locus-tag class description LRO55_00005 PF00308 Bacterial dnaA protein LRO55_00005 PF08299 Bacterial dnaA protein helix-turn-helix LRO55_00005 PF11638 DnaA N-terminal domain LRO55_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LRO55_00010 PF02767 DNA polymerase III beta subunit, central domain LRO55_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LRO55_00015 PF02463 RecF/RecN/SMC N terminal domain LRO55_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_00020 PF18053 DNA gyrase B subunit insert domain LRO55_00020 PF01751 Toprim domain LRO55_00020 PF00204 DNA gyrase B LRO55_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LRO55_00035 PF00005 ABC transporter LRO55_00035 PF12848 ABC transporter LRO55_00055 PF01521 Iron-sulphur cluster biosynthesis LRO55_00060 PF00561 alpha/beta hydrolase fold LRO55_00065 PF03702 Anhydro-N-acetylmuramic acid kinase LRO55_00070 PF00579 tRNA synthetases class I (W and Y) LRO55_00120 PF00209 Sodium:neurotransmitter symporter family LRO55_00130 PF01189 16S rRNA methyltransferase RsmB/F LRO55_00130 PF01029 NusB family LRO55_00135 PF00551 Formyl transferase LRO55_00135 PF02911 Formyl transferase, C-terminal domain LRO55_00140 PF00920 Dehydratase family LRO55_00160 PF00860 Permease family LRO55_00165 PF00311 Phosphoenolpyruvate carboxylase LRO55_00170 PF08361 MAATS-type transcriptional repressor, C-terminal region LRO55_00170 PF00440 Bacterial regulatory proteins, tetR family LRO55_00175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LRO55_00180 PF00873 AcrB/AcrD/AcrF family LRO55_00190 PF01556 DnaJ C terminal domain LRO55_00190 PF00226 DnaJ domain LRO55_00190 PF00684 DnaJ central domain LRO55_00200 PF01113 Dihydrodipicolinate reductase, N-terminus LRO55_00200 PF05173 Dihydrodipicolinate reductase, C-terminus LRO55_00210 PF07690 Major Facilitator Superfamily LRO55_00215 PF00248 Aldo/keto reductase family LRO55_00220 PF03466 LysR substrate binding domain LRO55_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_00235 PF00155 Aminotransferase class I and II LRO55_00235 PF00392 Bacterial regulatory proteins, gntR family LRO55_00240 PF00107 Zinc-binding dehydrogenase LRO55_00240 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_00245 PF03352 Methyladenine glycosylase LRO55_00260 PF10576 Iron-sulfur binding domain of endonuclease III LRO55_00260 PF00633 Helix-hairpin-helix motif LRO55_00260 PF00730 HhH-GPD superfamily base excision DNA repair protein LRO55_00260 PF14815 NUDIX domain LRO55_00275 PF07043 Protein of unknown function (DUF1328) LRO55_00280 PF03692 Putative zinc- or iron-chelating domain LRO55_00285 PF07995 Glucose / Sorbosone dehydrogenase LRO55_00290 PF12002 MgsA AAA+ ATPase C terminal LRO55_00290 PF16193 AAA C-terminal domain LRO55_00290 PF00004 ATPase family associated with various cellular activities (AAA) LRO55_00295 PF01226 Formate/nitrite transporter LRO55_00305 PF01259 SAICAR synthetase LRO55_00315 PF00701 Dihydrodipicolinate synthetase family LRO55_00320 PF00857 Isochorismatase family LRO55_00325 PF01758 Sodium Bile acid symporter family LRO55_00330 PF01554 MatE LRO55_00335 PF04463 Protein of unknown function (DUF523) LRO55_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LRO55_00350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LRO55_00355 PF02798 Glutathione S-transferase, N-terminal domain LRO55_00355 PF14497 Glutathione S-transferase, C-terminal domain LRO55_00365 PF00324 Amino acid permease LRO55_00375 PF02492 CobW/HypB/UreG, nucleotide-binding domain LRO55_00375 PF07683 Cobalamin synthesis protein cobW C-terminal domain LRO55_00385 PF00392 Bacterial regulatory proteins, gntR family LRO55_00385 PF07702 UTRA domain LRO55_00390 PF05962 HutD LRO55_00395 PF01175 Urocanase Rossmann-like domain LRO55_00395 PF17391 Urocanase N-terminal domain LRO55_00395 PF17392 Urocanase C-terminal domain LRO55_00400 PF00221 Aromatic amino acid lyase LRO55_00405 PF00324 Amino acid permease LRO55_00410 PF01979 Amidohydrolase family LRO55_00415 PF00491 Arginase family LRO55_00425 PF13419 Haloacid dehalogenase-like hydrolase LRO55_00430 PF01177 Asp/Glu/Hydantoin racemase LRO55_00435 PF01810 LysE type translocator LRO55_00445 PF01380 SIS domain LRO55_00450 PF12804 MobA-like NTP transferase domain LRO55_00450 PF14602 Hexapeptide repeat of succinyl-transferase LRO55_00450 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_00455 PF04608 Phosphatidylglycerophosphatase A LRO55_00460 PF02769 AIR synthase related protein, C-terminal domain LRO55_00460 PF00586 AIR synthase related protein, N-terminal domain LRO55_00465 PF01029 NusB family LRO55_00470 PF00885 6,7-dimethyl-8-ribityllumazine synthase LRO55_00475 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LRO55_00475 PF00925 GTP cyclohydrolase II LRO55_00500 PF02580 D-Tyr-tRNA(Tyr) deacylase LRO55_00505 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LRO55_00505 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LRO55_00510 PF00581 Rhodanese-like domain LRO55_00515 PF02666 Phosphatidylserine decarboxylase LRO55_00525 PF12727 PBP superfamily domain LRO55_00525 PF12728 Helix-turn-helix domain LRO55_00540 PF00989 PAS fold LRO55_00540 PF00512 His Kinase A (phospho-acceptor) domain LRO55_00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_00540 PF11808 Phosphate regulon sensor protein PhoR LRO55_00545 PF00486 Transcriptional regulatory protein, C terminal LRO55_00545 PF00072 Response regulator receiver domain LRO55_00555 PF00106 short chain dehydrogenase LRO55_00560 PF01554 MatE LRO55_00565 PF00155 Aminotransferase class I and II LRO55_00570 PF04286 Protein of unknown function (DUF445) LRO55_00585 PF04262 Glutamate-cysteine ligase LRO55_00590 PF02600 Disulfide bond formation protein DsbB LRO55_00595 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LRO55_00595 PF04717 Type VI secretion system, phage-baseplate injector LRO55_00595 PF13296 Putative type VI secretion system Rhs element Vgr LRO55_00600 PF00182 Chitinase class I LRO55_00620 PF05728 Uncharacterised protein family (UPF0227) LRO55_00625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_00625 PF01751 Toprim domain LRO55_00625 PF00204 DNA gyrase B LRO55_00625 PF00986 DNA gyrase B subunit, carboxyl terminus LRO55_00630 PF04115 Ureidoglycolate lyase LRO55_00635 PF03561 Allantoicase repeat LRO55_00640 PF01494 FAD binding domain LRO55_00650 PF00860 Permease family LRO55_00655 PF00576 HIUase/Transthyretin family LRO55_00685 PF11412 Disulphide bond corrector protein DsbC LRO55_00685 PF02683 Cytochrome C biogenesis protein transmembrane region LRO55_00690 PF07694 5TMR of 5TMR-LYT LRO55_00690 PF00990 Diguanylate cyclase, GGDEF domain LRO55_00695 PF07859 alpha/beta hydrolase fold LRO55_00705 PF03960 ArsC family LRO55_00710 PF03372 Endonuclease/Exonuclease/phosphatase family LRO55_00715 PF00156 Phosphoribosyl transferase domain LRO55_00720 PF07715 TonB-dependent Receptor Plug Domain LRO55_00720 PF00593 TonB dependent receptor LRO55_00730 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LRO55_00730 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LRO55_00735 PF04101 Glycosyltransferase family 28 C-terminal domain LRO55_00735 PF03033 Glycosyltransferase family 28 N-terminal domain LRO55_00740 PF08245 Mur ligase middle domain LRO55_00740 PF01225 Mur ligase family, catalytic domain LRO55_00740 PF02875 Mur ligase family, glutamate ligase domain LRO55_00745 PF07478 D-ala D-ala ligase C-terminus LRO55_00745 PF01820 D-ala D-ala ligase N-terminus LRO55_00750 PF03799 Cell division protein FtsQ LRO55_00750 PF08478 POTRA domain, FtsQ-type LRO55_00755 PF02491 SHS2 domain inserted in FTSA LRO55_00760 PF12327 FtsZ family, C-terminal domain LRO55_00760 PF00091 Tubulin/FtsZ family, GTPase domain LRO55_00765 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LRO55_00775 PF01551 Peptidase family M23 LRO55_00780 PF17831 Pyruvate dehydrogenase E1 component middle domain LRO55_00780 PF00456 Transketolase, thiamine diphosphate binding domain LRO55_00785 PF00364 Biotin-requiring enzyme LRO55_00785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LRO55_00785 PF02817 e3 binding domain LRO55_00795 PF01169 Uncharacterized protein family UPF0016 LRO55_00800 PF00593 TonB dependent receptor LRO55_00800 PF07715 TonB-dependent Receptor Plug Domain LRO55_00810 PF00478 IMP dehydrogenase / GMP reductase domain LRO55_00810 PF00571 CBS domain LRO55_00815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LRO55_00815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LRO55_00815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LRO55_00815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LRO55_00820 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LRO55_00820 PF01243 Pyridoxamine 5'-phosphate oxidase LRO55_00825 PF01368 DHH family LRO55_00825 PF02272 DHHA1 domain LRO55_00825 PF17768 RecJ OB domain LRO55_00850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LRO55_00855 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LRO55_00860 PF04452 RNA methyltransferase LRO55_00865 PF00924 Mechanosensitive ion channel LRO55_00865 PF05552 Conserved TM helix LRO55_00875 PF00501 AMP-binding enzyme LRO55_00875 PF13193 AMP-binding enzyme C-terminal domain LRO55_00875 PF16177 Acetyl-coenzyme A synthetase N-terminus LRO55_00880 PF00857 Isochorismatase family LRO55_00885 PF01037 Lrp/AsnC ligand binding domain LRO55_00890 PF00296 Luciferase-like monooxygenase LRO55_00895 PF03358 NADPH-dependent FMN reductase LRO55_00900 PF00196 Bacterial regulatory proteins, luxR family LRO55_00900 PF00072 Response regulator receiver domain LRO55_00910 PF00672 HAMP domain LRO55_00910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_00910 PF00512 His Kinase A (phospho-acceptor) domain LRO55_00910 PF01627 Hpt domain LRO55_00910 PF00072 Response regulator receiver domain LRO55_00915 PF04341 Protein of unknown function, DUF485 LRO55_00920 PF00474 Sodium:solute symporter family LRO55_00930 PF02028 BCCT, betaine/carnitine/choline family transporter LRO55_00940 PF00990 Diguanylate cyclase, GGDEF domain LRO55_00945 PF17760 UvrA interaction domain LRO55_00945 PF17755 UvrA DNA-binding domain LRO55_00945 PF00005 ABC transporter LRO55_00950 PF00440 Bacterial regulatory proteins, tetR family LRO55_00950 PF16925 Tetracyclin repressor-like, C-terminal domain LRO55_00955 PF00107 Zinc-binding dehydrogenase LRO55_00955 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_00965 PF06942 GlpM protein LRO55_00970 PF00106 short chain dehydrogenase LRO55_00975 PF00376 MerR family regulatory protein LRO55_00975 PF09278 MerR, DNA binding LRO55_00980 PF03070 TENA/THI-4/PQQC family LRO55_00980 PF08543 Phosphomethylpyrimidine kinase LRO55_00980 PF02581 Thiamine monophosphate synthase LRO55_00990 PF07690 Major Facilitator Superfamily LRO55_00995 PF00436 Single-strand binding protein family LRO55_01005 PF03591 AzlC protein LRO55_01015 PF00324 Amino acid permease LRO55_01020 PF00155 Aminotransferase class I and II LRO55_01020 PF00392 Bacterial regulatory proteins, gntR family LRO55_01025 PF00202 Aminotransferase class-III LRO55_01030 PF00171 Aldehyde dehydrogenase family LRO55_01035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_01040 PF00857 Isochorismatase family LRO55_01045 PF02678 Pirin LRO55_01045 PF05726 Pirin C-terminal cupin domain LRO55_01050 PF01593 Flavin containing amine oxidoreductase LRO55_01080 PF07690 Major Facilitator Superfamily LRO55_01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_01085 PF03466 LysR substrate binding domain LRO55_01105 PF02655 ATP-grasp domain LRO55_01105 PF00206 Lyase LRO55_01125 PF00248 Aldo/keto reductase family LRO55_01130 PF02311 AraC-like ligand binding domain LRO55_01130 PF12833 Helix-turn-helix domain LRO55_01145 PF00005 ABC transporter LRO55_01160 PF01638 HxlR-like helix-turn-helix LRO55_01165 PF02525 Flavodoxin-like fold LRO55_01185 PF12833 Helix-turn-helix domain LRO55_01195 PF02705 K+ potassium transporter LRO55_01225 PF00230 Major intrinsic protein LRO55_01240 PF00977 Histidine biosynthesis protein LRO55_01245 PF01636 Phosphotransferase enzyme family LRO55_01260 PF03992 Antibiotic biosynthesis monooxygenase LRO55_01265 PF00892 EamA-like transporter family LRO55_01275 PF00664 ABC transporter transmembrane region LRO55_01275 PF00005 ABC transporter LRO55_01280 PF00977 Histidine biosynthesis protein LRO55_01295 PF00117 Glutamine amidotransferase class-I LRO55_01300 PF00475 Imidazoleglycerol-phosphate dehydratase LRO55_01320 PF00583 Acetyltransferase (GNAT) family LRO55_01325 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LRO55_01325 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LRO55_01335 PF00672 HAMP domain LRO55_01335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_01335 PF00512 His Kinase A (phospho-acceptor) domain LRO55_01340 PF00072 Response regulator receiver domain LRO55_01340 PF00486 Transcriptional regulatory protein, C terminal LRO55_01345 PF17674 HHH domain LRO55_01345 PF00575 S1 RNA binding domain LRO55_01345 PF09371 Tex-like protein N-terminal domain LRO55_01345 PF16921 Tex protein YqgF-like domain LRO55_01350 PF01740 STAS domain LRO55_01350 PF00916 Sulfate permease family LRO55_01355 PF00106 short chain dehydrogenase LRO55_01360 PF01053 Cys/Met metabolism PLP-dependent enzyme LRO55_01365 PF00005 ABC transporter LRO55_01365 PF12848 ABC transporter LRO55_01390 PF00529 HlyD membrane-fusion protein of T1SS LRO55_01390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LRO55_01395 PF00873 AcrB/AcrD/AcrF family LRO55_01400 PF01545 Cation efflux family LRO55_01430 PF00324 Amino acid permease LRO55_01445 PF00749 tRNA synthetases class I (E and Q), catalytic domain LRO55_01460 PF01795 MraW methylase family LRO55_01470 PF00905 Penicillin binding protein transpeptidase domain LRO55_01470 PF03717 Penicillin-binding Protein dimerisation domain LRO55_01475 PF01225 Mur ligase family, catalytic domain LRO55_01475 PF08245 Mur ligase middle domain LRO55_01475 PF02875 Mur ligase family, glutamate ligase domain LRO55_01480 PF08245 Mur ligase middle domain LRO55_01480 PF02875 Mur ligase family, glutamate ligase domain LRO55_01480 PF01225 Mur ligase family, catalytic domain LRO55_01485 PF00953 Glycosyl transferase family 4 LRO55_01495 PF13847 Methyltransferase domain LRO55_01500 PF17092 Penicillin-binding protein OB-like domain LRO55_01500 PF00912 Transglycosylase LRO55_01500 PF00905 Penicillin binding protein transpeptidase domain LRO55_01505 PF11104 Type IV pilus assembly protein PilM; LRO55_01510 PF05137 Fimbrial assembly protein (PilN) LRO55_01515 PF04350 Pilus assembly protein, PilO LRO55_01525 PF03958 Bacterial type II/III secretion system short domain LRO55_01525 PF07660 Secretin and TonB N terminus short domain LRO55_01525 PF11741 AMIN domain LRO55_01525 PF00263 Bacterial type II and III secretion system protein LRO55_01530 PF01202 Shikimate kinase LRO55_01535 PF01761 3-dehydroquinate synthase LRO55_01545 PF00310 Glutamine amidotransferases class-II LRO55_01545 PF01645 Conserved region in glutamate synthase LRO55_01545 PF01493 GXGXG motif LRO55_01545 PF04898 Glutamate synthase central domain LRO55_01550 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_01550 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LRO55_01560 PF04011 LemA family LRO55_01565 PF04536 TPM domain LRO55_01575 PF00114 Pilin (bacterial filament) LRO55_01575 PF07963 Prokaryotic N-terminal methylation motif LRO55_01585 PF04932 O-Antigen ligase LRO55_01585 PF15864 Protein glycosylation ligase LRO55_01585 PF11846 Virulence factor membrane-bound polymerase, C-terminal LRO55_01590 PF00210 Ferritin-like domain LRO55_01595 PF04324 BFD-like [2Fe-2S] binding domain LRO55_01600 PF01042 Endoribonuclease L-PSP LRO55_01605 PF02824 TGS domain LRO55_01605 PF04607 Region found in RelA / SpoT proteins LRO55_01605 PF13291 ACT domain LRO55_01615 PF01192 RNA polymerase Rpb6 LRO55_01620 PF00625 Guanylate kinase LRO55_01625 PF02401 LytB protein LRO55_01635 PF00114 Pilin (bacterial filament) LRO55_01635 PF07963 Prokaryotic N-terminal methylation motif LRO55_01660 PF07963 Prokaryotic N-terminal methylation motif LRO55_01660 PF00114 Pilin (bacterial filament) LRO55_01670 PF00886 Ribosomal protein S16 LRO55_01675 PF05239 PRC-barrel domain LRO55_01675 PF01782 RimM N-terminal domain LRO55_01680 PF01746 tRNA (Guanine-1)-methyltransferase LRO55_01685 PF01245 Ribosomal protein L19 LRO55_01690 PF00561 alpha/beta hydrolase fold LRO55_01695 PF03280 Proteobacterial lipase chaperone protein LRO55_01700 PF01509 TruB family pseudouridylate synthase (N terminal domain) LRO55_01700 PF16198 tRNA pseudouridylate synthase B C-terminal domain LRO55_01700 PF09157 Pseudouridine synthase II TruB, C-terminal LRO55_01705 PF01925 Sulfite exporter TauE/SafE LRO55_01715 PF00892 EamA-like transporter family LRO55_01720 PF00892 EamA-like transporter family LRO55_01725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LRO55_01725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LRO55_01730 PF02913 FAD linked oxidases, C-terminal domain LRO55_01730 PF01565 FAD binding domain LRO55_01745 PF03992 Antibiotic biosynthesis monooxygenase LRO55_01750 PF02525 Flavodoxin-like fold LRO55_01760 PF07690 Major Facilitator Superfamily LRO55_01770 PF12805 FUSC-like inner membrane protein yccS LRO55_01775 PF00080 Copper/zinc superoxide dismutase (SODC) LRO55_01780 PF01594 AI-2E family transporter LRO55_01785 PF13614 AAA domain LRO55_01805 PF08241 Methyltransferase domain LRO55_01815 PF00324 Amino acid permease LRO55_01820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LRO55_01820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LRO55_01825 PF00202 Aminotransferase class-III LRO55_01830 PF04958 Arginine N-succinyltransferase beta subunit LRO55_01835 PF00171 Aldehyde dehydrogenase family LRO55_01840 PF04996 Succinylarginine dihydrolase LRO55_01845 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LRO55_01860 PF05922 Peptidase inhibitor I9 LRO55_01860 PF00082 Subtilase family LRO55_01875 PF03466 LysR substrate binding domain LRO55_01875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_01880 PF01177 Asp/Glu/Hydantoin racemase LRO55_01885 PF03466 LysR substrate binding domain LRO55_01885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_01890 PF00892 EamA-like transporter family LRO55_01905 PF05746 DALR anticodon binding domain LRO55_01905 PF02092 Glycyl-tRNA synthetase beta subunit LRO55_01910 PF02091 Glycyl-tRNA synthetase alpha subunit LRO55_01930 PF00571 CBS domain LRO55_01930 PF01743 Poly A polymerase head domain LRO55_01935 PF04024 PspC domain LRO55_01945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_01945 PF12806 Acetyl-CoA dehydrogenase C-terminal like LRO55_01945 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_01945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_01955 PF08501 Shikimate dehydrogenase substrate binding domain LRO55_01955 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LRO55_01955 PF01488 Shikimate / quinate 5-dehydrogenase LRO55_01960 PF01218 Coproporphyrinogen III oxidase LRO55_01965 PF00925 GTP cyclohydrolase II LRO55_01970 PF02780 Transketolase, C-terminal domain LRO55_01970 PF02779 Transketolase, pyrimidine binding domain LRO55_01970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LRO55_01975 PF00459 Inositol monophosphatase family LRO55_01980 PF00271 Helicase conserved C-terminal domain LRO55_01980 PF00270 DEAD/DEAH box helicase LRO55_01990 PF00005 ABC transporter LRO55_01995 PF02405 Permease MlaE LRO55_02015 PF01544 CorA-like Mg2+ transporter protein LRO55_02020 PF03641 Possible lysine decarboxylase LRO55_02025 PF00293 NUDIX domain LRO55_02030 PF00156 Phosphoribosyl transferase domain LRO55_02035 PF00270 DEAD/DEAH box helicase LRO55_02035 PF17191 RecG wedge domain LRO55_02035 PF00271 Helicase conserved C-terminal domain LRO55_02050 PF01553 Acyltransferase LRO55_02060 PF00375 Sodium:dicarboxylate symporter family LRO55_02070 PF01926 50S ribosome-binding GTPase LRO55_02075 PF02082 Transcriptional regulator LRO55_02080 PF00042 Globin LRO55_02080 PF00175 Oxidoreductase NAD-binding domain LRO55_02080 PF00970 Oxidoreductase FAD-binding domain LRO55_02085 PF05872 Bacterial protein of unknown function (DUF853) LRO55_02090 PF01053 Cys/Met metabolism PLP-dependent enzyme LRO55_02095 PF00117 Glutamine amidotransferase class-I LRO55_02100 PF00338 Ribosomal protein S10p/S20e LRO55_02105 PF00297 Ribosomal protein L3 LRO55_02110 PF00573 Ribosomal protein L4/L1 family LRO55_02115 PF00276 Ribosomal protein L23 LRO55_02120 PF03947 Ribosomal Proteins L2, C-terminal domain LRO55_02120 PF00181 Ribosomal Proteins L2, RNA binding domain LRO55_02125 PF00203 Ribosomal protein S19 LRO55_02130 PF00237 Ribosomal protein L22p/L17e LRO55_02140 PF00252 Ribosomal protein L16p/L10e LRO55_02145 PF00831 Ribosomal L29 protein LRO55_02150 PF00366 Ribosomal protein S17 LRO55_02155 PF00238 Ribosomal protein L14p/L23e LRO55_02160 PF00467 KOW motif LRO55_02160 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LRO55_02165 PF00281 Ribosomal protein L5 LRO55_02165 PF00673 ribosomal L5P family C-terminus LRO55_02170 PF00253 Ribosomal protein S14p/S29e LRO55_02175 PF00410 Ribosomal protein S8 LRO55_02180 PF00347 Ribosomal protein L6 LRO55_02185 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LRO55_02190 PF00333 Ribosomal protein S5, N-terminal domain LRO55_02190 PF03719 Ribosomal protein S5, C-terminal domain LRO55_02195 PF00327 Ribosomal protein L30p/L7e LRO55_02200 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LRO55_02205 PF00344 SecY translocase LRO55_02210 PF00444 Ribosomal protein L36 LRO55_02215 PF00416 Ribosomal protein S13/S18 LRO55_02220 PF00411 Ribosomal protein S11 LRO55_02225 PF01479 S4 domain LRO55_02225 PF00163 Ribosomal protein S4/S9 N-terminal domain LRO55_02230 PF01000 RNA polymerase Rpb3/RpoA insert domain LRO55_02230 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LRO55_02230 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LRO55_02235 PF01196 Ribosomal protein L17 LRO55_02240 PF00743 Flavin-binding monooxygenase-like LRO55_02245 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_02245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_02245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_02250 PF03937 Flavinator of succinate dehydrogenase LRO55_02280 PF09526 Probable metal-binding protein (DUF2387) LRO55_02285 PF01432 Peptidase family M3 LRO55_02290 PF08461 Ribonuclease R winged-helix domain LRO55_02290 PF08206 Ribonuclease B OB domain LRO55_02290 PF00773 RNB domain LRO55_02290 PF00575 S1 RNA binding domain LRO55_02290 PF17876 Cold shock domain LRO55_02335 PF01557 Fumarylacetoacetate (FAA) hydrolase family LRO55_02340 PF03631 Virulence factor BrkB LRO55_02345 PF03358 NADPH-dependent FMN reductase LRO55_02370 PF02130 Uncharacterized protein family UPF0054 LRO55_02375 PF02562 PhoH-like protein LRO55_02380 PF04055 Radical SAM superfamily LRO55_02380 PF01938 TRAM domain LRO55_02380 PF00919 Uncharacterized protein family UPF0004 LRO55_02385 PF01464 Transglycosylase SLT domain LRO55_02385 PF10145 Phage-related minor tail protein LRO55_02385 PF01551 Peptidase family M23 LRO55_02395 PF00056 lactate/malate dehydrogenase, NAD binding domain LRO55_02395 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LRO55_02415 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LRO55_02420 PF01066 CDP-alcohol phosphatidyltransferase LRO55_02470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_02470 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_02470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_02480 PF13302 Acetyltransferase (GNAT) domain LRO55_02485 PF00440 Bacterial regulatory proteins, tetR family LRO55_02485 PF17932 Tetracyclin repressor-like, C-terminal domain LRO55_02500 PF01039 Carboxyl transferase domain LRO55_02505 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_02505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_02505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_02515 PF02785 Biotin carboxylase C-terminal domain LRO55_02515 PF00289 Biotin carboxylase, N-terminal domain LRO55_02515 PF00364 Biotin-requiring enzyme LRO55_02515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LRO55_02525 PF04386 Stringent starvation protein B LRO55_02530 PF00043 Glutathione S-transferase, C-terminal domain LRO55_02530 PF13417 Glutathione S-transferase, N-terminal domain LRO55_02535 PF00380 Ribosomal protein S9/S16 LRO55_02540 PF00572 Ribosomal protein L13 LRO55_02545 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LRO55_02550 PF00398 Ribosomal RNA adenine dimethylase LRO55_02555 PF00149 Calcineurin-like phosphoesterase LRO55_02575 PF16360 GTP-binding GTPase Middle Region LRO55_02575 PF13167 GTP-binding GTPase N-terminal LRO55_02575 PF01926 50S ribosome-binding GTPase LRO55_02585 PF13091 PLD-like domain LRO55_02590 PF00149 Calcineurin-like phosphoesterase LRO55_02590 PF10518 TAT (twin-arginine translocation) pathway signal sequence LRO55_02595 PF00691 OmpA family LRO55_02595 PF00223 Photosystem I psaA/psaB protein LRO55_02600 PF00990 Diguanylate cyclase, GGDEF domain LRO55_02600 PF17152 Periplasmic sensor domain LRO55_02605 PF13689 YfiR/HmsC-like LRO55_02640 PF00403 Heavy-metal-associated domain LRO55_02640 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_02640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LRO55_02650 PF04273 Putative phosphatase (DUF442) LRO55_02650 PF00753 Metallo-beta-lactamase superfamily LRO55_02660 PF00085 Thioredoxin LRO55_02665 PF03061 Thioesterase superfamily LRO55_02675 PF04461 Protein of unknown function (DUF520) LRO55_02685 PF01266 FAD dependent oxidoreductase LRO55_02685 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LRO55_02695 PF03795 YCII-related domain LRO55_02700 PF04279 Intracellular septation protein A LRO55_02705 PF02811 PHP domain LRO55_02710 PF01062 Bestrophin, RFP-TM, chloride channel LRO55_02715 PF04002 RadC-like JAB domain LRO55_02720 PF02441 Flavoprotein LRO55_02720 PF04127 DNA / pantothenate metabolism flavoprotein LRO55_02725 PF02355 Protein export membrane protein LRO55_02725 PF07549 SecD/SecF GG Motif LRO55_02730 PF02355 Protein export membrane protein LRO55_02730 PF13721 SecD export protein N-terminal TM region LRO55_02730 PF07549 SecD/SecF GG Motif LRO55_02735 PF02699 Preprotein translocase subunit LRO55_02740 PF01702 Queuine tRNA-ribosyltransferase LRO55_02755 PF02547 Queuosine biosynthesis protein LRO55_02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_02790 PF00672 HAMP domain LRO55_02790 PF00512 His Kinase A (phospho-acceptor) domain LRO55_02790 PF00072 Response regulator receiver domain LRO55_02790 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LRO55_02790 PF01627 Hpt domain LRO55_02795 PF03710 Glutamate-ammonia ligase adenylyltransferase LRO55_02795 PF08335 GlnD PII-uridylyltransferase LRO55_02800 PF01063 Amino-transferase class IV LRO55_02815 PF01522 Polysaccharide deacetylase LRO55_02820 PF00535 Glycosyl transferase family 2 LRO55_02825 PF13439 Glycosyltransferase Family 4 LRO55_02825 PF00534 Glycosyl transferases group 1 LRO55_02840 PF00535 Glycosyl transferase family 2 LRO55_02840 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LRO55_02855 PF17101 Stealth protein CR1, conserved region 1 LRO55_02855 PF11380 Stealth protein CR2, conserved region 2 LRO55_02855 PF17103 Stealth protein CR4, conserved region 4 LRO55_02860 PF02938 GAD domain LRO55_02860 PF01336 OB-fold nucleic acid binding domain LRO55_02860 PF00152 tRNA synthetases class II (D, K and N) LRO55_02870 PF00593 TonB dependent receptor LRO55_02870 PF07715 TonB-dependent Receptor Plug Domain LRO55_02890 PF06146 Phosphate-starvation-inducible E LRO55_02895 PF00043 Glutathione S-transferase, C-terminal domain LRO55_02895 PF02798 Glutathione S-transferase, N-terminal domain LRO55_02900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_02900 PF03466 LysR substrate binding domain LRO55_02905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_02905 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_02905 PF12806 Acetyl-CoA dehydrogenase C-terminal like LRO55_02905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_02910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_02910 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_02910 PF12806 Acetyl-CoA dehydrogenase C-terminal like LRO55_02910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_02920 PF00512 His Kinase A (phospho-acceptor) domain LRO55_02920 PF00672 HAMP domain LRO55_02920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_02925 PF00486 Transcriptional regulatory protein, C terminal LRO55_02925 PF00072 Response regulator receiver domain LRO55_02935 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LRO55_02955 PF01923 Cobalamin adenosyltransferase LRO55_02960 PF00593 TonB dependent receptor LRO55_02960 PF07715 TonB-dependent Receptor Plug Domain LRO55_02965 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LRO55_02970 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_02995 PF00290 Tryptophan synthase alpha chain LRO55_03000 PF01039 Carboxyl transferase domain LRO55_03005 PF08245 Mur ligase middle domain LRO55_03005 PF02875 Mur ligase family, glutamate ligase domain LRO55_03025 PF00753 Metallo-beta-lactamase superfamily LRO55_03030 PF00578 AhpC/TSA family LRO55_03030 PF10417 C-terminal domain of 1-Cys peroxiredoxin LRO55_03035 PF02810 SEC-C motif LRO55_03035 PF07517 SecA DEAD-like domain LRO55_03035 PF01043 SecA preprotein cross-linking domain LRO55_03035 PF07516 SecA Wing and Scaffold domain LRO55_03045 PF00083 Sugar (and other) transporter LRO55_03045 PF07690 Major Facilitator Superfamily LRO55_03050 PF03006 Haemolysin-III related LRO55_03060 PF13673 Acetyltransferase (GNAT) domain LRO55_03075 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LRO55_03075 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LRO55_03075 PF00378 Enoyl-CoA hydratase/isomerase LRO55_03080 PF00108 Thiolase, N-terminal domain LRO55_03080 PF02803 Thiolase, C-terminal domain LRO55_03085 PF12833 Helix-turn-helix domain LRO55_03085 PF02311 AraC-like ligand binding domain LRO55_03090 PF02515 CoA-transferase family III LRO55_03095 PF04966 Carbohydrate-selective porin, OprB family LRO55_03100 PF01011 PQQ enzyme repeat LRO55_03105 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LRO55_03105 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LRO55_03115 PF00893 Small Multidrug Resistance protein LRO55_03125 PF02803 Thiolase, C-terminal domain LRO55_03125 PF00108 Thiolase, N-terminal domain LRO55_03130 PF07963 Prokaryotic N-terminal methylation motif LRO55_03130 PF00114 Pilin (bacterial filament) LRO55_03135 PF13505 Outer membrane protein beta-barrel domain LRO55_03135 PF00691 OmpA family LRO55_03145 PF01139 tRNA-splicing ligase RtcB LRO55_03150 PF00324 Amino acid permease LRO55_03155 PF08468 Methyltransferase small domain N-terminal LRO55_03155 PF05175 Methyltransferase small domain LRO55_03160 PF00860 Permease family LRO55_03165 PF03144 Elongation factor Tu domain 2 LRO55_03165 PF00679 Elongation factor G C-terminus LRO55_03165 PF00009 Elongation factor Tu GTP binding domain LRO55_03170 PF01741 Large-conductance mechanosensitive channel, MscL LRO55_03185 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LRO55_03185 PF06827 Zinc finger found in FPG and IleRS LRO55_03185 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LRO55_03190 PF02245 Methylpurine-DNA glycosylase (MPG) LRO55_03195 PF00593 TonB dependent receptor LRO55_03195 PF07715 TonB-dependent Receptor Plug Domain LRO55_03200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LRO55_03215 PF13098 Thioredoxin-like domain LRO55_03215 PF10411 Disulfide bond isomerase protein N-terminus LRO55_03220 PF01571 Aminomethyltransferase folate-binding domain LRO55_03235 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LRO55_03235 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LRO55_03240 PF00860 Permease family LRO55_03245 PF01613 Flavin reductase like domain LRO55_03250 PF01042 Endoribonuclease L-PSP LRO55_03255 PF00857 Isochorismatase family LRO55_03260 PF00296 Luciferase-like monooxygenase LRO55_03265 PF00881 Nitroreductase family LRO55_03270 PF12697 Alpha/beta hydrolase family LRO55_03280 PF03831 PhnA domain LRO55_03280 PF08274 PhnA Zinc-Ribbon LRO55_03285 PF07411 Domain of unknown function (DUF1508) LRO55_03290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LRO55_03290 PF04073 Aminoacyl-tRNA editing domain LRO55_03290 PF03129 Anticodon binding domain LRO55_03295 PF00873 AcrB/AcrD/AcrF family LRO55_03310 PF00072 Response regulator receiver domain LRO55_03315 PF00072 Response regulator receiver domain LRO55_03320 PF01584 CheW-like domain LRO55_03325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LRO55_03325 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LRO55_03330 PF01584 CheW-like domain LRO55_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_03330 PF00072 Response regulator receiver domain LRO55_03330 PF01627 Hpt domain LRO55_03340 PF01546 Peptidase family M20/M25/M40 LRO55_03340 PF07687 Peptidase dimerisation domain LRO55_03355 PF04304 Protein of unknown function (DUF454) LRO55_03360 PF17969 L,D-transpeptidase C-terminal domain LRO55_03360 PF03734 L,D-transpeptidase catalytic domain LRO55_03400 PF00175 Oxidoreductase NAD-binding domain LRO55_03400 PF00667 FAD binding domain LRO55_03400 PF00258 Flavodoxin LRO55_03410 PF12805 FUSC-like inner membrane protein yccS LRO55_03415 PF07690 Major Facilitator Superfamily LRO55_03420 PF00881 Nitroreductase family LRO55_03435 PF01235 Sodium:alanine symporter family LRO55_03440 PF01734 Patatin-like phospholipase LRO55_03445 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_03445 PF13291 ACT domain LRO55_03450 PF05992 SbmA/BacA-like family LRO55_03480 PF02934 GatB/GatE catalytic domain LRO55_03480 PF02637 GatB domain LRO55_03485 PF01425 Amidase LRO55_03490 PF02686 Glu-tRNAGln amidotransferase C subunit LRO55_03500 PF04085 rod shape-determining protein MreC LRO55_03505 PF04093 rod shape-determining protein MreD LRO55_03510 PF02545 Maf-like protein LRO55_03515 PF00575 S1 RNA binding domain LRO55_03515 PF10150 Ribonuclease E/G family LRO55_03525 PF06974 Protein of unknown function (DUF1298) LRO55_03525 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LRO55_03530 PF01507 Phosphoadenosine phosphosulfate reductase family LRO55_03545 PF02525 Flavodoxin-like fold LRO55_03565 PF02673 Bacitracin resistance protein BacA LRO55_03570 PF06719 AraC-type transcriptional regulator N-terminus LRO55_03570 PF12833 Helix-turn-helix domain LRO55_03575 PF16197 Ketoacyl-synthetase C-terminal extension LRO55_03575 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_03575 PF00109 Beta-ketoacyl synthase, N-terminal domain LRO55_03575 PF14765 Polyketide synthase dehydratase LRO55_03575 PF00698 Acyl transferase domain LRO55_03575 PF00550 Phosphopantetheine attachment site LRO55_03575 PF08659 KR domain LRO55_03575 PF02801 Beta-ketoacyl synthase, C-terminal domain LRO55_03575 PF00107 Zinc-binding dehydrogenase LRO55_03580 PF01965 DJ-1/PfpI family LRO55_03610 PF00324 Amino acid permease LRO55_03615 PF04303 PrpF protein LRO55_03620 PF00348 Polyprenyl synthetase LRO55_03625 PF04237 YjbR LRO55_03630 PF01145 SPFH domain / Band 7 family LRO55_03640 PF01734 Patatin-like phospholipase LRO55_03665 PF08019 Phosphoethanolamine transferase EptA/EptB LRO55_03665 PF00884 Sulfatase LRO55_03670 PF00072 Response regulator receiver domain LRO55_03670 PF00486 Transcriptional regulatory protein, C terminal LRO55_03675 PF08521 Two-component sensor kinase N-terminal LRO55_03675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_03675 PF00512 His Kinase A (phospho-acceptor) domain LRO55_03685 PF00909 Ammonium Transporter Family LRO55_03690 PF03466 LysR substrate binding domain LRO55_03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_03710 PF08264 Anticodon-binding domain of tRNA LRO55_03710 PF00133 tRNA synthetases class I (I, L, M and V) LRO55_03710 PF10458 Valyl tRNA synthetase tRNA binding arm LRO55_03725 PF07690 Major Facilitator Superfamily LRO55_03730 PF01906 Putative heavy-metal-binding LRO55_03735 PF01906 Putative heavy-metal-binding LRO55_03740 PF02321 Outer membrane efflux protein LRO55_03745 PF00873 AcrB/AcrD/AcrF family LRO55_03750 PF00529 HlyD membrane-fusion protein of T1SS LRO55_03750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LRO55_03755 PF01569 PAP2 superfamily LRO55_03765 PF00348 Polyprenyl synthetase LRO55_03770 PF00829 Ribosomal prokaryotic L21 protein LRO55_03775 PF01016 Ribosomal L27 protein LRO55_03780 PF03548 Outer membrane lipoprotein carrier protein LolA LRO55_03790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LRO55_03790 PF02403 Seryl-tRNA synthetase N-terminal domain LRO55_03795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LRO55_03795 PF14824 Sirohaem biosynthesis protein central LRO55_03795 PF10414 Sirohaem synthase dimerisation region LRO55_03800 PF00588 SpoU rRNA Methylase family LRO55_03830 PF03358 NADPH-dependent FMN reductase LRO55_03835 PF13520 Amino acid permease LRO55_03840 PF00465 Iron-containing alcohol dehydrogenase LRO55_03850 PF03099 Biotin/lipoate A/B protein ligase family LRO55_03855 PF04359 Protein of unknown function (DUF493) LRO55_03860 PF04545 Sigma-70, region 4 LRO55_03860 PF04539 Sigma-70 region 3 LRO55_03860 PF04542 Sigma-70 region 2 LRO55_03860 PF00140 Sigma-70 factor, region 1.2 LRO55_03860 PF03979 Sigma-70 factor, region 1.1 LRO55_03860 PF04546 Sigma-70, non-essential region LRO55_03875 PF00581 Rhodanese-like domain LRO55_03875 PF17773 UPF0176 acylphosphatase like domain LRO55_03885 PF00285 Citrate synthase, C-terminal domain LRO55_03890 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LRO55_03895 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LRO55_03900 PF00890 FAD binding domain LRO55_03900 PF02910 Fumarate reductase flavoprotein C-term LRO55_03905 PF13085 2Fe-2S iron-sulfur cluster binding domain LRO55_03920 PF00676 Dehydrogenase E1 component LRO55_03920 PF16870 2-oxoglutarate dehydrogenase C-terminal LRO55_03920 PF02779 Transketolase, pyrimidine binding domain LRO55_03920 PF16078 2-oxoglutarate dehydrogenase N-terminus LRO55_03925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LRO55_03925 PF00364 Biotin-requiring enzyme LRO55_03925 PF02817 e3 binding domain LRO55_03930 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_03930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LRO55_03935 PF00549 CoA-ligase LRO55_03935 PF08442 ATP-grasp domain LRO55_03940 PF02629 CoA binding domain LRO55_03940 PF00549 CoA-ligase LRO55_03955 PF00579 tRNA synthetases class I (W and Y) LRO55_03960 PF05661 Protein of unknown function (DUF808) LRO55_03965 PF04228 Putative neutral zinc metallopeptidase LRO55_03970 PF00999 Sodium/hydrogen exchanger family LRO55_03985 PF09587 Bacterial capsule synthesis protein PGA_cap LRO55_03995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LRO55_04000 PF00582 Universal stress protein family LRO55_04005 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_04010 PF01272 Transcription elongation factor, GreA/GreB, C-term LRO55_04010 PF03449 Transcription elongation factor, N-terminal LRO55_04015 PF02142 MGS-like domain LRO55_04015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LRO55_04015 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LRO55_04020 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LRO55_04020 PF00117 Glutamine amidotransferase class-I LRO55_04040 PF01985 CRS1 / YhbY (CRM) domain LRO55_04045 PF01728 FtsJ-like methyltransferase LRO55_04050 PF00004 ATPase family associated with various cellular activities (AAA) LRO55_04050 PF17862 AAA+ lid domain LRO55_04050 PF06480 FtsH Extracellular LRO55_04050 PF01434 Peptidase family M41 LRO55_04055 PF00809 Pterin binding enzyme LRO55_04075 PF16655 PhoD-like phosphatase, N-terminal domain LRO55_04075 PF09423 PhoD-like phosphatase LRO55_04090 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LRO55_04090 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LRO55_04105 PF00083 Sugar (and other) transporter LRO55_04110 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LRO55_04110 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LRO55_04115 PF01266 FAD dependent oxidoreductase LRO55_04115 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LRO55_04120 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LRO55_04120 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LRO55_04125 PF00781 Diacylglycerol kinase catalytic domain LRO55_04130 PF00149 Calcineurin-like phosphoesterase LRO55_04140 PF00166 Chaperonin 10 Kd subunit LRO55_04145 PF00118 TCP-1/cpn60 chaperonin family LRO55_04150 PF01219 Prokaryotic diacylglycerol kinase LRO55_04155 PF00753 Metallo-beta-lactamase superfamily LRO55_04160 PF03009 Glycerophosphoryl diester phosphodiesterase family LRO55_04165 PF00873 AcrB/AcrD/AcrF family LRO55_04175 PF01435 Peptidase family M48 LRO55_04180 PF01464 Transglycosylase SLT domain LRO55_04185 PF01171 PP-loop family LRO55_04195 PF01464 Transglycosylase SLT domain LRO55_04195 PF00497 Bacterial extracellular solute-binding proteins, family 3 LRO55_04200 PF01272 Transcription elongation factor, GreA/GreB, C-term LRO55_04200 PF03449 Transcription elongation factor, N-terminal LRO55_04220 PF03466 LysR substrate binding domain LRO55_04220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_04225 PF00668 Condensation domain LRO55_04225 PF13193 AMP-binding enzyme C-terminal domain LRO55_04225 PF00501 AMP-binding enzyme LRO55_04225 PF00550 Phosphopantetheine attachment site LRO55_04225 PF00975 Thioesterase domain LRO55_04230 PF03180 NLPA lipoprotein LRO55_04240 PF13411 MerR HTH family regulatory protein LRO55_04300 PF00881 Nitroreductase family LRO55_04315 PF02595 Glycerate kinase family LRO55_04325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LRO55_04325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LRO55_04325 PF11890 Domain of unknown function (DUF3410) LRO55_04330 PF00152 tRNA synthetases class II (D, K and N) LRO55_04340 PF18073 Rubredoxin metal binding domain LRO55_04345 PF01235 Sodium:alanine symporter family LRO55_04350 PF00324 Amino acid permease LRO55_04360 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LRO55_04360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LRO55_04365 PF01678 Diaminopimelate epimerase LRO55_04370 PF03747 ADP-ribosylglycohydrolase LRO55_04380 PF01810 LysE type translocator LRO55_04385 PF00589 Phage integrase family LRO55_04385 PF02899 Phage integrase, N-terminal SAM-like domain LRO55_04395 PF01012 Electron transfer flavoprotein domain LRO55_04400 PF01012 Electron transfer flavoprotein domain LRO55_04400 PF00766 Electron transfer flavoprotein FAD-binding domain LRO55_04410 PF00753 Metallo-beta-lactamase superfamily LRO55_04410 PF16123 Hydroxyacylglutathione hydrolase C-terminus LRO55_04415 PF00521 DNA gyrase/topoisomerase IV, subunit A LRO55_04415 PF03989 DNA gyrase C-terminal domain, beta-propeller LRO55_04430 PF13533 Biotin-lipoyl like LRO55_04440 PF00266 Aminotransferase class-V LRO55_04455 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LRO55_04460 PF00892 EamA-like transporter family LRO55_04470 PF12704 MacB-like periplasmic core domain LRO55_04470 PF02687 FtsX-like permease family LRO55_04475 PF00005 ABC transporter LRO55_04480 PF00753 Metallo-beta-lactamase superfamily LRO55_04480 PF03772 Competence protein LRO55_04480 PF13567 Domain of unknown function (DUF4131) LRO55_04490 PF01343 Peptidase family S49 LRO55_04490 PF06965 Na+/H+ antiporter 1 LRO55_04500 PF00551 Formyl transferase LRO55_04505 PF00586 AIR synthase related protein, N-terminal domain LRO55_04505 PF02769 AIR synthase related protein, C-terminal domain LRO55_04510 PF01594 AI-2E family transporter LRO55_04515 PF11638 DnaA N-terminal domain LRO55_04515 PF00308 Bacterial dnaA protein LRO55_04515 PF08299 Bacterial dnaA protein helix-turn-helix LRO55_04545 PF00588 SpoU rRNA Methylase family LRO55_04545 PF08032 RNA 2'-O ribose methyltransferase substrate binding LRO55_04550 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LRO55_04560 PF00691 OmpA family LRO55_04565 PF04052 TolB amino-terminal domain LRO55_04565 PF07676 WD40-like Beta Propeller Repeat LRO55_04575 PF02472 Biopolymer transport protein ExbD/TolR LRO55_04580 PF01618 MotA/TolQ/ExbB proton channel family LRO55_04585 PF03061 Thioesterase superfamily LRO55_04590 PF01546 Peptidase family M20/M25/M40 LRO55_04590 PF07687 Peptidase dimerisation domain LRO55_04595 PF05496 Holliday junction DNA helicase RuvB P-loop domain LRO55_04595 PF05491 RuvB C-terminal winged helix domain LRO55_04595 PF17864 RuvB AAA lid domain LRO55_04600 PF01330 RuvA N terminal domain LRO55_04600 PF07499 RuvA, C-terminal domain LRO55_04605 PF01966 HD domain LRO55_04610 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LRO55_04610 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LRO55_04610 PF02769 AIR synthase related protein, C-terminal domain LRO55_04615 PF07690 Major Facilitator Superfamily LRO55_04620 PF01784 NIF3 (NGG1p interacting factor 3) LRO55_04625 PF00378 Enoyl-CoA hydratase/isomerase LRO55_04630 PF01467 Cytidylyltransferase-like LRO55_04630 PF00293 NUDIX domain LRO55_04645 PF00578 AhpC/TSA family LRO55_04660 PF06508 Queuosine biosynthesis protein QueC LRO55_04665 PF04055 Radical SAM superfamily LRO55_04670 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_04670 PF14602 Hexapeptide repeat of succinyl-transferase LRO55_04670 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LRO55_04680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_04680 PF03466 LysR substrate binding domain LRO55_04685 PF00005 ABC transporter LRO55_04685 PF12857 TOBE-like domain LRO55_04690 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_04695 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_04710 PF01063 Amino-transferase class IV LRO55_04715 PF02618 YceG-like family LRO55_04720 PF02223 Thymidylate kinase LRO55_04730 PF00890 FAD binding domain LRO55_04730 PF02910 Fumarate reductase flavoprotein C-term LRO55_04735 PF13180 PDZ domain LRO55_04745 PF13302 Acetyltransferase (GNAT) domain LRO55_04750 PF00679 Elongation factor G C-terminus LRO55_04750 PF00009 Elongation factor Tu GTP binding domain LRO55_04750 PF03144 Elongation factor Tu domain 2 LRO55_04750 PF06421 GTP-binding protein LepA C-terminus LRO55_04755 PF10502 Signal peptidase, peptidase S26 LRO55_04765 PF00035 Double-stranded RNA binding motif LRO55_04765 PF14622 Ribonuclease-III-like LRO55_04770 PF07650 KH domain LRO55_04770 PF01926 50S ribosome-binding GTPase LRO55_04780 PF02565 Recombination protein O C terminal LRO55_04780 PF11967 Recombination protein O N terminal LRO55_04785 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LRO55_04790 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LRO55_04795 PF00106 short chain dehydrogenase LRO55_04825 PF00012 Hsp70 protein LRO55_04835 PF00155 Aminotransferase class I and II LRO55_04855 PF00271 Helicase conserved C-terminal domain LRO55_04855 PF04851 Type III restriction enzyme, res subunit LRO55_04855 PF02151 UvrB/uvrC motif LRO55_04855 PF12344 Ultra-violet resistance protein B LRO55_04855 PF17757 UvrB interaction domain LRO55_04870 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LRO55_04870 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LRO55_04885 PF01018 GTP1/OBG LRO55_04885 PF01926 50S ribosome-binding GTPase LRO55_04890 PF00696 Amino acid kinase family LRO55_04890 PF01472 PUA domain LRO55_04900 PF07759 Protein of unknown function (DUF1615) LRO55_04905 PF01207 Dihydrouridine synthase (Dus) LRO55_04910 PF03060 Nitronate monooxygenase LRO55_04925 PF02350 UDP-N-acetylglucosamine 2-epimerase LRO55_04955 PF00875 DNA photolyase LRO55_04955 PF03441 FAD binding domain of DNA photolyase LRO55_04960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LRO55_04965 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_04970 PF07943 Penicillin-binding protein 5, C-terminal domain LRO55_04970 PF00768 D-alanyl-D-alanine carboxypeptidase LRO55_04980 PF03971 Monomeric isocitrate dehydrogenase LRO55_04985 PF00849 RNA pseudouridylate synthase LRO55_04990 PF00180 Isocitrate/isopropylmalate dehydrogenase LRO55_05050 PF06779 Uncharacterised MFS-type transporter YbfB LRO55_05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_05055 PF03466 LysR substrate binding domain LRO55_05060 PF00375 Sodium:dicarboxylate symporter family LRO55_05065 PF02567 Phenazine biosynthesis-like protein LRO55_05070 PF00675 Insulinase (Peptidase family M16) LRO55_05070 PF05193 Peptidase M16 inactive domain LRO55_05095 PF02581 Thiamine monophosphate synthase LRO55_05100 PF00202 Aminotransferase class-III LRO55_05110 PF00849 RNA pseudouridylate synthase LRO55_05115 PF12137 RNA polymerase recycling family C-terminal LRO55_05115 PF00176 SNF2 family N-terminal domain LRO55_05115 PF18339 RapA N-terminal Tudor like domain 1 LRO55_05115 PF18337 RapA N-terminal Tudor like domain LRO55_05115 PF00271 Helicase conserved C-terminal domain LRO55_05125 PF00440 Bacterial regulatory proteins, tetR family LRO55_05130 PF00970 Oxidoreductase FAD-binding domain LRO55_05130 PF00111 2Fe-2S iron-sulfur cluster binding domain LRO55_05130 PF00175 Oxidoreductase NAD-binding domain LRO55_05135 PF00487 Fatty acid desaturase LRO55_05155 PF00202 Aminotransferase class-III LRO55_05160 PF00282 Pyridoxal-dependent decarboxylase conserved domain LRO55_05165 PF00171 Aldehyde dehydrogenase family LRO55_05170 PF01037 Lrp/AsnC ligand binding domain LRO55_05175 PF00205 Thiamine pyrophosphate enzyme, central domain LRO55_05175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LRO55_05175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LRO55_05180 PF00324 Amino acid permease LRO55_05185 PF12849 PBP superfamily domain LRO55_05190 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_05195 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_05200 PF00005 ABC transporter LRO55_05205 PF01343 Peptidase family S49 LRO55_05205 PF08496 Peptidase family S49 N-terminal LRO55_05220 PF08328 Adenylosuccinate lyase C-terminal LRO55_05220 PF00206 Lyase LRO55_05225 PF04356 Protein of unknown function (DUF489) LRO55_05240 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_05245 PF07943 Penicillin-binding protein 5, C-terminal domain LRO55_05245 PF00768 D-alanyl-D-alanine carboxypeptidase LRO55_05260 PF01975 Survival protein SurE LRO55_05265 PF01551 Peptidase family M23 LRO55_05265 PF01476 LysM domain LRO55_05270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_05270 PF03466 LysR substrate binding domain LRO55_05275 PF13654 AAA domain LRO55_05275 PF05362 Lon protease (S16) C-terminal proteolytic domain LRO55_05280 PF07690 Major Facilitator Superfamily LRO55_05285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LRO55_05290 PF13593 SBF-like CPA transporter family (DUF4137) LRO55_05295 PF01197 Ribosomal protein L31 LRO55_05310 PF04055 Radical SAM superfamily LRO55_05315 PF01132 Elongation factor P (EF-P) OB domain LRO55_05315 PF08207 Elongation factor P (EF-P) KOW-like domain LRO55_05315 PF09285 Elongation factor P, C-terminal LRO55_05320 PF13722 5TM C-terminal transporter carbon starvation CstA LRO55_05320 PF02554 Carbon starvation protein CstA LRO55_05325 PF04328 Selenoprotein, putative LRO55_05345 PF00313 'Cold-shock' DNA-binding domain LRO55_05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_05365 PF03466 LysR substrate binding domain LRO55_05385 PF00883 Cytosol aminopeptidase family, catalytic domain LRO55_05385 PF02789 Cytosol aminopeptidase family, N-terminal domain LRO55_05390 PF02423 Ornithine cyclodeaminase/mu-crystallin family LRO55_05395 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_05400 PF13309 HTH domain LRO55_05400 PF08348 YheO-like PAS domain LRO55_05410 PF02678 Pirin LRO55_05410 PF17954 Quercetinase C-terminal cupin domain LRO55_05420 PF01208 Uroporphyrinogen decarboxylase (URO-D) LRO55_05425 PF05675 Protein of unknown function (DUF817) LRO55_05440 PF00144 Beta-lactamase LRO55_05445 PF01227 GTP cyclohydrolase I LRO55_05450 PF00111 2Fe-2S iron-sulfur cluster binding domain LRO55_05450 PF01799 [2Fe-2S] binding domain LRO55_05455 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LRO55_05455 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LRO55_05470 PF00218 Indole-3-glycerol phosphate synthase LRO55_05475 PF02885 Glycosyl transferase family, helical bundle domain LRO55_05475 PF00591 Glycosyl transferase family, a/b domain LRO55_05480 PF07715 TonB-dependent Receptor Plug Domain LRO55_05480 PF00593 TonB dependent receptor LRO55_05485 PF01433 Peptidase family M1 domain LRO55_05485 PF11838 ERAP1-like C-terminal domain LRO55_05490 PF00117 Glutamine amidotransferase class-I LRO55_05505 PF00854 POT family LRO55_05510 PF03951 Glutamine synthetase, beta-Grasp domain LRO55_05510 PF00120 Glutamine synthetase, catalytic domain LRO55_05515 PF04345 Chorismate lyase LRO55_05520 PF01040 UbiA prenyltransferase family LRO55_05555 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LRO55_05555 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LRO55_05560 PF01784 NIF3 (NGG1p interacting factor 3) LRO55_05565 PF13180 PDZ domain LRO55_05570 PF01743 Poly A polymerase head domain LRO55_05570 PF12627 Probable RNA and SrmB- binding site of polymerase A LRO55_05575 PF00390 Malic enzyme, N-terminal domain LRO55_05575 PF03949 Malic enzyme, NAD binding domain LRO55_05575 PF01515 Phosphate acetyl/butaryl transferase LRO55_05580 PF00990 Diguanylate cyclase, GGDEF domain LRO55_05580 PF03707 Bacterial signalling protein N terminal repeat LRO55_05580 PF00563 EAL domain LRO55_05585 PF04452 RNA methyltransferase LRO55_05590 PF02219 Methylenetetrahydrofolate reductase LRO55_05595 PF05221 S-adenosyl-L-homocysteine hydrolase LRO55_05595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LRO55_05610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_05610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_05610 PF09317 Domain of unknown function (DUF1974) LRO55_05615 PF04055 Radical SAM superfamily LRO55_05620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LRO55_05620 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_05630 PF07690 Major Facilitator Superfamily LRO55_05640 PF00557 Metallopeptidase family M24 LRO55_05645 PF00318 Ribosomal protein S2 LRO55_05650 PF00889 Elongation factor TS LRO55_05660 PF12833 Helix-turn-helix domain LRO55_05680 PF03330 Lytic transglycolase LRO55_05680 PF05036 Sporulation related domain LRO55_05685 PF13406 Transglycosylase SLT domain LRO55_05690 PF01098 Cell cycle protein LRO55_05700 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LRO55_05700 PF14489 QueF-like protein LRO55_05705 PF01061 ABC-2 type transporter LRO55_05710 PF00005 ABC transporter LRO55_05740 PF00464 Serine hydroxymethyltransferase LRO55_05745 PF02321 Outer membrane efflux protein LRO55_05750 PF00873 AcrB/AcrD/AcrF family LRO55_05755 PF13533 Biotin-lipoyl like LRO55_05760 PF03466 LysR substrate binding domain LRO55_05760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_05765 PF00497 Bacterial extracellular solute-binding proteins, family 3 LRO55_05770 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_05775 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_05780 PF00005 ABC transporter LRO55_05785 PF00893 Small Multidrug Resistance protein LRO55_05790 PF00155 Aminotransferase class I and II LRO55_05790 PF00392 Bacterial regulatory proteins, gntR family LRO55_05795 PF02567 Phenazine biosynthesis-like protein LRO55_05800 PF00175 Oxidoreductase NAD-binding domain LRO55_05800 PF00970 Oxidoreductase FAD-binding domain LRO55_05805 PF01980 tRNA-methyltransferase O LRO55_05805 PF18389 TrmO C-terminal domain LRO55_05815 PF00437 Type II/IV secretion system protein LRO55_05815 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LRO55_05825 PF00486 Transcriptional regulatory protein, C terminal LRO55_05825 PF00072 Response regulator receiver domain LRO55_05830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_05830 PF08521 Two-component sensor kinase N-terminal LRO55_05830 PF00512 His Kinase A (phospho-acceptor) domain LRO55_05840 PF00293 NUDIX domain LRO55_05850 PF00905 Penicillin binding protein transpeptidase domain LRO55_05850 PF14814 Bifunctional transglycosylase second domain LRO55_05850 PF00912 Transglycosylase LRO55_05855 PF01513 ATP-NAD kinase LRO55_05860 PF07023 Protein of unknown function (DUF1315) LRO55_05870 PF02885 Glycosyl transferase family, helical bundle domain LRO55_05870 PF00591 Glycosyl transferase family, a/b domain LRO55_05875 PF00375 Sodium:dicarboxylate symporter family LRO55_05880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_05880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_05880 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_05890 PF00756 Putative esterase LRO55_05895 PF01842 ACT domain LRO55_05895 PF01817 Chorismate mutase type II LRO55_05895 PF00800 Prephenate dehydratase LRO55_05900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LRO55_05910 PF07687 Peptidase dimerisation domain LRO55_05910 PF01546 Peptidase family M20/M25/M40 LRO55_05915 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain LRO55_05915 PF01137 RNA 3'-terminal phosphate cyclase LRO55_05930 PF01139 tRNA-splicing ligase RtcB LRO55_05935 PF00753 Metallo-beta-lactamase superfamily LRO55_05940 PF06956 Regulator of RNA terminal phosphate cyclase LRO55_05940 PF00158 Sigma-54 interaction domain LRO55_05950 PF03883 Peroxide stress protein YaaA LRO55_05960 PF05690 Thiazole biosynthesis protein ThiG LRO55_05970 PF04241 Protein of unknown function (DUF423) LRO55_05975 PF04542 Sigma-70 region 2 LRO55_05975 PF04545 Sigma-70, region 4 LRO55_05975 PF00140 Sigma-70 factor, region 1.2 LRO55_05990 PF00313 'Cold-shock' DNA-binding domain LRO55_05995 PF00271 Helicase conserved C-terminal domain LRO55_05995 PF00270 DEAD/DEAH box helicase LRO55_06005 PF00881 Nitroreductase family LRO55_06010 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LRO55_06010 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LRO55_06030 PF01180 Dihydroorotate dehydrogenase LRO55_06035 PF02674 Colicin V production protein LRO55_06040 PF00156 Phosphoribosyl transferase domain LRO55_06055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LRO55_06055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LRO55_06060 PF01435 Peptidase family M48 LRO55_06065 PF09424 Yqey-like protein LRO55_06070 PF01165 Ribosomal protein S21 LRO55_06075 PF00814 Glycoprotease family LRO55_06095 PF00069 Protein kinase domain LRO55_06120 PF00313 'Cold-shock' DNA-binding domain LRO55_06145 PF01554 MatE LRO55_06150 PF02321 Outer membrane efflux protein LRO55_06155 PF13977 BetI-type transcriptional repressor, C-terminal LRO55_06155 PF00440 Bacterial regulatory proteins, tetR family LRO55_06165 PF00873 AcrB/AcrD/AcrF family LRO55_06170 PF00106 short chain dehydrogenase LRO55_06175 PF01638 HxlR-like helix-turn-helix LRO55_06195 PF00440 Bacterial regulatory proteins, tetR family LRO55_06200 PF12833 Helix-turn-helix domain LRO55_06200 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_06205 PF00487 Fatty acid desaturase LRO55_06210 PF00561 alpha/beta hydrolase fold LRO55_06215 PF03616 Sodium/glutamate symporter LRO55_06220 PF02254 TrkA-N domain LRO55_06220 PF00999 Sodium/hydrogen exchanger family LRO55_06225 PF00106 short chain dehydrogenase LRO55_06235 PF00083 Sugar (and other) transporter LRO55_06235 PF08946 Osmosensory transporter coiled coil LRO55_06265 PF03466 LysR substrate binding domain LRO55_06265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_06275 PF04403 Paraquat-inducible protein A LRO55_06280 PF02470 MlaD protein LRO55_06290 PF00576 HIUase/Transthyretin family LRO55_06300 PF00072 Response regulator receiver domain LRO55_06300 PF00486 Transcriptional regulatory protein, C terminal LRO55_06305 PF00672 HAMP domain LRO55_06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_06305 PF00512 His Kinase A (phospho-acceptor) domain LRO55_06315 PF00293 NUDIX domain LRO55_06320 PF01177 Asp/Glu/Hydantoin racemase LRO55_06325 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_06325 PF00107 Zinc-binding dehydrogenase LRO55_06330 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LRO55_06335 PF05853 beta-keto acid cleavage enzyme LRO55_06340 PF07690 Major Facilitator Superfamily LRO55_06355 PF03601 Conserved hypothetical protein 698 LRO55_06380 PF07995 Glucose / Sorbosone dehydrogenase LRO55_06385 PF01494 FAD binding domain LRO55_06390 PF07690 Major Facilitator Superfamily LRO55_06395 PF03466 LysR substrate binding domain LRO55_06395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_06405 PF00043 Glutathione S-transferase, C-terminal domain LRO55_06405 PF02798 Glutathione S-transferase, N-terminal domain LRO55_06420 PF00375 Sodium:dicarboxylate symporter family LRO55_06430 PF00753 Metallo-beta-lactamase superfamily LRO55_06430 PF16123 Hydroxyacylglutathione hydrolase C-terminus LRO55_06435 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_06440 PF00005 ABC transporter LRO55_06440 PF09383 NIL domain LRO55_06445 PF03180 NLPA lipoprotein LRO55_06450 PF02844 Phosphoribosylglycinamide synthetase, N domain LRO55_06450 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LRO55_06450 PF02843 Phosphoribosylglycinamide synthetase, C domain LRO55_06455 PF02142 MGS-like domain LRO55_06455 PF01808 AICARFT/IMPCHase bienzyme LRO55_06460 PF02954 Bacterial regulatory protein, Fis family LRO55_06480 PF13932 GidA associated domain LRO55_06480 PF01134 Glucose inhibited division protein A LRO55_06490 PF14403 Circularly permuted ATP-grasp type 2 LRO55_06500 PF08379 Bacterial transglutaminase-like N-terminal region LRO55_06500 PF01841 Transglutaminase-like superfamily LRO55_06510 PF01168 Alanine racemase, N-terminal domain LRO55_06510 PF00842 Alanine racemase, C-terminal domain LRO55_06515 PF03796 DnaB-like helicase C terminal domain LRO55_06515 PF00772 DnaB-like helicase N terminal domain LRO55_06520 PF01281 Ribosomal protein L9, N-terminal domain LRO55_06520 PF03948 Ribosomal protein L9, C-terminal domain LRO55_06525 PF01084 Ribosomal protein S18 LRO55_06530 PF01250 Ribosomal protein S6 LRO55_06535 PF01040 UbiA prenyltransferase family LRO55_06540 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LRO55_06545 PF00510 Cytochrome c oxidase subunit III LRO55_06550 PF00115 Cytochrome C and Quinol oxidase polypeptide I LRO55_06555 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LRO55_06555 PF06481 COX Aromatic Rich Motif LRO55_06565 PF00391 PEP-utilising enzyme, mobile domain LRO55_06565 PF02896 PEP-utilising enzyme, TIM barrel domain LRO55_06565 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LRO55_06570 PF03618 Kinase/pyrophosphorylase LRO55_06580 PF14883 Hypothetical glycosyl hydrolase family 13 LRO55_06580 PF01522 Polysaccharide deacetylase LRO55_06585 PF00535 Glycosyl transferase family 2 LRO55_06590 PF13994 PgaD-like protein LRO55_06600 PF00296 Luciferase-like monooxygenase LRO55_06615 PF03466 LysR substrate binding domain LRO55_06615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_06625 PF03462 PCRF domain LRO55_06625 PF00472 RF-1 domain LRO55_06630 PF13847 Methyltransferase domain LRO55_06630 PF17827 PrmC N-terminal domain LRO55_06635 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_06640 PF09084 NMT1/THI5 like LRO55_06645 PF12833 Helix-turn-helix domain LRO55_06650 PF00106 short chain dehydrogenase LRO55_06655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_06655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_06655 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_06660 PF01613 Flavin reductase like domain LRO55_06665 PF00899 ThiF family LRO55_06670 PF03109 ABC1 family LRO55_06675 PF02152 Dihydroneopterin aldolase LRO55_06685 PF03814 Potassium-transporting ATPase A subunit LRO55_06695 PF02669 K+-transporting ATPase, c chain LRO55_06700 PF13493 Domain of unknown function (DUF4118) LRO55_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_06700 PF00512 His Kinase A (phospho-acceptor) domain LRO55_06700 PF02702 Osmosensitive K+ channel His kinase sensor domain LRO55_06705 PF00486 Transcriptional regulatory protein, C terminal LRO55_06705 PF00072 Response regulator receiver domain LRO55_06710 PF00120 Glutamine synthetase, catalytic domain LRO55_06720 PF03232 Ubiquinone biosynthesis protein COQ7 LRO55_06725 PF07690 Major Facilitator Superfamily LRO55_06730 PF01103 Surface antigen LRO55_06730 PF07244 Surface antigen variable number repeat LRO55_06730 PF17243 POTRA domain TamA domain 1 LRO55_06740 PF10282 Lactonase, 7-bladed beta-propeller LRO55_06750 PF00330 Aconitase family (aconitate hydratase) LRO55_06750 PF06434 Aconitate hydratase 2 N-terminus LRO55_06750 PF11791 Aconitate B N-terminal domain LRO55_06760 PF00520 Ion transport protein LRO55_06760 PF00027 Cyclic nucleotide-binding domain LRO55_06765 PF07690 Major Facilitator Superfamily LRO55_06780 PF03466 LysR substrate binding domain LRO55_06780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_06785 PF04284 Protein of unknown function (DUF441) LRO55_06795 PF01479 S4 domain LRO55_06795 PF00849 RNA pseudouridylate synthase LRO55_06810 PF01479 S4 domain LRO55_06810 PF00849 RNA pseudouridylate synthase LRO55_06815 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LRO55_06820 PF01119 DNA mismatch repair protein, C-terminal domain LRO55_06820 PF08676 MutL C terminal dimerisation domain LRO55_06830 PF17209 Hfq protein LRO55_06840 PF00881 Nitroreductase family LRO55_06850 PF00149 Calcineurin-like phosphoesterase LRO55_06855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LRO55_06860 PF00749 tRNA synthetases class I (E and Q), catalytic domain LRO55_06860 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LRO55_06865 PF00117 Glutamine amidotransferase class-I LRO55_06865 PF02540 NAD synthase LRO55_06865 PF00958 GMP synthase C terminal domain LRO55_06870 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LRO55_06875 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LRO55_06880 PF13520 Amino acid permease LRO55_06885 PF00171 Aldehyde dehydrogenase family LRO55_06900 PF00465 Iron-containing alcohol dehydrogenase LRO55_06905 PF14493 Helix-turn-helix domain LRO55_06905 PF05970 PIF1-like helicase LRO55_06915 PF02110 Hydroxyethylthiazole kinase family LRO55_06930 PF11940 Domain of unknown function (DUF3458) Ig-like fold LRO55_06930 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LRO55_06930 PF01433 Peptidase family M1 domain LRO55_06945 PF00577 Outer membrane usher protein LRO55_06945 PF13954 PapC N-terminal domain LRO55_06945 PF13953 PapC C-terminal domain LRO55_06970 PF01817 Chorismate mutase type II LRO55_06975 PF01810 LysE type translocator LRO55_06995 PF00512 His Kinase A (phospho-acceptor) domain LRO55_06995 PF00672 HAMP domain LRO55_06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_07000 PF00486 Transcriptional regulatory protein, C terminal LRO55_07000 PF00072 Response regulator receiver domain LRO55_07025 PF00117 Glutamine amidotransferase class-I LRO55_07060 PF01638 HxlR-like helix-turn-helix LRO55_07080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_07080 PF03466 LysR substrate binding domain LRO55_07095 PF04076 Bacterial OB fold (BOF) protein LRO55_07110 PF04151 Bacterial pre-peptidase C-terminal domain LRO55_07115 PF12848 ABC transporter LRO55_07115 PF00005 ABC transporter LRO55_07120 PF00582 Universal stress protein family LRO55_07140 PF03594 Benzoate membrane transport protein LRO55_07145 PF01037 Lrp/AsnC ligand binding domain LRO55_07150 PF01810 LysE type translocator LRO55_07155 PF00923 Transaldolase/Fructose-6-phosphate aldolase LRO55_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_07160 PF03466 LysR substrate binding domain LRO55_07170 PF02803 Thiolase, C-terminal domain LRO55_07170 PF00108 Thiolase, N-terminal domain LRO55_07180 PF01575 MaoC like domain LRO55_07195 PF07690 Major Facilitator Superfamily LRO55_07210 PF12169 DNA polymerase III subunits gamma and tau domain III LRO55_07210 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LRO55_07210 PF12170 DNA polymerase III tau subunit V interacting with alpha LRO55_07215 PF05506 Domain of unknown function (DUF756) LRO55_07215 PF04185 Phosphoesterase family LRO55_07220 PF03061 Thioesterase superfamily LRO55_07225 PF00465 Iron-containing alcohol dehydrogenase LRO55_07240 PF01757 Acyltransferase family LRO55_07245 PF01451 Low molecular weight phosphotyrosine protein phosphatase LRO55_07250 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LRO55_07250 PF01565 FAD binding domain LRO55_07275 PF01645 Conserved region in glutamate synthase LRO55_07295 PF00577 Outer membrane usher protein LRO55_07295 PF13954 PapC N-terminal domain LRO55_07295 PF13953 PapC C-terminal domain LRO55_07305 PF12832 MFS_1 like family LRO55_07315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LRO55_07315 PF00289 Biotin carboxylase, N-terminal domain LRO55_07315 PF02785 Biotin carboxylase C-terminal domain LRO55_07320 PF00364 Biotin-requiring enzyme LRO55_07325 PF01220 Dehydroquinase class II LRO55_07330 PF13438 Domain of unknown function (DUF4113) LRO55_07330 PF00817 impB/mucB/samB family LRO55_07330 PF11799 impB/mucB/samB family C-terminal domain LRO55_07335 PF07715 TonB-dependent Receptor Plug Domain LRO55_07335 PF00593 TonB dependent receptor LRO55_07345 PF06276 Ferric iron reductase FhuF-like transporter LRO55_07345 PF04183 IucA / IucC family LRO55_07350 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LRO55_07355 PF07690 Major Facilitator Superfamily LRO55_07365 PF06276 Ferric iron reductase FhuF-like transporter LRO55_07365 PF04183 IucA / IucC family LRO55_07385 PF07715 TonB-dependent Receptor Plug Domain LRO55_07385 PF00593 TonB dependent receptor LRO55_07395 PF00005 ABC transporter LRO55_07410 PF13806 Rieske-like [2Fe-2S] domain LRO55_07410 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_07410 PF18267 Rubredoxin NAD+ reductase C-terminal domain LRO55_07410 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LRO55_07410 PF04324 BFD-like [2Fe-2S] binding domain LRO55_07410 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LRO55_07415 PF04324 BFD-like [2Fe-2S] binding domain LRO55_07415 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LRO55_07415 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LRO55_07415 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_07415 PF18267 Rubredoxin NAD+ reductase C-terminal domain LRO55_07420 PF01568 Molydopterin dinucleotide binding domain LRO55_07420 PF00384 Molybdopterin oxidoreductase LRO55_07420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LRO55_07420 PF04324 BFD-like [2Fe-2S] binding domain LRO55_07425 PF12804 MobA-like NTP transferase domain LRO55_07430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LRO55_07430 PF00384 Molybdopterin oxidoreductase LRO55_07430 PF01568 Molydopterin dinucleotide binding domain LRO55_07435 PF06463 Molybdenum Cofactor Synthesis C LRO55_07435 PF04055 Radical SAM superfamily LRO55_07445 PF02391 MoaE protein LRO55_07450 PF01967 MoaC family LRO55_07450 PF00994 Probable molybdopterin binding domain LRO55_07455 PF03453 MoeA N-terminal region (domain I and II) LRO55_07455 PF03454 MoeA C-terminal region (domain IV) LRO55_07455 PF00994 Probable molybdopterin binding domain LRO55_07460 PF01638 HxlR-like helix-turn-helix LRO55_07465 PF00392 Bacterial regulatory proteins, gntR family LRO55_07465 PF00155 Aminotransferase class I and II LRO55_07470 PF00892 EamA-like transporter family LRO55_07490 PF02635 DsrE/DsrF-like family LRO55_07495 PF16363 GDP-mannose 4,6 dehydratase LRO55_07500 PF10415 Fumarase C C-terminus LRO55_07500 PF00206 Lyase LRO55_07515 PF00857 Isochorismatase family LRO55_07525 PF01266 FAD dependent oxidoreductase LRO55_07535 PF02542 YgbB family LRO55_07545 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LRO55_07545 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LRO55_07550 PF00440 Bacterial regulatory proteins, tetR family LRO55_07555 PF02954 Bacterial regulatory protein, Fis family LRO55_07555 PF00072 Response regulator receiver domain LRO55_07555 PF00158 Sigma-54 interaction domain LRO55_07560 PF00989 PAS fold LRO55_07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_07560 PF00512 His Kinase A (phospho-acceptor) domain LRO55_07570 PF00919 Uncharacterized protein family UPF0004 LRO55_07570 PF18693 TRAM domain LRO55_07570 PF04055 Radical SAM superfamily LRO55_07575 PF00696 Amino acid kinase family LRO55_07580 PF01765 Ribosome recycling factor LRO55_07585 PF01255 Putative undecaprenyl diphosphate synthase LRO55_07595 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LRO55_07595 PF13288 DXP reductoisomerase C-terminal domain LRO55_07595 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LRO55_07600 PF17820 PDZ domain LRO55_07600 PF13180 PDZ domain LRO55_07600 PF02163 Peptidase family M50 LRO55_07605 PF07244 Surface antigen variable number repeat LRO55_07605 PF01103 Surface antigen LRO55_07615 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LRO55_07615 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_07620 PF07977 FabA-like domain LRO55_07625 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_07625 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LRO55_07640 PF02631 RecX family LRO55_07645 PF00154 recA bacterial DNA recombination protein LRO55_07650 PF01479 S4 domain LRO55_07655 PF13419 Haloacid dehalogenase-like hydrolase LRO55_07670 PF01037 Lrp/AsnC ligand binding domain LRO55_07675 PF00266 Aminotransferase class-V LRO55_07680 PF00324 Amino acid permease LRO55_07700 PF00082 Subtilase family LRO55_07700 PF05922 Peptidase inhibitor I9 LRO55_07705 PF00916 Sulfate permease family LRO55_07705 PF01740 STAS domain LRO55_07710 PF07995 Glucose / Sorbosone dehydrogenase LRO55_07720 PF00990 Diguanylate cyclase, GGDEF domain LRO55_07720 PF00563 EAL domain LRO55_07720 PF03707 Bacterial signalling protein N terminal repeat LRO55_07755 PF02378 Phosphotransferase system, EIIC LRO55_07755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LRO55_07760 PF00294 pfkB family carbohydrate kinase LRO55_07765 PF00381 PTS HPr component phosphorylation site LRO55_07765 PF02896 PEP-utilising enzyme, TIM barrel domain LRO55_07765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LRO55_07765 PF05524 PEP-utilising enzyme, N-terminal LRO55_07765 PF00391 PEP-utilising enzyme, mobile domain LRO55_07785 PF03928 Haem-degrading LRO55_07790 PF05525 Branched-chain amino acid transport protein LRO55_07795 PF00557 Metallopeptidase family M24 LRO55_07800 PF03466 LysR substrate binding domain LRO55_07800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_07810 PF00462 Glutaredoxin LRO55_07815 PF00202 Aminotransferase class-III LRO55_07820 PF01380 SIS domain LRO55_07820 PF00571 CBS domain LRO55_07845 PF00448 SRP54-type protein, GTPase domain LRO55_07845 PF02881 SRP54-type protein, helical bundle domain LRO55_07855 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LRO55_07865 PF08173 Membrane bound YbgT-like protein LRO55_07870 PF02322 Cytochrome bd terminal oxidase subunit II LRO55_07875 PF01654 Cytochrome bd terminal oxidase subunit I LRO55_07885 PF07290 Protein of unknown function (DUF1449) LRO55_07895 PF00294 pfkB family carbohydrate kinase LRO55_07900 PF07715 TonB-dependent Receptor Plug Domain LRO55_07900 PF00593 TonB dependent receptor LRO55_07905 PF05193 Peptidase M16 inactive domain LRO55_07905 PF08367 Peptidase M16C associated LRO55_07905 PF00675 Insulinase (Peptidase family M16) LRO55_07910 PF02253 Phospholipase A1 LRO55_07915 PF02386 Cation transport protein LRO55_07920 PF02254 TrkA-N domain LRO55_07920 PF02080 TrkA-C domain LRO55_07925 PF00585 C-terminal regulatory domain of Threonine dehydratase LRO55_07925 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_07930 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LRO55_07945 PF02774 Semialdehyde dehydrogenase, dimerisation domain LRO55_07945 PF01118 Semialdehyde dehydrogenase, NAD binding domain LRO55_07955 PF02617 ATP-dependent Clp protease adaptor protein ClpS LRO55_07960 PF07724 AAA domain (Cdc48 subfamily) LRO55_07960 PF00004 ATPase family associated with various cellular activities (AAA) LRO55_07960 PF17871 AAA lid domain LRO55_07960 PF02861 Clp amino terminal domain, pathogenicity island component LRO55_07960 PF10431 C-terminal, D2-small domain, of ClpB protein LRO55_07965 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LRO55_07970 PF00793 DAHP synthetase I family LRO55_07985 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LRO55_07985 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_08015 PF06418 CTP synthase N-terminus LRO55_08015 PF00117 Glutamine amidotransferase class-I LRO55_08020 PF00793 DAHP synthetase I family LRO55_08025 PF00113 Enolase, C-terminal TIM barrel domain LRO55_08025 PF03952 Enolase, N-terminal domain LRO55_08030 PF04239 Protein of unknown function (DUF421) LRO55_08045 PF00593 TonB dependent receptor LRO55_08045 PF07715 TonB-dependent Receptor Plug Domain LRO55_08050 PF04977 Septum formation initiator LRO55_08055 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LRO55_08060 PF01144 Coenzyme A transferase LRO55_08065 PF01144 Coenzyme A transferase LRO55_08070 PF02803 Thiolase, C-terminal domain LRO55_08070 PF00108 Thiolase, N-terminal domain LRO55_08075 PF10397 Adenylosuccinate lyase C-terminus LRO55_08075 PF00206 Lyase LRO55_08080 PF00561 alpha/beta hydrolase fold LRO55_08085 PF07690 Major Facilitator Superfamily LRO55_08090 PF02627 Carboxymuconolactone decarboxylase family LRO55_08095 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LRO55_08095 PF00775 Dioxygenase LRO55_08100 PF00775 Dioxygenase LRO55_08105 PF01487 Type I 3-dehydroquinase LRO55_08110 PF05048 Periplasmic copper-binding protein (NosD) LRO55_08115 PF04966 Carbohydrate-selective porin, OprB family LRO55_08120 PF13360 PQQ-like domain LRO55_08120 PF01011 PQQ enzyme repeat LRO55_08130 PF04143 Sulphur transport LRO55_08140 PF00753 Metallo-beta-lactamase superfamily LRO55_08145 PF01614 Bacterial transcriptional regulator LRO55_08145 PF09339 IclR helix-turn-helix domain LRO55_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_08150 PF03466 LysR substrate binding domain LRO55_08155 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_08155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_08155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_08170 PF00106 short chain dehydrogenase LRO55_08180 PF07690 Major Facilitator Superfamily LRO55_08190 PF01425 Amidase LRO55_08195 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LRO55_08210 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LRO55_08210 PF00355 Rieske [2Fe-2S] domain LRO55_08225 PF00111 2Fe-2S iron-sulfur cluster binding domain LRO55_08225 PF00175 Oxidoreductase NAD-binding domain LRO55_08230 PF01613 Flavin reductase like domain LRO55_08235 PF12833 Helix-turn-helix domain LRO55_08235 PF02311 AraC-like ligand binding domain LRO55_08240 PF02727 Copper amine oxidase, N2 domain LRO55_08240 PF07833 Copper amine oxidase N-terminal domain LRO55_08240 PF01179 Copper amine oxidase, enzyme domain LRO55_08240 PF02728 Copper amine oxidase, N3 domain LRO55_08250 PF00171 Aldehyde dehydrogenase family LRO55_08255 PF01804 Penicillin amidase LRO55_08260 PF12146 Serine aminopeptidase, S33 LRO55_08265 PF02803 Thiolase, C-terminal domain LRO55_08265 PF00108 Thiolase, N-terminal domain LRO55_08270 PF01144 Coenzyme A transferase LRO55_08275 PF01144 Coenzyme A transferase LRO55_08280 PF00775 Dioxygenase LRO55_08280 PF04444 Catechol dioxygenase N terminus LRO55_08285 PF02426 Muconolactone delta-isomerase LRO55_08290 PF13378 Enolase C-terminal domain-like LRO55_08290 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LRO55_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_08295 PF03466 LysR substrate binding domain LRO55_08305 PF07729 FCD domain LRO55_08305 PF00392 Bacterial regulatory proteins, gntR family LRO55_08310 PF00920 Dehydratase family LRO55_08315 PF07690 Major Facilitator Superfamily LRO55_08325 PF00171 Aldehyde dehydrogenase family LRO55_08330 PF00561 alpha/beta hydrolase fold LRO55_08340 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_08350 PF12706 Beta-lactamase superfamily domain LRO55_08355 PF00440 Bacterial regulatory proteins, tetR family LRO55_08355 PF08359 YsiA-like protein, C-terminal region LRO55_08375 PF14765 Polyketide synthase dehydratase LRO55_08375 PF00550 Phosphopantetheine attachment site LRO55_08375 PF08659 KR domain LRO55_08375 PF00109 Beta-ketoacyl synthase, N-terminal domain LRO55_08375 PF16197 Ketoacyl-synthetase C-terminal extension LRO55_08375 PF00698 Acyl transferase domain LRO55_08375 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_08375 PF02801 Beta-ketoacyl synthase, C-terminal domain LRO55_08380 PF00106 short chain dehydrogenase LRO55_08395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LRO55_08395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LRO55_08395 PF00378 Enoyl-CoA hydratase/isomerase LRO55_08400 PF12146 Serine aminopeptidase, S33 LRO55_08405 PF00501 AMP-binding enzyme LRO55_08405 PF13193 AMP-binding enzyme C-terminal domain LRO55_08410 PF05199 GMC oxidoreductase LRO55_08415 PF00561 alpha/beta hydrolase fold LRO55_08420 PF00561 alpha/beta hydrolase fold LRO55_08430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LRO55_08435 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_08435 PF12833 Helix-turn-helix domain LRO55_08440 PF00106 short chain dehydrogenase LRO55_08450 PF00106 short chain dehydrogenase LRO55_08455 PF01638 HxlR-like helix-turn-helix LRO55_08460 PF01638 HxlR-like helix-turn-helix LRO55_08465 PF05368 NmrA-like family LRO55_08470 PF12833 Helix-turn-helix domain LRO55_08470 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_08480 PF06314 Acetoacetate decarboxylase (ADC) LRO55_08490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LRO55_08505 PF00440 Bacterial regulatory proteins, tetR family LRO55_08575 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) LRO55_08590 PF03055 Retinal pigment epithelial membrane protein LRO55_08615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_08615 PF03466 LysR substrate binding domain LRO55_08620 PF00202 Aminotransferase class-III LRO55_08625 PF00171 Aldehyde dehydrogenase family LRO55_08630 PF00324 Amino acid permease LRO55_08635 PF07690 Major Facilitator Superfamily LRO55_08640 PF04909 Amidohydrolase LRO55_08650 PF00392 Bacterial regulatory proteins, gntR family LRO55_08650 PF07702 UTRA domain LRO55_08665 PF13533 Biotin-lipoyl like LRO55_08690 PF14863 Alkyl sulfatase dimerisation LRO55_08690 PF00753 Metallo-beta-lactamase superfamily LRO55_08690 PF14864 Alkyl sulfatase C-terminal LRO55_08700 PF00313 'Cold-shock' DNA-binding domain LRO55_08705 PF01638 HxlR-like helix-turn-helix LRO55_08715 PF06719 AraC-type transcriptional regulator N-terminus LRO55_08715 PF12833 Helix-turn-helix domain LRO55_08720 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_08720 PF00107 Zinc-binding dehydrogenase LRO55_08730 PF12146 Serine aminopeptidase, S33 LRO55_08735 PF02525 Flavodoxin-like fold LRO55_08740 PF12833 Helix-turn-helix domain LRO55_08740 PF06719 AraC-type transcriptional regulator N-terminus LRO55_08760 PF01032 FecCD transport family LRO55_08765 PF00005 ABC transporter LRO55_08785 PF14572 Phosphoribosyl synthetase-associated domain LRO55_08785 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LRO55_08790 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LRO55_08810 PF03472 Autoinducer binding domain LRO55_08810 PF00196 Bacterial regulatory proteins, luxR family LRO55_08815 PF01425 Amidase LRO55_08820 PF13533 Biotin-lipoyl like LRO55_08825 PF07690 Major Facilitator Superfamily LRO55_08850 PF13291 ACT domain LRO55_08850 PF04607 Region found in RelA / SpoT proteins LRO55_08850 PF02824 TGS domain LRO55_08890 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family LRO55_08910 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_08915 PF00005 ABC transporter LRO55_08920 PF03544 Gram-negative bacterial TonB protein C-terminal LRO55_08925 PF01618 MotA/TolQ/ExbB proton channel family LRO55_08930 PF02472 Biopolymer transport protein ExbD/TolR LRO55_08940 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LRO55_08950 PF00593 TonB dependent receptor LRO55_08950 PF07715 TonB-dependent Receptor Plug Domain LRO55_08955 PF00296 Luciferase-like monooxygenase LRO55_08960 PF00248 Aldo/keto reductase family LRO55_08965 PF07715 TonB-dependent Receptor Plug Domain LRO55_08965 PF00593 TonB dependent receptor LRO55_08970 PF00884 Sulfatase LRO55_08975 PF00027 Cyclic nucleotide-binding domain LRO55_08975 PF13545 Crp-like helix-turn-helix domain LRO55_08980 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LRO55_08995 PF07969 Amidohydrolase family LRO55_09010 PF00005 ABC transporter LRO55_09010 PF17755 UvrA DNA-binding domain LRO55_09010 PF17760 UvrA interaction domain LRO55_09015 PF09905 DNA-binding protein VF530 LRO55_09020 PF00296 Luciferase-like monooxygenase LRO55_09025 PF00593 TonB dependent receptor LRO55_09025 PF07715 TonB-dependent Receptor Plug Domain LRO55_09035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LRO55_09040 PF02472 Biopolymer transport protein ExbD/TolR LRO55_09045 PF01618 MotA/TolQ/ExbB proton channel family LRO55_09050 PF03544 Gram-negative bacterial TonB protein C-terminal LRO55_09055 PF00296 Luciferase-like monooxygenase LRO55_09060 PF09084 NMT1/THI5 like LRO55_09065 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_09070 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_09075 PF00005 ABC transporter LRO55_09080 PF02416 mttA/Hcf106 family LRO55_09085 PF02416 mttA/Hcf106 family LRO55_09090 PF00902 Sec-independent protein translocase protein (TatC) LRO55_09095 PF00158 Sigma-54 interaction domain LRO55_09100 PF00296 Luciferase-like monooxygenase LRO55_09110 PF07715 TonB-dependent Receptor Plug Domain LRO55_09110 PF00593 TonB dependent receptor LRO55_09120 PF00664 ABC transporter transmembrane region LRO55_09120 PF00005 ABC transporter LRO55_09125 PF00664 ABC transporter transmembrane region LRO55_09125 PF00005 ABC transporter LRO55_09135 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LRO55_09135 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_09135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_09140 PF00005 ABC transporter LRO55_09140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LRO55_09145 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_09145 PF12911 N-terminal TM domain of oligopeptide transport permease C LRO55_09150 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_09155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LRO55_09160 PF00296 Luciferase-like monooxygenase LRO55_09180 PF16970 Type-1 fimbrial protein, A LRO55_09185 PF02753 Pili assembly chaperone PapD, C-terminal domain LRO55_09185 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LRO55_09190 PF13954 PapC N-terminal domain LRO55_09190 PF13953 PapC C-terminal domain LRO55_09190 PF00577 Outer membrane usher protein LRO55_09205 PF00107 Zinc-binding dehydrogenase LRO55_09205 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_09215 PF00199 Catalase LRO55_09235 PF13091 PLD-like domain LRO55_09245 PF00672 HAMP domain LRO55_09245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_09245 PF00512 His Kinase A (phospho-acceptor) domain LRO55_09250 PF00072 Response regulator receiver domain LRO55_09250 PF00486 Transcriptional regulatory protein, C terminal LRO55_09255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LRO55_09255 PF00529 HlyD membrane-fusion protein of T1SS LRO55_09260 PF00873 AcrB/AcrD/AcrF family LRO55_09275 PF01244 Membrane dipeptidase (Peptidase family M19) LRO55_09280 PF13186 Iron-sulfur cluster-binding domain LRO55_09280 PF04055 Radical SAM superfamily LRO55_09285 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LRO55_09290 PF03070 TENA/THI-4/PQQC family LRO55_09295 PF12706 Beta-lactamase superfamily domain LRO55_09300 PF08042 PqqA family LRO55_09305 PF00149 Calcineurin-like phosphoesterase LRO55_09315 PF00593 TonB dependent receptor LRO55_09315 PF07715 TonB-dependent Receptor Plug Domain LRO55_09320 PF00873 AcrB/AcrD/AcrF family LRO55_09325 PF00857 Isochorismatase family LRO55_09325 PF00550 Phosphopantetheine attachment site LRO55_09335 PF00501 AMP-binding enzyme LRO55_09335 PF13193 AMP-binding enzyme C-terminal domain LRO55_09340 PF00425 chorismate binding enzyme LRO55_09345 PF00106 short chain dehydrogenase LRO55_09355 PF03621 MbtH-like protein LRO55_09360 PF00501 AMP-binding enzyme LRO55_09360 PF00668 Condensation domain LRO55_09360 PF00550 Phosphopantetheine attachment site LRO55_09360 PF00975 Thioesterase domain LRO55_09360 PF13193 AMP-binding enzyme C-terminal domain LRO55_09365 PF05977 Transmembrane secretion effector LRO55_09370 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LRO55_09370 PF01648 4'-phosphopantetheinyl transferase superfamily LRO55_09385 PF00005 ABC transporter LRO55_09385 PF03459 TOBE domain LRO55_09390 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_09400 PF03459 TOBE domain LRO55_09400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_09405 PF00355 Rieske [2Fe-2S] domain LRO55_09405 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LRO55_09410 PF00866 Ring hydroxylating beta subunit LRO55_09415 PF00175 Oxidoreductase NAD-binding domain LRO55_09415 PF00111 2Fe-2S iron-sulfur cluster binding domain LRO55_09415 PF00970 Oxidoreductase FAD-binding domain LRO55_09420 PF14525 AraC-binding-like domain LRO55_09420 PF12833 Helix-turn-helix domain LRO55_09430 PF01613 Flavin reductase like domain LRO55_09445 PF01738 Dienelactone hydrolase family LRO55_09455 PF07690 Major Facilitator Superfamily LRO55_09460 PF06719 AraC-type transcriptional regulator N-terminus LRO55_09460 PF12833 Helix-turn-helix domain LRO55_09545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_09545 PF03466 LysR substrate binding domain LRO55_09550 PF01144 Coenzyme A transferase LRO55_09555 PF01144 Coenzyme A transferase LRO55_09560 PF02667 Short chain fatty acid transporter LRO55_09565 PF02803 Thiolase, C-terminal domain LRO55_09565 PF00108 Thiolase, N-terminal domain LRO55_09570 PF03466 LysR substrate binding domain LRO55_09570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_09575 PF03466 LysR substrate binding domain LRO55_09575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_09590 PF10415 Fumarase C C-terminus LRO55_09590 PF00206 Lyase LRO55_09600 PF00083 Sugar (and other) transporter LRO55_09615 PF00005 ABC transporter LRO55_09620 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_09625 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LRO55_09640 PF07702 UTRA domain LRO55_09640 PF00392 Bacterial regulatory proteins, gntR family LRO55_09650 PF12833 Helix-turn-helix domain LRO55_09650 PF06445 GyrI-like small molecule binding domain LRO55_09665 PF01925 Sulfite exporter TauE/SafE LRO55_09680 PF00753 Metallo-beta-lactamase superfamily LRO55_09680 PF04273 Putative phosphatase (DUF442) LRO55_09685 PF02954 Bacterial regulatory protein, Fis family LRO55_09685 PF00072 Response regulator receiver domain LRO55_09685 PF00158 Sigma-54 interaction domain LRO55_09700 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_09700 PF00107 Zinc-binding dehydrogenase LRO55_09705 PF00106 short chain dehydrogenase LRO55_09710 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_09710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LRO55_09715 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LRO55_09715 PF00364 Biotin-requiring enzyme LRO55_09715 PF02817 e3 binding domain LRO55_09720 PF02779 Transketolase, pyrimidine binding domain LRO55_09720 PF02780 Transketolase, C-terminal domain LRO55_09725 PF00676 Dehydrogenase E1 component LRO55_09730 PF04055 Radical SAM superfamily LRO55_09745 PF00990 Diguanylate cyclase, GGDEF domain LRO55_09745 PF08448 PAS fold LRO55_09755 PF01264 Chorismate synthase LRO55_09760 PF05175 Methyltransferase small domain LRO55_09765 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_09775 PF00004 ATPase family associated with various cellular activities (AAA) LRO55_09775 PF17862 AAA+ lid domain LRO55_09775 PF01434 Peptidase family M41 LRO55_09785 PF05166 YcgL domain LRO55_09805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_09805 PF03466 LysR substrate binding domain LRO55_09810 PF02525 Flavodoxin-like fold LRO55_09815 PF01612 3'-5' exonuclease LRO55_09815 PF00570 HRDC domain LRO55_09820 PF13662 Toprim domain LRO55_09820 PF02132 RecR protein LRO55_09825 PF02575 YbaB/EbfC DNA-binding family LRO55_09835 PF01053 Cys/Met metabolism PLP-dependent enzyme LRO55_09845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LRO55_09845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LRO55_09855 PF01230 HIT domain LRO55_09880 PF02684 Lipid-A-disaccharide synthetase LRO55_09885 PF00593 TonB dependent receptor LRO55_09885 PF07715 TonB-dependent Receptor Plug Domain LRO55_09905 PF01925 Sulfite exporter TauE/SafE LRO55_09910 PF00793 DAHP synthetase I family LRO55_09915 PF02654 Cobalamin-5-phosphate synthase LRO55_09925 PF00300 Histidine phosphatase superfamily (branch 1) LRO55_09930 PF02277 Phosphoribosyltransferase LRO55_09935 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LRO55_09945 PF13419 Haloacid dehalogenase-like hydrolase LRO55_09950 PF04073 Aminoacyl-tRNA editing domain LRO55_09960 PF03109 ABC1 family LRO55_09965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_09965 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_09965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_09970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_09970 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_09970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_09975 PF00487 Fatty acid desaturase LRO55_09980 PF12852 Cupin LRO55_09980 PF12833 Helix-turn-helix domain LRO55_09985 PF00639 PPIC-type PPIASE domain LRO55_09985 PF09312 SurA N-terminal domain LRO55_09990 PF00216 Bacterial DNA-binding protein LRO55_10005 PF02082 Transcriptional regulator LRO55_10010 PF00266 Aminotransferase class-V LRO55_10015 PF01592 NifU-like N terminal domain LRO55_10020 PF01521 Iron-sulphur cluster biosynthesis LRO55_10025 PF07743 HSCB C-terminal oligomerisation domain LRO55_10025 PF00226 DnaJ domain LRO55_10030 PF00012 Hsp70 protein LRO55_10035 PF00111 2Fe-2S iron-sulfur cluster binding domain LRO55_10040 PF00211 Adenylate and Guanylate cyclase catalytic domain LRO55_10050 PF02559 CarD-like/TRCF domain LRO55_10050 PF00270 DEAD/DEAH box helicase LRO55_10050 PF00271 Helicase conserved C-terminal domain LRO55_10050 PF03461 TRCF domain LRO55_10050 PF17757 UvrB interaction domain LRO55_10070 PF03737 Aldolase/RraA LRO55_10075 PF13460 NAD(P)H-binding LRO55_10080 PF01649 Ribosomal protein S20 LRO55_10090 PF00459 Inositol monophosphatase family LRO55_10105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LRO55_10105 PF00005 ABC transporter LRO55_10110 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_10110 PF12911 N-terminal TM domain of oligopeptide transport permease C LRO55_10115 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_10120 PF01432 Peptidase family M3 LRO55_10125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LRO55_10135 PF00593 TonB dependent receptor LRO55_10135 PF07715 TonB-dependent Receptor Plug Domain LRO55_10140 PF03544 Gram-negative bacterial TonB protein C-terminal LRO55_10145 PF01618 MotA/TolQ/ExbB proton channel family LRO55_10150 PF02472 Biopolymer transport protein ExbD/TolR LRO55_10155 PF02472 Biopolymer transport protein ExbD/TolR LRO55_10165 PF01274 Malate synthase LRO55_10170 PF03969 AFG1-like ATPase LRO55_10180 PF00743 Flavin-binding monooxygenase-like LRO55_10185 PF03956 Lysine exporter LysO LRO55_10190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LRO55_10200 PF00216 Bacterial DNA-binding protein LRO55_10205 PF00575 S1 RNA binding domain LRO55_10210 PF02224 Cytidylate kinase LRO55_10220 PF14437 MafB19-like deaminase LRO55_10230 PF03167 Uracil DNA glycosylase superfamily LRO55_10240 PF03934 Type II secretion system (T2SS), protein K LRO55_10245 PF07963 Prokaryotic N-terminal methylation motif LRO55_10245 PF11612 Type II secretion system (T2SS), protein J LRO55_10250 PF07963 Prokaryotic N-terminal methylation motif LRO55_10250 PF02501 Type II secretion system (T2SS), protein I LRO55_10265 PF01026 TatD related DNase LRO55_10275 PF09115 DNA polymerase III, delta subunit, C terminal LRO55_10280 PF02348 Cytidylyltransferase LRO55_10285 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LRO55_10290 PF00664 ABC transporter transmembrane region LRO55_10290 PF00005 ABC transporter LRO55_10300 PF01618 MotA/TolQ/ExbB proton channel family LRO55_10305 PF02195 ParB-like nuclease domain LRO55_10305 PF17762 HTH domain found in ParB protein LRO55_10310 PF13614 AAA domain LRO55_10315 PF02527 rRNA small subunit methyltransferase G LRO55_10320 PF00483 Nucleotidyl transferase LRO55_10325 PF01636 Phosphotransferase enzyme family LRO55_10330 PF04453 LPS transport system D LRO55_10330 PF03968 OstA-like protein LRO55_10335 PF09312 SurA N-terminal domain LRO55_10335 PF00639 PPIC-type PPIASE domain LRO55_10340 PF01116 Fructose-bisphosphate aldolase class-II LRO55_10350 PF00162 Phosphoglycerate kinase LRO55_10360 PF02545 Maf-like protein LRO55_10365 PF08007 Cupin superfamily protein LRO55_10380 PF00375 Sodium:dicarboxylate symporter family LRO55_10385 PF06912 Protein of unknown function (DUF1275) LRO55_10390 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LRO55_10395 PF00664 ABC transporter transmembrane region LRO55_10395 PF00005 ABC transporter LRO55_10405 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_10405 PF12833 Helix-turn-helix domain LRO55_10410 PF01597 Glycine cleavage H-protein LRO55_10415 PF02146 Sir2 family LRO55_10420 PF00474 Sodium:solute symporter family LRO55_10425 PF01037 Lrp/AsnC ligand binding domain LRO55_10430 PF01619 Proline dehydrogenase LRO55_10430 PF00171 Aldehyde dehydrogenase family LRO55_10430 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LRO55_10430 PF14850 DNA-binding domain of Proline dehydrogenase LRO55_10435 PF04229 GrpB protein LRO55_10440 PF05958 tRNA (Uracil-5-)-methyltransferase LRO55_10450 PF09992 Phosphodiester glycosidase LRO55_10460 PF04264 YceI-like domain LRO55_10470 PF02779 Transketolase, pyrimidine binding domain LRO55_10470 PF02780 Transketolase, C-terminal domain LRO55_10470 PF00456 Transketolase, thiamine diphosphate binding domain LRO55_10475 PF02773 S-adenosylmethionine synthetase, C-terminal domain LRO55_10475 PF00438 S-adenosylmethionine synthetase, N-terminal domain LRO55_10475 PF02772 S-adenosylmethionine synthetase, central domain LRO55_10495 PF00905 Penicillin binding protein transpeptidase domain LRO55_10510 PF02075 Crossover junction endodeoxyribonuclease RuvC LRO55_10515 PF01256 Carbohydrate kinase LRO55_10515 PF03853 YjeF-related protein N-terminus LRO55_10520 PF08331 Domain of unknown function (DUF1730) LRO55_10525 PF06968 Biotin and Thiamin Synthesis associated domain LRO55_10525 PF04055 Radical SAM superfamily LRO55_10540 PF16970 Type-1 fimbrial protein, A LRO55_10545 PF02753 Pili assembly chaperone PapD, C-terminal domain LRO55_10545 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LRO55_10550 PF00577 Outer membrane usher protein LRO55_10550 PF13954 PapC N-terminal domain LRO55_10550 PF13953 PapC C-terminal domain LRO55_10555 PF00419 Fimbrial protein LRO55_10565 PF12833 Helix-turn-helix domain LRO55_10565 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_10575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_10575 PF03466 LysR substrate binding domain LRO55_10580 PF00892 EamA-like transporter family LRO55_10590 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LRO55_10600 PF03466 LysR substrate binding domain LRO55_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_10615 PF00440 Bacterial regulatory proteins, tetR family LRO55_10625 PF01709 Transcriptional regulator LRO55_10630 PF01037 Lrp/AsnC ligand binding domain LRO55_10640 PF00005 ABC transporter LRO55_10645 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_10650 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_10655 PF00497 Bacterial extracellular solute-binding proteins, family 3 LRO55_10665 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LRO55_10665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_10675 PF00296 Luciferase-like monooxygenase LRO55_10680 PF03180 NLPA lipoprotein LRO55_10685 PF03180 NLPA lipoprotein LRO55_10690 PF09383 NIL domain LRO55_10690 PF00005 ABC transporter LRO55_10695 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_10700 PF01926 50S ribosome-binding GTPase LRO55_10700 PF06071 Protein of unknown function (DUF933) LRO55_10725 PF03591 AzlC protein LRO55_10730 PF05437 Branched-chain amino acid transport protein (AzlD) LRO55_10740 PF02222 ATP-grasp domain LRO55_10745 PF01909 Nucleotidyltransferase domain LRO55_10745 PF01966 HD domain LRO55_10745 PF08335 GlnD PII-uridylyltransferase LRO55_10750 PF00155 Aminotransferase class I and II LRO55_10760 PF02311 AraC-like ligand binding domain LRO55_10760 PF12833 Helix-turn-helix domain LRO55_10765 PF00255 Glutathione peroxidase LRO55_10770 PF01641 SelR domain LRO55_10775 PF00155 Aminotransferase class I and II LRO55_10780 PF00375 Sodium:dicarboxylate symporter family LRO55_10785 PF00710 Asparaginase, N-terminal LRO55_10785 PF17763 Glutaminase/Asparaginase C-terminal domain LRO55_10790 PF07733 Bacterial DNA polymerase III alpha NTPase domain LRO55_10790 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LRO55_10790 PF14579 Helix-hairpin-helix motif LRO55_10790 PF02811 PHP domain LRO55_10790 PF01336 OB-fold nucleic acid binding domain LRO55_10795 PF00588 SpoU rRNA Methylase family LRO55_10800 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_10815 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_10815 PF13192 Thioredoxin domain LRO55_10830 PF03466 LysR substrate binding domain LRO55_10830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_10835 PF03358 NADPH-dependent FMN reductase LRO55_10840 PF01758 Sodium Bile acid symporter family LRO55_10850 PF01022 Bacterial regulatory protein, arsR family LRO55_10855 PF03960 ArsC family LRO55_10865 PF01979 Amidohydrolase family LRO55_10865 PF13382 Adenine deaminase C-terminal domain LRO55_10875 PF03466 LysR substrate binding domain LRO55_10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_10885 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LRO55_10890 PF01177 Asp/Glu/Hydantoin racemase LRO55_10895 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LRO55_10900 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_10905 PF00005 ABC transporter LRO55_10910 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LRO55_10920 PF00083 Sugar (and other) transporter LRO55_10925 PF00296 Luciferase-like monooxygenase LRO55_10930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_10930 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_10930 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LRO55_10940 PF01654 Cytochrome bd terminal oxidase subunit I LRO55_10945 PF02322 Cytochrome bd terminal oxidase subunit II LRO55_10955 PF00392 Bacterial regulatory proteins, gntR family LRO55_10955 PF00155 Aminotransferase class I and II LRO55_10960 PF03466 LysR substrate binding domain LRO55_10960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_10975 PF00698 Acyl transferase domain LRO55_10980 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG LRO55_10990 PF01039 Carboxyl transferase domain LRO55_10995 PF06857 Malonate decarboxylase delta subunit (MdcD) LRO55_11000 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LRO55_11005 PF16957 Malonate decarboxylase, alpha subunit, transporter LRO55_11010 PF07690 Major Facilitator Superfamily LRO55_11025 PF00392 Bacterial regulatory proteins, gntR family LRO55_11025 PF00155 Aminotransferase class I and II LRO55_11030 PF04172 LrgB-like family LRO55_11035 PF03788 LrgA family LRO55_11040 PF03466 LysR substrate binding domain LRO55_11040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_11045 PF14834 Glutathione S-transferase, C-terminal domain LRO55_11045 PF02798 Glutathione S-transferase, N-terminal domain LRO55_11050 PF02798 Glutathione S-transferase, N-terminal domain LRO55_11070 PF00581 Rhodanese-like domain LRO55_11075 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_11085 PF00266 Aminotransferase class-V LRO55_11095 PF01810 LysE type translocator LRO55_11100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LRO55_11100 PF01411 tRNA synthetases class II (A) LRO55_11100 PF02272 DHHA1 domain LRO55_11105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_11105 PF03466 LysR substrate binding domain LRO55_11115 PF00497 Bacterial extracellular solute-binding proteins, family 3 LRO55_11120 PF00497 Bacterial extracellular solute-binding proteins, family 3 LRO55_11125 PF00005 ABC transporter LRO55_11130 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_11135 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_11145 PF14542 GCN5-related N-acetyl-transferase LRO55_11150 PF07690 Major Facilitator Superfamily LRO55_11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_11155 PF03466 LysR substrate binding domain LRO55_11165 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LRO55_11170 PF00072 Response regulator receiver domain LRO55_11185 PF01037 Lrp/AsnC ligand binding domain LRO55_11185 PF13404 AsnC-type helix-turn-helix domain LRO55_11195 PF00717 Peptidase S24-like LRO55_11225 PF18011 C-terminal domain found in long catalases LRO55_11225 PF00199 Catalase LRO55_11225 PF06628 Catalase-related immune-responsive LRO55_11260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_11260 PF03466 LysR substrate binding domain LRO55_11270 PF07690 Major Facilitator Superfamily LRO55_11280 PF13649 Methyltransferase domain LRO55_11285 PF00501 AMP-binding enzyme LRO55_11285 PF13193 AMP-binding enzyme C-terminal domain LRO55_11290 PF00440 Bacterial regulatory proteins, tetR family LRO55_11295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_11295 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_11295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_11300 PF01039 Carboxyl transferase domain LRO55_11305 PF00378 Enoyl-CoA hydratase/isomerase LRO55_11310 PF02785 Biotin carboxylase C-terminal domain LRO55_11310 PF18140 Propionyl-coenzyme A carboxylase BT domain LRO55_11310 PF00289 Biotin carboxylase, N-terminal domain LRO55_11310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LRO55_11310 PF00364 Biotin-requiring enzyme LRO55_11315 PF00682 HMGL-like LRO55_11320 PF03466 LysR substrate binding domain LRO55_11320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_11335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_11335 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_11335 PF12806 Acetyl-CoA dehydrogenase C-terminal like LRO55_11335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_11345 PF07690 Major Facilitator Superfamily LRO55_11355 PF01144 Coenzyme A transferase LRO55_11360 PF01144 Coenzyme A transferase LRO55_11365 PF07690 Major Facilitator Superfamily LRO55_11370 PF07690 Major Facilitator Superfamily LRO55_11375 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_11375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_11375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_11380 PF00378 Enoyl-CoA hydratase/isomerase LRO55_11390 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LRO55_11390 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LRO55_11390 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LRO55_11395 PF02803 Thiolase, C-terminal domain LRO55_11395 PF00108 Thiolase, N-terminal domain LRO55_11400 PF09339 IclR helix-turn-helix domain LRO55_11410 PF01810 LysE type translocator LRO55_11415 PF16861 Carbamoyltransferase C-terminus LRO55_11415 PF02543 Carbamoyltransferase N-terminus LRO55_11425 PF03060 Nitronate monooxygenase LRO55_11430 PF00378 Enoyl-CoA hydratase/isomerase LRO55_11435 PF09339 IclR helix-turn-helix domain LRO55_11440 PF02515 CoA-transferase family III LRO55_11445 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_11445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_11445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_11450 PF07690 Major Facilitator Superfamily LRO55_11455 PF01494 FAD binding domain LRO55_11460 PF01614 Bacterial transcriptional regulator LRO55_11460 PF09339 IclR helix-turn-helix domain LRO55_11510 PF03315 Serine dehydratase beta chain LRO55_11510 PF03313 Serine dehydratase alpha chain LRO55_11525 PF09278 MerR, DNA binding LRO55_11525 PF00376 MerR family regulatory protein LRO55_11535 PF02677 Epoxyqueuosine reductase QueH LRO55_11540 PF00392 Bacterial regulatory proteins, gntR family LRO55_11540 PF00155 Aminotransferase class I and II LRO55_11555 PF07690 Major Facilitator Superfamily LRO55_11560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LRO55_11570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_11570 PF03466 LysR substrate binding domain LRO55_11590 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LRO55_11595 PF06812 ImpA, N-terminal, type VI secretion system LRO55_11600 PF07724 AAA domain (Cdc48 subfamily) LRO55_11600 PF00004 ATPase family associated with various cellular activities (AAA) LRO55_11600 PF17871 AAA lid domain LRO55_11600 PF10431 C-terminal, D2-small domain, of ClpB protein LRO55_11615 PF00691 OmpA family LRO55_11615 PF18393 MotY N-terminal domain LRO55_11625 PF06744 Type VI secretion protein IcmF C-terminal LRO55_11625 PF14331 ImcF-related N-terminal domain LRO55_11625 PF06761 Intracellular multiplication and human macrophage-killing LRO55_11640 PF05947 Type VI secretion system, TssF LRO55_11655 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LRO55_11695 PF13296 Putative type VI secretion system Rhs element Vgr LRO55_11695 PF04717 Type VI secretion system, phage-baseplate injector LRO55_11695 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LRO55_11705 PF05593 RHS Repeat LRO55_11705 PF03527 RHS protein LRO55_11710 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LRO55_11710 PF04717 Type VI secretion system, phage-baseplate injector LRO55_11710 PF13296 Putative type VI secretion system Rhs element Vgr LRO55_11715 PF03466 LysR substrate binding domain LRO55_11715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_11720 PF07690 Major Facilitator Superfamily LRO55_11735 PF00005 ABC transporter LRO55_11740 PF00497 Bacterial extracellular solute-binding proteins, family 3 LRO55_11745 PF01425 Amidase LRO55_11750 PF08753 NikR C terminal nickel binding domain LRO55_11750 PF01402 Ribbon-helix-helix protein, copG family LRO55_11765 PF01638 HxlR-like helix-turn-helix LRO55_11770 PF02525 Flavodoxin-like fold LRO55_11775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LRO55_11775 PF02785 Biotin carboxylase C-terminal domain LRO55_11775 PF00289 Biotin carboxylase, N-terminal domain LRO55_11790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LRO55_11790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LRO55_11795 PF00892 EamA-like transporter family LRO55_11840 PF00654 Voltage gated chloride channel LRO55_11845 PF02785 Biotin carboxylase C-terminal domain LRO55_11845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LRO55_11845 PF00364 Biotin-requiring enzyme LRO55_11845 PF00289 Biotin carboxylase, N-terminal domain LRO55_11855 PF07286 Protein of unknown function (DUF1445) LRO55_11860 PF03746 LamB/YcsF family LRO55_11865 PF01566 Natural resistance-associated macrophage protein LRO55_11870 PF03466 LysR substrate binding domain LRO55_11870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_11915 PF14278 Transcriptional regulator C-terminal region LRO55_11915 PF00440 Bacterial regulatory proteins, tetR family LRO55_11930 PF00440 Bacterial regulatory proteins, tetR family LRO55_11940 PF00561 alpha/beta hydrolase fold LRO55_11945 PF07859 alpha/beta hydrolase fold LRO55_11950 PF03797 Autotransporter beta-domain LRO55_11950 PF12951 Passenger-associated-transport-repeat LRO55_11950 PF00082 Subtilase family LRO55_11955 PF07681 DoxX LRO55_11960 PF00990 Diguanylate cyclase, GGDEF domain LRO55_11960 PF03707 Bacterial signalling protein N terminal repeat LRO55_11960 PF00563 EAL domain LRO55_11970 PF16220 Domain of unknown function (DUF4880) LRO55_11970 PF04773 FecR protein LRO55_11975 PF07715 TonB-dependent Receptor Plug Domain LRO55_11975 PF00593 TonB dependent receptor LRO55_12020 PF01425 Amidase LRO55_12025 PF02979 Nitrile hydratase, alpha chain LRO55_12030 PF02211 Nitrile hydratase beta subunit LRO55_12035 PF02492 CobW/HypB/UreG, nucleotide-binding domain LRO55_12035 PF07683 Cobalamin synthesis protein cobW C-terminal domain LRO55_12040 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LRO55_12045 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_12050 PF00005 ABC transporter LRO55_12055 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_12060 PF01177 Asp/Glu/Hydantoin racemase LRO55_12070 PF01037 Lrp/AsnC ligand binding domain LRO55_12075 PF00892 EamA-like transporter family LRO55_12125 PF13520 Amino acid permease LRO55_12130 PF01636 Phosphotransferase enzyme family LRO55_12140 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_12140 PF12833 Helix-turn-helix domain LRO55_12145 PF00202 Aminotransferase class-III LRO55_12175 PF03061 Thioesterase superfamily LRO55_12180 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_12185 PF07848 PaaX-like protein LRO55_12185 PF08223 PaaX-like protein C-terminal domain LRO55_12190 PF00501 AMP-binding enzyme LRO55_12190 PF14535 AMP-binding enzyme C-terminal domain LRO55_12195 PF02803 Thiolase, C-terminal domain LRO55_12195 PF00108 Thiolase, N-terminal domain LRO55_12200 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LRO55_12200 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LRO55_12200 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LRO55_12205 PF00378 Enoyl-CoA hydratase/isomerase LRO55_12210 PF00378 Enoyl-CoA hydratase/isomerase LRO55_12215 PF00111 2Fe-2S iron-sulfur cluster binding domain LRO55_12215 PF00175 Oxidoreductase NAD-binding domain LRO55_12215 PF00970 Oxidoreductase FAD-binding domain LRO55_12220 PF01883 Iron-sulfur cluster assembly protein LRO55_12225 PF05138 Phenylacetic acid catabolic protein LRO55_12230 PF06243 Phenylacetic acid degradation B LRO55_12235 PF05138 Phenylacetic acid catabolic protein LRO55_12240 PF00171 Aldehyde dehydrogenase family LRO55_12240 PF01575 MaoC like domain LRO55_12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_12250 PF03466 LysR substrate binding domain LRO55_12255 PF00488 MutS domain V LRO55_12255 PF05190 MutS family domain IV LRO55_12255 PF05192 MutS domain III LRO55_12255 PF05188 MutS domain II LRO55_12255 PF01624 MutS domain I LRO55_12265 PF11953 Domain of unknown function (DUF3470) LRO55_12265 PF00037 4Fe-4S binding domain LRO55_12280 PF01596 O-methyltransferase LRO55_12290 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_12295 PF01205 Uncharacterized protein family UPF0029 LRO55_12300 PF13533 Biotin-lipoyl like LRO55_12305 PF00664 ABC transporter transmembrane region LRO55_12305 PF00005 ABC transporter LRO55_12305 PF03412 Peptidase C39 family LRO55_12310 PF02321 Outer membrane efflux protein LRO55_12320 PF00005 ABC transporter LRO55_12320 PF12399 Branched-chain amino acid ATP-binding cassette transporter LRO55_12325 PF03968 OstA-like protein LRO55_12340 PF01380 SIS domain LRO55_12340 PF00571 CBS domain LRO55_12345 PF09190 DALR domain LRO55_12345 PF01406 tRNA synthetases class I (C) catalytic domain LRO55_12380 PF01638 HxlR-like helix-turn-helix LRO55_12385 PF07690 Major Facilitator Superfamily LRO55_12400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LRO55_12400 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_12415 PF00924 Mechanosensitive ion channel LRO55_12470 PF08241 Methyltransferase domain LRO55_12475 PF01037 Lrp/AsnC ligand binding domain LRO55_12485 PF03807 NADP oxidoreductase coenzyme F420-dependent LRO55_12485 PF14748 Pyrroline-5-carboxylate reductase dimerisation LRO55_12495 PF00313 'Cold-shock' DNA-binding domain LRO55_12500 PF03279 Bacterial lipid A biosynthesis acyltransferase LRO55_12505 PF01810 LysE type translocator LRO55_12540 PF02601 Exonuclease VII, large subunit LRO55_12540 PF13742 OB-fold nucleic acid binding domain LRO55_12575 PF00376 MerR family regulatory protein LRO55_12575 PF09278 MerR, DNA binding LRO55_12580 PF00403 Heavy-metal-associated domain LRO55_12590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_12590 PF03466 LysR substrate binding domain LRO55_12600 PF00355 Rieske [2Fe-2S] domain LRO55_12600 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LRO55_12610 PF00111 2Fe-2S iron-sulfur cluster binding domain LRO55_12610 PF00175 Oxidoreductase NAD-binding domain LRO55_12610 PF00970 Oxidoreductase FAD-binding domain LRO55_12615 PF00106 short chain dehydrogenase LRO55_12620 PF03594 Benzoate membrane transport protein LRO55_12625 PF07690 Major Facilitator Superfamily LRO55_12635 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LRO55_12635 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LRO55_12640 PF00270 DEAD/DEAH box helicase LRO55_12640 PF11898 Domain of unknown function (DUF3418) LRO55_12640 PF04408 Helicase associated domain (HA2) LRO55_12640 PF00271 Helicase conserved C-terminal domain LRO55_12640 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LRO55_12645 PF10417 C-terminal domain of 1-Cys peroxiredoxin LRO55_12645 PF00578 AhpC/TSA family LRO55_12655 PF00487 Fatty acid desaturase LRO55_12675 PF13192 Thioredoxin domain LRO55_12675 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_12685 PF00043 Glutathione S-transferase, C-terminal domain LRO55_12685 PF02798 Glutathione S-transferase, N-terminal domain LRO55_12695 PF02390 Putative methyltransferase LRO55_12705 PF13417 Glutathione S-transferase, N-terminal domain LRO55_12705 PF00043 Glutathione S-transferase, C-terminal domain LRO55_12715 PF00691 OmpA family LRO55_12715 PF13488 Glycine zipper LRO55_12720 PF01979 Amidohydrolase family LRO55_12725 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LRO55_12725 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LRO55_12735 PF10672 S-adenosylmethionine-dependent methyltransferase LRO55_12735 PF01170 Putative RNA methylase family UPF0020 LRO55_12735 PF02926 THUMP domain LRO55_12750 PF02861 Clp amino terminal domain, pathogenicity island component LRO55_12750 PF00004 ATPase family associated with various cellular activities (AAA) LRO55_12750 PF10431 C-terminal, D2-small domain, of ClpB protein LRO55_12750 PF17871 AAA lid domain LRO55_12750 PF07724 AAA domain (Cdc48 subfamily) LRO55_12765 PF02566 OsmC-like protein LRO55_12775 PF00027 Cyclic nucleotide-binding domain LRO55_12775 PF13545 Crp-like helix-turn-helix domain LRO55_12780 PF00248 Aldo/keto reductase family LRO55_12795 PF00709 Adenylosuccinate synthetase LRO55_12800 PF13393 Histidyl-tRNA synthetase LRO55_12810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LRO55_12810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LRO55_12815 PF01411 tRNA synthetases class II (A) LRO55_12815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LRO55_12815 PF02272 DHHA1 domain LRO55_12820 PF13840 ACT domain LRO55_12820 PF00696 Amino acid kinase family LRO55_12820 PF01842 ACT domain LRO55_12825 PF02599 Global regulator protein family LRO55_12830 PF01351 Ribonuclease HII LRO55_12840 PF01292 Prokaryotic cytochrome b561 LRO55_12845 PF00962 Adenosine/AMP deaminase LRO55_12850 PF00860 Permease family LRO55_12860 PF17954 Quercetinase C-terminal cupin domain LRO55_12860 PF02678 Pirin LRO55_12865 PF00440 Bacterial regulatory proteins, tetR family LRO55_12865 PF17932 Tetracyclin repressor-like, C-terminal domain LRO55_12875 PF00106 short chain dehydrogenase LRO55_12880 PF00743 Flavin-binding monooxygenase-like LRO55_12885 PF04072 Leucine carboxyl methyltransferase LRO55_12890 PF12833 Helix-turn-helix domain LRO55_12890 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_12895 PF00743 Flavin-binding monooxygenase-like LRO55_12900 PF00106 short chain dehydrogenase LRO55_12905 PF07859 alpha/beta hydrolase fold LRO55_12910 PF05199 GMC oxidoreductase LRO55_12915 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LRO55_12915 PF18381 YcaO cyclodehydratase C-terminal domain LRO55_12920 PF03573 outer membrane porin, OprD family LRO55_12925 PF07690 Major Facilitator Superfamily LRO55_12930 PF00884 Sulfatase LRO55_12935 PF03781 Sulfatase-modifying factor enzyme 1 LRO55_12945 PF00355 Rieske [2Fe-2S] domain LRO55_12950 PF00111 2Fe-2S iron-sulfur cluster binding domain LRO55_12950 PF00175 Oxidoreductase NAD-binding domain LRO55_12965 PF07690 Major Facilitator Superfamily LRO55_12970 PF00378 Enoyl-CoA hydratase/isomerase LRO55_12975 PF00171 Aldehyde dehydrogenase family LRO55_12985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_12985 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_12985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_12990 PF03573 outer membrane porin, OprD family LRO55_13005 PF07519 Tannase and feruloyl esterase LRO55_13010 PF00392 Bacterial regulatory proteins, gntR family LRO55_13010 PF07729 FCD domain LRO55_13015 PF00171 Aldehyde dehydrogenase family LRO55_13020 PF00701 Dihydrodipicolinate synthetase family LRO55_13025 PF13378 Enolase C-terminal domain-like LRO55_13030 PF07690 Major Facilitator Superfamily LRO55_13035 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LRO55_13035 PF08666 SAF domain LRO55_13040 PF00892 EamA-like transporter family LRO55_13045 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_13045 PF12833 Helix-turn-helix domain LRO55_13050 PF00171 Aldehyde dehydrogenase family LRO55_13055 PF06594 Haemolysin-type calcium binding protein related domain LRO55_13055 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LRO55_13090 PF00324 Amino acid permease LRO55_13095 PF04958 Arginine N-succinyltransferase beta subunit LRO55_13100 PF00202 Aminotransferase class-III LRO55_13110 PF00171 Aldehyde dehydrogenase family LRO55_13120 PF07729 FCD domain LRO55_13120 PF00392 Bacterial regulatory proteins, gntR family LRO55_13130 PF00324 Amino acid permease LRO55_13135 PF01266 FAD dependent oxidoreductase LRO55_13140 PF00324 Amino acid permease LRO55_13165 PF13296 Putative type VI secretion system Rhs element Vgr LRO55_13165 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LRO55_13165 PF04717 Type VI secretion system, phage-baseplate injector LRO55_13170 PF00440 Bacterial regulatory proteins, tetR family LRO55_13170 PF14278 Transcriptional regulator C-terminal region LRO55_13180 PF05987 Bacterial protein of unknown function (DUF898) LRO55_13195 PF01494 FAD binding domain LRO55_13240 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_13240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LRO55_13250 PF00764 Arginosuccinate synthase LRO55_13255 PF01590 GAF domain LRO55_13255 PF00990 Diguanylate cyclase, GGDEF domain LRO55_13255 PF00563 EAL domain LRO55_13255 PF00360 Phytochrome region LRO55_13260 PF01979 Amidohydrolase family LRO55_13265 PF00929 Exonuclease LRO55_13275 PF00593 TonB dependent receptor LRO55_13275 PF07715 TonB-dependent Receptor Plug Domain LRO55_13295 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_13295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LRO55_13300 PF00005 ABC transporter LRO55_13300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LRO55_13305 PF12911 N-terminal TM domain of oligopeptide transport permease C LRO55_13305 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_13310 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_13315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LRO55_13320 PF01464 Transglycosylase SLT domain LRO55_13320 PF01476 LysM domain LRO55_13320 PF01464 Transglycosylase SLT domain LRO55_13320 PF01476 LysM domain LRO55_13325 PF00929 Exonuclease LRO55_13335 PF00293 NUDIX domain LRO55_13335 PF09297 NADH pyrophosphatase zinc ribbon domain LRO55_13345 PF04972 BON domain LRO55_13350 PF02021 Uncharacterised protein family UPF0102 LRO55_13355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LRO55_13365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_13365 PF03466 LysR substrate binding domain LRO55_13370 PF01810 LysE type translocator LRO55_13380 PF13411 MerR HTH family regulatory protein LRO55_13390 PF01494 FAD binding domain LRO55_13395 PF01494 FAD binding domain LRO55_13400 PF05195 Aminopeptidase P, N-terminal domain LRO55_13400 PF00557 Metallopeptidase family M24 LRO55_13440 PF01812 5-formyltetrahydrofolate cyclo-ligase family LRO55_13445 PF05362 Lon protease (S16) C-terminal proteolytic domain LRO55_13445 PF00004 ATPase family associated with various cellular activities (AAA) LRO55_13445 PF02190 ATP-dependent protease La (LON) substrate-binding domain LRO55_13450 PF02590 Predicted SPOUT methyltransferase LRO55_13455 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LRO55_13465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LRO55_13465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LRO55_13470 PF04060 Putative Fe-S cluster LRO55_13475 PF10576 Iron-sulfur binding domain of endonuclease III LRO55_13475 PF00633 Helix-hairpin-helix motif LRO55_13475 PF00730 HhH-GPD superfamily base excision DNA repair protein LRO55_13485 PF05191 Adenylate kinase, active site lid LRO55_13500 PF03717 Penicillin-binding Protein dimerisation domain LRO55_13500 PF00905 Penicillin binding protein transpeptidase domain LRO55_13515 PF02492 CobW/HypB/UreG, nucleotide-binding domain LRO55_13520 PF01730 UreF LRO55_13525 PF02814 UreE urease accessory protein, N-terminal domain LRO55_13525 PF05194 UreE urease accessory protein, C-terminal domain LRO55_13530 PF00449 Urease alpha-subunit, N-terminal domain LRO55_13530 PF01979 Amidohydrolase family LRO55_13535 PF00699 Urease beta subunit LRO55_13540 PF00547 Urease, gamma subunit LRO55_13545 PF01774 UreD urease accessory protein LRO55_13555 PF17185 NlpE C-terminal OB domain LRO55_13555 PF04170 NlpE N-terminal domain LRO55_13560 PF00463 Isocitrate lyase family LRO55_13565 PF03466 LysR substrate binding domain LRO55_13565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_13570 PF00571 CBS domain LRO55_13570 PF03471 Transporter associated domain LRO55_13570 PF01595 Cyclin M transmembrane N-terminal domain LRO55_13575 PF03600 Citrate transporter LRO55_13590 PF00009 Elongation factor Tu GTP binding domain LRO55_13595 PF01507 Phosphoadenosine phosphosulfate reductase family LRO55_13605 PF14052 Capsule assembly protein Wzi LRO55_13610 PF01336 OB-fold nucleic acid binding domain LRO55_13610 PF00152 tRNA synthetases class II (D, K and N) LRO55_13625 PF00301 Rubredoxin LRO55_13630 PF18113 Rubredoxin binding C-terminal domain LRO55_13630 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_13635 PF00561 alpha/beta hydrolase fold LRO55_13640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_13640 PF03466 LysR substrate binding domain LRO55_13655 PF02503 Polyphosphate kinase middle domain LRO55_13655 PF13090 Polyphosphate kinase C-terminal domain 2 LRO55_13655 PF13089 Polyphosphate kinase N-terminal domain LRO55_13655 PF17941 Polyphosphate kinase C-terminal domain 1 LRO55_13660 PF00912 Transglycosylase LRO55_13665 PF01694 Rhomboid family LRO55_13675 PF00005 ABC transporter LRO55_13680 PF13472 GDSL-like Lipase/Acylhydrolase family LRO55_13685 PF00484 Carbonic anhydrase LRO55_13690 PF00561 alpha/beta hydrolase fold LRO55_13700 PF00593 TonB dependent receptor LRO55_13700 PF07715 TonB-dependent Receptor Plug Domain LRO55_13705 PF01521 Iron-sulphur cluster biosynthesis LRO55_13705 PF01106 NifU-like domain LRO55_13715 PF00884 Sulfatase LRO55_13720 PF03781 Sulfatase-modifying factor enzyme 1 LRO55_13735 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_13740 PF01384 Phosphate transporter family LRO55_13745 PF02310 B12 binding domain LRO55_13745 PF02607 B12 binding domain LRO55_13745 PF02965 Vitamin B12 dependent methionine synthase, activation domain LRO55_13745 PF00809 Pterin binding enzyme LRO55_13745 PF02574 Homocysteine S-methyltransferase LRO55_13760 PF02780 Transketolase, C-terminal domain LRO55_13760 PF02779 Transketolase, pyrimidine binding domain LRO55_13765 PF00456 Transketolase, thiamine diphosphate binding domain LRO55_13770 PF07690 Major Facilitator Superfamily LRO55_13780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_13780 PF03466 LysR substrate binding domain LRO55_13790 PF01263 Aldose 1-epimerase LRO55_13795 PF07690 Major Facilitator Superfamily LRO55_13805 PF04960 Glutaminase LRO55_13810 PF01327 Polypeptide deformylase LRO55_13815 PF07690 Major Facilitator Superfamily LRO55_13825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LRO55_13825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LRO55_13825 PF00205 Thiamine pyrophosphate enzyme, central domain LRO55_13830 PF00171 Aldehyde dehydrogenase family LRO55_13835 PF01958 Domain of unknown function DUF108 LRO55_13835 PF03447 Homoserine dehydrogenase, NAD binding domain LRO55_13845 PF12697 Alpha/beta hydrolase family LRO55_13855 PF07690 Major Facilitator Superfamily LRO55_13860 PF14759 Reductase C-terminal LRO55_13860 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_13865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LRO55_13875 PF00355 Rieske [2Fe-2S] domain LRO55_13885 PF00355 Rieske [2Fe-2S] domain LRO55_13890 PF01614 Bacterial transcriptional regulator LRO55_13890 PF09339 IclR helix-turn-helix domain LRO55_13910 PF00378 Enoyl-CoA hydratase/isomerase LRO55_13920 PF00440 Bacterial regulatory proteins, tetR family LRO55_13930 PF00535 Glycosyl transferase family 2 LRO55_13935 PF14883 Hypothetical glycosyl hydrolase family 13 LRO55_13935 PF01522 Polysaccharide deacetylase LRO55_13940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LRO55_13945 PF07152 YaeQ protein LRO55_13950 PF00375 Sodium:dicarboxylate symporter family LRO55_13955 PF02492 CobW/HypB/UreG, nucleotide-binding domain LRO55_13955 PF07683 Cobalamin synthesis protein cobW C-terminal domain LRO55_13965 PF03061 Thioesterase superfamily LRO55_13975 PF02028 BCCT, betaine/carnitine/choline family transporter LRO55_13980 PF02028 BCCT, betaine/carnitine/choline family transporter LRO55_13985 PF13977 BetI-type transcriptional repressor, C-terminal LRO55_13985 PF00440 Bacterial regulatory proteins, tetR family LRO55_13990 PF00171 Aldehyde dehydrogenase family LRO55_13995 PF00732 GMC oxidoreductase LRO55_13995 PF05199 GMC oxidoreductase LRO55_14000 PF06039 Malate:quinone oxidoreductase (Mqo) LRO55_14010 PF02574 Homocysteine S-methyltransferase LRO55_14015 PF13520 Amino acid permease LRO55_14035 PF00873 AcrB/AcrD/AcrF family LRO55_14040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LRO55_14045 PF02321 Outer membrane efflux protein LRO55_14060 PF00701 Dihydrodipicolinate synthetase family LRO55_14065 PF00083 Sugar (and other) transporter LRO55_14095 PF18019 HD domain LRO55_14115 PF09615 CRISPR-associated protein (Cas_Csy3) LRO55_14125 PF01867 CRISPR associated protein Cas1 LRO55_14140 PF07690 Major Facilitator Superfamily LRO55_14145 PF00529 HlyD membrane-fusion protein of T1SS LRO55_14145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LRO55_14150 PF03061 Thioesterase superfamily LRO55_14155 PF00490 Delta-aminolevulinic acid dehydratase LRO55_14160 PF01266 FAD dependent oxidoreductase LRO55_14165 PF08338 Domain of unknown function (DUF1731) LRO55_14165 PF01370 NAD dependent epimerase/dehydratase family LRO55_14185 PF12320 Type 5 capsule protein repressor C-terminal domain LRO55_14185 PF00149 Calcineurin-like phosphoesterase LRO55_14195 PF01168 Alanine racemase, N-terminal domain LRO55_14200 PF00437 Type II/IV secretion system protein LRO55_14205 PF00437 Type II/IV secretion system protein LRO55_14210 PF01475 Ferric uptake regulator family LRO55_14215 PF04355 SmpA / OmlA family LRO55_14220 PF03658 RnfH family Ubiquitin LRO55_14230 PF01814 Hemerythrin HHE cation binding domain LRO55_14235 PF13230 Glutamine amidotransferases class-II LRO55_14245 PF00696 Amino acid kinase family LRO55_14250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LRO55_14250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LRO55_14250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LRO55_14250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LRO55_14255 PF00692 dUTPase LRO55_14260 PF00580 UvrD/REP helicase N-terminal domain LRO55_14260 PF13361 UvrD-like helicase C-terminal domain LRO55_14265 PF13488 Glycine zipper LRO55_14265 PF00691 OmpA family LRO55_14270 PF01553 Acyltransferase LRO55_14280 PF03775 Septum formation inhibitor MinC, C-terminal domain LRO55_14285 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LRO55_14290 PF03776 Septum formation topological specificity factor MinE LRO55_14305 PF01810 LysE type translocator LRO55_14310 PF17854 FtsK alpha domain LRO55_14310 PF09397 Ftsk gamma domain LRO55_14310 PF01580 FtsK/SpoIIIE family LRO55_14310 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LRO55_14315 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_14325 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LRO55_14330 PF04377 Arginine-tRNA-protein transferase, C terminus LRO55_14330 PF04376 Arginine-tRNA-protein transferase, N terminus LRO55_14335 PF00583 Acetyltransferase (GNAT) family LRO55_14350 PF03144 Elongation factor Tu domain 2 LRO55_14350 PF03143 Elongation factor Tu C-terminal domain LRO55_14350 PF00009 Elongation factor Tu GTP binding domain LRO55_14355 PF00679 Elongation factor G C-terminus LRO55_14355 PF14492 Elongation Factor G, domain II LRO55_14355 PF03764 Elongation factor G, domain IV LRO55_14355 PF00009 Elongation factor Tu GTP binding domain LRO55_14355 PF03144 Elongation factor Tu domain 2 LRO55_14360 PF00177 Ribosomal protein S7p/S5e LRO55_14365 PF00164 Ribosomal protein S12/S23 LRO55_14375 PF02801 Beta-ketoacyl synthase, C-terminal domain LRO55_14375 PF00109 Beta-ketoacyl synthase, N-terminal domain LRO55_14380 PF03653 Uncharacterised protein family (UPF0093) LRO55_14390 PF02540 NAD synthase LRO55_14390 PF00795 Carbon-nitrogen hydrolase LRO55_14420 PF00037 4Fe-4S binding domain LRO55_14425 PF01467 Cytidylyltransferase-like LRO55_14430 PF01668 SmpB protein LRO55_14440 PF03358 NADPH-dependent FMN reductase LRO55_14445 PF02578 Multi-copper polyphenol oxidoreductase laccase LRO55_14450 PF00849 RNA pseudouridylate synthase LRO55_14450 PF01479 S4 domain LRO55_14455 PF13525 Outer membrane lipoprotein LRO55_14460 PF01807 CHC2 zinc finger LRO55_14460 PF08275 DNA primase catalytic core, N-terminal domain LRO55_14460 PF08278 DNA primase DnaG DnaB-binding LRO55_14460 PF10410 DnaB-helicase binding domain of primase LRO55_14465 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LRO55_14465 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LRO55_14465 PF01488 Shikimate / quinate 5-dehydrogenase LRO55_14475 PF03550 Outer membrane lipoprotein LolB LRO55_14480 PF08544 GHMP kinases C terminal LRO55_14480 PF00288 GHMP kinases N terminal domain LRO55_14505 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LRO55_14505 PF14572 Phosphoribosyl synthetase-associated domain LRO55_14510 PF01386 Ribosomal L25p family LRO55_14515 PF01195 Peptidyl-tRNA hydrolase LRO55_14520 PF02261 Aspartate decarboxylase LRO55_14535 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LRO55_14540 PF13419 Haloacid dehalogenase-like hydrolase LRO55_14545 PF02581 Thiamine monophosphate synthase LRO55_14545 PF03070 TENA/THI-4/PQQC family LRO55_14545 PF08543 Phosphomethylpyrimidine kinase LRO55_14550 PF04972 BON domain LRO55_14550 PF01476 LysM domain LRO55_14555 PF00550 Phosphopantetheine attachment site LRO55_14565 PF00698 Acyl transferase domain LRO55_14570 PF01783 Ribosomal L32p protein family LRO55_14575 PF02620 Large ribosomal RNA subunit accumulation protein YceD LRO55_14580 PF04315 Elongation factor P hydroxylase LRO55_14585 PF01300 Telomere recombination LRO55_14590 PF02616 Segregation and condensation protein ScpA LRO55_14595 PF04079 Segregation and condensation complex subunit ScpB LRO55_14600 PF01479 S4 domain LRO55_14600 PF00849 RNA pseudouridylate synthase LRO55_14615 PF00155 Aminotransferase class I and II LRO55_14620 PF04055 Radical SAM superfamily LRO55_14620 PF06968 Biotin and Thiamin Synthesis associated domain LRO55_14620 PF00202 Aminotransferase class-III LRO55_14625 PF12697 Alpha/beta hydrolase family LRO55_14625 PF08241 Methyltransferase domain LRO55_14630 PF02358 Trehalose-phosphatase LRO55_14635 PF00982 Glycosyltransferase family 20 LRO55_14640 PF07690 Major Facilitator Superfamily LRO55_14645 PF00210 Ferritin-like domain LRO55_14650 PF12826 Helix-hairpin-helix motif LRO55_14650 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LRO55_14650 PF03120 NAD-dependent DNA ligase OB-fold domain LRO55_14650 PF01653 NAD-dependent DNA ligase adenylation domain LRO55_14650 PF00533 BRCA1 C Terminus (BRCT) domain LRO55_14660 PF06470 SMC proteins Flexible Hinge Domain LRO55_14660 PF02463 RecF/RecN/SMC N terminal domain LRO55_14670 PF01925 Sulfite exporter TauE/SafE LRO55_14680 PF03309 Type III pantothenate kinase LRO55_14685 PF02978 Signal peptide binding domain LRO55_14685 PF00448 SRP54-type protein, GTPase domain LRO55_14685 PF02881 SRP54-type protein, helical bundle domain LRO55_14695 PF01207 Dihydrouridine synthase (Dus) LRO55_14725 PF00692 dUTPase LRO55_14740 PF01048 Phosphorylase superfamily LRO55_14745 PF10609 NUBPL iron-transfer P-loop NTPase LRO55_14760 PF09334 tRNA synthetases class I (M) LRO55_14760 PF01588 Putative tRNA binding domain LRO55_14790 PF13533 Biotin-lipoyl like LRO55_14795 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_14810 PF05552 Conserved TM helix LRO55_14825 PF00970 Oxidoreductase FAD-binding domain LRO55_14825 PF00175 Oxidoreductase NAD-binding domain LRO55_14830 PF03466 LysR substrate binding domain LRO55_14830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_14850 PF00361 Proton-conducting membrane transporter LRO55_14855 PF00361 Proton-conducting membrane transporter LRO55_14860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LRO55_14860 PF00361 Proton-conducting membrane transporter LRO55_14865 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LRO55_14870 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LRO55_14875 PF12838 4Fe-4S dicluster domain LRO55_14880 PF00146 NADH dehydrogenase LRO55_14885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LRO55_14885 PF00384 Molybdopterin oxidoreductase LRO55_14885 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LRO55_14890 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LRO55_14890 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LRO55_14890 PF10531 SLBB domain LRO55_14900 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LRO55_14900 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LRO55_14905 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LRO55_14910 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LRO55_14915 PF00990 Diguanylate cyclase, GGDEF domain LRO55_14925 PF00672 HAMP domain LRO55_14925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_14925 PF00512 His Kinase A (phospho-acceptor) domain LRO55_14930 PF00072 Response regulator receiver domain LRO55_14930 PF00486 Transcriptional regulatory protein, C terminal LRO55_14940 PF00317 Ribonucleotide reductase, all-alpha domain LRO55_14940 PF02867 Ribonucleotide reductase, barrel domain LRO55_14940 PF03477 ATP cone domain LRO55_14950 PF00268 Ribonucleotide reductase, small chain LRO55_14955 PF01062 Bestrophin, RFP-TM, chloride channel LRO55_14960 PF02634 FdhD/NarQ family LRO55_14965 PF00384 Molybdopterin oxidoreductase LRO55_14970 PF02391 MoaE protein LRO55_14980 PF12804 MobA-like NTP transferase domain LRO55_14985 PF03454 MoeA C-terminal region (domain IV) LRO55_14985 PF03453 MoeA N-terminal region (domain I and II) LRO55_14985 PF00994 Probable molybdopterin binding domain LRO55_14990 PF00994 Probable molybdopterin binding domain LRO55_14990 PF01967 MoaC family LRO55_14995 PF04055 Radical SAM superfamily LRO55_14995 PF06463 Molybdenum Cofactor Synthesis C LRO55_15005 PF02322 Cytochrome bd terminal oxidase subunit II LRO55_15010 PF01654 Cytochrome bd terminal oxidase subunit I LRO55_15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_15020 PF03466 LysR substrate binding domain LRO55_15025 PF01042 Endoribonuclease L-PSP LRO55_15040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_15040 PF03466 LysR substrate binding domain LRO55_15045 PF08892 YqcI/YcgG family LRO55_15065 PF00440 Bacterial regulatory proteins, tetR family LRO55_15085 PF13419 Haloacid dehalogenase-like hydrolase LRO55_15090 PF12897 Alanine-glyoxylate amino-transferase LRO55_15095 PF00440 Bacterial regulatory proteins, tetR family LRO55_15100 PF01613 Flavin reductase like domain LRO55_15105 PF08267 Cobalamin-independent synthase, N-terminal domain LRO55_15105 PF01717 Cobalamin-independent synthase, Catalytic domain LRO55_15115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_15115 PF03466 LysR substrate binding domain LRO55_15120 PF01810 LysE type translocator LRO55_15130 PF12833 Helix-turn-helix domain LRO55_15130 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LRO55_15135 PF07687 Peptidase dimerisation domain LRO55_15135 PF01546 Peptidase family M20/M25/M40 LRO55_15145 PF03466 LysR substrate binding domain LRO55_15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_15150 PF07690 Major Facilitator Superfamily LRO55_15160 PF03466 LysR substrate binding domain LRO55_15160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_15165 PF14537 Cytochrome c3 LRO55_15165 PF00890 FAD binding domain LRO55_15180 PF17932 Tetracyclin repressor-like, C-terminal domain LRO55_15180 PF00440 Bacterial regulatory proteins, tetR family LRO55_15190 PF02515 CoA-transferase family III LRO55_15195 PF07690 Major Facilitator Superfamily LRO55_15200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_15200 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_15200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_15205 PF03466 LysR substrate binding domain LRO55_15210 PF00107 Zinc-binding dehydrogenase LRO55_15210 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_15215 PF00962 Adenosine/AMP deaminase LRO55_15240 PF02445 Quinolinate synthetase A protein LRO55_15245 PF01960 ArgJ family LRO55_15250 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LRO55_15250 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LRO55_15255 PF00893 Small Multidrug Resistance protein LRO55_15265 PF05275 Copper resistance protein B precursor (CopB) LRO55_15270 PF07732 Multicopper oxidase LRO55_15270 PF07731 Multicopper oxidase LRO55_15270 PF00394 Multicopper oxidase LRO55_15285 PF00834 Ribulose-phosphate 3 epimerase family LRO55_15295 PF00756 Putative esterase LRO55_15305 PF04445 Putative SAM-dependent methyltransferase LRO55_15310 PF00814 Glycoprotease family LRO55_15315 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_15320 PF00293 NUDIX domain LRO55_15355 PF01476 LysM domain LRO55_15355 PF00005 ABC transporter LRO55_15360 PF04715 Anthranilate synthase component I, N terminal region LRO55_15360 PF00425 chorismate binding enzyme LRO55_15365 PF00155 Aminotransferase class I and II LRO55_15370 PF00815 Histidinol dehydrogenase LRO55_15375 PF01634 ATP phosphoribosyltransferase LRO55_15380 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LRO55_15385 PF01722 BolA-like protein LRO55_15390 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LRO55_15395 PF00309 Sigma-54 factor, Activator interacting domain (AID) LRO55_15395 PF04963 Sigma-54 factor, core binding domain LRO55_15395 PF04552 Sigma-54, DNA binding domain LRO55_15440 PF00795 Carbon-nitrogen hydrolase LRO55_15450 PF01047 MarR family LRO55_15455 PF02566 OsmC-like protein LRO55_15460 PF00437 Type II/IV secretion system protein LRO55_15480 PF01367 5'-3' exonuclease, C-terminal SAM fold LRO55_15480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LRO55_15480 PF00476 DNA polymerase family A LRO55_15480 PF01612 3'-5' exonuclease LRO55_15485 PF02325 YGGT family LRO55_15490 PF03807 NADP oxidoreductase coenzyme F420-dependent LRO55_15490 PF14748 Pyrroline-5-carboxylate reductase dimerisation LRO55_15495 PF01171 PP-loop family LRO55_15495 PF11734 TilS substrate C-terminal domain LRO55_15495 PF09179 TilS substrate binding domain LRO55_15500 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LRO55_15505 PF02541 Ppx/GppA phosphatase family LRO55_15510 PF00085 Thioredoxin LRO55_15515 PF07497 Rho termination factor, RNA-binding domain LRO55_15515 PF07498 Rho termination factor, N-terminal domain LRO55_15515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LRO55_15530 PF00216 Bacterial DNA-binding protein LRO55_15535 PF03483 B3/4 domain LRO55_15535 PF03484 tRNA synthetase B5 domain LRO55_15535 PF03147 Ferredoxin-fold anticodon binding domain LRO55_15535 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LRO55_15535 PF01588 Putative tRNA binding domain LRO55_15540 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LRO55_15540 PF01409 tRNA synthetases class II core domain (F) LRO55_15560 PF00453 Ribosomal protein L20 LRO55_15565 PF01632 Ribosomal protein L35 LRO55_15570 PF07690 Major Facilitator Superfamily LRO55_15575 PF09335 SNARE associated Golgi protein LRO55_15580 PF02798 Glutathione S-transferase, N-terminal domain LRO55_15580 PF00043 Glutathione S-transferase, C-terminal domain LRO55_15585 PF05198 Translation initiation factor IF-3, N-terminal domain LRO55_15585 PF00707 Translation initiation factor IF-3, C-terminal domain LRO55_15590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LRO55_15590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LRO55_15590 PF03129 Anticodon binding domain LRO55_15590 PF02824 TGS domain LRO55_15595 PF13193 AMP-binding enzyme C-terminal domain LRO55_15595 PF00501 AMP-binding enzyme LRO55_15600 PF04751 Protein of unknown function (DUF615) LRO55_15605 PF00381 PTS HPr component phosphorylation site LRO55_15610 PF03668 P-loop ATPase protein family LRO55_15615 PF02569 Pantoate-beta-alanine ligase LRO55_15620 PF02548 Ketopantoate hydroxymethyltransferase LRO55_15625 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LRO55_15630 PF01743 Poly A polymerase head domain LRO55_15630 PF12626 Polymerase A arginine-rich C-terminus LRO55_15630 PF12627 Probable RNA and SrmB- binding site of polymerase A LRO55_15640 PF03819 MazG nucleotide pyrophosphohydrolase domain LRO55_15650 PF13291 ACT domain LRO55_15650 PF04607 Region found in RelA / SpoT proteins LRO55_15650 PF02824 TGS domain LRO55_15655 PF05958 tRNA (Uracil-5-)-methyltransferase LRO55_15665 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_15670 PF00672 HAMP domain LRO55_15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_15670 PF00512 His Kinase A (phospho-acceptor) domain LRO55_15670 PF01627 Hpt domain LRO55_15670 PF00072 Response regulator receiver domain LRO55_15670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LRO55_15675 PF00378 Enoyl-CoA hydratase/isomerase LRO55_15680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LRO55_15680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LRO55_15685 PF01261 Xylose isomerase-like TIM barrel LRO55_15695 PF00106 short chain dehydrogenase LRO55_15700 PF02233 NAD(P) transhydrogenase beta subunit LRO55_15705 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LRO55_15710 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LRO55_15710 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LRO55_15715 PF00892 EamA-like transporter family LRO55_15725 PF07690 Major Facilitator Superfamily LRO55_15730 PF01207 Dihydrouridine synthase (Dus) LRO55_15745 PF03466 LysR substrate binding domain LRO55_15745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_15755 PF00899 ThiF family LRO55_15760 PF00330 Aconitase family (aconitate hydratase) LRO55_15760 PF00694 Aconitase C-terminal domain LRO55_15765 PF01026 TatD related DNase LRO55_15780 PF16658 Class II release factor RF3, C-terminal domain LRO55_15780 PF00009 Elongation factor Tu GTP binding domain LRO55_15780 PF03144 Elongation factor Tu domain 2 LRO55_15800 PF00990 Diguanylate cyclase, GGDEF domain LRO55_15800 PF03707 Bacterial signalling protein N terminal repeat LRO55_15800 PF00563 EAL domain LRO55_15805 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LRO55_15805 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LRO55_15810 PF10369 Small subunit of acetolactate synthase LRO55_15815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LRO55_15815 PF00205 Thiamine pyrophosphate enzyme, central domain LRO55_15815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LRO55_15820 PF00133 tRNA synthetases class I (I, L, M and V) LRO55_15820 PF13603 Leucyl-tRNA synthetase, Domain 2 LRO55_15820 PF08264 Anticodon-binding domain of tRNA LRO55_15820 PF09334 tRNA synthetases class I (M) LRO55_15835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LRO55_15840 PF02687 FtsX-like permease family LRO55_15840 PF12704 MacB-like periplasmic core domain LRO55_15840 PF00005 ABC transporter LRO55_15845 PF02321 Outer membrane efflux protein LRO55_15870 PF00929 Exonuclease LRO55_15875 PF03193 RsgA GTPase LRO55_15885 PF00462 Glutaredoxin LRO55_15890 PF02556 Preprotein translocase subunit SecB LRO55_15905 PF00109 Beta-ketoacyl synthase, N-terminal domain LRO55_15905 PF02801 Beta-ketoacyl synthase, C-terminal domain LRO55_15920 PF02801 Beta-ketoacyl synthase, C-terminal domain LRO55_15920 PF00109 Beta-ketoacyl synthase, N-terminal domain LRO55_15930 PF04820 Tryptophan halogenase LRO55_15950 PF00221 Aromatic amino acid lyase LRO55_15965 PF13193 AMP-binding enzyme C-terminal domain LRO55_15965 PF00501 AMP-binding enzyme LRO55_15975 PF00550 Phosphopantetheine attachment site LRO55_15980 PF00550 Phosphopantetheine attachment site LRO55_15995 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LRO55_15995 PF01926 50S ribosome-binding GTPase LRO55_16000 PF01011 PQQ enzyme repeat LRO55_16000 PF13360 PQQ-like domain LRO55_16010 PF13393 Histidyl-tRNA synthetase LRO55_16010 PF03129 Anticodon binding domain LRO55_16015 PF04551 GcpE protein LRO55_16020 PF13464 Domain of unknown function (DUF4115) LRO55_16030 PF04055 Radical SAM superfamily LRO55_16035 PF00334 Nucleoside diphosphate kinase LRO55_16040 PF04384 Iron-sulphur cluster assembly LRO55_16045 PF01569 PAP2 superfamily LRO55_16050 PF13439 Glycosyltransferase Family 4 LRO55_16050 PF00534 Glycosyl transferases group 1 LRO55_16055 PF03572 Peptidase family S41 LRO55_16055 PF17804 Tail specific protease N-terminal domain LRO55_16055 PF11818 C-terminal domain of tail specific protease (DUF3340) LRO55_16055 PF00595 PDZ domain LRO55_16060 PF00933 Glycosyl hydrolase family 3 N terminal domain LRO55_16070 PF00561 alpha/beta hydrolase fold LRO55_16075 PF00171 Aldehyde dehydrogenase family LRO55_16080 PF00171 Aldehyde dehydrogenase family LRO55_16085 PF01202 Shikimate kinase LRO55_16090 PF02447 GntP family permease LRO55_16095 PF01081 KDPG and KHG aldolase LRO55_16100 PF00920 Dehydratase family LRO55_16110 PF00871 Acetokinase family LRO55_16115 PF01515 Phosphate acetyl/butaryl transferase LRO55_16115 PF07085 DRTGG domain LRO55_16120 PF05681 Fumarate hydratase (Fumerase) LRO55_16120 PF05683 Fumarase C-terminus LRO55_16135 PF06689 ClpX C4-type zinc finger LRO55_16135 PF07724 AAA domain (Cdc48 subfamily) LRO55_16135 PF10431 C-terminal, D2-small domain, of ClpB protein LRO55_16140 PF00574 Clp protease LRO55_16145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LRO55_16145 PF05698 Bacterial trigger factor protein (TF) C-terminus LRO55_16145 PF05697 Bacterial trigger factor protein (TF) LRO55_16150 PF07715 TonB-dependent Receptor Plug Domain LRO55_16150 PF00593 TonB dependent receptor LRO55_16155 PF13640 2OG-Fe(II) oxygenase superfamily LRO55_16155 PF18331 PKHD-type hydroxylase C-terminal domain LRO55_16160 PF00682 HMGL-like LRO55_16160 PF08502 LeuA allosteric (dimerisation) domain LRO55_16165 PF00561 alpha/beta hydrolase fold LRO55_16170 PF00561 alpha/beta hydrolase fold LRO55_16170 PF07021 Methionine biosynthesis protein MetW LRO55_16180 PF01725 Ham1 family LRO55_16190 PF02416 mttA/Hcf106 family LRO55_16195 PF02416 mttA/Hcf106 family LRO55_16200 PF00902 Sec-independent protein translocase protein (TatC) LRO55_16220 PF01790 Prolipoprotein diacylglyceryl transferase LRO55_16235 PF00303 Thymidylate synthase LRO55_16240 PF00186 Dihydrofolate reductase LRO55_16250 PF01625 Peptide methionine sulfoxide reductase LRO55_16255 PF02472 Biopolymer transport protein ExbD/TolR LRO55_16260 PF01618 MotA/TolQ/ExbB proton channel family LRO55_16270 PF01842 ACT domain LRO55_16270 PF00551 Formyl transferase LRO55_16280 PF00171 Aldehyde dehydrogenase family LRO55_16285 PF00830 Ribosomal L28 family LRO55_16290 PF00471 Ribosomal protein L33 LRO55_16295 PF02254 TrkA-N domain LRO55_16295 PF00999 Sodium/hydrogen exchanger family LRO55_16315 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LRO55_16320 PF00580 UvrD/REP helicase N-terminal domain LRO55_16320 PF13361 UvrD-like helicase C-terminal domain LRO55_16335 PF01131 DNA topoisomerase LRO55_16335 PF01751 Toprim domain LRO55_16335 PF01396 Topoisomerase DNA binding C4 zinc finger LRO55_16335 PF08272 Topoisomerase I zinc-ribbon-like LRO55_16345 PF01638 HxlR-like helix-turn-helix LRO55_16350 PF08240 Alcohol dehydrogenase GroES-like domain LRO55_16350 PF00107 Zinc-binding dehydrogenase LRO55_16355 PF04102 SlyX LRO55_16360 PF00005 ABC transporter LRO55_16360 PF12848 ABC transporter LRO55_16360 PF16326 ABC transporter C-terminal domain LRO55_16370 PF03279 Bacterial lipid A biosynthesis acyltransferase LRO55_16380 PF00375 Sodium:dicarboxylate symporter family LRO55_16390 PF01118 Semialdehyde dehydrogenase, NAD binding domain LRO55_16390 PF02774 Semialdehyde dehydrogenase, dimerisation domain LRO55_16410 PF01416 tRNA pseudouridine synthase LRO55_16420 PF01176 Translation initiation factor 1A / IF-1 LRO55_16435 PF00180 Isocitrate/isopropylmalate dehydrogenase LRO55_16445 PF00694 Aconitase C-terminal domain LRO55_16450 PF00330 Aconitase family (aconitate hydratase) LRO55_16460 PF03466 LysR substrate binding domain LRO55_16460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_16485 PF00293 NUDIX domain LRO55_16490 PF02896 PEP-utilising enzyme, TIM barrel domain LRO55_16490 PF01590 GAF domain LRO55_16490 PF05524 PEP-utilising enzyme, N-terminal LRO55_16490 PF00391 PEP-utilising enzyme, mobile domain LRO55_16495 PF00141 Peroxidase LRO55_16500 PF12706 Beta-lactamase superfamily domain LRO55_16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_16505 PF03466 LysR substrate binding domain LRO55_16515 PF02798 Glutathione S-transferase, N-terminal domain LRO55_16520 PF08279 HTH domain LRO55_16520 PF13280 WYL domain LRO55_16530 PF00849 RNA pseudouridylate synthase LRO55_16530 PF01479 S4 domain LRO55_16535 PF00575 S1 RNA binding domain LRO55_16535 PF10150 Ribonuclease E/G family LRO55_16535 PF12111 Polyribonucleotide phosphorylase C terminal LRO55_16540 PF00501 AMP-binding enzyme LRO55_16540 PF13193 AMP-binding enzyme C-terminal domain LRO55_16555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_16555 PF03466 LysR substrate binding domain LRO55_16565 PF06969 HemN C-terminal domain LRO55_16565 PF04055 Radical SAM superfamily LRO55_16575 PF01554 MatE LRO55_16580 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LRO55_16580 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_16580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_16585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_16585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LRO55_16590 PF03109 ABC1 family LRO55_16595 PF01197 Ribosomal protein L31 LRO55_16605 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LRO55_16615 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LRO55_16615 PF07992 Pyridine nucleotide-disulphide oxidoreductase LRO55_16625 PF03884 DNA gyrase inhibitor YacG LRO55_16630 PF00753 Metallo-beta-lactamase superfamily LRO55_16635 PF00762 Ferrochelatase LRO55_16645 PF01177 Asp/Glu/Hydantoin racemase LRO55_16665 PF01206 Sulfurtransferase TusA LRO55_16670 PF03471 Transporter associated domain LRO55_16670 PF00571 CBS domain LRO55_16675 PF00795 Carbon-nitrogen hydrolase LRO55_16680 PF01588 Putative tRNA binding domain LRO55_16695 PF07963 Prokaryotic N-terminal methylation motif LRO55_16695 PF08334 Type II secretion system (T2SS), protein G LRO55_16700 PF00482 Type II secretion system (T2SS), protein F LRO55_16705 PF00270 DEAD/DEAH box helicase LRO55_16705 PF00271 Helicase conserved C-terminal domain LRO55_16705 PF17764 3′ DNA-binding domain (3′BD) LRO55_16705 PF18074 Primosomal protein N C-terminal domain LRO55_16705 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LRO55_16710 PF02254 TrkA-N domain LRO55_16710 PF00999 Sodium/hydrogen exchanger family LRO55_16715 PF01430 Hsp33 protein LRO55_16725 PF00226 DnaJ domain LRO55_16725 PF01556 DnaJ C terminal domain LRO55_16735 PF01544 CorA-like Mg2+ transporter protein LRO55_16740 PF00013 KH domain LRO55_16740 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LRO55_16740 PF03725 3' exoribonuclease family, domain 2 LRO55_16740 PF01138 3' exoribonuclease family, domain 1 LRO55_16740 PF00575 S1 RNA binding domain LRO55_16745 PF00312 Ribosomal protein S15 LRO55_16750 PF00144 Beta-lactamase LRO55_16755 PF13538 UvrD-like helicase C-terminal domain LRO55_16760 PF12705 PD-(D/E)XK nuclease superfamily LRO55_16760 PF00580 UvrD/REP helicase N-terminal domain LRO55_16760 PF13361 UvrD-like helicase C-terminal domain LRO55_16765 PF17946 RecC C-terminal domain LRO55_16775 PF03976 Polyphosphate kinase 2 (PPK2) LRO55_16785 PF01209 ubiE/COQ5 methyltransferase family LRO55_16795 PF03109 ABC1 family LRO55_16800 PF01494 FAD binding domain LRO55_16805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LRO55_16810 PF01502 Phosphoribosyl-AMP cyclohydrolase LRO55_16825 PF13244 Domain of unknown function (DUF4040) LRO55_16825 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LRO55_16825 PF00361 Proton-conducting membrane transporter LRO55_16825 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LRO55_16830 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LRO55_16835 PF00361 Proton-conducting membrane transporter LRO55_16840 PF01899 Na+/H+ ion antiporter subunit LRO55_16845 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LRO55_16850 PF03334 Na+/H+ antiporter subunit LRO55_16855 PF02033 Ribosome-binding factor A LRO55_16860 PF04760 Translation initiation factor IF-2, N-terminal region LRO55_16860 PF00009 Elongation factor Tu GTP binding domain LRO55_16860 PF11987 Translation-initiation factor 2 LRO55_16860 PF08364 Bacterial translation initiation factor IF-2 associated region LRO55_16865 PF08529 NusA N-terminal domain LRO55_16865 PF13184 NusA-like KH domain LRO55_16865 PF00575 S1 RNA binding domain LRO55_16870 PF02576 RimP N-terminal domain LRO55_16870 PF17384 RimP C-terminal SH3 domain LRO55_16890 PF03840 Preprotein translocase SecG subunit LRO55_16895 PF00121 Triosephosphate isomerase LRO55_16900 PF00437 Type II/IV secretion system protein LRO55_16900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LRO55_16905 PF00482 Type II secretion system (T2SS), protein F LRO55_16915 PF01478 Type IV leader peptidase family LRO55_16915 PF06750 Bacterial Peptidase A24 N-terminal domain LRO55_16920 PF01121 Dephospho-CoA kinase LRO55_16930 PF00588 SpoU rRNA Methylase family LRO55_16930 PF08032 RNA 2'-O ribose methyltransferase substrate binding LRO55_16935 PF06865 Pyrimidine/purine nucleoside phosphorylase LRO55_16945 PF02463 RecF/RecN/SMC N terminal domain LRO55_16950 PF02622 Uncharacterized ACR, COG1678 LRO55_16955 PF03652 Holliday junction resolvase LRO55_16960 PF13533 Biotin-lipoyl like LRO55_16990 PF02805 Metal binding domain of Ada LRO55_16990 PF12833 Helix-turn-helix domain LRO55_16990 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LRO55_16990 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LRO55_17000 PF01066 CDP-alcohol phosphatidyltransferase LRO55_17010 PF08459 UvrC Helix-hairpin-helix N-terminal LRO55_17010 PF02151 UvrB/uvrC motif LRO55_17010 PF01541 GIY-YIG catalytic domain LRO55_17040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LRO55_17040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LRO55_17040 PF00378 Enoyl-CoA hydratase/isomerase LRO55_17045 PF02803 Thiolase, C-terminal domain LRO55_17045 PF00108 Thiolase, N-terminal domain LRO55_17060 PF00376 MerR family regulatory protein LRO55_17060 PF09278 MerR, DNA binding LRO55_17070 PF01323 DSBA-like thioredoxin domain LRO55_17085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_17085 PF00183 Hsp90 protein LRO55_17100 PF13726 Na+-H+ antiporter family LRO55_17100 PF03553 Na+/H+ antiporter family LRO55_17125 PF04998 RNA polymerase Rpb1, domain 5 LRO55_17125 PF05000 RNA polymerase Rpb1, domain 4 LRO55_17125 PF04983 RNA polymerase Rpb1, domain 3 LRO55_17125 PF04997 RNA polymerase Rpb1, domain 1 LRO55_17125 PF00623 RNA polymerase Rpb1, domain 2 LRO55_17130 PF04563 RNA polymerase beta subunit LRO55_17130 PF04561 RNA polymerase Rpb2, domain 2 LRO55_17130 PF04565 RNA polymerase Rpb2, domain 3 LRO55_17130 PF10385 RNA polymerase beta subunit external 1 domain LRO55_17130 PF00562 RNA polymerase Rpb2, domain 6 LRO55_17130 PF04560 RNA polymerase Rpb2, domain 7 LRO55_17135 PF16320 Ribosomal protein L7/L12 dimerisation domain LRO55_17135 PF00542 Ribosomal protein L7/L12 C-terminal domain LRO55_17140 PF00466 Ribosomal protein L10 LRO55_17145 PF00687 Ribosomal protein L1p/L10e family LRO55_17150 PF00298 Ribosomal protein L11, RNA binding domain LRO55_17150 PF03946 Ribosomal protein L11, N-terminal domain LRO55_17155 PF00467 KOW motif LRO55_17155 PF02357 Transcription termination factor nusG LRO55_17160 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LRO55_17170 PF03143 Elongation factor Tu C-terminal domain LRO55_17170 PF03144 Elongation factor Tu domain 2 LRO55_17170 PF00009 Elongation factor Tu GTP binding domain LRO55_17195 PF00425 chorismate binding enzyme LRO55_17195 PF04715 Anthranilate synthase component I, N terminal region LRO55_17200 PF13419 Haloacid dehalogenase-like hydrolase LRO55_17205 PF12401 Protein of unknown function (DUF2662) LRO55_17205 PF00498 FHA domain LRO55_17210 PF03958 Bacterial type II/III secretion system short domain LRO55_17210 PF00263 Bacterial type II and III secretion system protein LRO55_17225 PF00816 H-NS histone family LRO55_17250 PF03900 Porphobilinogen deaminase, C-terminal domain LRO55_17250 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LRO55_17255 PF04397 LytTr DNA-binding domain LRO55_17255 PF00072 Response regulator receiver domain LRO55_17260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_17260 PF07694 5TMR of 5TMR-LYT LRO55_17260 PF06580 Histidine kinase LRO55_17265 PF14698 Argininosuccinate lyase C-terminal LRO55_17265 PF00206 Lyase LRO55_17270 PF04362 Bacterial Fe(2+) trafficking LRO55_17275 PF01895 PhoU domain LRO55_17280 PF02321 Outer membrane efflux protein LRO55_17305 PF01964 Radical SAM ThiC family LRO55_17305 PF13667 ThiC-associated domain LRO55_17310 PF00293 NUDIX domain LRO55_17315 PF00149 Calcineurin-like phosphoesterase LRO55_17320 PF01258 Prokaryotic dksA/traR C4-type zinc finger LRO55_17325 PF00749 tRNA synthetases class I (E and Q), catalytic domain LRO55_17330 PF01098 Cell cycle protein LRO55_17335 PF02875 Mur ligase family, glutamate ligase domain LRO55_17335 PF08245 Mur ligase middle domain LRO55_17345 PF07664 Ferrous iron transport protein B C terminus LRO55_17345 PF02421 Ferrous iron transport protein B LRO55_17345 PF07670 Nucleoside recognition LRO55_17355 PF02899 Phage integrase, N-terminal SAM-like domain LRO55_17355 PF00589 Phage integrase family LRO55_17360 PF10411 Disulfide bond isomerase protein N-terminus LRO55_17360 PF13098 Thioredoxin-like domain LRO55_17365 PF01842 ACT domain LRO55_17365 PF00742 Homoserine dehydrogenase LRO55_17365 PF03447 Homoserine dehydrogenase, NAD binding domain LRO55_17370 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_17375 PF00768 D-alanyl-D-alanine carboxypeptidase LRO55_17380 PF00196 Bacterial regulatory proteins, luxR family LRO55_17380 PF00072 Response regulator receiver domain LRO55_17385 PF00512 His Kinase A (phospho-acceptor) domain LRO55_17385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LRO55_17390 PF00072 Response regulator receiver domain LRO55_17390 PF00158 Sigma-54 interaction domain LRO55_17390 PF02954 Bacterial regulatory protein, Fis family LRO55_17395 PF00595 PDZ domain LRO55_17395 PF03572 Peptidase family S41 LRO55_17400 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LRO55_17400 PF01676 Metalloenzyme superfamily LRO55_17405 PF03739 Lipopolysaccharide export system permease LptF/LptG LRO55_17415 PF00883 Cytosol aminopeptidase family, catalytic domain LRO55_17415 PF02789 Cytosol aminopeptidase family, N-terminal domain LRO55_17435 PF00677 Lumazine binding domain LRO55_17445 PF01872 RibD C-terminal domain LRO55_17445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LRO55_17450 PF03477 ATP cone domain LRO55_17455 PF00909 Ammonium Transporter Family LRO55_17460 PF00543 Nitrogen regulatory protein P-II LRO55_17480 PF00293 NUDIX domain LRO55_17495 PF00303 Thymidylate synthase LRO55_17515 PF11426 Tn7 transposition regulator TnsC LRO55_17515 PF13401 AAA domain LRO55_17535 PF03358 NADPH-dependent FMN reductase LRO55_17540 PF00155 Aminotransferase class I and II LRO55_17540 PF00392 Bacterial regulatory proteins, gntR family LRO55_17545 PF00596 Class II Aldolase and Adducin N-terminal domain LRO55_17550 PF00701 Dihydrodipicolinate synthetase family LRO55_17565 PF03573 outer membrane porin, OprD family LRO55_17570 PF00719 Inorganic pyrophosphatase LRO55_17585 PF13193 AMP-binding enzyme C-terminal domain LRO55_17585 PF00501 AMP-binding enzyme LRO55_17590 PF00521 DNA gyrase/topoisomerase IV, subunit A LRO55_17590 PF03989 DNA gyrase C-terminal domain, beta-propeller LRO55_17595 PF07690 Major Facilitator Superfamily LRO55_17600 PF03458 UPF0126 domain LRO55_17605 PF02810 SEC-C motif LRO55_17610 PF03471 Transporter associated domain LRO55_17610 PF03741 Integral membrane protein TerC family LRO55_17615 PF03641 Possible lysine decarboxylase LRO55_17620 PF07690 Major Facilitator Superfamily LRO55_17625 PF01183 Glycosyl hydrolases family 25 LRO55_17630 PF00817 impB/mucB/samB family LRO55_17630 PF11799 impB/mucB/samB family C-terminal domain LRO55_17630 PF11798 IMS family HHH motif LRO55_17645 PF11842 Domain of unknown function (DUF3362) LRO55_17645 PF04055 Radical SAM superfamily LRO55_17645 PF08497 Radical SAM N-terminal LRO55_17655 PF13411 MerR HTH family regulatory protein LRO55_17665 PF03358 NADPH-dependent FMN reductase LRO55_17680 PF00291 Pyridoxal-phosphate dependent enzyme LRO55_17740 PF01327 Polypeptide deformylase LRO55_17750 PF02481 DNA recombination-mediator protein A LRO55_17750 PF17782 DprA winged helix domain LRO55_17755 PF01300 Telomere recombination LRO55_17760 PF00892 EamA-like transporter family LRO55_17765 PF00440 Bacterial regulatory proteins, tetR family LRO55_17770 PF07690 Major Facilitator Superfamily LRO55_17780 PF00255 Glutathione peroxidase LRO55_17790 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LRO55_17795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LRO55_17795 PF02874 ATP synthase alpha/beta family, beta-barrel domain LRO55_17800 PF00231 ATP synthase LRO55_17805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LRO55_17805 PF00306 ATP synthase alpha/beta chain, C terminal domain LRO55_17805 PF02874 ATP synthase alpha/beta family, beta-barrel domain LRO55_17810 PF00213 ATP synthase delta (OSCP) subunit LRO55_17815 PF00430 ATP synthase B/B' CF(0) LRO55_17820 PF00137 ATP synthase subunit C LRO55_17825 PF00119 ATP synthase A chain LRO55_17845 PF00005 ABC transporter LRO55_17850 PF00950 ABC 3 transport family LRO55_17855 PF01810 LysE type translocator LRO55_17860 PF04261 Dyp-type peroxidase family LRO55_17865 PF03949 Malic enzyme, NAD binding domain LRO55_17865 PF00390 Malic enzyme, N-terminal domain LRO55_17870 PF05746 DALR anticodon binding domain LRO55_17870 PF03485 Arginyl tRNA synthetase N terminal domain LRO55_17870 PF00750 tRNA synthetases class I (R) LRO55_17890 PF05726 Pirin C-terminal cupin domain LRO55_17890 PF02678 Pirin LRO55_17900 PF01475 Ferric uptake regulator family LRO55_17905 PF03551 Transcriptional regulator PadR-like family LRO55_17915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LRO55_17915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LRO55_17920 PF00117 Glutamine amidotransferase class-I LRO55_17920 PF00958 GMP synthase C terminal domain LRO55_17920 PF02540 NAD synthase LRO55_17925 PF04286 Protein of unknown function (DUF445) LRO55_17930 PF07681 DoxX LRO55_17935 PF09335 SNARE associated Golgi protein LRO55_17950 PF13614 AAA domain LRO55_17960 PF01722 BolA-like protein LRO55_17975 PF01648 4'-phosphopantetheinyl transferase superfamily LRO55_17980 PF16363 GDP-mannose 4,6 dehydratase LRO55_17995 PF00668 Condensation domain LRO55_17995 PF00550 Phosphopantetheine attachment site LRO55_17995 PF00975 Thioesterase domain LRO55_17995 PF00501 AMP-binding enzyme LRO55_17995 PF13193 AMP-binding enzyme C-terminal domain LRO55_18000 PF00501 AMP-binding enzyme LRO55_18000 PF13193 AMP-binding enzyme C-terminal domain LRO55_18000 PF00668 Condensation domain LRO55_18000 PF16197 Ketoacyl-synthetase C-terminal extension LRO55_18000 PF02801 Beta-ketoacyl synthase, C-terminal domain LRO55_18000 PF08659 KR domain LRO55_18000 PF00550 Phosphopantetheine attachment site LRO55_18000 PF14765 Polyketide synthase dehydratase LRO55_18000 PF00109 Beta-ketoacyl synthase, N-terminal domain LRO55_18005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_18005 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_18005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_18010 PF00501 AMP-binding enzyme LRO55_18015 PF00196 Bacterial regulatory proteins, luxR family LRO55_18015 PF03472 Autoinducer binding domain LRO55_18025 PF00765 Autoinducer synthase LRO55_18030 PF00083 Sugar (and other) transporter LRO55_18030 PF07690 Major Facilitator Superfamily LRO55_18035 PF00378 Enoyl-CoA hydratase/isomerase LRO55_18040 PF00378 Enoyl-CoA hydratase/isomerase LRO55_18045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LRO55_18045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LRO55_18045 PF02770 Acyl-CoA dehydrogenase, middle domain LRO55_18050 PF00501 AMP-binding enzyme LRO55_18050 PF13193 AMP-binding enzyme C-terminal domain LRO55_18055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LRO55_18055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LRO55_18060 PF00171 Aldehyde dehydrogenase family LRO55_18070 PF00324 Amino acid permease LRO55_18075 PF00324 Amino acid permease LRO55_18080 PF01042 Endoribonuclease L-PSP LRO55_18085 PF00842 Alanine racemase, C-terminal domain LRO55_18085 PF01168 Alanine racemase, N-terminal domain LRO55_18090 PF01266 FAD dependent oxidoreductase LRO55_18095 PF01037 Lrp/AsnC ligand binding domain LRO55_18105 PF00593 TonB dependent receptor LRO55_18105 PF07715 TonB-dependent Receptor Plug Domain LRO55_18120 PF00849 RNA pseudouridylate synthase LRO55_18160 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LRO55_18160 PF13296 Putative type VI secretion system Rhs element Vgr LRO55_18160 PF04717 Type VI secretion system, phage-baseplate injector LRO55_18205 PF00330 Aconitase family (aconitate hydratase) LRO55_18205 PF00694 Aconitase C-terminal domain LRO55_18225 PF00392 Bacterial regulatory proteins, gntR family LRO55_18225 PF07729 FCD domain LRO55_18245 PF00392 Bacterial regulatory proteins, gntR family LRO55_18245 PF07729 FCD domain LRO55_18260 PF16363 GDP-mannose 4,6 dehydratase LRO55_18265 PF00342 Phosphoglucose isomerase LRO55_18270 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LRO55_18270 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LRO55_18270 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LRO55_18275 PF00483 Nucleotidyl transferase LRO55_18285 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LRO55_18290 PF17836 PglD N-terminal domain LRO55_18290 PF14602 Hexapeptide repeat of succinyl-transferase LRO55_18290 PF00132 Bacterial transferase hexapeptide (six repeats) LRO55_18295 PF02397 Bacterial sugar transferase LRO55_18325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LRO55_18325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LRO55_18350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LRO55_18350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LRO55_18350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LRO55_18355 PF02350 UDP-N-acetylglucosamine 2-epimerase LRO55_18360 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LRO55_18360 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LRO55_18360 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LRO55_18365 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LRO55_18365 PF02563 Polysaccharide biosynthesis/export protein LRO55_18365 PF10531 SLBB domain LRO55_18370 PF01451 Low molecular weight phosphotyrosine protein phosphatase LRO55_18375 PF02706 Chain length determinant protein LRO55_18375 PF13807 G-rich domain on putative tyrosine kinase LRO55_18375 PF13614 AAA domain LRO55_18380 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LRO55_18380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LRO55_18385 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LRO55_18385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LRO55_18390 PF03023 Lipid II flippase MurJ LRO55_18395 PF01510 N-acetylmuramoyl-L-alanine amidase LRO55_18400 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LRO55_18400 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LRO55_18410 PF04185 Phosphoesterase family LRO55_18410 PF05506 Domain of unknown function (DUF756) LRO55_18415 PF03725 3' exoribonuclease family, domain 2 LRO55_18415 PF01138 3' exoribonuclease family, domain 1 LRO55_18420 PF00487 Fatty acid desaturase LRO55_18425 PF00175 Oxidoreductase NAD-binding domain LRO55_18430 PF00440 Bacterial regulatory proteins, tetR family LRO55_18435 PF00440 Bacterial regulatory proteins, tetR family LRO55_18435 PF08360 QacR-like protein, C-terminal region LRO55_18440 PF01323 DSBA-like thioredoxin domain LRO55_18450 PF13419 Haloacid dehalogenase-like hydrolase LRO55_18455 PF00106 short chain dehydrogenase LRO55_18470 PF00696 Amino acid kinase family LRO55_18470 PF00583 Acetyltransferase (GNAT) family LRO55_18475 PF09084 NMT1/THI5 like LRO55_18480 PF09084 NMT1/THI5 like LRO55_18485 PF00296 Luciferase-like monooxygenase LRO55_18490 PF00528 Binding-protein-dependent transport system inner membrane component LRO55_18495 PF00005 ABC transporter LRO55_18500 PF00440 Bacterial regulatory proteins, tetR family LRO55_18500 PF08362 YcdC-like protein, C-terminal region LRO55_18505 PF01048 Phosphorylase superfamily LRO55_18515 PF06574 FAD synthetase LRO55_18515 PF01687 Riboflavin kinase LRO55_18520 PF00133 tRNA synthetases class I (I, L, M and V) LRO55_18520 PF06827 Zinc finger found in FPG and IleRS LRO55_18520 PF08264 Anticodon-binding domain of tRNA LRO55_18525 PF01252 Signal peptidase (SPase) II LRO55_18530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LRO55_18570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LRO55_18575 PF07859 alpha/beta hydrolase fold LRO55_18595 PF03466 LysR substrate binding domain LRO55_18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LRO55_18600 PF01025 GrpE LRO55_18605 PF00012 Hsp70 protein LRO55_18630 PF13406 Transglycosylase SLT domain LRO55_18635 PF02222 ATP-grasp domain LRO55_18635 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LRO55_18640 PF00731 AIR carboxylase LRO55_18650 PF01225 Mur ligase family, catalytic domain LRO55_18650 PF02875 Mur ligase family, glutamate ligase domain LRO55_18650 PF08245 Mur ligase middle domain LRO55_18660 PF01569 PAP2 superfamily LRO55_18665 PF03741 Integral membrane protein TerC family LRO55_18675 PF03738 Glutathionylspermidine synthase preATP-grasp LRO55_18680 PF00355 Rieske [2Fe-2S] domain LRO55_18685 PF01979 Amidohydrolase family LRO55_18690 PF00156 Phosphoribosyl transferase domain LRO55_18700 PF10411 Disulfide bond isomerase protein N-terminus LRO55_18700 PF13098 Thioredoxin-like domain LRO55_18705 PF01545 Cation efflux family LRO55_18705 PF16916 Dimerisation domain of Zinc Transporter LRO55_18710 PF02583 Metal-sensitive transcriptional repressor LRO55_18715 PF01926 50S ribosome-binding GTPase LRO55_18715 PF12631 MnmE helical domain LRO55_18715 PF10396 GTP-binding protein TrmE N-terminus LRO55_18720 PF02096 60Kd inner membrane protein LRO55_18720 PF14849 YidC periplasmic domain LRO55_18725 PF01809 Putative membrane protein insertion efficiency factor LRO55_18730 PF00825 Ribonuclease P LRO55_18735 PF00468 Ribosomal protein L34