AYR68_00005 PF00308 Bacterial dnaA protein AYR68_00005 PF08299 Bacterial dnaA protein helix-turn-helix AYR68_00005 PF11638 DnaA N-terminal domain AYR68_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AYR68_00010 PF02767 DNA polymerase III beta subunit, central domain AYR68_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AYR68_00015 PF02463 RecF/RecN/SMC N terminal domain AYR68_00020 PF00204 DNA gyrase B AYR68_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AYR68_00020 PF01751 Toprim domain AYR68_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_00025 PF07361 Cytochrome b562 AYR68_00030 PF09335 AYR68_00030 AYR68_00035 PF00005 ABC transporter AYR68_00035 PF12848 ABC transporter AYR68_00055 PF01521 Iron-sulphur cluster biosynthesis AYR68_00060 PF00561 alpha/beta hydrolase fold AYR68_00065 PF03702 Uncharacterised protein family (UPF0075) AYR68_00070 PF00579 tRNA synthetases class I (W and Y) AYR68_00100 PF00043 Glutathione S-transferase, C-terminal domain AYR68_00100 PF13417 Glutathione S-transferase, N-terminal domain AYR68_00110 PF00209 Sodium:neurotransmitter symporter family AYR68_00115 PF16951 AYR68_00115 AYR68_00120 PF01029 NusB family AYR68_00120 PF01189 NOL1/NOP2/sun family AYR68_00120 PF17125 AYR68_00120 AYR68_00125 PF00551 Formyl transferase AYR68_00125 PF02911 Formyl transferase, C-terminal domain AYR68_00130 PF00920 Dehydratase family AYR68_00140 PF01925 AYR68_00140 AYR68_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_00145 PF03466 LysR substrate binding domain AYR68_00150 PF00860 Permease family AYR68_00155 PF00311 Phosphoenolpyruvate carboxylase AYR68_00160 PF00440 Bacterial regulatory proteins, tetR family AYR68_00160 PF14246 AefR-like transcriptional repressor, C-terminal region AYR68_00165 PF16576 AYR68_00165 AYR68_00170 PF00873 AcrB/AcrD/AcrF family AYR68_00180 PF00226 DnaJ domain AYR68_00180 PF00684 DnaJ central domain AYR68_00180 PF01556 DnaJ C terminal domain AYR68_00190 PF01113 Dihydrodipicolinate reductase, N-terminus AYR68_00190 PF05173 Dihydrodipicolinate reductase, C-terminus AYR68_00195 PF01852 START domain AYR68_00200 PF07690 Major Facilitator Superfamily AYR68_00205 PF00248 Aldo/keto reductase family AYR68_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_00210 PF03466 LysR substrate binding domain AYR68_00220 PF00155 Aminotransferase class I and II AYR68_00220 PF00392 Bacterial regulatory proteins, gntR family AYR68_00225 PF00107 Zinc-binding dehydrogenase AYR68_00225 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_00230 PF03352 Methyladenine glycosylase AYR68_00240 PF01551 Peptidase family M23 AYR68_00245 PF00633 Helix-hairpin-helix motif AYR68_00245 PF00730 HhH-GPD superfamily base excision DNA repair protein AYR68_00245 PF14815 NUDIX domain AYR68_00250 PF01230 HIT domain AYR68_00255 PF01738 Dienelactone hydrolase family AYR68_00260 PF01609 Transposase DDE domain AYR68_00265 PF01609 Transposase DDE domain AYR68_00270 PF07043 AYR68_00270 AYR68_00275 PF03692 AYR68_00275 AYR68_00280 PF07995 Glucose / Sorbosone dehydrogenase AYR68_00285 PF00004 ATPase family associated with various cellular activities (AAA) AYR68_00285 PF12002 MgsA AAA+ ATPase C terminal AYR68_00285 PF16193 AYR68_00285 AYR68_00290 PF01226 Formate/nitrite transporter AYR68_00300 PF01259 SAICAR synthetase AYR68_00310 PF00701 Dihydrodipicolinate synthetase family AYR68_00315 PF00857 Isochorismatase family AYR68_00320 PF01758 Sodium Bile acid symporter family AYR68_00325 PF01554 MatE AYR68_00330 PF04463 AYR68_00330 AYR68_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR68_00335 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AYR68_00340 PF01614 Bacterial transcriptional regulator AYR68_00340 PF09339 IclR helix-turn-helix domain AYR68_00345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR68_00350 PF02798 Glutathione S-transferase, N-terminal domain AYR68_00350 PF14497 Glutathione S-transferase, C-terminal domain AYR68_00355 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYR68_00355 PF09298 Fumarylacetoacetase N-terminal AYR68_00360 PF00324 Amino acid permease AYR68_00365 PF08291 Peptidase M15 AYR68_00370 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYR68_00370 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYR68_00375 PF01757 AYR68_00375 AYR68_00380 PF00392 Bacterial regulatory proteins, gntR family AYR68_00380 PF07702 UTRA domain AYR68_00385 PF05962 HutD AYR68_00390 PF01175 Urocanase AYR68_00390 PF17391 AYR68_00390 AYR68_00390 PF17392 AYR68_00390 AYR68_00395 PF00221 Aromatic amino acid lyase AYR68_00400 PF00324 Amino acid permease AYR68_00405 PF01979 Amidohydrolase family AYR68_00410 PF00491 Arginase family AYR68_00415 PF05960 Bacterial protein of unknown function (DUF885) AYR68_00420 PF01609 Transposase DDE domain AYR68_00425 PF01609 Transposase DDE domain AYR68_00445 PF00582 Universal stress protein family AYR68_00450 PF00916 AYR68_00450 AYR68_00450 PF01740 STAS domain AYR68_00460 PF07690 Major Facilitator Superfamily AYR68_00465 PF00440 Bacterial regulatory proteins, tetR family AYR68_00465 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AYR68_00475 PF04986 AYR68_00475 AYR68_00475 PF14319 AYR68_00475 AYR68_00485 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AYR68_00490 PF01636 Phosphotransferase enzyme family AYR68_00505 PF04380 AYR68_00505 AYR68_00510 PF00543 Nitrogen regulatory protein P-II AYR68_00515 PF00909 Ammonium Transporter Family AYR68_00520 PF03477 ATP cone domain AYR68_00525 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYR68_00525 PF01872 RibD C-terminal domain AYR68_00530 PF02086 D12 class N6 adenine-specific DNA methyltransferase AYR68_00535 PF00677 Lumazine binding domain AYR68_00550 PF04364 DNA polymerase III chi subunit, HolC AYR68_00555 PF00883 Cytosol aminopeptidase family, catalytic domain AYR68_00555 PF02789 Cytosol aminopeptidase family, N-terminal domain AYR68_00560 PF03739 AYR68_00560 AYR68_00565 PF03739 AYR68_00565 AYR68_00570 PF01676 Metalloenzyme superfamily AYR68_00570 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYR68_00575 PF03572 Peptidase family S41 AYR68_00580 PF00072 Response regulator receiver domain AYR68_00580 PF00158 Sigma-54 interaction domain AYR68_00580 PF02954 Bacterial regulatory protein, Fis family AYR68_00585 PF00512 His Kinase A (phospho-acceptor) domain AYR68_00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_00590 PF00072 Response regulator receiver domain AYR68_00590 PF00196 Bacterial regulatory proteins, luxR family AYR68_00595 PF00768 D-alanyl-D-alanine carboxypeptidase AYR68_00600 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_00605 PF00742 Homoserine dehydrogenase AYR68_00605 PF01842 ACT domain AYR68_00605 PF03447 Homoserine dehydrogenase, NAD binding domain AYR68_00610 PF10411 Disulfide bond isomerase protein N-terminus AYR68_00610 PF13098 Thioredoxin-like domain AYR68_00615 PF00589 Phage integrase family AYR68_00615 PF02899 Phage integrase, N-terminal SAM-like domain AYR68_00620 PF04023 FeoA domain AYR68_00625 PF02421 Ferrous iron transport protein B AYR68_00625 PF07664 AYR68_00625 AYR68_00625 PF07670 Nucleoside recognition AYR68_00635 PF02875 Mur ligase family, glutamate ligase domain AYR68_00635 PF08245 Mur ligase middle domain AYR68_00640 PF01098 AYR68_00640 AYR68_00645 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR68_00650 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYR68_00655 PF00149 Calcineurin-like phosphoesterase AYR68_00660 PF00293 NUDIX domain AYR68_00665 PF01964 ThiC family AYR68_00665 PF13667 ThiC-associated domain AYR68_00675 PF00440 Bacterial regulatory proteins, tetR family AYR68_00680 PF00892 EamA-like transporter family AYR68_00685 PF02321 Outer membrane efflux protein AYR68_00690 PF01895 PhoU domain AYR68_00695 PF04362 Bacterial Fe(2+) trafficking AYR68_00700 PF00206 Lyase AYR68_00700 PF14698 Argininosuccinate lyase C-terminal AYR68_00705 PF06580 AYR68_00705 AYR68_00710 PF00072 Response regulator receiver domain AYR68_00710 PF04397 LytTr DNA-binding domain AYR68_00715 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AYR68_00715 PF03900 Porphobilinogen deaminase, C-terminal domain AYR68_00720 PF02602 Uroporphyrinogen-III synthase HemD AYR68_00735 PF13279 Thioesterase-like superfamily AYR68_00740 PF00816 H-NS histone family AYR68_00745 PF01203 AYR68_00745 AYR68_00750 PF11356 Type IV pilus biogenesis AYR68_00755 PF00263 AYR68_00755 AYR68_00755 PF03958 Bacterial type II/III secretion system short domain AYR68_00760 PF00498 FHA domain AYR68_00765 PF13419 Haloacid dehalogenase-like hydrolase AYR68_00770 PF00425 chorismate binding enzyme AYR68_00770 PF04715 Anthranilate synthase component I, N terminal region AYR68_00795 PF00009 Elongation factor Tu GTP binding domain AYR68_00795 PF03143 Elongation factor Tu C-terminal domain AYR68_00795 PF03144 Elongation factor Tu domain 2 AYR68_00805 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AYR68_00810 PF02357 Transcription termination factor nusG AYR68_00815 PF00298 Ribosomal protein L11, RNA binding domain AYR68_00815 PF03946 Ribosomal protein L11, N-terminal domain AYR68_00820 PF00687 Ribosomal protein L1p/L10e family AYR68_00825 PF00466 Ribosomal protein L10 AYR68_00830 PF00542 Ribosomal protein L7/L12 C-terminal domain AYR68_00830 PF16320 AYR68_00830 AYR68_00835 PF00562 RNA polymerase Rpb2, domain 6 AYR68_00835 PF04560 RNA polymerase Rpb2, domain 7 AYR68_00835 PF04561 RNA polymerase Rpb2, domain 2 AYR68_00835 PF04563 RNA polymerase beta subunit AYR68_00835 PF04565 RNA polymerase Rpb2, domain 3 AYR68_00835 PF10385 RNA polymerase beta subunit external 1 domain AYR68_00840 PF00623 RNA polymerase Rpb1, domain 2 AYR68_00840 PF04983 RNA polymerase Rpb1, domain 3 AYR68_00840 PF04997 RNA polymerase Rpb1, domain 1 AYR68_00840 PF04998 RNA polymerase Rpb1, domain 5 AYR68_00840 PF05000 RNA polymerase Rpb1, domain 4 AYR68_00850 PF13441 AYR68_00850 AYR68_00855 PF14539 Domain of unknown function (DUF4442) AYR68_00860 PF00561 alpha/beta hydrolase fold AYR68_00865 PF03553 AYR68_00865 AYR68_00865 PF13726 AYR68_00865 AYR68_00870 PF03922 OmpW family AYR68_00875 PF07007 Protein of unknown function (DUF1311) AYR68_00880 PF00183 Hsp90 protein AYR68_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_00895 PF01323 DSBA-like thioredoxin domain AYR68_00905 PF13411 MerR HTH family regulatory protein AYR68_00910 PF06821 Serine hydrolase AYR68_00925 PF00108 Thiolase, N-terminal domain AYR68_00925 PF02803 Thiolase, C-terminal domain AYR68_00930 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_00930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR68_00930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR68_00935 PF05118 Aspartyl/Asparaginyl beta-hydroxylase AYR68_00950 PF01541 GIY-YIG catalytic domain AYR68_00950 PF02151 UvrB/uvrC motif AYR68_00950 PF08459 UvrC Helix-hairpin-helix N-terminal AYR68_00950 PF14520 Helix-hairpin-helix domain AYR68_00955 PF13622 Thioesterase-like superfamily AYR68_00960 PF01066 CDP-alcohol phosphatidyltransferase AYR68_00965 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR68_00965 PF12833 Helix-turn-helix domain AYR68_00970 PF13532 2OG-Fe(II) oxygenase superfamily AYR68_00975 PF01614 Bacterial transcriptional regulator AYR68_00980 PF04632 AYR68_00980 AYR68_00985 PF07869 AYR68_00985 AYR68_00990 PF13437 HlyD family secretion protein AYR68_00990 PF13533 Biotin-lipoyl like AYR68_00995 PF03652 Uncharacterised protein family (UPF0081) AYR68_01000 PF02622 Uncharacterized ACR, COG1678 AYR68_01005 PF02463 RecF/RecN/SMC N terminal domain AYR68_01015 PF06865 Protein of unknown function (DUF1255) AYR68_01020 PF00588 SpoU rRNA Methylase family AYR68_01020 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYR68_01025 PF00892 EamA-like transporter family AYR68_01030 PF01121 Dephospho-CoA kinase AYR68_01035 PF01478 Type IV leader peptidase family AYR68_01035 PF06750 AYR68_01035 AYR68_01040 PF00482 Type II secretion system (T2SS), protein F AYR68_01045 PF00437 Type II/IV secretion system protein AYR68_01045 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AYR68_01050 PF00121 Triosephosphate isomerase AYR68_01055 PF03840 Preprotein translocase SecG subunit AYR68_01075 PF02576 Uncharacterised BCR, YhbC family COG0779 AYR68_01075 PF17384 AYR68_01075 AYR68_01080 PF08529 NusA N-terminal domain AYR68_01080 PF13184 NusA-like KH domain AYR68_01080 PF14520 Helix-hairpin-helix domain AYR68_01085 PF00009 Elongation factor Tu GTP binding domain AYR68_01085 PF04760 Translation initiation factor IF-2, N-terminal region AYR68_01085 PF08364 AYR68_01085 AYR68_01085 PF11987 Translation-initiation factor 2 AYR68_01090 PF02033 Ribosome-binding factor A AYR68_01095 PF03334 AYR68_01095 AYR68_01100 PF04066 AYR68_01100 AYR68_01105 PF01899 AYR68_01105 AYR68_01110 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AYR68_01115 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYR68_01120 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AYR68_01120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYR68_01120 PF04039 AYR68_01120 AYR68_01120 PF13244 AYR68_01120 AYR68_01125 PF13476 AAA domain AYR68_01130 PF13245 Part of AAA domain AYR68_01130 PF13361 UvrD-like helicase C-terminal domain AYR68_01135 PF01502 Phosphoribosyl-AMP cyclohydrolase AYR68_01135 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AYR68_01140 PF01494 FAD binding domain AYR68_01145 PF03109 AYR68_01145 AYR68_01155 PF01209 ubiE/COQ5 methyltransferase family AYR68_01165 PF03976 Polyphosphate kinase 2 (PPK2) AYR68_01175 PF04257 Exodeoxyribonuclease V, gamma subunit AYR68_01180 PF00580 UvrD/REP helicase N-terminal domain AYR68_01180 PF12705 PD-(D/E)XK nuclease superfamily AYR68_01180 PF13361 UvrD-like helicase C-terminal domain AYR68_01185 PF13538 UvrD-like helicase C-terminal domain AYR68_01185 PF13604 AAA domain AYR68_01190 PF00144 Beta-lactamase AYR68_01195 PF00312 Ribosomal protein S15 AYR68_01200 PF00013 KH domain AYR68_01200 PF00575 S1 RNA binding domain AYR68_01200 PF01138 3' exoribonuclease family, domain 1 AYR68_01200 PF03725 3' exoribonuclease family, domain 2 AYR68_01200 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AYR68_01205 PF01544 CorA-like Mg2+ transporter protein AYR68_01210 PF13591 MerR HTH family regulatory protein AYR68_01215 PF00226 DnaJ domain AYR68_01215 PF01556 DnaJ C terminal domain AYR68_01220 PF01810 AYR68_01220 AYR68_01225 PF01430 Hsp33 protein AYR68_01230 PF00999 Sodium/hydrogen exchanger family AYR68_01230 PF02254 TrkA-N domain AYR68_01235 PF00271 Helicase conserved C-terminal domain AYR68_01235 PF04851 Type III restriction enzyme, res subunit AYR68_01240 PF00482 Type II secretion system (T2SS), protein F AYR68_01245 PF07963 Prokaryotic N-terminal methylation motif AYR68_01245 PF08334 Type II secretion system (T2SS), protein G AYR68_01255 PF01588 Putative tRNA binding domain AYR68_01260 PF00795 Carbon-nitrogen hydrolase AYR68_01265 PF00571 CBS domain AYR68_01265 PF03471 Transporter associated domain AYR68_01270 PF01206 Sulfurtransferase TusA AYR68_01275 PF01946 Thi4 family AYR68_01275 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AYR68_01280 PF06938 Protein of unknown function (DUF1285) AYR68_01285 PF01177 Asp/Glu/Hydantoin racemase AYR68_01290 PF13271 AYR68_01290 AYR68_01295 PF00762 Ferrochelatase AYR68_01300 PF00753 Metallo-beta-lactamase superfamily AYR68_01305 PF03884 Domain of unknown function (DUF329) AYR68_01310 PF02390 Putative methyltransferase AYR68_01315 PF03486 HI0933-like protein AYR68_01320 PF04828 Glutathione-dependent formaldehyde-activating enzyme AYR68_01325 PF02537 AYR68_01325 AYR68_01335 PF01527 Transposase AYR68_01340 PF05717 AYR68_01340 AYR68_01345 PF03050 AYR68_01345 AYR68_01345 PF13005 AYR68_01345 AYR68_01345 PF13007 AYR68_01345 AYR68_01345 PF13817 AYR68_01345 AYR68_01350 PF05275 AYR68_01350 AYR68_01365 PF01197 Ribosomal protein L31 AYR68_01370 PF03109 AYR68_01370 AYR68_01375 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_01375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_01375 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR68_01380 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR68_01385 PF01554 MatE AYR68_01390 PF04657 AYR68_01390 AYR68_01395 PF04055 Radical SAM superfamily AYR68_01395 PF06969 HemN C-terminal domain AYR68_01400 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_01405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_01405 PF03466 LysR substrate binding domain AYR68_01420 PF00501 AMP-binding enzyme AYR68_01420 PF13193 AMP-binding enzyme C-terminal domain AYR68_01425 PF00575 S1 RNA binding domain AYR68_01425 PF10150 Ribonuclease E/G family AYR68_01430 PF00849 RNA pseudouridylate synthase AYR68_01430 PF01479 S4 domain AYR68_01435 PF13419 Haloacid dehalogenase-like hydrolase AYR68_01440 PF08279 HTH domain AYR68_01440 PF13280 AYR68_01440 AYR68_01445 PF02798 Glutathione S-transferase, N-terminal domain AYR68_01445 PF14497 Glutathione S-transferase, C-terminal domain AYR68_01450 PF07077 AYR68_01450 AYR68_01455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_01455 PF03466 LysR substrate binding domain AYR68_01460 PF12706 Beta-lactamase superfamily domain AYR68_01465 PF00141 Peroxidase AYR68_01470 PF00391 PEP-utilising enzyme, mobile domain AYR68_01470 PF02896 PEP-utilising enzyme, TIM barrel domain AYR68_01470 PF05524 PEP-utilising enzyme, N-terminal AYR68_01470 PF13185 GAF domain AYR68_01475 PF00293 NUDIX domain AYR68_01480 PF12710 haloacid dehalogenase-like hydrolase AYR68_01495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_01495 PF03466 LysR substrate binding domain AYR68_01500 PF09834 AYR68_01500 AYR68_01505 PF00330 Aconitase family (aconitate hydratase) AYR68_01510 PF00694 Aconitase C-terminal domain AYR68_01520 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR68_01530 PF07007 Protein of unknown function (DUF1311) AYR68_01535 PF01176 Translation initiation factor 1A / IF-1 AYR68_01540 PF12625 AYR68_01540 AYR68_01540 PF12833 Helix-turn-helix domain AYR68_01545 PF01416 tRNA pseudouridine synthase AYR68_01550 PF00710 Asparaginase AYR68_01565 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYR68_01565 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYR68_01570 PF03372 Endonuclease/Exonuclease/phosphatase family AYR68_01575 PF00375 Sodium:dicarboxylate symporter family AYR68_01580 PF00534 Glycosyl transferases group 1 AYR68_01580 PF13439 Glycosyltransferase Family 4 AYR68_01585 PF03279 AYR68_01585 AYR68_01590 PF01810 AYR68_01590 AYR68_01595 PF00005 ABC transporter AYR68_01595 PF12848 ABC transporter AYR68_01595 PF16326 AYR68_01595 AYR68_01600 PF04102 SlyX AYR68_01605 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_01605 PF13602 Zinc-binding dehydrogenase AYR68_01610 PF01638 HxlR-like helix-turn-helix AYR68_01620 PF01131 DNA topoisomerase AYR68_01620 PF01396 AYR68_01620 AYR68_01620 PF01751 Toprim domain AYR68_01620 PF08272 Topoisomerase I zinc-ribbon-like AYR68_01630 PF03729 AYR68_01630 AYR68_01635 PF00580 UvrD/REP helicase N-terminal domain AYR68_01635 PF13361 UvrD-like helicase C-terminal domain AYR68_01640 PF00076 RNA recognition motif AYR68_01660 PF00999 Sodium/hydrogen exchanger family AYR68_01660 PF02254 TrkA-N domain AYR68_01665 PF00471 Ribosomal protein L33 AYR68_01670 PF00830 Ribosomal L28 family AYR68_01675 PF00171 Aldehyde dehydrogenase family AYR68_01680 PF00440 Bacterial regulatory proteins, tetR family AYR68_01680 PF13972 Bacterial transcriptional repressor AYR68_01685 PF00551 Formyl transferase AYR68_01685 PF01842 ACT domain AYR68_01690 PF03544 Gram-negative bacterial TonB protein C-terminal AYR68_01695 PF01618 AYR68_01695 AYR68_01700 PF02472 Biopolymer transport protein ExbD/TolR AYR68_01705 PF01625 Peptide methionine sulfoxide reductase AYR68_01710 PF13387 AYR68_01710 AYR68_01715 PF00186 Dihydrofolate reductase AYR68_01720 PF00303 Thymidylate synthase AYR68_01735 PF01790 AYR68_01735 AYR68_01740 PF05742 AYR68_01740 AYR68_01745 PF05787 Bacterial protein of unknown function (DUF839) AYR68_01750 PF05787 Bacterial protein of unknown function (DUF839) AYR68_01755 PF00902 Sec-independent protein translocase protein (TatC) AYR68_01760 PF02416 mttA/Hcf106 family AYR68_01765 PF02416 mttA/Hcf106 family AYR68_01775 PF01725 Ham1 family AYR68_01780 PF08238 Sel1 repeat AYR68_01785 PF07021 Methionine biosynthesis protein MetW AYR68_01790 PF00561 alpha/beta hydrolase fold AYR68_01795 PF00682 HMGL-like AYR68_01795 PF08502 LeuA allosteric (dimerisation) domain AYR68_01800 PF13640 2OG-Fe(II) oxygenase superfamily AYR68_01805 PF00593 TonB dependent receptor AYR68_01805 PF07715 TonB-dependent Receptor Plug Domain AYR68_01810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR68_01810 PF05697 Bacterial trigger factor protein (TF) AYR68_01810 PF05698 Bacterial trigger factor protein (TF) C-terminus AYR68_01815 PF00574 Clp protease AYR68_01820 PF06689 ClpX C4-type zinc finger AYR68_01820 PF07724 AAA domain (Cdc48 subfamily) AYR68_01820 PF10431 C-terminal, D2-small domain, of ClpB protein AYR68_01825 PF11008 AYR68_01825 AYR68_01830 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) AYR68_01835 PF05681 AYR68_01835 AYR68_01835 PF05683 Fumarase C-terminus AYR68_01840 PF01515 Phosphate acetyl/butaryl transferase AYR68_01840 PF07085 DRTGG domain AYR68_01840 PF13500 AAA domain AYR68_01845 PF00871 Acetokinase family AYR68_01850 PF00920 Dehydratase family AYR68_01855 PF01081 KDPG and KHG aldolase AYR68_01860 PF02447 AYR68_01860 AYR68_01865 PF01202 Shikimate kinase AYR68_01870 PF00171 Aldehyde dehydrogenase family AYR68_01875 PF00171 Aldehyde dehydrogenase family AYR68_01880 PF00561 alpha/beta hydrolase fold AYR68_01885 PF04072 Leucine carboxyl methyltransferase AYR68_01890 PF00933 Glycosyl hydrolase family 3 N terminal domain AYR68_01895 PF00595 PDZ domain (Also known as DHR or GLGF) AYR68_01895 PF03572 Peptidase family S41 AYR68_01895 PF11818 AYR68_01895 AYR68_01900 PF00534 Glycosyl transferases group 1 AYR68_01900 PF13439 Glycosyltransferase Family 4 AYR68_01905 PF01569 PAP2 superfamily AYR68_01910 PF04384 Iron-sulphur cluster assembly AYR68_01915 PF00334 Nucleoside diphosphate kinase AYR68_01920 PF04055 Radical SAM superfamily AYR68_01925 PF13432 Tetratricopeptide repeat AYR68_01930 PF13413 Helix-turn-helix domain AYR68_01930 PF13464 AYR68_01930 AYR68_01935 PF04551 GcpE protein AYR68_01940 PF03129 Anticodon binding domain AYR68_01940 PF13393 Histidyl-tRNA synthetase AYR68_01945 PF09976 Tetratricopeptide repeat AYR68_01950 PF13360 PQQ-like domain AYR68_01955 PF01926 50S ribosome-binding GTPase AYR68_01955 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYR68_01960 PF13723 AYR68_01960 AYR68_01965 PF01553 Acyltransferase AYR68_01970 PF00550 Phosphopantetheine attachment site AYR68_01975 PF00550 Phosphopantetheine attachment site AYR68_01980 PF04279 AYR68_01980 AYR68_01985 PF00501 AMP-binding enzyme AYR68_01985 PF13193 AMP-binding enzyme C-terminal domain AYR68_01990 PF00535 Glycosyl transferase family 2 AYR68_01995 PF03279 AYR68_01995 AYR68_02000 PF00221 Aromatic amino acid lyase AYR68_02005 PF13279 Thioesterase-like superfamily AYR68_02010 PF03548 Outer membrane lipoprotein carrier protein LolA AYR68_02020 PF01494 FAD binding domain AYR68_02025 PF11659 AYR68_02025 AYR68_02030 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR68_02030 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR68_02040 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_02045 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR68_02045 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR68_02055 PF01648 4'-phosphopantetheinyl transferase superfamily AYR68_02060 PF02556 Preprotein translocase subunit SecB AYR68_02065 PF00462 Glutaredoxin AYR68_02070 PF00581 Rhodanese-like domain AYR68_02075 PF03193 Protein of unknown function, DUF258 AYR68_02080 PF00929 Exonuclease AYR68_02085 PF12811 AYR68_02085 AYR68_02090 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_02095 PF02321 Outer membrane efflux protein AYR68_02100 PF00005 ABC transporter AYR68_02100 PF02687 AYR68_02100 AYR68_02100 PF12704 MacB-like periplasmic core domain AYR68_02105 PF16576 AYR68_02105 AYR68_02110 PF06144 DNA polymerase III, delta subunit AYR68_02120 PF00133 tRNA synthetases class I (I, L, M and V) AYR68_02120 PF08264 Anticodon-binding domain of tRNA AYR68_02120 PF09334 tRNA synthetases class I (M) AYR68_02120 PF13603 Leucyl-tRNA synthetase, Domain 2 AYR68_02125 PF13511 AYR68_02125 AYR68_02130 PF00205 Thiamine pyrophosphate enzyme, central domain AYR68_02130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYR68_02130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYR68_02135 PF10369 Small subunit of acetolactate synthase AYR68_02135 PF13710 ACT domain AYR68_02140 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AYR68_02140 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AYR68_02145 PF00563 EAL domain AYR68_02145 PF00990 GGDEF domain AYR68_02150 PF00440 Bacterial regulatory proteins, tetR family AYR68_02155 PF00440 Bacterial regulatory proteins, tetR family AYR68_02165 PF00009 Elongation factor Tu GTP binding domain AYR68_02165 PF16658 AYR68_02165 AYR68_02175 PF11738 Protein of unknown function (DUF3298) AYR68_02180 PF01026 TatD related DNase AYR68_02185 PF00330 Aconitase family (aconitate hydratase) AYR68_02185 PF00694 Aconitase C-terminal domain AYR68_02190 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AYR68_02195 PF00899 ThiF family AYR68_02200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_02200 PF03466 LysR substrate binding domain AYR68_02210 PF01207 Dihydrouridine synthase (Dus) AYR68_02215 PF07690 Major Facilitator Superfamily AYR68_02220 PF01042 Endoribonuclease L-PSP AYR68_02225 PF00892 EamA-like transporter family AYR68_02230 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AYR68_02230 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AYR68_02235 PF12769 Domain of unknown function (DUF3814) AYR68_02240 PF02233 NAD(P) transhydrogenase beta subunit AYR68_02245 PF00106 short chain dehydrogenase AYR68_02250 PF02410 Oligomerisation domain AYR68_02255 PF01261 Xylose isomerase-like TIM barrel AYR68_02260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR68_02260 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR68_02265 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_02270 PF00072 Response regulator receiver domain AYR68_02270 PF00512 His Kinase A (phospho-acceptor) domain AYR68_02270 PF01627 Hpt domain AYR68_02270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_02275 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_02280 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB AYR68_02285 PF05958 tRNA (Uracil-5-)-methyltransferase AYR68_02290 PF02824 TGS domain AYR68_02290 PF04607 Region found in RelA / SpoT proteins AYR68_02290 PF13291 ACT domain AYR68_02290 PF13328 HD domain AYR68_02295 PF00106 short chain dehydrogenase AYR68_02300 PF03819 MazG nucleotide pyrophosphohydrolase domain AYR68_02305 PF12836 Helix-hairpin-helix motif AYR68_02310 PF01743 Poly A polymerase head domain AYR68_02310 PF12626 Polymerase A arginine-rich C-terminus AYR68_02310 PF12627 Probable RNA and SrmB- binding site of polymerase A AYR68_02315 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYR68_02320 PF02548 Ketopantoate hydroxymethyltransferase AYR68_02325 PF02569 Pantoate-beta-alanine ligase AYR68_02330 PF03668 AYR68_02330 AYR68_02335 PF00381 PTS HPr component phosphorylation site AYR68_02340 PF04751 Protein of unknown function (DUF615) AYR68_02345 PF00501 AMP-binding enzyme AYR68_02345 PF13193 AMP-binding enzyme C-terminal domain AYR68_02350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR68_02350 PF02824 TGS domain AYR68_02350 PF03129 Anticodon binding domain AYR68_02350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYR68_02355 PF00707 Translation initiation factor IF-3, C-terminal domain AYR68_02355 PF05198 Translation initiation factor IF-3, N-terminal domain AYR68_02360 PF00043 Glutathione S-transferase, C-terminal domain AYR68_02360 PF02798 Glutathione S-transferase, N-terminal domain AYR68_02365 PF09335 AYR68_02365 AYR68_02370 PF05977 Transmembrane secretion effector AYR68_02375 PF01632 Ribosomal protein L35 AYR68_02380 PF00453 Ribosomal protein L20 AYR68_02385 PF08719 Domain of unknown function (DUF1768) AYR68_02390 PF00583 Acetyltransferase (GNAT) family AYR68_02400 PF01409 tRNA synthetases class II core domain (F) AYR68_02400 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYR68_02405 PF01588 Putative tRNA binding domain AYR68_02405 PF03147 Ferredoxin-fold anticodon binding domain AYR68_02405 PF03483 B3/4 domain AYR68_02405 PF03484 tRNA synthetase B5 domain AYR68_02410 PF00216 Bacterial DNA-binding protein AYR68_02420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR68_02420 PF07497 Rho termination factor, RNA-binding domain AYR68_02420 PF07498 Rho termination factor, N-terminal domain AYR68_02425 PF00085 Thioredoxin AYR68_02430 PF01966 HD domain AYR68_02430 PF02541 Ppx/GppA phosphatase family AYR68_02435 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AYR68_02440 PF01171 PP-loop family AYR68_02440 PF09179 TilS substrate binding domain AYR68_02440 PF11734 TilS substrate C-terminal domain AYR68_02445 PF03807 NADP oxidoreductase coenzyme F420-dependent AYR68_02445 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYR68_02455 PF01609 Transposase DDE domain AYR68_02460 PF01609 Transposase DDE domain AYR68_02470 PF00476 DNA polymerase family A AYR68_02470 PF01367 5'-3' exonuclease, C-terminal SAM fold AYR68_02470 PF01612 3'-5' exonuclease AYR68_02470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYR68_02475 PF10101 AYR68_02475 AYR68_02480 PF00924 Mechanosensitive ion channel AYR68_02490 PF00437 Type II/IV secretion system protein AYR68_02495 PF02566 OsmC-like protein AYR68_02500 PF01047 MarR family AYR68_02505 PF16309 AYR68_02505 AYR68_02510 PF00795 Carbon-nitrogen hydrolase AYR68_02515 PF01740 STAS domain AYR68_02520 PF07228 Stage II sporulation protein E (SpoIIE) AYR68_02525 PF04333 AYR68_02525 AYR68_02555 PF00309 AYR68_02555 AYR68_02555 PF04552 Sigma-54, DNA binding domain AYR68_02555 PF04963 Sigma-54 factor, core binding domain AYR68_02560 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYR68_02565 PF01722 BolA-like protein AYR68_02570 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYR68_02575 PF01634 ATP phosphoribosyltransferase AYR68_02580 PF00815 Histidinol dehydrogenase AYR68_02585 PF00155 Aminotransferase class I and II AYR68_02590 PF00425 chorismate binding enzyme AYR68_02590 PF04715 Anthranilate synthase component I, N terminal region AYR68_02605 PF03412 Peptidase C39 family AYR68_02615 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AYR68_02630 PF00293 NUDIX domain AYR68_02630 PF14803 Nudix N-terminal AYR68_02635 PF00293 NUDIX domain AYR68_02640 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_02645 PF00814 Glycoprotease family AYR68_02650 PF04445 Putative SAM-dependent methyltransferase AYR68_02655 PF01650 Peptidase C13 family AYR68_02660 PF00756 Putative esterase AYR68_02665 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) AYR68_02670 PF00834 Ribulose-phosphate 3 epimerase family AYR68_02675 PF08282 haloacid dehalogenase-like hydrolase AYR68_02685 PF00394 Multicopper oxidase AYR68_02685 PF07731 Multicopper oxidase AYR68_02685 PF07732 Multicopper oxidase AYR68_02690 PF05275 AYR68_02690 AYR68_02695 PF01545 Cation efflux family AYR68_02700 PF00893 Small Multidrug Resistance protein AYR68_02705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR68_02705 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYR68_02710 PF01960 ArgJ family AYR68_02715 PF02445 Quinolinate synthetase A protein AYR68_02740 PF00962 Adenosine/AMP deaminase AYR68_02745 PF00107 Zinc-binding dehydrogenase AYR68_02745 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_02750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_02750 PF03466 LysR substrate binding domain AYR68_02755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_02755 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_02755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_02760 PF07690 Major Facilitator Superfamily AYR68_02765 PF02515 CoA-transferase family III AYR68_02775 PF00890 FAD binding domain AYR68_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_02780 PF03466 LysR substrate binding domain AYR68_02785 PF13531 Bacterial extracellular solute-binding protein AYR68_02790 PF07690 Major Facilitator Superfamily AYR68_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_02795 PF03466 LysR substrate binding domain AYR68_02805 PF01546 Peptidase family M20/M25/M40 AYR68_02805 PF07687 Peptidase dimerisation domain AYR68_02810 PF12625 AYR68_02810 AYR68_02810 PF12833 Helix-turn-helix domain AYR68_02820 PF01810 AYR68_02820 AYR68_02825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_02825 PF03466 LysR substrate binding domain AYR68_02830 PF08908 AYR68_02830 AYR68_02835 PF01717 Cobalamin-independent synthase, Catalytic domain AYR68_02840 PF01613 Flavin reductase like domain AYR68_02850 PF00440 Bacterial regulatory proteins, tetR family AYR68_02855 PF04471 Restriction endonuclease AYR68_02855 PF13401 AAA domain AYR68_02865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_02865 PF03466 LysR substrate binding domain AYR68_02870 PF02567 Phenazine biosynthesis-like protein AYR68_02890 PF01011 PQQ enzyme repeat AYR68_02890 PF13360 PQQ-like domain AYR68_02915 PF06527 AYR68_02915 AYR68_02920 PF05621 AYR68_02920 AYR68_02925 PF00665 Integrase core domain AYR68_02925 PF09299 Mu transposase, C-terminal AYR68_02930 PF08722 TnsA endonuclease N terminal AYR68_02940 PF13182 AYR68_02940 AYR68_02950 PF01507 Phosphoadenosine phosphosulfate reductase family AYR68_02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_02960 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_02970 PF00268 Ribonucleotide reductase, small chain AYR68_02980 PF00317 Ribonucleotide reductase, all-alpha domain AYR68_02980 PF02867 Ribonucleotide reductase, barrel domain AYR68_02980 PF03477 ATP cone domain AYR68_02990 PF00072 Response regulator receiver domain AYR68_02990 PF00486 Transcriptional regulatory protein, C terminal AYR68_02995 PF00512 His Kinase A (phospho-acceptor) domain AYR68_02995 PF00672 HAMP domain AYR68_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_03005 PF00990 GGDEF domain AYR68_03010 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AYR68_03015 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYR68_03020 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AYR68_03020 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AYR68_03025 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AYR68_03030 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYR68_03030 PF10531 SLBB domain AYR68_03030 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYR68_03035 PF00384 Molybdopterin oxidoreductase AYR68_03035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR68_03035 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYR68_03035 PF13510 2Fe-2S iron-sulfur cluster binding domain AYR68_03040 PF00146 NADH dehydrogenase AYR68_03045 PF12838 4Fe-4S dicluster domain AYR68_03050 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AYR68_03055 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYR68_03060 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AYR68_03060 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYR68_03065 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AYR68_03070 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AYR68_03075 PF14681 Uracil phosphoribosyltransferase AYR68_03080 PF00313 'Cold-shock' DNA-binding domain AYR68_03085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_03085 PF03466 LysR substrate binding domain AYR68_03090 PF00175 Oxidoreductase NAD-binding domain AYR68_03090 PF00970 Oxidoreductase FAD-binding domain AYR68_03105 PF05552 Conserved TM helix AYR68_03115 PF03486 HI0933-like protein AYR68_03120 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_03125 PF13437 HlyD family secretion protein AYR68_03125 PF13533 Biotin-lipoyl like AYR68_03130 PF07690 Major Facilitator Superfamily AYR68_03135 PF00440 Bacterial regulatory proteins, tetR family AYR68_03140 PF01810 AYR68_03140 AYR68_03150 PF01588 Putative tRNA binding domain AYR68_03150 PF08264 Anticodon-binding domain of tRNA AYR68_03150 PF09334 tRNA synthetases class I (M) AYR68_03160 PF10609 ParA/MinD ATPase like AYR68_03165 PF01048 Phosphorylase superfamily AYR68_03170 PF09835 AYR68_03170 AYR68_03175 PF01810 AYR68_03175 AYR68_03180 PF00692 dUTPase AYR68_03210 PF01207 Dihydrouridine synthase (Dus) AYR68_03215 PF01578 AYR68_03215 AYR68_03220 PF00448 SRP54-type protein, GTPase domain AYR68_03220 PF02881 SRP54-type protein, helical bundle domain AYR68_03220 PF02978 Signal peptide binding domain AYR68_03225 PF03309 Type III pantothenate kinase AYR68_03230 PF03099 Biotin/lipoate A/B protein ligase family AYR68_03235 PF01925 AYR68_03235 AYR68_03240 PF00392 Bacterial regulatory proteins, gntR family AYR68_03240 PF07729 FCD domain AYR68_03245 PF02463 RecF/RecN/SMC N terminal domain AYR68_03250 PF04354 ZipA, C-terminal FtsZ-binding domain AYR68_03255 PF00533 BRCA1 C Terminus (BRCT) domain AYR68_03255 PF01653 NAD-dependent DNA ligase adenylation domain AYR68_03255 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYR68_03255 PF03120 NAD-dependent DNA ligase OB-fold domain AYR68_03255 PF12826 Helix-hairpin-helix motif AYR68_03255 PF14520 Helix-hairpin-helix domain AYR68_03260 PF00210 Ferritin-like domain AYR68_03265 PF07690 Major Facilitator Superfamily AYR68_03270 PF00982 Glycosyltransferase family 20 AYR68_03275 PF02358 Trehalose-phosphatase AYR68_03285 PF00202 Aminotransferase class-III AYR68_03290 PF00155 Aminotransferase class I and II AYR68_03295 PF13489 Methyltransferase domain AYR68_03300 PF13500 AAA domain AYR68_03305 PF00849 RNA pseudouridylate synthase AYR68_03305 PF01479 S4 domain AYR68_03310 PF04079 Putative transcriptional regulators (Ypuh-like) AYR68_03315 PF02616 ScpA/B protein AYR68_03320 PF01300 Telomere recombination AYR68_03325 PF04315 AYR68_03325 AYR68_03330 PF02620 AYR68_03330 AYR68_03335 PF01783 Ribosomal L32p protein family AYR68_03340 PF00698 Acyl transferase domain AYR68_03345 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_03350 PF00550 Phosphopantetheine attachment site AYR68_03355 PF01476 LysM domain AYR68_03355 PF04972 BON domain AYR68_03360 PF08543 Phosphomethylpyrimidine kinase AYR68_03365 PF13419 Haloacid dehalogenase-like hydrolase AYR68_03370 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYR68_03375 PF09925 AYR68_03375 AYR68_03375 PF14351 AYR68_03375 AYR68_03380 PF14345 AYR68_03380 AYR68_03385 PF02261 Aspartate decarboxylase AYR68_03390 PF01195 Peptidyl-tRNA hydrolase AYR68_03395 PF01386 Ribosomal L25p family AYR68_03400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYR68_03400 PF14572 Phosphoribosyl synthetase-associated domain AYR68_03425 PF00288 GHMP kinases N terminal domain AYR68_03425 PF08544 GHMP kinases C terminal AYR68_03430 PF03550 Outer membrane lipoprotein LolB AYR68_03435 PF13181 Tetratricopeptide repeat AYR68_03435 PF14559 Tetratricopeptide repeat AYR68_03440 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AYR68_03440 PF01488 Shikimate / quinate 5-dehydrogenase AYR68_03440 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AYR68_03445 PF01807 CHC2 zinc finger AYR68_03445 PF08275 DNA primase catalytic core, N-terminal domain AYR68_03445 PF10410 DnaB-helicase binding domain of primase AYR68_03445 PF13662 Toprim domain AYR68_03450 PF13525 Outer membrane lipoprotein AYR68_03455 PF00849 RNA pseudouridylate synthase AYR68_03455 PF01479 S4 domain AYR68_03460 PF02578 Multi-copper polyphenol oxidoreductase laccase AYR68_03465 PF03358 NADPH-dependent FMN reductase AYR68_03470 PF01668 SmpB protein AYR68_03475 PF01467 Cytidylyltransferase AYR68_03480 PF00037 4Fe-4S binding domain AYR68_03495 PF07396 Phosphate-selective porin O and P AYR68_03500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_03500 PF03466 LysR substrate binding domain AYR68_03505 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR68_03510 PF02028 BCCT family transporter AYR68_03515 PF07859 alpha/beta hydrolase fold AYR68_03520 PF00355 Rieske [2Fe-2S] domain AYR68_03520 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR68_03525 PF00171 Aldehyde dehydrogenase family AYR68_03530 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR68_03530 PF00175 Oxidoreductase NAD-binding domain AYR68_03530 PF00970 Oxidoreductase FAD-binding domain AYR68_03545 PF00795 Carbon-nitrogen hydrolase AYR68_03545 PF02540 NAD synthase AYR68_03555 PF02678 Pirin AYR68_03555 PF05726 Pirin C-terminal cupin domain AYR68_03560 PF03653 AYR68_03560 AYR68_03565 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR68_03565 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR68_03570 PF12787 AYR68_03570 AYR68_03575 PF00164 Ribosomal protein S12/S23 AYR68_03580 PF00177 Ribosomal protein S7p/S5e AYR68_03585 PF00009 Elongation factor Tu GTP binding domain AYR68_03585 PF00679 Elongation factor G C-terminus AYR68_03585 PF03144 Elongation factor Tu domain 2 AYR68_03585 PF03764 Elongation factor G, domain IV AYR68_03585 PF14492 Elongation Factor G, domain II AYR68_03590 PF00009 Elongation factor Tu GTP binding domain AYR68_03590 PF03143 Elongation factor Tu C-terminal domain AYR68_03590 PF03144 Elongation factor Tu domain 2 AYR68_03595 PF10118 AYR68_03595 AYR68_03600 PF10118 AYR68_03600 AYR68_03605 PF00583 Acetyltransferase (GNAT) family AYR68_03610 PF04376 AYR68_03610 AYR68_03610 PF04377 AYR68_03610 AYR68_03615 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AYR68_03620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_03625 PF01580 FtsK/SpoIIIE family AYR68_03625 PF09397 Ftsk gamma domain AYR68_03625 PF13491 AYR68_03625 AYR68_03630 PF01810 AYR68_03630 AYR68_03640 PF01527 Transposase AYR68_03645 PF05717 AYR68_03645 AYR68_03650 PF03050 AYR68_03650 AYR68_03650 PF13005 AYR68_03650 AYR68_03650 PF13007 AYR68_03650 AYR68_03650 PF13817 AYR68_03650 AYR68_03655 PF03050 AYR68_03655 AYR68_03655 PF13005 AYR68_03655 AYR68_03655 PF13007 AYR68_03655 AYR68_03655 PF13817 AYR68_03655 AYR68_03660 PF05717 AYR68_03660 AYR68_03665 PF01527 Transposase AYR68_03675 PF03776 Septum formation topological specificity factor MinE AYR68_03680 PF13614 AAA domain AYR68_03685 PF03775 Septum formation inhibitor MinC, C-terminal domain AYR68_03695 PF01553 Acyltransferase AYR68_03700 PF00691 OmpA family AYR68_03705 PF00580 UvrD/REP helicase N-terminal domain AYR68_03705 PF13361 UvrD-like helicase C-terminal domain AYR68_03710 PF00692 dUTPase AYR68_03715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR68_03715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR68_03715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR68_03720 PF00696 Amino acid kinase family AYR68_03725 PF13444 Acetyltransferase (GNAT) domain AYR68_03730 PF13230 Glutamine amidotransferases class-II AYR68_03735 PF01814 Hemerythrin HHE cation binding domain AYR68_03745 PF03658 RnfH family Ubiquitin AYR68_03750 PF04355 SmpA / OmlA family AYR68_03755 PF01475 Ferric uptake regulator family AYR68_03760 PF00437 Type II/IV secretion system protein AYR68_03765 PF00437 Type II/IV secretion system protein AYR68_03770 PF01168 Alanine racemase, N-terminal domain AYR68_03775 PF13476 AAA domain AYR68_03775 PF13558 Putative exonuclease SbcCD, C subunit AYR68_03780 PF00149 Calcineurin-like phosphoesterase AYR68_03780 PF12320 Type 5 capsule protein repressor C-terminal domain AYR68_03785 PF02566 OsmC-like protein AYR68_03800 PF01370 NAD dependent epimerase/dehydratase family AYR68_03800 PF08338 Domain of unknown function (DUF1731) AYR68_03805 PF01266 FAD dependent oxidoreductase AYR68_03810 PF00490 Delta-aminolevulinic acid dehydratase AYR68_03815 PF03061 Thioesterase superfamily AYR68_03820 PF00529 HlyD family secretion protein AYR68_03820 PF16576 AYR68_03820 AYR68_03825 PF07690 Major Facilitator Superfamily AYR68_03830 PF01019 Gamma-glutamyltranspeptidase AYR68_03840 PF00589 Phage integrase family AYR68_03840 PF13356 Domain of unknown function (DUF4102) AYR68_03855 PF08867 AYR68_03855 AYR68_03890 PF13935 AYR68_03890 AYR68_03915 PF10065 AYR68_03915 AYR68_03930 PF00717 Peptidase S24-like AYR68_03930 PF01381 Helix-turn-helix AYR68_03935 PF01381 Helix-turn-helix AYR68_03975 PF00145 C-5 cytosine-specific DNA methylase AYR68_03985 PF01695 IstB-like ATP binding protein AYR68_04000 PF05866 Endodeoxyribonuclease RusA AYR68_04005 PF12844 Helix-turn-helix domain AYR68_04030 PF07007 Protein of unknown function (DUF1311) AYR68_04040 PF07751 AYR68_04040 AYR68_04090 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYR68_04105 PF12571 AYR68_04105 AYR68_04160 PF10547 AYR68_04160 AYR68_04170 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AYR68_04175 PF05016 Plasmid stabilisation system protein AYR68_04195 PF02018 Carbohydrate binding domain AYR68_04195 PF09327 AYR68_04195 AYR68_04195 PF15711 AYR68_04195 AYR68_04235 PF00271 Helicase conserved C-terminal domain AYR68_04235 PF04851 Type III restriction enzyme, res subunit AYR68_04260 PF16082 AYR68_04260 AYR68_04275 PF05488 PAAR motif AYR68_04295 PF13175 AAA ATPase domain AYR68_04300 PF02086 D12 class N6 adenine-specific DNA methyltransferase AYR68_04315 PF01609 Transposase DDE domain AYR68_04320 PF01609 Transposase DDE domain AYR68_04340 PF03573 outer membrane porin, OprD family AYR68_04345 PF00083 Sugar (and other) transporter AYR68_04350 PF00701 Dihydrodipicolinate synthetase family AYR68_04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_04355 PF03466 LysR substrate binding domain AYR68_04365 PF06912 AYR68_04365 AYR68_04370 PF12697 Alpha/beta hydrolase family AYR68_04375 PF13520 Amino acid permease AYR68_04380 PF02574 Homocysteine S-methyltransferase AYR68_04390 PF06039 AYR68_04390 AYR68_04395 PF00732 GMC oxidoreductase AYR68_04395 PF05199 GMC oxidoreductase AYR68_04400 PF00171 Aldehyde dehydrogenase family AYR68_04405 PF00440 Bacterial regulatory proteins, tetR family AYR68_04405 PF13977 Bacterial transcriptional repressor AYR68_04410 PF02028 BCCT family transporter AYR68_04415 PF02028 BCCT family transporter AYR68_04420 PF01914 AYR68_04420 AYR68_04425 PF03061 Thioesterase superfamily AYR68_04435 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYR68_04440 PF00375 Sodium:dicarboxylate symporter family AYR68_04445 PF07152 YaeQ protein AYR68_04450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR68_04455 PF01522 Polysaccharide deacetylase AYR68_04455 PF14883 Hypothetical glycosyl hydrolase family 13 AYR68_04460 PF13641 Glycosyltransferase like family 2 AYR68_04465 PF13994 AYR68_04465 AYR68_04470 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_04475 PF04973 AYR68_04475 AYR68_04485 PF01614 Bacterial transcriptional regulator AYR68_04485 PF09339 IclR helix-turn-helix domain AYR68_04490 PF00355 Rieske [2Fe-2S] domain AYR68_04500 PF00355 Rieske [2Fe-2S] domain AYR68_04505 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_04510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR68_04515 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_04515 PF14759 Reductase C-terminal AYR68_04520 PF07690 Major Facilitator Superfamily AYR68_04525 PF07883 Cupin domain AYR68_04530 PF12697 Alpha/beta hydrolase family AYR68_04535 PF00106 short chain dehydrogenase AYR68_04540 PF01958 Domain of unknown function DUF108 AYR68_04540 PF03447 Homoserine dehydrogenase, NAD binding domain AYR68_04545 PF00171 Aldehyde dehydrogenase family AYR68_04550 PF00205 Thiamine pyrophosphate enzyme, central domain AYR68_04550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYR68_04550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYR68_04560 PF07690 Major Facilitator Superfamily AYR68_04565 PF01327 Polypeptide deformylase AYR68_04570 PF04960 Glutaminase AYR68_04575 PF12833 Helix-turn-helix domain AYR68_04580 PF07690 Major Facilitator Superfamily AYR68_04585 PF01263 Aldose 1-epimerase AYR68_04595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_04595 PF03466 LysR substrate binding domain AYR68_04600 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_04605 PF07690 Major Facilitator Superfamily AYR68_04610 PF00456 Transketolase, thiamine diphosphate binding domain AYR68_04615 PF02779 Transketolase, pyrimidine binding domain AYR68_04615 PF02780 Transketolase, C-terminal domain AYR68_04620 PF00809 Pterin binding enzyme AYR68_04620 PF02310 B12 binding domain AYR68_04620 PF02574 Homocysteine S-methyltransferase AYR68_04620 PF02607 B12 binding domain AYR68_04620 PF02965 Vitamin B12 dependent methionine synthase, activation domain AYR68_04625 PF01384 AYR68_04625 AYR68_04630 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_04645 PF03781 Sulfatase-modifying factor enzyme 1 AYR68_04650 PF00884 Sulfatase AYR68_04655 PF01694 Rhomboid family AYR68_04660 PF01106 NifU-like domain AYR68_04660 PF01521 Iron-sulphur cluster biosynthesis AYR68_04665 PF00593 TonB dependent receptor AYR68_04665 PF07715 TonB-dependent Receptor Plug Domain AYR68_04675 PF12697 Alpha/beta hydrolase family AYR68_04680 PF00484 Carbonic anhydrase AYR68_04685 PF13472 GDSL-like Lipase/Acylhydrolase family AYR68_04690 PF00005 ABC transporter AYR68_04695 PF02687 AYR68_04695 AYR68_04700 PF01694 Rhomboid family AYR68_04705 PF00912 Transglycosylase AYR68_04710 PF02503 Polyphosphate kinase middle domain AYR68_04710 PF13089 Polyphosphate kinase N-terminal domain AYR68_04710 PF13090 Polyphosphate kinase C-terminal domain AYR68_04715 PF05036 Sporulation related domain AYR68_04720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_04720 PF03466 LysR substrate binding domain AYR68_04725 PF00561 alpha/beta hydrolase fold AYR68_04730 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_04735 PF00301 Rubredoxin AYR68_04740 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AYR68_04745 PF05728 Uncharacterised protein family (UPF0227) AYR68_04750 PF00152 tRNA synthetases class II (D, K and N) AYR68_04750 PF01336 OB-fold nucleic acid binding domain AYR68_04755 PF14052 Capsule assembly protein Wzi AYR68_04760 PF01507 Phosphoadenosine phosphosulfate reductase family AYR68_04765 PF00009 Elongation factor Tu GTP binding domain AYR68_04770 PF09998 AYR68_04770 AYR68_04780 PF03600 Citrate transporter AYR68_04790 PF00571 CBS domain AYR68_04790 PF01595 AYR68_04790 AYR68_04790 PF03471 Transporter associated domain AYR68_04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_04795 PF03466 LysR substrate binding domain AYR68_04800 PF00463 Isocitrate lyase family AYR68_04805 PF04170 NlpE N-terminal domain AYR68_04815 PF01774 UreD urease accessory protein AYR68_04820 PF00547 Urease, gamma subunit AYR68_04825 PF00699 Urease beta subunit AYR68_04830 PF00449 Urease alpha-subunit, N-terminal domain AYR68_04830 PF01979 Amidohydrolase family AYR68_04835 PF02814 UreE urease accessory protein, N-terminal domain AYR68_04835 PF05194 UreE urease accessory protein, C-terminal domain AYR68_04840 PF01730 UreF AYR68_04845 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYR68_04850 PF04955 AYR68_04850 AYR68_04855 PF03602 Conserved hypothetical protein 95 AYR68_04860 PF00905 Penicillin binding protein transpeptidase domain AYR68_04860 PF03717 Penicillin-binding Protein dimerisation domain AYR68_04875 PF00406 Adenylate kinase AYR68_04875 PF05191 Adenylate kinase, active site lid AYR68_04880 PF00633 Helix-hairpin-helix motif AYR68_04880 PF00730 HhH-GPD superfamily base excision DNA repair protein AYR68_04880 PF10576 Iron-sulfur binding domain of endonuclease III AYR68_04885 PF04060 Putative Fe-S cluster AYR68_04885 PF14697 4Fe-4S dicluster domain AYR68_04890 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYR68_04890 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYR68_04895 PF03724 META domain AYR68_04895 PF14302 AYR68_04895 AYR68_04900 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AYR68_04905 PF02590 Predicted SPOUT methyltransferase AYR68_04910 PF00004 ATPase family associated with various cellular activities (AAA) AYR68_04910 PF02190 ATP-dependent protease La (LON) domain AYR68_04910 PF05362 Lon protease (S16) C-terminal proteolytic domain AYR68_04915 PF03895 YadA-like C-terminal region AYR68_04915 PF05658 Head domain of trimeric autotransporter adhesin AYR68_04915 PF05662 Coiled stalk of trimeric autotransporter adhesin AYR68_04915 PF13018 AYR68_04915 AYR68_04920 PF00691 OmpA family AYR68_04920 PF04355 SmpA / OmlA family AYR68_04925 PF01609 Transposase DDE domain AYR68_04930 PF01609 Transposase DDE domain AYR68_04935 PF01812 5-formyltetrahydrofolate cyclo-ligase family AYR68_04975 PF13479 AYR68_04975 AYR68_05005 PF00717 Peptidase S24-like AYR68_05005 PF01381 Helix-turn-helix AYR68_05010 PF14549 DNA-binding transcriptional regulator Cro AYR68_05025 PF01555 DNA methylase AYR68_05030 PF07120 AYR68_05030 AYR68_05055 PF04480 Protein of unknown function (DUF559) AYR68_05095 PF10045 AYR68_05095 AYR68_05100 PF17289 AYR68_05100 AYR68_05105 PF13264 AYR68_05105 AYR68_05110 PF04233 AYR68_05110 AYR68_05120 PF13876 AYR68_05120 AYR68_05135 PF10281 AYR68_05135 AYR68_05150 PF01609 Transposase DDE domain AYR68_05155 PF01609 Transposase DDE domain AYR68_05160 PF00905 Penicillin binding protein transpeptidase domain AYR68_05180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYR68_05185 PF10544 AYR68_05185 AYR68_05200 PF01609 Transposase DDE domain AYR68_05205 PF01609 Transposase DDE domain AYR68_05230 PF13554 Bacteriophage related domain of unknown function AYR68_05260 PF01381 Helix-turn-helix AYR68_05265 PF05015 Plasmid maintenance system killer protein AYR68_05320 PF05838 Glycosyl hydrolase 108 AYR68_05320 PF09374 Predicted Peptidoglycan domain AYR68_05325 PF00593 TonB dependent receptor AYR68_05325 PF07715 TonB-dependent Receptor Plug Domain AYR68_05330 PF00884 Sulfatase AYR68_05330 PF08019 AYR68_05330 AYR68_05340 PF00589 Phage integrase family AYR68_05340 PF13356 Domain of unknown function (DUF4102) AYR68_05350 PF05164 Cell division protein ZapA AYR68_05360 PF03695 Uncharacterised protein family (UPF0149) AYR68_05365 PF00557 Metallopeptidase family M24 AYR68_05365 PF05195 Aminopeptidase P, N-terminal domain AYR68_05370 PF01494 FAD binding domain AYR68_05375 PF01494 FAD binding domain AYR68_05385 PF13411 MerR HTH family regulatory protein AYR68_05390 PF01545 Cation efflux family AYR68_05395 PF01810 AYR68_05395 AYR68_05400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_05400 PF03466 LysR substrate binding domain AYR68_05410 PF01609 Transposase DDE domain AYR68_05415 PF01609 Transposase DDE domain AYR68_05420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYR68_05425 PF02021 Uncharacterised protein family UPF0102 AYR68_05430 PF04972 BON domain AYR68_05435 PF07859 alpha/beta hydrolase fold AYR68_05440 PF00293 NUDIX domain AYR68_05440 PF09297 NADH pyrophosphatase zinc ribbon domain AYR68_05450 PF00075 RNase H AYR68_05450 PF00929 Exonuclease AYR68_05455 PF01464 Transglycosylase SLT domain AYR68_05455 PF01476 LysM domain AYR68_05460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYR68_05465 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_05470 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_05475 PF00005 ABC transporter AYR68_05475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYR68_05480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR68_05485 PF00593 TonB dependent receptor AYR68_05485 PF07715 TonB-dependent Receptor Plug Domain AYR68_05495 PF00929 Exonuclease AYR68_05500 PF01979 Amidohydrolase family AYR68_05505 PF00990 GGDEF domain AYR68_05510 PF00764 Arginosuccinate synthase AYR68_05515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR68_05515 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_05525 PF01435 Peptidase family M48 AYR68_05530 PF05987 AYR68_05530 AYR68_05535 PF03180 NLPA lipoprotein AYR68_05545 PF00440 Bacterial regulatory proteins, tetR family AYR68_05550 PF05954 Phage late control gene D protein (GPD) AYR68_05550 PF10106 AYR68_05550 AYR68_05550 PF13296 AYR68_05550 AYR68_05560 PF03050 AYR68_05560 AYR68_05560 PF13005 AYR68_05560 AYR68_05560 PF13007 AYR68_05560 AYR68_05560 PF13817 AYR68_05560 AYR68_05565 PF05717 AYR68_05565 AYR68_05570 PF01527 Transposase AYR68_05575 PF08238 Sel1 repeat AYR68_05580 PF08238 Sel1 repeat AYR68_05585 PF08238 Sel1 repeat AYR68_05615 PF00324 Amino acid permease AYR68_05620 PF01266 FAD dependent oxidoreductase AYR68_05625 PF00324 Amino acid permease AYR68_05630 PF02743 Cache domain AYR68_05635 PF00392 Bacterial regulatory proteins, gntR family AYR68_05635 PF07729 FCD domain AYR68_05640 PF12680 SnoaL-like domain AYR68_05645 PF00171 Aldehyde dehydrogenase family AYR68_05650 PF01037 AsnC family AYR68_05650 PF13404 AsnC-type helix-turn-helix domain AYR68_05655 PF00202 Aminotransferase class-III AYR68_05660 PF04958 Arginine N-succinyltransferase beta subunit AYR68_05670 PF13610 AYR68_05670 AYR68_05675 PF00239 Resolvase, N terminal domain AYR68_05675 PF02796 Helix-turn-helix domain of resolvase AYR68_05680 PF13354 Beta-lactamase enzyme family AYR68_05685 PF13610 AYR68_05685 AYR68_05690 PF10118 AYR68_05690 AYR68_05695 PF00106 short chain dehydrogenase AYR68_05700 PF13738 Pyridine nucleotide-disulphide oxidoreductase AYR68_05710 PF00860 Permease family AYR68_05715 PF00962 Adenosine/AMP deaminase AYR68_05720 PF01292 Prokaryotic cytochrome b561 AYR68_05730 PF01351 Ribonuclease HII AYR68_05735 PF02599 Global regulator protein family AYR68_05740 PF00696 Amino acid kinase family AYR68_05740 PF01842 ACT domain AYR68_05740 PF13840 ACT domain AYR68_05745 PF01411 tRNA synthetases class II (A) AYR68_05745 PF02272 DHHA1 domain AYR68_05745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYR68_05750 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYR68_05750 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYR68_05755 PF13393 Histidyl-tRNA synthetase AYR68_05760 PF00709 Adenylosuccinate synthetase AYR68_05770 PF01435 Peptidase family M48 AYR68_05775 PF00248 Aldo/keto reductase family AYR68_05780 PF00027 Cyclic nucleotide-binding domain AYR68_05780 PF00325 Bacterial regulatory proteins, crp family AYR68_05785 PF02566 OsmC-like protein AYR68_05790 PF00583 Acetyltransferase (GNAT) family AYR68_05795 PF01551 Peptidase family M23 AYR68_05800 PF00004 ATPase family associated with various cellular activities (AAA) AYR68_05800 PF02861 Clp amino terminal domain AYR68_05800 PF07724 AAA domain (Cdc48 subfamily) AYR68_05800 PF10431 C-terminal, D2-small domain, of ClpB protein AYR68_05805 PF02464 Competence-damaged protein AYR68_05815 PF01170 Putative RNA methylase family UPF0020 AYR68_05815 PF02926 THUMP domain AYR68_05815 PF10672 S-adenosylmethionine-dependent methyltransferase AYR68_05825 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYR68_05825 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYR68_05835 PF00691 OmpA family AYR68_05840 PF03807 NADP oxidoreductase coenzyme F420-dependent AYR68_05840 PF10728 Domain of unknown function (DUF2520) AYR68_05845 PF00043 Glutathione S-transferase, C-terminal domain AYR68_05845 PF02798 Glutathione S-transferase, N-terminal domain AYR68_05850 PF02390 Putative methyltransferase AYR68_05855 PF00932 Lamin Tail Domain AYR68_05860 PF00043 Glutathione S-transferase, C-terminal domain AYR68_05860 PF02798 Glutathione S-transferase, N-terminal domain AYR68_05870 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_05870 PF13192 Thioredoxin domain AYR68_05875 PF07866 Protein of unknown function (DUF1653) AYR68_05880 PF01596 O-methyltransferase AYR68_05885 PF13619 AYR68_05885 AYR68_05890 PF00578 AhpC/TSA family AYR68_05890 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYR68_05895 PF00270 DEAD/DEAH box helicase AYR68_05895 PF00271 Helicase conserved C-terminal domain AYR68_05895 PF04408 Helicase associated domain (HA2) AYR68_05895 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AYR68_05895 PF11898 AYR68_05895 AYR68_05900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYR68_05900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYR68_05905 PF03573 outer membrane porin, OprD family AYR68_05910 PF07690 Major Facilitator Superfamily AYR68_05915 PF03594 AYR68_05915 AYR68_05920 PF00106 short chain dehydrogenase AYR68_05925 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR68_05925 PF00175 Oxidoreductase NAD-binding domain AYR68_05925 PF00970 Oxidoreductase FAD-binding domain AYR68_05930 PF00866 Ring hydroxylating beta subunit AYR68_05935 PF00355 Rieske [2Fe-2S] domain AYR68_05935 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR68_05940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_05940 PF03466 LysR substrate binding domain AYR68_05945 PF00403 Heavy-metal-associated domain AYR68_05950 PF00122 E1-E2 ATPase AYR68_05950 PF00403 Heavy-metal-associated domain AYR68_05950 PF00702 haloacid dehalogenase-like hydrolase AYR68_05955 PF00376 MerR family regulatory protein AYR68_05955 PF09278 MerR, DNA binding AYR68_05960 PF04828 Glutathione-dependent formaldehyde-activating enzyme AYR68_05965 PF03860 Domain of Unknown Function (DUF326) AYR68_05975 PF01810 AYR68_05975 AYR68_05985 PF02609 Exonuclease VII small subunit AYR68_05990 PF02601 AYR68_05990 AYR68_05990 PF13742 AYR68_05990 AYR68_06005 PF00717 Peptidase S24-like AYR68_06005 PF01381 Helix-turn-helix AYR68_06025 PF01609 Transposase DDE domain AYR68_06030 PF01609 Transposase DDE domain AYR68_06035 PF01810 AYR68_06035 AYR68_06040 PF00313 'Cold-shock' DNA-binding domain AYR68_06050 PF03807 NADP oxidoreductase coenzyme F420-dependent AYR68_06050 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYR68_06065 PF04233 AYR68_06065 AYR68_06070 PF07690 Major Facilitator Superfamily AYR68_06075 PF01638 HxlR-like helix-turn-helix AYR68_06090 PF13628 AYR68_06090 AYR68_06105 PF01406 tRNA synthetases class I (C) catalytic domain AYR68_06105 PF09190 DALR domain AYR68_06110 PF00571 CBS domain AYR68_06110 PF01380 SIS domain AYR68_06115 PF08282 haloacid dehalogenase-like hydrolase AYR68_06120 PF06835 Lipopolysaccharide-assembly, LptC-related AYR68_06125 PF03968 OstA-like protein AYR68_06130 PF00005 ABC transporter AYR68_06130 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYR68_06135 PF02321 Outer membrane efflux protein AYR68_06140 PF00005 ABC transporter AYR68_06140 PF00664 ABC transporter transmembrane region AYR68_06145 PF13437 HlyD family secretion protein AYR68_06145 PF13533 Biotin-lipoyl like AYR68_06150 PF01205 Uncharacterized protein family UPF0029 AYR68_06150 PF09186 Domain of unknown function (DUF1949) AYR68_06155 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_06155 PF14602 Hexapeptide repeat of succinyl-transferase AYR68_06160 PF00582 Universal stress protein family AYR68_06165 PF01596 O-methyltransferase AYR68_06170 PF08291 Peptidase M15 AYR68_06175 PF00037 4Fe-4S binding domain AYR68_06175 PF11953 Domain of unknown function (DUF3470) AYR68_06180 PF13673 Acetyltransferase (GNAT) domain AYR68_06185 PF00488 MutS domain V AYR68_06185 PF01624 MutS domain I AYR68_06185 PF05188 MutS domain II AYR68_06185 PF05190 MutS family domain IV AYR68_06185 PF05192 MutS domain III AYR68_06190 PF01037 AsnC family AYR68_06190 PF13404 AsnC-type helix-turn-helix domain AYR68_06195 PF00892 EamA-like transporter family AYR68_06200 PF00563 EAL domain AYR68_06205 PF03279 AYR68_06205 AYR68_06210 PF00440 Bacterial regulatory proteins, tetR family AYR68_06215 PF07690 Major Facilitator Superfamily AYR68_06220 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AYR68_06225 PF07739 TipAS antibiotic-recognition domain AYR68_06225 PF13411 MerR HTH family regulatory protein AYR68_06230 PF08856 AYR68_06230 AYR68_06235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR68_06235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR68_06245 PF00583 Acetyltransferase (GNAT) family AYR68_06250 PF13419 Haloacid dehalogenase-like hydrolase AYR68_06255 PF13354 Beta-lactamase enzyme family AYR68_06260 PF05954 Phage late control gene D protein (GPD) AYR68_06260 PF10106 AYR68_06260 AYR68_06260 PF13296 AYR68_06260 AYR68_06265 PF03527 AYR68_06265 AYR68_06265 PF05593 AYR68_06265 AYR68_06265 PF15636 AYR68_06265 AYR68_06280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_06280 PF03466 LysR substrate binding domain AYR68_06285 PF01566 AYR68_06285 AYR68_06290 PF03746 LamB/YcsF family AYR68_06295 PF07286 Protein of unknown function (DUF1445) AYR68_06300 PF02626 Allophanate hydrolase subunit 2 AYR68_06300 PF02682 Allophanate hydrolase subunit 1 AYR68_06305 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AYR68_06305 PF00364 Biotin-requiring enzyme AYR68_06305 PF02785 Biotin carboxylase C-terminal domain AYR68_06305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR68_06310 PF00654 Voltage gated chloride channel AYR68_06315 PF08238 Sel1 repeat AYR68_06335 PF00440 Bacterial regulatory proteins, tetR family AYR68_06340 PF10604 Polyketide cyclase / dehydrase and lipid transport AYR68_06345 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_06345 PF13823 Alcohol dehydrogenase GroES-associated AYR68_06350 PF09347 Domain of unknown function (DUF1989) AYR68_06355 PF09347 Domain of unknown function (DUF1989) AYR68_06360 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AYR68_06360 PF00364 Biotin-requiring enzyme AYR68_06360 PF02626 Allophanate hydrolase subunit 2 AYR68_06360 PF02682 Allophanate hydrolase subunit 1 AYR68_06360 PF02785 Biotin carboxylase C-terminal domain AYR68_06360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR68_06365 PF02525 Flavodoxin-like fold AYR68_06370 PF01638 HxlR-like helix-turn-helix AYR68_06385 PF08753 NikR C terminal nickel binding domain AYR68_06390 PF01425 Amidase AYR68_06395 PF09084 NMT1/THI5 like AYR68_06400 PF00005 ABC transporter AYR68_06405 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_06420 PF05591 AYR68_06420 AYR68_06425 PF05943 AYR68_06425 AYR68_06430 PF05638 Protein of unknown function (DUF796) AYR68_06435 PF04965 Gene 25-like lysozyme AYR68_06440 PF05947 AYR68_06440 AYR68_06445 PF06996 AYR68_06445 AYR68_06455 PF06744 AYR68_06455 AYR68_06455 PF06761 AYR68_06455 AYR68_06455 PF14331 AYR68_06455 AYR68_06460 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) AYR68_06465 PF00691 OmpA family AYR68_06470 PF05488 PAAR motif AYR68_06475 PF00004 ATPase family associated with various cellular activities (AAA) AYR68_06475 PF07724 AAA domain (Cdc48 subfamily) AYR68_06475 PF10431 C-terminal, D2-small domain, of ClpB protein AYR68_06480 PF06812 AYR68_06480 AYR68_06485 PF05936 AYR68_06485 AYR68_06490 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AYR68_06500 PF13539 D-alanyl-D-alanine carboxypeptidase AYR68_06505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_06505 PF03466 LysR substrate binding domain AYR68_06510 PF12796 Ankyrin repeats (3 copies) AYR68_06515 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYR68_06520 PF07690 Major Facilitator Superfamily AYR68_06525 PF06224 AYR68_06525 AYR68_06530 PF00583 Acetyltransferase (GNAT) family AYR68_06535 PF02677 AYR68_06535 AYR68_06545 PF01609 Transposase DDE domain AYR68_06550 PF01609 Transposase DDE domain AYR68_06555 PF00376 MerR family regulatory protein AYR68_06555 PF09278 MerR, DNA binding AYR68_06560 PF03891 AYR68_06560 AYR68_06560 PF11720 Peptidase inhibitor I78 family AYR68_06565 PF00701 Dihydrodipicolinate synthetase family AYR68_06570 PF00892 EamA-like transporter family AYR68_06575 PF00392 Bacterial regulatory proteins, gntR family AYR68_06575 PF07729 FCD domain AYR68_06580 PF05544 Proline racemase AYR68_06585 PF01266 FAD dependent oxidoreductase AYR68_06590 PF13510 2Fe-2S iron-sulfur cluster binding domain AYR68_06600 PF13610 AYR68_06600 AYR68_06610 PF08448 PAS fold AYR68_06610 PF12833 Helix-turn-helix domain AYR68_06615 PF00083 Sugar (and other) transporter AYR68_06620 PF00171 Aldehyde dehydrogenase family AYR68_06625 PF13520 Amino acid permease AYR68_06630 PF03313 AYR68_06630 AYR68_06630 PF03315 Serine dehydratase beta chain AYR68_06635 PF00171 Aldehyde dehydrogenase family AYR68_06635 PF01575 MaoC like domain AYR68_06640 PF05138 Phenylacetic acid catabolic protein AYR68_06645 PF06243 Phenylacetic acid degradation B AYR68_06650 PF05138 Phenylacetic acid catabolic protein AYR68_06655 PF01883 Domain of unknown function DUF59 AYR68_06660 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR68_06660 PF00175 Oxidoreductase NAD-binding domain AYR68_06660 PF00970 Oxidoreductase FAD-binding domain AYR68_06665 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_06670 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_06675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR68_06675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR68_06680 PF00108 Thiolase, N-terminal domain AYR68_06680 PF02803 Thiolase, C-terminal domain AYR68_06685 PF00501 AMP-binding enzyme AYR68_06685 PF14535 AMP-binding enzyme C-terminal domain AYR68_06690 PF07848 PaaX-like protein AYR68_06690 PF08223 PaaX-like protein C-terminal domain AYR68_06695 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_06700 PF03061 Thioesterase superfamily AYR68_06715 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AYR68_06725 PF00440 Bacterial regulatory proteins, tetR family AYR68_06735 PF00199 Catalase AYR68_06740 PF01292 Prokaryotic cytochrome b561 AYR68_06745 PF01609 Transposase DDE domain AYR68_06750 PF01609 Transposase DDE domain AYR68_06755 PF07045 Protein of unknown function (DUF1330) AYR68_06760 PF00392 Bacterial regulatory proteins, gntR family AYR68_06760 PF07729 FCD domain AYR68_06765 PF06684 Amino acid synthesis AYR68_06770 PF12697 Alpha/beta hydrolase family AYR68_06775 PF01613 Flavin reductase like domain AYR68_06780 PF00296 Luciferase-like monooxygenase AYR68_06785 PF00171 Aldehyde dehydrogenase family AYR68_06790 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYR68_06800 PF00171 Aldehyde dehydrogenase family AYR68_06805 PF02627 Carboxymuconolactone decarboxylase family AYR68_06810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_06810 PF03466 LysR substrate binding domain AYR68_06815 PF02525 Flavodoxin-like fold AYR68_06820 PF01614 Bacterial transcriptional regulator AYR68_06820 PF09339 IclR helix-turn-helix domain AYR68_06825 PF01494 FAD binding domain AYR68_06830 PF00392 Bacterial regulatory proteins, gntR family AYR68_06830 PF07702 UTRA domain AYR68_06835 PF13343 Bacterial extracellular solute-binding protein AYR68_06840 PF00005 ABC transporter AYR68_06845 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_06850 PF01266 FAD dependent oxidoreductase AYR68_06855 PF00266 Aminotransferase class-V AYR68_06860 PF13419 Haloacid dehalogenase-like hydrolase AYR68_06865 PF07690 Major Facilitator Superfamily AYR68_06870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_06870 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_06870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_06875 PF02515 CoA-transferase family III AYR68_06880 PF01614 Bacterial transcriptional regulator AYR68_06880 PF09339 IclR helix-turn-helix domain AYR68_06885 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_06890 PF03060 Nitronate monooxygenase AYR68_06895 PF07690 Major Facilitator Superfamily AYR68_06900 PF01614 Bacterial transcriptional regulator AYR68_06900 PF09339 IclR helix-turn-helix domain AYR68_06905 PF00108 Thiolase, N-terminal domain AYR68_06905 PF02803 Thiolase, C-terminal domain AYR68_06910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR68_06910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR68_06915 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_06920 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_06925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_06925 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_06925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_06930 PF07690 Major Facilitator Superfamily AYR68_06935 PF01144 Coenzyme A transferase AYR68_06940 PF01144 Coenzyme A transferase AYR68_06950 PF07690 Major Facilitator Superfamily AYR68_06955 PF03061 Thioesterase superfamily AYR68_06960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_06960 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_06960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_06960 PF12418 AYR68_06960 AYR68_06960 PF12806 AYR68_06960 AYR68_06965 PF13622 Thioesterase-like superfamily AYR68_06970 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AYR68_06975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_06975 PF03466 LysR substrate binding domain AYR68_06980 PF00682 HMGL-like AYR68_06985 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AYR68_06985 PF00364 Biotin-requiring enzyme AYR68_06985 PF02785 Biotin carboxylase C-terminal domain AYR68_06985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR68_06990 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_06995 PF01039 Carboxyl transferase domain AYR68_07000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_07000 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_07000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_07005 PF00440 Bacterial regulatory proteins, tetR family AYR68_07010 PF00501 AMP-binding enzyme AYR68_07010 PF13193 AMP-binding enzyme C-terminal domain AYR68_07015 PF13649 Methyltransferase domain AYR68_07025 PF13472 GDSL-like Lipase/Acylhydrolase family AYR68_07030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_07030 PF03466 LysR substrate binding domain AYR68_07065 PF02464 Competence-damaged protein AYR68_07070 PF14518 Iron-containing redox enzyme AYR68_07075 PF00199 Catalase AYR68_07075 PF06628 Catalase-related immune-responsive AYR68_07080 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_07090 PF10685 AYR68_07090 AYR68_07100 PF00717 Peptidase S24-like AYR68_07105 PF01810 AYR68_07105 AYR68_07110 PF01037 AsnC family AYR68_07110 PF13412 Winged helix-turn-helix DNA-binding AYR68_07120 PF00072 Response regulator receiver domain AYR68_07120 PF00512 His Kinase A (phospho-acceptor) domain AYR68_07120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_07125 PF00072 Response regulator receiver domain AYR68_07125 PF00196 Bacterial regulatory proteins, luxR family AYR68_07130 PF14542 GCN5-related N-acetyl-transferase AYR68_07135 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_07140 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_07145 PF00005 ABC transporter AYR68_07155 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR68_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_07160 PF03466 LysR substrate binding domain AYR68_07165 PF01810 AYR68_07165 AYR68_07170 PF00266 Aminotransferase class-V AYR68_07180 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_07180 PF06426 Serine acetyltransferase, N-terminal AYR68_07185 PF00581 Rhodanese-like domain AYR68_07190 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_07195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_07195 PF03466 LysR substrate binding domain AYR68_07200 PF00043 Glutathione S-transferase, C-terminal domain AYR68_07200 PF02798 Glutathione S-transferase, N-terminal domain AYR68_07205 PF13417 Glutathione S-transferase, N-terminal domain AYR68_07205 PF14834 Glutathione S-transferase, C-terminal domain AYR68_07210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_07210 PF03466 LysR substrate binding domain AYR68_07215 PF03788 AYR68_07215 AYR68_07220 PF04172 AYR68_07220 AYR68_07225 PF00155 Aminotransferase class I and II AYR68_07225 PF00392 Bacterial regulatory proteins, gntR family AYR68_07230 PF04299 Putative FMN-binding domain AYR68_07235 PF13302 Acetyltransferase (GNAT) domain AYR68_07240 PF07690 Major Facilitator Superfamily AYR68_07245 PF16957 AYR68_07245 AYR68_07250 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AYR68_07255 PF06857 AYR68_07255 AYR68_07260 PF01039 Carboxyl transferase domain AYR68_07265 PF06833 Malonate decarboxylase gamma subunit (MdcE) AYR68_07270 PF10620 AYR68_07270 AYR68_07275 PF00698 Acyl transferase domain AYR68_07280 PF03817 AYR68_07280 AYR68_07285 PF03818 AYR68_07285 AYR68_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_07290 PF03466 LysR substrate binding domain AYR68_07295 PF00155 Aminotransferase class I and II AYR68_07295 PF00392 Bacterial regulatory proteins, gntR family AYR68_07305 PF02322 AYR68_07305 AYR68_07310 PF01654 AYR68_07310 AYR68_07320 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR68_07325 PF00296 Luciferase-like monooxygenase AYR68_07330 PF00083 Sugar (and other) transporter AYR68_07335 PF13610 AYR68_07335 AYR68_07345 PF13610 AYR68_07345 AYR68_07350 PF00893 Small Multidrug Resistance protein AYR68_07355 PF00809 Pterin binding enzyme AYR68_07360 PF04986 AYR68_07360 AYR68_07360 PF14319 AYR68_07360 AYR68_07365 PF13354 Beta-lactamase enzyme family AYR68_07370 PF13417 Glutathione S-transferase, N-terminal domain AYR68_07375 PF00005 ABC transporter AYR68_07375 PF00664 ABC transporter transmembrane region AYR68_07405 PF00809 Pterin binding enzyme AYR68_07410 PF04986 AYR68_07410 AYR68_07410 PF14319 AYR68_07410 AYR68_07420 PF07091 Ribosomal RNA methyltransferase (FmrO) AYR68_07430 PF01609 Transposase DDE domain AYR68_07435 PF00005 ABC transporter AYR68_07435 PF12848 ABC transporter AYR68_07440 PF01636 Phosphotransferase enzyme family AYR68_07450 PF03050 AYR68_07450 AYR68_07450 PF13005 AYR68_07450 AYR68_07450 PF13007 AYR68_07450 AYR68_07450 PF13817 AYR68_07450 AYR68_07455 PF05717 AYR68_07455 AYR68_07470 PF01051 Initiator Replication protein AYR68_07485 PF07995 Glucose / Sorbosone dehydrogenase AYR68_07490 PF00582 Universal stress protein family AYR68_07495 PF00563 EAL domain AYR68_07495 PF00990 GGDEF domain AYR68_07495 PF08447 PAS fold AYR68_07495 PF08448 PAS fold AYR68_07505 PF01047 MarR family AYR68_07515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AYR68_07515 PF02378 Phosphotransferase system, EIIC AYR68_07520 PF00294 pfkB family carbohydrate kinase AYR68_07525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AYR68_07525 PF00381 PTS HPr component phosphorylation site AYR68_07525 PF00391 PEP-utilising enzyme, mobile domain AYR68_07525 PF02896 PEP-utilising enzyme, TIM barrel domain AYR68_07525 PF05524 PEP-utilising enzyme, N-terminal AYR68_07530 PF12146 Putative lysophospholipase AYR68_07545 PF03928 Domain of unknown function (DUF336) AYR68_07550 PF05525 AYR68_07550 AYR68_07555 PF00557 Metallopeptidase family M24 AYR68_07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_07560 PF03466 LysR substrate binding domain AYR68_07570 PF00462 Glutaredoxin AYR68_07575 PF00202 Aminotransferase class-III AYR68_07580 PF00571 CBS domain AYR68_07585 PF11042 AYR68_07585 AYR68_07605 PF00448 SRP54-type protein, GTPase domain AYR68_07605 PF02881 SRP54-type protein, helical bundle domain AYR68_07610 PF00881 Nitroreductase family AYR68_07615 PF09829 AYR68_07615 AYR68_07620 PF00583 Acetyltransferase (GNAT) family AYR68_07625 PF09600 AYR68_07625 AYR68_07630 PF08173 AYR68_07630 AYR68_07635 PF02322 AYR68_07635 AYR68_07640 PF01654 AYR68_07640 AYR68_07650 PF07290 AYR68_07650 AYR68_07655 PF00355 Rieske [2Fe-2S] domain AYR68_07660 PF00294 pfkB family carbohydrate kinase AYR68_07665 PF00593 TonB dependent receptor AYR68_07665 PF07715 TonB-dependent Receptor Plug Domain AYR68_07675 PF02253 Phospholipase A1 AYR68_07680 PF02386 Cation transport protein AYR68_07685 PF02254 TrkA-N domain AYR68_07690 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_07690 PF00585 C-terminal regulatory domain of Threonine dehydratase AYR68_07695 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AYR68_07700 PF01863 Protein of unknown function DUF45 AYR68_07710 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYR68_07710 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYR68_07720 PF02617 ATP-dependent Clp protease adaptor protein ClpS AYR68_07725 PF00004 ATPase family associated with various cellular activities (AAA) AYR68_07725 PF02861 Clp amino terminal domain AYR68_07725 PF07724 AAA domain (Cdc48 subfamily) AYR68_07725 PF10431 C-terminal, D2-small domain, of ClpB protein AYR68_07730 PF02694 AYR68_07730 AYR68_07735 PF00793 DAHP synthetase I family AYR68_07740 PF12697 Alpha/beta hydrolase family AYR68_07745 PF03551 Transcriptional regulator PadR-like family AYR68_07745 PF10400 Virulence activator alpha C-term AYR68_07750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR68_07750 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_07755 PF12680 SnoaL-like domain AYR68_07760 PF13472 GDSL-like Lipase/Acylhydrolase family AYR68_07765 PF12146 Putative lysophospholipase AYR68_07770 PF10118 AYR68_07770 AYR68_07780 PF00117 Glutamine amidotransferase class-I AYR68_07780 PF06418 CTP synthase N-terminus AYR68_07785 PF00793 DAHP synthetase I family AYR68_07790 PF00113 Enolase, C-terminal TIM barrel domain AYR68_07790 PF03952 Enolase, N-terminal domain AYR68_07795 PF04239 Protein of unknown function (DUF421) AYR68_07800 PF04977 Septum formation initiator AYR68_07805 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AYR68_07810 PF01144 Coenzyme A transferase AYR68_07815 PF01144 Coenzyme A transferase AYR68_07820 PF00108 Thiolase, N-terminal domain AYR68_07820 PF02803 Thiolase, C-terminal domain AYR68_07825 PF00206 Lyase AYR68_07825 PF10397 Adenylosuccinate lyase C-terminus AYR68_07830 PF00561 alpha/beta hydrolase fold AYR68_07835 PF07690 Major Facilitator Superfamily AYR68_07840 PF02627 Carboxymuconolactone decarboxylase family AYR68_07845 PF00775 Dioxygenase AYR68_07845 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AYR68_07850 PF00775 Dioxygenase AYR68_07855 PF01487 Type I 3-dehydroquinase AYR68_07860 PF13229 Right handed beta helix region AYR68_07865 PF04966 Carbohydrate-selective porin, OprB family AYR68_07870 PF01011 PQQ enzyme repeat AYR68_07880 PF04143 AYR68_07880 AYR68_07885 PF04143 AYR68_07885 AYR68_07890 PF00753 Metallo-beta-lactamase superfamily AYR68_07895 PF01614 Bacterial transcriptional regulator AYR68_07895 PF09339 IclR helix-turn-helix domain AYR68_07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_07900 PF03466 LysR substrate binding domain AYR68_07905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_07905 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_07905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_07910 PF01636 Phosphotransferase enzyme family AYR68_07915 PF00300 Histidine phosphatase superfamily (branch 1) AYR68_07920 PF00106 short chain dehydrogenase AYR68_07925 PF03573 outer membrane porin, OprD family AYR68_07930 PF07690 Major Facilitator Superfamily AYR68_07935 PF01047 MarR family AYR68_07940 PF01425 Amidase AYR68_07945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_07945 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR68_07955 PF13577 SnoaL-like domain AYR68_07960 PF00355 Rieske [2Fe-2S] domain AYR68_07960 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR68_07965 PF00866 Ring hydroxylating beta subunit AYR68_07970 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_07975 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR68_07975 PF00175 Oxidoreductase NAD-binding domain AYR68_07975 PF00970 Oxidoreductase FAD-binding domain AYR68_07980 PF01613 Flavin reductase like domain AYR68_07985 PF12833 Helix-turn-helix domain AYR68_07985 PF14525 AYR68_07985 AYR68_07990 PF01179 Copper amine oxidase, enzyme domain AYR68_07990 PF02727 Copper amine oxidase, N2 domain AYR68_07990 PF02728 Copper amine oxidase, N3 domain AYR68_07990 PF07833 Copper amine oxidase N-terminal domain AYR68_08000 PF00171 Aldehyde dehydrogenase family AYR68_08005 PF01804 Penicillin amidase AYR68_08010 PF00561 alpha/beta hydrolase fold AYR68_08015 PF00108 Thiolase, N-terminal domain AYR68_08015 PF02803 Thiolase, C-terminal domain AYR68_08020 PF01144 Coenzyme A transferase AYR68_08025 PF01144 Coenzyme A transferase AYR68_08030 PF00775 Dioxygenase AYR68_08030 PF04444 Catechol dioxygenase N terminus AYR68_08035 PF02426 Muconolactone delta-isomerase AYR68_08040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYR68_08040 PF13378 Enolase C-terminal domain-like AYR68_08045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_08045 PF03466 LysR substrate binding domain AYR68_08050 PF09694 AYR68_08050 AYR68_08055 PF00392 Bacterial regulatory proteins, gntR family AYR68_08055 PF07729 FCD domain AYR68_08060 PF00920 Dehydratase family AYR68_08065 PF07690 Major Facilitator Superfamily AYR68_08075 PF00171 Aldehyde dehydrogenase family AYR68_08080 PF01636 Phosphotransferase enzyme family AYR68_08090 PF00300 Histidine phosphatase superfamily (branch 1) AYR68_08095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_08095 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_08095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_08100 PF00106 short chain dehydrogenase AYR68_08105 PF00158 Sigma-54 interaction domain AYR68_08105 PF02954 Bacterial regulatory protein, Fis family AYR68_08105 PF06506 Propionate catabolism activator AYR68_08110 PF00501 AMP-binding enzyme AYR68_08110 PF13193 AMP-binding enzyme C-terminal domain AYR68_08115 PF04341 AYR68_08115 AYR68_08120 PF00474 Sodium:solute symporter family AYR68_08125 PF00107 Zinc-binding dehydrogenase AYR68_08125 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_08130 PF00171 Aldehyde dehydrogenase family AYR68_08135 PF06314 Acetoacetate decarboxylase (ADC) AYR68_08140 PF00561 alpha/beta hydrolase fold AYR68_08145 PF00199 Catalase AYR68_08145 PF06628 Catalase-related immune-responsive AYR68_08160 PF01965 DJ-1/PfpI family AYR68_08165 PF07859 alpha/beta hydrolase fold AYR68_08170 PF01047 MarR family AYR68_08175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR68_08180 PF03435 Saccharopine dehydrogenase AYR68_08185 PF01872 RibD C-terminal domain AYR68_08190 PF13411 MerR HTH family regulatory protein AYR68_08195 PF01965 DJ-1/PfpI family AYR68_08200 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_08205 PF02082 Transcriptional regulator AYR68_08210 PF12706 Beta-lactamase superfamily domain AYR68_08215 PF00440 Bacterial regulatory proteins, tetR family AYR68_08220 PF03992 Antibiotic biosynthesis monooxygenase AYR68_08225 PF00857 Isochorismatase family AYR68_08230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_08230 PF03466 LysR substrate binding domain AYR68_08235 PF07995 Glucose / Sorbosone dehydrogenase AYR68_08240 PF00999 Sodium/hydrogen exchanger family AYR68_08240 PF02254 TrkA-N domain AYR68_08250 PF01546 Peptidase family M20/M25/M40 AYR68_08250 PF07687 Peptidase dimerisation domain AYR68_08255 PF00440 Bacterial regulatory proteins, tetR family AYR68_08260 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AYR68_08260 PF08479 POTRA domain, ShlB-type AYR68_08260 PF17287 AYR68_08260 AYR68_08265 PF04829 AYR68_08265 AYR68_08265 PF04830 AYR68_08265 AYR68_08265 PF05860 haemagglutination activity domain AYR68_08265 PF13018 AYR68_08265 AYR68_08280 PF07690 Major Facilitator Superfamily AYR68_08285 PF04909 Amidohydrolase AYR68_08290 PF07158 AYR68_08290 AYR68_08295 PF00392 Bacterial regulatory proteins, gntR family AYR68_08295 PF07702 UTRA domain AYR68_08300 PF08450 SMP-30/Gluconolaconase/LRE-like region AYR68_08305 PF07690 Major Facilitator Superfamily AYR68_08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_08310 PF03466 LysR substrate binding domain AYR68_08315 PF04657 AYR68_08315 AYR68_08320 PF04657 AYR68_08320 AYR68_08325 PF01614 Bacterial transcriptional regulator AYR68_08325 PF09339 IclR helix-turn-helix domain AYR68_08330 PF07690 Major Facilitator Superfamily AYR68_08335 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR68_08335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR68_08340 PF03737 Demethylmenaquinone methyltransferase AYR68_08350 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AYR68_08355 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AYR68_08365 PF01527 Transposase AYR68_08370 PF05717 AYR68_08370 AYR68_08375 PF03050 AYR68_08375 AYR68_08375 PF13005 AYR68_08375 AYR68_08375 PF13007 AYR68_08375 AYR68_08375 PF13817 AYR68_08375 AYR68_08385 PF07690 Major Facilitator Superfamily AYR68_08390 PF00440 Bacterial regulatory proteins, tetR family AYR68_08390 PF14246 AefR-like transcriptional repressor, C-terminal region AYR68_08395 PF00171 Aldehyde dehydrogenase family AYR68_08400 PF00920 Dehydratase family AYR68_08405 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYR68_08410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_08410 PF03466 LysR substrate binding domain AYR68_08415 PF01370 NAD dependent epimerase/dehydratase family AYR68_08420 PF07690 Major Facilitator Superfamily AYR68_08425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR68_08425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR68_08430 PF06719 AYR68_08430 AYR68_08430 PF12833 Helix-turn-helix domain AYR68_08435 PF07883 Cupin domain AYR68_08440 PF02627 Carboxymuconolactone decarboxylase family AYR68_08445 PF00107 Zinc-binding dehydrogenase AYR68_08445 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_08450 PF01497 Periplasmic binding protein AYR68_08455 PF01032 FecCD transport family AYR68_08460 PF00005 ABC transporter AYR68_08465 PF00583 Acetyltransferase (GNAT) family AYR68_08470 PF02311 AraC-like ligand binding domain AYR68_08470 PF12833 Helix-turn-helix domain AYR68_08475 PF01925 AYR68_08475 AYR68_08480 PF00156 Phosphoribosyl transferase domain AYR68_08485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYR68_08490 PF00293 NUDIX domain AYR68_08495 PF02219 Methylenetetrahydrofolate reductase AYR68_08495 PF12225 AYR68_08495 AYR68_08555 PF00196 Bacterial regulatory proteins, luxR family AYR68_08560 PF01425 Amidase AYR68_08565 PF13437 HlyD family secretion protein AYR68_08565 PF13533 Biotin-lipoyl like AYR68_08570 PF07690 Major Facilitator Superfamily AYR68_08580 PF03321 GH3 auxin-responsive promoter AYR68_08585 PF02321 Outer membrane efflux protein AYR68_08595 PF01975 Survival protein SurE AYR68_08605 PF13328 HD domain AYR68_08610 PF01381 Helix-turn-helix AYR68_08615 PF00440 Bacterial regulatory proteins, tetR family AYR68_08625 PF03374 AYR68_08625 AYR68_08635 PF05488 PAAR motif AYR68_08645 PF00106 short chain dehydrogenase AYR68_08650 PF00106 short chain dehydrogenase AYR68_08655 PF12146 Putative lysophospholipase AYR68_08670 PF16576 AYR68_08670 AYR68_08675 PF00873 AcrB/AcrD/AcrF family AYR68_08680 PF02321 Outer membrane efflux protein AYR68_08685 PF12146 Putative lysophospholipase AYR68_08690 PF13738 Pyridine nucleotide-disulphide oxidoreductase AYR68_08695 PF01593 Flavin containing amine oxidoreductase AYR68_08700 PF03435 Saccharopine dehydrogenase AYR68_08705 PF00440 Bacterial regulatory proteins, tetR family AYR68_08710 PF01266 FAD dependent oxidoreductase AYR68_08730 PF16970 AYR68_08730 AYR68_08735 PF01609 Transposase DDE domain AYR68_08740 PF01609 Transposase DDE domain AYR68_08745 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYR68_08745 PF02753 Pili assembly chaperone PapD, C-terminal domain AYR68_08750 PF00577 Outer membrane usher protein AYR68_08750 PF13953 PapC C-terminal domain AYR68_08750 PF13954 PapC N-terminal domain AYR68_08755 PF00419 Fimbrial protein AYR68_08760 PF16223 AYR68_08760 AYR68_08765 PF00107 Zinc-binding dehydrogenase AYR68_08765 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_08775 PF00199 Catalase AYR68_08790 PF13091 PLD-like domain AYR68_08810 PF01244 Membrane dipeptidase (Peptidase family M19) AYR68_08815 PF04055 Radical SAM superfamily AYR68_08815 PF13186 Iron-sulfur cluster-binding domain AYR68_08815 PF13353 4Fe-4S single cluster domain AYR68_08820 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AYR68_08825 PF03070 TENA/THI-4/PQQC family AYR68_08830 PF12706 Beta-lactamase superfamily domain AYR68_08835 PF02503 Polyphosphate kinase middle domain AYR68_08835 PF13089 Polyphosphate kinase N-terminal domain AYR68_08835 PF13090 Polyphosphate kinase C-terminal domain AYR68_08840 PF00149 Calcineurin-like phosphoesterase AYR68_08840 PF02872 5'-nucleotidase, C-terminal domain AYR68_08845 PF01475 Ferric uptake regulator family AYR68_08850 PF00857 Isochorismatase family AYR68_08855 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_08860 PF00005 ABC transporter AYR68_08865 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_08870 PF13531 Bacterial extracellular solute-binding protein AYR68_08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_08880 PF00355 Rieske [2Fe-2S] domain AYR68_08880 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR68_08885 PF00866 Ring hydroxylating beta subunit AYR68_08890 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR68_08890 PF00175 Oxidoreductase NAD-binding domain AYR68_08890 PF00970 Oxidoreductase FAD-binding domain AYR68_08895 PF12833 Helix-turn-helix domain AYR68_08895 PF14525 AYR68_08895 AYR68_08900 PF13557 AYR68_08900 AYR68_08905 PF01613 Flavin reductase like domain AYR68_08915 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_08920 PF01738 Dienelactone hydrolase family AYR68_08925 PF07690 Major Facilitator Superfamily AYR68_08930 PF12833 Helix-turn-helix domain AYR68_08930 PF14525 AYR68_08930 AYR68_08935 PF01609 Transposase DDE domain AYR68_08940 PF01609 Transposase DDE domain AYR68_08945 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_08950 PF02447 AYR68_08950 AYR68_08960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_08960 PF03466 LysR substrate binding domain AYR68_08965 PF01144 Coenzyme A transferase AYR68_08970 PF01144 Coenzyme A transferase AYR68_08975 PF02667 AYR68_08975 AYR68_08980 PF00108 Thiolase, N-terminal domain AYR68_08980 PF02803 Thiolase, C-terminal domain AYR68_08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_08985 PF03466 LysR substrate binding domain AYR68_08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_08990 PF03466 LysR substrate binding domain AYR68_09005 PF00206 Lyase AYR68_09005 PF10415 Fumarase C C-terminus AYR68_09010 PF00593 TonB dependent receptor AYR68_09010 PF07715 TonB-dependent Receptor Plug Domain AYR68_09015 PF00083 Sugar (and other) transporter AYR68_09015 PF07690 Major Facilitator Superfamily AYR68_09020 PF06155 Protein of unknown function (DUF971) AYR68_09025 PF13646 HEAT repeats AYR68_09030 PF00005 ABC transporter AYR68_09035 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_09040 PF13379 NMT1-like family AYR68_09045 PF12838 4Fe-4S dicluster domain AYR68_09050 PF00890 FAD binding domain AYR68_09050 PF02910 Fumarate reductase flavoprotein C-term AYR68_09055 PF00392 Bacterial regulatory proteins, gntR family AYR68_09055 PF07702 UTRA domain AYR68_09060 PF02417 AYR68_09060 AYR68_09065 PF02525 Flavodoxin-like fold AYR68_09070 PF01638 HxlR-like helix-turn-helix AYR68_09075 PF12833 Helix-turn-helix domain AYR68_09080 PF00892 EamA-like transporter family AYR68_09085 PF00742 Homoserine dehydrogenase AYR68_09085 PF03447 Homoserine dehydrogenase, NAD binding domain AYR68_09090 PF01925 AYR68_09090 AYR68_09095 PF04273 Putative phosphatase (DUF442) AYR68_09095 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_09100 PF00753 Metallo-beta-lactamase superfamily AYR68_09105 PF00158 Sigma-54 interaction domain AYR68_09105 PF02954 Bacterial regulatory protein, Fis family AYR68_09110 PF01062 AYR68_09110 AYR68_09115 PF00107 Zinc-binding dehydrogenase AYR68_09115 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_09120 PF00106 short chain dehydrogenase AYR68_09125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR68_09125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_09130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR68_09130 PF00364 Biotin-requiring enzyme AYR68_09130 PF02817 e3 binding domain AYR68_09135 PF02779 Transketolase, pyrimidine binding domain AYR68_09135 PF02780 Transketolase, C-terminal domain AYR68_09140 PF00676 Dehydrogenase E1 component AYR68_09145 PF04055 Radical SAM superfamily AYR68_09155 PF14518 Iron-containing redox enzyme AYR68_09160 PF00990 GGDEF domain AYR68_09165 PF01264 Chorismate synthase AYR68_09170 PF05175 Methyltransferase small domain AYR68_09175 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_09180 PF05762 VWA domain containing CoxE-like protein AYR68_09185 PF00004 ATPase family associated with various cellular activities (AAA) AYR68_09195 PF05166 YcgL domain AYR68_09215 PF00570 HRDC domain AYR68_09215 PF01612 3'-5' exonuclease AYR68_09220 PF02132 RecR protein AYR68_09220 PF13662 Toprim domain AYR68_09225 PF02575 YbaB/EbfC DNA-binding family AYR68_09235 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR68_09240 PF00561 alpha/beta hydrolase fold AYR68_09245 PF08241 Methyltransferase domain AYR68_09250 PF13103 TonB C terminal AYR68_09265 PF04828 Glutathione-dependent formaldehyde-activating enzyme AYR68_09270 PF13308 YARHG domain AYR68_09275 PF01230 HIT domain AYR68_09280 PF13609 Gram-negative porin AYR68_09285 PF06078 Bacterial protein of unknown function (DUF937) AYR68_09295 PF10977 AYR68_09295 AYR68_09300 PF12698 ABC-2 family transporter protein AYR68_09305 PF12698 ABC-2 family transporter protein AYR68_09310 PF00005 ABC transporter AYR68_09315 PF13437 HlyD family secretion protein AYR68_09315 PF13533 Biotin-lipoyl like AYR68_09320 PF00440 Bacterial regulatory proteins, tetR family AYR68_09320 PF09209 Domain of unknown function (DUF1956) AYR68_09325 PF02684 AYR68_09325 AYR68_09330 PF00593 TonB dependent receptor AYR68_09330 PF07715 TonB-dependent Receptor Plug Domain AYR68_09340 PF03929 AYR68_09340 AYR68_09350 PF01925 AYR68_09350 AYR68_09355 PF00793 DAHP synthetase I family AYR68_09360 PF02654 AYR68_09360 AYR68_09365 PF00328 Histidine phosphatase superfamily (branch 2) AYR68_09370 PF00300 Histidine phosphatase superfamily (branch 1) AYR68_09375 PF02277 Phosphoribosyltransferase AYR68_09380 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AYR68_09385 PF13563 2'-5' RNA ligase superfamily AYR68_09390 PF08125 Mannitol dehydrogenase C-terminal domain AYR68_09390 PF13419 Haloacid dehalogenase-like hydrolase AYR68_09395 PF13523 Acetyltransferase (GNAT) domain AYR68_09405 PF03929 AYR68_09405 AYR68_09415 PF00593 TonB dependent receptor AYR68_09415 PF07715 TonB-dependent Receptor Plug Domain AYR68_09420 PF03737 Demethylmenaquinone methyltransferase AYR68_09425 PF11575 AYR68_09425 AYR68_09430 PF04183 IucA / IucC family AYR68_09430 PF06276 Ferric iron reductase FhuF-like transporter AYR68_09435 PF04183 IucA / IucC family AYR68_09435 PF06276 Ferric iron reductase FhuF-like transporter AYR68_09440 PF07690 Major Facilitator Superfamily AYR68_09445 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYR68_09450 PF04183 IucA / IucC family AYR68_09450 PF06276 Ferric iron reductase FhuF-like transporter AYR68_09455 PF04073 Aminoacyl-tRNA editing domain AYR68_09465 PF03109 AYR68_09465 AYR68_09470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_09470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_09475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_09475 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_09480 PF00487 AYR68_09480 AYR68_09485 PF12833 Helix-turn-helix domain AYR68_09485 PF12852 Cupin AYR68_09490 PF13616 PPIC-type PPIASE domain AYR68_09490 PF13624 SurA N-terminal domain AYR68_09495 PF00216 Bacterial DNA-binding protein AYR68_09500 PF05597 AYR68_09500 AYR68_09510 PF02082 Transcriptional regulator AYR68_09515 PF00266 Aminotransferase class-V AYR68_09520 PF01592 NifU-like N terminal domain AYR68_09525 PF01521 Iron-sulphur cluster biosynthesis AYR68_09530 PF00226 DnaJ domain AYR68_09530 PF07743 HSCB C-terminal oligomerisation domain AYR68_09535 PF00012 Hsp70 protein AYR68_09540 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR68_09545 PF00211 Adenylate and Guanylate cyclase catalytic domain AYR68_09550 PF01230 HIT domain AYR68_09555 PF00270 DEAD/DEAH box helicase AYR68_09555 PF00271 Helicase conserved C-terminal domain AYR68_09555 PF02559 CarD-like/TRCF domain AYR68_09555 PF03461 TRCF domain AYR68_09565 PF04261 Dyp-type peroxidase family AYR68_09570 PF13417 Glutathione S-transferase, N-terminal domain AYR68_09575 PF03737 Demethylmenaquinone methyltransferase AYR68_09580 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYR68_09585 PF01649 Ribosomal protein S20 AYR68_09590 PF00300 Histidine phosphatase superfamily (branch 1) AYR68_09595 PF00459 Inositol monophosphatase family AYR68_09605 PF02586 Uncharacterised ACR, COG2135 AYR68_09610 PF00005 ABC transporter AYR68_09610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYR68_09615 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_09615 PF12911 AYR68_09615 AYR68_09620 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_09625 PF01432 Peptidase family M3 AYR68_09630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYR68_09635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYR68_09640 PF00593 TonB dependent receptor AYR68_09640 PF07715 TonB-dependent Receptor Plug Domain AYR68_09645 PF03544 Gram-negative bacterial TonB protein C-terminal AYR68_09650 PF01618 AYR68_09650 AYR68_09655 PF02472 Biopolymer transport protein ExbD/TolR AYR68_09660 PF02472 Biopolymer transport protein ExbD/TolR AYR68_09665 PF00583 Acetyltransferase (GNAT) family AYR68_09670 PF01274 Malate synthase AYR68_09675 PF03969 AFG1-like ATPase AYR68_09680 PF12625 AYR68_09680 AYR68_09680 PF12833 Helix-turn-helix domain AYR68_09685 PF00743 Flavin-binding monooxygenase-like AYR68_09690 PF03956 AYR68_09690 AYR68_09695 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AYR68_09700 PF06305 AYR68_09700 AYR68_09705 PF00216 Bacterial DNA-binding protein AYR68_09710 PF00575 S1 RNA binding domain AYR68_09715 PF02224 Cytidylate kinase AYR68_09720 PF10604 Polyketide cyclase / dehydrase and lipid transport AYR68_09725 PF14437 AYR68_09725 AYR68_09730 PF16113 AYR68_09730 AYR68_09735 PF03167 Uracil DNA glycosylase superfamily AYR68_09740 PF01242 6-pyruvoyl tetrahydropterin synthase AYR68_09745 PF03934 Type II secretion system (T2SS), protein K AYR68_09750 PF07963 Prokaryotic N-terminal methylation motif AYR68_09750 PF11612 Type II secretion system (T2SS), protein J AYR68_09755 PF02501 Type II secretion system (T2SS), protein I AYR68_09755 PF07963 Prokaryotic N-terminal methylation motif AYR68_09760 PF07963 Prokaryotic N-terminal methylation motif AYR68_09765 PF00440 Bacterial regulatory proteins, tetR family AYR68_09770 PF01026 TatD related DNase AYR68_09775 PF07238 PilZ domain AYR68_09780 PF13177 DNA polymerase III, delta subunit AYR68_09785 PF02348 Cytidylyltransferase AYR68_09790 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AYR68_09795 PF00005 ABC transporter AYR68_09795 PF00664 ABC transporter transmembrane region AYR68_09800 PF02472 Biopolymer transport protein ExbD/TolR AYR68_09805 PF01618 AYR68_09805 AYR68_09810 PF02195 ParB-like nuclease domain AYR68_09815 PF13614 AAA domain AYR68_09820 PF02527 rRNA small subunit methyltransferase G AYR68_09825 PF00483 Nucleotidyl transferase AYR68_09830 PF01636 Phosphotransferase enzyme family AYR68_09835 PF03968 OstA-like protein AYR68_09835 PF04453 Organic solvent tolerance protein AYR68_09840 PF00639 PPIC-type PPIASE domain AYR68_09840 PF09312 SurA N-terminal domain AYR68_09840 PF13616 PPIC-type PPIASE domain AYR68_09845 PF01116 Fructose-bisphosphate aldolase class-II AYR68_09855 PF00162 Phosphoglycerate kinase AYR68_09860 PF09996 Uncharacterized protein conserved in bacteria (DUF2237) AYR68_09865 PF02545 Maf-like protein AYR68_09870 PF08007 Cupin superfamily protein AYR68_09875 PF00440 Bacterial regulatory proteins, tetR family AYR68_09880 PF01022 Bacterial regulatory protein, arsR family AYR68_09885 PF00375 Sodium:dicarboxylate symporter family AYR68_09890 PF06912 AYR68_09890 AYR68_09895 PF09831 AYR68_09895 AYR68_09900 PF00005 ABC transporter AYR68_09900 PF00664 ABC transporter transmembrane region AYR68_09905 PF01575 MaoC like domain AYR68_09910 PF12625 AYR68_09910 AYR68_09910 PF12833 Helix-turn-helix domain AYR68_09915 PF01597 Glycine cleavage H-protein AYR68_09920 PF02146 Sir2 family AYR68_09925 PF00474 Sodium:solute symporter family AYR68_09930 PF01037 AsnC family AYR68_09930 PF13404 AsnC-type helix-turn-helix domain AYR68_09935 PF00171 Aldehyde dehydrogenase family AYR68_09935 PF01619 Proline dehydrogenase AYR68_09935 PF14850 DNA-binding domain of Proline dehydrogenase AYR68_09940 PF04229 GrpB protein AYR68_09945 PF05958 tRNA (Uracil-5-)-methyltransferase AYR68_09955 PF09992 Predicted periplasmic protein (DUF2233) AYR68_09960 PF04970 Lecithin retinol acyltransferase AYR68_09965 PF04264 YceI-like domain AYR68_09970 PF02566 OsmC-like protein AYR68_09975 PF00456 Transketolase, thiamine diphosphate binding domain AYR68_09975 PF02779 Transketolase, pyrimidine binding domain AYR68_09975 PF02780 Transketolase, C-terminal domain AYR68_09980 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYR68_09980 PF02772 S-adenosylmethionine synthetase, central domain AYR68_09980 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYR68_09995 PF04186 AYR68_09995 AYR68_10000 PF00905 Penicillin binding protein transpeptidase domain AYR68_10005 PF13420 Acetyltransferase (GNAT) domain AYR68_10010 PF01381 Helix-turn-helix AYR68_10015 PF02075 Crossover junction endodeoxyribonuclease RuvC AYR68_10020 PF01256 Carbohydrate kinase AYR68_10020 PF03853 YjeF-related protein N-terminus AYR68_10025 PF08331 AYR68_10025 AYR68_10025 PF13484 AYR68_10025 AYR68_10030 PF04055 Radical SAM superfamily AYR68_10030 PF06968 Biotin and Thiamin Synthesis associated domain AYR68_10045 PF16970 AYR68_10045 AYR68_10050 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYR68_10050 PF02753 Pili assembly chaperone PapD, C-terminal domain AYR68_10055 PF00577 Outer membrane usher protein AYR68_10055 PF13953 PapC C-terminal domain AYR68_10055 PF13954 PapC N-terminal domain AYR68_10060 PF00419 Fimbrial protein AYR68_10070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_10070 PF03466 LysR substrate binding domain AYR68_10075 PF00892 EamA-like transporter family AYR68_10085 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYR68_10090 PF05232 AYR68_10090 AYR68_10095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_10095 PF03466 LysR substrate binding domain AYR68_10105 PF01609 Transposase DDE domain AYR68_10110 PF01609 Transposase DDE domain AYR68_10130 PF00440 Bacterial regulatory proteins, tetR family AYR68_10135 PF01553 Acyltransferase AYR68_10140 PF01709 Transcriptional regulator AYR68_10145 PF01037 AsnC family AYR68_10145 PF13412 Winged helix-turn-helix DNA-binding AYR68_10155 PF00005 ABC transporter AYR68_10160 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_10165 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_10170 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR68_10175 PF13417 Glutathione S-transferase, N-terminal domain AYR68_10175 PF14497 Glutathione S-transferase, C-terminal domain AYR68_10180 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_10180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_10180 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR68_10185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_10185 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR68_10190 PF00296 Luciferase-like monooxygenase AYR68_10195 PF03180 NLPA lipoprotein AYR68_10200 PF03180 NLPA lipoprotein AYR68_10205 PF00005 ABC transporter AYR68_10205 PF09383 NIL domain AYR68_10210 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_10215 PF01926 50S ribosome-binding GTPase AYR68_10215 PF06071 Protein of unknown function (DUF933) AYR68_10220 PF06127 AYR68_10220 AYR68_10225 PF00027 Cyclic nucleotide-binding domain AYR68_10225 PF13545 Crp-like helix-turn-helix domain AYR68_10240 PF03591 AYR68_10240 AYR68_10245 PF05437 AYR68_10245 AYR68_10250 PF14552 Tautomerase enzyme AYR68_10255 PF02222 ATP-grasp domain AYR68_10260 PF01909 Nucleotidyltransferase domain AYR68_10260 PF01966 HD domain AYR68_10260 PF08335 GlnD PII-uridylyltransferase AYR68_10265 PF00155 Aminotransferase class I and II AYR68_10270 PF01810 AYR68_10270 AYR68_10275 PF02311 AraC-like ligand binding domain AYR68_10275 PF12833 Helix-turn-helix domain AYR68_10280 PF00255 Glutathione peroxidase AYR68_10285 PF01641 SelR domain AYR68_10290 PF00155 Aminotransferase class I and II AYR68_10295 PF00375 Sodium:dicarboxylate symporter family AYR68_10300 PF00710 Asparaginase AYR68_10305 PF02811 PHP domain AYR68_10305 PF07733 Bacterial DNA polymerase III alpha subunit AYR68_10305 PF14579 Helix-hairpin-helix motif AYR68_10310 PF00588 SpoU rRNA Methylase family AYR68_10315 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_10315 PF06426 Serine acetyltransferase, N-terminal AYR68_10330 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_10330 PF13192 Thioredoxin domain AYR68_10335 PF02417 AYR68_10335 AYR68_10340 PF02417 AYR68_10340 AYR68_10345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_10345 PF03466 LysR substrate binding domain AYR68_10355 PF13610 AYR68_10355 AYR68_10375 PF05666 AYR68_10375 AYR68_10380 PF03050 AYR68_10380 AYR68_10380 PF13005 AYR68_10380 AYR68_10380 PF13007 AYR68_10380 AYR68_10380 PF13817 AYR68_10380 AYR68_10385 PF05717 AYR68_10385 AYR68_10390 PF01527 Transposase AYR68_10400 PF01479 S4 domain AYR68_10405 PF00154 recA bacterial DNA recombination protein AYR68_10410 PF02631 RecX family AYR68_10420 PF13174 Tetratricopeptide repeat AYR68_10420 PF16331 AYR68_10420 AYR68_10425 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_10425 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AYR68_10430 PF07977 FabA-like domain AYR68_10435 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_10435 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYR68_10435 PF14602 Hexapeptide repeat of succinyl-transferase AYR68_10440 PF03938 Outer membrane protein (OmpH-like) AYR68_10445 PF01103 Surface antigen AYR68_10445 PF07244 Surface antigen variable number repeat AYR68_10450 PF02163 Peptidase family M50 AYR68_10450 PF13180 PDZ domain AYR68_10455 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AYR68_10455 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AYR68_10455 PF13288 DXP reductoisomerase C-terminal domain AYR68_10460 PF01148 Cytidylyltransferase family AYR68_10465 PF01255 Putative undecaprenyl diphosphate synthase AYR68_10470 PF01765 Ribosome recycling factor AYR68_10475 PF00696 Amino acid kinase family AYR68_10480 PF00919 Uncharacterized protein family UPF0004 AYR68_10480 PF04055 Radical SAM superfamily AYR68_10490 PF01609 Transposase DDE domain AYR68_10495 PF01609 Transposase DDE domain AYR68_10500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_10505 PF00072 Response regulator receiver domain AYR68_10505 PF00158 Sigma-54 interaction domain AYR68_10505 PF02954 Bacterial regulatory protein, Fis family AYR68_10510 PF00440 Bacterial regulatory proteins, tetR family AYR68_10515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYR68_10515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYR68_10525 PF02542 YgbB family AYR68_10535 PF01266 FAD dependent oxidoreductase AYR68_10545 PF01609 Transposase DDE domain AYR68_10550 PF01609 Transposase DDE domain AYR68_10565 PF00206 Lyase AYR68_10565 PF10415 Fumarase C C-terminus AYR68_10570 PF01370 NAD dependent epimerase/dehydratase family AYR68_10575 PF02635 DsrE/DsrF-like family AYR68_10590 PF04358 DsrC like protein AYR68_10595 PF00892 EamA-like transporter family AYR68_10600 PF00155 Aminotransferase class I and II AYR68_10600 PF00392 Bacterial regulatory proteins, gntR family AYR68_10605 PF01638 HxlR-like helix-turn-helix AYR68_10610 PF00994 Probable molybdopterin binding domain AYR68_10610 PF03453 MoeA N-terminal region (domain I and II) AYR68_10610 PF03454 MoeA C-terminal region (domain IV) AYR68_10615 PF00994 Probable molybdopterin binding domain AYR68_10615 PF01967 MoaC family AYR68_10620 PF02391 MoaE protein AYR68_10625 PF02597 ThiS family AYR68_10630 PF04055 Radical SAM superfamily AYR68_10630 PF06463 Molybdenum Cofactor Synthesis C AYR68_10630 PF13353 4Fe-4S single cluster domain AYR68_10635 PF00384 Molybdopterin oxidoreductase AYR68_10635 PF01568 Molydopterin dinucleotide binding domain AYR68_10635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR68_10640 PF12804 MobA-like NTP transferase domain AYR68_10645 PF00384 Molybdopterin oxidoreductase AYR68_10645 PF01568 Molydopterin dinucleotide binding domain AYR68_10645 PF04324 BFD-like [2Fe-2S] binding domain AYR68_10645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR68_10650 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_10650 PF13806 Rieske-like [2Fe-2S] domain AYR68_10655 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYR68_10655 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYR68_10655 PF04324 BFD-like [2Fe-2S] binding domain AYR68_10655 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_10665 PF00072 Response regulator receiver domain AYR68_10665 PF03861 ANTAR domain AYR68_10670 PF13379 NMT1-like family AYR68_10675 PF00817 impB/mucB/samB family AYR68_10675 PF11799 impB/mucB/samB family C-terminal domain AYR68_10675 PF13438 AYR68_10675 AYR68_10680 PF01220 Dehydroquinase class II AYR68_10685 PF00364 Biotin-requiring enzyme AYR68_10690 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AYR68_10690 PF02785 Biotin carboxylase C-terminal domain AYR68_10690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR68_10700 PF12832 MFS_1 like family AYR68_10705 PF14518 Iron-containing redox enzyme AYR68_10710 PF00440 Bacterial regulatory proteins, tetR family AYR68_10715 PF03929 AYR68_10715 AYR68_10725 PF12146 Putative lysophospholipase AYR68_10730 PF02698 DUF218 domain AYR68_10735 PF01565 FAD binding domain AYR68_10735 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AYR68_10740 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYR68_10745 PF10282 Lactonase, 7-bladed beta-propeller AYR68_10750 PF00465 Iron-containing alcohol dehydrogenase AYR68_10755 PF13279 Thioesterase-like superfamily AYR68_10760 PF04185 Phosphoesterase family AYR68_10760 PF05506 AYR68_10760 AYR68_10765 PF12169 DNA polymerase III subunits gamma and tau domain III AYR68_10765 PF13177 DNA polymerase III, delta subunit AYR68_10770 PF07690 Major Facilitator Superfamily AYR68_10775 PF00440 Bacterial regulatory proteins, tetR family AYR68_10780 PF00144 Beta-lactamase AYR68_10785 PF01575 MaoC like domain AYR68_10790 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_10795 PF00108 Thiolase, N-terminal domain AYR68_10795 PF02803 Thiolase, C-terminal domain AYR68_10800 PF05232 AYR68_10800 AYR68_10805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_10805 PF03466 LysR substrate binding domain AYR68_10810 PF00923 Transaldolase AYR68_10815 PF01810 AYR68_10815 AYR68_10820 PF01037 AsnC family AYR68_10820 PF13412 Winged helix-turn-helix DNA-binding AYR68_10825 PF03594 AYR68_10825 AYR68_10830 PF02308 AYR68_10830 AYR68_10835 PF00122 E1-E2 ATPase AYR68_10835 PF00690 Cation transporter/ATPase, N-terminus AYR68_10835 PF00702 haloacid dehalogenase-like hydrolase AYR68_10840 PF06271 AYR68_10840 AYR68_10855 PF00582 Universal stress protein family AYR68_10860 PF00005 ABC transporter AYR68_10875 PF03922 OmpW family AYR68_10880 PF00593 TonB dependent receptor AYR68_10880 PF07715 TonB-dependent Receptor Plug Domain AYR68_10885 PF13527 Acetyltransferase (GNAT) domain AYR68_10910 PF00924 Mechanosensitive ion channel AYR68_10915 PF00593 TonB dependent receptor AYR68_10915 PF07715 TonB-dependent Receptor Plug Domain AYR68_10920 PF00440 Bacterial regulatory proteins, tetR family AYR68_10930 PF01037 AsnC family AYR68_10930 PF13412 Winged helix-turn-helix DNA-binding AYR68_10935 PF01817 Chorismate mutase type II AYR68_10940 PF00106 short chain dehydrogenase AYR68_10945 PF00106 short chain dehydrogenase AYR68_10950 PF13417 Glutathione S-transferase, N-terminal domain AYR68_10950 PF14497 Glutathione S-transferase, C-terminal domain AYR68_10955 PF01433 Peptidase family M1 AYR68_10955 PF11940 Domain of unknown function (DUF3458) AYR68_10955 PF17432 AYR68_10955 AYR68_10970 PF02110 Hydroxyethylthiazole kinase family AYR68_10975 PF06445 GyrI-like small molecule binding domain AYR68_10975 PF12833 Helix-turn-helix domain AYR68_10980 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase AYR68_10985 PF05970 AYR68_10985 AYR68_10985 PF14493 AYR68_10985 AYR68_10990 PF00465 Iron-containing alcohol dehydrogenase AYR68_10995 PF12146 Putative lysophospholipase AYR68_11005 PF00171 Aldehyde dehydrogenase family AYR68_11010 PF13520 Amino acid permease AYR68_11015 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AYR68_11020 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AYR68_11025 PF00117 Glutamine amidotransferase class-I AYR68_11030 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR68_11030 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AYR68_11035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYR68_11040 PF00149 Calcineurin-like phosphoesterase AYR68_11050 PF00881 Nitroreductase family AYR68_11055 PF00892 EamA-like transporter family AYR68_11060 PF17209 AYR68_11060 AYR68_11065 PF01715 IPP transferase AYR68_11070 PF01119 DNA mismatch repair protein, C-terminal domain AYR68_11070 PF08676 MutL C terminal dimerisation domain AYR68_11070 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_11075 PF02367 Uncharacterised P-loop hydrolase UPF0079 AYR68_11080 PF00849 RNA pseudouridylate synthase AYR68_11085 PF04221 RelB antitoxin AYR68_11090 PF00583 Acetyltransferase (GNAT) family AYR68_11095 PF00849 RNA pseudouridylate synthase AYR68_11095 PF01479 S4 domain AYR68_11105 PF04284 AYR68_11105 AYR68_11110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_11110 PF03466 LysR substrate binding domain AYR68_11115 PF10670 AYR68_11115 AYR68_11125 PF07690 Major Facilitator Superfamily AYR68_11130 PF00520 Ion transport protein AYR68_11140 PF00330 Aconitase family (aconitate hydratase) AYR68_11140 PF06434 Aconitate hydratase 2 N-terminus AYR68_11140 PF11791 Aconitate B N-terminal domain AYR68_11150 PF04357 AYR68_11150 AYR68_11155 PF01103 Surface antigen AYR68_11155 PF07244 Surface antigen variable number repeat AYR68_11155 PF17243 AYR68_11155 AYR68_11160 PF07690 Major Facilitator Superfamily AYR68_11165 PF03232 AYR68_11165 AYR68_11170 PF10973 AYR68_11170 AYR68_11175 PF00120 Glutamine synthetase, catalytic domain AYR68_11180 PF00072 Response regulator receiver domain AYR68_11180 PF00486 Transcriptional regulatory protein, C terminal AYR68_11185 PF00512 His Kinase A (phospho-acceptor) domain AYR68_11185 PF00582 Universal stress protein family AYR68_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_11185 PF02702 Osmosensitive K+ channel His kinase sensor domain AYR68_11185 PF13493 Domain of unknown function (DUF4118) AYR68_11190 PF02669 AYR68_11190 AYR68_11195 PF00122 E1-E2 ATPase AYR68_11195 PF00702 haloacid dehalogenase-like hydrolase AYR68_11200 PF03814 AYR68_11200 AYR68_11205 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYR68_11210 PF02152 Dihydroneopterin aldolase AYR68_11215 PF03109 AYR68_11215 AYR68_11220 PF00899 ThiF family AYR68_11225 PF01613 Flavin reductase like domain AYR68_11230 PF00501 AMP-binding enzyme AYR68_11230 PF13193 AMP-binding enzyme C-terminal domain AYR68_11235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_11235 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_11235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_11240 PF00106 short chain dehydrogenase AYR68_11245 PF12625 AYR68_11245 AYR68_11250 PF01609 Transposase DDE domain AYR68_11255 PF01609 Transposase DDE domain AYR68_11265 PF09084 NMT1/THI5 like AYR68_11270 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_11275 PF05175 Methyltransferase small domain AYR68_11280 PF00472 RF-1 domain AYR68_11280 PF03462 PCRF domain AYR68_11285 PF17124 AYR68_11285 AYR68_11290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_11290 PF03466 LysR substrate binding domain AYR68_11305 PF00296 Luciferase-like monooxygenase AYR68_11315 PF13994 AYR68_11315 AYR68_11320 PF13641 Glycosyltransferase like family 2 AYR68_11325 PF01522 Polysaccharide deacetylase AYR68_11325 PF14883 Hypothetical glycosyl hydrolase family 13 AYR68_11335 PF03618 AYR68_11335 AYR68_11340 PF00391 PEP-utilising enzyme, mobile domain AYR68_11340 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYR68_11340 PF02896 PEP-utilising enzyme, TIM barrel domain AYR68_11345 PF06271 AYR68_11345 AYR68_11345 PF14237 AYR68_11345 AYR68_11350 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AYR68_11350 PF06481 COX Aromatic Rich Motif AYR68_11355 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYR68_11360 PF00510 Cytochrome c oxidase subunit III AYR68_11365 PF03626 AYR68_11365 AYR68_11370 PF01040 UbiA prenyltransferase family AYR68_11375 PF01250 Ribosomal protein S6 AYR68_11380 PF01084 Ribosomal protein S18 AYR68_11385 PF01281 Ribosomal protein L9, N-terminal domain AYR68_11385 PF03948 Ribosomal protein L9, C-terminal domain AYR68_11390 PF00772 DnaB-like helicase N terminal domain AYR68_11390 PF03796 DnaB-like helicase C terminal domain AYR68_11395 PF00842 Alanine racemase, C-terminal domain AYR68_11395 PF01168 Alanine racemase, N-terminal domain AYR68_11400 PF00227 Proteasome subunit AYR68_11405 PF01841 Transglutaminase-like superfamily AYR68_11405 PF08379 AYR68_11405 AYR68_11410 PF04168 AYR68_11410 AYR68_11415 PF14403 AYR68_11415 AYR68_11420 PF13280 AYR68_11420 AYR68_11425 PF01134 Glucose inhibited division protein A AYR68_11425 PF13932 GidA associated domain 3 AYR68_11435 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AYR68_11440 PF11906 AYR68_11440 AYR68_11445 PF02954 Bacterial regulatory protein, Fis family AYR68_11450 PF01808 AICARFT/IMPCHase bienzyme AYR68_11450 PF02142 MGS-like domain AYR68_11455 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AYR68_11455 PF02843 Phosphoribosylglycinamide synthetase, C domain AYR68_11455 PF02844 Phosphoribosylglycinamide synthetase, N domain AYR68_11460 PF03180 NLPA lipoprotein AYR68_11465 PF00005 ABC transporter AYR68_11465 PF09383 NIL domain AYR68_11470 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_11475 PF00753 Metallo-beta-lactamase superfamily AYR68_11475 PF16123 AYR68_11475 AYR68_11485 PF00375 Sodium:dicarboxylate symporter family AYR68_11490 PF00440 Bacterial regulatory proteins, tetR family AYR68_11490 PF16859 AYR68_11490 AYR68_11495 PF07690 Major Facilitator Superfamily AYR68_11500 PF13673 Acetyltransferase (GNAT) domain AYR68_11505 PF07995 Glucose / Sorbosone dehydrogenase AYR68_11510 PF00892 EamA-like transporter family AYR68_11515 PF01177 Asp/Glu/Hydantoin racemase AYR68_11520 PF03886 Protein of unknown function (DUF330) AYR68_11525 PF02470 AYR68_11525 AYR68_11530 PF04403 AYR68_11530 AYR68_11535 PF04403 AYR68_11535 AYR68_11540 PF02080 TrkA-C domain AYR68_11540 PF06826 AYR68_11540 AYR68_11545 PF00155 Aminotransferase class I and II AYR68_11550 PF00892 EamA-like transporter family AYR68_11555 PF00440 Bacterial regulatory proteins, tetR family AYR68_11565 PF00083 Sugar (and other) transporter AYR68_11565 PF08946 Osmosensory transporter coiled coil AYR68_11575 PF05229 AYR68_11575 AYR68_11580 PF00577 Outer membrane usher protein AYR68_11580 PF13953 PapC C-terminal domain AYR68_11585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYR68_11590 PF05229 AYR68_11590 AYR68_11595 PF05229 AYR68_11595 AYR68_11600 PF05229 AYR68_11600 AYR68_11605 PF00440 Bacterial regulatory proteins, tetR family AYR68_11615 PF00392 Bacterial regulatory proteins, gntR family AYR68_11615 PF07729 FCD domain AYR68_11620 PF05673 Protein of unknown function (DUF815) AYR68_11625 PF03616 AYR68_11625 AYR68_11630 PF00561 alpha/beta hydrolase fold AYR68_11635 PF02311 AraC-like ligand binding domain AYR68_11635 PF12833 Helix-turn-helix domain AYR68_11640 PF01810 AYR68_11640 AYR68_11650 PF04940 Sensors of blue-light using FAD AYR68_11655 PF04076 Bacterial OB fold (BOF) protein AYR68_11660 PF00535 Glycosyl transferase family 2 AYR68_11665 PF05401 Nodulation protein S (NodS) AYR68_11670 PF02585 GlcNAc-PI de-N-acetylase AYR68_11680 PF09939 AYR68_11680 AYR68_11685 PF00324 Amino acid permease AYR68_11690 PF00171 Aldehyde dehydrogenase family AYR68_11695 PF00202 Aminotransferase class-III AYR68_11700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_11700 PF03466 LysR substrate binding domain AYR68_11725 PF00069 Protein kinase domain AYR68_11730 PF01734 Patatin-like phospholipase AYR68_11730 PF11815 AYR68_11730 AYR68_11735 PF05673 Protein of unknown function (DUF815) AYR68_11745 PF00814 Glycoprotease family AYR68_11750 PF01165 Ribosomal protein S21 AYR68_11755 PF09424 Yqey-like protein AYR68_11760 PF01435 Peptidase family M48 AYR68_11765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR68_11765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR68_11775 PF01435 Peptidase family M48 AYR68_11780 PF00156 Phosphoribosyl transferase domain AYR68_11780 PF13522 Glutamine amidotransferase domain AYR68_11785 PF02674 AYR68_11785 AYR68_11790 PF01180 Dihydroorotate dehydrogenase AYR68_11795 PF04612 Type II secretion system (T2SS), protein M AYR68_11800 PF05134 Type II secretion system (T2SS), protein L AYR68_11800 PF12693 GspL periplasmic domain AYR68_11805 PF00300 Histidine phosphatase superfamily (branch 1) AYR68_11810 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYR68_11810 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYR68_11815 PF00881 Nitroreductase family AYR68_11825 PF00270 DEAD/DEAH box helicase AYR68_11825 PF00271 Helicase conserved C-terminal domain AYR68_11830 PF00313 'Cold-shock' DNA-binding domain AYR68_11835 PF01206 Sulfurtransferase TusA AYR68_11840 PF00140 Sigma-70 factor, region 1 AYR68_11840 PF04542 Sigma-70 region 2 AYR68_11840 PF04545 Sigma-70, region 4 AYR68_11845 PF04241 AYR68_11845 AYR68_11850 PF02597 ThiS family AYR68_11855 PF05690 Thiazole biosynthesis protein ThiG AYR68_11865 PF03883 AYR68_11865 AYR68_11875 PF00753 Metallo-beta-lactamase superfamily AYR68_11880 PF01546 Peptidase family M20/M25/M40 AYR68_11880 PF07687 Peptidase dimerisation domain AYR68_11890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYR68_11890 PF02153 Prephenate dehydrogenase AYR68_11895 PF00800 Prephenate dehydratase AYR68_11895 PF01817 Chorismate mutase type II AYR68_11895 PF01842 ACT domain AYR68_11900 PF00756 Putative esterase AYR68_11905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_11905 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_11905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_11910 PF00375 Sodium:dicarboxylate symporter family AYR68_11915 PF00591 Glycosyl transferase family, a/b domain AYR68_11915 PF02885 Glycosyl transferase family, helical bundle domain AYR68_11920 PF07023 AYR68_11920 AYR68_11925 PF01513 ATP-NAD kinase AYR68_11930 PF00905 Penicillin binding protein transpeptidase domain AYR68_11930 PF00912 Transglycosylase AYR68_11930 PF14814 Bifunctional transglycosylase second domain AYR68_11940 PF00293 NUDIX domain AYR68_11940 PF02581 Thiamine monophosphate synthase/TENI AYR68_11945 PF10636 Hemin uptake protein hemP AYR68_11950 PF00512 His Kinase A (phospho-acceptor) domain AYR68_11950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_11955 PF00072 Response regulator receiver domain AYR68_11955 PF00486 Transcriptional regulatory protein, C terminal AYR68_11960 PF04076 Bacterial OB fold (BOF) protein AYR68_11965 PF00437 Type II/IV secretion system protein AYR68_11965 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AYR68_11970 PF02308 AYR68_11970 AYR68_11970 PF13194 AYR68_11970 AYR68_11975 PF01980 Uncharacterised protein family UPF0066 AYR68_11980 PF00175 Oxidoreductase NAD-binding domain AYR68_11980 PF00970 Oxidoreductase FAD-binding domain AYR68_11985 PF02567 Phenazine biosynthesis-like protein AYR68_11990 PF00155 Aminotransferase class I and II AYR68_11990 PF00392 Bacterial regulatory proteins, gntR family AYR68_11995 PF01136 AYR68_11995 AYR68_11995 PF16325 AYR68_11995 AYR68_12005 PF00893 Small Multidrug Resistance protein AYR68_12010 PF00005 ABC transporter AYR68_12015 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_12020 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_12030 PF01609 Transposase DDE domain AYR68_12035 PF01609 Transposase DDE domain AYR68_12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_12045 PF03466 LysR substrate binding domain AYR68_12055 PF16576 AYR68_12055 AYR68_12060 PF00873 AcrB/AcrD/AcrF family AYR68_12065 PF02321 Outer membrane efflux protein AYR68_12070 PF00464 Serine hydroxymethyltransferase AYR68_12075 PF05117 AYR68_12075 AYR68_12075 PF06877 Regulator of ribonuclease activity B AYR68_12080 PF03583 Secretory lipase AYR68_12085 PF12843 AYR68_12085 AYR68_12100 PF00005 ABC transporter AYR68_12105 PF01061 AYR68_12105 AYR68_12110 PF14489 QueF-like protein AYR68_12110 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AYR68_12120 PF01098 AYR68_12120 AYR68_12125 PF13406 Transglycosylase SLT domain AYR68_12130 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AYR68_12135 PF06127 AYR68_12135 AYR68_12140 PF05437 AYR68_12140 AYR68_12145 PF03591 AYR68_12145 AYR68_12150 PF02311 AraC-like ligand binding domain AYR68_12150 PF12833 Helix-turn-helix domain AYR68_12155 PF11948 AYR68_12155 AYR68_12160 PF00889 Elongation factor TS AYR68_12165 PF00318 Ribosomal protein S2 AYR68_12170 PF00557 Metallopeptidase family M24 AYR68_12175 PF03922 OmpW family AYR68_12180 PF07690 Major Facilitator Superfamily AYR68_12185 PF07690 Major Facilitator Superfamily AYR68_12195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR68_12195 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_12200 PF04055 Radical SAM superfamily AYR68_12200 PF16881 AYR68_12200 AYR68_12205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_12205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_12205 PF09317 AYR68_12205 AYR68_12210 PF02627 Carboxymuconolactone decarboxylase family AYR68_12215 PF03412 Peptidase C39 family AYR68_12220 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AYR68_12220 PF05221 S-adenosyl-L-homocysteine hydrolase AYR68_12225 PF02219 Methylenetetrahydrofolate reductase AYR68_12230 PF04452 RNA methyltransferase AYR68_12235 PF00563 EAL domain AYR68_12235 PF00989 PAS fold AYR68_12235 PF00990 GGDEF domain AYR68_12235 PF08447 PAS fold AYR68_12240 PF00390 Malic enzyme, N-terminal domain AYR68_12240 PF01515 Phosphate acetyl/butaryl transferase AYR68_12240 PF03949 Malic enzyme, NAD binding domain AYR68_12245 PF01743 Poly A polymerase head domain AYR68_12245 PF12627 Probable RNA and SrmB- binding site of polymerase A AYR68_12250 PF13180 PDZ domain AYR68_12250 PF13365 Trypsin-like peptidase domain AYR68_12255 PF01784 NIF3 (NGG1p interacting factor 3) AYR68_12260 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYR68_12260 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYR68_12280 PF10881 AYR68_12280 AYR68_12290 PF03583 Secretory lipase AYR68_12295 PF01040 UbiA prenyltransferase family AYR68_12300 PF04345 Chorismate lyase AYR68_12305 PF00120 Glutamine synthetase, catalytic domain AYR68_12305 PF03951 Glutamine synthetase, beta-Grasp domain AYR68_12310 PF00854 POT family AYR68_12315 PF00557 Metallopeptidase family M24 AYR68_12315 PF01321 Creatinase/Prolidase N-terminal domain AYR68_12315 PF16188 AYR68_12315 AYR68_12315 PF16189 AYR68_12315 AYR68_12320 PF00117 Glutamine amidotransferase class-I AYR68_12330 PF00593 TonB dependent receptor AYR68_12330 PF07715 TonB-dependent Receptor Plug Domain AYR68_12335 PF00591 Glycosyl transferase family, a/b domain AYR68_12335 PF02885 Glycosyl transferase family, helical bundle domain AYR68_12340 PF00218 Indole-3-glycerol phosphate synthase AYR68_12345 PF01713 Smr domain AYR68_12350 PF02625 XdhC and CoxI family AYR68_12350 PF13478 XdhC Rossmann domain AYR68_12355 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYR68_12355 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYR68_12360 PF00941 FAD binding domain in molybdopterin dehydrogenase AYR68_12360 PF01799 [2Fe-2S] binding domain AYR68_12360 PF03450 CO dehydrogenase flavoprotein C-terminal domain AYR68_12365 PF01227 GTP cyclohydrolase I AYR68_12370 PF00144 Beta-lactamase AYR68_12375 PF13387 AYR68_12375 AYR68_12380 PF11220 AYR68_12380 AYR68_12385 PF05675 AYR68_12385 AYR68_12390 PF01208 Uroporphyrinogen decarboxylase (URO-D) AYR68_12395 PF01471 Putative peptidoglycan binding domain AYR68_12395 PF03734 L,D-transpeptidase catalytic domain AYR68_12400 PF00425 chorismate binding enzyme AYR68_12405 PF01648 4'-phosphopantetheinyl transferase superfamily AYR68_12410 PF00975 Thioesterase domain AYR68_12415 PF00005 ABC transporter AYR68_12415 PF00664 ABC transporter transmembrane region AYR68_12420 PF00005 ABC transporter AYR68_12420 PF00664 ABC transporter transmembrane region AYR68_12430 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYR68_12435 PF00550 Phosphopantetheine attachment site AYR68_12435 PF00857 Isochorismatase family AYR68_12440 PF00501 AMP-binding enzyme AYR68_12440 PF13193 AMP-binding enzyme C-terminal domain AYR68_12445 PF00668 Condensation domain AYR68_12450 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYR68_12455 PF00593 TonB dependent receptor AYR68_12455 PF07715 TonB-dependent Receptor Plug Domain AYR68_12460 PF01497 Periplasmic binding protein AYR68_12465 PF00005 ABC transporter AYR68_12470 PF01032 FecCD transport family AYR68_12475 PF01032 FecCD transport family AYR68_12480 PF00550 Phosphopantetheine attachment site AYR68_12480 PF00668 Condensation domain AYR68_12485 PF00501 AMP-binding enzyme AYR68_12485 PF13193 AMP-binding enzyme C-terminal domain AYR68_12490 PF04954 Siderophore-interacting protein AYR68_12490 PF08021 Siderophore-interacting FAD-binding domain AYR68_12495 PF08348 AYR68_12495 AYR68_12495 PF13309 AYR68_12495 AYR68_12505 PF02678 Pirin AYR68_12510 PF00440 Bacterial regulatory proteins, tetR family AYR68_12515 PF00440 Bacterial regulatory proteins, tetR family AYR68_12520 PF00440 Bacterial regulatory proteins, tetR family AYR68_12525 PF00107 Zinc-binding dehydrogenase AYR68_12525 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_12530 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYR68_12530 PF13378 Enolase C-terminal domain-like AYR68_12535 PF00083 Sugar (and other) transporter AYR68_12540 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AYR68_12545 PF00892 EamA-like transporter family AYR68_12550 PF00892 EamA-like transporter family AYR68_12555 PF01914 AYR68_12555 AYR68_12565 PF06249 Ethanolamine utilisation protein EutQ AYR68_12570 PF01266 FAD dependent oxidoreductase AYR68_12575 PF00301 Rubredoxin AYR68_12575 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_12580 PF00171 Aldehyde dehydrogenase family AYR68_12585 PF00355 Rieske [2Fe-2S] domain AYR68_12585 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR68_12590 PF02028 BCCT family transporter AYR68_12595 PF02028 BCCT family transporter AYR68_12600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_12600 PF03466 LysR substrate binding domain AYR68_12610 PF01527 Transposase AYR68_12615 PF05717 AYR68_12615 AYR68_12620 PF03050 AYR68_12620 AYR68_12620 PF13005 AYR68_12620 AYR68_12620 PF13007 AYR68_12620 AYR68_12620 PF13817 AYR68_12620 AYR68_12630 PF00171 Aldehyde dehydrogenase family AYR68_12635 PF05899 Protein of unknown function (DUF861) AYR68_12640 PF01266 FAD dependent oxidoreductase AYR68_12645 PF07905 AYR68_12645 AYR68_12645 PF13556 PucR C-terminal helix-turn-helix domain AYR68_12650 PF00440 Bacterial regulatory proteins, tetR family AYR68_12655 PF03374 AYR68_12655 AYR68_12675 PF04328 AYR68_12675 AYR68_12680 PF02554 AYR68_12680 AYR68_12680 PF13722 AYR68_12680 AYR68_12685 PF01132 Elongation factor P (EF-P) OB domain AYR68_12685 PF08207 Elongation factor P (EF-P) KOW-like domain AYR68_12685 PF09285 Elongation factor P, C-terminal AYR68_12690 PF04055 Radical SAM superfamily AYR68_12690 PF13394 4Fe-4S single cluster domain AYR68_12700 PF00563 EAL domain AYR68_12705 PF01197 Ribosomal protein L31 AYR68_12710 PF13593 SBF-like CPA transporter family (DUF4137) AYR68_12715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR68_12720 PF07690 Major Facilitator Superfamily AYR68_12725 PF05362 Lon protease (S16) C-terminal proteolytic domain AYR68_12725 PF13654 AAA domain AYR68_12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_12730 PF03466 LysR substrate binding domain AYR68_12735 PF01476 LysM domain AYR68_12735 PF01551 Peptidase family M23 AYR68_12740 PF01975 Survival protein SurE AYR68_12755 PF00768 D-alanyl-D-alanine carboxypeptidase AYR68_12755 PF07943 Penicillin-binding protein 5, C-terminal domain AYR68_12760 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_12765 PF00293 NUDIX domain AYR68_12770 PF03054 tRNA methyl transferase AYR68_12775 PF04356 Protein of unknown function (DUF489) AYR68_12780 PF00206 Lyase AYR68_12780 PF08328 Adenylosuccinate lyase C-terminal AYR68_12785 PF09997 AYR68_12785 AYR68_12795 PF01343 Peptidase family S49 AYR68_12795 PF08496 AYR68_12795 AYR68_12800 PF00005 ABC transporter AYR68_12805 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_12805 PF11812 AYR68_12805 AYR68_12810 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_12810 PF12501 AYR68_12810 AYR68_12815 PF12849 PBP superfamily domain AYR68_12820 PF00324 Amino acid permease AYR68_12825 PF00205 Thiamine pyrophosphate enzyme, central domain AYR68_12825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYR68_12825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYR68_12830 PF01037 AsnC family AYR68_12830 PF13404 AsnC-type helix-turn-helix domain AYR68_12835 PF00171 Aldehyde dehydrogenase family AYR68_12840 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYR68_12845 PF00202 Aminotransferase class-III AYR68_12850 PF04402 Protein of unknown function (DUF541) AYR68_12855 PF00440 Bacterial regulatory proteins, tetR family AYR68_12860 PF14539 Domain of unknown function (DUF4442) AYR68_12865 PF00487 AYR68_12865 AYR68_12870 PF00175 Oxidoreductase NAD-binding domain AYR68_12870 PF00970 Oxidoreductase FAD-binding domain AYR68_12875 PF00440 Bacterial regulatory proteins, tetR family AYR68_12880 PF01594 AYR68_12880 AYR68_12885 PF00176 SNF2 family N-terminal domain AYR68_12885 PF00271 Helicase conserved C-terminal domain AYR68_12885 PF12137 RNA polymerase recycling family C-terminal AYR68_12890 PF00849 RNA pseudouridylate synthase AYR68_12900 PF00202 Aminotransferase class-III AYR68_12905 PF02581 Thiamine monophosphate synthase/TENI AYR68_12910 PF06127 AYR68_12910 AYR68_12915 PF01928 CYTH domain AYR68_12915 PF05235 CHAD domain AYR68_12925 PF11342 Protein of unknown function (DUF3144) AYR68_12930 PF00675 Insulinase (Peptidase family M16) AYR68_12930 PF05193 Peptidase M16 inactive domain AYR68_12935 PF02567 Phenazine biosynthesis-like protein AYR68_12940 PF00375 Sodium:dicarboxylate symporter family AYR68_12945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_12945 PF03466 LysR substrate binding domain AYR68_12950 PF06779 AYR68_12950 AYR68_12965 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR68_12970 PF00849 RNA pseudouridylate synthase AYR68_12975 PF03971 Monomeric isocitrate dehydrogenase AYR68_12980 PF05299 M61 glycyl aminopeptidase AYR68_12985 PF00768 D-alanyl-D-alanine carboxypeptidase AYR68_12990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_12995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR68_13000 PF00875 DNA photolyase AYR68_13000 PF03441 FAD binding domain of DNA photolyase AYR68_13015 PF13641 Glycosyltransferase like family 2 AYR68_13030 PF02350 UDP-N-acetylglucosamine 2-epimerase AYR68_13040 PF01988 AYR68_13040 AYR68_13045 PF03060 Nitronate monooxygenase AYR68_13050 PF01207 Dihydrouridine synthase (Dus) AYR68_13055 PF00589 Phage integrase family AYR68_13085 PF05838 Glycosyl hydrolase 108 AYR68_13085 PF09374 Predicted Peptidoglycan domain AYR68_13095 PF16080 AYR68_13095 AYR68_13110 PF13550 AYR68_13110 AYR68_13115 PF06805 AYR68_13115 AYR68_13120 PF00877 NlpC/P60 family AYR68_13120 PF14464 Prokaryotic homologs of the JAB domain AYR68_13125 PF05100 AYR68_13125 AYR68_13135 PF05939 AYR68_13135 AYR68_13140 PF01464 Transglycosylase SLT domain AYR68_13150 PF15919 AYR68_13150 AYR68_13155 PF07927 YcfA-like protein AYR68_13200 PF10281 AYR68_13200 AYR68_13215 PF13876 AYR68_13215 AYR68_13225 PF04233 AYR68_13225 AYR68_13230 PF13264 AYR68_13230 AYR68_13235 PF17289 AYR68_13235 AYR68_13240 PF10045 AYR68_13240 AYR68_13260 PF02086 D12 class N6 adenine-specific DNA methyltransferase AYR68_13280 PF06356 AYR68_13280 AYR68_13300 PF01507 Phosphoadenosine phosphosulfate reductase family AYR68_13310 PF04492 AYR68_13310 AYR68_13315 PF01507 Phosphoadenosine phosphosulfate reductase family AYR68_13335 PF00717 Peptidase S24-like AYR68_13350 PF04404 AYR68_13350 AYR68_13375 PF02954 Bacterial regulatory protein, Fis family AYR68_13380 PF11112 AYR68_13380 AYR68_13385 PF07759 AYR68_13385 AYR68_13390 PF12710 haloacid dehalogenase-like hydrolase AYR68_13395 PF00696 Amino acid kinase family AYR68_13395 PF01472 PUA domain AYR68_13400 PF01018 GTP1/OBG AYR68_13400 PF01926 50S ribosome-binding GTPase AYR68_13415 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYR68_13415 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYR68_13420 PF00892 EamA-like transporter family AYR68_13425 PF08212 Lipocalin-like domain AYR68_13430 PF00271 Helicase conserved C-terminal domain AYR68_13430 PF02151 UvrB/uvrC motif AYR68_13430 PF04851 Type III restriction enzyme, res subunit AYR68_13430 PF12344 Ultra-violet resistance protein B AYR68_13440 PF00990 GGDEF domain AYR68_13440 PF13188 PAS domain AYR68_13450 PF00155 Aminotransferase class I and II AYR68_13455 PF04828 Glutathione-dependent formaldehyde-activating enzyme AYR68_13460 PF03061 Thioesterase superfamily AYR68_13475 PF00106 short chain dehydrogenase AYR68_13480 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AYR68_13485 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AYR68_13490 PF02565 Recombination protein O C terminal AYR68_13490 PF11967 Recombination protein O N terminal AYR68_13500 PF01926 50S ribosome-binding GTPase AYR68_13500 PF07650 KH domain AYR68_13505 PF00035 Double-stranded RNA binding motif AYR68_13505 PF14622 Ribonuclease-III-like AYR68_13510 PF16137 AYR68_13510 AYR68_13515 PF00717 Peptidase S24-like AYR68_13515 PF10502 Signal peptidase, peptidase S26 AYR68_13520 PF00009 Elongation factor Tu GTP binding domain AYR68_13520 PF00679 Elongation factor G C-terminus AYR68_13520 PF03144 Elongation factor Tu domain 2 AYR68_13520 PF06421 GTP-binding protein LepA C-terminus AYR68_13525 PF13279 Thioesterase-like superfamily AYR68_13530 PF13180 PDZ domain AYR68_13530 PF13365 Trypsin-like peptidase domain AYR68_13535 PF00890 FAD binding domain AYR68_13535 PF02910 Fumarate reductase flavoprotein C-term AYR68_13540 PF03061 Thioesterase superfamily AYR68_13545 PF02223 Thymidylate kinase AYR68_13550 PF02618 YceG-like family AYR68_13555 PF01063 Aminotransferase class IV AYR68_13560 PF13531 Bacterial extracellular solute-binding protein AYR68_13565 PF06821 Serine hydrolase AYR68_13570 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_13575 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_13580 PF00005 ABC transporter AYR68_13580 PF12857 AYR68_13580 AYR68_13585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_13585 PF03466 LysR substrate binding domain AYR68_13595 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_13595 PF14602 Hexapeptide repeat of succinyl-transferase AYR68_13595 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AYR68_13600 PF04055 Radical SAM superfamily AYR68_13600 PF13394 4Fe-4S single cluster domain AYR68_13605 PF06508 Queuosine biosynthesis protein QueC AYR68_13615 PF01902 ATP-binding region AYR68_13620 PF00578 AhpC/TSA family AYR68_13625 PF00188 Cysteine-rich secretory protein family AYR68_13630 PF01467 Cytidylyltransferase AYR68_13635 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_13650 PF07690 Major Facilitator Superfamily AYR68_13655 PF02769 AIR synthase related protein, C-terminal domain AYR68_13655 PF13507 CobB/CobQ-like glutamine amidotransferase domain AYR68_13660 PF01966 HD domain AYR68_13665 PF01330 RuvA N terminal domain AYR68_13665 PF07499 RuvA, C-terminal domain AYR68_13665 PF14520 Helix-hairpin-helix domain AYR68_13670 PF05491 Holliday junction DNA helicase ruvB C-terminus AYR68_13670 PF05496 Holliday junction DNA helicase ruvB N-terminus AYR68_13675 PF01546 Peptidase family M20/M25/M40 AYR68_13675 PF07687 Peptidase dimerisation domain AYR68_13680 PF03061 Thioesterase superfamily AYR68_13685 PF01618 AYR68_13685 AYR68_13690 PF02472 Biopolymer transport protein ExbD/TolR AYR68_13695 PF13103 TonB C terminal AYR68_13700 PF04052 TolB amino-terminal domain AYR68_13700 PF07676 WD40-like Beta Propeller Repeat AYR68_13705 PF00691 OmpA family AYR68_13715 PF00316 Fructose-1-6-bisphosphatase AYR68_13720 PF00588 SpoU rRNA Methylase family AYR68_13725 PF04542 Sigma-70 region 2 AYR68_13725 PF08281 Sigma-70, region 4 AYR68_13735 PF11304 AYR68_13735 AYR68_13750 PF00308 Bacterial dnaA protein AYR68_13755 PF01594 AYR68_13755 AYR68_13760 PF00586 AIR synthase related protein, N-terminal domain AYR68_13760 PF02769 AIR synthase related protein, C-terminal domain AYR68_13765 PF00551 Formyl transferase AYR68_13770 PF12697 Alpha/beta hydrolase family AYR68_13775 PF01343 Peptidase family S49 AYR68_13780 PF03279 AYR68_13780 AYR68_13785 PF00753 Metallo-beta-lactamase superfamily AYR68_13785 PF03772 AYR68_13785 AYR68_13785 PF13567 AYR68_13785 AYR68_13790 PF00005 ABC transporter AYR68_13795 PF02687 AYR68_13795 AYR68_13795 PF12704 MacB-like periplasmic core domain AYR68_13800 PF00892 EamA-like transporter family AYR68_13805 PF02639 AYR68_13805 AYR68_13815 PF00266 Aminotransferase class-V AYR68_13820 PF02321 Outer membrane efflux protein AYR68_13825 PF16576 AYR68_13825 AYR68_13830 PF12698 ABC-2 family transporter protein AYR68_13835 PF12698 ABC-2 family transporter protein AYR68_13840 PF04794 YdjC-like protein AYR68_13845 PF00535 Glycosyl transferase family 2 AYR68_13850 PF04138 AYR68_13850 AYR68_13860 PF01609 Transposase DDE domain AYR68_13865 PF01609 Transposase DDE domain AYR68_13875 PF00521 DNA gyrase/topoisomerase IV, subunit A AYR68_13875 PF03989 DNA gyrase C-terminal domain, beta-propeller AYR68_13880 PF00766 Electron transfer flavoprotein FAD-binding domain AYR68_13880 PF01012 Electron transfer flavoprotein domain AYR68_13885 PF01012 Electron transfer flavoprotein domain AYR68_13890 PF00589 Phage integrase family AYR68_13890 PF02899 Phage integrase, N-terminal SAM-like domain AYR68_13895 PF01810 AYR68_13895 AYR68_13900 PF01678 Diaminopimelate epimerase AYR68_13905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYR68_13905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYR68_13915 PF00324 Amino acid permease AYR68_13920 PF06745 KaiC AYR68_13920 PF13541 Subunit ChlI of Mg-chelatase AYR68_13925 PF04280 Tim44-like domain AYR68_13930 PF00152 tRNA synthetases class II (D, K and N) AYR68_13935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR68_13935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR68_13935 PF11890 Domain of unknown function (DUF3410) AYR68_13940 PF06803 AYR68_13940 AYR68_13945 PF02634 FdhD/NarQ family AYR68_13950 PF00384 Molybdopterin oxidoreductase AYR68_13950 PF01568 Molydopterin dinucleotide binding domain AYR68_13955 PF02595 Glycerate kinase family AYR68_13960 PF00440 Bacterial regulatory proteins, tetR family AYR68_13965 PF00106 short chain dehydrogenase AYR68_13970 PF00881 Nitroreductase family AYR68_13975 PF00440 Bacterial regulatory proteins, tetR family AYR68_13980 PF10118 AYR68_13980 AYR68_13985 PF00440 Bacterial regulatory proteins, tetR family AYR68_13995 PF00501 AMP-binding enzyme AYR68_13995 PF00550 Phosphopantetheine attachment site AYR68_13995 PF13193 AMP-binding enzyme C-terminal domain AYR68_14000 PF14534 Domain of unknown function (DUF4440) AYR68_14010 PF01272 Transcription elongation factor, GreA/GreB, C-term AYR68_14010 PF03449 Transcription elongation factor, N-terminal AYR68_14015 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR68_14015 PF01464 Transglycosylase SLT domain AYR68_14020 PF02036 SCP-2 sterol transfer family AYR68_14025 PF01171 PP-loop family AYR68_14030 PF01464 Transglycosylase SLT domain AYR68_14035 PF01435 Peptidase family M48 AYR68_14040 PF13430 AYR68_14040 AYR68_14045 PF00873 AcrB/AcrD/AcrF family AYR68_14050 PF03009 Glycerophosphoryl diester phosphodiesterase family AYR68_14055 PF00753 Metallo-beta-lactamase superfamily AYR68_14060 PF01219 Prokaryotic diacylglycerol kinase AYR68_14065 PF00118 TCP-1/cpn60 chaperonin family AYR68_14070 PF00166 Chaperonin 10 Kd subunit AYR68_14075 PF12245 Bacterial Ig-like domain (group 3) AYR68_14080 PF00149 Calcineurin-like phosphoesterase AYR68_14085 PF00781 Diacylglycerol kinase catalytic domain AYR68_14090 PF00821 Phosphoenolpyruvate carboxykinase AYR68_14090 PF17297 AYR68_14090 AYR68_14095 PF01266 FAD dependent oxidoreductase AYR68_14095 PF16901 AYR68_14095 AYR68_14100 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYR68_14100 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYR68_14105 PF00083 Sugar (and other) transporter AYR68_14115 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AYR68_14120 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYR68_14120 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYR68_14135 PF09423 PhoD-like phosphatase AYR68_14135 PF16655 AYR68_14135 AYR68_14155 PF00809 Pterin binding enzyme AYR68_14160 PF00004 ATPase family associated with various cellular activities (AAA) AYR68_14160 PF01434 Peptidase family M41 AYR68_14160 PF06480 FtsH Extracellular AYR68_14165 PF01728 FtsJ-like methyltransferase AYR68_14170 PF01985 CRS1 / YhbY (CRM) domain AYR68_14185 PF00117 Glutamine amidotransferase class-I AYR68_14185 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AYR68_14190 PF02142 MGS-like domain AYR68_14190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR68_14190 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYR68_14195 PF01272 Transcription elongation factor, GreA/GreB, C-term AYR68_14195 PF03449 Transcription elongation factor, N-terminal AYR68_14200 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_14205 PF00582 Universal stress protein family AYR68_14210 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR68_14220 PF09587 Bacterial capsule synthesis protein PGA_cap AYR68_14240 PF00999 Sodium/hydrogen exchanger family AYR68_14245 PF04228 AYR68_14245 AYR68_14250 PF05661 AYR68_14250 AYR68_14255 PF00579 tRNA synthetases class I (W and Y) AYR68_14260 PF00549 CoA-ligase AYR68_14260 PF02629 CoA binding domain AYR68_14265 PF00549 CoA-ligase AYR68_14265 PF08442 ATP-grasp domain AYR68_14270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR68_14270 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_14275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR68_14275 PF00364 Biotin-requiring enzyme AYR68_14275 PF02817 e3 binding domain AYR68_14280 PF00676 Dehydrogenase E1 component AYR68_14280 PF02779 Transketolase, pyrimidine binding domain AYR68_14280 PF16078 AYR68_14280 AYR68_14280 PF16870 AYR68_14280 AYR68_14285 PF13085 2Fe-2S iron-sulfur cluster binding domain AYR68_14285 PF13534 4Fe-4S dicluster domain AYR68_14290 PF00890 FAD binding domain AYR68_14290 PF02910 Fumarate reductase flavoprotein C-term AYR68_14295 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYR68_14300 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYR68_14305 PF00285 Citrate synthase AYR68_14310 PF06945 AYR68_14310 AYR68_14315 PF00581 Rhodanese-like domain AYR68_14325 PF03695 Uncharacterised protein family (UPF0149) AYR68_14335 PF00140 Sigma-70 factor, region 1 AYR68_14335 PF03979 Sigma-70 factor, region 1 AYR68_14335 PF04539 Sigma-70 region 3 AYR68_14335 PF04542 Sigma-70 region 2 AYR68_14335 PF04545 Sigma-70, region 4 AYR68_14335 PF04546 Sigma-70, non-essential region AYR68_14340 PF04359 Protein of unknown function (DUF493) AYR68_14345 PF03099 Biotin/lipoate A/B protein ligase family AYR68_14355 PF00465 Iron-containing alcohol dehydrogenase AYR68_14360 PF00324 Amino acid permease AYR68_14365 PF12724 Flavodoxin domain AYR68_14370 PF01638 HxlR-like helix-turn-helix AYR68_14375 PF00588 SpoU rRNA Methylase family AYR68_14380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYR68_14380 PF10414 Sirohaem synthase dimerisation region AYR68_14380 PF13241 Putative NAD(P)-binding AYR68_14385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR68_14385 PF02403 Seryl-tRNA synthetase N-terminal domain AYR68_14390 PF11738 Protein of unknown function (DUF3298) AYR68_14395 PF03548 Outer membrane lipoprotein carrier protein LolA AYR68_14400 PF01016 Ribosomal L27 protein AYR68_14405 PF00829 Ribosomal prokaryotic L21 protein AYR68_14415 PF00348 Polyprenyl synthetase AYR68_14420 PF10136 AYR68_14420 AYR68_14425 PF01569 PAP2 superfamily AYR68_14430 PF00529 HlyD family secretion protein AYR68_14430 PF16576 AYR68_14430 AYR68_14435 PF00873 AcrB/AcrD/AcrF family AYR68_14440 PF02321 Outer membrane efflux protein AYR68_14445 PF01906 Putative heavy-metal-binding AYR68_14450 PF01906 Putative heavy-metal-binding AYR68_14455 PF13577 SnoaL-like domain AYR68_14460 PF00106 short chain dehydrogenase AYR68_14470 PF00133 tRNA synthetases class I (I, L, M and V) AYR68_14470 PF08264 Anticodon-binding domain of tRNA AYR68_14470 PF10458 Valyl tRNA synthetase tRNA binding arm AYR68_14475 PF13649 Methyltransferase domain AYR68_14485 PF03547 AYR68_14485 AYR68_14490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_14490 PF03466 LysR substrate binding domain AYR68_14495 PF00909 Ammonium Transporter Family AYR68_14500 PF01569 PAP2 superfamily AYR68_14505 PF00512 His Kinase A (phospho-acceptor) domain AYR68_14505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_14510 PF00072 Response regulator receiver domain AYR68_14510 PF00486 Transcriptional regulatory protein, C terminal AYR68_14515 PF00884 Sulfatase AYR68_14515 PF08019 AYR68_14515 AYR68_14520 PF02530 AYR68_14520 AYR68_14525 PF01609 Transposase DDE domain AYR68_14530 PF01609 Transposase DDE domain AYR68_14535 PF01609 Transposase DDE domain AYR68_14540 PF01609 Transposase DDE domain AYR68_14550 PF01553 Acyltransferase AYR68_14555 PF01734 Patatin-like phospholipase AYR68_14560 PF01957 NfeD-like C-terminal, partner-binding AYR68_14565 PF01145 SPFH domain / Band 7 family AYR68_14570 PF04237 YjbR AYR68_14575 PF00348 Polyprenyl synthetase AYR68_14580 PF04303 PrpF protein AYR68_14585 PF00324 Amino acid permease AYR68_14595 PF01965 DJ-1/PfpI family AYR68_14600 PF00107 Zinc-binding dehydrogenase AYR68_14600 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_14605 PF06719 AYR68_14605 AYR68_14605 PF12833 Helix-turn-helix domain AYR68_14610 PF02673 AYR68_14610 AYR68_14615 PF08223 PaaX-like protein C-terminal domain AYR68_14620 PF00487 AYR68_14620 AYR68_14625 PF12625 AYR68_14625 AYR68_14625 PF12833 Helix-turn-helix domain AYR68_14630 PF02525 Flavodoxin-like fold AYR68_14635 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AYR68_14640 PF12710 haloacid dehalogenase-like hydrolase AYR68_14645 PF01507 Phosphoadenosine phosphosulfate reductase family AYR68_14650 PF03007 AYR68_14650 AYR68_14650 PF06974 AYR68_14650 AYR68_14660 PF00575 S1 RNA binding domain AYR68_14660 PF10150 Ribonuclease E/G family AYR68_14665 PF02545 Maf-like protein AYR68_14670 PF04093 AYR68_14670 AYR68_14675 PF04085 rod shape-determining protein MreC AYR68_14680 PF06723 MreB/Mbl protein AYR68_14685 PF02686 Glu-tRNAGln amidotransferase C subunit AYR68_14690 PF01425 Amidase AYR68_14695 PF02637 GatB domain AYR68_14695 PF02934 GatB/GatE catalytic domain AYR68_14705 PF01965 DJ-1/PfpI family AYR68_14715 PF06674 AYR68_14715 AYR68_14720 PF16142 AYR68_14720 AYR68_14725 PF05992 AYR68_14725 AYR68_14730 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_14735 PF01734 Patatin-like phospholipase AYR68_14740 PF01235 AYR68_14740 AYR68_14750 PF00881 Nitroreductase family AYR68_14755 PF07690 Major Facilitator Superfamily AYR68_14760 PF12805 AYR68_14760 AYR68_14760 PF13515 AYR68_14760 AYR68_14765 PF14317 AYR68_14765 AYR68_14770 PF00175 Oxidoreductase NAD-binding domain AYR68_14770 PF00258 Flavodoxin AYR68_14770 PF03929 AYR68_14770 AYR68_14775 PF02698 DUF218 domain AYR68_14810 PF03734 L,D-transpeptidase catalytic domain AYR68_14815 PF04304 AYR68_14815 AYR68_14820 PF08907 AYR68_14820 AYR68_14825 PF08085 AYR68_14825 AYR68_14830 PF01546 Peptidase family M20/M25/M40 AYR68_14830 PF07687 Peptidase dimerisation domain AYR68_14840 PF00072 Response regulator receiver domain AYR68_14840 PF01584 CheW-like domain AYR68_14840 PF01627 Hpt domain AYR68_14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_14845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYR68_14850 PF01584 CheW-like domain AYR68_14855 PF00072 Response regulator receiver domain AYR68_14860 PF00072 Response regulator receiver domain AYR68_14870 PF13437 HlyD family secretion protein AYR68_14870 PF13533 Biotin-lipoyl like AYR68_14875 PF00873 AcrB/AcrD/AcrF family AYR68_14880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR68_14880 PF03129 Anticodon binding domain AYR68_14880 PF04073 Aminoacyl-tRNA editing domain AYR68_14885 PF07411 Domain of unknown function (DUF1508) AYR68_14890 PF03831 PhnA protein AYR68_14890 PF08274 PhnA Zinc-Ribbon AYR68_14895 PF04343 AYR68_14895 AYR68_14900 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AYR68_14905 PF01571 Aminomethyltransferase folate-binding domain AYR68_14910 PF10411 Disulfide bond isomerase protein N-terminus AYR68_14910 PF13098 Thioredoxin-like domain AYR68_14915 PF08238 Sel1 repeat AYR68_14920 PF03547 AYR68_14920 AYR68_14925 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR68_14930 PF00593 TonB dependent receptor AYR68_14930 PF07715 TonB-dependent Receptor Plug Domain AYR68_14935 PF02245 Methylpurine-DNA glycosylase (MPG) AYR68_14940 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYR68_14940 PF06827 Zinc finger found in FPG and IleRS AYR68_14940 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYR68_14945 PF00639 PPIC-type PPIASE domain AYR68_14950 PF06094 AIG2-like family AYR68_14955 PF01741 Large-conductance mechanosensitive channel, MscL AYR68_14960 PF00009 Elongation factor Tu GTP binding domain AYR68_14960 PF00679 Elongation factor G C-terminus AYR68_14960 PF03144 Elongation factor Tu domain 2 AYR68_14965 PF00860 Permease family AYR68_14970 PF05175 Methyltransferase small domain AYR68_14970 PF08468 Methyltransferase small domain N-terminal AYR68_14975 PF00324 Amino acid permease AYR68_14980 PF01139 tRNA-splicing ligase RtcB AYR68_14990 PF00691 OmpA family AYR68_14990 PF13505 Outer membrane protein beta-barrel domain AYR68_14995 PF12019 Type II transport protein GspH AYR68_15000 PF00108 Thiolase, N-terminal domain AYR68_15000 PF02803 Thiolase, C-terminal domain AYR68_15005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR68_15010 PF00893 Small Multidrug Resistance protein AYR68_15015 PF06073 AYR68_15015 AYR68_15020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYR68_15020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYR68_15025 PF01011 PQQ enzyme repeat AYR68_15025 PF13360 PQQ-like domain AYR68_15030 PF04966 Carbohydrate-selective porin, OprB family AYR68_15035 PF02515 CoA-transferase family III AYR68_15040 PF12625 AYR68_15040 AYR68_15040 PF12833 Helix-turn-helix domain AYR68_15045 PF00108 Thiolase, N-terminal domain AYR68_15045 PF02803 Thiolase, C-terminal domain AYR68_15050 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_15050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR68_15050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR68_15060 PF01734 Patatin-like phospholipase AYR68_15065 PF13673 Acetyltransferase (GNAT) domain AYR68_15075 PF03006 AYR68_15075 AYR68_15080 PF00083 Sugar (and other) transporter AYR68_15090 PF01043 SecA preprotein cross-linking domain AYR68_15090 PF02810 SEC-C motif AYR68_15090 PF07516 SecA Wing and Scaffold domain AYR68_15090 PF07517 SecA DEAD-like domain AYR68_15095 PF00578 AhpC/TSA family AYR68_15095 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYR68_15100 PF00753 Metallo-beta-lactamase superfamily AYR68_15105 PF00782 Dual specificity phosphatase, catalytic domain AYR68_15110 PF05036 Sporulation related domain AYR68_15115 PF08245 Mur ligase middle domain AYR68_15120 PF01039 Carboxyl transferase domain AYR68_15125 PF00290 Tryptophan synthase alpha chain AYR68_15130 PF12625 AYR68_15130 AYR68_15130 PF12833 Helix-turn-helix domain AYR68_15135 PF10118 AYR68_15135 AYR68_15140 PF10974 AYR68_15140 AYR68_15145 PF07566 Domain of Unknown Function (DUF1543) AYR68_15150 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_15155 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AYR68_15160 PF00593 TonB dependent receptor AYR68_15160 PF07715 TonB-dependent Receptor Plug Domain AYR68_15165 PF01923 Cobalamin adenosyltransferase AYR68_15170 PF03009 Glycerophosphoryl diester phosphodiesterase family AYR68_15175 PF03724 META domain AYR68_15180 PF00487 AYR68_15180 AYR68_15185 PF02696 AYR68_15185 AYR68_15190 PF00072 Response regulator receiver domain AYR68_15190 PF00486 Transcriptional regulatory protein, C terminal AYR68_15195 PF00512 His Kinase A (phospho-acceptor) domain AYR68_15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_15205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_15205 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_15205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_15205 PF12418 AYR68_15205 AYR68_15205 PF12806 AYR68_15205 AYR68_15210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_15210 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_15210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_15210 PF12418 AYR68_15210 AYR68_15210 PF12806 AYR68_15210 AYR68_15215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_15215 PF03466 LysR substrate binding domain AYR68_15220 PF00043 Glutathione S-transferase, C-terminal domain AYR68_15220 PF02798 Glutathione S-transferase, N-terminal domain AYR68_15225 PF06146 AYR68_15225 AYR68_15230 PF11776 Domain of unknown function (DUF3315) AYR68_15240 PF13091 PLD-like domain AYR68_15245 PF00593 TonB dependent receptor AYR68_15245 PF07715 TonB-dependent Receptor Plug Domain AYR68_15250 PF13803 AYR68_15250 AYR68_15255 PF00152 tRNA synthetases class II (D, K and N) AYR68_15255 PF01336 OB-fold nucleic acid binding domain AYR68_15255 PF02938 GAD domain AYR68_15260 PF11380 AYR68_15260 AYR68_15260 PF17102 AYR68_15260 AYR68_15275 PF01755 AYR68_15275 AYR68_15285 PF00534 Glycosyl transferases group 1 AYR68_15285 PF13439 Glycosyltransferase Family 4 AYR68_15290 PF00535 Glycosyl transferase family 2 AYR68_15295 PF01522 Polysaccharide deacetylase AYR68_15300 PF13524 Glycosyl transferases group 1 AYR68_15305 PF06258 AYR68_15305 AYR68_15310 PF01063 Aminotransferase class IV AYR68_15315 PF03710 Glutamate-ammonia ligase adenylyltransferase AYR68_15315 PF08335 GlnD PII-uridylyltransferase AYR68_15320 PF00512 His Kinase A (phospho-acceptor) domain AYR68_15320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_15330 PF07693 AYR68_15330 AYR68_15345 PF02547 Queuosine biosynthesis protein AYR68_15355 PF04011 LemA family AYR68_15360 PF01702 Queuine tRNA-ribosyltransferase AYR68_15365 PF02699 Preprotein translocase subunit AYR68_15370 PF02355 Protein export membrane protein AYR68_15370 PF07549 SecD/SecF GG Motif AYR68_15370 PF13721 SecD export protein N-terminal TM region AYR68_15375 PF02355 Protein export membrane protein AYR68_15375 PF07549 SecD/SecF GG Motif AYR68_15380 PF02441 Flavoprotein AYR68_15380 PF04127 DNA / pantothenate metabolism flavoprotein AYR68_15385 PF04002 RadC-like JAB domain AYR68_15390 PF01062 AYR68_15390 AYR68_15395 PF02811 PHP domain AYR68_15400 PF04279 AYR68_15400 AYR68_15405 PF03795 YCII-related domain AYR68_15415 PF01266 FAD dependent oxidoreductase AYR68_15415 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYR68_15420 PF00581 Rhodanese-like domain AYR68_15425 PF04461 Protein of unknown function (DUF520) AYR68_15430 PF14539 Domain of unknown function (DUF4442) AYR68_15435 PF03061 Thioesterase superfamily AYR68_15440 PF00085 Thioredoxin AYR68_15445 PF12146 Putative lysophospholipase AYR68_15450 PF04273 Putative phosphatase (DUF442) AYR68_15460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR68_15460 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_15490 PF13689 AYR68_15490 AYR68_15495 PF00990 GGDEF domain AYR68_15495 PF17152 AYR68_15495 AYR68_15500 PF00691 OmpA family AYR68_15505 PF00149 Calcineurin-like phosphoesterase AYR68_15510 PF13091 PLD-like domain AYR68_15515 PF01553 Acyltransferase AYR68_15520 PF01926 50S ribosome-binding GTPase AYR68_15520 PF13167 AYR68_15520 AYR68_15520 PF16360 AYR68_15520 AYR68_15530 PF04172 AYR68_15530 AYR68_15535 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AYR68_15540 PF00149 Calcineurin-like phosphoesterase AYR68_15545 PF00398 Ribosomal RNA adenine dimethylase AYR68_15550 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYR68_15555 PF00572 Ribosomal protein L13 AYR68_15560 PF00380 Ribosomal protein S9/S16 AYR68_15565 PF02798 Glutathione S-transferase, N-terminal domain AYR68_15570 PF04386 Stringent starvation protein B AYR68_15580 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AYR68_15580 PF00364 Biotin-requiring enzyme AYR68_15580 PF02785 Biotin carboxylase C-terminal domain AYR68_15580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR68_15585 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_15590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_15590 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_15590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_15595 PF01039 Carboxyl transferase domain AYR68_15600 PF13561 Enoyl-(Acyl carrier protein) reductase AYR68_15605 PF07287 AYR68_15605 AYR68_15610 PF00440 Bacterial regulatory proteins, tetR family AYR68_15615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_15615 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_15615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_15620 PF14066 AYR68_15620 AYR68_15625 PF09413 Domain of unknown function (DUF2007) AYR68_15660 PF01066 CDP-alcohol phosphatidyltransferase AYR68_15665 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AYR68_15670 PF13640 2OG-Fe(II) oxygenase superfamily AYR68_15680 PF10982 Protein of unknown function (DUF2789) AYR68_15685 PF00056 lactate/malate dehydrogenase, NAD binding domain AYR68_15685 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AYR68_15690 PF00445 Ribonuclease T2 family AYR68_15695 PF01464 Transglycosylase SLT domain AYR68_15700 PF00919 Uncharacterized protein family UPF0004 AYR68_15700 PF01938 TRAM domain AYR68_15700 PF04055 Radical SAM superfamily AYR68_15705 PF02562 PhoH-like protein AYR68_15710 PF02130 Uncharacterized protein family UPF0054 AYR68_15715 PF03544 Gram-negative bacterial TonB protein C-terminal AYR68_15725 PF11306 Protein of unknown function (DUF3108) AYR68_15735 PF03358 NADPH-dependent FMN reductase AYR68_15740 PF03631 AYR68_15740 AYR68_15745 PF00892 EamA-like transporter family AYR68_15750 PF02311 AraC-like ligand binding domain AYR68_15750 PF12833 Helix-turn-helix domain AYR68_15755 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYR68_15765 PF00881 Nitroreductase family AYR68_15780 PF12710 haloacid dehalogenase-like hydrolase AYR68_15800 PF00575 S1 RNA binding domain AYR68_15800 PF00773 RNB domain AYR68_15800 PF08206 Ribonuclease B OB domain AYR68_15805 PF01432 Peptidase family M3 AYR68_15810 PF09526 AYR68_15810 AYR68_15820 PF06808 AYR68_15820 AYR68_15825 PF01694 Rhomboid family AYR68_15840 PF03937 Flavinator of succinate dehydrogenase AYR68_15845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_15845 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_15845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_15850 PF00743 Flavin-binding monooxygenase-like AYR68_15850 PF13450 NAD(P)-binding Rossmann-like domain AYR68_15855 PF01196 Ribosomal protein L17 AYR68_15860 PF01000 RNA polymerase Rpb3/RpoA insert domain AYR68_15860 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYR68_15860 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYR68_15865 PF00163 Ribosomal protein S4/S9 N-terminal domain AYR68_15865 PF01479 S4 domain AYR68_15870 PF00411 Ribosomal protein S11 AYR68_15875 PF00416 Ribosomal protein S13/S18 AYR68_15880 PF00444 Ribosomal protein L36 AYR68_15885 PF00344 SecY translocase AYR68_15890 PF00828 Ribosomal protein L18e/L15 AYR68_15895 PF00327 Ribosomal protein L30p/L7e AYR68_15900 PF00333 Ribosomal protein S5, N-terminal domain AYR68_15900 PF03719 Ribosomal protein S5, C-terminal domain AYR68_15905 PF00861 Ribosomal L18p/L5e family AYR68_15910 PF00347 Ribosomal protein L6 AYR68_15915 PF00410 Ribosomal protein S8 AYR68_15920 PF00253 Ribosomal protein S14p/S29e AYR68_15925 PF00281 Ribosomal protein L5 AYR68_15925 PF00673 ribosomal L5P family C-terminus AYR68_15930 PF00467 KOW motif AYR68_15930 PF17136 AYR68_15930 AYR68_15935 PF00238 Ribosomal protein L14p/L23e AYR68_15940 PF00366 Ribosomal protein S17 AYR68_15945 PF00831 Ribosomal L29 protein AYR68_15950 PF00252 Ribosomal protein L16p/L10e AYR68_15955 PF00189 Ribosomal protein S3, C-terminal domain AYR68_15955 PF07650 KH domain AYR68_15960 PF00237 Ribosomal protein L22p/L17e AYR68_15965 PF00203 Ribosomal protein S19 AYR68_15970 PF00181 Ribosomal Proteins L2, RNA binding domain AYR68_15970 PF03947 Ribosomal Proteins L2, C-terminal domain AYR68_15975 PF00276 Ribosomal protein L23 AYR68_15980 PF00573 Ribosomal protein L4/L1 family AYR68_15985 PF00297 Ribosomal protein L3 AYR68_15990 PF00338 Ribosomal protein S10p/S20e AYR68_15995 PF00117 Glutamine amidotransferase class-I AYR68_16000 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR68_16005 PF05872 AYR68_16005 AYR68_16010 PF00042 Globin AYR68_16015 PF02082 Transcriptional regulator AYR68_16020 PF01926 50S ribosome-binding GTPase AYR68_16025 PF10118 AYR68_16025 AYR68_16030 PF00375 Sodium:dicarboxylate symporter family AYR68_16035 PF13622 Thioesterase-like superfamily AYR68_16040 PF01553 Acyltransferase AYR68_16050 PF13460 NADH(P)-binding AYR68_16055 PF00270 DEAD/DEAH box helicase AYR68_16055 PF00271 Helicase conserved C-terminal domain AYR68_16055 PF17191 AYR68_16055 AYR68_16060 PF00156 Phosphoribosyl transferase domain AYR68_16065 PF00293 NUDIX domain AYR68_16070 PF03641 Possible lysine decarboxylase AYR68_16075 PF01544 CorA-like Mg2+ transporter protein AYR68_16080 PF13466 STAS domain AYR68_16085 PF05494 Toluene tolerance, Ttg2 AYR68_16090 PF02470 AYR68_16090 AYR68_16095 PF02405 AYR68_16095 AYR68_16100 PF00005 ABC transporter AYR68_16110 PF00270 DEAD/DEAH box helicase AYR68_16110 PF00271 Helicase conserved C-terminal domain AYR68_16115 PF00459 Inositol monophosphatase family AYR68_16120 PF02779 Transketolase, pyrimidine binding domain AYR68_16120 PF02780 Transketolase, C-terminal domain AYR68_16120 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AYR68_16125 PF00925 GTP cyclohydrolase II AYR68_16130 PF01218 Coproporphyrinogen III oxidase AYR68_16135 PF01488 Shikimate / quinate 5-dehydrogenase AYR68_16135 PF08501 Shikimate dehydrogenase substrate binding domain AYR68_16145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_16145 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_16145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_16145 PF12418 AYR68_16145 AYR68_16145 PF12806 AYR68_16145 AYR68_16155 PF04024 AYR68_16155 AYR68_16160 PF00571 CBS domain AYR68_16160 PF04982 AYR68_16160 AYR68_16165 PF13566 AYR68_16165 AYR68_16175 PF07007 Protein of unknown function (DUF1311) AYR68_16185 PF02091 Glycyl-tRNA synthetase alpha subunit AYR68_16190 PF02092 AYR68_16190 AYR68_16190 PF05746 DALR anticodon binding domain AYR68_16195 PF03795 YCII-related domain AYR68_16200 PF00892 EamA-like transporter family AYR68_16205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_16205 PF03466 LysR substrate binding domain AYR68_16235 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AYR68_16240 PF04996 Succinylarginine dihydrolase AYR68_16245 PF00171 Aldehyde dehydrogenase family AYR68_16250 PF04958 Arginine N-succinyltransferase beta subunit AYR68_16255 PF00202 Aminotransferase class-III AYR68_16260 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYR68_16260 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYR68_16265 PF00324 Amino acid permease AYR68_16275 PF08241 Methyltransferase domain AYR68_16290 PF10107 AYR68_16290 AYR68_16295 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYR68_16300 PF01594 AYR68_16300 AYR68_16305 PF00080 Copper/zinc superoxide dismutase (SODC) AYR68_16310 PF12805 AYR68_16310 AYR68_16310 PF13515 AYR68_16310 AYR68_16315 PF07690 Major Facilitator Superfamily AYR68_16325 PF02525 Flavodoxin-like fold AYR68_16330 PF03992 Antibiotic biosynthesis monooxygenase AYR68_16340 PF01565 FAD binding domain AYR68_16340 PF02913 FAD linked oxidases, C-terminal domain AYR68_16345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR68_16345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR68_16350 PF00892 EamA-like transporter family AYR68_16355 PF00892 EamA-like transporter family AYR68_16360 PF01814 Hemerythrin HHE cation binding domain AYR68_16365 PF01609 Transposase DDE domain AYR68_16370 PF01609 Transposase DDE domain AYR68_16375 PF00905 Penicillin binding protein transpeptidase domain AYR68_16395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYR68_16400 PF10544 AYR68_16400 AYR68_16415 PF01609 Transposase DDE domain AYR68_16420 PF01609 Transposase DDE domain AYR68_16425 PF01925 AYR68_16425 AYR68_16430 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYR68_16430 PF09157 Pseudouridine synthase II TruB, C-terminal AYR68_16430 PF16198 AYR68_16430 AYR68_16435 PF03280 Proteobacterial lipase chaperone protein AYR68_16440 PF00561 alpha/beta hydrolase fold AYR68_16445 PF01245 Ribosomal protein L19 AYR68_16450 PF01746 tRNA (Guanine-1)-methyltransferase AYR68_16455 PF01782 RimM N-terminal domain AYR68_16455 PF05239 PRC-barrel domain AYR68_16460 PF00886 Ribosomal protein S16 AYR68_16465 PF07963 Prokaryotic N-terminal methylation motif AYR68_16465 PF16732 AYR68_16465 AYR68_16470 PF07963 Prokaryotic N-terminal methylation motif AYR68_16470 PF16732 AYR68_16470 AYR68_16475 PF05567 Neisseria PilC beta-propeller domain AYR68_16475 PF13519 von Willebrand factor type A domain AYR68_16485 PF07963 Prokaryotic N-terminal methylation motif AYR68_16485 PF16074 AYR68_16485 AYR68_16490 PF07963 Prokaryotic N-terminal methylation motif AYR68_16495 PF07963 Prokaryotic N-terminal methylation motif AYR68_16495 PF12019 Type II transport protein GspH AYR68_16500 PF02401 LytB protein AYR68_16505 PF00625 Guanylate kinase AYR68_16510 PF01192 RNA polymerase Rpb6 AYR68_16515 PF02824 TGS domain AYR68_16515 PF13328 HD domain AYR68_16520 PF01042 Endoribonuclease L-PSP AYR68_16525 PF04324 BFD-like [2Fe-2S] binding domain AYR68_16530 PF00210 Ferritin-like domain AYR68_16535 PF04932 AYR68_16535 AYR68_16535 PF11846 AYR68_16535 AYR68_16535 PF15864 AYR68_16535 AYR68_16540 PF07963 Prokaryotic N-terminal methylation motif AYR68_16545 PF04536 TLP18 AYR68_16550 PF04536 TLP18 AYR68_16555 PF04011 LemA family AYR68_16560 PF10118 AYR68_16560 AYR68_16565 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR68_16565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AYR68_16570 PF00310 Glutamine amidotransferases class-II AYR68_16570 PF01493 GXGXG motif AYR68_16570 PF01645 Conserved region in glutamate synthase AYR68_16570 PF04898 Glutamate synthase central domain AYR68_16580 PF01761 3-dehydroquinate synthase AYR68_16585 PF01202 Shikimate kinase AYR68_16590 PF00263 AYR68_16590 AYR68_16590 PF03958 Bacterial type II/III secretion system short domain AYR68_16590 PF07660 Secretin and TonB N terminus short domain AYR68_16590 PF11741 AMIN domain AYR68_16595 PF04351 Pilus assembly protein, PilP AYR68_16600 PF04350 Pilus assembly protein, PilO AYR68_16605 PF05137 AYR68_16605 AYR68_16610 PF11104 Type IV pilus assembly protein PilM; AYR68_16615 PF00905 Penicillin binding protein transpeptidase domain AYR68_16615 PF00912 Transglycosylase AYR68_16615 PF17092 AYR68_16615 AYR68_16620 PF08241 Methyltransferase domain AYR68_16630 PF00953 Glycosyl transferase family 4 AYR68_16635 PF01225 Mur ligase family, catalytic domain AYR68_16635 PF02875 Mur ligase family, glutamate ligase domain AYR68_16635 PF08245 Mur ligase middle domain AYR68_16640 PF02875 Mur ligase family, glutamate ligase domain AYR68_16640 PF08245 Mur ligase middle domain AYR68_16645 PF00905 Penicillin binding protein transpeptidase domain AYR68_16645 PF03717 Penicillin-binding Protein dimerisation domain AYR68_16650 PF04999 AYR68_16650 AYR68_16655 PF01795 MraW methylase family AYR68_16660 PF13531 Bacterial extracellular solute-binding protein AYR68_16670 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR68_16685 PF00324 Amino acid permease AYR68_16715 PF01545 Cation efflux family AYR68_16720 PF00873 AcrB/AcrD/AcrF family AYR68_16725 PF16576 AYR68_16725 AYR68_16730 PF02321 Outer membrane efflux protein AYR68_16740 PF04191 Phospholipid methyltransferase AYR68_16760 PF08238 Sel1 repeat AYR68_16765 PF00005 ABC transporter AYR68_16765 PF12848 ABC transporter AYR68_16770 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR68_16775 PF00106 short chain dehydrogenase AYR68_16780 PF00484 Carbonic anhydrase AYR68_16780 PF00916 AYR68_16780 AYR68_16785 PF00575 S1 RNA binding domain AYR68_16785 PF09371 Tex-like protein N-terminal domain AYR68_16785 PF12836 Helix-hairpin-helix motif AYR68_16785 PF16921 AYR68_16785 AYR68_16790 PF00072 Response regulator receiver domain AYR68_16790 PF00486 Transcriptional regulatory protein, C terminal AYR68_16795 PF00512 His Kinase A (phospho-acceptor) domain AYR68_16795 PF00672 HAMP domain AYR68_16795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_16800 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AYR68_16800 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AYR68_16805 PF00583 Acetyltransferase (GNAT) family AYR68_16820 PF12568 Acetyltransferase (GNAT) domain AYR68_16825 PF00475 Imidazoleglycerol-phosphate dehydratase AYR68_16830 PF00117 Glutamine amidotransferase class-I AYR68_16835 PF05656 AYR68_16835 AYR68_16840 PF01612 3'-5' exonuclease AYR68_16845 PF00977 Histidine biosynthesis protein AYR68_16850 PF01381 Helix-turn-helix AYR68_16850 PF07883 Cupin domain AYR68_16855 PF00892 EamA-like transporter family AYR68_16860 PF03992 Antibiotic biosynthesis monooxygenase AYR68_16870 PF00313 'Cold-shock' DNA-binding domain AYR68_16870 PF06961 AYR68_16870 AYR68_16875 PF01636 Phosphotransferase enzyme family AYR68_16880 PF00977 Histidine biosynthesis protein AYR68_16890 PF12625 AYR68_16890 AYR68_16890 PF12833 Helix-turn-helix domain AYR68_16895 PF00230 Major intrinsic protein AYR68_16905 PF01810 AYR68_16905 AYR68_16910 PF01223 DNA/RNA non-specific endonuclease AYR68_16920 PF02705 AYR68_16920 AYR68_16940 PF02525 Flavodoxin-like fold AYR68_16945 PF01638 HxlR-like helix-turn-helix AYR68_16960 PF08238 Sel1 repeat AYR68_16965 PF00440 Bacterial regulatory proteins, tetR family AYR68_16970 PF12833 Helix-turn-helix domain AYR68_16975 PF00248 Aldo/keto reductase family AYR68_16990 PF00892 EamA-like transporter family AYR68_16995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_16995 PF03466 LysR substrate binding domain AYR68_17000 PF07690 Major Facilitator Superfamily AYR68_17010 PF04828 Glutathione-dependent formaldehyde-activating enzyme AYR68_17015 PF13489 Methyltransferase domain AYR68_17020 PF01593 Flavin containing amine oxidoreductase AYR68_17025 PF02678 Pirin AYR68_17025 PF05726 Pirin C-terminal cupin domain AYR68_17030 PF00857 Isochorismatase family AYR68_17035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_17035 PF03466 LysR substrate binding domain AYR68_17040 PF00171 Aldehyde dehydrogenase family AYR68_17045 PF00202 Aminotransferase class-III AYR68_17050 PF00155 Aminotransferase class I and II AYR68_17050 PF00392 Bacterial regulatory proteins, gntR family AYR68_17055 PF00324 Amino acid permease AYR68_17060 PF01381 Helix-turn-helix AYR68_17060 PF07883 Cupin domain AYR68_17065 PF03591 AYR68_17065 AYR68_17070 PF05437 AYR68_17070 AYR68_17075 PF00436 Single-strand binding protein family AYR68_17080 PF07690 Major Facilitator Superfamily AYR68_17085 PF04332 AYR68_17085 AYR68_17090 PF03070 TENA/THI-4/PQQC family AYR68_17095 PF06942 AYR68_17095 AYR68_17100 PF06993 AYR68_17100 AYR68_17105 PF00107 Zinc-binding dehydrogenase AYR68_17105 PF08240 Alcohol dehydrogenase GroES-like domain AYR68_17110 PF00440 Bacterial regulatory proteins, tetR family AYR68_17110 PF16925 AYR68_17110 AYR68_17115 PF00005 ABC transporter AYR68_17120 PF13401 AAA domain AYR68_17125 PF00990 GGDEF domain AYR68_17130 PF16956 AYR68_17130 AYR68_17135 PF02028 BCCT family transporter AYR68_17140 PF07885 Ion channel AYR68_17145 PF00474 Sodium:solute symporter family AYR68_17150 PF04341 AYR68_17150 AYR68_17155 PF00072 Response regulator receiver domain AYR68_17155 PF00512 His Kinase A (phospho-acceptor) domain AYR68_17155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_17155 PF12860 AYR68_17155 AYR68_17165 PF00072 Response regulator receiver domain AYR68_17165 PF00196 Bacterial regulatory proteins, luxR family AYR68_17170 PF03358 NADPH-dependent FMN reductase AYR68_17175 PF00296 Luciferase-like monooxygenase AYR68_17180 PF00872 AYR68_17180 AYR68_17185 PF13412 Winged helix-turn-helix DNA-binding AYR68_17190 PF00857 Isochorismatase family AYR68_17195 PF00501 AMP-binding enzyme AYR68_17195 PF13193 AMP-binding enzyme C-terminal domain AYR68_17195 PF16177 AYR68_17195 AYR68_17200 PF05656 AYR68_17200 AYR68_17205 PF00924 Mechanosensitive ion channel AYR68_17210 PF04452 RNA methyltransferase AYR68_17215 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYR68_17220 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR68_17225 PF12840 Helix-turn-helix domain AYR68_17230 PF00472 RF-1 domain AYR68_17230 PF03462 PCRF domain AYR68_17235 PF16956 AYR68_17235 AYR68_17240 PF01368 DHH family AYR68_17240 PF02272 DHHA1 domain AYR68_17245 PF01243 Pyridoxamine 5'-phosphate oxidase AYR68_17245 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AYR68_17250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR68_17250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR68_17250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR68_17250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR68_17255 PF00478 IMP dehydrogenase / GMP reductase domain AYR68_17255 PF00571 CBS domain AYR68_17260 PF03692 AYR68_17260 AYR68_17265 PF00753 Metallo-beta-lactamase superfamily AYR68_17270 PF00593 TonB dependent receptor AYR68_17270 PF07715 TonB-dependent Receptor Plug Domain AYR68_17275 PF01169 AYR68_17275 AYR68_17285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR68_17285 PF00364 Biotin-requiring enzyme AYR68_17285 PF02817 e3 binding domain AYR68_17290 PF00456 Transketolase, thiamine diphosphate binding domain AYR68_17295 PF01551 Peptidase family M23 AYR68_17300 PF05258 AYR68_17300 AYR68_17305 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AYR68_17310 PF00091 Tubulin/FtsZ family, GTPase domain AYR68_17310 PF12327 FtsZ family, C-terminal domain AYR68_17315 PF02491 SHS2 domain inserted in FTSA AYR68_17315 PF14450 Cell division protein FtsA AYR68_17320 PF03799 Cell division protein FtsQ AYR68_17320 PF08478 POTRA domain, FtsQ-type AYR68_17325 PF01820 D-ala D-ala ligase N-terminus AYR68_17325 PF07478 D-ala D-ala ligase C-terminus AYR68_17330 PF01225 Mur ligase family, catalytic domain AYR68_17330 PF02875 Mur ligase family, glutamate ligase domain AYR68_17330 PF08245 Mur ligase middle domain AYR68_17335 PF03033 Glycosyltransferase family 28 N-terminal domain AYR68_17335 PF04101 Glycosyltransferase family 28 C-terminal domain AYR68_17340 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYR68_17340 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYR68_17345 PF08410 AYR68_17345 AYR68_17350 PF00593 TonB dependent receptor AYR68_17350 PF07715 TonB-dependent Receptor Plug Domain AYR68_17355 PF00156 Phosphoribosyl transferase domain AYR68_17360 PF03372 Endonuclease/Exonuclease/phosphatase family AYR68_17365 PF03960 ArsC family AYR68_17370 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AYR68_17375 PF07859 alpha/beta hydrolase fold AYR68_17380 PF00990 GGDEF domain AYR68_17385 PF00085 Thioredoxin AYR68_17385 PF02683 AYR68_17385 AYR68_17385 PF11412 Disulphide bond corrector protein DsbC AYR68_17390 PF13557 AYR68_17390 AYR68_17400 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYR68_17405 PF01522 Polysaccharide deacetylase AYR68_17410 PF09349 OHCU decarboxylase AYR68_17415 PF00576 HIUase/Transthyretin family AYR68_17420 PF00860 Permease family AYR68_17425 PF03502 Nucleoside-specific channel-forming protein, Tsx AYR68_17430 PF01494 FAD binding domain AYR68_17435 PF03561 Allantoicase repeat AYR68_17440 PF04115 Ureidoglycolate hydrolase AYR68_17445 PF00106 short chain dehydrogenase AYR68_17450 PF00204 DNA gyrase B AYR68_17450 PF00986 DNA gyrase B subunit, carboxyl terminus AYR68_17450 PF01751 Toprim domain AYR68_17450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_17455 PF05728 Uncharacterised protein family (UPF0227) AYR68_17460 PF07819 PGAP1-like protein AYR68_17470 PF01551 Peptidase family M23 AYR68_17475 PF01476 LysM domain AYR68_17480 PF05954 Phage late control gene D protein (GPD) AYR68_17480 PF10106 AYR68_17480 AYR68_17480 PF13296 AYR68_17480 AYR68_17485 PF02600 Disulfide bond formation protein DsbB AYR68_17490 PF04262 Glutamate-cysteine ligase AYR68_17495 PF06041 Bacterial protein of unknown function (DUF924) AYR68_17505 PF04286 AYR68_17505 AYR68_17510 PF00155 Aminotransferase class I and II AYR68_17515 PF01554 MatE AYR68_17520 PF00106 short chain dehydrogenase AYR68_17530 PF00072 Response regulator receiver domain AYR68_17530 PF00486 Transcriptional regulatory protein, C terminal AYR68_17535 PF00512 His Kinase A (phospho-acceptor) domain AYR68_17535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR68_17535 PF11808 AYR68_17535 AYR68_17535 PF13188 PAS domain AYR68_17540 PF03583 Secretory lipase AYR68_17545 PF13531 Bacterial extracellular solute-binding protein AYR68_17555 PF03069 Acetamidase/Formamidase family AYR68_17560 PF02666 AYR68_17560 AYR68_17565 PF00581 Rhodanese-like domain AYR68_17570 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYR68_17575 PF02580 D-Tyr-tRNA(Tyr) deacylase AYR68_17590 PF12710 haloacid dehalogenase-like hydrolase AYR68_17590 PF13740 ACT domain AYR68_17600 PF00925 GTP cyclohydrolase II AYR68_17600 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYR68_17605 PF00885 6,7-dimethyl-8-ribityllumazine synthase AYR68_17610 PF01029 NusB family AYR68_17615 PF00586 AIR synthase related protein, N-terminal domain AYR68_17615 PF02769 AIR synthase related protein, C-terminal domain AYR68_17620 PF04608 Phosphatidylglycerophosphatase A AYR68_17625 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_17625 PF12804 MobA-like NTP transferase domain AYR68_17625 PF14602 Hexapeptide repeat of succinyl-transferase AYR68_17630 PF01380 SIS domain AYR68_17630 PF13522 Glutamine amidotransferase domain AYR68_17635 PF01177 Asp/Glu/Hydantoin racemase AYR68_17640 PF13419 Haloacid dehalogenase-like hydrolase AYR68_17645 PF01609 Transposase DDE domain AYR68_17650 PF01609 Transposase DDE domain AYR68_17665 PF01609 Transposase DDE domain AYR68_17670 PF01609 Transposase DDE domain AYR68_17675 PF05621 AYR68_17675 AYR68_17680 PF00665 Integrase core domain AYR68_17680 PF09299 Mu transposase, C-terminal AYR68_17685 PF08721 TnsA endonuclease C terminal AYR68_17685 PF08722 TnsA endonuclease N terminal AYR68_17690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR68_17695 PF00809 Pterin binding enzyme AYR68_17700 PF01609 Transposase DDE domain AYR68_17705 PF01609 Transposase DDE domain AYR68_17715 PF00665 Integrase core domain AYR68_17715 PF09299 Mu transposase, C-terminal AYR68_17720 PF08721 TnsA endonuclease C terminal AYR68_17720 PF08722 TnsA endonuclease N terminal AYR68_17740 PF00589 Phage integrase family AYR68_17740 PF02899 Phage integrase, N-terminal SAM-like domain AYR68_17750 PF06414 Zeta toxin AYR68_17770 PF00916 AYR68_17770 AYR68_17770 PF01740 STAS domain AYR68_17775 PF00582 Universal stress protein family AYR68_17790 PF05621 AYR68_17790 AYR68_17795 PF00665 Integrase core domain AYR68_17795 PF09299 Mu transposase, C-terminal AYR68_17800 PF08721 TnsA endonuclease C terminal AYR68_17800 PF08722 TnsA endonuclease N terminal AYR68_17810 PF00155 Aminotransferase class I and II AYR68_17810 PF00392 Bacterial regulatory proteins, gntR family AYR68_17815 PF00596 Class II Aldolase and Adducin N-terminal domain AYR68_17820 PF00701 Dihydrodipicolinate synthetase family AYR68_17825 PF09694 AYR68_17825 AYR68_17830 PF03573 outer membrane porin, OprD family AYR68_17835 PF00719 Inorganic pyrophosphatase AYR68_17840 PF01124 MAPEG family AYR68_17850 PF00501 AMP-binding enzyme AYR68_17850 PF13193 AMP-binding enzyme C-terminal domain AYR68_17855 PF00521 DNA gyrase/topoisomerase IV, subunit A AYR68_17855 PF03989 DNA gyrase C-terminal domain, beta-propeller AYR68_17860 PF00083 Sugar (and other) transporter AYR68_17865 PF03458 AYR68_17865 AYR68_17870 PF02810 SEC-C motif AYR68_17875 PF00571 CBS domain AYR68_17875 PF03471 Transporter associated domain AYR68_17875 PF03741 AYR68_17875 AYR68_17880 PF03641 Possible lysine decarboxylase AYR68_17885 PF07690 Major Facilitator Superfamily AYR68_17890 PF01183 Glycosyl hydrolases family 25 AYR68_17895 PF00817 impB/mucB/samB family AYR68_17895 PF11798 IMS family HHH motif AYR68_17895 PF11799 impB/mucB/samB family C-terminal domain AYR68_17900 PF01042 Endoribonuclease L-PSP AYR68_17905 PF10881 AYR68_17905 AYR68_17910 PF04055 Radical SAM superfamily AYR68_17910 PF08497 AYR68_17910 AYR68_17910 PF11842 AYR68_17910 AYR68_17915 PF13449 Esterase-like activity of phytase AYR68_17920 PF13411 MerR HTH family regulatory protein AYR68_17925 PF11158 AYR68_17925 AYR68_17930 PF03358 NADPH-dependent FMN reductase AYR68_17935 PF01464 Transglycosylase SLT domain AYR68_17940 PF00291 Pyridoxal-phosphate dependent enzyme AYR68_17945 PF13527 Acetyltransferase (GNAT) domain AYR68_17975 PF00440 Bacterial regulatory proteins, tetR family AYR68_17980 PF09995 AYR68_17980 AYR68_17990 PF00593 TonB dependent receptor AYR68_17990 PF07715 TonB-dependent Receptor Plug Domain AYR68_17995 PF11162 AYR68_17995 AYR68_18000 PF01327 Polypeptide deformylase AYR68_18005 PF01476 LysM domain AYR68_18010 PF02481 DNA recombination-mediator protein A AYR68_18015 PF01300 Telomere recombination AYR68_18020 PF00892 EamA-like transporter family AYR68_18025 PF00440 Bacterial regulatory proteins, tetR family AYR68_18030 PF07690 Major Facilitator Superfamily AYR68_18035 PF12833 Helix-turn-helix domain AYR68_18040 PF00255 Glutathione peroxidase AYR68_18050 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYR68_18055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR68_18055 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYR68_18060 PF00231 ATP synthase AYR68_18065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR68_18065 PF00306 ATP synthase alpha/beta chain, C terminal domain AYR68_18065 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYR68_18070 PF00213 ATP synthase delta (OSCP) subunit AYR68_18075 PF00430 ATP synthase B/B' CF(0) AYR68_18080 PF00137 ATP synthase subunit C AYR68_18085 PF00119 ATP synthase A chain AYR68_18090 PF03899 AYR68_18090 AYR68_18095 PF01297 Periplasmic solute binding protein family AYR68_18100 PF01475 Ferric uptake regulator family AYR68_18105 PF00005 ABC transporter AYR68_18110 PF00950 AYR68_18110 AYR68_18115 PF01810 AYR68_18115 AYR68_18120 PF04261 Dyp-type peroxidase family AYR68_18130 PF00390 Malic enzyme, N-terminal domain AYR68_18130 PF03949 Malic enzyme, NAD binding domain AYR68_18135 PF00750 tRNA synthetases class I (R) AYR68_18135 PF03485 Arginyl tRNA synthetase N terminal domain AYR68_18135 PF05746 DALR anticodon binding domain AYR68_18140 PF05036 Sporulation related domain AYR68_18145 PF02798 Glutathione S-transferase, N-terminal domain AYR68_18145 PF14497 Glutathione S-transferase, C-terminal domain AYR68_18150 PF02566 OsmC-like protein AYR68_18155 PF02678 Pirin AYR68_18155 PF05726 Pirin C-terminal cupin domain AYR68_18160 PF12977 Domain of Unknown Function with PDB structure (DUF3861) AYR68_18165 PF03551 Transcriptional regulator PadR-like family AYR68_18170 PF01909 Nucleotidyltransferase domain AYR68_18170 PF13427 AYR68_18170 AYR68_18175 PF00117 Glutamine amidotransferase class-I AYR68_18175 PF00958 GMP synthase C terminal domain AYR68_18175 PF02540 NAD synthase AYR68_18180 PF04286 AYR68_18180 AYR68_18185 PF07681 AYR68_18185 AYR68_18190 PF09335 AYR68_18190 AYR68_18195 PF01810 AYR68_18195 AYR68_18205 PF13614 AAA domain AYR68_18210 PF04247 AYR68_18210 AYR68_18215 PF01722 BolA-like protein AYR68_18230 PF01648 4'-phosphopantetheinyl transferase superfamily AYR68_18235 PF01370 NAD dependent epimerase/dehydratase family AYR68_18235 PF12697 Alpha/beta hydrolase family AYR68_18245 PF03176 MMPL family AYR68_18245 PF10604 Polyketide cyclase / dehydrase and lipid transport AYR68_18245 PF17131 AYR68_18245 AYR68_18250 PF00501 AMP-binding enzyme AYR68_18250 PF00550 Phosphopantetheine attachment site AYR68_18250 PF00975 Thioesterase domain AYR68_18250 PF13193 AMP-binding enzyme C-terminal domain AYR68_18255 PF00668 Condensation domain AYR68_18260 PF00550 Phosphopantetheine attachment site AYR68_18265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_18265 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_18270 PF00501 AMP-binding enzyme AYR68_18275 PF00196 Bacterial regulatory proteins, luxR family AYR68_18275 PF03472 Autoinducer binding domain AYR68_18280 PF16245 AYR68_18280 AYR68_18285 PF00765 Autoinducer synthetase AYR68_18290 PF07690 Major Facilitator Superfamily AYR68_18295 PF16113 AYR68_18295 AYR68_18300 PF00378 Enoyl-CoA hydratase/isomerase family AYR68_18305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR68_18305 PF02770 Acyl-CoA dehydrogenase, middle domain AYR68_18305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR68_18310 PF00501 AMP-binding enzyme AYR68_18310 PF13193 AMP-binding enzyme C-terminal domain AYR68_18315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR68_18315 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR68_18320 PF00171 Aldehyde dehydrogenase family AYR68_18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_18325 PF03466 LysR substrate binding domain AYR68_18330 PF00324 Amino acid permease AYR68_18335 PF00324 Amino acid permease AYR68_18340 PF01042 Endoribonuclease L-PSP AYR68_18345 PF00842 Alanine racemase, C-terminal domain AYR68_18345 PF01168 Alanine racemase, N-terminal domain AYR68_18350 PF01266 FAD dependent oxidoreductase AYR68_18355 PF01037 AsnC family AYR68_18355 PF13412 Winged helix-turn-helix DNA-binding AYR68_18360 PF07786 AYR68_18360 AYR68_18365 PF00593 TonB dependent receptor AYR68_18365 PF07715 TonB-dependent Receptor Plug Domain AYR68_18370 PF12680 SnoaL-like domain AYR68_18375 PF06877 Regulator of ribonuclease activity B AYR68_18380 PF00849 RNA pseudouridylate synthase AYR68_18385 PF06210 AYR68_18385 AYR68_18390 PF07690 Major Facilitator Superfamily AYR68_18395 PF00440 Bacterial regulatory proteins, tetR family AYR68_18395 PF16925 AYR68_18395 AYR68_18400 PF00106 short chain dehydrogenase AYR68_18405 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR68_18405 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR68_18410 PF00293 NUDIX domain AYR68_18415 PF00583 Acetyltransferase (GNAT) family AYR68_18420 PF13548 AYR68_18420 AYR68_18430 PF00330 Aconitase family (aconitate hydratase) AYR68_18430 PF00694 Aconitase C-terminal domain AYR68_18435 PF00285 Citrate synthase AYR68_18440 PF13714 Phosphoenolpyruvate phosphomutase AYR68_18445 PF00392 Bacterial regulatory proteins, gntR family AYR68_18445 PF07729 FCD domain AYR68_18450 PF00155 Aminotransferase class I and II AYR68_18455 PF01565 FAD binding domain AYR68_18455 PF09330 D-lactate dehydrogenase, membrane binding AYR68_18460 PF01070 FMN-dependent dehydrogenase AYR68_18465 PF00392 Bacterial regulatory proteins, gntR family AYR68_18465 PF07729 FCD domain AYR68_18470 PF02652 AYR68_18470 AYR68_18475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR68_18475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR68_18475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR68_18475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR68_18480 PF16363 AYR68_18480 AYR68_18485 PF00342 Phosphoglucose isomerase AYR68_18490 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYR68_18490 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYR68_18495 PF00483 Nucleotidyl transferase AYR68_18500 PF02719 Polysaccharide biosynthesis protein AYR68_18500 PF13727 CoA-binding domain AYR68_18505 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYR68_18510 PF00132 Bacterial transferase hexapeptide (six repeats) AYR68_18515 PF02397 AYR68_18515 AYR68_18520 PF00534 Glycosyl transferases group 1 AYR68_18520 PF13579 Glycosyl transferase 4-like domain AYR68_18525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYR68_18525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYR68_18525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYR68_18530 PF00535 Glycosyl transferase family 2 AYR68_18540 PF00535 Glycosyl transferase family 2 AYR68_18545 PF04230 AYR68_18545 AYR68_18550 PF01943 AYR68_18550 AYR68_18555 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYR68_18555 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYR68_18555 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYR68_18560 PF02563 Polysaccharide biosynthesis/export protein AYR68_18565 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYR68_18570 PF02706 Chain length determinant protein AYR68_18570 PF13614 AAA domain AYR68_18570 PF13807 AYR68_18570 AYR68_18575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR68_18575 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYR68_18580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR68_18580 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYR68_18585 PF03023 AYR68_18585 AYR68_18590 PF01510 N-acetylmuramoyl-L-alanine amidase AYR68_18595 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYR68_18595 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYR68_18605 PF04185 Phosphoesterase family AYR68_18605 PF05506 AYR68_18605 AYR68_18610 PF01138 3' exoribonuclease family, domain 1 AYR68_18610 PF03725 3' exoribonuclease family, domain 2 AYR68_18615 PF00487 AYR68_18615 AYR68_18620 PF00175 Oxidoreductase NAD-binding domain AYR68_18620 PF00970 Oxidoreductase FAD-binding domain AYR68_18625 PF00440 Bacterial regulatory proteins, tetR family AYR68_18630 PF00440 Bacterial regulatory proteins, tetR family AYR68_18635 PF01323 DSBA-like thioredoxin domain AYR68_18640 PF13489 Methyltransferase domain AYR68_18645 PF13419 Haloacid dehalogenase-like hydrolase AYR68_18650 PF00106 short chain dehydrogenase AYR68_18655 PF11776 Domain of unknown function (DUF3315) AYR68_18660 PF11776 Domain of unknown function (DUF3315) AYR68_18665 PF00583 Acetyltransferase (GNAT) family AYR68_18665 PF00696 Amino acid kinase family AYR68_18670 PF09084 NMT1/THI5 like AYR68_18675 PF13379 NMT1-like family AYR68_18680 PF00296 Luciferase-like monooxygenase AYR68_18685 PF00528 Binding-protein-dependent transport system inner membrane component AYR68_18690 PF00005 ABC transporter AYR68_18695 PF00440 Bacterial regulatory proteins, tetR family AYR68_18695 PF08362 YcdC-like protein, C-terminal region AYR68_18700 PF01048 Phosphorylase superfamily AYR68_18705 PF03595 Voltage-dependent anion channel AYR68_18710 PF01687 Riboflavin kinase AYR68_18710 PF06574 FAD synthetase AYR68_18715 PF00133 tRNA synthetases class I (I, L, M and V) AYR68_18715 PF06827 Zinc finger found in FPG and IleRS AYR68_18715 PF08264 Anticodon-binding domain of tRNA AYR68_18720 PF01252 AYR68_18720 AYR68_18725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR68_18730 PF03358 NADPH-dependent FMN reductase AYR68_18735 PF12796 Ankyrin repeats (3 copies) AYR68_18765 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYR68_18770 PF07859 alpha/beta hydrolase fold AYR68_18790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR68_18790 PF03466 LysR substrate binding domain AYR68_18795 PF01025 GrpE AYR68_18800 PF00012 Hsp70 protein AYR68_18805 PF00413 Matrixin AYR68_18810 PF00413 Matrixin AYR68_18820 PF01471 Putative peptidoglycan binding domain AYR68_18820 PF13406 Transglycosylase SLT domain AYR68_18825 PF02222 ATP-grasp domain AYR68_18830 PF00731 AIR carboxylase AYR68_18835 PF04342 AYR68_18835 AYR68_18840 PF01225 Mur ligase family, catalytic domain AYR68_18840 PF02875 Mur ligase family, glutamate ligase domain AYR68_18840 PF08245 Mur ligase middle domain AYR68_18845 PF06772 AYR68_18845 AYR68_18850 PF01569 PAP2 superfamily AYR68_18855 PF03741 AYR68_18855 AYR68_18865 PF03738 Glutathionylspermidine synthase preATP-grasp AYR68_18870 PF00355 Rieske [2Fe-2S] domain AYR68_18875 PF01979 Amidohydrolase family AYR68_18885 PF00156 Phosphoribosyl transferase domain AYR68_18890 PF04226 AYR68_18890 AYR68_18895 PF10411 Disulfide bond isomerase protein N-terminus AYR68_18895 PF13098 Thioredoxin-like domain AYR68_18900 PF01545 Cation efflux family AYR68_18905 PF02583 Metal-sensitive transcriptional repressor AYR68_18910 PF01926 50S ribosome-binding GTPase AYR68_18910 PF10396 GTP-binding protein TrmE N-terminus AYR68_18910 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AYR68_18915 PF02096 60Kd inner membrane protein AYR68_18915 PF14849 YidC periplasmic domain AYR68_18920 PF01809 AYR68_18920 AYR68_18925 PF00825 Ribonuclease P AYR68_18930 PF00468 Ribosomal protein L34