locus-tag class description AYR67_00005 PF08299 Bacterial dnaA protein helix-turn-helix AYR67_00005 PF11638 DnaA N-terminal domain AYR67_00005 PF00308 Bacterial dnaA protein AYR67_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AYR67_00010 PF02767 DNA polymerase III beta subunit, central domain AYR67_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AYR67_00015 PF02463 RecF/RecN/SMC N terminal domain AYR67_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_00020 PF00204 DNA gyrase B AYR67_00020 PF18053 DNA gyrase B subunit insert domain AYR67_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AYR67_00020 PF01751 Toprim domain AYR67_00030 PF09335 SNARE associated Golgi protein AYR67_00035 PF00005 ABC transporter AYR67_00035 PF12848 ABC transporter AYR67_00055 PF01521 Iron-sulphur cluster biosynthesis AYR67_00060 PF00561 alpha/beta hydrolase fold AYR67_00065 PF03702 Anhydro-N-acetylmuramic acid kinase AYR67_00070 PF00579 tRNA synthetases class I (W and Y) AYR67_00110 PF00209 Sodium:neurotransmitter symporter family AYR67_00120 PF01189 16S rRNA methyltransferase RsmB/F AYR67_00120 PF01029 NusB family AYR67_00125 PF00551 Formyl transferase AYR67_00125 PF02911 Formyl transferase, C-terminal domain AYR67_00130 PF00920 Dehydratase family AYR67_00145 PF03466 LysR substrate binding domain AYR67_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_00150 PF00860 Permease family AYR67_00155 PF00311 Phosphoenolpyruvate carboxylase AYR67_00160 PF00440 Bacterial regulatory proteins, tetR family AYR67_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region AYR67_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR67_00170 PF00873 AcrB/AcrD/AcrF family AYR67_00180 PF00684 DnaJ central domain AYR67_00180 PF01556 DnaJ C terminal domain AYR67_00180 PF00226 DnaJ domain AYR67_00190 PF01113 Dihydrodipicolinate reductase, N-terminus AYR67_00190 PF05173 Dihydrodipicolinate reductase, C-terminus AYR67_00200 PF07690 Major Facilitator Superfamily AYR67_00205 PF00248 Aldo/keto reductase family AYR67_00210 PF03466 LysR substrate binding domain AYR67_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_00220 PF00155 Aminotransferase class I and II AYR67_00220 PF00392 Bacterial regulatory proteins, gntR family AYR67_00225 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_00225 PF00107 Zinc-binding dehydrogenase AYR67_00230 PF03352 Methyladenine glycosylase AYR67_00245 PF14815 NUDIX domain AYR67_00245 PF00730 HhH-GPD superfamily base excision DNA repair protein AYR67_00245 PF00633 Helix-hairpin-helix motif AYR67_00245 PF10576 Iron-sulfur binding domain of endonuclease III AYR67_00260 PF07043 Protein of unknown function (DUF1328) AYR67_00265 PF03692 Putative zinc- or iron-chelating domain AYR67_00270 PF07995 Glucose / Sorbosone dehydrogenase AYR67_00275 PF00004 ATPase family associated with various cellular activities (AAA) AYR67_00275 PF16193 AAA C-terminal domain AYR67_00275 PF12002 MgsA AAA+ ATPase C terminal AYR67_00280 PF01226 Formate/nitrite transporter AYR67_00290 PF01259 SAICAR synthetase AYR67_00300 PF00701 Dihydrodipicolinate synthetase family AYR67_00305 PF00857 Isochorismatase family AYR67_00310 PF01758 Sodium Bile acid symporter family AYR67_00315 PF01554 MatE AYR67_00320 PF04463 Protein of unknown function (DUF523) AYR67_00325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR67_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR67_00340 PF14497 Glutathione S-transferase, C-terminal domain AYR67_00340 PF02798 Glutathione S-transferase, N-terminal domain AYR67_00350 PF00324 Amino acid permease AYR67_00360 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYR67_00360 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYR67_00370 PF07702 UTRA domain AYR67_00370 PF00392 Bacterial regulatory proteins, gntR family AYR67_00375 PF05962 HutD AYR67_00380 PF01175 Urocanase Rossmann-like domain AYR67_00380 PF17392 Urocanase C-terminal domain AYR67_00380 PF17391 Urocanase N-terminal domain AYR67_00385 PF00221 Aromatic amino acid lyase AYR67_00390 PF00324 Amino acid permease AYR67_00395 PF01979 Amidohydrolase family AYR67_00400 PF00491 Arginase family AYR67_00410 PF13419 Haloacid dehalogenase-like hydrolase AYR67_00415 PF01177 Asp/Glu/Hydantoin racemase AYR67_00420 PF01380 SIS domain AYR67_00425 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_00425 PF14602 Hexapeptide repeat of succinyl-transferase AYR67_00425 PF12804 MobA-like NTP transferase domain AYR67_00430 PF04608 Phosphatidylglycerophosphatase A AYR67_00435 PF02769 AIR synthase related protein, C-terminal domain AYR67_00435 PF00586 AIR synthase related protein, N-terminal domain AYR67_00440 PF01029 NusB family AYR67_00445 PF00885 6,7-dimethyl-8-ribityllumazine synthase AYR67_00450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYR67_00450 PF00925 GTP cyclohydrolase II AYR67_00475 PF02580 D-Tyr-tRNA(Tyr) deacylase AYR67_00480 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AYR67_00480 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYR67_00485 PF00581 Rhodanese-like domain AYR67_00490 PF02666 Phosphatidylserine decarboxylase AYR67_00500 PF11808 Phosphate regulon sensor protein PhoR AYR67_00500 PF00989 PAS fold AYR67_00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_00500 PF00512 His Kinase A (phospho-acceptor) domain AYR67_00505 PF00072 Response regulator receiver domain AYR67_00505 PF00486 Transcriptional regulatory protein, C terminal AYR67_00515 PF00106 short chain dehydrogenase AYR67_00520 PF01554 MatE AYR67_00525 PF00155 Aminotransferase class I and II AYR67_00530 PF04286 Protein of unknown function (DUF445) AYR67_00545 PF04262 Glutamate-cysteine ligase AYR67_00550 PF02600 Disulfide bond formation protein DsbB AYR67_00560 PF13737 Transposase DDE domain AYR67_00570 PF00204 DNA gyrase B AYR67_00570 PF01751 Toprim domain AYR67_00570 PF00986 DNA gyrase B subunit, carboxyl terminus AYR67_00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_00575 PF00106 short chain dehydrogenase AYR67_00580 PF04115 Ureidoglycolate lyase AYR67_00585 PF03561 Allantoicase repeat AYR67_00590 PF01494 FAD binding domain AYR67_00600 PF00860 Permease family AYR67_00605 PF00576 HIUase/Transthyretin family AYR67_00635 PF02683 Cytochrome C biogenesis protein transmembrane region AYR67_00635 PF11412 Disulphide bond corrector protein DsbC AYR67_00640 PF07694 5TMR of 5TMR-LYT AYR67_00640 PF00990 Diguanylate cyclase, GGDEF domain AYR67_00645 PF07859 alpha/beta hydrolase fold AYR67_00655 PF03960 ArsC family AYR67_00660 PF03372 Endonuclease/Exonuclease/phosphatase family AYR67_00665 PF00156 Phosphoribosyl transferase domain AYR67_00670 PF07715 TonB-dependent Receptor Plug Domain AYR67_00670 PF00593 TonB dependent receptor AYR67_00680 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYR67_00680 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYR67_00685 PF04101 Glycosyltransferase family 28 C-terminal domain AYR67_00685 PF03033 Glycosyltransferase family 28 N-terminal domain AYR67_00690 PF02875 Mur ligase family, glutamate ligase domain AYR67_00690 PF08245 Mur ligase middle domain AYR67_00690 PF01225 Mur ligase family, catalytic domain AYR67_00695 PF07478 D-ala D-ala ligase C-terminus AYR67_00695 PF01820 D-ala D-ala ligase N-terminus AYR67_00700 PF03799 Cell division protein FtsQ AYR67_00700 PF08478 POTRA domain, FtsQ-type AYR67_00705 PF02491 SHS2 domain inserted in FTSA AYR67_00710 PF12327 FtsZ family, C-terminal domain AYR67_00710 PF00091 Tubulin/FtsZ family, GTPase domain AYR67_00715 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AYR67_00725 PF01551 Peptidase family M23 AYR67_00730 PF00456 Transketolase, thiamine diphosphate binding domain AYR67_00730 PF17831 Pyruvate dehydrogenase E1 component middle domain AYR67_00735 PF02817 e3 binding domain AYR67_00735 PF00364 Biotin-requiring enzyme AYR67_00735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR67_00745 PF01169 Uncharacterized protein family UPF0016 AYR67_00750 PF07715 TonB-dependent Receptor Plug Domain AYR67_00750 PF00593 TonB dependent receptor AYR67_00755 PF01613 Flavin reductase like domain AYR67_00755 PF00258 Flavodoxin AYR67_00760 PF03692 Putative zinc- or iron-chelating domain AYR67_00765 PF00571 CBS domain AYR67_00765 PF00478 IMP dehydrogenase / GMP reductase domain AYR67_00770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR67_00770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR67_00770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR67_00770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR67_00775 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AYR67_00775 PF01243 Pyridoxamine 5'-phosphate oxidase AYR67_00780 PF17768 RecJ OB domain AYR67_00780 PF01368 DHH family AYR67_00780 PF02272 DHHA1 domain AYR67_00790 PF00472 RF-1 domain AYR67_00790 PF03462 PCRF domain AYR67_00800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR67_00805 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYR67_00810 PF04452 RNA methyltransferase AYR67_00815 PF00924 Mechanosensitive ion channel AYR67_00825 PF16177 Acetyl-coenzyme A synthetase N-terminus AYR67_00825 PF00501 AMP-binding enzyme AYR67_00825 PF13193 AMP-binding enzyme C-terminal domain AYR67_00830 PF00857 Isochorismatase family AYR67_00835 PF01037 Lrp/AsnC ligand binding domain AYR67_00840 PF00296 Luciferase-like monooxygenase AYR67_00845 PF03358 NADPH-dependent FMN reductase AYR67_00850 PF00072 Response regulator receiver domain AYR67_00850 PF00196 Bacterial regulatory proteins, luxR family AYR67_00860 PF01627 Hpt domain AYR67_00860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_00860 PF00672 HAMP domain AYR67_00860 PF00072 Response regulator receiver domain AYR67_00860 PF00512 His Kinase A (phospho-acceptor) domain AYR67_00865 PF04341 Protein of unknown function, DUF485 AYR67_00870 PF00474 Sodium:solute symporter family AYR67_00880 PF02028 BCCT, betaine/carnitine/choline family transporter AYR67_00890 PF00990 Diguanylate cyclase, GGDEF domain AYR67_00890 PF17158 Membrane-associated sensor, integral membrane domain AYR67_00895 PF17760 UvrA interaction domain AYR67_00895 PF17755 UvrA DNA-binding domain AYR67_00900 PF16925 Tetracyclin repressor-like, C-terminal domain AYR67_00900 PF00440 Bacterial regulatory proteins, tetR family AYR67_00905 PF14765 Polyketide synthase dehydratase AYR67_00905 PF00550 Phosphopantetheine attachment site AYR67_00905 PF08659 KR domain AYR67_00905 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR67_00905 PF00698 Acyl transferase domain AYR67_00905 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR67_00905 PF16197 Ketoacyl-synthetase C-terminal extension AYR67_00905 PF00107 Zinc-binding dehydrogenase AYR67_00905 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_00915 PF06942 GlpM protein AYR67_00920 PF03070 TENA/THI-4/PQQC family AYR67_00920 PF08543 Phosphomethylpyrimidine kinase AYR67_00920 PF02581 Thiamine monophosphate synthase AYR67_00930 PF07690 Major Facilitator Superfamily AYR67_00935 PF00436 Single-strand binding protein family AYR67_00945 PF03591 AzlC protein AYR67_00955 PF00324 Amino acid permease AYR67_00960 PF00392 Bacterial regulatory proteins, gntR family AYR67_00960 PF00155 Aminotransferase class I and II AYR67_00965 PF00202 Aminotransferase class-III AYR67_00970 PF00171 Aldehyde dehydrogenase family AYR67_00975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_00980 PF00857 Isochorismatase family AYR67_00985 PF05726 Pirin C-terminal cupin domain AYR67_00985 PF02678 Pirin AYR67_01010 PF07690 Major Facilitator Superfamily AYR67_01015 PF03466 LysR substrate binding domain AYR67_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_01035 PF00248 Aldo/keto reductase family AYR67_01040 PF02311 AraC-like ligand binding domain AYR67_01040 PF12833 Helix-turn-helix domain AYR67_01065 PF01638 HxlR-like helix-turn-helix AYR67_01070 PF02525 Flavodoxin-like fold AYR67_01090 PF02705 K+ potassium transporter AYR67_01115 PF00230 Major intrinsic protein AYR67_01130 PF00977 Histidine biosynthesis protein AYR67_01135 PF01636 Phosphotransferase enzyme family AYR67_01150 PF03992 Antibiotic biosynthesis monooxygenase AYR67_01165 PF00977 Histidine biosynthesis protein AYR67_01180 PF00117 Glutamine amidotransferase class-I AYR67_01185 PF00475 Imidazoleglycerol-phosphate dehydratase AYR67_01205 PF00583 Acetyltransferase (GNAT) family AYR67_01210 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AYR67_01210 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AYR67_01215 PF00672 HAMP domain AYR67_01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_01215 PF00512 His Kinase A (phospho-acceptor) domain AYR67_01220 PF00072 Response regulator receiver domain AYR67_01220 PF00486 Transcriptional regulatory protein, C terminal AYR67_01225 PF09371 Tex-like protein N-terminal domain AYR67_01225 PF17674 HHH domain AYR67_01225 PF16921 Tex protein YqgF-like domain AYR67_01225 PF00575 S1 RNA binding domain AYR67_01230 PF01740 STAS domain AYR67_01230 PF00916 Sulfate permease family AYR67_01235 PF00106 short chain dehydrogenase AYR67_01240 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR67_01245 PF12848 ABC transporter AYR67_01245 PF00005 ABC transporter AYR67_01270 PF04191 Phospholipid methyltransferase AYR67_01285 PF00529 HlyD membrane-fusion protein of T1SS AYR67_01285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR67_01290 PF00873 AcrB/AcrD/AcrF family AYR67_01295 PF01545 Cation efflux family AYR67_01325 PF00324 Amino acid permease AYR67_01340 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR67_01355 PF01795 MraW methylase family AYR67_01365 PF00905 Penicillin binding protein transpeptidase domain AYR67_01365 PF03717 Penicillin-binding Protein dimerisation domain AYR67_01370 PF01225 Mur ligase family, catalytic domain AYR67_01370 PF08245 Mur ligase middle domain AYR67_01370 PF02875 Mur ligase family, glutamate ligase domain AYR67_01375 PF08245 Mur ligase middle domain AYR67_01375 PF01225 Mur ligase family, catalytic domain AYR67_01375 PF02875 Mur ligase family, glutamate ligase domain AYR67_01380 PF00953 Glycosyl transferase family 4 AYR67_01390 PF13847 Methyltransferase domain AYR67_01395 PF17092 Penicillin-binding protein OB-like domain AYR67_01395 PF00912 Transglycosylase AYR67_01395 PF00905 Penicillin binding protein transpeptidase domain AYR67_01420 PF11741 AMIN domain AYR67_01420 PF00263 Bacterial type II and III secretion system protein AYR67_01420 PF03958 Bacterial type II/III secretion system short domain AYR67_01420 PF07660 Secretin and TonB N terminus short domain AYR67_01425 PF01202 Shikimate kinase AYR67_01430 PF01761 3-dehydroquinate synthase AYR67_01440 PF01493 GXGXG motif AYR67_01440 PF00310 Glutamine amidotransferases class-II AYR67_01440 PF01645 Conserved region in glutamate synthase AYR67_01440 PF04898 Glutamate synthase central domain AYR67_01445 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AYR67_01445 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_01455 PF04011 LemA family AYR67_01460 PF04536 TPM domain AYR67_01480 PF11846 Virulence factor membrane-bound polymerase, C-terminal AYR67_01480 PF15864 Protein glycosylation ligase AYR67_01480 PF04932 O-Antigen ligase AYR67_01485 PF00210 Ferritin-like domain AYR67_01490 PF04324 BFD-like [2Fe-2S] binding domain AYR67_01495 PF01042 Endoribonuclease L-PSP AYR67_01500 PF02824 TGS domain AYR67_01500 PF04607 Region found in RelA / SpoT proteins AYR67_01500 PF13291 ACT domain AYR67_01505 PF01192 RNA polymerase Rpb6 AYR67_01510 PF00625 Guanylate kinase AYR67_01515 PF02401 LytB protein AYR67_01555 PF00886 Ribosomal protein S16 AYR67_01560 PF05239 PRC-barrel domain AYR67_01560 PF01782 RimM N-terminal domain AYR67_01565 PF01746 tRNA (Guanine-1)-methyltransferase AYR67_01570 PF01245 Ribosomal protein L19 AYR67_01575 PF00561 alpha/beta hydrolase fold AYR67_01580 PF03280 Proteobacterial lipase chaperone protein AYR67_01585 PF16198 tRNA pseudouridylate synthase B C-terminal domain AYR67_01585 PF09157 Pseudouridine synthase II TruB, C-terminal AYR67_01585 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYR67_01590 PF01925 Sulfite exporter TauE/SafE AYR67_01600 PF00892 EamA-like transporter family AYR67_01605 PF00892 EamA-like transporter family AYR67_01610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR67_01610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR67_01615 PF02913 FAD linked oxidases, C-terminal domain AYR67_01615 PF01565 FAD binding domain AYR67_01625 PF03992 Antibiotic biosynthesis monooxygenase AYR67_01630 PF02525 Flavodoxin-like fold AYR67_01640 PF07690 Major Facilitator Superfamily AYR67_01645 PF12805 FUSC-like inner membrane protein yccS AYR67_01650 PF00080 Copper/zinc superoxide dismutase (SODC) AYR67_01655 PF01594 AI-2E family transporter AYR67_01660 PF13614 AAA domain AYR67_01690 PF00324 Amino acid permease AYR67_01695 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYR67_01695 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYR67_01700 PF00202 Aminotransferase class-III AYR67_01705 PF04958 Arginine N-succinyltransferase beta subunit AYR67_01710 PF00171 Aldehyde dehydrogenase family AYR67_01715 PF04996 Succinylarginine dihydrolase AYR67_01720 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AYR67_01750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_01750 PF03466 LysR substrate binding domain AYR67_01755 PF00892 EamA-like transporter family AYR67_01765 PF02092 Glycyl-tRNA synthetase beta subunit AYR67_01765 PF05746 DALR anticodon binding domain AYR67_01770 PF02091 Glycyl-tRNA synthetase alpha subunit AYR67_01795 PF00571 CBS domain AYR67_01800 PF04024 PspC domain AYR67_01810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_01810 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_01810 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYR67_01810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_01820 PF01488 Shikimate / quinate 5-dehydrogenase AYR67_01820 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYR67_01820 PF08501 Shikimate dehydrogenase substrate binding domain AYR67_01825 PF01218 Coproporphyrinogen III oxidase AYR67_01830 PF00925 GTP cyclohydrolase II AYR67_01835 PF02780 Transketolase, C-terminal domain AYR67_01835 PF02779 Transketolase, pyrimidine binding domain AYR67_01835 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AYR67_01840 PF00459 Inositol monophosphatase family AYR67_01845 PF00271 Helicase conserved C-terminal domain AYR67_01845 PF00270 DEAD/DEAH box helicase AYR67_01845 PF03880 DbpA RNA binding domain AYR67_01845 PF12343 Cold shock protein DEAD box A AYR67_01855 PF00005 ABC transporter AYR67_01860 PF02405 Permease MlaE AYR67_01870 PF05494 MlaC protein AYR67_01880 PF01544 CorA-like Mg2+ transporter protein AYR67_01885 PF03641 Possible lysine decarboxylase AYR67_01890 PF00293 NUDIX domain AYR67_01895 PF00156 Phosphoribosyl transferase domain AYR67_01900 PF17191 RecG wedge domain AYR67_01900 PF00270 DEAD/DEAH box helicase AYR67_01900 PF00271 Helicase conserved C-terminal domain AYR67_01915 PF01553 Acyltransferase AYR67_01925 PF00375 Sodium:dicarboxylate symporter family AYR67_01935 PF01926 50S ribosome-binding GTPase AYR67_01940 PF02082 Transcriptional regulator AYR67_01945 PF00175 Oxidoreductase NAD-binding domain AYR67_01945 PF00042 Globin AYR67_01945 PF00970 Oxidoreductase FAD-binding domain AYR67_01950 PF05872 Bacterial protein of unknown function (DUF853) AYR67_01955 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR67_01960 PF00117 Glutamine amidotransferase class-I AYR67_01965 PF00338 Ribosomal protein S10p/S20e AYR67_01970 PF00297 Ribosomal protein L3 AYR67_01975 PF00573 Ribosomal protein L4/L1 family AYR67_01980 PF00276 Ribosomal protein L23 AYR67_01985 PF03947 Ribosomal Proteins L2, C-terminal domain AYR67_01985 PF00181 Ribosomal Proteins L2, RNA binding domain AYR67_01990 PF00203 Ribosomal protein S19 AYR67_01995 PF00237 Ribosomal protein L22p/L17e AYR67_02000 PF00189 Ribosomal protein S3, C-terminal domain AYR67_02000 PF07650 KH domain AYR67_02005 PF00252 Ribosomal protein L16p/L10e AYR67_02010 PF00831 Ribosomal L29 protein AYR67_02015 PF00366 Ribosomal protein S17 AYR67_02020 PF00238 Ribosomal protein L14p/L23e AYR67_02025 PF00467 KOW motif AYR67_02025 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AYR67_02030 PF00281 Ribosomal protein L5 AYR67_02030 PF00673 ribosomal L5P family C-terminus AYR67_02035 PF00253 Ribosomal protein S14p/S29e AYR67_02040 PF00410 Ribosomal protein S8 AYR67_02045 PF00347 Ribosomal protein L6 AYR67_02050 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AYR67_02055 PF00333 Ribosomal protein S5, N-terminal domain AYR67_02055 PF03719 Ribosomal protein S5, C-terminal domain AYR67_02060 PF00327 Ribosomal protein L30p/L7e AYR67_02065 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AYR67_02070 PF00344 SecY translocase AYR67_02075 PF00444 Ribosomal protein L36 AYR67_02080 PF00416 Ribosomal protein S13/S18 AYR67_02085 PF00411 Ribosomal protein S11 AYR67_02090 PF01479 S4 domain AYR67_02090 PF00163 Ribosomal protein S4/S9 N-terminal domain AYR67_02095 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYR67_02095 PF01000 RNA polymerase Rpb3/RpoA insert domain AYR67_02095 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYR67_02100 PF01196 Ribosomal protein L17 AYR67_02105 PF00743 Flavin-binding monooxygenase-like AYR67_02110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_02110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_02110 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_02115 PF03937 Flavinator of succinate dehydrogenase AYR67_02145 PF09526 Probable metal-binding protein (DUF2387) AYR67_02150 PF01432 Peptidase family M3 AYR67_02155 PF00575 S1 RNA binding domain AYR67_02155 PF00773 RNB domain AYR67_02155 PF08206 Ribonuclease B OB domain AYR67_02155 PF08461 Ribonuclease R winged-helix domain AYR67_02155 PF17876 Cold shock domain AYR67_02200 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYR67_02205 PF12833 Helix-turn-helix domain AYR67_02210 PF00892 EamA-like transporter family AYR67_02215 PF03631 Virulence factor BrkB AYR67_02220 PF03358 NADPH-dependent FMN reductase AYR67_02245 PF02130 Uncharacterized protein family UPF0054 AYR67_02250 PF02562 PhoH-like protein AYR67_02255 PF00919 Uncharacterized protein family UPF0004 AYR67_02255 PF01938 TRAM domain AYR67_02255 PF04055 Radical SAM superfamily AYR67_02260 PF10145 Phage-related minor tail protein AYR67_02260 PF01464 Transglycosylase SLT domain AYR67_02260 PF01551 Peptidase family M23 AYR67_02270 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AYR67_02270 PF00056 lactate/malate dehydrogenase, NAD binding domain AYR67_02290 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AYR67_02295 PF01066 CDP-alcohol phosphatidyltransferase AYR67_02340 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_02340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_02340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_02345 PF17932 Tetracyclin repressor-like, C-terminal domain AYR67_02345 PF00440 Bacterial regulatory proteins, tetR family AYR67_02360 PF01039 Carboxyl transferase domain AYR67_02365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_02365 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_02365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_02375 PF00364 Biotin-requiring enzyme AYR67_02375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR67_02375 PF02785 Biotin carboxylase C-terminal domain AYR67_02375 PF00289 Biotin carboxylase, N-terminal domain AYR67_02385 PF04386 Stringent starvation protein B AYR67_02390 PF13417 Glutathione S-transferase, N-terminal domain AYR67_02390 PF00043 Glutathione S-transferase, C-terminal domain AYR67_02395 PF00380 Ribosomal protein S9/S16 AYR67_02400 PF00572 Ribosomal protein L13 AYR67_02405 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYR67_02410 PF00398 Ribosomal RNA adenine dimethylase AYR67_02415 PF00149 Calcineurin-like phosphoesterase AYR67_02435 PF01926 50S ribosome-binding GTPase AYR67_02435 PF13167 GTP-binding GTPase N-terminal AYR67_02435 PF16360 GTP-binding GTPase Middle Region AYR67_02445 PF13091 PLD-like domain AYR67_02450 PF10518 TAT (twin-arginine translocation) pathway signal sequence AYR67_02450 PF00149 Calcineurin-like phosphoesterase AYR67_02455 PF00691 OmpA family AYR67_02455 PF01389 OmpA-like transmembrane domain AYR67_02460 PF17152 Periplasmic sensor domain AYR67_02460 PF00990 Diguanylate cyclase, GGDEF domain AYR67_02495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR67_02495 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_02505 PF00753 Metallo-beta-lactamase superfamily AYR67_02505 PF04273 Putative phosphatase (DUF442) AYR67_02510 PF00561 alpha/beta hydrolase fold AYR67_02515 PF00085 Thioredoxin AYR67_02520 PF03061 Thioesterase superfamily AYR67_02530 PF04461 Protein of unknown function (DUF520) AYR67_02540 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYR67_02540 PF01266 FAD dependent oxidoreductase AYR67_02550 PF03795 YCII-related domain AYR67_02555 PF04279 Intracellular septation protein A AYR67_02560 PF02811 PHP domain AYR67_02565 PF01062 Bestrophin, RFP-TM, chloride channel AYR67_02570 PF04002 RadC-like JAB domain AYR67_02575 PF04127 DNA / pantothenate metabolism flavoprotein AYR67_02575 PF02441 Flavoprotein AYR67_02580 PF07549 SecD/SecF GG Motif AYR67_02580 PF02355 Protein export membrane protein AYR67_02585 PF07549 SecD/SecF GG Motif AYR67_02585 PF13721 SecD export protein N-terminal TM region AYR67_02585 PF02355 Protein export membrane protein AYR67_02590 PF02699 Preprotein translocase subunit AYR67_02595 PF01702 Queuine tRNA-ribosyltransferase AYR67_02610 PF02547 Queuosine biosynthesis protein AYR67_02620 PF00512 His Kinase A (phospho-acceptor) domain AYR67_02620 PF07689 KaiB domain AYR67_02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_02625 PF03710 Glutamate-ammonia ligase adenylyltransferase AYR67_02625 PF08335 GlnD PII-uridylyltransferase AYR67_02630 PF01063 Amino-transferase class IV AYR67_02645 PF01522 Polysaccharide deacetylase AYR67_02650 PF00535 Glycosyl transferase family 2 AYR67_02655 PF00534 Glycosyl transferases group 1 AYR67_02655 PF13439 Glycosyltransferase Family 4 AYR67_02680 PF17101 Stealth protein CR1, conserved region 1 AYR67_02680 PF11380 Stealth protein CR2, conserved region 2 AYR67_02680 PF17102 Stealth protein CR3, conserved region 3 AYR67_02685 PF01336 OB-fold nucleic acid binding domain AYR67_02685 PF00152 tRNA synthetases class II (D, K and N) AYR67_02685 PF02938 GAD domain AYR67_02695 PF07715 TonB-dependent Receptor Plug Domain AYR67_02695 PF00593 TonB dependent receptor AYR67_02715 PF06146 Phosphate-starvation-inducible E AYR67_02720 PF02798 Glutathione S-transferase, N-terminal domain AYR67_02720 PF00043 Glutathione S-transferase, C-terminal domain AYR67_02725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_02725 PF03466 LysR substrate binding domain AYR67_02730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_02730 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYR67_02730 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_02730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_02735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_02735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_02735 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYR67_02735 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_02745 PF00512 His Kinase A (phospho-acceptor) domain AYR67_02745 PF00672 HAMP domain AYR67_02750 PF00486 Transcriptional regulatory protein, C terminal AYR67_02750 PF00072 Response regulator receiver domain AYR67_02755 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AYR67_02775 PF01923 Cobalamin adenosyltransferase AYR67_02780 PF00593 TonB dependent receptor AYR67_02780 PF07715 TonB-dependent Receptor Plug Domain AYR67_02785 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AYR67_02790 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_02815 PF00290 Tryptophan synthase alpha chain AYR67_02820 PF01039 Carboxyl transferase domain AYR67_02825 PF02875 Mur ligase family, glutamate ligase domain AYR67_02825 PF08245 Mur ligase middle domain AYR67_02840 PF00753 Metallo-beta-lactamase superfamily AYR67_02845 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYR67_02845 PF00578 AhpC/TSA family AYR67_02850 PF02810 SEC-C motif AYR67_02850 PF07517 SecA DEAD-like domain AYR67_02850 PF01043 SecA preprotein cross-linking domain AYR67_02850 PF07516 SecA Wing and Scaffold domain AYR67_02860 PF07690 Major Facilitator Superfamily AYR67_02860 PF00083 Sugar (and other) transporter AYR67_02865 PF03006 Haemolysin-III related AYR67_02890 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR67_02890 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR67_02890 PF00378 Enoyl-CoA hydratase/isomerase AYR67_02895 PF00108 Thiolase, N-terminal domain AYR67_02895 PF02803 Thiolase, C-terminal domain AYR67_02900 PF02311 AraC-like ligand binding domain AYR67_02900 PF12833 Helix-turn-helix domain AYR67_02905 PF02515 CoA-transferase family III AYR67_02910 PF04966 Carbohydrate-selective porin, OprB family AYR67_02915 PF01011 PQQ enzyme repeat AYR67_02920 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYR67_02920 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYR67_02930 PF00893 Small Multidrug Resistance protein AYR67_02940 PF00108 Thiolase, N-terminal domain AYR67_02940 PF02803 Thiolase, C-terminal domain AYR67_02950 PF00691 OmpA family AYR67_02950 PF13505 Outer membrane protein beta-barrel domain AYR67_02960 PF01139 tRNA-splicing ligase RtcB AYR67_02965 PF00324 Amino acid permease AYR67_02970 PF05175 Methyltransferase small domain AYR67_02970 PF08468 Methyltransferase small domain N-terminal AYR67_02975 PF00860 Permease family AYR67_02985 PF01741 Large-conductance mechanosensitive channel, MscL AYR67_03000 PF06827 Zinc finger found in FPG and IleRS AYR67_03000 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYR67_03000 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYR67_03005 PF02245 Methylpurine-DNA glycosylase (MPG) AYR67_03030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR67_03035 PF03547 Membrane transport protein AYR67_03045 PF10411 Disulfide bond isomerase protein N-terminus AYR67_03045 PF13098 Thioredoxin-like domain AYR67_03050 PF01571 Aminomethyltransferase folate-binding domain AYR67_03060 PF04343 Protein of unknown function, DUF488 AYR67_03065 PF08274 PhnA Zinc-Ribbon AYR67_03065 PF03831 PhnA domain AYR67_03070 PF07411 Domain of unknown function (DUF1508) AYR67_03075 PF04073 Aminoacyl-tRNA editing domain AYR67_03075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR67_03075 PF03129 Anticodon binding domain AYR67_03080 PF00873 AcrB/AcrD/AcrF family AYR67_03095 PF00072 Response regulator receiver domain AYR67_03100 PF00072 Response regulator receiver domain AYR67_03105 PF01584 CheW-like domain AYR67_03110 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AYR67_03110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYR67_03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_03115 PF01584 CheW-like domain AYR67_03115 PF01627 Hpt domain AYR67_03115 PF00072 Response regulator receiver domain AYR67_03125 PF07687 Peptidase dimerisation domain AYR67_03125 PF01546 Peptidase family M20/M25/M40 AYR67_03130 PF08085 Entericidin EcnA/B family AYR67_03140 PF04304 Protein of unknown function (DUF454) AYR67_03145 PF17969 L,D-transpeptidase C-terminal domain AYR67_03145 PF03734 L,D-transpeptidase catalytic domain AYR67_03185 PF00667 FAD binding domain AYR67_03185 PF00258 Flavodoxin AYR67_03185 PF00175 Oxidoreductase NAD-binding domain AYR67_03195 PF12805 FUSC-like inner membrane protein yccS AYR67_03200 PF07690 Major Facilitator Superfamily AYR67_03205 PF00881 Nitroreductase family AYR67_03215 PF01235 Sodium:alanine symporter family AYR67_03220 PF01734 Patatin-like phospholipase AYR67_03225 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_03225 PF13291 ACT domain AYR67_03230 PF05992 SbmA/BacA-like family AYR67_03270 PF02637 GatB domain AYR67_03270 PF02934 GatB/GatE catalytic domain AYR67_03275 PF01425 Amidase AYR67_03280 PF02686 Glu-tRNAGln amidotransferase C subunit AYR67_03290 PF04085 rod shape-determining protein MreC AYR67_03295 PF04093 rod shape-determining protein MreD AYR67_03300 PF02545 Maf-like protein AYR67_03305 PF00575 S1 RNA binding domain AYR67_03305 PF10150 Ribonuclease E/G family AYR67_03315 PF06974 Protein of unknown function (DUF1298) AYR67_03315 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AYR67_03320 PF01507 Phosphoadenosine phosphosulfate reductase family AYR67_03335 PF02525 Flavodoxin-like fold AYR67_03355 PF02673 Bacitracin resistance protein BacA AYR67_03360 PF12833 Helix-turn-helix domain AYR67_03360 PF06719 AraC-type transcriptional regulator N-terminus AYR67_03365 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR67_03365 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR67_03365 PF09277 Erythronolide synthase, docking AYR67_03365 PF08659 KR domain AYR67_03365 PF14765 Polyketide synthase dehydratase AYR67_03365 PF08990 Erythronolide synthase docking AYR67_03365 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_03365 PF00698 Acyl transferase domain AYR67_03365 PF16197 Ketoacyl-synthetase C-terminal extension AYR67_03365 PF00550 Phosphopantetheine attachment site AYR67_03370 PF01965 DJ-1/PfpI family AYR67_03380 PF00324 Amino acid permease AYR67_03385 PF04303 PrpF protein AYR67_03390 PF00348 Polyprenyl synthetase AYR67_03395 PF04237 YjbR AYR67_03400 PF01145 SPFH domain / Band 7 family AYR67_03410 PF01734 Patatin-like phospholipase AYR67_03430 PF08019 Phosphoethanolamine transferase EptA/EptB AYR67_03430 PF00884 Sulfatase AYR67_03435 PF00486 Transcriptional regulatory protein, C terminal AYR67_03435 PF00072 Response regulator receiver domain AYR67_03440 PF00512 His Kinase A (phospho-acceptor) domain AYR67_03440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_03440 PF08521 Two-component sensor kinase N-terminal AYR67_03450 PF00909 Ammonium Transporter Family AYR67_03455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_03455 PF03466 LysR substrate binding domain AYR67_03475 PF08264 Anticodon-binding domain of tRNA AYR67_03475 PF00133 tRNA synthetases class I (I, L, M and V) AYR67_03475 PF10458 Valyl tRNA synthetase tRNA binding arm AYR67_03495 PF01906 Putative heavy-metal-binding AYR67_03500 PF01906 Putative heavy-metal-binding AYR67_03505 PF02321 Outer membrane efflux protein AYR67_03510 PF00873 AcrB/AcrD/AcrF family AYR67_03515 PF00529 HlyD membrane-fusion protein of T1SS AYR67_03515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR67_03520 PF01569 PAP2 superfamily AYR67_03530 PF00348 Polyprenyl synthetase AYR67_03540 PF00829 Ribosomal prokaryotic L21 protein AYR67_03545 PF01016 Ribosomal L27 protein AYR67_03550 PF03548 Outer membrane lipoprotein carrier protein LolA AYR67_03560 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR67_03560 PF02403 Seryl-tRNA synthetase N-terminal domain AYR67_03565 PF14824 Sirohaem biosynthesis protein central AYR67_03565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYR67_03565 PF10414 Sirohaem synthase dimerisation region AYR67_03570 PF00588 SpoU rRNA Methylase family AYR67_03575 PF01638 HxlR-like helix-turn-helix AYR67_03580 PF03358 NADPH-dependent FMN reductase AYR67_03585 PF13520 Amino acid permease AYR67_03590 PF00465 Iron-containing alcohol dehydrogenase AYR67_03600 PF03099 Biotin/lipoate A/B protein ligase family AYR67_03605 PF04359 Protein of unknown function (DUF493) AYR67_03610 PF00140 Sigma-70 factor, region 1.2 AYR67_03610 PF04539 Sigma-70 region 3 AYR67_03610 PF04542 Sigma-70 region 2 AYR67_03610 PF03979 Sigma-70 factor, region 1.1 AYR67_03610 PF04546 Sigma-70, non-essential region AYR67_03610 PF04545 Sigma-70, region 4 AYR67_03640 PF00285 Citrate synthase, C-terminal domain AYR67_03645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYR67_03650 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYR67_03655 PF02910 Fumarate reductase flavoprotein C-term AYR67_03655 PF00890 FAD binding domain AYR67_03660 PF13085 2Fe-2S iron-sulfur cluster binding domain AYR67_03665 PF02779 Transketolase, pyrimidine binding domain AYR67_03665 PF00676 Dehydrogenase E1 component AYR67_03665 PF16870 2-oxoglutarate dehydrogenase C-terminal AYR67_03665 PF16078 2-oxoglutarate dehydrogenase N-terminus AYR67_03670 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR67_03670 PF00364 Biotin-requiring enzyme AYR67_03670 PF02817 e3 binding domain AYR67_03675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_03675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR67_03680 PF08442 ATP-grasp domain AYR67_03680 PF00549 CoA-ligase AYR67_03685 PF00549 CoA-ligase AYR67_03685 PF02629 CoA binding domain AYR67_03690 PF00579 tRNA synthetases class I (W and Y) AYR67_03695 PF05661 Protein of unknown function (DUF808) AYR67_03700 PF04228 Putative neutral zinc metallopeptidase AYR67_03705 PF00999 Sodium/hydrogen exchanger family AYR67_03720 PF09587 Bacterial capsule synthesis protein PGA_cap AYR67_03730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR67_03735 PF00582 Universal stress protein family AYR67_03740 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_03745 PF01272 Transcription elongation factor, GreA/GreB, C-term AYR67_03745 PF03449 Transcription elongation factor, N-terminal AYR67_03750 PF02142 MGS-like domain AYR67_03750 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYR67_03750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR67_03755 PF00117 Glutamine amidotransferase class-I AYR67_03755 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AYR67_03770 PF01985 CRS1 / YhbY (CRM) domain AYR67_03775 PF01728 FtsJ-like methyltransferase AYR67_03780 PF17862 AAA+ lid domain AYR67_03780 PF06480 FtsH Extracellular AYR67_03780 PF01434 Peptidase family M41 AYR67_03780 PF00004 ATPase family associated with various cellular activities (AAA) AYR67_03785 PF00809 Pterin binding enzyme AYR67_03805 PF09423 PhoD-like phosphatase AYR67_03805 PF16655 PhoD-like phosphatase, N-terminal domain AYR67_03820 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYR67_03820 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYR67_03835 PF00083 Sugar (and other) transporter AYR67_03840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYR67_03840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYR67_03845 PF01266 FAD dependent oxidoreductase AYR67_03845 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AYR67_03850 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AYR67_03850 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AYR67_03855 PF00781 Diacylglycerol kinase catalytic domain AYR67_03860 PF00149 Calcineurin-like phosphoesterase AYR67_03870 PF00166 Chaperonin 10 Kd subunit AYR67_03875 PF00118 TCP-1/cpn60 chaperonin family AYR67_03880 PF01219 Prokaryotic diacylglycerol kinase AYR67_03890 PF03009 Glycerophosphoryl diester phosphodiesterase family AYR67_03895 PF00873 AcrB/AcrD/AcrF family AYR67_03905 PF01435 Peptidase family M48 AYR67_03910 PF01464 Transglycosylase SLT domain AYR67_03915 PF01171 PP-loop family AYR67_03925 PF01464 Transglycosylase SLT domain AYR67_03925 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR67_03930 PF03449 Transcription elongation factor, N-terminal AYR67_03930 PF01272 Transcription elongation factor, GreA/GreB, C-term AYR67_03945 PF00975 Thioesterase domain AYR67_03945 PF00550 Phosphopantetheine attachment site AYR67_03945 PF00501 AMP-binding enzyme AYR67_03945 PF13193 AMP-binding enzyme C-terminal domain AYR67_03945 PF00668 Condensation domain AYR67_03970 PF00881 Nitroreductase family AYR67_03985 PF02595 Glycerate kinase family AYR67_03990 PF00384 Molybdopterin oxidoreductase AYR67_03995 PF02634 FdhD/NarQ family AYR67_04000 PF06803 Protein of unknown function (DUF1232) AYR67_04005 PF11890 Domain of unknown function (DUF3410) AYR67_04005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR67_04005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR67_04010 PF00152 tRNA synthetases class II (D, K and N) AYR67_04020 PF18073 Rubredoxin metal binding domain AYR67_04025 PF00324 Amino acid permease AYR67_04035 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYR67_04035 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYR67_04040 PF01678 Diaminopimelate epimerase AYR67_04045 PF01810 LysE type translocator AYR67_04050 PF02899 Phage integrase, N-terminal SAM-like domain AYR67_04050 PF00589 Phage integrase family AYR67_04055 PF01012 Electron transfer flavoprotein domain AYR67_04060 PF01012 Electron transfer flavoprotein domain AYR67_04060 PF00766 Electron transfer flavoprotein FAD-binding domain AYR67_04065 PF00521 DNA gyrase/topoisomerase IV, subunit A AYR67_04065 PF03989 DNA gyrase C-terminal domain, beta-propeller AYR67_04080 PF00535 Glycosyl transferase family 2 AYR67_04100 PF13533 Biotin-lipoyl like AYR67_04110 PF00266 Aminotransferase class-V AYR67_04120 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AYR67_04130 PF12704 MacB-like periplasmic core domain AYR67_04130 PF02687 FtsX-like permease family AYR67_04135 PF00005 ABC transporter AYR67_04140 PF00753 Metallo-beta-lactamase superfamily AYR67_04140 PF13567 Domain of unknown function (DUF4131) AYR67_04140 PF03772 Competence protein AYR67_04150 PF06965 Na+/H+ antiporter 1 AYR67_04150 PF01343 Peptidase family S49 AYR67_04155 PF12697 Alpha/beta hydrolase family AYR67_04160 PF00551 Formyl transferase AYR67_04165 PF02769 AIR synthase related protein, C-terminal domain AYR67_04165 PF00586 AIR synthase related protein, N-terminal domain AYR67_04170 PF01594 AI-2E family transporter AYR67_04175 PF00308 Bacterial dnaA protein AYR67_04175 PF08299 Bacterial dnaA protein helix-turn-helix AYR67_04175 PF11638 DnaA N-terminal domain AYR67_04205 PF00588 SpoU rRNA Methylase family AYR67_04205 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYR67_04210 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AYR67_04220 PF00691 OmpA family AYR67_04225 PF07676 WD40-like Beta Propeller Repeat AYR67_04225 PF04052 TolB amino-terminal domain AYR67_04235 PF02472 Biopolymer transport protein ExbD/TolR AYR67_04240 PF01618 MotA/TolQ/ExbB proton channel family AYR67_04245 PF03061 Thioesterase superfamily AYR67_04250 PF07687 Peptidase dimerisation domain AYR67_04250 PF01546 Peptidase family M20/M25/M40 AYR67_04255 PF05491 RuvB C-terminal winged helix domain AYR67_04255 PF17864 RuvB AAA lid domain AYR67_04255 PF05496 Holliday junction DNA helicase RuvB P-loop domain AYR67_04260 PF01330 RuvA N terminal domain AYR67_04260 PF07499 RuvA, C-terminal domain AYR67_04265 PF01966 HD domain AYR67_04270 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AYR67_04270 PF02769 AIR synthase related protein, C-terminal domain AYR67_04270 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AYR67_04275 PF07690 Major Facilitator Superfamily AYR67_04285 PF01784 NIF3 (NGG1p interacting factor 3) AYR67_04290 PF00378 Enoyl-CoA hydratase/isomerase AYR67_04295 PF01467 Cytidylyltransferase-like AYR67_04295 PF00293 NUDIX domain AYR67_04305 PF00578 AhpC/TSA family AYR67_04320 PF06508 Queuosine biosynthesis protein QueC AYR67_04330 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AYR67_04330 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_04330 PF14602 Hexapeptide repeat of succinyl-transferase AYR67_04340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_04340 PF03466 LysR substrate binding domain AYR67_04345 PF00005 ABC transporter AYR67_04345 PF12857 TOBE-like domain AYR67_04350 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_04355 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_04370 PF01063 Amino-transferase class IV AYR67_04375 PF02618 YceG-like family AYR67_04380 PF02223 Thymidylate kinase AYR67_04390 PF02910 Fumarate reductase flavoprotein C-term AYR67_04390 PF00890 FAD binding domain AYR67_04395 PF13180 PDZ domain AYR67_04405 PF00679 Elongation factor G C-terminus AYR67_04405 PF00009 Elongation factor Tu GTP binding domain AYR67_04405 PF03144 Elongation factor Tu domain 2 AYR67_04405 PF06421 GTP-binding protein LepA C-terminus AYR67_04410 PF10502 Signal peptidase, peptidase S26 AYR67_04420 PF00035 Double-stranded RNA binding motif AYR67_04420 PF14622 Ribonuclease-III-like AYR67_04425 PF01926 50S ribosome-binding GTPase AYR67_04425 PF07650 KH domain AYR67_04435 PF02565 Recombination protein O C terminal AYR67_04435 PF11967 Recombination protein O N terminal AYR67_04440 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AYR67_04445 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AYR67_04450 PF00106 short chain dehydrogenase AYR67_04485 PF17151 Periplasmic sensor domain AYR67_04485 PF00990 Diguanylate cyclase, GGDEF domain AYR67_04495 PF17757 UvrB interaction domain AYR67_04495 PF12344 Ultra-violet resistance protein B AYR67_04495 PF04851 Type III restriction enzyme, res subunit AYR67_04495 PF00271 Helicase conserved C-terminal domain AYR67_04495 PF02151 UvrB/uvrC motif AYR67_04505 PF00892 EamA-like transporter family AYR67_04510 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYR67_04510 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYR67_04525 PF01018 GTP1/OBG AYR67_04525 PF01926 50S ribosome-binding GTPase AYR67_04530 PF01472 PUA domain AYR67_04530 PF00696 Amino acid kinase family AYR67_04540 PF07759 Protein of unknown function (DUF1615) AYR67_04545 PF01207 Dihydrouridine synthase (Dus) AYR67_04550 PF03060 Nitronate monooxygenase AYR67_04565 PF02350 UDP-N-acetylglucosamine 2-epimerase AYR67_04595 PF03441 FAD binding domain of DNA photolyase AYR67_04595 PF00875 DNA photolyase AYR67_04600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR67_04605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_04610 PF00768 D-alanyl-D-alanine carboxypeptidase AYR67_04610 PF07943 Penicillin-binding protein 5, C-terminal domain AYR67_04620 PF03971 Monomeric isocitrate dehydrogenase AYR67_04625 PF00849 RNA pseudouridylate synthase AYR67_04630 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR67_04645 PF06779 Uncharacterised MFS-type transporter YbfB AYR67_04650 PF03466 LysR substrate binding domain AYR67_04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_04660 PF02567 Phenazine biosynthesis-like protein AYR67_04665 PF00675 Insulinase (Peptidase family M16) AYR67_04665 PF05193 Peptidase M16 inactive domain AYR67_04690 PF02581 Thiamine monophosphate synthase AYR67_04695 PF00202 Aminotransferase class-III AYR67_04705 PF00849 RNA pseudouridylate synthase AYR67_04710 PF00176 SNF2 family N-terminal domain AYR67_04710 PF12137 RNA polymerase recycling family C-terminal AYR67_04710 PF18339 RapA N-terminal Tudor like domain 1 AYR67_04710 PF18337 RapA N-terminal Tudor like domain AYR67_04710 PF00271 Helicase conserved C-terminal domain AYR67_04720 PF00440 Bacterial regulatory proteins, tetR family AYR67_04725 PF00175 Oxidoreductase NAD-binding domain AYR67_04725 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR67_04725 PF00970 Oxidoreductase FAD-binding domain AYR67_04730 PF00487 Fatty acid desaturase AYR67_04740 PF00440 Bacterial regulatory proteins, tetR family AYR67_04740 PF17754 MftR C-terminal domain AYR67_04750 PF00202 Aminotransferase class-III AYR67_04755 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYR67_04760 PF00171 Aldehyde dehydrogenase family AYR67_04765 PF01037 Lrp/AsnC ligand binding domain AYR67_04770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYR67_04770 PF00205 Thiamine pyrophosphate enzyme, central domain AYR67_04770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYR67_04775 PF00324 Amino acid permease AYR67_04780 PF12849 PBP superfamily domain AYR67_04785 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_04790 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_04795 PF00005 ABC transporter AYR67_04800 PF08496 Peptidase family S49 N-terminal AYR67_04800 PF01343 Peptidase family S49 AYR67_04810 PF00872 Transposase, Mutator family AYR67_04820 PF00206 Lyase AYR67_04820 PF08328 Adenylosuccinate lyase C-terminal AYR67_04825 PF04356 Protein of unknown function (DUF489) AYR67_04835 PF13344 Haloacid dehalogenase-like hydrolase AYR67_04835 PF00293 NUDIX domain AYR67_04840 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_04845 PF00768 D-alanyl-D-alanine carboxypeptidase AYR67_04845 PF07943 Penicillin-binding protein 5, C-terminal domain AYR67_04860 PF01975 Survival protein SurE AYR67_04865 PF01476 LysM domain AYR67_04865 PF01551 Peptidase family M23 AYR67_04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_04870 PF03466 LysR substrate binding domain AYR67_04875 PF05362 Lon protease (S16) C-terminal proteolytic domain AYR67_04875 PF13654 AAA domain AYR67_04880 PF07690 Major Facilitator Superfamily AYR67_04885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYR67_04890 PF13593 SBF-like CPA transporter family (DUF4137) AYR67_04895 PF01197 Ribosomal protein L31 AYR67_04910 PF04055 Radical SAM superfamily AYR67_04915 PF01132 Elongation factor P (EF-P) OB domain AYR67_04915 PF08207 Elongation factor P (EF-P) KOW-like domain AYR67_04915 PF09285 Elongation factor P, C-terminal AYR67_04920 PF02554 Carbon starvation protein CstA AYR67_04920 PF13722 5TM C-terminal transporter carbon starvation CstA AYR67_04925 PF04328 Selenoprotein, putative AYR67_04955 PF17853 GGDEF-like domain AYR67_04955 PF13556 PucR C-terminal helix-turn-helix domain AYR67_04955 PF06018 CodY GAF-like domain AYR67_04970 PF00171 Aldehyde dehydrogenase family AYR67_04975 PF00324 Amino acid permease AYR67_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_04980 PF03466 LysR substrate binding domain AYR67_04985 PF02028 BCCT, betaine/carnitine/choline family transporter AYR67_04990 PF02028 BCCT, betaine/carnitine/choline family transporter AYR67_04995 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR67_04995 PF00355 Rieske [2Fe-2S] domain AYR67_05005 PF18113 Rubredoxin binding C-terminal domain AYR67_05005 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_05010 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYR67_05010 PF01266 FAD dependent oxidoreductase AYR67_05030 PF00892 EamA-like transporter family AYR67_05040 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AYR67_05045 PF00083 Sugar (and other) transporter AYR67_05050 PF13378 Enolase C-terminal domain-like AYR67_05050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYR67_05055 PF08659 KR domain AYR67_05055 PF00698 Acyl transferase domain AYR67_05055 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_05055 PF08990 Erythronolide synthase docking AYR67_05055 PF09277 Erythronolide synthase, docking AYR67_05055 PF16197 Ketoacyl-synthetase C-terminal extension AYR67_05055 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR67_05055 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR67_05055 PF00550 Phosphopantetheine attachment site AYR67_05055 PF14765 Polyketide synthase dehydratase AYR67_05060 PF00440 Bacterial regulatory proteins, tetR family AYR67_05075 PF02678 Pirin AYR67_05075 PF17954 Quercetinase C-terminal cupin domain AYR67_05085 PF13309 HTH domain AYR67_05085 PF08348 YheO-like PAS domain AYR67_05095 PF00550 Phosphopantetheine attachment site AYR67_05095 PF00668 Condensation domain AYR67_05095 PF13193 AMP-binding enzyme C-terminal domain AYR67_05095 PF00501 AMP-binding enzyme AYR67_05100 PF00501 AMP-binding enzyme AYR67_05100 PF13193 AMP-binding enzyme C-terminal domain AYR67_05100 PF00668 Condensation domain AYR67_05100 PF00975 Thioesterase domain AYR67_05100 PF00550 Phosphopantetheine attachment site AYR67_05105 PF01032 FecCD transport family AYR67_05110 PF01032 FecCD transport family AYR67_05115 PF00005 ABC transporter AYR67_05120 PF01497 Periplasmic binding protein AYR67_05125 PF07715 TonB-dependent Receptor Plug Domain AYR67_05125 PF00593 TonB dependent receptor AYR67_05130 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYR67_05135 PF00501 AMP-binding enzyme AYR67_05135 PF00668 Condensation domain AYR67_05135 PF00550 Phosphopantetheine attachment site AYR67_05140 PF13193 AMP-binding enzyme C-terminal domain AYR67_05140 PF00501 AMP-binding enzyme AYR67_05145 PF00550 Phosphopantetheine attachment site AYR67_05145 PF00857 Isochorismatase family AYR67_05150 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYR67_05160 PF00664 ABC transporter transmembrane region AYR67_05160 PF00005 ABC transporter AYR67_05165 PF00664 ABC transporter transmembrane region AYR67_05165 PF00005 ABC transporter AYR67_05170 PF00975 Thioesterase domain AYR67_05180 PF00425 chorismate binding enzyme AYR67_05190 PF01208 Uroporphyrinogen decarboxylase (URO-D) AYR67_05195 PF05675 Protein of unknown function (DUF817) AYR67_05210 PF00144 Beta-lactamase AYR67_05230 PF01799 [2Fe-2S] binding domain AYR67_05230 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR67_05235 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYR67_05235 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYR67_05250 PF00218 Indole-3-glycerol phosphate synthase AYR67_05255 PF02885 Glycosyl transferase family, helical bundle domain AYR67_05255 PF00591 Glycosyl transferase family, a/b domain AYR67_05260 PF00593 TonB dependent receptor AYR67_05260 PF07715 TonB-dependent Receptor Plug Domain AYR67_05265 PF01433 Peptidase family M1 domain AYR67_05265 PF11838 ERAP1-like C-terminal domain AYR67_05270 PF00117 Glutamine amidotransferase class-I AYR67_05280 PF00854 POT family AYR67_05290 PF04345 Chorismate lyase AYR67_05295 PF01040 UbiA prenyltransferase family AYR67_05330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYR67_05330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYR67_05335 PF01784 NIF3 (NGG1p interacting factor 3) AYR67_05340 PF13180 PDZ domain AYR67_05345 PF12627 Probable RNA and SrmB- binding site of polymerase A AYR67_05345 PF01743 Poly A polymerase head domain AYR67_05350 PF01515 Phosphate acetyl/butaryl transferase AYR67_05350 PF00390 Malic enzyme, N-terminal domain AYR67_05350 PF03949 Malic enzyme, NAD binding domain AYR67_05355 PF03707 Bacterial signalling protein N terminal repeat AYR67_05355 PF00563 EAL domain AYR67_05355 PF00990 Diguanylate cyclase, GGDEF domain AYR67_05360 PF04452 RNA methyltransferase AYR67_05365 PF02219 Methylenetetrahydrofolate reductase AYR67_05370 PF05221 S-adenosyl-L-homocysteine hydrolase AYR67_05370 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AYR67_05385 PF09317 Domain of unknown function (DUF1974) AYR67_05385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_05385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_05390 PF04055 Radical SAM superfamily AYR67_05395 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_05395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR67_05410 PF07690 Major Facilitator Superfamily AYR67_05420 PF00557 Metallopeptidase family M24 AYR67_05425 PF00318 Ribosomal protein S2 AYR67_05430 PF00889 Elongation factor TS AYR67_05440 PF12833 Helix-turn-helix domain AYR67_05460 PF03330 Lytic transglycolase AYR67_05460 PF05036 Sporulation related domain AYR67_05465 PF13406 Transglycosylase SLT domain AYR67_05470 PF01098 Cell cycle protein AYR67_05480 PF14489 QueF-like protein AYR67_05480 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AYR67_05485 PF01061 ABC-2 type transporter AYR67_05490 PF00005 ABC transporter AYR67_05520 PF00464 Serine hydroxymethyltransferase AYR67_05525 PF02321 Outer membrane efflux protein AYR67_05530 PF00873 AcrB/AcrD/AcrF family AYR67_05535 PF13533 Biotin-lipoyl like AYR67_05540 PF03466 LysR substrate binding domain AYR67_05540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_05545 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR67_05550 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_05555 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_05560 PF00005 ABC transporter AYR67_05565 PF00893 Small Multidrug Resistance protein AYR67_05570 PF00037 4Fe-4S binding domain AYR67_05580 PF00155 Aminotransferase class I and II AYR67_05580 PF00392 Bacterial regulatory proteins, gntR family AYR67_05585 PF02567 Phenazine biosynthesis-like protein AYR67_05590 PF00175 Oxidoreductase NAD-binding domain AYR67_05590 PF00970 Oxidoreductase FAD-binding domain AYR67_05595 PF01980 tRNA-methyltransferase O AYR67_05595 PF18389 TrmO C-terminal domain AYR67_05605 PF00437 Type II/IV secretion system protein AYR67_05615 PF00486 Transcriptional regulatory protein, C terminal AYR67_05615 PF00072 Response regulator receiver domain AYR67_05620 PF00512 His Kinase A (phospho-acceptor) domain AYR67_05620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_05620 PF08521 Two-component sensor kinase N-terminal AYR67_05630 PF00293 NUDIX domain AYR67_05640 PF00912 Transglycosylase AYR67_05640 PF14814 Bifunctional transglycosylase second domain AYR67_05640 PF00905 Penicillin binding protein transpeptidase domain AYR67_05645 PF01513 ATP-NAD kinase AYR67_05650 PF07023 Protein of unknown function (DUF1315) AYR67_05655 PF02885 Glycosyl transferase family, helical bundle domain AYR67_05655 PF00591 Glycosyl transferase family, a/b domain AYR67_05660 PF00375 Sodium:dicarboxylate symporter family AYR67_05665 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_05665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_05665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_05670 PF00756 Putative esterase AYR67_05675 PF01817 Chorismate mutase type II AYR67_05675 PF00800 Prephenate dehydratase AYR67_05675 PF01842 ACT domain AYR67_05680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYR67_05690 PF01546 Peptidase family M20/M25/M40 AYR67_05690 PF07687 Peptidase dimerisation domain AYR67_05695 PF12706 Beta-lactamase superfamily domain AYR67_05705 PF03883 Peroxide stress protein YaaA AYR67_05715 PF05690 Thiazole biosynthesis protein ThiG AYR67_05725 PF04241 Protein of unknown function (DUF423) AYR67_05730 PF04545 Sigma-70, region 4 AYR67_05730 PF04542 Sigma-70 region 2 AYR67_05730 PF00140 Sigma-70 factor, region 1.2 AYR67_05740 PF00313 'Cold-shock' DNA-binding domain AYR67_05745 PF00271 Helicase conserved C-terminal domain AYR67_05745 PF00270 DEAD/DEAH box helicase AYR67_05755 PF00881 Nitroreductase family AYR67_05760 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYR67_05760 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYR67_05780 PF01180 Dihydroorotate dehydrogenase AYR67_05785 PF02674 Colicin V production protein AYR67_05790 PF00156 Phosphoribosyl transferase domain AYR67_05805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR67_05805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR67_05810 PF01435 Peptidase family M48 AYR67_05815 PF09424 Yqey-like protein AYR67_05820 PF01165 Ribosomal protein S21 AYR67_05825 PF00814 Glycoprotease family AYR67_05845 PF00069 Protein kinase domain AYR67_05870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_05870 PF03466 LysR substrate binding domain AYR67_05875 PF00202 Aminotransferase class-III AYR67_05880 PF00171 Aldehyde dehydrogenase family AYR67_05885 PF00324 Amino acid permease AYR67_05915 PF04076 Bacterial OB fold (BOF) protein AYR67_05940 PF00561 alpha/beta hydrolase fold AYR67_05945 PF03616 Sodium/glutamate symporter AYR67_05955 PF00392 Bacterial regulatory proteins, gntR family AYR67_05955 PF07729 FCD domain AYR67_06005 PF08946 Osmosensory transporter coiled coil AYR67_06005 PF00083 Sugar (and other) transporter AYR67_06025 PF00155 Aminotransferase class I and II AYR67_06030 PF02080 TrkA-C domain AYR67_06030 PF06826 Predicted Permease Membrane Region AYR67_06040 PF04403 Paraquat-inducible protein A AYR67_06045 PF02470 MlaD protein AYR67_06060 PF13610 DDE domain AYR67_06075 PF00375 Sodium:dicarboxylate symporter family AYR67_06085 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYR67_06085 PF00753 Metallo-beta-lactamase superfamily AYR67_06090 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_06095 PF00005 ABC transporter AYR67_06095 PF09383 NIL domain AYR67_06100 PF03180 NLPA lipoprotein AYR67_06105 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AYR67_06105 PF02843 Phosphoribosylglycinamide synthetase, C domain AYR67_06105 PF02844 Phosphoribosylglycinamide synthetase, N domain AYR67_06110 PF01808 AICARFT/IMPCHase bienzyme AYR67_06110 PF02142 MGS-like domain AYR67_06115 PF02954 Bacterial regulatory protein, Fis family AYR67_06135 PF01134 Glucose inhibited division protein A AYR67_06135 PF13932 GidA associated domain AYR67_06145 PF14403 Circularly permuted ATP-grasp type 2 AYR67_06155 PF08379 Bacterial transglutaminase-like N-terminal region AYR67_06155 PF01841 Transglutaminase-like superfamily AYR67_06165 PF00842 Alanine racemase, C-terminal domain AYR67_06165 PF01168 Alanine racemase, N-terminal domain AYR67_06170 PF00772 DnaB-like helicase N terminal domain AYR67_06170 PF03796 DnaB-like helicase C terminal domain AYR67_06175 PF03948 Ribosomal protein L9, C-terminal domain AYR67_06175 PF01281 Ribosomal protein L9, N-terminal domain AYR67_06180 PF01084 Ribosomal protein S18 AYR67_06185 PF01250 Ribosomal protein S6 AYR67_06190 PF01040 UbiA prenyltransferase family AYR67_06195 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AYR67_06200 PF00510 Cytochrome c oxidase subunit III AYR67_06205 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYR67_06210 PF06481 COX Aromatic Rich Motif AYR67_06210 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AYR67_06220 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYR67_06220 PF02896 PEP-utilising enzyme, TIM barrel domain AYR67_06220 PF00391 PEP-utilising enzyme, mobile domain AYR67_06225 PF03618 Kinase/pyrophosphorylase AYR67_06235 PF14883 Hypothetical glycosyl hydrolase family 13 AYR67_06235 PF01522 Polysaccharide deacetylase AYR67_06240 PF00535 Glycosyl transferase family 2 AYR67_06245 PF13994 PgaD-like protein AYR67_06255 PF00296 Luciferase-like monooxygenase AYR67_06270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_06270 PF03466 LysR substrate binding domain AYR67_06280 PF00472 RF-1 domain AYR67_06280 PF03462 PCRF domain AYR67_06285 PF17827 PrmC N-terminal domain AYR67_06285 PF13847 Methyltransferase domain AYR67_06290 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_06295 PF09084 NMT1/THI5 like AYR67_06300 PF12833 Helix-turn-helix domain AYR67_06305 PF00106 short chain dehydrogenase AYR67_06310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_06310 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_06310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_06315 PF13193 AMP-binding enzyme C-terminal domain AYR67_06315 PF00501 AMP-binding enzyme AYR67_06320 PF01613 Flavin reductase like domain AYR67_06325 PF00899 ThiF family AYR67_06330 PF03109 ABC1 family AYR67_06345 PF03814 Potassium-transporting ATPase A subunit AYR67_06355 PF02669 K+-transporting ATPase, c chain AYR67_06360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_06360 PF02702 Osmosensitive K+ channel His kinase sensor domain AYR67_06360 PF00512 His Kinase A (phospho-acceptor) domain AYR67_06360 PF13493 Domain of unknown function (DUF4118) AYR67_06365 PF00072 Response regulator receiver domain AYR67_06365 PF00486 Transcriptional regulatory protein, C terminal AYR67_06370 PF00120 Glutamine synthetase, catalytic domain AYR67_06380 PF03232 Ubiquinone biosynthesis protein COQ7 AYR67_06385 PF07690 Major Facilitator Superfamily AYR67_06390 PF01103 Surface antigen AYR67_06390 PF07244 Surface antigen variable number repeat AYR67_06390 PF17243 POTRA domain TamA domain 1 AYR67_06405 PF11791 Aconitate B N-terminal domain AYR67_06405 PF00330 Aconitase family (aconitate hydratase) AYR67_06405 PF06434 Aconitate hydratase 2 N-terminus AYR67_06415 PF00027 Cyclic nucleotide-binding domain AYR67_06415 PF00520 Ion transport protein AYR67_06420 PF07690 Major Facilitator Superfamily AYR67_06435 PF03466 LysR substrate binding domain AYR67_06435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_06440 PF04284 Protein of unknown function (DUF441) AYR67_06450 PF01479 S4 domain AYR67_06450 PF00849 RNA pseudouridylate synthase AYR67_06465 PF00849 RNA pseudouridylate synthase AYR67_06465 PF01479 S4 domain AYR67_06470 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AYR67_06475 PF01119 DNA mismatch repair protein, C-terminal domain AYR67_06475 PF08676 MutL C terminal dimerisation domain AYR67_06485 PF17209 Hfq protein AYR67_06495 PF00881 Nitroreductase family AYR67_06505 PF00149 Calcineurin-like phosphoesterase AYR67_06510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYR67_06515 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR67_06515 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AYR67_06520 PF00117 Glutamine amidotransferase class-I AYR67_06520 PF00958 GMP synthase C terminal domain AYR67_06520 PF02540 NAD synthase AYR67_06525 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AYR67_06530 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AYR67_06535 PF13520 Amino acid permease AYR67_06540 PF00171 Aldehyde dehydrogenase family AYR67_06555 PF00465 Iron-containing alcohol dehydrogenase AYR67_06560 PF05970 PIF1-like helicase AYR67_06560 PF14493 Helix-turn-helix domain AYR67_06570 PF06445 GyrI-like small molecule binding domain AYR67_06575 PF02110 Hydroxyethylthiazole kinase family AYR67_06590 PF01433 Peptidase family M1 domain AYR67_06590 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AYR67_06590 PF11940 Domain of unknown function (DUF3458) Ig-like fold AYR67_06625 PF01817 Chorismate mutase type II AYR67_06630 PF01037 Lrp/AsnC ligand binding domain AYR67_06640 PF00440 Bacterial regulatory proteins, tetR family AYR67_06645 PF00593 TonB dependent receptor AYR67_06645 PF07715 TonB-dependent Receptor Plug Domain AYR67_06650 PF00924 Mechanosensitive ion channel AYR67_06690 PF07715 TonB-dependent Receptor Plug Domain AYR67_06690 PF00593 TonB dependent receptor AYR67_06710 PF00005 ABC transporter AYR67_06710 PF12848 ABC transporter AYR67_06715 PF00582 Universal stress protein family AYR67_06735 PF00689 Cation transporting ATPase, C-terminus AYR67_06735 PF00690 Cation transporter/ATPase, N-terminus AYR67_06740 PF02308 MgtC family AYR67_06745 PF03594 Benzoate membrane transport protein AYR67_06750 PF01037 Lrp/AsnC ligand binding domain AYR67_06755 PF01810 LysE type translocator AYR67_06765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_06765 PF03466 LysR substrate binding domain AYR67_06775 PF02803 Thiolase, C-terminal domain AYR67_06775 PF00108 Thiolase, N-terminal domain AYR67_06800 PF07690 Major Facilitator Superfamily AYR67_06805 PF12169 DNA polymerase III subunits gamma and tau domain III AYR67_06805 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AYR67_06805 PF12170 DNA polymerase III tau subunit V interacting with alpha AYR67_06810 PF05506 Domain of unknown function (DUF756) AYR67_06810 PF04185 Phosphoesterase family AYR67_06815 PF03061 Thioesterase superfamily AYR67_06820 PF00465 Iron-containing alcohol dehydrogenase AYR67_06830 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYR67_06835 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AYR67_06835 PF01565 FAD binding domain AYR67_06850 PF01645 Conserved region in glutamate synthase AYR67_06955 PF01555 DNA methylase AYR67_07035 PF07007 Lysozyme inhibitor LprI AYR67_07045 PF13737 Transposase DDE domain AYR67_07185 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AYR67_07225 PF00712 DNA polymerase III beta subunit, N-terminal domain AYR67_07225 PF02768 DNA polymerase III beta subunit, C-terminal domain AYR67_07225 PF02767 DNA polymerase III beta subunit, central domain AYR67_07360 PF00665 Integrase core domain AYR67_07360 PF13333 Integrase core domain AYR67_07360 PF13276 HTH-like domain AYR67_07370 PF12832 MFS_1 like family AYR67_07380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR67_07380 PF00289 Biotin carboxylase, N-terminal domain AYR67_07380 PF02785 Biotin carboxylase C-terminal domain AYR67_07385 PF00364 Biotin-requiring enzyme AYR67_07390 PF01220 Dehydroquinase class II AYR67_07395 PF00817 impB/mucB/samB family AYR67_07395 PF11799 impB/mucB/samB family C-terminal domain AYR67_07395 PF13438 Domain of unknown function (DUF4113) AYR67_07400 PF00005 ABC transporter AYR67_07405 PF00486 Transcriptional regulatory protein, C terminal AYR67_07405 PF00072 Response regulator receiver domain AYR67_07415 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYR67_07415 PF13806 Rieske-like [2Fe-2S] domain AYR67_07415 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYR67_07415 PF04324 BFD-like [2Fe-2S] binding domain AYR67_07415 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYR67_07415 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_07420 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYR67_07420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_07420 PF04324 BFD-like [2Fe-2S] binding domain AYR67_07420 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYR67_07420 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYR67_07425 PF01568 Molydopterin dinucleotide binding domain AYR67_07425 PF04324 BFD-like [2Fe-2S] binding domain AYR67_07425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR67_07425 PF00384 Molybdopterin oxidoreductase AYR67_07430 PF12804 MobA-like NTP transferase domain AYR67_07435 PF00384 Molybdopterin oxidoreductase AYR67_07435 PF01568 Molydopterin dinucleotide binding domain AYR67_07435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR67_07440 PF04055 Radical SAM superfamily AYR67_07440 PF06463 Molybdenum Cofactor Synthesis C AYR67_07450 PF02391 MoaE protein AYR67_07455 PF01967 MoaC family AYR67_07455 PF00994 Probable molybdopterin binding domain AYR67_07460 PF00994 Probable molybdopterin binding domain AYR67_07460 PF03453 MoeA N-terminal region (domain I and II) AYR67_07460 PF03454 MoeA C-terminal region (domain IV) AYR67_07465 PF01638 HxlR-like helix-turn-helix AYR67_07470 PF00155 Aminotransferase class I and II AYR67_07470 PF00392 Bacterial regulatory proteins, gntR family AYR67_07475 PF00892 EamA-like transporter family AYR67_07495 PF02635 DsrE/DsrF-like family AYR67_07500 PF16363 GDP-mannose 4,6 dehydratase AYR67_07505 PF00206 Lyase AYR67_07505 PF10415 Fumarase C C-terminus AYR67_07515 PF01636 Phosphotransferase enzyme family AYR67_07520 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AYR67_07540 PF00440 Bacterial regulatory proteins, tetR family AYR67_07540 PF02909 Tetracyclin repressor-like, C-terminal domain AYR67_07595 PF01740 STAS domain AYR67_07595 PF00916 Sulfate permease family AYR67_07600 PF00582 Universal stress protein family AYR67_07630 PF00665 Integrase core domain AYR67_07655 PF01266 FAD dependent oxidoreductase AYR67_07665 PF02542 YgbB family AYR67_07675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYR67_07675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYR67_07680 PF00440 Bacterial regulatory proteins, tetR family AYR67_07685 PF02954 Bacterial regulatory protein, Fis family AYR67_07685 PF00072 Response regulator receiver domain AYR67_07685 PF00158 Sigma-54 interaction domain AYR67_07690 PF00989 PAS fold AYR67_07690 PF00512 His Kinase A (phospho-acceptor) domain AYR67_07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_07695 PF04055 Radical SAM superfamily AYR67_07695 PF18693 TRAM domain AYR67_07695 PF00919 Uncharacterized protein family UPF0004 AYR67_07700 PF00696 Amino acid kinase family AYR67_07705 PF01765 Ribosome recycling factor AYR67_07710 PF01255 Putative undecaprenyl diphosphate synthase AYR67_07720 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AYR67_07720 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AYR67_07720 PF13288 DXP reductoisomerase C-terminal domain AYR67_07725 PF17820 PDZ domain AYR67_07725 PF02163 Peptidase family M50 AYR67_07725 PF13180 PDZ domain AYR67_07730 PF01103 Surface antigen AYR67_07730 PF07244 Surface antigen variable number repeat AYR67_07740 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_07740 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYR67_07745 PF07977 FabA-like domain AYR67_07750 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AYR67_07750 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_07765 PF02631 RecX family AYR67_07770 PF00154 recA bacterial DNA recombination protein AYR67_07775 PF01479 S4 domain AYR67_07780 PF13419 Haloacid dehalogenase-like hydrolase AYR67_07805 PF01037 Lrp/AsnC ligand binding domain AYR67_07810 PF00266 Aminotransferase class-V AYR67_07815 PF00324 Amino acid permease AYR67_07825 PF00082 Subtilase family AYR67_07825 PF05922 Peptidase inhibitor I9 AYR67_07830 PF00916 Sulfate permease family AYR67_07830 PF01740 STAS domain AYR67_07835 PF02586 SOS response associated peptidase (SRAP) AYR67_07840 PF07995 Glucose / Sorbosone dehydrogenase AYR67_07850 PF03707 Bacterial signalling protein N terminal repeat AYR67_07850 PF00990 Diguanylate cyclase, GGDEF domain AYR67_07850 PF00563 EAL domain AYR67_07870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AYR67_07870 PF02378 Phosphotransferase system, EIIC AYR67_07875 PF00294 pfkB family carbohydrate kinase AYR67_07880 PF05524 PEP-utilising enzyme, N-terminal AYR67_07880 PF00391 PEP-utilising enzyme, mobile domain AYR67_07880 PF02896 PEP-utilising enzyme, TIM barrel domain AYR67_07880 PF00381 PTS HPr component phosphorylation site AYR67_07880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AYR67_07905 PF05525 Branched-chain amino acid transport protein AYR67_07910 PF00557 Metallopeptidase family M24 AYR67_07915 PF03466 LysR substrate binding domain AYR67_07915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_07925 PF00462 Glutaredoxin AYR67_07930 PF00202 Aminotransferase class-III AYR67_07935 PF00571 CBS domain AYR67_07935 PF00478 IMP dehydrogenase / GMP reductase domain AYR67_07960 PF02881 SRP54-type protein, helical bundle domain AYR67_07960 PF00448 SRP54-type protein, GTPase domain AYR67_07970 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AYR67_07985 PF08173 Membrane bound YbgT-like protein AYR67_07990 PF02322 Cytochrome bd terminal oxidase subunit II AYR67_07995 PF01654 Cytochrome bd terminal oxidase subunit I AYR67_08005 PF07290 Protein of unknown function (DUF1449) AYR67_08015 PF00294 pfkB family carbohydrate kinase AYR67_08020 PF00593 TonB dependent receptor AYR67_08020 PF07715 TonB-dependent Receptor Plug Domain AYR67_08025 PF05193 Peptidase M16 inactive domain AYR67_08025 PF00675 Insulinase (Peptidase family M16) AYR67_08025 PF08367 Peptidase M16C associated AYR67_08030 PF02253 Phospholipase A1 AYR67_08035 PF02386 Cation transport protein AYR67_08040 PF02080 TrkA-C domain AYR67_08040 PF02254 TrkA-N domain AYR67_08045 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_08045 PF00585 C-terminal regulatory domain of Threonine dehydratase AYR67_08050 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AYR67_08065 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYR67_08065 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYR67_08075 PF02617 ATP-dependent Clp protease adaptor protein ClpS AYR67_08080 PF10431 C-terminal, D2-small domain, of ClpB protein AYR67_08080 PF17871 AAA lid domain AYR67_08080 PF07724 AAA domain (Cdc48 subfamily) AYR67_08080 PF02861 Clp amino terminal domain, pathogenicity island component AYR67_08080 PF00004 ATPase family associated with various cellular activities (AAA) AYR67_08085 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AYR67_08090 PF00793 DAHP synthetase I family AYR67_08105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR67_08105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_08135 PF06418 CTP synthase N-terminus AYR67_08135 PF00117 Glutamine amidotransferase class-I AYR67_08140 PF00793 DAHP synthetase I family AYR67_08145 PF00113 Enolase, C-terminal TIM barrel domain AYR67_08145 PF03952 Enolase, N-terminal domain AYR67_08150 PF04239 Protein of unknown function (DUF421) AYR67_08155 PF04977 Septum formation initiator AYR67_08160 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AYR67_08165 PF01144 Coenzyme A transferase AYR67_08170 PF01144 Coenzyme A transferase AYR67_08175 PF00108 Thiolase, N-terminal domain AYR67_08175 PF02803 Thiolase, C-terminal domain AYR67_08180 PF10397 Adenylosuccinate lyase C-terminus AYR67_08180 PF00206 Lyase AYR67_08185 PF00561 alpha/beta hydrolase fold AYR67_08190 PF07690 Major Facilitator Superfamily AYR67_08195 PF02627 Carboxymuconolactone decarboxylase family AYR67_08200 PF00775 Dioxygenase AYR67_08200 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AYR67_08205 PF00775 Dioxygenase AYR67_08210 PF01487 Type I 3-dehydroquinase AYR67_08215 PF05048 Periplasmic copper-binding protein (NosD) AYR67_08220 PF04966 Carbohydrate-selective porin, OprB family AYR67_08225 PF13360 PQQ-like domain AYR67_08225 PF01011 PQQ enzyme repeat AYR67_08235 PF04143 Sulphur transport AYR67_08245 PF00753 Metallo-beta-lactamase superfamily AYR67_08250 PF09339 IclR helix-turn-helix domain AYR67_08250 PF01614 Bacterial transcriptional regulator AYR67_08255 PF03466 LysR substrate binding domain AYR67_08255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_08260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_08260 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_08260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_08275 PF00106 short chain dehydrogenase AYR67_08285 PF07690 Major Facilitator Superfamily AYR67_08295 PF01425 Amidase AYR67_08300 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR67_08315 PF00355 Rieske [2Fe-2S] domain AYR67_08315 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR67_08330 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR67_08330 PF00175 Oxidoreductase NAD-binding domain AYR67_08335 PF01613 Flavin reductase like domain AYR67_08340 PF02311 AraC-like ligand binding domain AYR67_08340 PF12833 Helix-turn-helix domain AYR67_08345 PF02727 Copper amine oxidase, N2 domain AYR67_08345 PF02728 Copper amine oxidase, N3 domain AYR67_08345 PF07833 Copper amine oxidase N-terminal domain AYR67_08345 PF01179 Copper amine oxidase, enzyme domain AYR67_08355 PF00171 Aldehyde dehydrogenase family AYR67_08360 PF01804 Penicillin amidase AYR67_08365 PF12146 Serine aminopeptidase, S33 AYR67_08370 PF00108 Thiolase, N-terminal domain AYR67_08370 PF02803 Thiolase, C-terminal domain AYR67_08375 PF01144 Coenzyme A transferase AYR67_08380 PF01144 Coenzyme A transferase AYR67_08385 PF04444 Catechol dioxygenase N terminus AYR67_08385 PF00775 Dioxygenase AYR67_08390 PF02426 Muconolactone delta-isomerase AYR67_08395 PF13378 Enolase C-terminal domain-like AYR67_08395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYR67_08400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_08400 PF03466 LysR substrate binding domain AYR67_08410 PF07729 FCD domain AYR67_08410 PF00392 Bacterial regulatory proteins, gntR family AYR67_08415 PF00920 Dehydratase family AYR67_08420 PF07690 Major Facilitator Superfamily AYR67_08430 PF00171 Aldehyde dehydrogenase family AYR67_08450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_08450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_08450 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_08460 PF00158 Sigma-54 interaction domain AYR67_08460 PF02954 Bacterial regulatory protein, Fis family AYR67_08460 PF06506 Propionate catabolism activator AYR67_08465 PF00501 AMP-binding enzyme AYR67_08465 PF13193 AMP-binding enzyme C-terminal domain AYR67_08470 PF04341 Protein of unknown function, DUF485 AYR67_08475 PF00474 Sodium:solute symporter family AYR67_08480 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_08480 PF00107 Zinc-binding dehydrogenase AYR67_08485 PF00171 Aldehyde dehydrogenase family AYR67_08495 PF00561 alpha/beta hydrolase fold AYR67_08500 PF00199 Catalase AYR67_08500 PF06628 Catalase-related immune-responsive AYR67_08520 PF07859 alpha/beta hydrolase fold AYR67_08525 PF01047 MarR family AYR67_08530 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_08530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR67_08535 PF00106 short chain dehydrogenase AYR67_08540 PF01872 RibD C-terminal domain AYR67_08545 PF00376 MerR family regulatory protein AYR67_08545 PF09278 MerR, DNA binding AYR67_08555 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_08565 PF12706 Beta-lactamase superfamily domain AYR67_08570 PF08359 YsiA-like protein, C-terminal region AYR67_08570 PF00440 Bacterial regulatory proteins, tetR family AYR67_08580 PF00857 Isochorismatase family AYR67_08585 PF03466 LysR substrate binding domain AYR67_08585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_08590 PF07995 Glucose / Sorbosone dehydrogenase AYR67_08595 PF02254 TrkA-N domain AYR67_08595 PF00999 Sodium/hydrogen exchanger family AYR67_08605 PF07687 Peptidase dimerisation domain AYR67_08605 PF01546 Peptidase family M20/M25/M40 AYR67_08615 PF08479 POTRA domain, ShlB-type AYR67_08615 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AYR67_08615 PF17287 POTRA domain AYR67_08620 PF04829 Pre-toxin domain with VENN motif AYR67_08620 PF13018 Extended Signal Peptide of Type V secretion system AYR67_08620 PF05860 haemagglutination activity domain AYR67_08620 PF13332 Hemagglutinin repeat AYR67_08635 PF07690 Major Facilitator Superfamily AYR67_08640 PF04909 Amidohydrolase AYR67_08655 PF08450 SMP-30/Gluconolactonase/LRE-like region AYR67_08670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_08670 PF03466 LysR substrate binding domain AYR67_08690 PF07690 Major Facilitator Superfamily AYR67_08695 PF01842 ACT domain AYR67_08695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYR67_08695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYR67_08700 PF03737 Aldolase/RraA AYR67_08720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR67_08720 PF00529 HlyD membrane-fusion protein of T1SS AYR67_08735 PF00171 Aldehyde dehydrogenase family AYR67_08740 PF00920 Dehydratase family AYR67_08750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_08750 PF03466 LysR substrate binding domain AYR67_08755 PF01370 NAD dependent epimerase/dehydratase family AYR67_08760 PF07690 Major Facilitator Superfamily AYR67_08765 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR67_08765 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR67_08770 PF12833 Helix-turn-helix domain AYR67_08770 PF06719 AraC-type transcriptional regulator N-terminus AYR67_08785 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_08785 PF00107 Zinc-binding dehydrogenase AYR67_08800 PF00005 ABC transporter AYR67_08820 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYR67_08820 PF14572 Phosphoribosyl synthetase-associated domain AYR67_08825 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYR67_08895 PF00196 Bacterial regulatory proteins, luxR family AYR67_08900 PF01425 Amidase AYR67_08905 PF13533 Biotin-lipoyl like AYR67_08910 PF07690 Major Facilitator Superfamily AYR67_08935 PF01975 Survival protein SurE AYR67_08945 PF02824 TGS domain AYR67_08945 PF13291 ACT domain AYR67_08945 PF04607 Region found in RelA / SpoT proteins AYR67_08995 PF12146 Serine aminopeptidase, S33 AYR67_09000 PF12833 Helix-turn-helix domain AYR67_09000 PF02311 AraC-like ligand binding domain AYR67_09010 PF16527 Two-component sensor protein CpxA, periplasmic domain AYR67_09010 PF00672 HAMP domain AYR67_09010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_09010 PF00512 His Kinase A (phospho-acceptor) domain AYR67_09015 PF00072 Response regulator receiver domain AYR67_09015 PF00486 Transcriptional regulatory protein, C terminal AYR67_09020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR67_09020 PF00529 HlyD membrane-fusion protein of T1SS AYR67_09025 PF00873 AcrB/AcrD/AcrF family AYR67_09030 PF02321 Outer membrane efflux protein AYR67_09035 PF12146 Serine aminopeptidase, S33 AYR67_09040 PF00743 Flavin-binding monooxygenase-like AYR67_09045 PF01593 Flavin containing amine oxidoreductase AYR67_09060 PF01266 FAD dependent oxidoreductase AYR67_09080 PF16970 Type-1 fimbrial protein, A AYR67_09095 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYR67_09095 PF02753 Pili assembly chaperone PapD, C-terminal domain AYR67_09100 PF00577 Outer membrane usher protein AYR67_09100 PF13954 PapC N-terminal domain AYR67_09100 PF13953 PapC C-terminal domain AYR67_09105 PF00419 Fimbrial protein AYR67_09115 PF00107 Zinc-binding dehydrogenase AYR67_09115 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_09125 PF00199 Catalase AYR67_09140 PF13091 PLD-like domain AYR67_09160 PF01244 Membrane dipeptidase (Peptidase family M19) AYR67_09165 PF04055 Radical SAM superfamily AYR67_09165 PF13186 Iron-sulfur cluster-binding domain AYR67_09170 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AYR67_09175 PF03070 TENA/THI-4/PQQC family AYR67_09180 PF12706 Beta-lactamase superfamily domain AYR67_09185 PF13089 Polyphosphate kinase N-terminal domain AYR67_09185 PF13090 Polyphosphate kinase C-terminal domain 2 AYR67_09185 PF02503 Polyphosphate kinase middle domain AYR67_09185 PF17941 Polyphosphate kinase C-terminal domain 1 AYR67_09190 PF00149 Calcineurin-like phosphoesterase AYR67_09200 PF00857 Isochorismatase family AYR67_09200 PF00550 Phosphopantetheine attachment site AYR67_09205 PF00106 short chain dehydrogenase AYR67_09210 PF03459 TOBE domain AYR67_09210 PF00005 ABC transporter AYR67_09215 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_09225 PF03459 TOBE domain AYR67_09225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_09230 PF00355 Rieske [2Fe-2S] domain AYR67_09230 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR67_09235 PF00866 Ring hydroxylating beta subunit AYR67_09240 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR67_09240 PF00970 Oxidoreductase FAD-binding domain AYR67_09240 PF00175 Oxidoreductase NAD-binding domain AYR67_09245 PF14525 AraC-binding-like domain AYR67_09245 PF12833 Helix-turn-helix domain AYR67_09255 PF01613 Flavin reductase like domain AYR67_09270 PF01738 Dienelactone hydrolase family AYR67_09280 PF06719 AraC-type transcriptional regulator N-terminus AYR67_09280 PF12833 Helix-turn-helix domain AYR67_09310 PF03466 LysR substrate binding domain AYR67_09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_09315 PF01144 Coenzyme A transferase AYR67_09320 PF01144 Coenzyme A transferase AYR67_09325 PF02667 Short chain fatty acid transporter AYR67_09330 PF02803 Thiolase, C-terminal domain AYR67_09330 PF00108 Thiolase, N-terminal domain AYR67_09335 PF03466 LysR substrate binding domain AYR67_09335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_09340 PF03466 LysR substrate binding domain AYR67_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_09355 PF10415 Fumarase C C-terminus AYR67_09355 PF00206 Lyase AYR67_09360 PF07715 TonB-dependent Receptor Plug Domain AYR67_09360 PF00593 TonB dependent receptor AYR67_09365 PF00083 Sugar (and other) transporter AYR67_09380 PF00005 ABC transporter AYR67_09385 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_09390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYR67_09415 PF02525 Flavodoxin-like fold AYR67_09420 PF01638 HxlR-like helix-turn-helix AYR67_09425 PF12833 Helix-turn-helix domain AYR67_09425 PF06445 GyrI-like small molecule binding domain AYR67_09440 PF01925 Sulfite exporter TauE/SafE AYR67_09445 PF04273 Putative phosphatase (DUF442) AYR67_09445 PF00753 Metallo-beta-lactamase superfamily AYR67_09450 PF04273 Putative phosphatase (DUF442) AYR67_09450 PF00753 Metallo-beta-lactamase superfamily AYR67_09455 PF02954 Bacterial regulatory protein, Fis family AYR67_09455 PF00072 Response regulator receiver domain AYR67_09455 PF00158 Sigma-54 interaction domain AYR67_09460 PF01062 Bestrophin, RFP-TM, chloride channel AYR67_09465 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_09465 PF00107 Zinc-binding dehydrogenase AYR67_09470 PF00106 short chain dehydrogenase AYR67_09475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_09475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYR67_09480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYR67_09480 PF00364 Biotin-requiring enzyme AYR67_09480 PF02817 e3 binding domain AYR67_09485 PF02779 Transketolase, pyrimidine binding domain AYR67_09485 PF02780 Transketolase, C-terminal domain AYR67_09490 PF00676 Dehydrogenase E1 component AYR67_09495 PF04055 Radical SAM superfamily AYR67_09510 PF08448 PAS fold AYR67_09510 PF00990 Diguanylate cyclase, GGDEF domain AYR67_09515 PF01264 Chorismate synthase AYR67_09520 PF05175 Methyltransferase small domain AYR67_09525 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_09535 PF17862 AAA+ lid domain AYR67_09535 PF01434 Peptidase family M41 AYR67_09535 PF00004 ATPase family associated with various cellular activities (AAA) AYR67_09545 PF05166 YcgL domain AYR67_09565 PF00570 HRDC domain AYR67_09565 PF01612 3'-5' exonuclease AYR67_09570 PF02132 RecR protein AYR67_09570 PF13662 Toprim domain AYR67_09575 PF02575 YbaB/EbfC DNA-binding family AYR67_09585 PF01053 Cys/Met metabolism PLP-dependent enzyme AYR67_09590 PF00561 alpha/beta hydrolase fold AYR67_09595 PF08241 Methyltransferase domain AYR67_09625 PF01230 HIT domain AYR67_09670 PF00005 ABC transporter AYR67_09675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR67_09685 PF02684 Lipid-A-disaccharide synthetase AYR67_09690 PF07715 TonB-dependent Receptor Plug Domain AYR67_09690 PF00593 TonB dependent receptor AYR67_09710 PF01925 Sulfite exporter TauE/SafE AYR67_09715 PF00793 DAHP synthetase I family AYR67_09720 PF02654 Cobalamin-5-phosphate synthase AYR67_09735 PF02277 Phosphoribosyltransferase AYR67_09740 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AYR67_09750 PF13419 Haloacid dehalogenase-like hydrolase AYR67_09775 PF07715 TonB-dependent Receptor Plug Domain AYR67_09775 PF00593 TonB dependent receptor AYR67_09790 PF04183 IucA / IucC family AYR67_09790 PF06276 Ferric iron reductase FhuF-like transporter AYR67_09795 PF04183 IucA / IucC family AYR67_09795 PF06276 Ferric iron reductase FhuF-like transporter AYR67_09800 PF07690 Major Facilitator Superfamily AYR67_09805 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYR67_09810 PF06276 Ferric iron reductase FhuF-like transporter AYR67_09810 PF04183 IucA / IucC family AYR67_09815 PF04073 Aminoacyl-tRNA editing domain AYR67_09825 PF03109 ABC1 family AYR67_09830 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_09830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_09830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_09835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_09835 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_09835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_09840 PF00487 Fatty acid desaturase AYR67_09845 PF12852 Cupin AYR67_09845 PF12833 Helix-turn-helix domain AYR67_09850 PF09312 SurA N-terminal domain AYR67_09850 PF00639 PPIC-type PPIASE domain AYR67_09855 PF00216 Bacterial DNA-binding protein AYR67_09870 PF02082 Transcriptional regulator AYR67_09875 PF00266 Aminotransferase class-V AYR67_09880 PF01592 NifU-like N terminal domain AYR67_09885 PF01521 Iron-sulphur cluster biosynthesis AYR67_09890 PF07743 HSCB C-terminal oligomerisation domain AYR67_09890 PF00226 DnaJ domain AYR67_09895 PF00012 Hsp70 protein AYR67_09900 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR67_09905 PF00211 Adenylate and Guanylate cyclase catalytic domain AYR67_09915 PF03461 TRCF domain AYR67_09915 PF02559 CarD-like/TRCF domain AYR67_09915 PF00271 Helicase conserved C-terminal domain AYR67_09915 PF17757 UvrB interaction domain AYR67_09915 PF00270 DEAD/DEAH box helicase AYR67_09935 PF03737 Aldolase/RraA AYR67_09940 PF13460 NAD(P)H-binding AYR67_09945 PF01649 Ribosomal protein S20 AYR67_09955 PF00459 Inositol monophosphatase family AYR67_09970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYR67_09970 PF00005 ABC transporter AYR67_09975 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_09980 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_09985 PF01432 Peptidase family M3 AYR67_10000 PF07715 TonB-dependent Receptor Plug Domain AYR67_10000 PF00593 TonB dependent receptor AYR67_10010 PF01618 MotA/TolQ/ExbB proton channel family AYR67_10015 PF02472 Biopolymer transport protein ExbD/TolR AYR67_10020 PF02472 Biopolymer transport protein ExbD/TolR AYR67_10030 PF01274 Malate synthase AYR67_10035 PF03969 AFG1-like ATPase AYR67_10045 PF00743 Flavin-binding monooxygenase-like AYR67_10055 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AYR67_10065 PF00216 Bacterial DNA-binding protein AYR67_10070 PF00575 S1 RNA binding domain AYR67_10075 PF02224 Cytidylate kinase AYR67_10085 PF14437 MafB19-like deaminase AYR67_10095 PF03167 Uracil DNA glycosylase superfamily AYR67_10105 PF03934 Type II secretion system (T2SS), protein K AYR67_10110 PF11612 Type II secretion system (T2SS), protein J AYR67_10110 PF07963 Prokaryotic N-terminal methylation motif AYR67_10115 PF07963 Prokaryotic N-terminal methylation motif AYR67_10115 PF02501 Type II secretion system (T2SS), protein I AYR67_10130 PF01026 TatD related DNase AYR67_10140 PF09115 DNA polymerase III, delta subunit, C terminal AYR67_10145 PF02348 Cytidylyltransferase AYR67_10150 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AYR67_10155 PF00664 ABC transporter transmembrane region AYR67_10155 PF00005 ABC transporter AYR67_10165 PF01618 MotA/TolQ/ExbB proton channel family AYR67_10170 PF02195 ParB-like nuclease domain AYR67_10170 PF17762 HTH domain found in ParB protein AYR67_10175 PF13614 AAA domain AYR67_10180 PF02527 rRNA small subunit methyltransferase G AYR67_10185 PF00483 Nucleotidyl transferase AYR67_10190 PF01636 Phosphotransferase enzyme family AYR67_10195 PF03968 OstA-like protein AYR67_10195 PF04453 LPS transport system D AYR67_10200 PF09312 SurA N-terminal domain AYR67_10200 PF00639 PPIC-type PPIASE domain AYR67_10205 PF01116 Fructose-bisphosphate aldolase class-II AYR67_10215 PF00162 Phosphoglycerate kinase AYR67_10225 PF02545 Maf-like protein AYR67_10230 PF08007 Cupin superfamily protein AYR67_10245 PF00375 Sodium:dicarboxylate symporter family AYR67_10250 PF06912 Protein of unknown function (DUF1275) AYR67_10255 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AYR67_10260 PF00664 ABC transporter transmembrane region AYR67_10260 PF00005 ABC transporter AYR67_10270 PF12833 Helix-turn-helix domain AYR67_10270 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AYR67_10275 PF01597 Glycine cleavage H-protein AYR67_10280 PF02146 Sir2 family AYR67_10285 PF00474 Sodium:solute symporter family AYR67_10290 PF01037 Lrp/AsnC ligand binding domain AYR67_10295 PF00171 Aldehyde dehydrogenase family AYR67_10295 PF01619 Proline dehydrogenase AYR67_10295 PF14850 DNA-binding domain of Proline dehydrogenase AYR67_10295 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AYR67_10300 PF04229 GrpB protein AYR67_10305 PF05958 tRNA (Uracil-5-)-methyltransferase AYR67_10315 PF09992 Phosphodiester glycosidase AYR67_10325 PF04264 YceI-like domain AYR67_10335 PF02779 Transketolase, pyrimidine binding domain AYR67_10335 PF02780 Transketolase, C-terminal domain AYR67_10335 PF00456 Transketolase, thiamine diphosphate binding domain AYR67_10340 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYR67_10340 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYR67_10340 PF02772 S-adenosylmethionine synthetase, central domain AYR67_10360 PF00905 Penicillin binding protein transpeptidase domain AYR67_10375 PF02075 Crossover junction endodeoxyribonuclease RuvC AYR67_10380 PF01256 Carbohydrate kinase AYR67_10380 PF03853 YjeF-related protein N-terminus AYR67_10385 PF08331 Domain of unknown function (DUF1730) AYR67_10390 PF04055 Radical SAM superfamily AYR67_10390 PF06968 Biotin and Thiamin Synthesis associated domain AYR67_10405 PF16970 Type-1 fimbrial protein, A AYR67_10410 PF02753 Pili assembly chaperone PapD, C-terminal domain AYR67_10410 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYR67_10415 PF13954 PapC N-terminal domain AYR67_10415 PF00577 Outer membrane usher protein AYR67_10415 PF13953 PapC C-terminal domain AYR67_10435 PF00892 EamA-like transporter family AYR67_10445 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYR67_10455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_10455 PF03466 LysR substrate binding domain AYR67_10475 PF00440 Bacterial regulatory proteins, tetR family AYR67_10485 PF01709 Transcriptional regulator AYR67_10490 PF01037 Lrp/AsnC ligand binding domain AYR67_10500 PF00005 ABC transporter AYR67_10505 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_10510 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_10525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_10525 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR67_10535 PF00296 Luciferase-like monooxygenase AYR67_10540 PF03180 NLPA lipoprotein AYR67_10545 PF03180 NLPA lipoprotein AYR67_10550 PF00005 ABC transporter AYR67_10550 PF09383 NIL domain AYR67_10555 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_10560 PF06071 Protein of unknown function (DUF933) AYR67_10560 PF01926 50S ribosome-binding GTPase AYR67_10585 PF03591 AzlC protein AYR67_10590 PF05437 Branched-chain amino acid transport protein (AzlD) AYR67_10600 PF02222 ATP-grasp domain AYR67_10605 PF08335 GlnD PII-uridylyltransferase AYR67_10605 PF01909 Nucleotidyltransferase domain AYR67_10605 PF01966 HD domain AYR67_10610 PF00155 Aminotransferase class I and II AYR67_10620 PF12833 Helix-turn-helix domain AYR67_10620 PF12852 Cupin AYR67_10625 PF00255 Glutathione peroxidase AYR67_10630 PF01641 SelR domain AYR67_10635 PF00155 Aminotransferase class I and II AYR67_10640 PF00375 Sodium:dicarboxylate symporter family AYR67_10645 PF17763 Glutaminase/Asparaginase C-terminal domain AYR67_10645 PF00710 Asparaginase, N-terminal AYR67_10650 PF01336 OB-fold nucleic acid binding domain AYR67_10650 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYR67_10650 PF02811 PHP domain AYR67_10650 PF14579 Helix-hairpin-helix motif AYR67_10650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYR67_10655 PF00588 SpoU rRNA Methylase family AYR67_10660 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_10675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_10675 PF13192 Thioredoxin domain AYR67_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_10690 PF03466 LysR substrate binding domain AYR67_10695 PF01758 Sodium Bile acid symporter family AYR67_10700 PF01022 Bacterial regulatory protein, arsR family AYR67_10705 PF03960 ArsC family AYR67_10715 PF01979 Amidohydrolase family AYR67_10715 PF13382 Adenine deaminase C-terminal domain AYR67_10725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_10725 PF03466 LysR substrate binding domain AYR67_10735 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYR67_10740 PF01177 Asp/Glu/Hydantoin racemase AYR67_10745 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AYR67_10750 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_10755 PF00005 ABC transporter AYR67_10760 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYR67_10770 PF00083 Sugar (and other) transporter AYR67_10775 PF00296 Luciferase-like monooxygenase AYR67_10780 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_10780 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR67_10780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_10790 PF01654 Cytochrome bd terminal oxidase subunit I AYR67_10795 PF02322 Cytochrome bd terminal oxidase subunit II AYR67_10805 PF00155 Aminotransferase class I and II AYR67_10805 PF00392 Bacterial regulatory proteins, gntR family AYR67_10810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_10810 PF03466 LysR substrate binding domain AYR67_10825 PF00698 Acyl transferase domain AYR67_10830 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AYR67_10840 PF01039 Carboxyl transferase domain AYR67_10845 PF06857 Malonate decarboxylase delta subunit (MdcD) AYR67_10850 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AYR67_10855 PF16957 Malonate decarboxylase, alpha subunit, transporter AYR67_10860 PF07690 Major Facilitator Superfamily AYR67_10875 PF00392 Bacterial regulatory proteins, gntR family AYR67_10875 PF00155 Aminotransferase class I and II AYR67_10880 PF04172 LrgB-like family AYR67_10885 PF03788 LrgA family AYR67_10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_10890 PF03466 LysR substrate binding domain AYR67_10895 PF14834 Glutathione S-transferase, C-terminal domain AYR67_10895 PF02798 Glutathione S-transferase, N-terminal domain AYR67_10900 PF02798 Glutathione S-transferase, N-terminal domain AYR67_10905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_10905 PF03466 LysR substrate binding domain AYR67_10915 PF00581 Rhodanese-like domain AYR67_10920 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_10930 PF00266 Aminotransferase class-V AYR67_10935 PF01810 LysE type translocator AYR67_10940 PF03466 LysR substrate binding domain AYR67_10940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_10945 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR67_10950 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR67_10955 PF00005 ABC transporter AYR67_10960 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_10965 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_10975 PF00072 Response regulator receiver domain AYR67_10980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_10980 PF00512 His Kinase A (phospho-acceptor) domain AYR67_10980 PF09308 LuxQ, periplasmic AYR67_10980 PF00072 Response regulator receiver domain AYR67_10990 PF13404 AsnC-type helix-turn-helix domain AYR67_10990 PF01037 Lrp/AsnC ligand binding domain AYR67_11000 PF00717 Peptidase S24-like AYR67_11025 PF06628 Catalase-related immune-responsive AYR67_11025 PF18011 C-terminal domain found in long catalases AYR67_11025 PF00199 Catalase AYR67_11035 PF00994 Probable molybdopterin binding domain AYR67_11035 PF02464 Competence-damaged protein AYR67_11035 PF18146 Damage-inducible protein CinA KH domain AYR67_11070 PF03466 LysR substrate binding domain AYR67_11070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_11090 PF00501 AMP-binding enzyme AYR67_11090 PF13193 AMP-binding enzyme C-terminal domain AYR67_11095 PF00440 Bacterial regulatory proteins, tetR family AYR67_11100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_11100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_11100 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_11105 PF01039 Carboxyl transferase domain AYR67_11110 PF00378 Enoyl-CoA hydratase/isomerase AYR67_11115 PF00289 Biotin carboxylase, N-terminal domain AYR67_11115 PF02785 Biotin carboxylase C-terminal domain AYR67_11115 PF00364 Biotin-requiring enzyme AYR67_11115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR67_11120 PF00682 HMGL-like AYR67_11125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_11125 PF03466 LysR substrate binding domain AYR67_11140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_11140 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYR67_11140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_11140 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_11150 PF07690 Major Facilitator Superfamily AYR67_11160 PF01144 Coenzyme A transferase AYR67_11165 PF01144 Coenzyme A transferase AYR67_11170 PF07690 Major Facilitator Superfamily AYR67_11175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_11175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_11175 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_11180 PF00378 Enoyl-CoA hydratase/isomerase AYR67_11190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR67_11190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR67_11190 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AYR67_11195 PF00108 Thiolase, N-terminal domain AYR67_11195 PF02803 Thiolase, C-terminal domain AYR67_11200 PF09339 IclR helix-turn-helix domain AYR67_11205 PF07690 Major Facilitator Superfamily AYR67_11210 PF03060 Nitronate monooxygenase AYR67_11215 PF00378 Enoyl-CoA hydratase/isomerase AYR67_11220 PF09339 IclR helix-turn-helix domain AYR67_11225 PF02515 CoA-transferase family III AYR67_11230 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_11230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_11230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_11235 PF07690 Major Facilitator Superfamily AYR67_11240 PF13419 Haloacid dehalogenase-like hydrolase AYR67_11245 PF00266 Aminotransferase class-V AYR67_11250 PF01266 FAD dependent oxidoreductase AYR67_11255 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_11260 PF00005 ABC transporter AYR67_11260 PF08402 TOBE domain AYR67_11270 PF07702 UTRA domain AYR67_11270 PF00392 Bacterial regulatory proteins, gntR family AYR67_11275 PF01494 FAD binding domain AYR67_11280 PF01614 Bacterial transcriptional regulator AYR67_11280 PF09339 IclR helix-turn-helix domain AYR67_11285 PF02525 Flavodoxin-like fold AYR67_11290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_11290 PF03466 LysR substrate binding domain AYR67_11295 PF02627 Carboxymuconolactone decarboxylase family AYR67_11300 PF00171 Aldehyde dehydrogenase family AYR67_11310 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYR67_11315 PF00171 Aldehyde dehydrogenase family AYR67_11320 PF00296 Luciferase-like monooxygenase AYR67_11325 PF01613 Flavin reductase like domain AYR67_11330 PF12697 Alpha/beta hydrolase family AYR67_11350 PF01292 Prokaryotic cytochrome b561 AYR67_11355 PF00199 Catalase AYR67_11390 PF03061 Thioesterase superfamily AYR67_11395 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_11400 PF08223 PaaX-like protein C-terminal domain AYR67_11400 PF07848 PaaX-like protein AYR67_11405 PF14535 AMP-binding enzyme C-terminal domain AYR67_11405 PF00501 AMP-binding enzyme AYR67_11410 PF00108 Thiolase, N-terminal domain AYR67_11410 PF02803 Thiolase, C-terminal domain AYR67_11415 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR67_11415 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AYR67_11415 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR67_11420 PF00378 Enoyl-CoA hydratase/isomerase AYR67_11425 PF00378 Enoyl-CoA hydratase/isomerase AYR67_11430 PF00175 Oxidoreductase NAD-binding domain AYR67_11430 PF00970 Oxidoreductase FAD-binding domain AYR67_11430 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR67_11435 PF01883 Iron-sulfur cluster assembly protein AYR67_11440 PF05138 Phenylacetic acid catabolic protein AYR67_11445 PF06243 Phenylacetic acid degradation B AYR67_11450 PF05138 Phenylacetic acid catabolic protein AYR67_11455 PF00171 Aldehyde dehydrogenase family AYR67_11455 PF01575 MaoC like domain AYR67_11460 PF03315 Serine dehydratase beta chain AYR67_11460 PF03313 Serine dehydratase alpha chain AYR67_11465 PF13520 Amino acid permease AYR67_11470 PF00171 Aldehyde dehydrogenase family AYR67_11475 PF00083 Sugar (and other) transporter AYR67_11485 PF04324 BFD-like [2Fe-2S] binding domain AYR67_11485 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_11495 PF01266 FAD dependent oxidoreductase AYR67_11500 PF05544 Proline racemase AYR67_11505 PF00392 Bacterial regulatory proteins, gntR family AYR67_11515 PF00701 Dihydrodipicolinate synthetase family AYR67_11525 PF00376 MerR family regulatory protein AYR67_11525 PF09278 MerR, DNA binding AYR67_11545 PF02677 Epoxyqueuosine reductase QueH AYR67_11560 PF07690 Major Facilitator Superfamily AYR67_11565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYR67_11575 PF03466 LysR substrate binding domain AYR67_11575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_11605 PF10431 C-terminal, D2-small domain, of ClpB protein AYR67_11605 PF17871 AAA lid domain AYR67_11605 PF07724 AAA domain (Cdc48 subfamily) AYR67_11605 PF00004 ATPase family associated with various cellular activities (AAA) AYR67_11610 PF13737 Transposase DDE domain AYR67_11620 PF00691 OmpA family AYR67_11620 PF01389 OmpA-like transmembrane domain AYR67_11685 PF00005 ABC transporter AYR67_11690 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYR67_11695 PF01425 Amidase AYR67_11700 PF08753 NikR C terminal nickel binding domain AYR67_11700 PF01402 Ribbon-helix-helix protein, copG family AYR67_11715 PF01638 HxlR-like helix-turn-helix AYR67_11720 PF02525 Flavodoxin-like fold AYR67_11725 PF02785 Biotin carboxylase C-terminal domain AYR67_11725 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR67_11725 PF00289 Biotin carboxylase, N-terminal domain AYR67_11740 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_11740 PF13823 Alcohol dehydrogenase GroES-associated AYR67_11740 PF00107 Zinc-binding dehydrogenase AYR67_11750 PF00440 Bacterial regulatory proteins, tetR family AYR67_11775 PF00654 Voltage gated chloride channel AYR67_11780 PF02785 Biotin carboxylase C-terminal domain AYR67_11780 PF00289 Biotin carboxylase, N-terminal domain AYR67_11780 PF00364 Biotin-requiring enzyme AYR67_11780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYR67_11790 PF07286 Protein of unknown function (DUF1445) AYR67_11795 PF03746 LamB/YcsF family AYR67_11800 PF01566 Natural resistance-associated macrophage protein AYR67_11805 PF03466 LysR substrate binding domain AYR67_11805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_11820 PF14220 Domain of unknown function (DUF4329) AYR67_11820 PF05593 RHS Repeat AYR67_11820 PF03527 RHS protein AYR67_11825 PF16671 Actin cross-linking domain AYR67_11825 PF04717 Type VI secretion system, phage-baseplate injector AYR67_11835 PF13419 Haloacid dehalogenase-like hydrolase AYR67_11850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR67_11850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR67_11870 PF07690 Major Facilitator Superfamily AYR67_11880 PF03279 Bacterial lipid A biosynthesis acyltransferase AYR67_11885 PF00563 EAL domain AYR67_11885 PF00990 Diguanylate cyclase, GGDEF domain AYR67_11885 PF03707 Bacterial signalling protein N terminal repeat AYR67_11890 PF00892 EamA-like transporter family AYR67_11895 PF01037 Lrp/AsnC ligand binding domain AYR67_11900 PF05188 MutS domain II AYR67_11900 PF01624 MutS domain I AYR67_11900 PF05192 MutS domain III AYR67_11900 PF05190 MutS family domain IV AYR67_11900 PF00488 MutS domain V AYR67_11910 PF11953 Domain of unknown function (DUF3470) AYR67_11910 PF00037 4Fe-4S binding domain AYR67_11920 PF01596 O-methyltransferase AYR67_11930 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_11935 PF01205 Uncharacterized protein family UPF0029 AYR67_11945 PF00005 ABC transporter AYR67_11945 PF03412 Peptidase C39 family AYR67_11945 PF00664 ABC transporter transmembrane region AYR67_11950 PF02321 Outer membrane efflux protein AYR67_11955 PF00005 ABC transporter AYR67_11955 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYR67_11960 PF03968 OstA-like protein AYR67_11975 PF00571 CBS domain AYR67_11975 PF01380 SIS domain AYR67_11980 PF09190 DALR domain AYR67_11980 PF01406 tRNA synthetases class I (C) catalytic domain AYR67_12010 PF01638 HxlR-like helix-turn-helix AYR67_12015 PF07690 Major Facilitator Superfamily AYR67_12035 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYR67_12035 PF03807 NADP oxidoreductase coenzyme F420-dependent AYR67_12045 PF00313 'Cold-shock' DNA-binding domain AYR67_12050 PF01810 LysE type translocator AYR67_12085 PF13742 OB-fold nucleic acid binding domain AYR67_12085 PF02601 Exonuclease VII, large subunit AYR67_12120 PF00376 MerR family regulatory protein AYR67_12120 PF09278 MerR, DNA binding AYR67_12125 PF00403 Heavy-metal-associated domain AYR67_12130 PF00403 Heavy-metal-associated domain AYR67_12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_12135 PF03466 LysR substrate binding domain AYR67_12140 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR67_12140 PF00355 Rieske [2Fe-2S] domain AYR67_12145 PF00866 Ring hydroxylating beta subunit AYR67_12150 PF00970 Oxidoreductase FAD-binding domain AYR67_12150 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR67_12150 PF00175 Oxidoreductase NAD-binding domain AYR67_12155 PF00106 short chain dehydrogenase AYR67_12160 PF03594 Benzoate membrane transport protein AYR67_12165 PF07690 Major Facilitator Superfamily AYR67_12175 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYR67_12175 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYR67_12180 PF00270 DEAD/DEAH box helicase AYR67_12180 PF11898 Domain of unknown function (DUF3418) AYR67_12180 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AYR67_12180 PF00271 Helicase conserved C-terminal domain AYR67_12180 PF04408 Helicase associated domain (HA2) AYR67_12185 PF00578 AhpC/TSA family AYR67_12185 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYR67_12205 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_12205 PF13192 Thioredoxin domain AYR67_12215 PF00043 Glutathione S-transferase, C-terminal domain AYR67_12215 PF02798 Glutathione S-transferase, N-terminal domain AYR67_12225 PF02390 Putative methyltransferase AYR67_12230 PF13417 Glutathione S-transferase, N-terminal domain AYR67_12230 PF00043 Glutathione S-transferase, C-terminal domain AYR67_12240 PF13488 Glycine zipper AYR67_12240 PF00691 OmpA family AYR67_12245 PF01979 Amidohydrolase family AYR67_12250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYR67_12250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYR67_12260 PF10672 S-adenosylmethionine-dependent methyltransferase AYR67_12260 PF02926 THUMP domain AYR67_12260 PF01170 Putative RNA methylase family UPF0020 AYR67_12275 PF00004 ATPase family associated with various cellular activities (AAA) AYR67_12275 PF02861 Clp amino terminal domain, pathogenicity island component AYR67_12275 PF10431 C-terminal, D2-small domain, of ClpB protein AYR67_12275 PF17871 AAA lid domain AYR67_12275 PF07724 AAA domain (Cdc48 subfamily) AYR67_12290 PF02566 OsmC-like protein AYR67_12295 PF13545 Crp-like helix-turn-helix domain AYR67_12295 PF00027 Cyclic nucleotide-binding domain AYR67_12310 PF00248 Aldo/keto reductase family AYR67_12325 PF00709 Adenylosuccinate synthetase AYR67_12330 PF13393 Histidyl-tRNA synthetase AYR67_12335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYR67_12335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYR67_12340 PF02272 DHHA1 domain AYR67_12340 PF01411 tRNA synthetases class II (A) AYR67_12340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYR67_12345 PF01842 ACT domain AYR67_12345 PF00696 Amino acid kinase family AYR67_12345 PF13840 ACT domain AYR67_12350 PF02599 Global regulator protein family AYR67_12355 PF01351 Ribonuclease HII AYR67_12365 PF01292 Prokaryotic cytochrome b561 AYR67_12370 PF00962 Adenosine/AMP deaminase AYR67_12375 PF00860 Permease family AYR67_12385 PF00743 Flavin-binding monooxygenase-like AYR67_12390 PF00106 short chain dehydrogenase AYR67_12400 PF17954 Quercetinase C-terminal cupin domain AYR67_12400 PF02678 Pirin AYR67_12405 PF00440 Bacterial regulatory proteins, tetR family AYR67_12405 PF17932 Tetracyclin repressor-like, C-terminal domain AYR67_12410 PF13610 DDE domain AYR67_12415 PF01636 Phosphotransferase enzyme family AYR67_12425 PF13610 DDE domain AYR67_12430 PF02796 Helix-turn-helix domain of resolvase AYR67_12430 PF00239 Resolvase, N terminal domain AYR67_12435 PF13700 Domain of unknown function (DUF4158) AYR67_12435 PF01526 Tn3 transposase DDE domain AYR67_12440 PF13610 DDE domain AYR67_12450 PF02796 Helix-turn-helix domain of resolvase AYR67_12450 PF00239 Resolvase, N terminal domain AYR67_12455 PF13610 DDE domain AYR67_12470 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_12470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR67_12475 PF00764 Arginosuccinate synthase AYR67_12480 PF01590 GAF domain AYR67_12480 PF00990 Diguanylate cyclase, GGDEF domain AYR67_12480 PF00360 Phytochrome region AYR67_12480 PF00563 EAL domain AYR67_12485 PF01979 Amidohydrolase family AYR67_12490 PF00929 Exonuclease AYR67_12500 PF00593 TonB dependent receptor AYR67_12500 PF07715 TonB-dependent Receptor Plug Domain AYR67_12505 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_12505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYR67_12510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYR67_12510 PF00005 ABC transporter AYR67_12515 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_12515 PF12911 N-terminal TM domain of oligopeptide transport permease C AYR67_12520 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_12525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYR67_12530 PF01476 LysM domain AYR67_12530 PF01464 Transglycosylase SLT domain AYR67_12530 PF01476 LysM domain AYR67_12530 PF01464 Transglycosylase SLT domain AYR67_12535 PF00929 Exonuclease AYR67_12545 PF09297 NADH pyrophosphatase zinc ribbon domain AYR67_12545 PF00293 NUDIX domain AYR67_12555 PF04972 BON domain AYR67_12560 PF02021 Uncharacterised protein family UPF0102 AYR67_12565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYR67_12575 PF03466 LysR substrate binding domain AYR67_12575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_12580 PF01810 LysE type translocator AYR67_12590 PF13411 MerR HTH family regulatory protein AYR67_12600 PF01494 FAD binding domain AYR67_12605 PF01494 FAD binding domain AYR67_12610 PF00557 Metallopeptidase family M24 AYR67_12610 PF05195 Aminopeptidase P, N-terminal domain AYR67_12745 PF04860 Phage portal protein AYR67_12835 PF03796 DnaB-like helicase C terminal domain AYR67_12835 PF00772 DnaB-like helicase N terminal domain AYR67_12855 PF01726 LexA DNA binding domain AYR67_12855 PF00717 Peptidase S24-like AYR67_12910 PF08019 Phosphoethanolamine transferase EptA/EptB AYR67_12910 PF00884 Sulfatase AYR67_12955 PF08525 Opacity-associated protein A N-terminal motif AYR67_12955 PF01476 LysM domain AYR67_12955 PF01551 Peptidase family M23 AYR67_13270 PF01812 5-formyltetrahydrofolate cyclo-ligase family AYR67_13280 PF05662 Coiled stalk of trimeric autotransporter adhesin AYR67_13280 PF05658 Head domain of trimeric autotransporter adhesin AYR67_13280 PF03895 YadA-like membrane anchor domain AYR67_13280 PF13018 Extended Signal Peptide of Type V secretion system AYR67_13285 PF00004 ATPase family associated with various cellular activities (AAA) AYR67_13285 PF05362 Lon protease (S16) C-terminal proteolytic domain AYR67_13285 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYR67_13290 PF02590 Predicted SPOUT methyltransferase AYR67_13295 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AYR67_13305 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYR67_13305 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYR67_13310 PF04060 Putative Fe-S cluster AYR67_13315 PF00730 HhH-GPD superfamily base excision DNA repair protein AYR67_13315 PF00633 Helix-hairpin-helix motif AYR67_13315 PF10576 Iron-sulfur binding domain of endonuclease III AYR67_13320 PF05191 Adenylate kinase, active site lid AYR67_13335 PF00905 Penicillin binding protein transpeptidase domain AYR67_13335 PF03717 Penicillin-binding Protein dimerisation domain AYR67_13350 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYR67_13355 PF01730 UreF AYR67_13360 PF05194 UreE urease accessory protein, C-terminal domain AYR67_13360 PF02814 UreE urease accessory protein, N-terminal domain AYR67_13365 PF00449 Urease alpha-subunit, N-terminal domain AYR67_13365 PF01979 Amidohydrolase family AYR67_13370 PF00699 Urease beta subunit AYR67_13375 PF00547 Urease, gamma subunit AYR67_13380 PF01774 UreD urease accessory protein AYR67_13395 PF00463 Isocitrate lyase family AYR67_13400 PF03466 LysR substrate binding domain AYR67_13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_13405 PF03471 Transporter associated domain AYR67_13405 PF01595 Cyclin M transmembrane N-terminal domain AYR67_13405 PF00571 CBS domain AYR67_13415 PF03600 Citrate transporter AYR67_13430 PF00009 Elongation factor Tu GTP binding domain AYR67_13435 PF01507 Phosphoadenosine phosphosulfate reductase family AYR67_13450 PF14052 Capsule assembly protein Wzi AYR67_13455 PF00152 tRNA synthetases class II (D, K and N) AYR67_13455 PF01336 OB-fold nucleic acid binding domain AYR67_13470 PF00301 Rubredoxin AYR67_13475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_13475 PF18113 Rubredoxin binding C-terminal domain AYR67_13480 PF00561 alpha/beta hydrolase fold AYR67_13485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_13485 PF03466 LysR substrate binding domain AYR67_13495 PF13090 Polyphosphate kinase C-terminal domain 2 AYR67_13495 PF02503 Polyphosphate kinase middle domain AYR67_13495 PF17941 Polyphosphate kinase C-terminal domain 1 AYR67_13495 PF13089 Polyphosphate kinase N-terminal domain AYR67_13500 PF00912 Transglycosylase AYR67_13505 PF01694 Rhomboid family AYR67_13515 PF00005 ABC transporter AYR67_13520 PF13472 GDSL-like Lipase/Acylhydrolase family AYR67_13525 PF00484 Carbonic anhydrase AYR67_13530 PF00561 alpha/beta hydrolase fold AYR67_13540 PF07715 TonB-dependent Receptor Plug Domain AYR67_13540 PF00593 TonB dependent receptor AYR67_13545 PF01521 Iron-sulphur cluster biosynthesis AYR67_13545 PF01106 NifU-like domain AYR67_13555 PF00884 Sulfatase AYR67_13560 PF03781 Sulfatase-modifying factor enzyme 1 AYR67_13575 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_13580 PF01384 Phosphate transporter family AYR67_13645 PF13356 Arm DNA-binding domain AYR67_13645 PF00589 Phage integrase family AYR67_13660 PF07690 Major Facilitator Superfamily AYR67_13665 PF13533 Biotin-lipoyl like AYR67_13670 PF03061 Thioesterase superfamily AYR67_13675 PF00490 Delta-aminolevulinic acid dehydratase AYR67_13680 PF01266 FAD dependent oxidoreductase AYR67_13685 PF08338 Domain of unknown function (DUF1731) AYR67_13685 PF01370 NAD dependent epimerase/dehydratase family AYR67_13705 PF12320 Type 5 capsule protein repressor C-terminal domain AYR67_13705 PF00149 Calcineurin-like phosphoesterase AYR67_13715 PF01168 Alanine racemase, N-terminal domain AYR67_13720 PF00437 Type II/IV secretion system protein AYR67_13725 PF00437 Type II/IV secretion system protein AYR67_13730 PF01475 Ferric uptake regulator family AYR67_13735 PF04355 SmpA / OmlA family AYR67_13740 PF03658 RnfH family Ubiquitin AYR67_13755 PF01814 Hemerythrin HHE cation binding domain AYR67_13760 PF13230 Glutamine amidotransferases class-II AYR67_13770 PF00696 Amino acid kinase family AYR67_13775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR67_13775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR67_13775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR67_13775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR67_13780 PF00692 dUTPase AYR67_13785 PF13361 UvrD-like helicase C-terminal domain AYR67_13785 PF00580 UvrD/REP helicase N-terminal domain AYR67_13790 PF13488 Glycine zipper AYR67_13790 PF00691 OmpA family AYR67_13795 PF01553 Acyltransferase AYR67_13805 PF03775 Septum formation inhibitor MinC, C-terminal domain AYR67_13810 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYR67_13815 PF03776 Septum formation topological specificity factor MinE AYR67_13830 PF01810 LysE type translocator AYR67_13835 PF17854 FtsK alpha domain AYR67_13835 PF09397 Ftsk gamma domain AYR67_13835 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AYR67_13835 PF01580 FtsK/SpoIIIE family AYR67_13840 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYR67_13845 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AYR67_13850 PF04376 Arginine-tRNA-protein transferase, N terminus AYR67_13850 PF04377 Arginine-tRNA-protein transferase, C terminus AYR67_13855 PF00583 Acetyltransferase (GNAT) family AYR67_13870 PF03143 Elongation factor Tu C-terminal domain AYR67_13870 PF03144 Elongation factor Tu domain 2 AYR67_13870 PF00009 Elongation factor Tu GTP binding domain AYR67_13875 PF00009 Elongation factor Tu GTP binding domain AYR67_13875 PF03764 Elongation factor G, domain IV AYR67_13875 PF14492 Elongation Factor G, domain II AYR67_13875 PF00679 Elongation factor G C-terminus AYR67_13875 PF03144 Elongation factor Tu domain 2 AYR67_13880 PF00177 Ribosomal protein S7p/S5e AYR67_13885 PF00164 Ribosomal protein S12/S23 AYR67_13895 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR67_13895 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR67_13905 PF05726 Pirin C-terminal cupin domain AYR67_13905 PF02678 Pirin AYR67_13915 PF00795 Carbon-nitrogen hydrolase AYR67_13915 PF02540 NAD synthase AYR67_13930 PF00175 Oxidoreductase NAD-binding domain AYR67_13930 PF00111 2Fe-2S iron-sulfur cluster binding domain AYR67_13930 PF00970 Oxidoreductase FAD-binding domain AYR67_13935 PF00171 Aldehyde dehydrogenase family AYR67_13940 PF00355 Rieske [2Fe-2S] domain AYR67_13940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYR67_13945 PF07859 alpha/beta hydrolase fold AYR67_13950 PF02028 BCCT, betaine/carnitine/choline family transporter AYR67_13955 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR67_13960 PF03466 LysR substrate binding domain AYR67_13960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_13980 PF00037 4Fe-4S binding domain AYR67_13985 PF01467 Cytidylyltransferase-like AYR67_13990 PF01668 SmpB protein AYR67_13995 PF03358 NADPH-dependent FMN reductase AYR67_14005 PF01479 S4 domain AYR67_14005 PF00849 RNA pseudouridylate synthase AYR67_14010 PF13525 Outer membrane lipoprotein AYR67_14015 PF10410 DnaB-helicase binding domain of primase AYR67_14015 PF01807 CHC2 zinc finger AYR67_14015 PF08275 DNA primase catalytic core, N-terminal domain AYR67_14015 PF08278 DNA primase DnaG DnaB-binding AYR67_14020 PF01488 Shikimate / quinate 5-dehydrogenase AYR67_14020 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AYR67_14020 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AYR67_14030 PF03550 Outer membrane lipoprotein LolB AYR67_14035 PF08544 GHMP kinases C terminal AYR67_14035 PF00288 GHMP kinases N terminal domain AYR67_14060 PF14572 Phosphoribosyl synthetase-associated domain AYR67_14060 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYR67_14065 PF01386 Ribosomal L25p family AYR67_14070 PF01195 Peptidyl-tRNA hydrolase AYR67_14075 PF02261 Aspartate decarboxylase AYR67_14090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYR67_14100 PF03070 TENA/THI-4/PQQC family AYR67_14100 PF08543 Phosphomethylpyrimidine kinase AYR67_14100 PF02581 Thiamine monophosphate synthase AYR67_14105 PF04972 BON domain AYR67_14105 PF01476 LysM domain AYR67_14110 PF00550 Phosphopantetheine attachment site AYR67_14120 PF00698 Acyl transferase domain AYR67_14125 PF01783 Ribosomal L32p protein family AYR67_14130 PF02620 Large ribosomal RNA subunit accumulation protein YceD AYR67_14135 PF04315 Elongation factor P hydroxylase AYR67_14140 PF01300 Telomere recombination AYR67_14145 PF02616 Segregation and condensation protein ScpA AYR67_14150 PF04079 Segregation and condensation complex subunit ScpB AYR67_14155 PF00849 RNA pseudouridylate synthase AYR67_14155 PF01479 S4 domain AYR67_14170 PF00155 Aminotransferase class I and II AYR67_14175 PF04055 Radical SAM superfamily AYR67_14175 PF00202 Aminotransferase class-III AYR67_14175 PF06968 Biotin and Thiamin Synthesis associated domain AYR67_14180 PF12697 Alpha/beta hydrolase family AYR67_14180 PF08241 Methyltransferase domain AYR67_14185 PF02358 Trehalose-phosphatase AYR67_14190 PF00982 Glycosyltransferase family 20 AYR67_14195 PF07690 Major Facilitator Superfamily AYR67_14200 PF00210 Ferritin-like domain AYR67_14205 PF00533 BRCA1 C Terminus (BRCT) domain AYR67_14205 PF12826 Helix-hairpin-helix motif AYR67_14205 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYR67_14205 PF01653 NAD-dependent DNA ligase adenylation domain AYR67_14205 PF03120 NAD-dependent DNA ligase OB-fold domain AYR67_14215 PF06470 SMC proteins Flexible Hinge Domain AYR67_14215 PF02463 RecF/RecN/SMC N terminal domain AYR67_14225 PF01925 Sulfite exporter TauE/SafE AYR67_14235 PF03309 Type III pantothenate kinase AYR67_14240 PF00448 SRP54-type protein, GTPase domain AYR67_14240 PF02978 Signal peptide binding domain AYR67_14240 PF02881 SRP54-type protein, helical bundle domain AYR67_14250 PF01207 Dihydrouridine synthase (Dus) AYR67_14280 PF00692 dUTPase AYR67_14295 PF01048 Phosphorylase superfamily AYR67_14300 PF10609 NUBPL iron-transfer P-loop NTPase AYR67_14310 PF01588 Putative tRNA binding domain AYR67_14310 PF09334 tRNA synthetases class I (M) AYR67_14335 PF13533 Biotin-lipoyl like AYR67_14340 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_14355 PF05552 Conserved TM helix AYR67_14370 PF00175 Oxidoreductase NAD-binding domain AYR67_14370 PF00970 Oxidoreductase FAD-binding domain AYR67_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_14375 PF03466 LysR substrate binding domain AYR67_14380 PF00313 'Cold-shock' DNA-binding domain AYR67_14390 PF00361 Proton-conducting membrane transporter AYR67_14395 PF00361 Proton-conducting membrane transporter AYR67_14400 PF00361 Proton-conducting membrane transporter AYR67_14400 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYR67_14405 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYR67_14410 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AYR67_14415 PF12838 4Fe-4S dicluster domain AYR67_14420 PF00146 NADH dehydrogenase AYR67_14425 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYR67_14425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYR67_14425 PF00384 Molybdopterin oxidoreductase AYR67_14430 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYR67_14430 PF10531 SLBB domain AYR67_14430 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYR67_14440 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AYR67_14440 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AYR67_14445 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYR67_14450 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AYR67_14455 PF17151 Periplasmic sensor domain AYR67_14455 PF00990 Diguanylate cyclase, GGDEF domain AYR67_14465 PF00512 His Kinase A (phospho-acceptor) domain AYR67_14465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_14465 PF00672 HAMP domain AYR67_14470 PF00072 Response regulator receiver domain AYR67_14470 PF00486 Transcriptional regulatory protein, C terminal AYR67_14480 PF03477 ATP cone domain AYR67_14480 PF02867 Ribonucleotide reductase, barrel domain AYR67_14480 PF00317 Ribonucleotide reductase, all-alpha domain AYR67_14490 PF00268 Ribonucleotide reductase, small chain AYR67_14500 PF13756 Stimulus-sensing domain AYR67_14500 PF00512 His Kinase A (phospho-acceptor) domain AYR67_14500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_14500 PF00672 HAMP domain AYR67_14500 PF13755 Sensor N-terminal transmembrane domain AYR67_14570 PF01011 PQQ enzyme repeat AYR67_14570 PF13360 PQQ-like domain AYR67_14590 PF02567 Phenazine biosynthesis-like protein AYR67_14615 PF01613 Flavin reductase like domain AYR67_14620 PF08267 Cobalamin-independent synthase, N-terminal domain AYR67_14620 PF01717 Cobalamin-independent synthase, Catalytic domain AYR67_14630 PF03466 LysR substrate binding domain AYR67_14630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_14635 PF01810 LysE type translocator AYR67_14655 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AYR67_14655 PF12833 Helix-turn-helix domain AYR67_14660 PF01546 Peptidase family M20/M25/M40 AYR67_14660 PF07687 Peptidase dimerisation domain AYR67_14670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_14670 PF03466 LysR substrate binding domain AYR67_14675 PF07690 Major Facilitator Superfamily AYR67_14685 PF03466 LysR substrate binding domain AYR67_14685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_14690 PF14537 Cytochrome c3 AYR67_14690 PF00890 FAD binding domain AYR67_14700 PF02515 CoA-transferase family III AYR67_14705 PF07690 Major Facilitator Superfamily AYR67_14710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_14710 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_14710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_14715 PF03466 LysR substrate binding domain AYR67_14720 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_14720 PF00107 Zinc-binding dehydrogenase AYR67_14725 PF00962 Adenosine/AMP deaminase AYR67_14750 PF02445 Quinolinate synthetase A protein AYR67_14755 PF01960 ArgJ family AYR67_14760 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYR67_14760 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR67_14765 PF00893 Small Multidrug Resistance protein AYR67_14775 PF05275 Copper resistance protein B precursor (CopB) AYR67_14780 PF00394 Multicopper oxidase AYR67_14780 PF07731 Multicopper oxidase AYR67_14780 PF07732 Multicopper oxidase AYR67_14795 PF00834 Ribulose-phosphate 3 epimerase family AYR67_14805 PF00756 Putative esterase AYR67_14815 PF04445 Putative SAM-dependent methyltransferase AYR67_14820 PF00814 Glycoprotease family AYR67_14825 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_14830 PF00293 NUDIX domain AYR67_14875 PF00425 chorismate binding enzyme AYR67_14875 PF04715 Anthranilate synthase component I, N terminal region AYR67_14880 PF00155 Aminotransferase class I and II AYR67_14885 PF00815 Histidinol dehydrogenase AYR67_14890 PF01634 ATP phosphoribosyltransferase AYR67_14895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYR67_14900 PF01722 BolA-like protein AYR67_14905 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYR67_14910 PF00309 Sigma-54 factor, Activator interacting domain (AID) AYR67_14910 PF04963 Sigma-54 factor, core binding domain AYR67_14910 PF04552 Sigma-54, DNA binding domain AYR67_14955 PF00795 Carbon-nitrogen hydrolase AYR67_14965 PF01047 MarR family AYR67_14970 PF02566 OsmC-like protein AYR67_14975 PF00437 Type II/IV secretion system protein AYR67_15010 PF01612 3'-5' exonuclease AYR67_15010 PF01367 5'-3' exonuclease, C-terminal SAM fold AYR67_15010 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYR67_15010 PF00476 DNA polymerase family A AYR67_15015 PF02325 YGGT family AYR67_15020 PF03807 NADP oxidoreductase coenzyme F420-dependent AYR67_15020 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYR67_15025 PF01171 PP-loop family AYR67_15025 PF09179 TilS substrate binding domain AYR67_15025 PF11734 TilS substrate C-terminal domain AYR67_15030 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AYR67_15035 PF02541 Ppx/GppA phosphatase family AYR67_15040 PF00085 Thioredoxin AYR67_15045 PF07497 Rho termination factor, RNA-binding domain AYR67_15045 PF07498 Rho termination factor, N-terminal domain AYR67_15045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR67_15055 PF00216 Bacterial DNA-binding protein AYR67_15060 PF03483 B3/4 domain AYR67_15060 PF03484 tRNA synthetase B5 domain AYR67_15060 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AYR67_15060 PF01588 Putative tRNA binding domain AYR67_15060 PF03147 Ferredoxin-fold anticodon binding domain AYR67_15065 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYR67_15065 PF01409 tRNA synthetases class II core domain (F) AYR67_15085 PF00453 Ribosomal protein L20 AYR67_15090 PF01632 Ribosomal protein L35 AYR67_15095 PF07690 Major Facilitator Superfamily AYR67_15100 PF09335 SNARE associated Golgi protein AYR67_15105 PF02798 Glutathione S-transferase, N-terminal domain AYR67_15105 PF00043 Glutathione S-transferase, C-terminal domain AYR67_15110 PF05198 Translation initiation factor IF-3, N-terminal domain AYR67_15110 PF00707 Translation initiation factor IF-3, C-terminal domain AYR67_15115 PF02824 TGS domain AYR67_15115 PF03129 Anticodon binding domain AYR67_15115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYR67_15115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYR67_15120 PF13193 AMP-binding enzyme C-terminal domain AYR67_15120 PF00501 AMP-binding enzyme AYR67_15125 PF04751 Protein of unknown function (DUF615) AYR67_15130 PF00381 PTS HPr component phosphorylation site AYR67_15135 PF03668 P-loop ATPase protein family AYR67_15140 PF02569 Pantoate-beta-alanine ligase AYR67_15145 PF02548 Ketopantoate hydroxymethyltransferase AYR67_15150 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYR67_15155 PF12627 Probable RNA and SrmB- binding site of polymerase A AYR67_15155 PF12626 Polymerase A arginine-rich C-terminus AYR67_15155 PF01743 Poly A polymerase head domain AYR67_15165 PF03819 MazG nucleotide pyrophosphohydrolase domain AYR67_15175 PF13291 ACT domain AYR67_15175 PF04607 Region found in RelA / SpoT proteins AYR67_15175 PF02824 TGS domain AYR67_15180 PF05958 tRNA (Uracil-5-)-methyltransferase AYR67_15190 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_15195 PF01627 Hpt domain AYR67_15195 PF00512 His Kinase A (phospho-acceptor) domain AYR67_15195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AYR67_15195 PF00072 Response regulator receiver domain AYR67_15195 PF00672 HAMP domain AYR67_15200 PF00378 Enoyl-CoA hydratase/isomerase AYR67_15205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR67_15205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR67_15210 PF01261 Xylose isomerase-like TIM barrel AYR67_15220 PF00106 short chain dehydrogenase AYR67_15225 PF02233 NAD(P) transhydrogenase beta subunit AYR67_15230 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AYR67_15235 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AYR67_15235 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AYR67_15240 PF00892 EamA-like transporter family AYR67_15250 PF07690 Major Facilitator Superfamily AYR67_15255 PF01207 Dihydrouridine synthase (Dus) AYR67_15265 PF03466 LysR substrate binding domain AYR67_15265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_15270 PF00899 ThiF family AYR67_15280 PF00330 Aconitase family (aconitate hydratase) AYR67_15280 PF00694 Aconitase C-terminal domain AYR67_15285 PF01026 TatD related DNase AYR67_15300 PF16658 Class II release factor RF3, C-terminal domain AYR67_15300 PF03144 Elongation factor Tu domain 2 AYR67_15300 PF00009 Elongation factor Tu GTP binding domain AYR67_15320 PF00563 EAL domain AYR67_15320 PF00990 Diguanylate cyclase, GGDEF domain AYR67_15320 PF03707 Bacterial signalling protein N terminal repeat AYR67_15325 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AYR67_15325 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AYR67_15330 PF10369 Small subunit of acetolactate synthase AYR67_15335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYR67_15335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYR67_15335 PF00205 Thiamine pyrophosphate enzyme, central domain AYR67_15345 PF13603 Leucyl-tRNA synthetase, Domain 2 AYR67_15345 PF00133 tRNA synthetases class I (I, L, M and V) AYR67_15345 PF08264 Anticodon-binding domain of tRNA AYR67_15345 PF09334 tRNA synthetases class I (M) AYR67_15360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYR67_15365 PF02687 FtsX-like permease family AYR67_15365 PF12704 MacB-like periplasmic core domain AYR67_15365 PF00005 ABC transporter AYR67_15370 PF02321 Outer membrane efflux protein AYR67_15385 PF00929 Exonuclease AYR67_15390 PF03193 RsgA GTPase AYR67_15400 PF00462 Glutaredoxin AYR67_15405 PF02556 Preprotein translocase subunit SecB AYR67_15420 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR67_15420 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR67_15435 PF02801 Beta-ketoacyl synthase, C-terminal domain AYR67_15435 PF00109 Beta-ketoacyl synthase, N-terminal domain AYR67_15445 PF04820 Tryptophan halogenase AYR67_15465 PF00221 Aromatic amino acid lyase AYR67_15480 PF13193 AMP-binding enzyme C-terminal domain AYR67_15480 PF00501 AMP-binding enzyme AYR67_15490 PF00550 Phosphopantetheine attachment site AYR67_15495 PF00550 Phosphopantetheine attachment site AYR67_15510 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYR67_15510 PF01926 50S ribosome-binding GTPase AYR67_15515 PF13360 PQQ-like domain AYR67_15525 PF03129 Anticodon binding domain AYR67_15525 PF13393 Histidyl-tRNA synthetase AYR67_15530 PF04551 GcpE protein AYR67_15535 PF13464 Domain of unknown function (DUF4115) AYR67_15545 PF04055 Radical SAM superfamily AYR67_15550 PF00334 Nucleoside diphosphate kinase AYR67_15555 PF04384 Iron-sulphur cluster assembly AYR67_15560 PF01569 PAP2 superfamily AYR67_15565 PF13439 Glycosyltransferase Family 4 AYR67_15565 PF00534 Glycosyl transferases group 1 AYR67_15570 PF11818 C-terminal domain of tail specific protease (DUF3340) AYR67_15570 PF17804 Tail specific protease N-terminal domain AYR67_15570 PF03572 Peptidase family S41 AYR67_15570 PF00595 PDZ domain AYR67_15575 PF00933 Glycosyl hydrolase family 3 N terminal domain AYR67_15585 PF00561 alpha/beta hydrolase fold AYR67_15590 PF00171 Aldehyde dehydrogenase family AYR67_15595 PF00171 Aldehyde dehydrogenase family AYR67_15600 PF01202 Shikimate kinase AYR67_15605 PF02447 GntP family permease AYR67_15610 PF01081 KDPG and KHG aldolase AYR67_15615 PF00920 Dehydratase family AYR67_15630 PF00871 Acetokinase family AYR67_15635 PF07085 DRTGG domain AYR67_15635 PF01515 Phosphate acetyl/butaryl transferase AYR67_15640 PF05681 Fumarate hydratase (Fumerase) AYR67_15640 PF05683 Fumarase C-terminus AYR67_15655 PF10431 C-terminal, D2-small domain, of ClpB protein AYR67_15655 PF07724 AAA domain (Cdc48 subfamily) AYR67_15655 PF06689 ClpX C4-type zinc finger AYR67_15660 PF00574 Clp protease AYR67_15665 PF05697 Bacterial trigger factor protein (TF) AYR67_15665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR67_15665 PF05698 Bacterial trigger factor protein (TF) C-terminus AYR67_15675 PF13640 2OG-Fe(II) oxygenase superfamily AYR67_15675 PF18331 PKHD-type hydroxylase C-terminal domain AYR67_15680 PF00682 HMGL-like AYR67_15680 PF08502 LeuA allosteric (dimerisation) domain AYR67_15685 PF00561 alpha/beta hydrolase fold AYR67_15690 PF07021 Methionine biosynthesis protein MetW AYR67_15690 PF00561 alpha/beta hydrolase fold AYR67_15700 PF01725 Ham1 family AYR67_15710 PF02416 mttA/Hcf106 family AYR67_15715 PF02416 mttA/Hcf106 family AYR67_15720 PF00902 Sec-independent protein translocase protein (TatC) AYR67_15740 PF01790 Prolipoprotein diacylglyceryl transferase AYR67_15755 PF00303 Thymidylate synthase AYR67_15760 PF00186 Dihydrofolate reductase AYR67_15770 PF01625 Peptide methionine sulfoxide reductase AYR67_15775 PF02472 Biopolymer transport protein ExbD/TolR AYR67_15780 PF01618 MotA/TolQ/ExbB proton channel family AYR67_15790 PF01842 ACT domain AYR67_15790 PF00551 Formyl transferase AYR67_15800 PF00171 Aldehyde dehydrogenase family AYR67_15805 PF00830 Ribosomal L28 family AYR67_15810 PF00471 Ribosomal protein L33 AYR67_15815 PF00999 Sodium/hydrogen exchanger family AYR67_15815 PF02254 TrkA-N domain AYR67_15835 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AYR67_15840 PF00580 UvrD/REP helicase N-terminal domain AYR67_15840 PF13361 UvrD-like helicase C-terminal domain AYR67_15855 PF01131 DNA topoisomerase AYR67_15855 PF01396 Topoisomerase DNA binding C4 zinc finger AYR67_15855 PF01751 Toprim domain AYR67_15855 PF08272 Topoisomerase I zinc-ribbon-like AYR67_15865 PF01638 HxlR-like helix-turn-helix AYR67_15870 PF08240 Alcohol dehydrogenase GroES-like domain AYR67_15870 PF00107 Zinc-binding dehydrogenase AYR67_15885 PF01810 LysE type translocator AYR67_15890 PF03279 Bacterial lipid A biosynthesis acyltransferase AYR67_15900 PF00375 Sodium:dicarboxylate symporter family AYR67_15910 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYR67_15910 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYR67_15930 PF01416 tRNA pseudouridine synthase AYR67_15940 PF01176 Translation initiation factor 1A / IF-1 AYR67_15955 PF00180 Isocitrate/isopropylmalate dehydrogenase AYR67_15965 PF00694 Aconitase C-terminal domain AYR67_15970 PF00330 Aconitase family (aconitate hydratase) AYR67_15980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_15980 PF03466 LysR substrate binding domain AYR67_16000 PF00293 NUDIX domain AYR67_16005 PF01590 GAF domain AYR67_16005 PF05524 PEP-utilising enzyme, N-terminal AYR67_16005 PF00391 PEP-utilising enzyme, mobile domain AYR67_16005 PF02896 PEP-utilising enzyme, TIM barrel domain AYR67_16010 PF00141 Peroxidase AYR67_16015 PF12706 Beta-lactamase superfamily domain AYR67_16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_16020 PF03466 LysR substrate binding domain AYR67_16030 PF02798 Glutathione S-transferase, N-terminal domain AYR67_16035 PF13280 WYL domain AYR67_16035 PF08279 HTH domain AYR67_16040 PF13419 Haloacid dehalogenase-like hydrolase AYR67_16045 PF00849 RNA pseudouridylate synthase AYR67_16045 PF01479 S4 domain AYR67_16050 PF00575 S1 RNA binding domain AYR67_16050 PF12111 Polyribonucleotide phosphorylase C terminal AYR67_16050 PF10150 Ribonuclease E/G family AYR67_16055 PF13193 AMP-binding enzyme C-terminal domain AYR67_16055 PF00501 AMP-binding enzyme AYR67_16070 PF03466 LysR substrate binding domain AYR67_16070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_16075 PF00106 short chain dehydrogenase AYR67_16080 PF06969 HemN C-terminal domain AYR67_16080 PF04055 Radical SAM superfamily AYR67_16090 PF01554 MatE AYR67_16095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_16095 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_16095 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR67_16100 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYR67_16100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_16105 PF03109 ABC1 family AYR67_16110 PF01197 Ribosomal protein L31 AYR67_16120 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AYR67_16140 PF03884 DNA gyrase inhibitor YacG AYR67_16145 PF00753 Metallo-beta-lactamase superfamily AYR67_16150 PF00762 Ferrochelatase AYR67_16160 PF01177 Asp/Glu/Hydantoin racemase AYR67_16175 PF01206 Sulfurtransferase TusA AYR67_16180 PF03471 Transporter associated domain AYR67_16180 PF00571 CBS domain AYR67_16185 PF00795 Carbon-nitrogen hydrolase AYR67_16190 PF01588 Putative tRNA binding domain AYR67_16200 PF08334 Type II secretion system (T2SS), protein G AYR67_16200 PF07963 Prokaryotic N-terminal methylation motif AYR67_16205 PF00482 Type II secretion system (T2SS), protein F AYR67_16210 PF18074 Primosomal protein N C-terminal domain AYR67_16210 PF00270 DEAD/DEAH box helicase AYR67_16210 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AYR67_16210 PF00271 Helicase conserved C-terminal domain AYR67_16210 PF17764 3′ DNA-binding domain (3′BD) AYR67_16215 PF00999 Sodium/hydrogen exchanger family AYR67_16215 PF02254 TrkA-N domain AYR67_16220 PF01430 Hsp33 protein AYR67_16230 PF00226 DnaJ domain AYR67_16230 PF01556 DnaJ C terminal domain AYR67_16240 PF01544 CorA-like Mg2+ transporter protein AYR67_16245 PF00575 S1 RNA binding domain AYR67_16245 PF00013 KH domain AYR67_16245 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AYR67_16245 PF01138 3' exoribonuclease family, domain 1 AYR67_16245 PF03725 3' exoribonuclease family, domain 2 AYR67_16250 PF00312 Ribosomal protein S15 AYR67_16260 PF13538 UvrD-like helicase C-terminal domain AYR67_16265 PF12705 PD-(D/E)XK nuclease superfamily AYR67_16265 PF13361 UvrD-like helicase C-terminal domain AYR67_16265 PF00580 UvrD/REP helicase N-terminal domain AYR67_16270 PF17946 RecC C-terminal domain AYR67_16280 PF03976 Polyphosphate kinase 2 (PPK2) AYR67_16290 PF01209 ubiE/COQ5 methyltransferase family AYR67_16300 PF03109 ABC1 family AYR67_16305 PF01494 FAD binding domain AYR67_16310 PF01502 Phosphoribosyl-AMP cyclohydrolase AYR67_16325 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYR67_16325 PF00361 Proton-conducting membrane transporter AYR67_16325 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AYR67_16325 PF13244 Domain of unknown function (DUF4040) AYR67_16330 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYR67_16335 PF00361 Proton-conducting membrane transporter AYR67_16345 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AYR67_16355 PF02033 Ribosome-binding factor A AYR67_16360 PF08364 Bacterial translation initiation factor IF-2 associated region AYR67_16360 PF04760 Translation initiation factor IF-2, N-terminal region AYR67_16360 PF11987 Translation-initiation factor 2 AYR67_16360 PF00009 Elongation factor Tu GTP binding domain AYR67_16365 PF13184 NusA-like KH domain AYR67_16365 PF08529 NusA N-terminal domain AYR67_16365 PF00575 S1 RNA binding domain AYR67_16370 PF17384 RimP C-terminal SH3 domain AYR67_16370 PF02576 RimP N-terminal domain AYR67_16390 PF03840 Preprotein translocase SecG subunit AYR67_16395 PF00121 Triosephosphate isomerase AYR67_16400 PF00437 Type II/IV secretion system protein AYR67_16400 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AYR67_16405 PF00482 Type II secretion system (T2SS), protein F AYR67_16410 PF01478 Type IV leader peptidase family AYR67_16410 PF06750 Bacterial Peptidase A24 N-terminal domain AYR67_16415 PF01121 Dephospho-CoA kinase AYR67_16425 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYR67_16425 PF00588 SpoU rRNA Methylase family AYR67_16430 PF06865 Pyrimidine/purine nucleoside phosphorylase AYR67_16440 PF02463 RecF/RecN/SMC N terminal domain AYR67_16445 PF02622 Uncharacterized ACR, COG1678 AYR67_16450 PF03652 Holliday junction resolvase AYR67_16455 PF13533 Biotin-lipoyl like AYR67_16480 PF12833 Helix-turn-helix domain AYR67_16480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYR67_16480 PF02805 Metal binding domain of Ada AYR67_16480 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYR67_16485 PF01066 CDP-alcohol phosphatidyltransferase AYR67_16495 PF01541 GIY-YIG catalytic domain AYR67_16495 PF08459 UvrC Helix-hairpin-helix N-terminal AYR67_16495 PF02151 UvrB/uvrC motif AYR67_16515 PF00378 Enoyl-CoA hydratase/isomerase AYR67_16515 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYR67_16515 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYR67_16520 PF02803 Thiolase, C-terminal domain AYR67_16520 PF00108 Thiolase, N-terminal domain AYR67_16540 PF00376 MerR family regulatory protein AYR67_16540 PF09278 MerR, DNA binding AYR67_16550 PF01323 DSBA-like thioredoxin domain AYR67_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_16565 PF00183 Hsp90 protein AYR67_16580 PF13726 Na+-H+ antiporter family AYR67_16580 PF03553 Na+/H+ antiporter family AYR67_16585 PF00561 alpha/beta hydrolase fold AYR67_16605 PF05000 RNA polymerase Rpb1, domain 4 AYR67_16605 PF04998 RNA polymerase Rpb1, domain 5 AYR67_16605 PF04997 RNA polymerase Rpb1, domain 1 AYR67_16605 PF04983 RNA polymerase Rpb1, domain 3 AYR67_16605 PF00623 RNA polymerase Rpb1, domain 2 AYR67_16610 PF04560 RNA polymerase Rpb2, domain 7 AYR67_16610 PF00562 RNA polymerase Rpb2, domain 6 AYR67_16610 PF04563 RNA polymerase beta subunit AYR67_16610 PF10385 RNA polymerase beta subunit external 1 domain AYR67_16610 PF04565 RNA polymerase Rpb2, domain 3 AYR67_16610 PF04561 RNA polymerase Rpb2, domain 2 AYR67_16615 PF00542 Ribosomal protein L7/L12 C-terminal domain AYR67_16615 PF16320 Ribosomal protein L7/L12 dimerisation domain AYR67_16620 PF00466 Ribosomal protein L10 AYR67_16625 PF00687 Ribosomal protein L1p/L10e family AYR67_16630 PF03946 Ribosomal protein L11, N-terminal domain AYR67_16630 PF00298 Ribosomal protein L11, RNA binding domain AYR67_16635 PF00467 KOW motif AYR67_16635 PF02357 Transcription termination factor nusG AYR67_16640 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AYR67_16650 PF03143 Elongation factor Tu C-terminal domain AYR67_16650 PF03144 Elongation factor Tu domain 2 AYR67_16650 PF00009 Elongation factor Tu GTP binding domain AYR67_16675 PF00425 chorismate binding enzyme AYR67_16675 PF04715 Anthranilate synthase component I, N terminal region AYR67_16680 PF13419 Haloacid dehalogenase-like hydrolase AYR67_16685 PF00498 FHA domain AYR67_16685 PF12401 Protein of unknown function (DUF2662) AYR67_16690 PF00263 Bacterial type II and III secretion system protein AYR67_16690 PF03958 Bacterial type II/III secretion system short domain AYR67_16705 PF00816 H-NS histone family AYR67_16730 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AYR67_16730 PF03900 Porphobilinogen deaminase, C-terminal domain AYR67_16735 PF04397 LytTr DNA-binding domain AYR67_16735 PF00072 Response regulator receiver domain AYR67_16740 PF06580 Histidine kinase AYR67_16740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_16740 PF07694 5TMR of 5TMR-LYT AYR67_16745 PF00206 Lyase AYR67_16745 PF14698 Argininosuccinate lyase C-terminal AYR67_16750 PF04362 Bacterial Fe(2+) trafficking AYR67_16755 PF01895 PhoU domain AYR67_16760 PF02321 Outer membrane efflux protein AYR67_16765 PF00892 EamA-like transporter family AYR67_16780 PF01964 Radical SAM ThiC family AYR67_16780 PF13667 ThiC-associated domain AYR67_16785 PF00293 NUDIX domain AYR67_16790 PF00149 Calcineurin-like phosphoesterase AYR67_16795 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYR67_16800 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYR67_16805 PF01098 Cell cycle protein AYR67_16810 PF02875 Mur ligase family, glutamate ligase domain AYR67_16810 PF08245 Mur ligase middle domain AYR67_16820 PF07670 Nucleoside recognition AYR67_16820 PF07664 Ferrous iron transport protein B C terminus AYR67_16820 PF02421 Ferrous iron transport protein B AYR67_16830 PF02899 Phage integrase, N-terminal SAM-like domain AYR67_16830 PF00589 Phage integrase family AYR67_16835 PF13098 Thioredoxin-like domain AYR67_16835 PF10411 Disulfide bond isomerase protein N-terminus AYR67_16840 PF03447 Homoserine dehydrogenase, NAD binding domain AYR67_16840 PF00742 Homoserine dehydrogenase AYR67_16840 PF01842 ACT domain AYR67_16845 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_16850 PF00768 D-alanyl-D-alanine carboxypeptidase AYR67_16855 PF00072 Response regulator receiver domain AYR67_16855 PF00196 Bacterial regulatory proteins, luxR family AYR67_16860 PF00512 His Kinase A (phospho-acceptor) domain AYR67_16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYR67_16865 PF02954 Bacterial regulatory protein, Fis family AYR67_16865 PF00158 Sigma-54 interaction domain AYR67_16865 PF00072 Response regulator receiver domain AYR67_16870 PF03572 Peptidase family S41 AYR67_16870 PF00595 PDZ domain AYR67_16875 PF01676 Metalloenzyme superfamily AYR67_16875 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYR67_16880 PF03739 Lipopolysaccharide export system permease LptF/LptG AYR67_16890 PF02789 Cytosol aminopeptidase family, N-terminal domain AYR67_16890 PF00883 Cytosol aminopeptidase family, catalytic domain AYR67_16910 PF00677 Lumazine binding domain AYR67_16920 PF01872 RibD C-terminal domain AYR67_16920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYR67_16925 PF03477 ATP cone domain AYR67_16930 PF00909 Ammonium Transporter Family AYR67_16935 PF00543 Nitrogen regulatory protein P-II AYR67_16955 PF01636 Phosphotransferase enzyme family AYR67_16960 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AYR67_16980 PF00440 Bacterial regulatory proteins, tetR family AYR67_16980 PF02909 Tetracyclin repressor-like, C-terminal domain AYR67_16985 PF07690 Major Facilitator Superfamily AYR67_17005 PF00905 Penicillin binding protein transpeptidase domain AYR67_17035 PF01740 STAS domain AYR67_17035 PF00916 Sulfate permease family AYR67_17040 PF00582 Universal stress protein family AYR67_17070 PF00665 Integrase core domain AYR67_17080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR67_17080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR67_17080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR67_17080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR67_17085 PF00809 Pterin binding enzyme AYR67_17105 PF00665 Integrase core domain AYR67_17130 PF02899 Phage integrase, N-terminal SAM-like domain AYR67_17130 PF00589 Phage integrase family AYR67_17170 PF00905 Penicillin binding protein transpeptidase domain AYR67_17200 PF00916 Sulfate permease family AYR67_17200 PF01740 STAS domain AYR67_17205 PF00582 Universal stress protein family AYR67_17225 PF00665 Integrase core domain AYR67_17250 PF00701 Dihydrodipicolinate synthetase family AYR67_17260 PF03573 outer membrane porin, OprD family AYR67_17265 PF00719 Inorganic pyrophosphatase AYR67_17280 PF13193 AMP-binding enzyme C-terminal domain AYR67_17280 PF00501 AMP-binding enzyme AYR67_17285 PF03989 DNA gyrase C-terminal domain, beta-propeller AYR67_17285 PF00521 DNA gyrase/topoisomerase IV, subunit A AYR67_17290 PF07690 Major Facilitator Superfamily AYR67_17295 PF03458 UPF0126 domain AYR67_17300 PF02810 SEC-C motif AYR67_17305 PF03471 Transporter associated domain AYR67_17305 PF03741 Integral membrane protein TerC family AYR67_17310 PF03641 Possible lysine decarboxylase AYR67_17315 PF07690 Major Facilitator Superfamily AYR67_17325 PF11799 impB/mucB/samB family C-terminal domain AYR67_17325 PF11798 IMS family HHH motif AYR67_17325 PF00817 impB/mucB/samB family AYR67_17340 PF11842 Domain of unknown function (DUF3362) AYR67_17340 PF04055 Radical SAM superfamily AYR67_17340 PF08497 Radical SAM N-terminal AYR67_17360 PF03358 NADPH-dependent FMN reductase AYR67_17370 PF00291 Pyridoxal-phosphate dependent enzyme AYR67_17405 PF00440 Bacterial regulatory proteins, tetR family AYR67_17430 PF01327 Polypeptide deformylase AYR67_17440 PF02481 DNA recombination-mediator protein A AYR67_17440 PF17782 DprA winged helix domain AYR67_17445 PF01300 Telomere recombination AYR67_17450 PF00892 EamA-like transporter family AYR67_17455 PF00440 Bacterial regulatory proteins, tetR family AYR67_17460 PF07690 Major Facilitator Superfamily AYR67_17470 PF00255 Glutathione peroxidase AYR67_17480 PF11008 Protein of unknown function (DUF2846) AYR67_17485 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYR67_17490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR67_17490 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYR67_17495 PF00231 ATP synthase AYR67_17500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYR67_17500 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYR67_17500 PF00306 ATP synthase alpha/beta chain, C terminal domain AYR67_17505 PF00213 ATP synthase delta (OSCP) subunit AYR67_17510 PF00430 ATP synthase B/B' CF(0) AYR67_17515 PF00137 ATP synthase subunit C AYR67_17520 PF00119 ATP synthase A chain AYR67_17540 PF00005 ABC transporter AYR67_17545 PF00950 ABC 3 transport family AYR67_17550 PF01810 LysE type translocator AYR67_17555 PF04261 Dyp-type peroxidase family AYR67_17560 PF03949 Malic enzyme, NAD binding domain AYR67_17560 PF00390 Malic enzyme, N-terminal domain AYR67_17565 PF13737 Transposase DDE domain AYR67_17570 PF05746 DALR anticodon binding domain AYR67_17570 PF00750 tRNA synthetases class I (R) AYR67_17570 PF03485 Arginyl tRNA synthetase N terminal domain AYR67_17590 PF02678 Pirin AYR67_17590 PF05726 Pirin C-terminal cupin domain AYR67_17600 PF03551 Transcriptional regulator PadR-like family AYR67_17605 PF01909 Nucleotidyltransferase domain AYR67_17605 PF13427 Domain of unknown function (DUF4111) AYR67_17610 PF00117 Glutamine amidotransferase class-I AYR67_17610 PF00958 GMP synthase C terminal domain AYR67_17610 PF02540 NAD synthase AYR67_17615 PF04286 Protein of unknown function (DUF445) AYR67_17620 PF07681 DoxX AYR67_17625 PF09335 SNARE associated Golgi protein AYR67_17640 PF13614 AAA domain AYR67_17650 PF01722 BolA-like protein AYR67_17665 PF13737 Transposase DDE domain AYR67_17675 PF00765 Autoinducer synthase AYR67_17680 PF07690 Major Facilitator Superfamily AYR67_17680 PF00083 Sugar (and other) transporter AYR67_17685 PF00378 Enoyl-CoA hydratase/isomerase AYR67_17690 PF00378 Enoyl-CoA hydratase/isomerase AYR67_17695 PF02770 Acyl-CoA dehydrogenase, middle domain AYR67_17695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYR67_17695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYR67_17700 PF00501 AMP-binding enzyme AYR67_17700 PF13193 AMP-binding enzyme C-terminal domain AYR67_17705 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYR67_17705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYR67_17710 PF00171 Aldehyde dehydrogenase family AYR67_17720 PF00324 Amino acid permease AYR67_17725 PF00324 Amino acid permease AYR67_17730 PF01042 Endoribonuclease L-PSP AYR67_17735 PF00842 Alanine racemase, C-terminal domain AYR67_17735 PF01168 Alanine racemase, N-terminal domain AYR67_17740 PF01266 FAD dependent oxidoreductase AYR67_17745 PF01037 Lrp/AsnC ligand binding domain AYR67_17755 PF07715 TonB-dependent Receptor Plug Domain AYR67_17755 PF00593 TonB dependent receptor AYR67_17770 PF00849 RNA pseudouridylate synthase AYR67_17785 PF13737 Transposase DDE domain AYR67_17810 PF00330 Aconitase family (aconitate hydratase) AYR67_17810 PF00694 Aconitase C-terminal domain AYR67_17815 PF00285 Citrate synthase, C-terminal domain AYR67_17825 PF07729 FCD domain AYR67_17825 PF00392 Bacterial regulatory proteins, gntR family AYR67_17830 PF00155 Aminotransferase class I and II AYR67_17835 PF01565 FAD binding domain AYR67_17835 PF09330 D-lactate dehydrogenase, membrane binding AYR67_17840 PF01070 FMN-dependent dehydrogenase AYR67_17845 PF07729 FCD domain AYR67_17845 PF00392 Bacterial regulatory proteins, gntR family AYR67_17850 PF02652 L-lactate permease AYR67_17855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYR67_17855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYR67_17855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYR67_17855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYR67_17860 PF16363 GDP-mannose 4,6 dehydratase AYR67_17865 PF00342 Phosphoglucose isomerase AYR67_17870 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYR67_17870 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYR67_17870 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYR67_17875 PF00483 Nucleotidyl transferase AYR67_17880 PF02397 Bacterial sugar transferase AYR67_17885 PF00953 Glycosyl transferase family 4 AYR67_17895 PF13579 Glycosyl transferase 4-like domain AYR67_17900 PF02350 UDP-N-acetylglucosamine 2-epimerase AYR67_17905 PF01370 NAD dependent epimerase/dehydratase family AYR67_17910 PF02719 Polysaccharide biosynthesis protein AYR67_17910 PF08485 Polysaccharide biosynthesis protein C-terminal AYR67_17935 PF02348 Cytidylyltransferase AYR67_17940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYR67_17940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYR67_17945 PF00483 Nucleotidyl transferase AYR67_17950 PF00132 Bacterial transferase hexapeptide (six repeats) AYR67_17955 PF08666 SAF domain AYR67_17955 PF03102 NeuB family AYR67_17960 PF02350 UDP-N-acetylglucosamine 2-epimerase AYR67_17965 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYR67_17970 PF02719 Polysaccharide biosynthesis protein AYR67_17975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYR67_17975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYR67_17975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYR67_17980 PF02563 Polysaccharide biosynthesis/export protein AYR67_17980 PF10531 SLBB domain AYR67_17980 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AYR67_17985 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYR67_17990 PF02706 Chain length determinant protein AYR67_17990 PF13614 AAA domain AYR67_17990 PF13807 G-rich domain on putative tyrosine kinase AYR67_17995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYR67_17995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR67_18000 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYR67_18000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR67_18005 PF03023 Lipid II flippase MurJ AYR67_18010 PF01510 N-acetylmuramoyl-L-alanine amidase AYR67_18015 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYR67_18015 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYR67_18030 PF03725 3' exoribonuclease family, domain 2 AYR67_18030 PF01138 3' exoribonuclease family, domain 1 AYR67_18035 PF00487 Fatty acid desaturase AYR67_18040 PF00175 Oxidoreductase NAD-binding domain AYR67_18045 PF00440 Bacterial regulatory proteins, tetR family AYR67_18050 PF00440 Bacterial regulatory proteins, tetR family AYR67_18050 PF08360 QacR-like protein, C-terminal region AYR67_18055 PF01323 DSBA-like thioredoxin domain AYR67_18065 PF13419 Haloacid dehalogenase-like hydrolase AYR67_18070 PF00106 short chain dehydrogenase AYR67_18085 PF00696 Amino acid kinase family AYR67_18085 PF00583 Acetyltransferase (GNAT) family AYR67_18090 PF09084 NMT1/THI5 like AYR67_18095 PF09084 NMT1/THI5 like AYR67_18100 PF00296 Luciferase-like monooxygenase AYR67_18105 PF00528 Binding-protein-dependent transport system inner membrane component AYR67_18110 PF00005 ABC transporter AYR67_18115 PF08362 YcdC-like protein, C-terminal region AYR67_18115 PF00440 Bacterial regulatory proteins, tetR family AYR67_18120 PF01048 Phosphorylase superfamily AYR67_18130 PF01687 Riboflavin kinase AYR67_18130 PF06574 FAD synthetase AYR67_18135 PF08264 Anticodon-binding domain of tRNA AYR67_18135 PF00133 tRNA synthetases class I (I, L, M and V) AYR67_18135 PF06827 Zinc finger found in FPG and IleRS AYR67_18140 PF01252 Signal peptidase (SPase) II AYR67_18145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYR67_18185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYR67_18190 PF07859 alpha/beta hydrolase fold AYR67_18215 PF03466 LysR substrate binding domain AYR67_18215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYR67_18220 PF01025 GrpE AYR67_18225 PF00012 Hsp70 protein AYR67_18245 PF13406 Transglycosylase SLT domain AYR67_18250 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AYR67_18250 PF02222 ATP-grasp domain AYR67_18255 PF00731 AIR carboxylase AYR67_18270 PF08245 Mur ligase middle domain AYR67_18270 PF01225 Mur ligase family, catalytic domain AYR67_18270 PF02875 Mur ligase family, glutamate ligase domain AYR67_18280 PF00872 Transposase, Mutator family AYR67_18285 PF01569 PAP2 superfamily AYR67_18290 PF03741 Integral membrane protein TerC family AYR67_18300 PF03738 Glutathionylspermidine synthase preATP-grasp AYR67_18305 PF00355 Rieske [2Fe-2S] domain AYR67_18310 PF01979 Amidohydrolase family AYR67_18320 PF00156 Phosphoribosyl transferase domain AYR67_18330 PF13098 Thioredoxin-like domain AYR67_18330 PF10411 Disulfide bond isomerase protein N-terminus AYR67_18335 PF16916 Dimerisation domain of Zinc Transporter AYR67_18335 PF01545 Cation efflux family AYR67_18340 PF02583 Metal-sensitive transcriptional repressor AYR67_18345 PF01926 50S ribosome-binding GTPase AYR67_18345 PF12631 MnmE helical domain AYR67_18345 PF10396 GTP-binding protein TrmE N-terminus AYR67_18350 PF14849 YidC periplasmic domain AYR67_18350 PF02096 60Kd inner membrane protein AYR67_18355 PF01809 Putative membrane protein insertion efficiency factor AYR67_18360 PF00825 Ribonuclease P AYR67_18365 PF00468 Ribosomal protein L34