69_03015 SM00873 B3/4 domain AYR69_03015 SM00874 tRNA synthetase B5 domain AYR69_03015 SM00896 Ferredoxin-fold anticodon binding domain AYR69_03020 SM00411 bacterial (prokaryotic) histone like domain AYR69_03030 SM00357 Cold shock protein domain AYR69_03030 SM00382 ATPases associated with a variety of cellular activities AYR69_03030 SM00959 Rho termination factor, N-terminal domain AYR69_03050 SM00977 TilS substrate C-terminal domain AYR69_03065 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AYR69_03065 SM00474 3'-5' exonuclease AYR69_03065 SM00475 5'-3' exonuclease AYR69_03065 SM00482 DNA polymerase A domain AYR69_03085 SM00382 ATPases associated with a variety of cellular activities AYR69_03095 SM00347 helix_turn_helix multiple antibiotic resistance protein AYR69_03115 SM00331 Sigma factor PP2C-like phosphatases AYR69_03405 SM00342 helix_turn_helix, arabinose operon control protein AYR69_03435 SM00903 Flavin reductase like domain AYR69_03480 SM00564 beta-propeller repeat AYR69_03580 SM00387 Histidine kinase-like ATPases AYR69_03610 SM00448 cheY-homologous receiver domain AYR69_03610 SM00862 Transcriptional regulatory protein, C terminal AYR69_03615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYR69_03615 SM00387 Histidine kinase-like ATPases AYR69_03615 SM00388 His Kinase A (phosphoacceptor) domain AYR69_03625 SM00267 diguanylate cyclase AYR69_03650 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYR69_03655 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYR69_03655 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYR69_03700 SM00357 Cold shock protein domain AYR69_03840 SM00382 ATPases associated with a variety of cellular activities AYR69_03840 SM00962 SRP54-type protein, GTPase domain AYR69_03840 SM00963 SRP54-type protein, helical bundle domain AYR69_03860 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_03870 SM00771 ZipA, C-terminal domain (FtsZ-binding) AYR69_03875 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYR69_03875 SM00292 breast cancer carboxy-terminal domain AYR69_03875 SM00532 Ligase N family AYR69_03925 SM00363 S4 RNA-binding domain AYR69_03960 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AYR69_03965 SM00822 AYR69_03965 AYR69_03975 SM00257 Lysin motif AYR69_04020 SM01400 AYR69_04020 AYR69_04055 SM00028 Tetratricopeptide repeats AYR69_04065 SM00400 zinc finger AYR69_04065 SM00493 AYR69_04065 AYR69_04075 SM00363 S4 RNA-binding domain AYR69_04125 SM01329 AYR69_04125 AYR69_04185 SM00825 Beta-ketoacyl synthase AYR69_04205 SM00838 Elongation factor G C-terminus AYR69_04205 SM00889 Elongation factor G, domain IV AYR69_04245 SM00843 AYR69_04245 AYR69_04285 SM00563 Phosphate acyltransferases AYR69_04355 SM00382 ATPases associated with a variety of cellular activities AYR69_04400 SM01004 Delta-aminolevulinic acid dehydratase AYR69_04445 SM00901 AYR69_04445 AYR69_04485 SM00479 AYR69_04485 AYR69_04520 SM00530 Helix-turn-helix XRE-family like proteins AYR69_04575 SM00382 ATPases associated with a variety of cellular activities AYR69_04595 SM00530 Helix-turn-helix XRE-family like proteins AYR69_04840 SM00487 DEAD-like helicases superfamily AYR69_04920 SM01040 BRO family, N-terminal domain AYR69_05010 SM01130 AYR69_05010 AYR69_05030 SM00965 Secretin and TonB N terminus short domain AYR69_05145 SM01322 AYR69_05145 AYR69_05200 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AYR69_05210 SM00382 ATPases associated with a variety of cellular activities AYR69_05225 SM00346 helix_turn_helix isocitrate lyase regulation AYR69_05245 SM00822 AYR69_05245 AYR69_05315 SM00342 helix_turn_helix, arabinose operon control protein AYR69_05340 SM00822 AYR69_05340 AYR69_05355 SM00861 Transketolase, pyrimidine binding domain AYR69_05360 SM01018 B12 binding domain AYR69_05420 SM00947 Carbonic anhydrase AYR69_05430 SM00382 ATPases associated with a variety of cellular activities AYR69_05530 SM01091 Transporter associated domain AYR69_05575 SM00988 UreE urease accessory protein, N-terminal domain AYR69_05620 SM00478 endonuclease III AYR69_05630 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYR69_05650 SM00382 ATPases associated with a variety of cellular activities AYR69_05650 SM00464 Found in ATP-dependent protease La (LON) AYR69_05750 SM00530 Helix-turn-helix XRE-family like proteins AYR69_05955 SM00287 Bacterial SH3 domain homologues AYR69_05985 SM00530 Helix-turn-helix XRE-family like proteins AYR69_06105 SM01011 Aminopeptidase P, N-terminal domain AYR69_06125 SM00422 helix_turn_helix, mercury resistance AYR69_06180 SM00479 AYR69_06180 AYR69_06185 SM00257 Lysin motif AYR69_06205 SM00382 ATPases associated with a variety of cellular activities AYR69_06225 SM00479 AYR69_06225 AYR69_06235 SM00267 diguanylate cyclase AYR69_06270 SM00857 Resolvase, N terminal domain AYR69_06290 SM00857 Resolvase, N terminal domain AYR69_06320 SM00220 Serine/Threonine protein kinases, catalytic domain AYR69_06395 SM01034 Sensors of blue-light using FAD AYR69_06410 SM00342 helix_turn_helix, arabinose operon control protein AYR69_06430 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_06430 SM00895 AYR69_06430 AYR69_06445 SM00972 Spore Coat Protein U domain AYR69_06545 SM00382 ATPases associated with a variety of cellular activities AYR69_06610 SM00849 Metallo-beta-lactamase superfamily AYR69_06620 SM00382 ATPases associated with a variety of cellular activities AYR69_06620 SM00930 AYR69_06620 AYR69_06630 SM01209 AYR69_06630 AYR69_06630 SM01210 AYR69_06630 AYR69_06635 SM00798 AICARFT/IMPCHase bienzyme AYR69_06635 SM00851 MGS-like domain AYR69_06660 SM01228 AYR69_06660 AYR69_06680 SM00460 Transglutaminase/protease-like homologues AYR69_06690 SM01005 Alanine racemase, C-terminal domain AYR69_06805 SM00937 AYR69_06805 AYR69_06820 SM00062 Bacterial periplasmic substrate-binding proteins AYR69_06825 SM00342 helix_turn_helix, arabinose operon control protein AYR69_06830 SM00822 AYR69_06830 AYR69_06845 SM00903 Flavin reductase like domain AYR69_06860 SM00905 Dihydroneopterin aldolase AYR69_06885 SM00387 Histidine kinase-like ATPases AYR69_06885 SM00388 His Kinase A (phosphoacceptor) domain AYR69_06890 SM00448 cheY-homologous receiver domain AYR69_06890 SM00862 Transcriptional regulatory protein, C terminal AYR69_06895 SM01230 AYR69_06895 AYR69_06975 SM00363 S4 RNA-binding domain AYR69_07000 SM00853 MutL C terminal dimerisation domain AYR69_07000 SM01340 AYR69_07000 AYR69_07085 SM00862 Transcriptional regulatory protein, C terminal AYR69_07100 SM00382 ATPases associated with a variety of cellular activities AYR69_07110 SM00342 helix_turn_helix, arabinose operon control protein AYR69_07110 SM00871 Bacterial transcription activator, effector binding domain AYR69_07150 SM00830 Chorismate mutase type II AYR69_07155 SM00344 helix_turn_helix ASNC type AYR69_07235 SM00382 ATPases associated with a variety of cellular activities AYR69_07260 SM00831 Cation transporter/ATPase, N-terminus AYR69_07275 SM00344 helix_turn_helix ASNC type AYR69_07305 SM00822 AYR69_07305 AYR69_07330 SM00382 ATPases associated with a variety of cellular activities AYR69_07355 SM00226 Low molecular weight phosphatase family AYR69_07390 SM01236 AYR69_07390 AYR69_07405 SM00878 Biotin carboxylase C-terminal domain AYR69_07430 SM00448 cheY-homologous receiver domain AYR69_07430 SM01012 AYR69_07430 AYR69_07450 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYR69_07460 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYR69_07465 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_07480 SM00852 Probable molybdopterin binding domain AYR69_07485 SM00852 Probable molybdopterin binding domain AYR69_07495 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_07580 SM00382 ATPases associated with a variety of cellular activities AYR69_07580 SM00448 cheY-homologous receiver domain AYR69_07585 SM00091 PAS domain AYR69_07585 SM00387 Histidine kinase-like ATPases AYR69_07585 SM00388 His Kinase A (phosphoacceptor) domain AYR69_07590 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_07620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYR69_07630 SM00935 Outer membrane protein (OmpH-like) AYR69_07665 SM00382 ATPases associated with a variety of cellular activities AYR69_07670 SM00363 S4 RNA-binding domain AYR69_07700 SM00344 helix_turn_helix ASNC type AYR69_07745 SM00052 Putative diguanylate phosphodiesterase AYR69_07745 SM00091 PAS domain AYR69_07745 SM00267 diguanylate cyclase AYR69_07755 SM00347 helix_turn_helix multiple antibiotic resistance protein AYR69_07830 SM00116 Domain in cystathionine beta-synthase and other proteins. AYR69_07855 SM00382 ATPases associated with a variety of cellular activities AYR69_07855 SM00962 SRP54-type protein, GTPase domain AYR69_07855 SM00963 SRP54-type protein, helical bundle domain AYR69_07925 SM01264 AYR69_07925 AYR69_07965 SM00859 Semialdehyde dehydrogenase, NAD binding domain AYR69_07980 SM00382 ATPases associated with a variety of cellular activities AYR69_07980 SM01086 C-terminal, D2-small domain, of ClpB protein AYR69_08045 SM01192 AYR69_08045 AYR69_08045 SM01193 AYR69_08045 AYR69_08065 SM00882 Coenzyme A transferase AYR69_08070 SM00882 Coenzyme A transferase AYR69_08080 SM00998 Adenylosuccinate lyase C-terminus AYR69_08115 SM00710 Parallel beta-helix repeats AYR69_08125 SM00564 beta-propeller repeat AYR69_08145 SM00849 Metallo-beta-lactamase superfamily AYR69_08150 SM00346 helix_turn_helix isocitrate lyase regulation AYR69_08170 SM00855 Phosphoglycerate mutase family AYR69_08190 SM00347 helix_turn_helix multiple antibiotic resistance protein AYR69_08235 SM00903 Flavin reductase like domain AYR69_08240 SM00342 helix_turn_helix, arabinose operon control protein AYR69_08275 SM00882 Coenzyme A transferase AYR69_08280 SM00882 Coenzyme A transferase AYR69_08295 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AYR69_08310 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_08310 SM00895 AYR69_08310 AYR69_08345 SM00855 Phosphoglycerate mutase family AYR69_08360 SM00091 PAS domain AYR69_08360 SM00382 ATPases associated with a variety of cellular activities AYR69_08380 SM00829 Enoylreductase AYR69_08400 SM01060 AYR69_08400 AYR69_08425 SM00347 helix_turn_helix multiple antibiotic resistance protein AYR69_08445 SM00422 helix_turn_helix, mercury resistance AYR69_08530 SM00912 haemagglutination activity domain AYR69_08560 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_08560 SM00866 AYR69_08560 AYR69_08590 SM00346 helix_turn_helix isocitrate lyase regulation AYR69_08675 SM00342 helix_turn_helix, arabinose operon control protein AYR69_08690 SM00829 Enoylreductase AYR69_08705 SM00382 ATPases associated with a variety of cellular activities AYR69_08715 SM00342 helix_turn_helix, arabinose operon control protein AYR69_08725 SM01400 AYR69_08725 AYR69_08800 SM00421 helix_turn_helix, Lux Regulon AYR69_08855 SM00530 Helix-turn-helix XRE-family like proteins AYR69_08895 SM00822 AYR69_08895 AYR69_08925 SM00342 helix_turn_helix, arabinose operon control protein AYR69_08935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYR69_08935 SM00387 Histidine kinase-like ATPases AYR69_08935 SM00388 His Kinase A (phosphoacceptor) domain AYR69_08940 SM00448 cheY-homologous receiver domain AYR69_08940 SM00862 Transcriptional regulatory protein, C terminal AYR69_09015 SM00829 Enoylreductase AYR69_09040 SM00155 Phospholipase D. Active site motifs. AYR69_09065 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_09110 SM00382 ATPases associated with a variety of cellular activities AYR69_09145 SM00342 helix_turn_helix, arabinose operon control protein AYR69_09155 SM00903 Flavin reductase like domain AYR69_09180 SM00342 helix_turn_helix, arabinose operon control protein AYR69_09215 SM00882 Coenzyme A transferase AYR69_09220 SM00882 Coenzyme A transferase AYR69_09275 SM00567 E-Z type HEAT repeats AYR69_09280 SM00382 ATPases associated with a variety of cellular activities AYR69_09305 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_09305 SM00866 AYR69_09305 AYR69_09325 SM00342 helix_turn_helix, arabinose operon control protein AYR69_09350 SM00849 Metallo-beta-lactamase superfamily AYR69_09355 SM00382 ATPases associated with a variety of cellular activities AYR69_09365 SM00829 Enoylreductase AYR69_09385 SM00861 Transketolase, pyrimidine binding domain AYR69_09395 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_09410 SM00267 diguanylate cyclase AYR69_09435 SM00382 ATPases associated with a variety of cellular activities AYR69_09465 SM00341 Helicase and RNase D C-terminal AYR69_09465 SM00474 3'-5' exonuclease AYR69_09470 SM00493 AYR69_09470 AYR69_09525 SM01324 AYR69_09525 AYR69_09565 SM00382 ATPases associated with a variety of cellular activities AYR69_09625 SM00855 Phosphoglycerate mutase family AYR69_09650 SM01006 Siderophore biosynthesis protein domain AYR69_09740 SM00342 helix_turn_helix, arabinose operon control protein AYR69_09750 SM00411 bacterial (prokaryotic) histone like domain AYR69_09785 SM00271 DnaJ molecular chaperone homology domain AYR69_09800 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AYR69_09810 SM00487 DEAD-like helicases superfamily AYR69_09810 SM00490 helicase superfamily c-terminal domain AYR69_09810 SM00982 AYR69_09810 AYR69_09810 SM01058 CarD-like/TRCF domain AYR69_09875 SM00382 ATPases associated with a variety of cellular activities AYR69_09945 SM00342 helix_turn_helix, arabinose operon control protein AYR69_09960 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AYR69_09970 SM00411 bacterial (prokaryotic) histone like domain AYR69_09975 SM00316 Ribosomal protein S1-like RNA-binding domain AYR69_10000 SM00986 Uracil DNA glycosylase superfamily AYR69_10000 SM00987 UreE urease accessory protein, C-terminal domain AYR69_10060 SM00382 ATPases associated with a variety of cellular activities AYR69_10075 SM00470 ParB-like nuclease domain AYR69_10135 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AYR69_10145 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYR69_10165 SM00382 ATPases associated with a variety of cellular activities AYR69_10175 SM00342 helix_turn_helix, arabinose operon control protein AYR69_10195 SM00344 helix_turn_helix ASNC type AYR69_10230 SM00867 YceI-like domain AYR69_10240 SM00861 Transketolase, pyrimidine binding domain AYR69_10275 SM00530 Helix-turn-helix XRE-family like proteins AYR69_10295 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_10295 SM00876 Biotin and Thiamin Synthesis associated domain AYR69_10375 SM01236 AYR69_10375 AYR69_10385 SM00563 Phosphate acyltransferases AYR69_10395 SM00344 helix_turn_helix ASNC type AYR69_10405 SM00382 ATPases associated with a variety of cellular activities AYR69_10420 SM00062 Bacterial periplasmic substrate-binding proteins AYR69_10455 SM00382 ATPases associated with a variety of cellular activities AYR69_10455 SM00930 AYR69_10455 AYR69_10475 SM00100 Cyclic nucleotide-monophosphate binding domain AYR69_10475 SM00419 helix_turn_helix, cAMP Regulatory protein AYR69_10510 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYR69_10525 SM00342 helix_turn_helix, arabinose operon control protein AYR69_10550 SM00870 AYR69_10550 AYR69_10555 SM00481 DNA polymerase alpha chain like domain AYR69_10605 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYR69_10635 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_10635 SM00895 AYR69_10635 AYR69_10660 SM00382 ATPases associated with a variety of cellular activities AYR69_10665 SM00062 Bacterial periplasmic substrate-binding proteins AYR69_10710 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_10730 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AYR69_10780 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_10815 SM00822 AYR69_10815 AYR69_10820 SM00450 Rhodanese Homology Domain AYR69_10850 SM00062 Bacterial periplasmic substrate-binding proteins AYR69_10855 SM00062 Bacterial periplasmic substrate-binding proteins AYR69_10860 SM00382 ATPases associated with a variety of cellular activities AYR69_10880 SM00421 helix_turn_helix, Lux Regulon AYR69_10880 SM00448 cheY-homologous receiver domain AYR69_10885 SM00387 Histidine kinase-like ATPases AYR69_10885 SM00388 His Kinase A (phosphoacceptor) domain AYR69_10885 SM00448 cheY-homologous receiver domain AYR69_10895 SM00344 helix_turn_helix ASNC type AYR69_10915 SM00384 DNA binding domain with preference for A/T rich regions AYR69_10930 SM01060 AYR69_10930 AYR69_10935 SM01236 AYR69_10935 AYR69_11020 SM00878 Biotin carboxylase C-terminal domain AYR69_11065 SM00882 Coenzyme A transferase AYR69_11070 SM00882 Coenzyme A transferase AYR69_11105 SM00346 helix_turn_helix isocitrate lyase regulation AYR69_11125 SM00346 helix_turn_helix isocitrate lyase regulation AYR69_11165 SM00382 ATPases associated with a variety of cellular activities AYR69_11175 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_11175 SM00866 AYR69_11175 AYR69_11185 SM00346 helix_turn_helix isocitrate lyase regulation AYR69_11230 SM00903 Flavin reductase like domain AYR69_11245 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_11245 SM00895 AYR69_11245 AYR69_11260 SM01060 AYR69_11260 AYR69_11385 SM00342 helix_turn_helix, arabinose operon control protein AYR69_11410 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_11410 SM00895 AYR69_11410 AYR69_11420 SM01130 AYR69_11420 AYR69_11430 SM00422 helix_turn_helix, mercury resistance AYR69_11475 SM00248 ankyrin repeats AYR69_11600 SM00382 ATPases associated with a variety of cellular activities AYR69_11640 SM00796 Allophanate hydrolase subunit 1 AYR69_11640 SM00797 Allophanate hydrolase subunit 2 AYR69_11640 SM00878 Biotin carboxylase C-terminal domain AYR69_11655 SM00829 Enoylreductase AYR69_11685 SM00671 Sel1-like repeats. AYR69_11695 SM00878 Biotin carboxylase C-terminal domain AYR69_11700 SM00796 Allophanate hydrolase subunit 1 AYR69_11700 SM00797 Allophanate hydrolase subunit 2 AYR69_11775 SM00422 helix_turn_helix, mercury resistance AYR69_11805 SM00052 Putative diguanylate phosphodiesterase AYR69_11815 SM00344 helix_turn_helix ASNC type AYR69_11820 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AYR69_11820 SM00534 ATPase domain of DNA mismatch repair MUTS family AYR69_11865 SM00382 ATPases associated with a variety of cellular activities AYR69_11875 SM00382 ATPases associated with a variety of cellular activities AYR69_11895 SM00116 Domain in cystathionine beta-synthase and other proteins. AYR69_11900 SM00840 AYR69_11900 AYR69_11965 SM00357 Cold shock protein domain AYR69_11990 SM00530 Helix-turn-helix XRE-family like proteins AYR69_12050 SM00422 helix_turn_helix, mercury resistance AYR69_12110 SM00382 ATPases associated with a variety of cellular activities AYR69_12110 SM00487 DEAD-like helicases superfamily AYR69_12110 SM00490 helicase superfamily c-terminal domain AYR69_12110 SM00847 Helicase associated domain (HA2) Add an annotation AYR69_12190 SM00981 AYR69_12190 AYR69_12205 SM00382 ATPases associated with a variety of cellular activities AYR69_12205 SM01086 C-terminal, D2-small domain, of ClpB protein AYR69_12225 SM00100 Cyclic nucleotide-monophosphate binding domain AYR69_12225 SM00419 helix_turn_helix, cAMP Regulatory protein AYR69_12255 SM00788 Adenylosuccinate synthetase AYR69_12265 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYR69_12270 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYR69_12455 SM00855 Phosphoglycerate mutase family AYR69_12475 SM00487 DEAD-like helicases superfamily AYR69_12475 SM00490 helicase superfamily c-terminal domain AYR69_12480 SM00357 Cold shock protein domain AYR69_12545 SM00830 Chorismate mutase type II AYR69_12600 SM00387 Histidine kinase-like ATPases AYR69_12600 SM00388 His Kinase A (phosphoacceptor) domain AYR69_12605 SM00448 cheY-homologous receiver domain AYR69_12605 SM00862 Transcriptional regulatory protein, C terminal AYR69_12615 SM00382 ATPases associated with a variety of cellular activities AYR69_12640 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_12660 SM00382 ATPases associated with a variety of cellular activities AYR69_12675 SM00062 Bacterial periplasmic substrate-binding proteins AYR69_12715 SM00479 AYR69_12715 AYR69_12780 SM00382 ATPases associated with a variety of cellular activities AYR69_12830 SM00342 helix_turn_helix, arabinose operon control protein AYR69_12880 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_12900 SM00996 S-adenosyl-L-homocysteine hydrolase AYR69_12900 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AYR69_12915 SM00052 Putative diguanylate phosphodiesterase AYR69_12915 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AYR69_12915 SM00091 PAS domain AYR69_12915 SM00267 diguanylate cyclase AYR69_12920 SM00919 Malic enzyme, NAD binding domain AYR69_12920 SM01274 AYR69_12920 AYR69_12930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYR69_12985 SM01230 AYR69_12985 AYR69_13025 SM00463 Small MutS-related domain AYR69_13035 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYR69_13040 SM01092 CO dehydrogenase flavoprotein C-terminal domain AYR69_13105 SM00382 ATPases associated with a variety of cellular activities AYR69_13110 SM00382 ATPases associated with a variety of cellular activities AYR69_13155 SM00382 ATPases associated with a variety of cellular activities AYR69_13215 SM00829 Enoylreductase AYR69_13220 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AYR69_13355 SM00841 Elongation factor P, C-terminal AYR69_13355 SM01185 AYR69_13355 AYR69_13370 SM00052 Putative diguanylate phosphodiesterase AYR69_13405 SM00257 Lysin motif AYR69_13425 SM00936 Penicillin-binding protein 5, C-terminal domain AYR69_13470 SM00382 ATPases associated with a variety of cellular activities AYR69_13500 SM00344 helix_turn_helix ASNC type AYR69_13555 SM00487 DEAD-like helicases superfamily AYR69_13555 SM00490 helicase superfamily c-terminal domain AYR69_13585 SM00880 AYR69_13585 AYR69_13585 SM01118 AYR69_13585 AYR69_13635 SM01329 AYR69_13635 AYR69_13735 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AYR69_13755 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYR69_13770 SM00487 DEAD-like helicases superfamily AYR69_13770 SM00490 helicase superfamily c-terminal domain AYR69_13780 SM00267 diguanylate cyclase AYR69_13845 SM00358 Double-stranded RNA binding motif AYR69_13845 SM00535 Ribonuclease III family AYR69_13860 SM00838 Elongation factor G C-terminus AYR69_13870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYR69_13920 SM00382 ATPases associated with a variety of cellular activities AYR69_13995 SM01211 AYR69_13995 AYR69_14000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYR69_14005 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYR69_14010 SM00382 ATPases associated with a variety of cellular activities AYR69_14135 SM00849 Metallo-beta-lactamase superfamily AYR69_14140 SM00382 ATPases associated with a variety of cellular activities AYR69_14210 SM00434 DNA Topoisomerase IV AYR69_14215 SM00893 Electron transfer flavoprotein domain AYR69_14220 SM00893 Electron transfer flavoprotein domain AYR69_14255 SM00382 ATPases associated with a variety of cellular activities AYR69_14260 SM00978 AYR69_14260 AYR69_14400 SM00849 Metallo-beta-lactamase superfamily AYR69_14415 SM00883 Chaperonin 10 Kd subunit AYR69_14425 SM00046 Diacylglycerol kinase catalytic domain (presumed) AYR69_14500 SM00382 ATPases associated with a variety of cellular activities AYR69_14510 SM01103 AYR69_14510 AYR69_14525 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AYR69_14530 SM00851 MGS-like domain AYR69_14530 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYR69_14560 SM00854 Bacterial capsule synthesis protein PGA_cap AYR69_14610 SM00881 CoA binding domain AYR69_14630 SM00861 Transketolase, pyrimidine binding domain AYR69_14665 SM00450 Rhodanese Homology Domain AYR69_14770 SM00014 Acid phosphatase homologues AYR69_14805 SM00822 AYR69_14805 AYR69_14850 SM00387 Histidine kinase-like ATPases AYR69_14850 SM00388 His Kinase A (phosphoacceptor) domain AYR69_14855 SM00448 cheY-homologous receiver domain AYR69_14855 SM00862 Transcriptional regulatory protein, C terminal AYR69_14875 SM00563 Phosphate acyltransferases AYR69_14890 SM00244 prohibitin homologues AYR69_14925 SM00829 Enoylreductase AYR69_14930 SM00342 helix_turn_helix, arabinose operon control protein AYR69_14985 SM00316 Ribosomal protein S1-like RNA-binding domain AYR69_15020 SM00845 GatB domain AYR69_15165 SM00073 Histidine Phosphotransfer domain AYR69_15165 SM00260 Two component signalling adaptor domain AYR69_15165 SM00387 Histidine kinase-like ATPases AYR69_15165 SM00448 cheY-homologous receiver domain AYR69_15165 SM01231 AYR69_15165 AYR69_15170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AYR69_15175 SM00260 Two component signalling adaptor domain AYR69_15180 SM00448 cheY-homologous receiver domain AYR69_15185 SM00448 cheY-homologous receiver domain AYR69_15240 SM00671 Sel1-like repeats. AYR69_15265 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AYR69_15265 SM01232 AYR69_15265 AYR69_15285 SM00838 Elongation factor G C-terminus AYR69_15350 SM00564 beta-propeller repeat AYR69_15365 SM00342 helix_turn_helix, arabinose operon control protein AYR69_15415 SM00957 SecA DEAD-like domain AYR69_15415 SM00958 SecA preprotein cross-linking domain AYR69_15425 SM00849 Metallo-beta-lactamase superfamily AYR69_15455 SM00342 helix_turn_helix, arabinose operon control protein AYR69_15515 SM00448 cheY-homologous receiver domain AYR69_15515 SM00862 Transcriptional regulatory protein, C terminal AYR69_15520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYR69_15520 SM00387 Histidine kinase-like ATPases AYR69_15520 SM00388 His Kinase A (phosphoacceptor) domain AYR69_15635 SM00387 Histidine kinase-like ATPases AYR69_15635 SM00388 His Kinase A (phosphoacceptor) domain AYR69_15665 SM01323 AYR69_15665 AYR69_15695 SM00481 DNA polymerase alpha chain like domain AYR69_15720 SM00450 Rhodanese Homology Domain AYR69_15815 SM00267 diguanylate cyclase AYR69_15830 SM00155 Phospholipase D. Active site motifs. AYR69_15835 SM00563 Phosphate acyltransferases AYR69_15865 SM00650 Ribosomal RNA adenine dimethylases AYR69_15900 SM00878 Biotin carboxylase C-terminal domain AYR69_15990 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AYR69_16020 SM00729 Elongator protein 3, MiaB family, Radical SAM AYR69_16070 SM00342 helix_turn_helix, arabinose operon control protein AYR69_16120 SM00316 Ribosomal protein S1-like RNA-binding domain AYR69_16120 SM00955 AYR69_16120 AYR69_16180 SM00662 RNA polymerases D AYR69_16185 SM00363 S4 RNA-binding domain AYR69_16185 SM01390 AYR69_16185 AYR69_16250 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYR69_16255 SM01374 AYR69_16255 AYR69_16275 SM00322 K homology RNA-binding domain AYR69_16290 SM01382 AYR69_16290 AYR69_16290 SM01383 AYR69_16290 AYR69_16310 SM01403 AYR69_16310 AYR69_16360 SM00563 Phosphate acyltransferases AYR69_16375 SM00487 DEAD-like helicases superfamily AYR69_16375 SM00490 helicase superfamily c-terminal domain AYR69_16420 SM00382 ATPases associated with a variety of cellular activities AYR69_16430 SM00487 DEAD-like helicases superfamily AYR69_16430 SM00490 helicase superfamily c-terminal domain AYR69_16440 SM00861 Transketolase, pyrimidine binding domain AYR69_16480 SM00116 Domain in cystathionine beta-synthase and other proteins. AYR69_16590 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYR69_16785 SM00072 Guanylate kinase homologues. AYR69_16790 SM01409 AYR69_16790 AYR69_16795 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYR69_16795 SM00954 Region found in RelA / SpoT proteins AYR69_16875 SM00965 Secretin and TonB N terminus short domain AYR69_16895 SM00842 Cell division protein FtsA AYR69_17060 SM00671 Sel1-like repeats. AYR69_17065 SM00382 ATPases associated with a variety of cellular activities AYR69_17080 SM00947 Carbonic anhydrase AYR69_17085 SM00316 Ribosomal protein S1-like RNA-binding domain AYR69_17085 SM00732 Likely ribonuclease with RNase H fold. AYR69_17090 SM00448 cheY-homologous receiver domain AYR69_17090 SM00862 Transcriptional regulatory protein, C terminal AYR69_17095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYR69_17095 SM00387 Histidine kinase-like ATPases AYR69_17095 SM00388 His Kinase A (phosphoacceptor) domain AYR69_17140 SM00474 3'-5' exonuclease AYR69_17150 SM00530 Helix-turn-helix XRE-family like proteins AYR69_17165 SM00357 Cold shock protein domain AYR69_17185 SM00342 helix_turn_helix, arabinose operon control protein AYR69_17205 SM00477 DNA/RNA non-specific endonuclease AYR69_17205 SM00892 DNA/RNA non-specific endonuclease AYR69_17275 SM00342 helix_turn_helix, arabinose operon control protein AYR69_17355 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_17365 SM00530 Helix-turn-helix XRE-family like proteins AYR69_17410 SM00829 Enoylreductase AYR69_17425 SM00267 diguanylate cyclase AYR69_17455 SM00387 Histidine kinase-like ATPases AYR69_17455 SM00388 His Kinase A (phosphoacceptor) domain AYR69_17455 SM00448 cheY-homologous receiver domain AYR69_17465 SM00421 helix_turn_helix, Lux Regulon AYR69_17465 SM00448 cheY-homologous receiver domain AYR69_17480 SM00344 helix_turn_helix ASNC type AYR69_17520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYR69_17525 SM00937 AYR69_17525 AYR69_17550 SM00116 Domain in cystathionine beta-synthase and other proteins. AYR69_17550 SM01240 AYR69_17550 AYR69_17560 SM00849 Metallo-beta-lactamase superfamily AYR69_17605 SM00864 Tubulin/FtsZ family, GTPase domain AYR69_17605 SM00865 Tubulin/FtsZ family, C-terminal domain AYR69_17610 SM00842 Cell division protein FtsA AYR69_17680 SM00267 diguanylate cyclase AYR69_17750 SM00387 Histidine kinase-like ATPases AYR69_17750 SM00433 TopoisomeraseII AYR69_17855 SM00448 cheY-homologous receiver domain AYR69_17855 SM00862 Transcriptional regulatory protein, C terminal AYR69_17860 SM00387 Histidine kinase-like ATPases AYR69_17860 SM00388 His Kinase A (phosphoacceptor) domain AYR69_17875 SM00450 Rhodanese Homology Domain AYR69_17955 SM00382 ATPases associated with a variety of cellular activities AYR69_18030 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_18030 SM00866 AYR69_18030 AYR69_18040 SM00833 Cobalamin synthesis protein cobW C-terminal domain AYR69_18070 SM00346 helix_turn_helix isocitrate lyase regulation AYR69_18100 SM01130 AYR69_18100 AYR69_18125 SM00382 ATPases associated with a variety of cellular activities AYR69_18155 SM00478 endonuclease III AYR69_18155 SM00525 AYR69_18155 AYR69_18175 SM00829 Enoylreductase AYR69_18180 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYR69_18220 SM00271 DnaJ molecular chaperone homology domain AYR69_18360 SM00849 Metallo-beta-lactamase superfamily AYR69_18380 SM00235 Zinc-dependent metalloprotease AYR69_18385 SM00235 Zinc-dependent metalloprotease AYR69_18405 SM01001 AIR carboxylase AYR69_18430 SM00014 Acid phosphatase homologues AYR69_18500 SM01234 AYR69_18500