BSR55_00005 SM00382 ATPases associated with a variety of cellular activities BSR55_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain BSR55_00010 SM00480 DNA polymerase III beta subunit BSR55_00020 SM00387 Histidine kinase-like ATPases BSR55_00020 SM00433 TopoisomeraseII BSR55_00030 SM00382 ATPases associated with a variety of cellular activities BSR55_00110 SM00248 ankyrin repeats BSR55_00140 SM00382 ATPases associated with a variety of cellular activities BSR55_00140 SM01086 C-terminal, D2-small domain, of ClpB protein BSR55_00220 SM00382 ATPases associated with a variety of cellular activities BSR55_00235 SM00062 Bacterial periplasmic substrate-binding proteins BSR55_00240 SM00062 Bacterial periplasmic substrate-binding proteins BSR55_00315 SM00342 helix_turn_helix, arabinose operon control protein BSR55_00340 SM00028 Tetratricopeptide repeats BSR55_00350 SM00644 BSR55_00350 BSR55_00375 SM00226 Low molecular weight phosphatase family BSR55_00435 SM00984 UDP binding domain BSR55_00460 SM00382 ATPases associated with a variety of cellular activities BSR55_00480 SM00091 PAS domain BSR55_00480 SM00382 ATPases associated with a variety of cellular activities BSR55_00505 SM01007 Class II Aldolase and Adducin N-terminal domain BSR55_00515 SM00346 helix_turn_helix isocitrate lyase regulation BSR55_00520 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSR55_00550 SM00822 BSR55_00550 BSR55_00620 SM00937 BSR55_00620 BSR55_00625 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSR55_00680 SM00421 helix_turn_helix, Lux Regulon BSR55_00680 SM00448 cheY-homologous receiver domain BSR55_00690 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_00715 SM00387 Histidine kinase-like ATPases BSR55_00715 SM00388 His Kinase A (phosphoacceptor) domain BSR55_00720 SM00448 cheY-homologous receiver domain BSR55_00720 SM00862 Transcriptional regulatory protein, C terminal BSR55_00730 SM00836 DALR anticodon binding domain BSR55_00730 SM01016 Arginyl tRNA synthetase N terminal dom BSR55_00750 SM00919 Malic enzyme, NAD binding domain BSR55_00750 SM01274 BSR55_00750 BSR55_00795 SM00382 ATPases associated with a variety of cellular activities BSR55_00890 SM00342 helix_turn_helix, arabinose operon control protein BSR55_01010 SM00387 Histidine kinase-like ATPases BSR55_01010 SM00388 His Kinase A (phosphoacceptor) domain BSR55_01010 SM00448 cheY-homologous receiver domain BSR55_01045 SM00267 diguanylate cyclase BSR55_01075 SM01091 Transporter associated domain BSR55_01105 SM00434 DNA Topoisomerase IV BSR55_01170 SM00342 helix_turn_helix, arabinose operon control protein BSR55_01215 SM00882 Coenzyme A transferase BSR55_01220 SM00354 helix_turn _helix lactose operon repressor BSR55_01230 SM00382 ATPases associated with a variety of cellular activities BSR55_01240 SM00938 Nitrogen regulatory protein P-II BSR55_01335 SM00382 ATPases associated with a variety of cellular activities BSR55_01340 SM00671 Sel1-like repeats. BSR55_01355 SM00357 Cold shock protein domain BSR55_01380 SM00474 3'-5' exonuclease BSR55_01445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSR55_01445 SM00387 Histidine kinase-like ATPases BSR55_01445 SM00388 His Kinase A (phosphoacceptor) domain BSR55_01450 SM00448 cheY-homologous receiver domain BSR55_01450 SM00862 Transcriptional regulatory protein, C terminal BSR55_01460 SM00316 Ribosomal protein S1-like RNA-binding domain BSR55_01460 SM00732 Likely ribonuclease with RNase H fold. BSR55_01465 SM00422 helix_turn_helix, mercury resistance BSR55_01485 SM00822 BSR55_01485 BSR55_01490 SM00671 Sel1-like repeats. BSR55_01630 SM00842 Cell division protein FtsA BSR55_01650 SM00965 Secretin and TonB N terminus short domain BSR55_01815 SM01387 BSR55_01815 BSR55_01820 SM00316 Ribosomal protein S1-like RNA-binding domain BSR55_01820 SM00322 K homology RNA-binding domain BSR55_01840 SM00271 DnaJ molecular chaperone homology domain BSR55_01885 SM00487 DEAD-like helicases superfamily BSR55_01885 SM00490 helicase superfamily c-terminal domain BSR55_01925 SM00116 Domain in cystathionine beta-synthase and other proteins. BSR55_01925 SM01091 Transporter associated domain BSR55_01980 SM00849 Metallo-beta-lactamase superfamily BSR55_02025 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_02095 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_02130 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_02140 SM00861 Transketolase, pyrimidine binding domain BSR55_02150 SM00487 DEAD-like helicases superfamily BSR55_02150 SM00490 helicase superfamily c-terminal domain BSR55_02155 SM00382 ATPases associated with a variety of cellular activities BSR55_02200 SM00487 DEAD-like helicases superfamily BSR55_02200 SM00490 helicase superfamily c-terminal domain BSR55_02210 SM00563 Phosphate acyltransferases BSR55_02265 SM01403 BSR55_02265 BSR55_02285 SM01382 BSR55_02285 BSR55_02285 SM01383 BSR55_02285 BSR55_02300 SM00322 K homology RNA-binding domain BSR55_02320 SM01374 BSR55_02320 BSR55_02325 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BSR55_02390 SM00363 S4 RNA-binding domain BSR55_02390 SM01390 BSR55_02390 BSR55_02395 SM00662 RNA polymerases D BSR55_02440 SM00342 helix_turn_helix, arabinose operon control protein BSR55_02475 SM00316 Ribosomal protein S1-like RNA-binding domain BSR55_02475 SM00955 BSR55_02475 BSR55_02520 SM00382 ATPases associated with a variety of cellular activities BSR55_02525 SM00062 Bacterial periplasmic substrate-binding proteins BSR55_02525 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BSR55_02530 SM00062 Bacterial periplasmic substrate-binding proteins BSR55_02575 SM00990 BSR55_02575 BSR55_02585 SM00342 helix_turn_helix, arabinose operon control protein BSR55_02645 SM00248 ankyrin repeats BSR55_02675 SM00342 helix_turn_helix, arabinose operon control protein BSR55_02710 SM00450 Rhodanese Homology Domain BSR55_02720 SM00479 BSR55_02720 BSR55_02795 SM00382 ATPases associated with a variety of cellular activities BSR55_02840 SM00028 Tetratricopeptide repeats BSR55_02855 SM00014 Acid phosphatase homologues BSR55_02865 SM00562 BSR55_02865 BSR55_02875 SM00028 Tetratricopeptide repeats BSR55_02900 SM00564 beta-propeller repeat BSR55_02940 SM00387 Histidine kinase-like ATPases BSR55_02940 SM00388 His Kinase A (phosphoacceptor) domain BSR55_02940 SM00448 cheY-homologous receiver domain BSR55_02960 SM00954 Region found in RelA / SpoT proteins BSR55_02980 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSR55_03030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSR55_03030 SM00387 Histidine kinase-like ATPases BSR55_03030 SM00388 His Kinase A (phosphoacceptor) domain BSR55_03035 SM00448 cheY-homologous receiver domain BSR55_03035 SM00862 Transcriptional regulatory protein, C terminal BSR55_03145 SM00382 ATPases associated with a variety of cellular activities BSR55_03150 SM00507 HNH nucleases BSR55_03160 SM00347 helix_turn_helix multiple antibiotic resistance protein BSR55_03175 SM00331 Sigma factor PP2C-like phosphatases BSR55_03335 SM00448 cheY-homologous receiver domain BSR55_03340 SM00448 cheY-homologous receiver domain BSR55_03345 SM00260 Two component signalling adaptor domain BSR55_03350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSR55_03355 SM00073 Histidine Phosphotransfer domain BSR55_03355 SM00260 Two component signalling adaptor domain BSR55_03355 SM00387 Histidine kinase-like ATPases BSR55_03355 SM00448 cheY-homologous receiver domain BSR55_03355 SM01231 BSR55_03355 BSR55_03365 SM00052 Putative diguanylate phosphodiesterase BSR55_03365 SM00267 diguanylate cyclase BSR55_03475 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_03475 SM00895 BSR55_03475 BSR55_03490 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSR55_03520 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_03535 SM00833 Cobalamin synthesis protein cobW C-terminal domain BSR55_03545 SM00822 BSR55_03545 BSR55_03550 SM00822 BSR55_03550 BSR55_03570 SM00354 helix_turn _helix lactose operon repressor BSR55_03620 SM00422 helix_turn_helix, mercury resistance BSR55_03640 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BSR55_03640 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BSR55_03670 SM01323 BSR55_03670 BSR55_03770 SM01150 BSR55_03770 BSR55_03780 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BSR55_03785 SM00387 Histidine kinase-like ATPases BSR55_03785 SM00388 His Kinase A (phosphoacceptor) domain BSR55_03805 SM00984 UDP binding domain BSR55_03890 SM00671 Sel1-like repeats. BSR55_03935 SM00342 helix_turn_helix, arabinose operon control protein BSR55_03960 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BSR55_04055 SM00873 B3/4 domain BSR55_04055 SM00874 tRNA synthetase B5 domain BSR55_04055 SM00896 Ferredoxin-fold anticodon binding domain BSR55_04060 SM00411 bacterial (prokaryotic) histone like domain BSR55_04075 SM00357 Cold shock protein domain BSR55_04075 SM00382 ATPases associated with a variety of cellular activities BSR55_04075 SM00959 Rho termination factor, N-terminal domain BSR55_04095 SM00977 TilS substrate C-terminal domain BSR55_04115 SM00421 helix_turn_helix, Lux Regulon BSR55_04145 SM00448 cheY-homologous receiver domain BSR55_04145 SM00862 Transcriptional regulatory protein, C terminal BSR55_04150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSR55_04150 SM00387 Histidine kinase-like ATPases BSR55_04150 SM00388 His Kinase A (phosphoacceptor) domain BSR55_04180 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BSR55_04185 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSR55_04185 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BSR55_04255 SM01004 Delta-aminolevulinic acid dehydratase BSR55_04275 SM00357 Cold shock protein domain BSR55_04290 SM01018 B12 binding domain BSR55_04340 SM00829 Enoylreductase BSR55_04345 SM00829 Enoylreductase BSR55_04380 SM01091 Transporter associated domain BSR55_04420 SM00563 Phosphate acyltransferases BSR55_04485 SM00382 ATPases associated with a variety of cellular activities BSR55_04490 SM00382 ATPases associated with a variety of cellular activities BSR55_04610 SM01322 BSR55_04610 BSR55_04675 SM00849 Metallo-beta-lactamase superfamily BSR55_04735 SM00947 Carbonic anhydrase BSR55_04770 SM00267 diguanylate cyclase BSR55_04785 SM00244 prohibitin homologues BSR55_04800 SM00563 Phosphate acyltransferases BSR55_04815 SM00448 cheY-homologous receiver domain BSR55_04815 SM00862 Transcriptional regulatory protein, C terminal BSR55_04820 SM00387 Histidine kinase-like ATPases BSR55_04820 SM00388 His Kinase A (phosphoacceptor) domain BSR55_04915 SM00014 Acid phosphatase homologues BSR55_05050 SM00450 Rhodanese Homology Domain BSR55_05090 SM01400 BSR55_05090 BSR55_05125 SM00028 Tetratricopeptide repeats BSR55_05140 SM00400 zinc finger BSR55_05140 SM00493 BSR55_05140 BSR55_05150 SM00363 S4 RNA-binding domain BSR55_05250 SM00420 helix_turn_helix, Deoxyribose operon repressor BSR55_05250 SM01134 BSR55_05250 BSR55_05275 SM00046 Diacylglycerol kinase catalytic domain (presumed) BSR55_05285 SM00883 Chaperonin 10 Kd subunit BSR55_05310 SM00116 Domain in cystathionine beta-synthase and other proteins. BSR55_05310 SM00924 MgtE intracellular N domain BSR55_05350 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSR55_05360 SM00978 BSR55_05360 BSR55_05365 SM00382 ATPases associated with a variety of cellular activities BSR55_05400 SM00382 ATPases associated with a variety of cellular activities BSR55_05400 SM00464 Found in ATP-dependent protease La (LON) BSR55_05455 SM00479 BSR55_05455 BSR55_05525 SM00882 Coenzyme A transferase BSR55_05530 SM00882 Coenzyme A transferase BSR55_05610 SM00965 Secretin and TonB N terminus short domain BSR55_05635 SM00671 Sel1-like repeats. BSR55_05680 SM00671 Sel1-like repeats. BSR55_05685 SM00346 helix_turn_helix isocitrate lyase regulation BSR55_05690 SM00882 Coenzyme A transferase BSR55_05695 SM00882 Coenzyme A transferase BSR55_05705 SM00998 Adenylosuccinate lyase C-terminus BSR55_05740 SM00710 Parallel beta-helix repeats BSR55_05750 SM00564 beta-propeller repeat BSR55_05795 SM00422 helix_turn_helix, mercury resistance BSR55_05815 SM00746 metallochaperone-like domain BSR55_05820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSR55_05820 SM00387 Histidine kinase-like ATPases BSR55_05820 SM00388 His Kinase A (phosphoacceptor) domain BSR55_05825 SM00448 cheY-homologous receiver domain BSR55_05825 SM00862 Transcriptional regulatory protein, C terminal BSR55_05860 SM00387 Histidine kinase-like ATPases BSR55_05860 SM00388 His Kinase A (phosphoacceptor) domain BSR55_05865 SM00448 cheY-homologous receiver domain BSR55_05865 SM00862 Transcriptional regulatory protein, C terminal BSR55_05900 SM00965 Secretin and TonB N terminus short domain BSR55_06000 SM00530 Helix-turn-helix XRE-family like proteins BSR55_06035 SM00507 HNH nucleases BSR55_06275 SM00487 DEAD-like helicases superfamily BSR55_06275 SM00490 helicase superfamily c-terminal domain BSR55_06330 SM01011 Aminopeptidase P, N-terminal domain BSR55_06335 SM00671 Sel1-like repeats. BSR55_06400 SM00479 BSR55_06400 BSR55_06405 SM00257 Lysin motif BSR55_06425 SM00382 ATPases associated with a variety of cellular activities BSR55_06465 SM00342 helix_turn_helix, arabinose operon control protein BSR55_06540 SM00382 ATPases associated with a variety of cellular activities BSR55_06580 SM00530 Helix-turn-helix XRE-family like proteins BSR55_06820 SM00530 Helix-turn-helix XRE-family like proteins BSR55_06860 SM00479 BSR55_06860 BSR55_06915 SM00903 Flavin reductase like domain BSR55_06960 SM00880 BSR55_06960 BSR55_06960 SM01118 BSR55_06960 BSR55_06965 SM01118 BSR55_06965 BSR55_07020 SM00382 ATPases associated with a variety of cellular activities BSR55_07030 SM00448 cheY-homologous receiver domain BSR55_07030 SM00862 Transcriptional regulatory protein, C terminal BSR55_07035 SM00387 Histidine kinase-like ATPases BSR55_07035 SM00388 His Kinase A (phosphoacceptor) domain BSR55_07095 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BSR55_07225 SM00354 helix_turn _helix lactose operon repressor BSR55_07295 SM00382 ATPases associated with a variety of cellular activities BSR55_07295 SM00487 DEAD-like helicases superfamily BSR55_07295 SM00490 helicase superfamily c-terminal domain BSR55_07295 SM00847 Helicase associated domain (HA2) Add an annotation BSR55_07305 SM00563 Phosphate acyltransferases BSR55_07330 SM00912 haemagglutination activity domain BSR55_07340 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_07340 SM00866 BSR55_07340 BSR55_07375 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BSR55_07425 SM00382 ATPases associated with a variety of cellular activities BSR55_07530 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSR55_07540 SM00422 helix_turn_helix, mercury resistance BSR55_07560 SM00422 helix_turn_helix, mercury resistance BSR55_07580 SM00487 DEAD-like helicases superfamily BSR55_07580 SM00490 helicase superfamily c-terminal domain BSR55_07615 SM00860 SMI1 / KNR4 family BSR55_07675 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BSR55_07675 SM00534 ATPase domain of DNA mismatch repair MUTS family BSR55_07715 SM00388 His Kinase A (phosphoacceptor) domain BSR55_07720 SM00448 cheY-homologous receiver domain BSR55_07720 SM00862 Transcriptional regulatory protein, C terminal BSR55_07790 SM01034 Sensors of blue-light using FAD BSR55_07795 SM01034 Sensors of blue-light using FAD BSR55_07825 SM00342 helix_turn_helix, arabinose operon control protein BSR55_07840 SM00829 Enoylreductase BSR55_07855 SM00098 Alkaline phosphatase homologues BSR55_07860 SM00098 Alkaline phosphatase homologues BSR55_07865 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_07865 SM00895 BSR55_07865 BSR55_07880 SM01130 BSR55_07880 BSR55_07910 SM00342 helix_turn_helix, arabinose operon control protein BSR55_07965 SM00342 helix_turn_helix, arabinose operon control protein BSR55_08025 SM00342 helix_turn_helix, arabinose operon control protein BSR55_08040 SM00347 helix_turn_helix multiple antibiotic resistance protein BSR55_08080 SM00903 Flavin reductase like domain BSR55_08145 SM00387 Histidine kinase-like ATPases BSR55_08145 SM00388 His Kinase A (phosphoacceptor) domain BSR55_08150 SM00448 cheY-homologous receiver domain BSR55_08150 SM00862 Transcriptional regulatory protein, C terminal BSR55_08200 SM00342 helix_turn_helix, arabinose operon control protein BSR55_08235 SM00267 diguanylate cyclase BSR55_08240 SM00267 diguanylate cyclase BSR55_08250 SM00487 DEAD-like helicases superfamily BSR55_08250 SM00490 helicase superfamily c-terminal domain BSR55_08270 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BSR55_08355 SM00936 Penicillin-binding protein 5, C-terminal domain BSR55_08375 SM00257 Lysin motif BSR55_08425 SM00052 Putative diguanylate phosphodiesterase BSR55_08440 SM00841 Elongation factor P, C-terminal BSR55_08440 SM01185 BSR55_08440 BSR55_08470 SM00460 Transglutaminase/protease-like homologues BSR55_08495 SM00342 helix_turn_helix, arabinose operon control protein BSR55_08580 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BSR55_08595 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BSR55_08615 SM00344 helix_turn_helix ASNC type BSR55_08630 SM00344 helix_turn_helix ASNC type BSR55_08650 SM00788 Adenylosuccinate synthetase BSR55_08675 SM00100 Cyclic nucleotide-monophosphate binding domain BSR55_08675 SM00419 helix_turn_helix, cAMP Regulatory protein BSR55_08700 SM00450 Rhodanese Homology Domain BSR55_08715 SM00382 ATPases associated with a variety of cellular activities BSR55_08715 SM01086 C-terminal, D2-small domain, of ClpB protein BSR55_08735 SM00981 BSR55_08735 BSR55_08795 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_08825 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_08885 SM00563 Phosphate acyltransferases BSR55_08900 SM00344 helix_turn_helix ASNC type BSR55_08915 SM00905 Dihydroneopterin aldolase BSR55_08975 SM00028 Tetratricopeptide repeats BSR55_09015 SM00870 BSR55_09015 BSR55_09035 SM00342 helix_turn_helix, arabinose operon control protein BSR55_09060 SM00357 Cold shock protein domain BSR55_09060 SM00894 Excalibur calcium-binding domain BSR55_09080 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSR55_09115 SM00100 Cyclic nucleotide-monophosphate binding domain BSR55_09165 SM00382 ATPases associated with a variety of cellular activities BSR55_09205 SM00671 Sel1-like repeats. BSR55_09225 SM00530 Helix-turn-helix XRE-family like proteins BSR55_09235 SM00344 helix_turn_helix ASNC type BSR55_09250 SM00671 Sel1-like repeats. BSR55_09255 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSR55_09255 SM00267 diguanylate cyclase BSR55_09280 SM00363 S4 RNA-binding domain BSR55_09305 SM00853 MutL C terminal dimerisation domain BSR55_09305 SM01340 BSR55_09305 BSR55_09320 SM00257 Lysin motif BSR55_09375 SM00470 ParB-like nuclease domain BSR55_09390 SM00382 ATPases associated with a variety of cellular activities BSR55_09450 SM00986 Uracil DNA glycosylase superfamily BSR55_09450 SM00987 UreE urease accessory protein, C-terminal domain BSR55_09475 SM00316 Ribosomal protein S1-like RNA-binding domain BSR55_09480 SM00411 bacterial (prokaryotic) histone like domain BSR55_09500 SM00530 Helix-turn-helix XRE-family like proteins BSR55_09505 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BSR55_09520 SM00342 helix_turn_helix, arabinose operon control protein BSR55_09590 SM00267 diguanylate cyclase BSR55_09595 SM00859 Semialdehyde dehydrogenase, NAD binding domain BSR55_09610 SM00382 ATPases associated with a variety of cellular activities BSR55_09610 SM01086 C-terminal, D2-small domain, of ClpB protein BSR55_09740 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BSR55_09850 SM00487 DEAD-like helicases superfamily BSR55_09850 SM00490 helicase superfamily c-terminal domain BSR55_09850 SM00982 BSR55_09850 BSR55_09850 SM01058 CarD-like/TRCF domain BSR55_09860 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain BSR55_09875 SM00271 DnaJ molecular chaperone homology domain BSR55_09910 SM00411 bacterial (prokaryotic) histone like domain BSR55_09920 SM00342 helix_turn_helix, arabinose operon control protein BSR55_10035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSR55_10035 SM00267 diguanylate cyclase BSR55_10045 SM00530 Helix-turn-helix XRE-family like proteins BSR55_10105 SM00357 Cold shock protein domain BSR55_10135 SM00357 Cold shock protein domain BSR55_10345 SM01034 Sensors of blue-light using FAD BSR55_10380 SM00342 helix_turn_helix, arabinose operon control protein BSR55_10490 SM00855 Phosphoglycerate mutase family BSR55_10530 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_10540 SM00155 Phospholipase D. Active site motifs. BSR55_10545 SM00829 Enoylreductase BSR55_10580 SM00342 helix_turn_helix, arabinose operon control protein BSR55_10590 SM00382 ATPases associated with a variety of cellular activities BSR55_10665 SM00530 Helix-turn-helix XRE-family like proteins BSR55_10675 SM00344 helix_turn_helix ASNC type BSR55_10710 SM00882 Coenzyme A transferase BSR55_10715 SM00882 Coenzyme A transferase BSR55_10750 SM00346 helix_turn_helix isocitrate lyase regulation BSR55_10760 SM00346 helix_turn_helix isocitrate lyase regulation BSR55_10795 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_10795 SM00895 BSR55_10795 BSR55_10815 SM01130 BSR55_10815 BSR55_10820 SM00822 BSR55_10820 BSR55_10860 SM00342 helix_turn_helix, arabinose operon control protein BSR55_10995 SM00855 Phosphoglycerate mutase family BSR55_11010 SM00257 Lysin motif BSR55_11055 SM00988 UreE urease accessory protein, N-terminal domain BSR55_11130 SM00342 helix_turn_helix, arabinose operon control protein BSR55_11145 SM00052 Putative diguanylate phosphodiesterase BSR55_11145 SM00267 diguanylate cyclase BSR55_11150 SM00849 Metallo-beta-lactamase superfamily BSR55_11175 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSR55_11205 SM00855 Phosphoglycerate mutase family BSR55_11255 SM01006 Siderophore biosynthesis protein domain BSR55_11300 SM00195 Dual specificity phosphatase, catalytic domain BSR55_11310 SM00563 Phosphate acyltransferases BSR55_11375 SM00563 Phosphate acyltransferases BSR55_11490 SM01192 BSR55_11490 BSR55_11490 SM01193 BSR55_11490 BSR55_11645 SM00344 helix_turn_helix ASNC type BSR55_11715 SM00347 helix_turn_helix multiple antibiotic resistance protein BSR55_11760 SM00878 Biotin carboxylase C-terminal domain BSR55_11770 SM00267 diguanylate cyclase BSR55_11820 SM00363 S4 RNA-binding domain BSR55_11825 SM00382 ATPases associated with a variety of cellular activities BSR55_11880 SM00935 Outer membrane protein (OmpH-like) BSR55_11890 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSR55_11920 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_11925 SM00091 PAS domain BSR55_11925 SM00387 Histidine kinase-like ATPases BSR55_11925 SM00388 His Kinase A (phosphoacceptor) domain BSR55_11930 SM00382 ATPases associated with a variety of cellular activities BSR55_11930 SM00448 cheY-homologous receiver domain BSR55_11985 SM00382 ATPases associated with a variety of cellular activities BSR55_11990 SM00347 helix_turn_helix multiple antibiotic resistance protein BSR55_12000 SM01264 BSR55_12000 BSR55_12115 SM00382 ATPases associated with a variety of cellular activities BSR55_12175 SM01091 Transporter associated domain BSR55_12180 SM00347 helix_turn_helix multiple antibiotic resistance protein BSR55_12205 SM00382 ATPases associated with a variety of cellular activities BSR55_12205 SM00962 SRP54-type protein, GTPase domain BSR55_12205 SM00963 SRP54-type protein, helical bundle domain BSR55_12240 SM00116 Domain in cystathionine beta-synthase and other proteins. BSR55_12260 SM00382 ATPases associated with a variety of cellular activities BSR55_12275 SM00474 3'-5' exonuclease BSR55_12280 SM00493 BSR55_12280 BSR55_12305 SM01324 BSR55_12305 BSR55_12370 SM00226 Low molecular weight phosphatase family BSR55_12395 SM00382 ATPases associated with a variety of cellular activities BSR55_12425 SM00822 BSR55_12425 BSR55_12525 SM00867 YceI-like domain BSR55_12540 SM00861 Transketolase, pyrimidine binding domain BSR55_12605 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_12605 SM00876 Biotin and Thiamin Synthesis associated domain BSR55_12640 SM00855 Phosphoglycerate mutase family BSR55_12660 SM00487 DEAD-like helicases superfamily BSR55_12660 SM00490 helicase superfamily c-terminal domain BSR55_12665 SM00357 Cold shock protein domain BSR55_12730 SM00421 helix_turn_helix, Lux Regulon BSR55_12730 SM00448 cheY-homologous receiver domain BSR55_12735 SM00387 Histidine kinase-like ATPases BSR55_12755 SM00822 BSR55_12755 BSR55_12760 SM00342 helix_turn_helix, arabinose operon control protein BSR55_12795 SM00937 BSR55_12795 BSR55_12880 SM00342 helix_turn_helix, arabinose operon control protein BSR55_12915 SM01005 Alanine racemase, C-terminal domain BSR55_12920 SM01034 Sensors of blue-light using FAD BSR55_12935 SM00460 Transglutaminase/protease-like homologues BSR55_12960 SM01228 BSR55_12960 BSR55_12990 SM00798 AICARFT/IMPCHase bienzyme BSR55_12990 SM00851 MGS-like domain BSR55_12995 SM01209 BSR55_12995 BSR55_12995 SM01210 BSR55_12995 BSR55_13020 SM00382 ATPases associated with a variety of cellular activities BSR55_13020 SM00930 BSR55_13020 BSR55_13035 SM00849 Metallo-beta-lactamase superfamily BSR55_13230 SM00507 HNH nucleases BSR55_13255 SM00778 Zinc-binding domain of primase-helicase BSR55_13270 SM00530 Helix-turn-helix XRE-family like proteins BSR55_13310 SM00220 Serine/Threonine protein kinases, catalytic domain BSR55_13325 SM00481 DNA polymerase alpha chain like domain BSR55_13390 SM00382 ATPases associated with a variety of cellular activities BSR55_13455 SM00830 Chorismate mutase type II BSR55_13485 SM00382 ATPases associated with a variety of cellular activities BSR55_13645 SM00116 Domain in cystathionine beta-synthase and other proteins. BSR55_13650 SM00840 BSR55_13650 BSR55_13770 SM01211 BSR55_13770 BSR55_13785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSR55_13795 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSR55_13800 SM00382 ATPases associated with a variety of cellular activities BSR55_13865 SM00860 SMI1 / KNR4 family BSR55_13900 SM01230 BSR55_13900 BSR55_13990 SM00463 Small MutS-related domain BSR55_14025 SM00822 BSR55_14025 BSR55_14085 SM01007 Class II Aldolase and Adducin N-terminal domain BSR55_14100 SM00903 Flavin reductase like domain BSR55_14145 SM00382 ATPases associated with a variety of cellular activities BSR55_14190 SM00796 Allophanate hydrolase subunit 1 BSR55_14190 SM00797 Allophanate hydrolase subunit 2 BSR55_14190 SM00878 Biotin carboxylase C-terminal domain BSR55_14230 SM00382 ATPases associated with a variety of cellular activities BSR55_14245 SM00852 Probable molybdopterin binding domain BSR55_14250 SM00852 Probable molybdopterin binding domain BSR55_14265 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_14275 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSR55_14295 SM01012 BSR55_14295 BSR55_14335 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_14345 SM00347 helix_turn_helix multiple antibiotic resistance protein BSR55_14445 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_14475 SM00972 Spore Coat Protein U domain BSR55_14500 SM00972 Spore Coat Protein U domain BSR55_14545 SM00829 Enoylreductase BSR55_14565 SM00382 ATPases associated with a variety of cellular activities BSR55_14715 SM00912 haemagglutination activity domain BSR55_14760 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_14760 SM00895 BSR55_14760 BSR55_14800 SM01329 BSR55_14800 BSR55_14845 SM00671 Sel1-like repeats. BSR55_14875 SM00996 S-adenosyl-L-homocysteine hydrolase BSR55_14875 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BSR55_14890 SM00052 Putative diguanylate phosphodiesterase BSR55_14890 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSR55_14890 SM00091 PAS domain BSR55_14890 SM00267 diguanylate cyclase BSR55_14895 SM00919 Malic enzyme, NAD binding domain BSR55_14895 SM01274 BSR55_14895 BSR55_14935 SM00831 Cation transporter/ATPase, N-terminus BSR55_14945 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_14960 SM00095 Transthyretin BSR55_15045 SM00358 Double-stranded RNA binding motif BSR55_15045 SM00535 Ribonuclease III family BSR55_15060 SM00838 Elongation factor G C-terminus BSR55_15080 SM00014 Acid phosphatase homologues BSR55_15090 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSR55_15100 SM00342 helix_turn_helix, arabinose operon control protein BSR55_15160 SM00382 ATPases associated with a variety of cellular activities BSR55_15250 SM00867 YceI-like domain BSR55_15285 SM00434 DNA Topoisomerase IV BSR55_15305 SM00893 Electron transfer flavoprotein domain BSR55_15310 SM00893 Electron transfer flavoprotein domain BSR55_15320 SM00344 helix_turn_helix ASNC type BSR55_15390 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BSR55_15400 SM00478 endonuclease III BSR55_15405 SM00326 Src homology 3 domains BSR55_15460 SM00881 CoA binding domain BSR55_15480 SM00861 Transketolase, pyrimidine binding domain BSR55_15525 SM01324 BSR55_15525 BSR55_15605 SM00382 ATPases associated with a variety of cellular activities BSR55_15615 SM01103 BSR55_15615 BSR55_15635 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BSR55_15640 SM00851 MGS-like domain BSR55_15640 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BSR55_15680 SM00882 Coenzyme A transferase BSR55_15685 SM00882 Coenzyme A transferase BSR55_15690 SM00346 helix_turn_helix isocitrate lyase regulation BSR55_15840 SM00382 ATPases associated with a variety of cellular activities BSR55_15915 SM00316 Ribosomal protein S1-like RNA-binding domain BSR55_15950 SM00845 GatB domain BSR55_16045 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSR55_16060 SM00882 Coenzyme A transferase BSR55_16065 SM00882 Coenzyme A transferase BSR55_16080 SM00382 ATPases associated with a variety of cellular activities BSR55_16080 SM00989 BSR55_16080 BSR55_16125 SM00422 helix_turn_helix, mercury resistance BSR55_16160 SM00833 Cobalamin synthesis protein cobW C-terminal domain BSR55_16210 SM00342 helix_turn_helix, arabinose operon control protein BSR55_16250 SM00342 helix_turn_helix, arabinose operon control protein BSR55_16285 SM01329 BSR55_16285 BSR55_16325 SM00829 Enoylreductase BSR55_16345 SM00861 Transketolase, pyrimidine binding domain BSR55_16355 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_16365 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_16380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSR55_16380 SM00387 Histidine kinase-like ATPases BSR55_16380 SM00388 His Kinase A (phosphoacceptor) domain BSR55_16390 SM00448 cheY-homologous receiver domain BSR55_16390 SM00862 Transcriptional regulatory protein, C terminal BSR55_16510 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_16535 SM00062 Bacterial periplasmic substrate-binding proteins BSR55_16540 SM00267 diguanylate cyclase BSR55_16555 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_16590 SM00903 Flavin reductase like domain BSR55_16605 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_16605 SM00895 BSR55_16605 BSR55_16625 SM00382 ATPases associated with a variety of cellular activities BSR55_16640 SM00382 ATPases associated with a variety of cellular activities BSR55_16645 SM00382 ATPases associated with a variety of cellular activities BSR55_16660 SM00422 helix_turn_helix, mercury resistance BSR55_16680 SM00421 helix_turn_helix, Lux Regulon BSR55_16690 SM00849 Metallo-beta-lactamase superfamily BSR55_16710 SM00346 helix_turn_helix isocitrate lyase regulation BSR55_16760 SM00226 Low molecular weight phosphatase family BSR55_16765 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSR55_16975 SM00267 diguanylate cyclase BSR55_16995 SM00244 prohibitin homologues BSR55_17030 SM00382 ATPases associated with a variety of cellular activities BSR55_17050 SM00833 Cobalamin synthesis protein cobW C-terminal domain BSR55_17065 SM00563 Phosphate acyltransferases BSR55_17085 SM00843 BSR55_17085 BSR55_17125 SM00838 Elongation factor G C-terminus BSR55_17125 SM00889 Elongation factor G, domain IV BSR55_17160 SM00327 von Willebrand factor (vWF) type A domain BSR55_17175 SM00825 Beta-ketoacyl synthase BSR55_17210 SM00990 BSR55_17210 BSR55_17235 SM01005 Alanine racemase, C-terminal domain BSR55_17245 SM00344 helix_turn_helix ASNC type BSR55_17270 SM00342 helix_turn_helix, arabinose operon control protein BSR55_17445 SM00062 Bacterial periplasmic substrate-binding proteins BSR55_17460 SM00382 ATPases associated with a variety of cellular activities BSR55_17645 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSR55_17645 SM00245 tail specific protease BSR55_17720 SM00382 ATPases associated with a variety of cellular activities BSR55_17720 SM00994 ClpX C4-type zinc finger BSR55_17720 SM01086 C-terminal, D2-small domain, of ClpB protein BSR55_17745 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BSR55_17755 SM00917 LeuA allosteric (dimerisation) domain BSR55_17770 SM00671 Sel1-like repeats. BSR55_17910 SM00267 diguanylate cyclase BSR55_17955 SM00957 SecA DEAD-like domain BSR55_17955 SM00958 SecA preprotein cross-linking domain BSR55_17965 SM00257 Lysin motif BSR55_17975 SM00822 BSR55_17975 BSR55_17980 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BSR55_18010 SM00849 Metallo-beta-lactamase superfamily BSR55_18015 SM00195 Dual specificity phosphatase, catalytic domain BSR55_18065 SM00342 helix_turn_helix, arabinose operon control protein BSR55_18170 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSR55_18170 SM00292 breast cancer carboxy-terminal domain BSR55_18170 SM00532 Ligase N family BSR55_18175 SM00771 ZipA, C-terminal domain (FtsZ-binding) BSR55_18185 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_18215 SM00382 ATPases associated with a variety of cellular activities BSR55_18215 SM00962 SRP54-type protein, GTPase domain BSR55_18215 SM00963 SRP54-type protein, helical bundle domain BSR55_18360 SM00878 Biotin carboxylase C-terminal domain BSR55_18405 SM00966 SpoVT / AbrB like domain BSR55_18420 SM00487 DEAD-like helicases superfamily BSR55_18420 SM00490 helicase superfamily c-terminal domain BSR55_18475 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BSR55_18505 SM00729 Elongator protein 3, MiaB family, Radical SAM BSR55_18520 SM00481 DNA polymerase alpha chain like domain BSR55_18545 SM00450 Rhodanese Homology Domain BSR55_18650 SM00360 RNA recognition motif BSR55_18685 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BSR55_18685 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BSR55_18685 SM00493 BSR55_18685 BSR55_18710 SM00878 Biotin carboxylase C-terminal domain BSR55_18715 SM00796 Allophanate hydrolase subunit 1 BSR55_18715 SM00797 Allophanate hydrolase subunit 2 BSR55_18745 SM00382 ATPases associated with a variety of cellular activities BSR55_18775 SM00506 Appr-1"-p processing enzyme BSR55_18800 SM00859 Semialdehyde dehydrogenase, NAD binding domain BSR55_18815 SM00870 BSR55_18815 BSR55_18825 SM00342 helix_turn_helix, arabinose operon control protein BSR55_18830 SM00316 Ribosomal protein S1-like RNA-binding domain BSR55_18840 SM01329 BSR55_18840 BSR55_18890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSR55_18920 SM01060 BSR55_18920 BSR55_18985 SM00363 S4 RNA-binding domain BSR55_18990 SM00316 Ribosomal protein S1-like RNA-binding domain BSR55_19030 SM00116 Domain in cystathionine beta-synthase and other proteins. BSR55_19245 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BSR55_19255 SM00671 Sel1-like repeats. BSR55_19400 SM00072 Guanylate kinase homologues. BSR55_19405 SM01409 BSR55_19405 BSR55_19410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSR55_19410 SM00954 Region found in RelA / SpoT proteins BSR55_19475 SM00316 Ribosomal protein S1-like RNA-binding domain BSR55_19540 SM00967 RNA 2'-O ribose methyltransferase substrate binding BSR55_19560 SM00732 Likely ribonuclease with RNase H fold. BSR55_19585 SM00346 helix_turn_helix isocitrate lyase regulation BSR55_19600 SM00382 ATPases associated with a variety of cellular activities BSR55_19615 SM00899 BSR55_19615 BSR55_19645 SM00421 helix_turn_helix, Lux Regulon BSR55_19645 SM00448 cheY-homologous receiver domain BSR55_19650 SM00091 PAS domain BSR55_19650 SM00387 Histidine kinase-like ATPases BSR55_19650 SM00388 His Kinase A (phosphoacceptor) domain BSR55_19655 SM00382 ATPases associated with a variety of cellular activities BSR55_19655 SM00448 cheY-homologous receiver domain BSR55_19660 SM00245 tail specific protease BSR55_19715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSR55_19715 SM00465 GIY-YIG type nucleases (URI domain) BSR55_19770 SM00422 helix_turn_helix, mercury resistance BSR55_19800 SM00387 Histidine kinase-like ATPases BSR55_19845 SM00663 RNA polymerase I subunit A N-terminus BSR55_19870 SM00649 Ribosomal protein L11/L12 BSR55_19875 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BSR55_19875 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BSR55_19925 SM00240 Forkhead associated domain BSR55_19945 SM00528 Domain in histone-like proteins of HNS family BSR55_19975 SM00448 cheY-homologous receiver domain BSR55_19975 SM00850 LytTr DNA-binding domain BSR55_20000 SM00342 helix_turn_helix, arabinose operon control protein BSR55_20015 SM00477 DNA/RNA non-specific endonuclease BSR55_20015 SM00892 DNA/RNA non-specific endonuclease BSR55_20110 SM00507 HNH nucleases BSR55_20185 SM00342 helix_turn_helix, arabinose operon control protein BSR55_20230 SM00641 Glycosyl hydrolases family 25 BSR55_20300 SM00116 Domain in cystathionine beta-synthase and other proteins. BSR55_20300 SM01240 BSR55_20300 BSR55_20310 SM00849 Metallo-beta-lactamase superfamily BSR55_20345 SM00864 Tubulin/FtsZ family, GTPase domain BSR55_20345 SM00865 Tubulin/FtsZ family, C-terminal domain BSR55_20350 SM00842 Cell division protein FtsA BSR55_20425 SM00267 diguanylate cyclase BSR55_20430 SM00267 diguanylate cyclase BSR55_20470 SM00382 ATPases associated with a variety of cellular activities BSR55_20495 SM00387 Histidine kinase-like ATPases BSR55_20495 SM00433 TopoisomeraseII BSR55_20570 SM00903 Flavin reductase like domain BSR55_20645 SM00564 beta-propeller repeat BSR55_20660 SM00448 cheY-homologous receiver domain BSR55_20660 SM00862 Transcriptional regulatory protein, C terminal BSR55_20665 SM00387 Histidine kinase-like ATPases BSR55_20665 SM00388 His Kinase A (phosphoacceptor) domain BSR55_20680 SM00450 Rhodanese Homology Domain BSR55_20755 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSR55_20785 SM01130 BSR55_20785 BSR55_20835 SM00382 ATPases associated with a variety of cellular activities BSR55_20865 SM00478 endonuclease III BSR55_20865 SM00525 BSR55_20865 BSR55_20885 SM00829 Enoylreductase BSR55_20890 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSR55_20935 SM00271 DnaJ molecular chaperone homology domain BSR55_20980 SM00904 Riboflavin kinase BSR55_21030 SM01230 BSR55_21030 BSR55_21040 SM00830 Chorismate mutase type II BSR55_21150 SM00382 ATPases associated with a variety of cellular activities BSR55_21170 SM00382 ATPases associated with a variety of cellular activities BSR55_21175 SM00062 Bacterial periplasmic substrate-binding proteins BSR55_21210 SM00422 helix_turn_helix, mercury resistance BSR55_21235 SM00235 Zinc-dependent metalloprotease BSR55_21255 SM01001 AIR carboxylase BSR55_21375 SM01234 BSR55_21375