locus-tag	class	description
BSR55_00010	COG0592	DNA-directed DNA polymerase activity
BSR55_00020	COG0187	DNA topoisomerase II activity
BSR55_00030	COG0488	(ABC) transporter
BSR55_00040	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BSR55_00045	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BSR55_00075	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BSR55_00215	COG1309	transcriptional regulator
BSR55_00220	COG1116	anion transmembrane transporter activity
BSR55_00225	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BSR55_00230	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BSR55_00235	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BSR55_00240	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BSR55_00245	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BSR55_00245	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BSR55_00270	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_00275	COG0546	phosphoglycolate phosphatase activity
BSR55_00280	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BSR55_00295	COG1309	transcriptional regulator
BSR55_00315	COG2207	Transcriptional regulator
BSR55_00325	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BSR55_00350	COG3023	N-Acetylmuramoyl-L-alanine amidase
BSR55_00380	COG1596	polysaccharide export
BSR55_00390	COG1216	Glycosyl transferase, family 2
BSR55_00395	COG0438	transferase activity, transferring glycosyl groups
BSR55_00405	COG1086	Polysaccharide biosynthesis protein
BSR55_00415	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BSR55_00425	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BSR55_00430	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BSR55_00445	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BSR55_00450	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BSR55_00485	COG1454	alcohol dehydrogenase
BSR55_00500	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BSR55_00505	COG0235	Class ii aldolase
BSR55_00515	COG1414	Transcriptional regulator
BSR55_00520	COG4948	Mandelate Racemase Muconate Lactonizing
BSR55_00530	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_00540	COG3254	rhamnose metabolic process
BSR55_00550	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_00570	COG0271	Belongs to the BolA IbaG family
BSR55_00580	COG1192	Involved in chromosome partitioning
BSR55_00590	COG0586	Pfam SNARE associated Golgi protein
BSR55_00595	COG2259	Doxx family
BSR55_00605	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BSR55_00605	COG0519	Catalyzes the synthesis of GMP from XMP
BSR55_00630	COG1902	pentaerythritol trinitrate reductase activity
BSR55_00635	COG1519	Transferase
BSR55_00640	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BSR55_00645	COG0668	transmembrane transport
BSR55_00655	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BSR55_00675	COG0431	NADPH-dependent FMN reductase
BSR55_00685	COG2814	Major facilitator Superfamily
BSR55_00710	COG4452	Inner membrane protein CreD
BSR55_00715	COG2205	protein histidine kinase activity
BSR55_00720	COG0745	RESPONSE REGULATOR receiver
BSR55_00750	COG0281	malic enzyme
BSR55_00755	COG3501	Rhs element vgr protein
BSR55_00775	COG2837	iron assimilation
BSR55_00790	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BSR55_00795	COG1121	(ABC) transporter
BSR55_00815	COG0356	it plays a direct role in the translocation of protons across the membrane
BSR55_00880	COG0386	Belongs to the glutathione peroxidase family
BSR55_00900	COG1309	transcriptional regulator
BSR55_00905	COG0697	spore germination
BSR55_00910	COG0009	L-threonylcarbamoyladenylate synthase
BSR55_00915	COG0758	DNA mediated transformation
BSR55_00920	COG1652	LysM domain
BSR55_00935	COG4771	TonB-dependent receptor
BSR55_00955	COG1309	transcriptional regulator
BSR55_00990	COG2133	pyrroloquinoline quinone binding
BSR55_01010	COG0784	Response regulator, receiver
BSR55_01010	COG2205	protein histidine kinase activity
BSR55_01015	COG3162	membrane
BSR55_01020	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BSR55_01030	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BSR55_01045	COG3706	GGDEF domain
BSR55_01075	COG1253	flavin adenine dinucleotide binding
BSR55_01085	COG2860	membrane
BSR55_01095	COG0477	Major facilitator Superfamily
BSR55_01110	COG0318	PFAM AMP-dependent synthetase and ligase
BSR55_01125	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BSR55_01160	COG0673	inositol 2-dehydrogenase activity
BSR55_01170	COG2207	Transcriptional regulator
BSR55_01175	COG1929	Belongs to the glycerate kinase type-1 family
BSR55_01180	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BSR55_01185	COG0738	Major facilitator superfamily
BSR55_01210	COG1024	Enoyl-CoA hydratase
BSR55_01230	COG0606	chelatase, subunit chli
BSR55_01240	COG0347	Belongs to the P(II) protein family
BSR55_01245	COG0004	ammonium transporteR
BSR55_01255	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BSR55_01255	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BSR55_01270	COG0586	Pfam SNARE associated Golgi protein
BSR55_01280	COG0772	Belongs to the SEDS family
BSR55_01285	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BSR55_01290	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BSR55_01295	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BSR55_01320	COG0704	Plays a role in the regulation of phosphate uptake
BSR55_01335	COG0488	(ABC) transporter
BSR55_01350	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BSR55_01395	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BSR55_01440	COG0427	acetyl-CoA hydrolase
BSR55_01445	COG2205	protein histidine kinase activity
BSR55_01450	COG0745	RESPONSE REGULATOR receiver
BSR55_01465	COG0789	Transcriptional regulator
BSR55_01470	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BSR55_01470	COG3320	Male sterility
BSR55_01480	COG0583	DNA-binding transcription factor activity
BSR55_01485	COG4221	oxidoreductase activity
BSR55_01565	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BSR55_01580	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BSR55_01605	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BSR55_01610	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BSR55_01615	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BSR55_01620	COG2226	methyltransferase
BSR55_01670	COG0069	glutamate synthase activity
BSR55_01670	COG0070	glutamate synthase
BSR55_01670	COG0067	glutamate synthase
BSR55_01675	COG0493	'glutamate synthase
BSR55_01685	COG0307	riboflavin synthase, alpha
BSR55_01695	COG2212	antiporter activity
BSR55_01705	COG0651	ATP synthesis coupled electron transport
BSR55_01710	COG1006	Multisubunit Na H antiporter MnhC subunit
BSR55_01715	COG2111	Na H antiporter
BSR55_01715	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BSR55_01735	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BSR55_01755	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BSR55_01790	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BSR55_01795	COG1074	ATP-dependent DNA helicase activity
BSR55_01800	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BSR55_01825	COG0598	Magnesium transport protein CorA
BSR55_01830	COG2841	Protein conserved in bacteria
BSR55_01835	COG0789	Transcriptional regulator
BSR55_01850	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BSR55_01885	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BSR55_01915	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BSR55_01920	COG0815	Transfers the fatty acyl group on membrane lipoproteins
BSR55_01925	COG4535	Mg2 and Co2 transporter CorC
BSR55_01930	COG0425	Belongs to the sulfur carrier protein TusA family
BSR55_01955	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
BSR55_01955	COG0644	oxidoreductase
BSR55_01965	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BSR55_01980	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BSR55_02035	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BSR55_02065	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BSR55_02070	COG0254	rRNA binding
BSR55_02075	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BSR55_02085	COG0534	Mate efflux family protein
BSR55_02095	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BSR55_02105	COG1960	acyl-CoA dehydrogenase activity
BSR55_02130	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BSR55_02135	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BSR55_02150	COG0513	Belongs to the DEAD box helicase family
BSR55_02155	COG1127	ABC transporter
BSR55_02160	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BSR55_02165	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BSR55_02180	COG0598	Magnesium transport protein CorA
BSR55_02190	COG0494	nUDIX hydrolase
BSR55_02195	COG1040	competence protein
BSR55_02200	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BSR55_02210	COG2937	Belongs to the GPAT DAPAT family
BSR55_02215	COG1946	Acyl-CoA thioesterase
BSR55_02220	COG1301	dicarboxylic acid transport
BSR55_02235	COG1959	2 iron, 2 sulfur cluster binding
BSR55_02245	COG1017	nitric oxide dioxygenase activity
BSR55_02245	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BSR55_02250	COG0433	COG0433 Predicted ATPase
BSR55_02265	COG0051	transcription antitermination factor activity, RNA binding
BSR55_02270	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BSR55_02275	COG0088	Forms part of the polypeptide exit tunnel
BSR55_02290	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BSR55_02320	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BSR55_02330	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BSR55_02340	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BSR55_02355	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BSR55_02375	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BSR55_02380	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BSR55_02385	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BSR55_02390	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BSR55_02395	COG0202	RNA polymerase activity
BSR55_02400	COG0203	ribosomal protein L17
BSR55_02405	COG2072	flavoprotein involved in K transport
BSR55_02410	COG1960	acyl-CoA dehydrogenase activity
BSR55_02415	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BSR55_02455	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
BSR55_02460	COG0339	signal peptide processing
BSR55_02475	COG0557	exoribonuclease II activity
BSR55_02510	COG0765	amino acid transport
BSR55_02515	COG0765	amino acid transport
BSR55_02520	COG1126	abc transporter atp-binding protein
BSR55_02525	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BSR55_02530	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BSR55_02535	COG1733	regulation of RNA biosynthetic process
BSR55_02540	COG2814	Major facilitator Superfamily
BSR55_02565	COG0179	Fumarylacetoacetate (FAA) hydrolase
BSR55_02590	COG0697	spore germination
BSR55_02595	COG1295	ribonuclease BN
BSR55_02620	COG1946	Acyl-CoA thioesterase
BSR55_02655	COG3781	membrane
BSR55_02660	COG2003	Belongs to the UPF0758 family
BSR55_02665	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BSR55_02670	COG3783	Cytochrome b(562)
BSR55_02705	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BSR55_02715	COG1162	GTPase activity
BSR55_02720	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BSR55_02735	COG3501	Rhs element vgr protein
BSR55_02790	COG1538	Outer membrane efflux protein
BSR55_02795	COG0577	efflux transmembrane transporter activity
BSR55_02795	COG1136	(ABC) transporter
BSR55_02800	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR55_02825	COG0028	Belongs to the TPP enzyme family
BSR55_02830	COG0440	acetolactate synthase activity
BSR55_02835	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BSR55_02875	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BSR55_02880	COG1426	Protein conserved in bacteria
BSR55_02915	COG0004	ammonium transporteR
BSR55_02925	COG3622	Belongs to the hyi family
BSR55_02930	COG2084	Dehydrogenase
BSR55_02935	COG1024	Enoyl-CoA hydratase
BSR55_02940	COG5002	protein histidine kinase activity
BSR55_02940	COG2205	protein histidine kinase activity
BSR55_02940	COG0784	Response regulator, receiver
BSR55_02960	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BSR55_02975	COG3956	TIGRFAM MazG family protein
BSR55_02980	COG1555	photosystem II stabilization
BSR55_02990	COG0617	tRNA 3'-terminal CCA addition
BSR55_02995	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BSR55_03005	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BSR55_03010	COG1660	Displays ATPase and GTPase activities
BSR55_03015	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BSR55_03020	COG3028	Belongs to the UPF0307 family
BSR55_03030	COG2205	protein histidine kinase activity
BSR55_03035	COG0745	RESPONSE REGULATOR receiver
BSR55_03045	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BSR55_03070	COG2096	Adenosyltransferase
BSR55_03075	COG4206	TonB-dependent receptor
BSR55_03085	COG0133	tryptophan synthase activity
BSR55_03105	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BSR55_03115	COG3384	dioxygenase
BSR55_03155	COG1764	response to oxidative stress
BSR55_03160	COG1846	Transcriptional regulator
BSR55_03165	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BSR55_03180	COG2853	Lipoprotein
BSR55_03220	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BSR55_03220	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BSR55_03255	COG0489	protein tyrosine kinase activity
BSR55_03265	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BSR55_03325	COG0442	prolyl-tRNA aminoacylation
BSR55_03350	COG0840	transmembrane signaling receptor activity
BSR55_03370	COG3539	Fimbrial protein
BSR55_03380	COG3121	Chaperone
BSR55_03390	COG3539	Fimbrial protein
BSR55_03405	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BSR55_03420	COG0084	hydrolase, TatD family'
BSR55_03430	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BSR55_03450	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BSR55_03475	COG2186	Transcriptional regulator
BSR55_03480	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_03490	COG4948	Mandelate Racemase Muconate Lactonizing
BSR55_03500	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_03510	COG0738	Major facilitator superfamily
BSR55_03520	COG2188	Transcriptional regulator
BSR55_03535	COG0523	cobalamin synthesis protein
BSR55_03545	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_03550	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_03570	COG1609	Transcriptional regulator
BSR55_03575	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BSR55_03585	COG0154	amidase activity
BSR55_03610	COG2814	Major facilitator Superfamily
BSR55_03620	COG0789	Transcriptional regulator
BSR55_03640	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BSR55_03645	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BSR55_03650	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BSR55_03670	COG1862	Preprotein translocase
BSR55_03700	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BSR55_03730	COG0583	DNA-binding transcription factor activity
BSR55_03745	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_03750	COG0583	DNA-binding transcription factor activity
BSR55_03755	COG0277	FAD linked oxidase domain protein
BSR55_03755	COG0247	lactate metabolic process
BSR55_03760	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BSR55_03765	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_03770	COG5383	Protein conserved in bacteria
BSR55_03780	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BSR55_03785	COG5002	protein histidine kinase activity
BSR55_03790	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BSR55_03815	COG0438	transferase activity, transferring glycosyl groups
BSR55_03840	COG3306	glycosyltransferase involved in LPS biosynthesis
BSR55_03865	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BSR55_03915	COG1960	acyl-CoA dehydrogenase activity
BSR55_03920	COG1960	acyl-CoA dehydrogenase activity
BSR55_03930	COG0318	PFAM AMP-dependent synthetase and ligase
BSR55_03975	COG0625	glutathione transferase activity
BSR55_03990	COG1238	metal cluster binding
BSR55_04010	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BSR55_04015	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BSR55_04055	COG0072	phenylalanine-tRNA ligase activity
BSR55_04060	COG0776	regulation of translation
BSR55_04085	COG0248	Ppx GppA phosphatase
BSR55_04095	COG0037	tRNA processing
BSR55_04130	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BSR55_04145	COG0745	RESPONSE REGULATOR receiver
BSR55_04150	COG2205	protein histidine kinase activity
BSR55_04160	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BSR55_04180	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BSR55_04190	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BSR55_04195	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BSR55_04205	COG0713	ATP synthesis coupled electron transport
BSR55_04210	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BSR55_04215	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BSR55_04225	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BSR55_04240	COG0583	DNA-binding transcription factor activity
BSR55_04250	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BSR55_04260	COG2050	protein possibly involved in aromatic compounds catabolism
BSR55_04265	COG1566	PFAM secretion protein HlyD family protein
BSR55_04270	COG2814	Major facilitator Superfamily
BSR55_04295	COG5295	Hep Hag repeat protein
BSR55_04300	COG0306	phosphate transporter
BSR55_04315	COG0175	sulfate reduction
BSR55_04360	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BSR55_04375	COG2851	Citrate transporter
BSR55_04380	COG1253	flavin adenine dinucleotide binding
BSR55_04400	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BSR55_04405	COG2894	cell division
BSR55_04410	COG0850	regulation of cytokinetic process
BSR55_04420	COG0204	Acyl-transferase
BSR55_04425	COG2885	chlorophyll binding
BSR55_04435	COG0756	dUTP diphosphatase activity
BSR55_04440	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BSR55_04455	COG0121	glutamine amidotransferase
BSR55_04475	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BSR55_04480	COG0735	belongs to the Fur family
BSR55_04500	COG1968	undecaprenyl-diphosphatase activity
BSR55_04525	COG0420	3'-5' exonuclease activity
BSR55_04555	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BSR55_04565	COG0786	glutamate:sodium symporter activity
BSR55_04570	COG2059	Chromate
BSR55_04575	COG1752	Esterase of the alpha-beta hydrolase superfamily
BSR55_04580	COG1607	acyl-coa hydrolase
BSR55_04605	COG0523	cobalamin synthesis protein
BSR55_04610	COG4681	YaeQ
BSR55_04655	COG1649	PFAM Uncharacterised BCR, COG1649
BSR55_04655	COG0726	polysaccharide deacetylase
BSR55_04660	COG1215	transferase activity, transferring glycosyl groups
BSR55_04695	COG1309	transcriptional regulator
BSR55_04705	COG1024	Enoyl-CoA hydratase
BSR55_04720	COG4771	TonB-dependent receptor
BSR55_04760	COG1113	amino acid transport
BSR55_04765	COG2828	Protein conserved in bacteria
BSR55_04775	COG0142	geranyltranstransferase activity
BSR55_04780	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BSR55_04795	COG1752	Esterase of the alpha-beta hydrolase superfamily
BSR55_04810	COG2194	sulfuric ester hydrolase activity
BSR55_04815	COG0745	RESPONSE REGULATOR receiver
BSR55_04820	COG0642	Histidine kinase
BSR55_04835	COG0004	ammonium transporteR
BSR55_04855	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_04860	COG2852	Protein conserved in bacteria
BSR55_04865	COG0525	valine-tRNA ligase activity
BSR55_04875	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_04895	COG0393	Putative heavy-metal-binding
BSR55_04910	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR55_04915	COG0671	phosphoesterase, PA-phosphatase related
BSR55_04930	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BSR55_04940	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BSR55_04950	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BSR55_04955	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BSR55_04955	COG1648	precorrin-2 dehydrogenase activity
BSR55_04960	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BSR55_04980	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_04990	COG0531	amino acid
BSR55_05010	COG0321	lipoyl(octanoyl) transferase activity
BSR55_05015	COG2921	Belongs to the UPF0250 family
BSR55_05045	COG0586	Pfam SNARE associated Golgi protein
BSR55_05060	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BSR55_05080	COG0193	aminoacyl-tRNA hydrolase activity
BSR55_05085	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BSR55_05090	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BSR55_05120	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BSR55_05140	COG0358	DNA primase activity
BSR55_05150	COG0564	pseudouridine synthase activity
BSR55_05175	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BSR55_05180	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BSR55_05185	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BSR55_05245	COG0477	Major facilitator Superfamily
BSR55_05270	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
BSR55_05275	COG1597	lipid kinase activity
BSR55_05280	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BSR55_05290	COG0459	protein refolding
BSR55_05300	COG0584	glycerophosphoryl diester phosphodiesterase
BSR55_05305	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BSR55_05310	COG2239	Acts as a magnesium transporter
BSR55_05340	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BSR55_05345	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BSR55_05350	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BSR55_05370	COG1113	amino acid transport
BSR55_05380	COG0019	diaminopimelate decarboxylase activity
BSR55_05385	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BSR55_05405	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BSR55_05415	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
BSR55_05430	COG0596	Alpha beta hydrolase
BSR55_05435	COG0833	amino acid
BSR55_05445	COG0833	amino acid
BSR55_05455	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BSR55_05460	COG0418	dihydroorotase activity
BSR55_05480	COG0501	Belongs to the peptidase M48B family
BSR55_05485	COG0741	lytic transglycosylase activity
BSR55_05490	COG0037	tRNA processing
BSR55_05500	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
BSR55_05505	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BSR55_05515	COG0668	transmembrane transport
BSR55_05520	COG0625	glutathione transferase activity
BSR55_05525	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BSR55_05535	COG0583	DNA-binding transcription factor activity
BSR55_05540	COG2610	gluconate transmembrane transporter activity
BSR55_05545	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_05575	COG0583	DNA-binding transcription factor activity
BSR55_05590	COG1595	DNA-templated transcription, initiation
BSR55_05595	COG3712	iron ion homeostasis
BSR55_05615	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BSR55_05625	COG3501	Rhs element vgr protein
BSR55_05630	COG3209	COG3209 Rhs family protein
BSR55_05685	COG1414	Transcriptional regulator
BSR55_05690	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BSR55_05695	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BSR55_05700	COG0183	Belongs to the thiolase family
BSR55_05705	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BSR55_05710	COG0596	Alpha beta hydrolase
BSR55_05715	COG2271	Major facilitator Superfamily
BSR55_05720	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BSR55_05725	COG3485	protocatechuate 3,4-dioxygenase
BSR55_05730	COG3485	protocatechuate 3,4-dioxygenase
BSR55_05735	COG0710	3-dehydroquinate dehydratase activity
BSR55_05740	COG3420	alginic acid biosynthetic process
BSR55_05745	COG3659	wide pore channel activity
BSR55_05750	COG4993	Dehydrogenase
BSR55_05765	COG3188	usher protein
BSR55_05775	COG0583	DNA-binding transcription factor activity
BSR55_05785	COG0583	DNA-binding transcription factor activity
BSR55_05795	COG0789	Transcriptional regulator
BSR55_05815	COG2217	Heavy metal translocating P-type atpase
BSR55_05820	COG2205	protein histidine kinase activity
BSR55_05835	COG1923	regulation of RNA biosynthetic process
BSR55_05845	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BSR55_05850	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BSR55_05860	COG2205	protein histidine kinase activity
BSR55_05865	COG0745	RESPONSE REGULATOR receiver
BSR55_05880	COG2832	Protein of unknown function (DUF454)
BSR55_05890	COG1595	DNA-templated transcription, initiation
BSR55_05935	COG1629	transport
BSR55_06000	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BSR55_06095	COG5410	chromosome segregation
BSR55_06135	COG4387	Mu-like prophage protein GP36
BSR55_06290	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BSR55_06330	COG0006	proline dipeptidase activity
BSR55_06340	COG4771	TonB-dependent receptor
BSR55_06345	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BSR55_06350	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BSR55_06400	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BSR55_06405	COG0741	lytic transglycosylase activity
BSR55_06405	COG1388	LysM domain
BSR55_06410	COG4166	transmembrane transport
BSR55_06415	COG4174	ABC transporter (Permease)
BSR55_06420	COG4239	(ABC) transporter, permease
BSR55_06425	COG4172	Belongs to the ABC transporter superfamily
BSR55_06445	COG0024	Methionine aminopeptidase
BSR55_06450	COG0052	Belongs to the universal ribosomal protein uS2 family
BSR55_06455	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BSR55_06505	COG2951	lytic endotransglycosylase activity
BSR55_06510	COG0772	Belongs to the SEDS family
BSR55_06535	COG0842	Transport permease protein
BSR55_06540	COG1131	(ABC) transporter
BSR55_06550	COG0582	viral genome integration into host DNA
BSR55_06820	COG1476	TRANSCRIPTIONal
BSR55_06880	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BSR55_06895	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BSR55_06905	COG2233	PERMEase
BSR55_06915	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR55_06940	COG0612	Peptidase, M16
BSR55_06955	COG1720	tRNA m6t6A37 methyltransferase activity
BSR55_06960	COG3025	triphosphatase activity
BSR55_06975	COG0352	thiamine-phosphate diphosphorylase activity
BSR55_07020	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BSR55_07025	COG3111	PFAM Bacterial OB fold (BOF) protein
BSR55_07030	COG0745	RESPONSE REGULATOR receiver
BSR55_07035	COG0642	Histidine kinase
BSR55_07045	COG0494	nUDIX hydrolase
BSR55_07055	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BSR55_07060	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BSR55_07065	COG3139	Protein of unknown function (DUF1315)
BSR55_07075	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BSR55_07080	COG1301	dicarboxylic acid transport
BSR55_07085	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BSR55_07095	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BSR55_07100	COG3956	TIGRFAM MazG family protein
BSR55_07145	COG2267	carboxylic ester hydrolase activity
BSR55_07150	COG1869	D-ribose catabolic process
BSR55_07165	COG3938	Belongs to the proline racemase family
BSR55_07170	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BSR55_07180	COG0596	Alpha beta hydrolase
BSR55_07190	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_07210	COG2223	nitrite transmembrane transporter activity
BSR55_07215	COG0697	spore germination
BSR55_07225	COG1609	Transcriptional regulator
BSR55_07235	COG2318	DinB family
BSR55_07240	COG2070	2-Nitropropane dioxygenase
BSR55_07270	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
BSR55_07290	COG0450	alkyl hydroperoxide reductase
BSR55_07295	COG1643	Atp-dependent helicase
BSR55_07330	COG3210	domain, Protein
BSR55_07335	COG2831	hemolysin activation secretion protein
BSR55_07340	COG2188	Transcriptional regulator
BSR55_07360	COG1113	amino acid transport
BSR55_07370	COG0010	Belongs to the arginase family
BSR55_07375	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BSR55_07400	COG2072	flavoprotein involved in K transport
BSR55_07425	COG1136	(ABC) transporter
BSR55_07450	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BSR55_07460	COG0628	permease
BSR55_07500	COG3634	alkyl hydroperoxide reductase activity
BSR55_07505	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BSR55_07510	COG0583	DNA-binding transcription factor activity
BSR55_07515	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BSR55_07530	COG0640	Transcriptional regulator
BSR55_07535	COG0798	PFAM Bile acid sodium symporter
BSR55_07540	COG0789	Transcriptional regulator
BSR55_07585	COG1022	Amp-dependent synthetase and ligase
BSR55_07630	COG4772	TonB-dependent receptor
BSR55_07635	COG2801	Transposase and inactivated derivatives
BSR55_07650	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BSR55_07655	COG0076	glutamate decarboxylase activity
BSR55_07665	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BSR55_07700	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BSR55_07715	COG0642	Histidine kinase
BSR55_07720	COG0745	RESPONSE REGULATOR receiver
BSR55_07745	COG2995	paraquat-inducible protein a
BSR55_07750	COG3008	intermembrane lipid transfer
BSR55_07750	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BSR55_07780	COG0693	protein deglycase activity
BSR55_07800	COG5487	UPF0391 membrane protein
BSR55_07810	COG1309	transcriptional regulator
BSR55_07815	COG2814	Major facilitator Superfamily
BSR55_07830	COG0477	Major facilitator Superfamily
BSR55_07835	COG1309	transcriptional regulator
BSR55_07840	COG0604	alcohol dehydrogenase
BSR55_07840	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_07840	COG3321	synthase
BSR55_07860	COG1785	Belongs to the alkaline phosphatase family
BSR55_07865	COG2186	Transcriptional regulator
BSR55_07875	COG2271	Major facilitator Superfamily
BSR55_07880	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BSR55_07885	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_07895	COG0697	spore germination
BSR55_07900	COG2271	Major facilitator Superfamily
BSR55_07940	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BSR55_07945	COG2271	Major facilitator Superfamily
BSR55_07960	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BSR55_07970	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BSR55_07975	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BSR55_07980	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_07985	COG0277	FAD linked oxidase domain protein
BSR55_08005	COG1454	alcohol dehydrogenase
BSR55_08010	COG2610	gluconate transmembrane transporter activity
BSR55_08020	COG2814	Major facilitator Superfamily
BSR55_08025	COG2207	Transcriptional regulator
BSR55_08025	COG3708	Transcriptional regulator
BSR55_08035	COG1250	3-hydroxyacyl-CoA dehydrogenase
BSR55_08045	COG0154	amidase activity
BSR55_08070	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_08080	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR55_08130	COG0583	DNA-binding transcription factor activity
BSR55_08185	COG0477	Major facilitator Superfamily
BSR55_08195	COG2223	nitrite transmembrane transporter activity
BSR55_08205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR55_08215	COG1538	Outer membrane efflux protein
BSR55_08240	COG5001	Diguanylate cyclase
BSR55_08240	COG3300	MHYT domain
BSR55_08250	COG0556	nucleotide-excision repair
BSR55_08260	COG2962	Rard protein
BSR55_08295	COG0702	epimerase
BSR55_08300	COG1733	regulation of RNA biosynthetic process
BSR55_08315	COG2915	High frequency lysogenization protein hflD homolog
BSR55_08350	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BSR55_08355	COG1686	Belongs to the peptidase S11 family
BSR55_08370	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BSR55_08375	COG4942	peptidase
BSR55_08385	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BSR55_08390	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BSR55_08395	COG1067	ATP-dependent peptidase activity
BSR55_08435	COG1509	lysine 2,3-aminomutase activity
BSR55_08440	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BSR55_08445	COG1966	Carbon starvation protein
BSR55_08450	COG2879	small protein
BSR55_08460	COG0714	Associated with various cellular activities
BSR55_08490	COG4771	TonB-dependent receptor
BSR55_08525	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BSR55_08540	COG2252	PERMEase
BSR55_08545	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BSR55_08555	COG3038	cytochrome b561
BSR55_08565	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BSR55_08575	COG0527	aspartate kinase activity
BSR55_08595	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BSR55_08625	COG2801	Transposase and inactivated derivatives
BSR55_08630	COG1522	sequence-specific DNA binding
BSR55_08635	COG1335	isochorismatase
BSR55_08650	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BSR55_08670	COG0667	Aldo Keto reductase
BSR55_08680	COG1765	OsmC-like protein
BSR55_08690	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BSR55_08695	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BSR55_08705	COG1045	serine acetyltransferase
BSR55_08715	COG0542	response to heat
BSR55_08770	COG0540	Belongs to the ATCase OTCase family
BSR55_08795	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BSR55_08805	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BSR55_08815	COG0583	DNA-binding transcription factor activity
BSR55_08835	COG3340	Belongs to the peptidase S51 family
BSR55_08870	COG1309	transcriptional regulator
BSR55_08885	COG0204	Acyl-transferase
BSR55_08905	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BSR55_08915	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BSR55_08935	COG0477	Major facilitator Superfamily
BSR55_08940	COG0729	surface antigen
BSR55_08955	COG0318	PFAM AMP-dependent synthetase and ligase
BSR55_08975	COG4783	chaperone-mediated protein folding
BSR55_08990	COG1610	YqeY-like protein
BSR55_08995	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BSR55_09020	COG0436	Aminotransferase
BSR55_09025	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BSR55_09030	COG0386	Belongs to the glutathione peroxidase family
BSR55_09035	COG2207	Transcriptional regulator
BSR55_09035	COG1917	Cupin 2, conserved barrel domain protein
BSR55_09060	COG1278	Cold shock
BSR55_09080	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BSR55_09100	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
BSR55_09135	COG3501	Rhs element vgr protein
BSR55_09155	COG0012	GTP binding
BSR55_09160	COG2011	ABC-type metal ion transport system permease component
BSR55_09165	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BSR55_09170	COG1464	Belongs to the NlpA lipoprotein family
BSR55_09175	COG1464	Belongs to the NlpA lipoprotein family
BSR55_09240	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BSR55_09265	COG2707	UPF0756 membrane protein
BSR55_09270	COG1959	2 iron, 2 sulfur cluster binding
BSR55_09275	COG0492	ferredoxin-NADP+ reductase activity
BSR55_09280	COG1187	pseudouridine synthase activity
BSR55_09300	COG0802	atpase or kinase
BSR55_09305	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BSR55_09315	COG1923	regulation of RNA biosynthetic process
BSR55_09320	COG3501	Rhs element vgr protein
BSR55_09345	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BSR55_09355	COG3178	'Phosphotransferase
BSR55_09360	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BSR55_09370	COG1192	Involved in chromosome partitioning
BSR55_09375	COG1475	DNA binding
BSR55_09380	COG0811	peptide transport
BSR55_09390	COG1132	(ABC) transporter
BSR55_09395	COG1663	tetraacyldisaccharide 4'-kinase activity
BSR55_09415	COG0084	hydrolase, TatD family'
BSR55_09440	COG3156	type II secretion system protein K
BSR55_09450	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BSR55_09460	COG0590	tRNA wobble adenosine to inosine editing
BSR55_09470	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BSR55_09480	COG0776	regulation of translation
BSR55_09505	COG0284	orotidine-5'-phosphate decarboxylase activity
BSR55_09510	COG2431	L-lysine efflux transmembrane transporter activity
BSR55_09525	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BSR55_09530	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BSR55_09535	COG0569	domain protein
BSR55_09550	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BSR55_09555	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BSR55_09590	COG3706	GGDEF domain
BSR55_09605	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BSR55_09610	COG0542	response to heat
BSR55_09615	COG2755	lipolytic protein G-D-S-L family
BSR55_09615	COG0657	acetylesterase activity
BSR55_09640	COG0583	DNA-binding transcription factor activity
BSR55_09645	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BSR55_09655	COG0583	DNA-binding transcription factor activity
BSR55_09660	COG1960	acyl-CoA dehydrogenase activity
BSR55_09665	COG2814	Major facilitator Superfamily
BSR55_09670	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BSR55_09705	COG0372	Belongs to the citrate synthase family
BSR55_09710	COG3433	isochorismatase activity
BSR55_09710	COG1535	isochorismatase
BSR55_09730	COG0069	glutamate synthase activity
BSR55_09740	COG2850	peptidyl-arginine hydroxylation
BSR55_09745	COG0424	maF-like protein
BSR55_09755	COG0126	phosphoglycerate kinase activity
BSR55_09780	COG3196	Protein conserved in bacteria
BSR55_09805	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BSR55_09815	COG0702	epimerase
BSR55_09820	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BSR55_09850	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BSR55_09880	COG0316	Belongs to the HesB IscA family
BSR55_09885	COG0822	iron-sulfur transferase activity
BSR55_09895	COG1959	2 iron, 2 sulfur cluster binding
BSR55_09910	COG0776	regulation of translation
BSR55_09920	COG2207	Transcriptional regulator
BSR55_09925	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BSR55_09935	COG3501	Rhs element vgr protein
BSR55_09985	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
BSR55_10035	COG2203	Gaf domain
BSR55_10035	COG2199	diguanylate cyclase activity
BSR55_10095	COG1570	exodeoxyribonuclease VII activity
BSR55_10105	COG1278	Cold shock
BSR55_10135	COG1278	Cold shock
BSR55_10165	COG5410	chromosome segregation
BSR55_10210	COG4387	Mu-like prophage protein GP36
BSR55_10320	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BSR55_10330	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BSR55_10355	COG1733	regulation of RNA biosynthetic process
BSR55_10375	COG1960	acyl-CoA dehydrogenase activity
BSR55_10380	COG2207	Transcriptional regulator
BSR55_10395	COG1271	oxidase subunit
BSR55_10400	COG1294	oxidase, subunit
BSR55_10415	COG2076	Multidrug Resistance protein
BSR55_10435	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BSR55_10450	COG3152	Membrane
BSR55_10455	COG3501	Rhs element vgr protein
BSR55_10475	COG0583	DNA-binding transcription factor activity
BSR55_10525	COG0697	spore germination
BSR55_10530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BSR55_10540	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BSR55_10545	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BSR55_10590	COG0488	(ABC) transporter
BSR55_10595	COG1448	Aminotransferase
BSR55_10600	COG0596	Alpha beta hydrolase
BSR55_10605	COG0697	spore germination
BSR55_10620	COG2814	Major facilitator Superfamily
BSR55_10625	COG1346	cytolysis
BSR55_10630	COG1380	Effector of murein hydrolase LrgA
BSR55_10635	COG0583	DNA-binding transcription factor activity
BSR55_10675	COG1522	sequence-specific DNA binding
BSR55_10685	COG1024	Enoyl-CoA hydratase
BSR55_10690	COG1960	acyl-CoA dehydrogenase activity
BSR55_10700	COG2814	Major facilitator Superfamily
BSR55_10710	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BSR55_10720	COG2814	Major facilitator Superfamily
BSR55_10725	COG1960	acyl-CoA dehydrogenase activity
BSR55_10730	COG1024	Enoyl-CoA hydratase
BSR55_10735	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_10740	COG1250	3-hydroxyacyl-CoA dehydrogenase
BSR55_10745	COG0183	Belongs to the thiolase family
BSR55_10755	COG2814	Major facilitator Superfamily
BSR55_10765	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BSR55_10770	COG1960	acyl-CoA dehydrogenase activity
BSR55_10775	COG2814	Major facilitator Superfamily
BSR55_10780	COG0644	oxidoreductase
BSR55_10780	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
BSR55_10790	COG1115	amino acid carrier protein
BSR55_10800	COG3938	Belongs to the proline racemase family
BSR55_10810	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BSR55_10815	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BSR55_10820	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_10825	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_10850	COG4774	siderophore transport
BSR55_10860	COG2207	Transcriptional regulator
BSR55_10865	COG1881	PFAM PEBP family protein
BSR55_10880	COG0477	Major facilitator Superfamily
BSR55_10890	COG1024	Enoyl-CoA hydratase
BSR55_10895	COG1960	acyl-CoA dehydrogenase activity
BSR55_10900	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BSR55_10935	COG1944	ATP diphosphatase activity
BSR55_10950	COG0583	DNA-binding transcription factor activity
BSR55_10955	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BSR55_10960	COG4266	Belongs to the allantoicase family
BSR55_10965	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
BSR55_10975	COG2351	hydroxyisourate hydrolase activity
BSR55_11010	COG1388	LysM domain
BSR55_11015	COG0804	urea catabolic process
BSR55_11035	COG0829	nickel cation binding
BSR55_11045	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
BSR55_11050	COG0830	nickel cation binding
BSR55_11060	COG0589	response to stress
BSR55_11110	COG1960	acyl-CoA dehydrogenase activity
BSR55_11115	COG1960	acyl-CoA dehydrogenase activity
BSR55_11135	COG0509	glycine decarboxylation via glycine cleavage system
BSR55_11140	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BSR55_11145	COG3300	MHYT domain
BSR55_11145	COG5001	Diguanylate cyclase
BSR55_11175	COG0640	Transcriptional regulator
BSR55_11195	COG3122	Protein conserved in bacteria
BSR55_11210	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BSR55_11225	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BSR55_11245	COG2223	nitrite transmembrane transporter activity
BSR55_11290	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BSR55_11295	COG2267	carboxylic ester hydrolase activity
BSR55_11300	COG2453	phosphatase
BSR55_11300	COG0671	phosphoesterase, PA-phosphatase related
BSR55_11315	COG4589	Belongs to the CDS family
BSR55_11355	COG3501	Rhs element vgr protein
BSR55_11370	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BSR55_11375	COG2937	Belongs to the GPAT DAPAT family
BSR55_11380	COG0596	Alpha beta hydrolase
BSR55_11380	COG2226	methyltransferase
BSR55_11380	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BSR55_11385	COG1309	transcriptional regulator
BSR55_11415	COG0667	Aldo Keto reductase
BSR55_11420	COG0583	DNA-binding transcription factor activity
BSR55_11470	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BSR55_11475	COG0772	Belongs to the SEDS family
BSR55_11485	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BSR55_11495	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BSR55_11520	COG1902	pentaerythritol trinitrate reductase activity
BSR55_11520	COG0446	pyridine nucleotide-disulphide oxidoreductase
BSR55_11540	COG2814	Major facilitator Superfamily
BSR55_11545	COG0583	DNA-binding transcription factor activity
BSR55_11555	COG4638	Rieske (2fe-2S)
BSR55_11560	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
BSR55_11565	COG0633	Ferredoxin
BSR55_11565	COG0543	2 iron, 2 sulfur cluster binding
BSR55_11570	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_11575	COG3135	benzoate transporter
BSR55_11595	COG3179	chitinase
BSR55_11605	COG0477	Major facilitator Superfamily
BSR55_11625	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BSR55_11635	COG1027	Aspartate ammonia-lyase
BSR55_11640	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BSR55_11650	COG0506	proline dehydrogenase activity
BSR55_11650	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BSR55_11650	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BSR55_11685	COG0308	aminopeptidase N
BSR55_11700	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BSR55_11715	COG1846	Transcriptional regulator
BSR55_11755	COG0511	ligase activity, forming carbon-carbon bonds
BSR55_11760	COG0439	Biotin carboxylase
BSR55_11780	COG0730	response to heat
BSR55_11785	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BSR55_11805	COG1218	3'(2'),5'-bisphosphate nucleotidase
BSR55_11815	COG1011	Hydrolase
BSR55_11820	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BSR55_11825	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BSR55_11830	COG4221	oxidoreductase activity
BSR55_11835	COG0318	PFAM AMP-dependent synthetase and ligase
BSR55_11840	COG2137	regulation of response to DNA damage stimulus
BSR55_11865	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BSR55_11875	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BSR55_11900	COG0575	Belongs to the CDS family
BSR55_11905	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BSR55_11910	COG0233	cytoplasmic translational termination
BSR55_11925	COG3852	Histidine kinase
BSR55_11940	COG3753	Protein conserved in bacteria
BSR55_11955	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BSR55_11960	COG4773	Receptor
BSR55_11985	COG1132	(ABC) transporter
BSR55_11990	COG1846	Transcriptional regulator
BSR55_12010	COG2153	protein acetylation
BSR55_12015	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BSR55_12030	COG2249	NAD(P)H dehydrogenase (quinone) activity
BSR55_12045	COG1294	oxidase, subunit
BSR55_12050	COG4890	Cyd operon protein YbgT
BSR55_12105	COG2194	sulfuric ester hydrolase activity
BSR55_12110	COG2119	membrane
BSR55_12115	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BSR55_12135	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BSR55_12145	COG3135	benzoate transporter
BSR55_12150	COG0024	Methionine aminopeptidase
BSR55_12155	COG1114	Component of the transport system for branched-chain amino acids
BSR55_12175	COG1253	flavin adenine dinucleotide binding
BSR55_12195	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BSR55_12205	COG0552	protein localization to endoplasmic reticulum
BSR55_12210	COG0612	Peptidase, M16
BSR55_12240	COG0517	IMP dehydrogenase activity
BSR55_12240	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BSR55_12250	COG0133	tryptophan synthase activity
BSR55_12260	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BSR55_12280	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BSR55_12310	COG0537	adenosine 5'-monophosphoramidase activity
BSR55_12375	COG1454	alcohol dehydrogenase
BSR55_12385	COG0824	Thioesterase
BSR55_12430	COG0183	Belongs to the thiolase family
BSR55_12440	COG1454	alcohol dehydrogenase
BSR55_12455	COG3284	Transcriptional regulator
BSR55_12475	COG0583	DNA-binding transcription factor activity
BSR55_12495	COG1309	transcriptional regulator
BSR55_12500	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BSR55_12500	COG0519	Catalyzes the synthesis of GMP from XMP
BSR55_12505	COG3042	response to heat
BSR55_12515	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BSR55_12525	COG2353	YceI-like domain
BSR55_12540	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BSR55_12545	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BSR55_12560	COG1280	lysine exporter protein (LysE YggA)
BSR55_12590	COG1254	Belongs to the acylphosphatase family
BSR55_12595	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BSR55_12595	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BSR55_12625	COG0167	dihydroorotate dehydrogenase activity
BSR55_12650	COG0778	Nitroreductase
BSR55_12660	COG0513	Belongs to the DEAD box helicase family
BSR55_12680	COG2363	Small membrane protein
BSR55_12710	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
BSR55_12715	COG2249	NAD(P)H dehydrogenase (quinone) activity
BSR55_12725	COG0659	secondary active sulfate transmembrane transporter activity
BSR55_12735	COG4585	Histidine kinase
BSR55_12745	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BSR55_12750	COG1960	acyl-CoA dehydrogenase activity
BSR55_12785	COG3781	membrane
BSR55_12790	COG2890	protein-(glutamine-N5) methyltransferase activity
BSR55_12815	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BSR55_12820	COG4682	membrane
BSR55_12850	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BSR55_12855	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BSR55_12860	COG1845	cytochrome c oxidase, subunit III
BSR55_12865	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BSR55_12870	COG0109	protoheme IX farnesyltransferase activity
BSR55_12890	COG0360	Binds together with S18 to 16S ribosomal RNA
BSR55_12895	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BSR55_12905	COG0305	Participates in initiation and elongation during chromosome replication
BSR55_12915	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BSR55_12935	COG1305	Transglutaminase-like
BSR55_12945	COG2308	Evidence 4 Homologs of previously reported genes of
BSR55_12985	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BSR55_12990	COG0138	bifunctional purine biosynthesis protein purh
BSR55_12995	COG0151	Belongs to the GarS family
BSR55_13005	COG2801	Transposase and inactivated derivatives
BSR55_13015	COG1464	Belongs to the NlpA lipoprotein family
BSR55_13020	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BSR55_13025	COG2011	ABC-type metal ion transport system permease component
BSR55_13035	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BSR55_13380	COG3022	response to hydroperoxide
BSR55_13390	COG4650	regulator
BSR55_13395	COG1234	tRNA 3'-trailer cleavage
BSR55_13415	COG1690	Belongs to the RtcB family
BSR55_13430	COG0430	RNA-3'-phosphate cyclase activity
BSR55_13450	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BSR55_13460	COG0693	protein deglycase activity
BSR55_13470	COG1960	acyl-CoA dehydrogenase activity
BSR55_13475	COG0616	signal peptide processing
BSR55_13480	COG1301	dicarboxylic acid transport
BSR55_13485	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BSR55_13495	COG0573	inorganic phosphate transmembrane transporter activity
BSR55_13630	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BSR55_13640	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BSR55_13645	COG0517	IMP dehydrogenase activity
BSR55_13645	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BSR55_13655	COG0427	acetyl-CoA hydrolase
BSR55_13660	COG0183	Belongs to the thiolase family
BSR55_13665	COG1960	acyl-CoA dehydrogenase activity
BSR55_13715	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BSR55_13735	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR55_13750	COG1301	dicarboxylic acid transport
BSR55_13770	COG0047	phosphoribosylformylglycinamidine synthase activity
BSR55_13770	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BSR55_13805	COG4771	TonB-dependent receptor
BSR55_13825	COG0824	Thioesterase
BSR55_13855	COG0823	Involved in the tonB-independent uptake of proteins
BSR55_13880	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BSR55_13965	COG0512	Glutamine amidotransferase of anthranilate synthase
BSR55_13970	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BSR55_14025	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_14030	COG1960	acyl-CoA dehydrogenase activity
BSR55_14040	COG4303	Ethanolamine ammonia lyase large subunit
BSR55_14045	COG0531	amino acid
BSR55_14065	COG3739	integral membrane protein
BSR55_14080	COG1741	Belongs to the pirin family
BSR55_14085	COG0235	Class ii aldolase
BSR55_14095	COG2233	PERMEase
BSR55_14100	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR55_14105	COG0251	oxidation-reduction process
BSR55_14110	COG1335	isochorismatase
BSR55_14115	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BSR55_14125	COG0596	Alpha beta hydrolase
BSR55_14145	COG1116	anion transmembrane transporter activity
BSR55_14175	COG0864	Transcriptional regulator
BSR55_14180	COG1733	regulation of RNA biosynthetic process
BSR55_14185	COG2249	NAD(P)H dehydrogenase (quinone) activity
BSR55_14190	COG0439	Biotin carboxylase
BSR55_14210	COG0583	DNA-binding transcription factor activity
BSR55_14215	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BSR55_14225	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BSR55_14230	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BSR55_14235	COG4149	molybdate abc transporter
BSR55_14240	COG0725	ABC transporter, periplasmic molybdate-binding protein
BSR55_14245	COG0303	'Molybdopterin
BSR55_14250	COG0315	cyclic pyranopterin monophosphate synthase activity
BSR55_14250	COG0521	Mo-molybdopterin cofactor biosynthetic process
BSR55_14255	COG0314	molybdopterin synthase activity
BSR55_14265	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BSR55_14275	COG0243	molybdopterin cofactor binding
BSR55_14280	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BSR55_14285	COG2146	nitrite reductase [NAD(P)H] activity
BSR55_14285	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BSR55_14290	COG2223	nitrite transmembrane transporter activity
BSR55_14300	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BSR55_14300	COG1116	anion transmembrane transporter activity
BSR55_14305	COG2957	Belongs to the agmatine deiminase family
BSR55_14310	COG0531	amino acid
BSR55_14320	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BSR55_14345	COG1846	Transcriptional regulator
BSR55_14390	COG3121	Chaperone
BSR55_14395	COG3539	Fimbrial protein
BSR55_14415	COG1113	amino acid transport
BSR55_14430	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_14435	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BSR55_14515	COG2072	flavoprotein involved in K transport
BSR55_14535	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BSR55_14540	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_14545	COG1063	alcohol dehydrogenase
BSR55_14560	COG1172	Belongs to the binding-protein-dependent transport system permease family
BSR55_14565	COG1129	ABC transporter
BSR55_14575	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BSR55_14585	COG0546	phosphoglycolate phosphatase activity
BSR55_14595	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_14605	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BSR55_14610	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_14620	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BSR55_14715	COG3210	domain, Protein
BSR55_14715	COG3210	domain, Protein
BSR55_14720	COG2831	hemolysin activation secretion protein
BSR55_14740	COG0446	pyridine nucleotide-disulphide oxidoreductase
BSR55_14740	COG1902	pentaerythritol trinitrate reductase activity
BSR55_14750	COG0277	FAD linked oxidase domain protein
BSR55_14760	COG2186	Transcriptional regulator
BSR55_14770	COG0697	spore germination
BSR55_14775	COG0583	DNA-binding transcription factor activity
BSR55_14805	COG1187	pseudouridine synthase activity
BSR55_14815	COG1960	acyl-CoA dehydrogenase activity
BSR55_14855	COG0154	amidase activity
BSR55_14875	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BSR55_14880	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BSR55_14885	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BSR55_14895	COG0281	malic enzyme
BSR55_14895	COG0280	phosphate acetyltransferase
BSR55_14935	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
BSR55_14940	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BSR55_14945	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BSR55_14960	COG2351	hydroxyisourate hydrolase activity
BSR55_14970	COG1686	Belongs to the peptidase S11 family
BSR55_14975	COG1252	NADH dehydrogenase
BSR55_14980	COG1047	Peptidyl-prolyl cis-trans
BSR55_14985	COG0415	Belongs to the DNA photolyase family
BSR55_15000	COG0583	DNA-binding transcription factor activity
BSR55_15005	COG0251	oxidation-reduction process
BSR55_15015	COG0667	Aldo Keto reductase
BSR55_15025	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BSR55_15040	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BSR55_15045	COG0571	ribonuclease III activity
BSR55_15070	COG0463	Glycosyl transferase, family 2
BSR55_15075	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
BSR55_15080	COG0671	phosphoesterase, PA-phosphatase related
BSR55_15090	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BSR55_15130	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BSR55_15135	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BSR55_15140	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BSR55_15150	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BSR55_15155	COG4208	sulfate ABC transporter
BSR55_15160	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BSR55_15165	COG0583	DNA-binding transcription factor activity
BSR55_15185	COG0602	queuosine metabolic process
BSR55_15190	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BSR55_15205	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BSR55_15215	COG0583	DNA-binding transcription factor activity
BSR55_15240	COG0625	glutathione transferase activity
BSR55_15255	COG1051	belongs to the nudix hydrolase family
BSR55_15255	COG1056	cytidyltransferase-related domain
BSR55_15260	COG1024	Enoyl-CoA hydratase
BSR55_15265	COG0778	Nitroreductase
BSR55_15270	COG3323	Protein of unknown function (DUF1653)
BSR55_15270	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BSR55_15315	COG1280	lysine exporter protein (LysE YggA)
BSR55_15320	COG1522	sequence-specific DNA binding
BSR55_15365	COG2234	aminopeptidase activity
BSR55_15375	COG3384	dioxygenase
BSR55_15390	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BSR55_15395	COG2878	Part of a membrane complex involved in electron transport
BSR55_15400	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BSR55_15430	COG0768	penicillin binding
BSR55_15435	COG0742	ribosomal rna small subunit methyltransferase
BSR55_15455	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_15460	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BSR55_15470	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BSR55_15485	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BSR55_15490	COG1053	succinate dehydrogenase
BSR55_15495	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BSR55_15500	COG2009	succinate dehydrogenase
BSR55_15510	COG3104	oligopeptide transport
BSR55_15535	COG2072	flavoprotein involved in K transport
BSR55_15540	COG0300	oxidoreductase activity
BSR55_15570	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BSR55_15570	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BSR55_15600	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BSR55_15605	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BSR55_15610	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BSR55_15635	COG0505	Belongs to the CarA family
BSR55_15640	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BSR55_15650	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
BSR55_15660	COG1113	amino acid transport
BSR55_15670	COG0625	glutathione transferase activity
BSR55_15685	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BSR55_15705	COG1024	Enoyl-CoA hydratase
BSR55_15730	COG2321	neutral zinc metallopeptidase
BSR55_15735	COG2354	Protein conserved in bacteria
BSR55_15765	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BSR55_15770	COG1773	rubredoxin
BSR55_15775	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BSR55_15785	COG0583	DNA-binding transcription factor activity
BSR55_15825	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BSR55_15835	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BSR55_15840	COG4181	ATPase activity
BSR55_15895	COG0560	Phosphoserine phosphatase
BSR55_15910	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BSR55_15915	COG1530	ribonuclease E activity
BSR55_15920	COG0424	maF-like protein
BSR55_15925	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BSR55_15930	COG1792	Involved in formation and maintenance of cell shape
BSR55_15935	COG1077	Cell shape determining protein MreB Mrl
BSR55_15940	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BSR55_15950	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BSR55_15985	COG2318	DinB family
BSR55_16005	COG3590	peptidase
BSR55_16010	COG0583	DNA-binding transcription factor activity
BSR55_16040	COG0583	DNA-binding transcription factor activity
BSR55_16045	COG4948	Mandelate Racemase Muconate Lactonizing
BSR55_16050	COG4829	muconolactone delta-isomerase
BSR55_16060	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BSR55_16065	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BSR55_16070	COG0183	Belongs to the thiolase family
BSR55_16075	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BSR55_16110	COG2871	sodium ion transport
BSR55_16125	COG0789	Transcriptional regulator
BSR55_16145	COG4221	oxidoreductase activity
BSR55_16150	COG1902	pentaerythritol trinitrate reductase activity
BSR55_16150	COG0446	pyridine nucleotide-disulphide oxidoreductase
BSR55_16160	COG0523	cobalamin synthesis protein
BSR55_16175	COG3539	Fimbrial protein
BSR55_16185	COG3121	Chaperone
BSR55_16205	COG3539	Fimbrial protein
BSR55_16220	COG3539	Fimbrial protein
BSR55_16230	COG3121	Chaperone
BSR55_16250	COG2207	Transcriptional regulator
BSR55_16265	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_16270	COG4638	Rieske (2fe-2S)
BSR55_16285	COG0473	3-isopropylmalate dehydrogenase activity
BSR55_16290	COG0583	DNA-binding transcription factor activity
BSR55_16305	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BSR55_16310	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BSR55_16325	COG1063	alcohol dehydrogenase
BSR55_16335	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BSR55_16340	COG0508	dehydrogenase complex catalyzes the overall conversion of
BSR55_16345	COG0022	dehydrogenase e1 component
BSR55_16350	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BSR55_16355	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BSR55_16365	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BSR55_16370	COG3135	benzoate transporter
BSR55_16380	COG5002	protein histidine kinase activity
BSR55_16390	COG0745	RESPONSE REGULATOR receiver
BSR55_16395	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR55_16400	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BSR55_16450	COG3209	COG3209 Rhs family protein
BSR55_16515	COG0505	Belongs to the CarA family
BSR55_16520	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BSR55_16530	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BSR55_16535	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BSR55_16540	COG3706	GGDEF domain
BSR55_16560	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BSR55_16565	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_16575	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BSR55_16580	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_16585	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BSR55_16590	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR55_16595	COG2267	carboxylic ester hydrolase activity
BSR55_16615	COG4774	siderophore transport
BSR55_16620	COG4607	ABC-type enterochelin transport system periplasmic component
BSR55_16625	COG4604	ABC transporter, ATP-binding protein
BSR55_16630	COG4605	iron ion homeostasis
BSR55_16635	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BSR55_16660	COG0789	Transcriptional regulator
BSR55_16675	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BSR55_16680	COG2771	luxR family
BSR55_16700	COG1733	regulation of RNA biosynthetic process
BSR55_16705	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BSR55_16710	COG1414	Transcriptional regulator
BSR55_16725	COG2985	domain, Protein
BSR55_16740	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BSR55_16750	COG0431	NADPH-dependent FMN reductase
BSR55_16755	COG0798	PFAM Bile acid sodium symporter
BSR55_16765	COG0640	Transcriptional regulator
BSR55_16790	COG1595	DNA-templated transcription, initiation
BSR55_16800	COG3220	belongs to the UPF0276 family
BSR55_16825	COG4308	Limonene-1,2-epoxide hydrolase catalytic domain
BSR55_16860	COG4774	siderophore transport
BSR55_16945	COG0582	viral genome integration into host DNA
BSR55_16955	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BSR55_16960	COG0242	peptide deformylase activity
BSR55_16970	COG0477	Major facilitator Superfamily
BSR55_16975	COG3706	GGDEF domain
BSR55_16990	COG1585	Membrane protein implicated in regulation of membrane protease activity
BSR55_16995	COG2268	Band 7 protein
BSR55_17005	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BSR55_17010	COG1309	transcriptional regulator
BSR55_17045	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BSR55_17050	COG0523	cobalamin synthesis protein
BSR55_17065	COG0204	Acyl-transferase
BSR55_17080	COG1280	lysine exporter protein (LysE YggA)
BSR55_17085	COG1674	ftsk spoiiie
BSR55_17085	COG0531	amino acid
BSR55_17090	COG0492	ferredoxin-NADP+ reductase activity
BSR55_17095	COG0500	methyltransferase
BSR55_17100	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BSR55_17110	COG0456	acetyltransferase
BSR55_17140	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BSR55_17150	COG0714	Associated with various cellular activities
BSR55_17160	COG3552	Protein containing von Willebrand factor type A (VWA) domain
BSR55_17170	COG3831	ATPase activity
BSR55_17225	COG1113	amino acid transport
BSR55_17230	COG0251	oxidation-reduction process
BSR55_17260	COG0351	phosphomethylpyrimidine kinase
BSR55_17260	COG0352	thiamine-phosphate diphosphorylase activity
BSR55_17260	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BSR55_17275	COG1280	lysine exporter protein (LysE YggA)
BSR55_17280	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BSR55_17285	COG2076	Multidrug Resistance protein
BSR55_17305	COG2132	Multicopper oxidase
BSR55_17315	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BSR55_17325	COG4269	membrane
BSR55_17330	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BSR55_17345	COG1968	undecaprenyl-diphosphatase activity
BSR55_17350	COG1214	PFAM Peptidase M22, glycoprotease
BSR55_17355	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BSR55_17360	COG0494	nUDIX hydrolase
BSR55_17410	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BSR55_17420	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BSR55_17445	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BSR55_17450	COG0765	amino acid transport
BSR55_17455	COG0765	amino acid transport
BSR55_17460	COG1126	abc transporter atp-binding protein
BSR55_17485	COG4716	Myosin-crossreactive antigen
BSR55_17500	COG2226	methyltransferase
BSR55_17515	COG1309	transcriptional regulator
BSR55_17530	COG2515	1-aminocyclopropane-1-carboxylate deaminase
BSR55_17535	COG2081	HI0933 family
BSR55_17540	COG0668	transmembrane transport
BSR55_17555	COG2814	Major facilitator Superfamily
BSR55_17560	COG1289	transmembrane transporter activity
BSR55_17570	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BSR55_17625	COG2832	Protein of unknown function (DUF454)
BSR55_17645	COG0793	Belongs to the peptidase S41A family
BSR55_17670	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BSR55_17675	COG0280	phosphate acetyltransferase
BSR55_17675	COG0857	belongs to the CobB CobQ family
BSR55_17725	COG0740	serine-type endopeptidase activity
BSR55_17735	COG4774	siderophore transport
BSR55_17740	COG4774	siderophore transport
BSR55_17745	COG3128	pkhd-type hydroxylase
BSR55_17755	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BSR55_17765	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BSR55_17765	COG2813	Specifically methylates the guanine in position
BSR55_17790	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BSR55_17805	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BSR55_17845	COG3878	Protein conserved in bacteria
BSR55_17850	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BSR55_17910	COG2199	diguanylate cyclase activity
BSR55_17945	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
BSR55_17960	COG0450	alkyl hydroperoxide reductase
BSR55_17965	COG1652	LysM domain
BSR55_17970	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BSR55_17975	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_17990	COG1399	metal-binding, possibly nucleic acid-binding protein
BSR55_17995	COG3101	peptidyl-lysine hydroxylation
BSR55_18000	COG0009	L-threonylcarbamoyladenylate synthase
BSR55_18005	COG3713	MltA-interacting MipA family protein
BSR55_18025	COG0285	dihydrofolate synthase activity
BSR55_18030	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BSR55_18090	COG0183	Belongs to the thiolase family
BSR55_18100	COG0456	acetyltransferase
BSR55_18105	COG3422	double-strand break repair
BSR55_18120	COG4106	trans-aconitate 2-methyltransferase activity
BSR55_18135	COG2267	carboxylic ester hydrolase activity
BSR55_18145	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BSR55_18155	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BSR55_18170	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BSR55_18180	COG1196	nuclear chromosome segregation
BSR55_18190	COG0730	response to heat
BSR55_18210	COG3545	Serine hydrolase
BSR55_18215	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BSR55_18235	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BSR55_18295	COG3501	Rhs element vgr protein
BSR55_18320	COG1011	Hydrolase
BSR55_18325	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BSR55_18345	COG1272	protein, Hemolysin III
BSR55_18350	COG0477	Major facilitator Superfamily
BSR55_18355	COG0564	pseudouridine synthase activity
BSR55_18365	COG1024	Enoyl-CoA hydratase
BSR55_18370	COG1960	acyl-CoA dehydrogenase activity
BSR55_18375	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BSR55_18380	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_18410	COG1960	acyl-CoA dehydrogenase activity
BSR55_18415	COG1960	acyl-CoA dehydrogenase activity
BSR55_18420	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BSR55_18465	COG1183	phosphatidylcholine synthase activity
BSR55_18470	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BSR55_18490	COG0039	L-malate dehydrogenase activity
BSR55_18500	COG1196	nuclear chromosome segregation
BSR55_18500	COG0741	lytic transglycosylase activity
BSR55_18500	COG0739	heme binding
BSR55_18505	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BSR55_18510	COG1702	phosphate starvation-inducible protein PhoH
BSR55_18520	COG0613	PHP domain protein
BSR55_18530	COG2350	Protein conserved in bacteria
BSR55_18545	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BSR55_18550	COG1666	GTP binding
BSR55_18565	COG1607	acyl-coa hydrolase
BSR55_18580	COG3453	Protein conserved in bacteria
BSR55_18580	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BSR55_18610	COG0788	formyltetrahydrofolate deformylase activity
BSR55_18625	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BSR55_18630	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BSR55_18635	COG4651	solute:proton antiporter activity
BSR55_18635	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BSR55_18660	COG1929	Belongs to the glycerate kinase type-1 family
BSR55_18695	COG1733	regulation of RNA biosynthetic process
BSR55_18700	COG1028	Short-chain dehydrogenase reductase Sdr
BSR55_18710	COG4770	biotin carboxylase activity
BSR55_18730	COG1914	H( )-stimulated, divalent metal cation uptake system
BSR55_18735	COG0583	DNA-binding transcription factor activity
BSR55_18780	COG1560	Kdo2-lipid A biosynthetic process
BSR55_18830	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BSR55_18840	COG0473	3-isopropylmalate dehydrogenase activity
BSR55_18855	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BSR55_18870	COG0583	DNA-binding transcription factor activity
BSR55_18885	COG0494	nUDIX hydrolase
BSR55_18910	COG1960	acyl-CoA dehydrogenase activity
BSR55_18920	COG0753	catalase activity
BSR55_18960	COG0583	DNA-binding transcription factor activity
BSR55_18975	COG2378	regulation of single-species biofilm formation
BSR55_18980	COG0546	phosphoglycolate phosphatase activity
BSR55_18990	COG1530	ribonuclease E activity
BSR55_18995	COG0318	PFAM AMP-dependent synthetase and ligase
BSR55_19025	COG1983	PspC domain protein
BSR55_19030	COG0517	IMP dehydrogenase activity
BSR55_19090	COG3328	transposase activity
BSR55_19100	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BSR55_19145	COG2226	methyltransferase
BSR55_19160	COG0628	permease
BSR55_19165	COG2032	superoxide dismutase activity
BSR55_19180	COG1289	transmembrane transporter activity
BSR55_19190	COG2814	Major facilitator Superfamily
BSR55_19215	COG1181	Belongs to the D-alanine--D-alanine ligase family
BSR55_19230	COG0277	FAD linked oxidase domain protein
BSR55_19235	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BSR55_19240	COG5006	permease, DMT superfamily
BSR55_19250	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BSR55_19275	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BSR55_19280	COG5380	lipid catabolic process
BSR55_19285	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BSR55_19295	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BSR55_19305	COG0335	large ribosomal subunit rRNA binding
BSR55_19315	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BSR55_19320	COG0228	four-way junction DNA binding
BSR55_19390	COG4969	Belongs to the N-Me-Phe pilin family
BSR55_19400	COG0194	GDP metabolic process
BSR55_19405	COG1758	RNA polymerase activity
BSR55_19410	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BSR55_19430	COG3307	-O-antigen
BSR55_19435	COG4969	Belongs to the N-Me-Phe pilin family
BSR55_19455	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BSR55_19460	COG1704	LemA family
BSR55_19465	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BSR55_19470	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BSR55_19475	COG0195	Participates in both transcription termination and antitermination
BSR55_19480	COG0779	Required for maturation of 30S ribosomal subunits
BSR55_19530	COG0237	dephospho-CoA kinase activity
BSR55_19540	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BSR55_19545	COG3123	guanosine phosphorylase activity
BSR55_19550	COG0497	DNA recombination
BSR55_19560	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BSR55_19580	COG1289	transmembrane transporter activity
BSR55_19590	COG2249	NAD(P)H dehydrogenase (quinone) activity
BSR55_19600	COG1132	(ABC) transporter
BSR55_19620	COG4974	Belongs to the 'phage' integrase family
BSR55_19635	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BSR55_19640	COG1686	Belongs to the peptidase S11 family
BSR55_19645	COG2197	response regulator
BSR55_19660	COG0793	Belongs to the peptidase S41A family
BSR55_19665	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BSR55_19670	COG0795	lipopolysaccharide-transporting ATPase activity
BSR55_19675	COG0795	lipopolysaccharide-transporting ATPase activity
BSR55_19705	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BSR55_19740	COG1024	Enoyl-CoA hydratase
BSR55_19740	COG1250	3-hydroxyacyl-CoA dehydrogenase
BSR55_19745	COG0183	Belongs to the thiolase family
BSR55_19785	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BSR55_19800	COG0326	Molecular chaperone. Has ATPase activity
BSR55_19815	COG2056	Na+-H+ antiporter family
BSR55_19845	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BSR55_19850	COG0085	RNA polymerase activity
BSR55_19865	COG0081	regulation of translation
BSR55_19880	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BSR55_19970	COG0181	hydroxymethylbilane synthase activity
BSR55_19980	COG0745	RESPONSE REGULATOR receiver
BSR55_19980	COG2972	Histidine kinase
BSR55_19985	COG0165	Argininosuccinate lyase
BSR55_20005	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BSR55_20025	COG3158	transport of potassium into the cell
BSR55_20035	COG0582	viral genome integration into host DNA
BSR55_20105	COG1401	restriction endodeoxyribonuclease activity
BSR55_20155	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
BSR55_20165	COG1335	isochorismatase
BSR55_20170	COG0583	DNA-binding transcription factor activity
BSR55_20175	COG0450	alkyl hydroperoxide reductase
BSR55_20195	COG0629	single-stranded DNA binding
BSR55_20200	COG2814	Major facilitator Superfamily
BSR55_20210	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BSR55_20210	COG0352	thiamine-phosphate diphosphorylase activity
BSR55_20210	COG0351	phosphomethylpyrimidine kinase
BSR55_20220	COG2814	Major facilitator Superfamily
BSR55_20235	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BSR55_20240	COG2267	carboxylic ester hydrolase activity
BSR55_20285	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BSR55_20290	COG0259	pyridoxamine-phosphate oxidase activity
BSR55_20310	COG0426	domain, Protein
BSR55_20310	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR55_20315	COG2119	membrane
BSR55_20355	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BSR55_20365	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BSR55_20375	COG0189	ligase activity
BSR55_20385	COG2226	methyltransferase
BSR55_20390	COG2720	vancomycin resistance protein
BSR55_20405	COG0708	Exodeoxyribonuclease III
BSR55_20410	COG1393	Belongs to the ArsC family
BSR55_20430	COG3706	GGDEF domain
BSR55_20470	COG0410	ABC transporter
BSR55_20485	COG0559	Belongs to the binding-protein-dependent transport system permease family
BSR55_20500	COG3150	esterase
BSR55_20520	COG2918	glutathione biosynthetic process
BSR55_20530	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BSR55_20540	COG2733	membrane
BSR55_20565	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BSR55_20570	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR55_20635	COG0436	Aminotransferase
BSR55_20640	COG0534	Mate efflux family protein
BSR55_20705	COG3830	Belongs to the UPF0237 family
BSR55_20705	COG0560	Phosphoserine phosphatase
BSR55_20720	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BSR55_20730	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BSR55_20735	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BSR55_20745	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BSR55_20750	COG1230	cation diffusion facilitator family transporter
BSR55_20755	COG0640	Transcriptional regulator
BSR55_20770	COG1683	Conserved Protein
BSR55_20775	COG0385	Bile acid
BSR55_20780	COG1335	isochorismatase
BSR55_20785	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BSR55_20810	COG0633	Ferredoxin
BSR55_20835	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BSR55_20840	COG2819	hydrolase of the alpha beta superfamily
BSR55_20845	COG2983	Belongs to the UPF0260 family
BSR55_20850	COG5487	UPF0391 membrane protein
BSR55_20865	COG1194	a g-specific adenine glycosylase
BSR55_20870	COG0739	heme binding
BSR55_20880	COG2818	Glycosylase
BSR55_20885	COG1064	alcohol dehydrogenase
BSR55_20900	COG0583	DNA-binding transcription factor activity
BSR55_20905	COG0656	L-ascorbic acid biosynthetic process
BSR55_20910	COG2814	Major facilitator Superfamily
BSR55_20950	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR55_20955	COG1309	transcriptional regulator
BSR55_20960	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BSR55_20965	COG2233	PERMEase
BSR55_20980	COG0196	riboflavin kinase activity
BSR55_20985	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BSR55_20990	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BSR55_20995	COG1047	Peptidyl-prolyl cis-trans
BSR55_21015	COG1794	racemase activity, acting on amino acids and derivatives
BSR55_21030	COG0174	glutamine synthetase
BSR55_21050	COG0129	dihydroxy-acid dehydratase activity
BSR55_21055	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BSR55_21055	COG2885	chlorophyll binding
BSR55_21085	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BSR55_21100	COG0733	neurotransmitter:sodium symporter activity
BSR55_21105	COG3738	Protein conserved in bacteria
BSR55_21110	COG1012	belongs to the aldehyde dehydrogenase family
BSR55_21155	COG0737	Belongs to the 5'-nucleotidase family
BSR55_21160	COG2175	clavaminate synthase activity
BSR55_21165	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BSR55_21170	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BSR55_21175	COG4521	taurine ABC transporter
BSR55_21205	COG0443	Heat shock 70 kDa protein
BSR55_21245	COG2951	lytic endotransglycosylase activity
BSR55_21250	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BSR55_21270	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BSR55_21280	COG2388	GCN5-related N-acetyl-transferase
BSR55_21285	COG2388	GCN5-related N-acetyl-transferase
BSR55_21290	COG2814	Major facilitator Superfamily
BSR55_21300	COG0861	Integral membrane protein TerC family
BSR55_21315	COG0754	glutathionylspermidine amidase activity
BSR55_21325	COG0402	S-adenosylhomocysteine deaminase activity
BSR55_21335	COG2261	transglycosylase associated protein
BSR55_21340	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BSR55_21370	COG0706	membrane insertase activity
BSR55_21375	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BSR55_21380	COG0594	ribonuclease P activity
BSR55_21385	COG0230	Belongs to the bacterial ribosomal protein bL34 family