locus-tag class description BUM88_00015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BUM88_00020 PF01252 Signal peptidase (SPase) II BUM88_00025 PF06827 Zinc finger found in FPG and IleRS BUM88_00025 PF00133 tRNA synthetases class I (I, L, M and V) BUM88_00025 PF08264 Anticodon-binding domain of tRNA BUM88_00030 PF01687 Riboflavin kinase BUM88_00030 PF06574 FAD synthetase BUM88_00040 PF01048 Phosphorylase superfamily BUM88_00045 PF08362 YcdC-like protein, C-terminal region BUM88_00045 PF00440 Bacterial regulatory proteins, tetR family BUM88_00050 PF00005 ABC transporter BUM88_00055 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_00060 PF00296 Luciferase-like monooxygenase BUM88_00065 PF09084 NMT1/THI5 like BUM88_00070 PF09084 NMT1/THI5 like BUM88_00075 PF00696 Amino acid kinase family BUM88_00075 PF00583 Acetyltransferase (GNAT) family BUM88_00090 PF00106 short chain dehydrogenase BUM88_00095 PF13419 Haloacid dehalogenase-like hydrolase BUM88_00105 PF01323 DSBA-like thioredoxin domain BUM88_00110 PF00440 Bacterial regulatory proteins, tetR family BUM88_00110 PF08360 QacR-like protein, C-terminal region BUM88_00115 PF00440 Bacterial regulatory proteins, tetR family BUM88_00120 PF00175 Oxidoreductase NAD-binding domain BUM88_00125 PF00487 Fatty acid desaturase BUM88_00130 PF03725 3' exoribonuclease family, domain 2 BUM88_00130 PF01138 3' exoribonuclease family, domain 1 BUM88_00140 PF04185 Phosphoesterase family BUM88_00140 PF05506 Domain of unknown function (DUF756) BUM88_00150 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BUM88_00150 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BUM88_00155 PF01510 N-acetylmuramoyl-L-alanine amidase BUM88_00160 PF03023 Lipid II flippase MurJ BUM88_00165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BUM88_00165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BUM88_00170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BUM88_00170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BUM88_00175 PF02706 Chain length determinant protein BUM88_00175 PF13807 G-rich domain on putative tyrosine kinase BUM88_00175 PF13614 AAA domain BUM88_00180 PF01451 Low molecular weight phosphotyrosine protein phosphatase BUM88_00185 PF02563 Polysaccharide biosynthesis/export protein BUM88_00185 PF18412 Outer-membrane lipoprotein Wza C-terminal domain BUM88_00185 PF10531 SLBB domain BUM88_00190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BUM88_00190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BUM88_00190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BUM88_00195 PF02350 UDP-N-acetylglucosamine 2-epimerase BUM88_00200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BUM88_00200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BUM88_00200 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BUM88_00225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BUM88_00225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BUM88_00240 PF02397 Bacterial sugar transferase BUM88_00245 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_00245 PF14602 Hexapeptide repeat of succinyl-transferase BUM88_00245 PF17836 PglD N-terminal domain BUM88_00250 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BUM88_00255 PF02719 Polysaccharide biosynthesis protein BUM88_00260 PF00483 Nucleotidyl transferase BUM88_00265 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BUM88_00265 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BUM88_00265 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BUM88_00270 PF00342 Phosphoglucose isomerase BUM88_00275 PF16363 GDP-mannose 4,6 dehydratase BUM88_00280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BUM88_00280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BUM88_00280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BUM88_00280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BUM88_00285 PF02652 L-lactate permease BUM88_00290 PF00392 Bacterial regulatory proteins, gntR family BUM88_00290 PF07729 FCD domain BUM88_00295 PF01070 FMN-dependent dehydrogenase BUM88_00300 PF09330 D-lactate dehydrogenase, membrane binding BUM88_00300 PF01565 FAD binding domain BUM88_00305 PF00155 Aminotransferase class I and II BUM88_00310 PF00392 Bacterial regulatory proteins, gntR family BUM88_00310 PF07729 FCD domain BUM88_00320 PF00285 Citrate synthase, C-terminal domain BUM88_00325 PF00694 Aconitase C-terminal domain BUM88_00325 PF00330 Aconitase family (aconitate hydratase) BUM88_00360 PF00293 NUDIX domain BUM88_00425 PF00849 RNA pseudouridylate synthase BUM88_00440 PF07715 TonB-dependent Receptor Plug Domain BUM88_00440 PF00593 TonB dependent receptor BUM88_00450 PF01037 Lrp/AsnC ligand binding domain BUM88_00455 PF01266 FAD dependent oxidoreductase BUM88_00460 PF01168 Alanine racemase, N-terminal domain BUM88_00460 PF00842 Alanine racemase, C-terminal domain BUM88_00465 PF01042 Endoribonuclease L-PSP BUM88_00470 PF00324 Amino acid permease BUM88_00475 PF00324 Amino acid permease BUM88_00485 PF00171 Aldehyde dehydrogenase family BUM88_00490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BUM88_00490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BUM88_00495 PF13193 AMP-binding enzyme C-terminal domain BUM88_00495 PF00501 AMP-binding enzyme BUM88_00500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_00500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_00500 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_00505 PF00378 Enoyl-CoA hydratase/isomerase BUM88_00510 PF00378 Enoyl-CoA hydratase/isomerase BUM88_00515 PF07690 Major Facilitator Superfamily BUM88_00515 PF00083 Sugar (and other) transporter BUM88_00520 PF00765 Autoinducer synthase BUM88_00530 PF03472 Autoinducer binding domain BUM88_00530 PF00196 Bacterial regulatory proteins, luxR family BUM88_00535 PF00501 AMP-binding enzyme BUM88_00540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_00540 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_00540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_00545 PF02801 Beta-ketoacyl synthase, C-terminal domain BUM88_00545 PF00550 Phosphopantetheine attachment site BUM88_00545 PF14765 Polyketide synthase dehydratase BUM88_00545 PF08659 KR domain BUM88_00545 PF16197 Ketoacyl-synthetase C-terminal extension BUM88_00545 PF13193 AMP-binding enzyme C-terminal domain BUM88_00545 PF00501 AMP-binding enzyme BUM88_00545 PF00109 Beta-ketoacyl synthase, N-terminal domain BUM88_00545 PF00668 Condensation domain BUM88_00550 PF00975 Thioesterase domain BUM88_00550 PF00501 AMP-binding enzyme BUM88_00550 PF13193 AMP-binding enzyme C-terminal domain BUM88_00550 PF00668 Condensation domain BUM88_00550 PF00550 Phosphopantetheine attachment site BUM88_00565 PF16363 GDP-mannose 4,6 dehydratase BUM88_00570 PF01648 4'-phosphopantetheinyl transferase superfamily BUM88_00580 PF01722 BolA-like protein BUM88_00590 PF13614 AAA domain BUM88_00605 PF09335 SNARE associated Golgi protein BUM88_00610 PF07681 DoxX BUM88_00615 PF04286 Protein of unknown function (DUF445) BUM88_00620 PF02540 NAD synthase BUM88_00620 PF00117 Glutamine amidotransferase class-I BUM88_00620 PF00958 GMP synthase C terminal domain BUM88_00625 PF03551 Transcriptional regulator PadR-like family BUM88_00630 PF01475 Ferric uptake regulator family BUM88_00640 PF05726 Pirin C-terminal cupin domain BUM88_00640 PF02678 Pirin BUM88_00660 PF00750 tRNA synthetases class I (R) BUM88_00660 PF05746 DALR anticodon binding domain BUM88_00660 PF03485 Arginyl tRNA synthetase N terminal domain BUM88_00665 PF00390 Malic enzyme, N-terminal domain BUM88_00665 PF03949 Malic enzyme, NAD binding domain BUM88_00670 PF04261 Dyp-type peroxidase family BUM88_00675 PF01810 LysE type translocator BUM88_00680 PF00950 ABC 3 transport family BUM88_00685 PF00005 ABC transporter BUM88_00705 PF00119 ATP synthase A chain BUM88_00710 PF00137 ATP synthase subunit C BUM88_00715 PF00430 ATP synthase B/B' CF(0) BUM88_00720 PF00213 ATP synthase delta (OSCP) subunit BUM88_00725 PF02874 ATP synthase alpha/beta family, beta-barrel domain BUM88_00725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BUM88_00725 PF00306 ATP synthase alpha/beta chain, C terminal domain BUM88_00730 PF00231 ATP synthase BUM88_00735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BUM88_00735 PF02874 ATP synthase alpha/beta family, beta-barrel domain BUM88_00740 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BUM88_00745 PF11008 Protein of unknown function (DUF2846) BUM88_00755 PF00255 Glutathione peroxidase BUM88_00765 PF07690 Major Facilitator Superfamily BUM88_00770 PF00440 Bacterial regulatory proteins, tetR family BUM88_00775 PF00892 EamA-like transporter family BUM88_00780 PF01300 Telomere recombination BUM88_00785 PF17782 DprA winged helix domain BUM88_00785 PF02481 DNA recombination-mediator protein A BUM88_00795 PF01327 Polypeptide deformylase BUM88_00855 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_00880 PF13411 MerR HTH family regulatory protein BUM88_00890 PF08497 Radical SAM N-terminal BUM88_00890 PF11842 Domain of unknown function (DUF3362) BUM88_00890 PF04055 Radical SAM superfamily BUM88_00910 PF11798 IMS family HHH motif BUM88_00910 PF11799 impB/mucB/samB family C-terminal domain BUM88_00910 PF00817 impB/mucB/samB family BUM88_00915 PF01183 Glycosyl hydrolases family 25 BUM88_00920 PF07690 Major Facilitator Superfamily BUM88_00925 PF03641 Possible lysine decarboxylase BUM88_00930 PF03741 Integral membrane protein TerC family BUM88_00930 PF03471 Transporter associated domain BUM88_00935 PF02810 SEC-C motif BUM88_00940 PF03458 UPF0126 domain BUM88_00945 PF07690 Major Facilitator Superfamily BUM88_00950 PF00521 DNA gyrase/topoisomerase IV, subunit A BUM88_00950 PF03989 DNA gyrase C-terminal domain, beta-propeller BUM88_00955 PF00501 AMP-binding enzyme BUM88_00955 PF13193 AMP-binding enzyme C-terminal domain BUM88_00970 PF00719 Inorganic pyrophosphatase BUM88_00975 PF03573 outer membrane porin, OprD family BUM88_00995 PF03358 NADPH-dependent FMN reductase BUM88_01000 PF01078 Magnesium chelatase, subunit ChlI BUM88_01000 PF13335 Magnesium chelatase, subunit ChlI C-terminal BUM88_01010 PF00543 Nitrogen regulatory protein P-II BUM88_01015 PF00909 Ammonium Transporter Family BUM88_01020 PF03477 ATP cone domain BUM88_01025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BUM88_01025 PF01872 RibD C-terminal domain BUM88_01035 PF00677 Lumazine binding domain BUM88_01055 PF02789 Cytosol aminopeptidase family, N-terminal domain BUM88_01055 PF00883 Cytosol aminopeptidase family, catalytic domain BUM88_01065 PF03739 Lipopolysaccharide export system permease LptF/LptG BUM88_01070 PF01676 Metalloenzyme superfamily BUM88_01070 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BUM88_01075 PF00595 PDZ domain BUM88_01075 PF03572 Peptidase family S41 BUM88_01080 PF02954 Bacterial regulatory protein, Fis family BUM88_01080 PF00158 Sigma-54 interaction domain BUM88_01080 PF00072 Response regulator receiver domain BUM88_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_01085 PF00512 His Kinase A (phospho-acceptor) domain BUM88_01090 PF00196 Bacterial regulatory proteins, luxR family BUM88_01090 PF00072 Response regulator receiver domain BUM88_01095 PF00768 D-alanyl-D-alanine carboxypeptidase BUM88_01100 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_01105 PF01842 ACT domain BUM88_01105 PF00742 Homoserine dehydrogenase BUM88_01105 PF03447 Homoserine dehydrogenase, NAD binding domain BUM88_01110 PF10411 Disulfide bond isomerase protein N-terminus BUM88_01110 PF13098 Thioredoxin-like domain BUM88_01115 PF00589 Phage integrase family BUM88_01115 PF02899 Phage integrase, N-terminal SAM-like domain BUM88_01125 PF02421 Ferrous iron transport protein B BUM88_01125 PF07670 Nucleoside recognition BUM88_01125 PF07664 Ferrous iron transport protein B C terminus BUM88_01135 PF08245 Mur ligase middle domain BUM88_01135 PF02875 Mur ligase family, glutamate ligase domain BUM88_01140 PF01098 Cell cycle protein BUM88_01145 PF00749 tRNA synthetases class I (E and Q), catalytic domain BUM88_01150 PF01258 Prokaryotic dksA/traR C4-type zinc finger BUM88_01155 PF00149 Calcineurin-like phosphoesterase BUM88_01160 PF00293 NUDIX domain BUM88_01165 PF01964 Radical SAM ThiC family BUM88_01165 PF13667 ThiC-associated domain BUM88_01190 PF02321 Outer membrane efflux protein BUM88_01195 PF01895 PhoU domain BUM88_01200 PF04362 Bacterial Fe(2+) trafficking BUM88_01205 PF14698 Argininosuccinate lyase C-terminal BUM88_01205 PF00206 Lyase BUM88_01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_01210 PF06580 Histidine kinase BUM88_01210 PF07694 5TMR of 5TMR-LYT BUM88_01215 PF04397 LytTr DNA-binding domain BUM88_01215 PF00072 Response regulator receiver domain BUM88_01220 PF03900 Porphobilinogen deaminase, C-terminal domain BUM88_01220 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BUM88_01245 PF00816 H-NS histone family BUM88_01260 PF00263 Bacterial type II and III secretion system protein BUM88_01260 PF03958 Bacterial type II/III secretion system short domain BUM88_01265 PF12401 Protein of unknown function (DUF2662) BUM88_01265 PF00498 FHA domain BUM88_01270 PF13419 Haloacid dehalogenase-like hydrolase BUM88_01275 PF04715 Anthranilate synthase component I, N terminal region BUM88_01275 PF00425 chorismate binding enzyme BUM88_01300 PF03144 Elongation factor Tu domain 2 BUM88_01300 PF03143 Elongation factor Tu C-terminal domain BUM88_01300 PF00009 Elongation factor Tu GTP binding domain BUM88_01310 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BUM88_01315 PF02357 Transcription termination factor nusG BUM88_01315 PF00467 KOW motif BUM88_01320 PF00298 Ribosomal protein L11, RNA binding domain BUM88_01320 PF03946 Ribosomal protein L11, N-terminal domain BUM88_01325 PF00687 Ribosomal protein L1p/L10e family BUM88_01330 PF00466 Ribosomal protein L10 BUM88_01335 PF00542 Ribosomal protein L7/L12 C-terminal domain BUM88_01335 PF16320 Ribosomal protein L7/L12 dimerisation domain BUM88_01345 PF00562 RNA polymerase Rpb2, domain 6 BUM88_01345 PF04560 RNA polymerase Rpb2, domain 7 BUM88_01345 PF04565 RNA polymerase Rpb2, domain 3 BUM88_01345 PF04561 RNA polymerase Rpb2, domain 2 BUM88_01345 PF04563 RNA polymerase beta subunit BUM88_01345 PF10385 RNA polymerase beta subunit external 1 domain BUM88_01350 PF04997 RNA polymerase Rpb1, domain 1 BUM88_01350 PF00623 RNA polymerase Rpb1, domain 2 BUM88_01350 PF04983 RNA polymerase Rpb1, domain 3 BUM88_01350 PF05000 RNA polymerase Rpb1, domain 4 BUM88_01350 PF04998 RNA polymerase Rpb1, domain 5 BUM88_01375 PF03553 Na+/H+ antiporter family BUM88_01375 PF13726 Na+-H+ antiporter family BUM88_01390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_01390 PF00183 Hsp90 protein BUM88_01405 PF01323 DSBA-like thioredoxin domain BUM88_01415 PF09278 MerR, DNA binding BUM88_01415 PF00376 MerR family regulatory protein BUM88_01435 PF00108 Thiolase, N-terminal domain BUM88_01435 PF02803 Thiolase, C-terminal domain BUM88_01440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BUM88_01440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BUM88_01440 PF00378 Enoyl-CoA hydratase/isomerase BUM88_01475 PF01541 GIY-YIG catalytic domain BUM88_01475 PF02151 UvrB/uvrC motif BUM88_01475 PF08459 UvrC Helix-hairpin-helix N-terminal BUM88_01485 PF01066 CDP-alcohol phosphatidyltransferase BUM88_01490 PF02805 Metal binding domain of Ada BUM88_01490 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BUM88_01490 PF12833 Helix-turn-helix domain BUM88_01490 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BUM88_01520 PF13533 Biotin-lipoyl like BUM88_01525 PF03652 Holliday junction resolvase BUM88_01530 PF02622 Uncharacterized ACR, COG1678 BUM88_01535 PF02463 RecF/RecN/SMC N terminal domain BUM88_01545 PF06865 Pyrimidine/purine nucleoside phosphorylase BUM88_01550 PF00588 SpoU rRNA Methylase family BUM88_01550 PF08032 RNA 2'-O ribose methyltransferase substrate binding BUM88_01560 PF01121 Dephospho-CoA kinase BUM88_01565 PF06750 Bacterial Peptidase A24 N-terminal domain BUM88_01565 PF01478 Type IV leader peptidase family BUM88_01570 PF00482 Type II secretion system (T2SS), protein F BUM88_01575 PF00437 Type II/IV secretion system protein BUM88_01575 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BUM88_01580 PF00121 Triosephosphate isomerase BUM88_01585 PF03840 Preprotein translocase SecG subunit BUM88_01605 PF02576 RimP N-terminal domain BUM88_01605 PF17384 RimP C-terminal SH3 domain BUM88_01610 PF00575 S1 RNA binding domain BUM88_01610 PF13184 NusA-like KH domain BUM88_01610 PF08529 NusA N-terminal domain BUM88_01615 PF04760 Translation initiation factor IF-2, N-terminal region BUM88_01615 PF00009 Elongation factor Tu GTP binding domain BUM88_01615 PF08364 Bacterial translation initiation factor IF-2 associated region BUM88_01615 PF11987 Translation-initiation factor 2 BUM88_01620 PF02033 Ribosome-binding factor A BUM88_01630 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BUM88_01640 PF00361 Proton-conducting membrane transporter BUM88_01645 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BUM88_01650 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BUM88_01650 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BUM88_01650 PF00361 Proton-conducting membrane transporter BUM88_01650 PF13244 Domain of unknown function (DUF4040) BUM88_01665 PF01502 Phosphoribosyl-AMP cyclohydrolase BUM88_01675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BUM88_01680 PF01494 FAD binding domain BUM88_01685 PF03109 ABC1 family BUM88_01695 PF01209 ubiE/COQ5 methyltransferase family BUM88_01705 PF03976 Polyphosphate kinase 2 (PPK2) BUM88_01715 PF17946 RecC C-terminal domain BUM88_01720 PF00580 UvrD/REP helicase N-terminal domain BUM88_01720 PF13361 UvrD-like helicase C-terminal domain BUM88_01720 PF12705 PD-(D/E)XK nuclease superfamily BUM88_01725 PF13538 UvrD-like helicase C-terminal domain BUM88_01735 PF00312 Ribosomal protein S15 BUM88_01740 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BUM88_01740 PF00575 S1 RNA binding domain BUM88_01740 PF01138 3' exoribonuclease family, domain 1 BUM88_01740 PF03725 3' exoribonuclease family, domain 2 BUM88_01740 PF00013 KH domain BUM88_01745 PF01544 CorA-like Mg2+ transporter protein BUM88_01755 PF00226 DnaJ domain BUM88_01755 PF01556 DnaJ C terminal domain BUM88_01765 PF01430 Hsp33 protein BUM88_01770 PF00999 Sodium/hydrogen exchanger family BUM88_01770 PF02254 TrkA-N domain BUM88_01775 PF17764 3′ DNA-binding domain (3′BD) BUM88_01775 PF18074 Primosomal protein N C-terminal domain BUM88_01775 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BUM88_01775 PF00271 Helicase conserved C-terminal domain BUM88_01775 PF00270 DEAD/DEAH box helicase BUM88_01780 PF00482 Type II secretion system (T2SS), protein F BUM88_01785 PF08334 Type II secretion system (T2SS), protein G BUM88_01785 PF07963 Prokaryotic N-terminal methylation motif BUM88_01800 PF01588 Putative tRNA binding domain BUM88_01805 PF00795 Carbon-nitrogen hydrolase BUM88_01810 PF03471 Transporter associated domain BUM88_01810 PF00571 CBS domain BUM88_01815 PF01206 Sulfurtransferase TusA BUM88_01835 PF01177 Asp/Glu/Hydantoin racemase BUM88_01845 PF00762 Ferrochelatase BUM88_01850 PF00753 Metallo-beta-lactamase superfamily BUM88_01855 PF03884 DNA gyrase inhibitor YacG BUM88_01865 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_01865 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BUM88_01875 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BUM88_01890 PF01197 Ribosomal protein L31 BUM88_01895 PF03109 ABC1 family BUM88_01900 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BUM88_01900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_01905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_01905 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_01905 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BUM88_01910 PF01554 MatE BUM88_01920 PF04055 Radical SAM superfamily BUM88_01920 PF06969 HemN C-terminal domain BUM88_01925 PF00106 short chain dehydrogenase BUM88_01930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_01930 PF03466 LysR substrate binding domain BUM88_01945 PF00501 AMP-binding enzyme BUM88_01945 PF13193 AMP-binding enzyme C-terminal domain BUM88_01950 PF12111 Polyribonucleotide phosphorylase C terminal BUM88_01950 PF10150 Ribonuclease E/G family BUM88_01950 PF00575 S1 RNA binding domain BUM88_01960 PF01479 S4 domain BUM88_01960 PF00849 RNA pseudouridylate synthase BUM88_01970 PF13280 WYL domain BUM88_01970 PF08279 HTH domain BUM88_01975 PF02798 Glutathione S-transferase, N-terminal domain BUM88_01985 PF03466 LysR substrate binding domain BUM88_01985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_01990 PF12706 Beta-lactamase superfamily domain BUM88_01995 PF00141 Peroxidase BUM88_02000 PF01590 GAF domain BUM88_02000 PF05524 PEP-utilising enzyme, N-terminal BUM88_02000 PF00391 PEP-utilising enzyme, mobile domain BUM88_02000 PF02896 PEP-utilising enzyme, TIM barrel domain BUM88_02005 PF00293 NUDIX domain BUM88_02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_02030 PF03466 LysR substrate binding domain BUM88_02040 PF00330 Aconitase family (aconitate hydratase) BUM88_02045 PF00694 Aconitase C-terminal domain BUM88_02055 PF00180 Isocitrate/isopropylmalate dehydrogenase BUM88_02070 PF01176 Translation initiation factor 1A / IF-1 BUM88_02080 PF01416 tRNA pseudouridine synthase BUM88_02100 PF02774 Semialdehyde dehydrogenase, dimerisation domain BUM88_02100 PF01118 Semialdehyde dehydrogenase, NAD binding domain BUM88_02110 PF00375 Sodium:dicarboxylate symporter family BUM88_02120 PF03279 Bacterial lipid A biosynthesis acyltransferase BUM88_02135 PF04102 SlyX BUM88_02140 PF00107 Zinc-binding dehydrogenase BUM88_02140 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_02145 PF01638 HxlR-like helix-turn-helix BUM88_02155 PF01396 Topoisomerase DNA binding C4 zinc finger BUM88_02155 PF08272 Topoisomerase I zinc-ribbon-like BUM88_02155 PF01751 Toprim domain BUM88_02155 PF01131 DNA topoisomerase BUM88_02170 PF13361 UvrD-like helicase C-terminal domain BUM88_02170 PF00580 UvrD/REP helicase N-terminal domain BUM88_02175 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BUM88_02195 PF02254 TrkA-N domain BUM88_02195 PF00999 Sodium/hydrogen exchanger family BUM88_02200 PF00471 Ribosomal protein L33 BUM88_02205 PF00830 Ribosomal L28 family BUM88_02210 PF00171 Aldehyde dehydrogenase family BUM88_02220 PF00551 Formyl transferase BUM88_02220 PF01842 ACT domain BUM88_02230 PF01618 MotA/TolQ/ExbB proton channel family BUM88_02235 PF02472 Biopolymer transport protein ExbD/TolR BUM88_02240 PF01625 Peptide methionine sulfoxide reductase BUM88_02250 PF00186 Dihydrofolate reductase BUM88_02255 PF00303 Thymidylate synthase BUM88_02270 PF01790 Prolipoprotein diacylglyceryl transferase BUM88_02290 PF00902 Sec-independent protein translocase protein (TatC) BUM88_02295 PF02416 mttA/Hcf106 family BUM88_02300 PF02416 mttA/Hcf106 family BUM88_02310 PF01725 Ham1 family BUM88_02320 PF07021 Methionine biosynthesis protein MetW BUM88_02320 PF00561 alpha/beta hydrolase fold BUM88_02325 PF00561 alpha/beta hydrolase fold BUM88_02330 PF00682 HMGL-like BUM88_02330 PF08502 LeuA allosteric (dimerisation) domain BUM88_02335 PF18331 PKHD-type hydroxylase C-terminal domain BUM88_02335 PF13640 2OG-Fe(II) oxygenase superfamily BUM88_02340 PF07715 TonB-dependent Receptor Plug Domain BUM88_02340 PF00593 TonB dependent receptor BUM88_02345 PF05697 Bacterial trigger factor protein (TF) BUM88_02345 PF05698 Bacterial trigger factor protein (TF) C-terminus BUM88_02345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BUM88_02350 PF00574 Clp protease BUM88_02355 PF10431 C-terminal, D2-small domain, of ClpB protein BUM88_02355 PF07724 AAA domain (Cdc48 subfamily) BUM88_02355 PF06689 ClpX C4-type zinc finger BUM88_02370 PF05683 Fumarase C-terminus BUM88_02370 PF05681 Fumarate hydratase (Fumerase) BUM88_02375 PF07085 DRTGG domain BUM88_02375 PF01515 Phosphate acetyl/butaryl transferase BUM88_02380 PF00871 Acetokinase family BUM88_02390 PF00920 Dehydratase family BUM88_02395 PF01081 KDPG and KHG aldolase BUM88_02400 PF02447 GntP family permease BUM88_02405 PF01202 Shikimate kinase BUM88_02410 PF00171 Aldehyde dehydrogenase family BUM88_02415 PF00171 Aldehyde dehydrogenase family BUM88_02420 PF00561 alpha/beta hydrolase fold BUM88_02430 PF00933 Glycosyl hydrolase family 3 N terminal domain BUM88_02435 PF17804 Tail specific protease N-terminal domain BUM88_02435 PF03572 Peptidase family S41 BUM88_02435 PF11818 C-terminal domain of tail specific protease (DUF3340) BUM88_02435 PF00595 PDZ domain BUM88_02440 PF13439 Glycosyltransferase Family 4 BUM88_02440 PF00534 Glycosyl transferases group 1 BUM88_02445 PF01569 PAP2 superfamily BUM88_02450 PF04384 Iron-sulphur cluster assembly BUM88_02455 PF00334 Nucleoside diphosphate kinase BUM88_02460 PF04055 Radical SAM superfamily BUM88_02470 PF13464 Domain of unknown function (DUF4115) BUM88_02475 PF04551 GcpE protein BUM88_02480 PF03129 Anticodon binding domain BUM88_02480 PF13393 Histidyl-tRNA synthetase BUM88_02490 PF13360 PQQ-like domain BUM88_02490 PF01011 PQQ enzyme repeat BUM88_02495 PF01926 50S ribosome-binding GTPase BUM88_02495 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BUM88_02510 PF00550 Phosphopantetheine attachment site BUM88_02515 PF00550 Phosphopantetheine attachment site BUM88_02525 PF00501 AMP-binding enzyme BUM88_02525 PF13193 AMP-binding enzyme C-terminal domain BUM88_02530 PF00535 Glycosyl transferase family 2 BUM88_02540 PF00221 Aromatic amino acid lyase BUM88_02560 PF04820 Tryptophan halogenase BUM88_02570 PF00109 Beta-ketoacyl synthase, N-terminal domain BUM88_02570 PF02801 Beta-ketoacyl synthase, C-terminal domain BUM88_02585 PF00109 Beta-ketoacyl synthase, N-terminal domain BUM88_02585 PF02801 Beta-ketoacyl synthase, C-terminal domain BUM88_02600 PF02556 Preprotein translocase subunit SecB BUM88_02605 PF00462 Glutaredoxin BUM88_02615 PF03193 RsgA GTPase BUM88_02620 PF00929 Exonuclease BUM88_02635 PF02321 Outer membrane efflux protein BUM88_02640 PF00005 ABC transporter BUM88_02640 PF02687 FtsX-like permease family BUM88_02640 PF12704 MacB-like periplasmic core domain BUM88_02645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BUM88_02660 PF00133 tRNA synthetases class I (I, L, M and V) BUM88_02660 PF09334 tRNA synthetases class I (M) BUM88_02660 PF13603 Leucyl-tRNA synthetase, Domain 2 BUM88_02660 PF08264 Anticodon-binding domain of tRNA BUM88_02665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BUM88_02665 PF00205 Thiamine pyrophosphate enzyme, central domain BUM88_02665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BUM88_02670 PF10369 Small subunit of acetolactate synthase BUM88_02675 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BUM88_02675 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BUM88_02680 PF00990 Diguanylate cyclase, GGDEF domain BUM88_02680 PF03707 Bacterial signalling protein N terminal repeat BUM88_02680 PF00563 EAL domain BUM88_02705 PF03144 Elongation factor Tu domain 2 BUM88_02705 PF00009 Elongation factor Tu GTP binding domain BUM88_02705 PF16658 Class II release factor RF3, C-terminal domain BUM88_02720 PF01026 TatD related DNase BUM88_02725 PF00330 Aconitase family (aconitate hydratase) BUM88_02725 PF00694 Aconitase C-terminal domain BUM88_02730 PF00899 ThiF family BUM88_02740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_02740 PF03466 LysR substrate binding domain BUM88_02755 PF01207 Dihydrouridine synthase (Dus) BUM88_02760 PF07690 Major Facilitator Superfamily BUM88_02770 PF00892 EamA-like transporter family BUM88_02775 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BUM88_02775 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BUM88_02780 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BUM88_02785 PF02233 NAD(P) transhydrogenase beta subunit BUM88_02790 PF00106 short chain dehydrogenase BUM88_02805 PF01261 Xylose isomerase-like TIM barrel BUM88_02810 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BUM88_02810 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BUM88_02815 PF00378 Enoyl-CoA hydratase/isomerase BUM88_02820 PF00512 His Kinase A (phospho-acceptor) domain BUM88_02820 PF00672 HAMP domain BUM88_02820 PF00072 Response regulator receiver domain BUM88_02820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BUM88_02820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_02820 PF01627 Hpt domain BUM88_02825 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_02835 PF05958 tRNA (Uracil-5-)-methyltransferase BUM88_02840 PF04607 Region found in RelA / SpoT proteins BUM88_02840 PF13291 ACT domain BUM88_02840 PF02824 TGS domain BUM88_02850 PF03819 MazG nucleotide pyrophosphohydrolase domain BUM88_02860 PF12627 Probable RNA and SrmB- binding site of polymerase A BUM88_02860 PF12626 Polymerase A arginine-rich C-terminus BUM88_02860 PF01743 Poly A polymerase head domain BUM88_02865 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BUM88_02870 PF02548 Ketopantoate hydroxymethyltransferase BUM88_02875 PF02569 Pantoate-beta-alanine ligase BUM88_02880 PF03668 P-loop ATPase protein family BUM88_02885 PF00381 PTS HPr component phosphorylation site BUM88_02895 PF13193 AMP-binding enzyme C-terminal domain BUM88_02895 PF00501 AMP-binding enzyme BUM88_02900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BUM88_02900 PF02824 TGS domain BUM88_02900 PF03129 Anticodon binding domain BUM88_02900 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BUM88_02905 PF05198 Translation initiation factor IF-3, N-terminal domain BUM88_02905 PF00707 Translation initiation factor IF-3, C-terminal domain BUM88_02915 PF00043 Glutathione S-transferase, C-terminal domain BUM88_02915 PF02798 Glutathione S-transferase, N-terminal domain BUM88_02920 PF09335 SNARE associated Golgi protein BUM88_02925 PF07690 Major Facilitator Superfamily BUM88_02930 PF01632 Ribosomal protein L35 BUM88_02935 PF00453 Ribosomal protein L20 BUM88_02955 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BUM88_02955 PF01409 tRNA synthetases class II core domain (F) BUM88_02960 PF03483 B3/4 domain BUM88_02960 PF01588 Putative tRNA binding domain BUM88_02960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BUM88_02960 PF03147 Ferredoxin-fold anticodon binding domain BUM88_02960 PF03484 tRNA synthetase B5 domain BUM88_02965 PF00216 Bacterial DNA-binding protein BUM88_02980 PF07497 Rho termination factor, RNA-binding domain BUM88_02980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BUM88_02980 PF07498 Rho termination factor, N-terminal domain BUM88_02985 PF00085 Thioredoxin BUM88_02990 PF02541 Ppx/GppA phosphatase family BUM88_02995 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BUM88_03000 PF11734 TilS substrate C-terminal domain BUM88_03000 PF01171 PP-loop family BUM88_03000 PF09179 TilS substrate binding domain BUM88_03005 PF03807 NADP oxidoreductase coenzyme F420-dependent BUM88_03005 PF14748 Pyrroline-5-carboxylate reductase dimerisation BUM88_03010 PF02325 YGGT family BUM88_03015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BUM88_03015 PF01367 5'-3' exonuclease, C-terminal SAM fold BUM88_03015 PF00476 DNA polymerase family A BUM88_03015 PF01612 3'-5' exonuclease BUM88_03035 PF00437 Type II/IV secretion system protein BUM88_03040 PF02566 OsmC-like protein BUM88_03045 PF01047 MarR family BUM88_03055 PF00795 Carbon-nitrogen hydrolase BUM88_03100 PF04552 Sigma-54, DNA binding domain BUM88_03100 PF00309 Sigma-54 factor, Activator interacting domain (AID) BUM88_03100 PF04963 Sigma-54 factor, core binding domain BUM88_03105 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BUM88_03110 PF01722 BolA-like protein BUM88_03115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BUM88_03120 PF01634 ATP phosphoribosyltransferase BUM88_03125 PF00815 Histidinol dehydrogenase BUM88_03130 PF00155 Aminotransferase class I and II BUM88_03135 PF00425 chorismate binding enzyme BUM88_03135 PF04715 Anthranilate synthase component I, N terminal region BUM88_03175 PF00293 NUDIX domain BUM88_03180 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_03185 PF00814 Glycoprotease family BUM88_03190 PF04445 Putative SAM-dependent methyltransferase BUM88_03200 PF00756 Putative esterase BUM88_03210 PF00834 Ribulose-phosphate 3 epimerase family BUM88_03225 PF07731 Multicopper oxidase BUM88_03225 PF00394 Multicopper oxidase BUM88_03225 PF07732 Multicopper oxidase BUM88_03240 PF00893 Small Multidrug Resistance protein BUM88_03245 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BUM88_03245 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BUM88_03250 PF01960 ArgJ family BUM88_03255 PF02445 Quinolinate synthetase A protein BUM88_03280 PF00962 Adenosine/AMP deaminase BUM88_03285 PF00107 Zinc-binding dehydrogenase BUM88_03285 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_03290 PF03466 LysR substrate binding domain BUM88_03295 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_03295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_03295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_03300 PF07690 Major Facilitator Superfamily BUM88_03305 PF02515 CoA-transferase family III BUM88_03310 PF17932 Tetracyclin repressor-like, C-terminal domain BUM88_03310 PF00440 Bacterial regulatory proteins, tetR family BUM88_03325 PF14537 Cytochrome c3 BUM88_03325 PF00890 FAD binding domain BUM88_03330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_03330 PF03466 LysR substrate binding domain BUM88_03340 PF07690 Major Facilitator Superfamily BUM88_03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_03350 PF03466 LysR substrate binding domain BUM88_03365 PF07687 Peptidase dimerisation domain BUM88_03365 PF01546 Peptidase family M20/M25/M40 BUM88_03370 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BUM88_03370 PF12833 Helix-turn-helix domain BUM88_03380 PF01810 LysE type translocator BUM88_03385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_03385 PF03466 LysR substrate binding domain BUM88_03395 PF01717 Cobalamin-independent synthase, Catalytic domain BUM88_03395 PF08267 Cobalamin-independent synthase, N-terminal domain BUM88_03400 PF01613 Flavin reductase like domain BUM88_03435 PF17074 Darcynin, domain of unknown function BUM88_03445 PF08892 YqcI/YcgG family BUM88_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_03450 PF03466 LysR substrate binding domain BUM88_03470 PF02567 Phenazine biosynthesis-like protein BUM88_03480 PF01042 Endoribonuclease L-PSP BUM88_03485 PF03466 LysR substrate binding domain BUM88_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_03490 PF00384 Molybdopterin oxidoreductase BUM88_03495 PF02634 FdhD/NarQ family BUM88_03500 PF01062 Bestrophin, RFP-TM, chloride channel BUM88_03505 PF00268 Ribonucleotide reductase, small chain BUM88_03515 PF03477 ATP cone domain BUM88_03515 PF00317 Ribonucleotide reductase, all-alpha domain BUM88_03515 PF02867 Ribonucleotide reductase, barrel domain BUM88_03525 PF00072 Response regulator receiver domain BUM88_03525 PF00486 Transcriptional regulatory protein, C terminal BUM88_03530 PF00512 His Kinase A (phospho-acceptor) domain BUM88_03530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_03530 PF00672 HAMP domain BUM88_03540 PF00990 Diguanylate cyclase, GGDEF domain BUM88_03545 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BUM88_03550 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BUM88_03555 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BUM88_03555 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BUM88_03565 PF10531 SLBB domain BUM88_03565 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BUM88_03565 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BUM88_03570 PF00384 Molybdopterin oxidoreductase BUM88_03570 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BUM88_03570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BUM88_03575 PF00146 NADH dehydrogenase BUM88_03580 PF12838 4Fe-4S dicluster domain BUM88_03585 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BUM88_03590 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BUM88_03595 PF00361 Proton-conducting membrane transporter BUM88_03595 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BUM88_03600 PF00361 Proton-conducting membrane transporter BUM88_03605 PF00361 Proton-conducting membrane transporter BUM88_03620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_03620 PF03466 LysR substrate binding domain BUM88_03625 PF00970 Oxidoreductase FAD-binding domain BUM88_03625 PF00175 Oxidoreductase NAD-binding domain BUM88_03640 PF05552 Conserved TM helix BUM88_03655 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_03660 PF13533 Biotin-lipoyl like BUM88_03690 PF09334 tRNA synthetases class I (M) BUM88_03690 PF01588 Putative tRNA binding domain BUM88_03700 PF10609 NUBPL iron-transfer P-loop NTPase BUM88_03705 PF01048 Phosphorylase superfamily BUM88_03720 PF00692 dUTPase BUM88_03755 PF01207 Dihydrouridine synthase (Dus) BUM88_03765 PF02978 Signal peptide binding domain BUM88_03765 PF02881 SRP54-type protein, helical bundle domain BUM88_03765 PF00448 SRP54-type protein, GTPase domain BUM88_03770 PF03309 Type III pantothenate kinase BUM88_03780 PF01925 Sulfite exporter TauE/SafE BUM88_03790 PF02463 RecF/RecN/SMC N terminal domain BUM88_03790 PF06470 SMC proteins Flexible Hinge Domain BUM88_03800 PF01653 NAD-dependent DNA ligase adenylation domain BUM88_03800 PF00533 BRCA1 C Terminus (BRCT) domain BUM88_03800 PF03120 NAD-dependent DNA ligase OB-fold domain BUM88_03800 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BUM88_03800 PF12826 Helix-hairpin-helix motif BUM88_03805 PF00210 Ferritin-like domain BUM88_03810 PF07690 Major Facilitator Superfamily BUM88_03815 PF00982 Glycosyltransferase family 20 BUM88_03820 PF02358 Trehalose-phosphatase BUM88_03825 PF08241 Methyltransferase domain BUM88_03825 PF12697 Alpha/beta hydrolase family BUM88_03830 PF06968 Biotin and Thiamin Synthesis associated domain BUM88_03830 PF04055 Radical SAM superfamily BUM88_03830 PF00202 Aminotransferase class-III BUM88_03835 PF00155 Aminotransferase class I and II BUM88_03850 PF00849 RNA pseudouridylate synthase BUM88_03850 PF01479 S4 domain BUM88_03855 PF04079 Segregation and condensation complex subunit ScpB BUM88_03860 PF02616 Segregation and condensation protein ScpA BUM88_03865 PF01300 Telomere recombination BUM88_03870 PF04315 Elongation factor P hydroxylase BUM88_03875 PF02620 Large ribosomal RNA subunit accumulation protein YceD BUM88_03880 PF01783 Ribosomal L32p protein family BUM88_03885 PF00698 Acyl transferase domain BUM88_03895 PF00550 Phosphopantetheine attachment site BUM88_03900 PF01476 LysM domain BUM88_03900 PF04972 BON domain BUM88_03905 PF03070 TENA/THI-4/PQQC family BUM88_03905 PF02581 Thiamine monophosphate synthase BUM88_03905 PF08543 Phosphomethylpyrimidine kinase BUM88_03910 PF13419 Haloacid dehalogenase-like hydrolase BUM88_03915 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BUM88_03930 PF02261 Aspartate decarboxylase BUM88_03935 PF01195 Peptidyl-tRNA hydrolase BUM88_03940 PF01386 Ribosomal L25p family BUM88_03945 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BUM88_03945 PF14572 Phosphoribosyl synthetase-associated domain BUM88_03965 PF00288 GHMP kinases N terminal domain BUM88_03965 PF08544 GHMP kinases C terminal BUM88_03970 PF03550 Outer membrane lipoprotein LolB BUM88_03980 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BUM88_03980 PF01488 Shikimate / quinate 5-dehydrogenase BUM88_03980 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BUM88_03985 PF08275 DNA primase catalytic core, N-terminal domain BUM88_03985 PF10410 DnaB-helicase binding domain of primase BUM88_03985 PF01807 CHC2 zinc finger BUM88_03985 PF08278 DNA primase DnaG DnaB-binding BUM88_03990 PF13525 Outer membrane lipoprotein BUM88_03995 PF01479 S4 domain BUM88_03995 PF00849 RNA pseudouridylate synthase BUM88_04005 PF03358 NADPH-dependent FMN reductase BUM88_04010 PF01668 SmpB protein BUM88_04015 PF01467 Cytidylyltransferase-like BUM88_04020 PF00037 4Fe-4S binding domain BUM88_04050 PF00795 Carbon-nitrogen hydrolase BUM88_04050 PF02540 NAD synthase BUM88_04065 PF02801 Beta-ketoacyl synthase, C-terminal domain BUM88_04065 PF00109 Beta-ketoacyl synthase, N-terminal domain BUM88_04075 PF00164 Ribosomal protein S12/S23 BUM88_04080 PF00177 Ribosomal protein S7p/S5e BUM88_04085 PF00009 Elongation factor Tu GTP binding domain BUM88_04085 PF03764 Elongation factor G, domain IV BUM88_04085 PF14492 Elongation Factor G, domain II BUM88_04085 PF00679 Elongation factor G C-terminus BUM88_04085 PF03144 Elongation factor Tu domain 2 BUM88_04090 PF03143 Elongation factor Tu C-terminal domain BUM88_04090 PF03144 Elongation factor Tu domain 2 BUM88_04090 PF00009 Elongation factor Tu GTP binding domain BUM88_04105 PF00583 Acetyltransferase (GNAT) family BUM88_04110 PF04377 Arginine-tRNA-protein transferase, C terminus BUM88_04110 PF04376 Arginine-tRNA-protein transferase, N terminus BUM88_04115 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BUM88_04125 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_04130 PF09397 Ftsk gamma domain BUM88_04130 PF01580 FtsK/SpoIIIE family BUM88_04130 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BUM88_04130 PF17854 FtsK alpha domain BUM88_04135 PF01810 LysE type translocator BUM88_04150 PF03776 Septum formation topological specificity factor MinE BUM88_04155 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BUM88_04160 PF03775 Septum formation inhibitor MinC, C-terminal domain BUM88_04170 PF01553 Acyltransferase BUM88_04175 PF13488 Glycine zipper BUM88_04175 PF00691 OmpA family BUM88_04180 PF00580 UvrD/REP helicase N-terminal domain BUM88_04180 PF13361 UvrD-like helicase C-terminal domain BUM88_04185 PF00692 dUTPase BUM88_04190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BUM88_04190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BUM88_04190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BUM88_04190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BUM88_04195 PF00696 Amino acid kinase family BUM88_04205 PF13230 Glutamine amidotransferases class-II BUM88_04210 PF01814 Hemerythrin HHE cation binding domain BUM88_04225 PF03658 RnfH family Ubiquitin BUM88_04230 PF04355 SmpA / OmlA family BUM88_04235 PF01475 Ferric uptake regulator family BUM88_04240 PF00437 Type II/IV secretion system protein BUM88_04245 PF00437 Type II/IV secretion system protein BUM88_04250 PF01168 Alanine racemase, N-terminal domain BUM88_04260 PF12320 Type 5 capsule protein repressor C-terminal domain BUM88_04260 PF00149 Calcineurin-like phosphoesterase BUM88_04280 PF01370 NAD dependent epimerase/dehydratase family BUM88_04280 PF08338 Domain of unknown function (DUF1731) BUM88_04285 PF01266 FAD dependent oxidoreductase BUM88_04290 PF00490 Delta-aminolevulinic acid dehydratase BUM88_04295 PF03061 Thioesterase superfamily BUM88_04300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BUM88_04300 PF00529 HlyD membrane-fusion protein of T1SS BUM88_04305 PF07690 Major Facilitator Superfamily BUM88_04355 PF00083 Sugar (and other) transporter BUM88_04360 PF00701 Dihydrodipicolinate synthetase family BUM88_04370 PF04542 Sigma-70 region 2 BUM88_04370 PF08281 Sigma-70, region 4 BUM88_04400 PF01126 Heme oxygenase BUM88_04425 PF13520 Amino acid permease BUM88_04430 PF02574 Homocysteine S-methyltransferase BUM88_04440 PF06039 Malate:quinone oxidoreductase (Mqo) BUM88_04445 PF05199 GMC oxidoreductase BUM88_04445 PF00732 GMC oxidoreductase BUM88_04450 PF00171 Aldehyde dehydrogenase family BUM88_04455 PF00440 Bacterial regulatory proteins, tetR family BUM88_04455 PF13977 BetI-type transcriptional repressor, C-terminal BUM88_04460 PF02028 BCCT, betaine/carnitine/choline family transporter BUM88_04465 PF02028 BCCT, betaine/carnitine/choline family transporter BUM88_04475 PF03061 Thioesterase superfamily BUM88_04490 PF00375 Sodium:dicarboxylate symporter family BUM88_04495 PF07152 YaeQ protein BUM88_04500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BUM88_04505 PF14883 Hypothetical glycosyl hydrolase family 13 BUM88_04505 PF01522 Polysaccharide deacetylase BUM88_04510 PF00535 Glycosyl transferase family 2 BUM88_04520 PF00440 Bacterial regulatory proteins, tetR family BUM88_04530 PF00378 Enoyl-CoA hydratase/isomerase BUM88_04550 PF01614 Bacterial transcriptional regulator BUM88_04550 PF09339 IclR helix-turn-helix domain BUM88_04555 PF00355 Rieske [2Fe-2S] domain BUM88_04565 PF00355 Rieske [2Fe-2S] domain BUM88_04575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BUM88_04580 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_04580 PF14759 Reductase C-terminal BUM88_04585 PF07690 Major Facilitator Superfamily BUM88_04595 PF12697 Alpha/beta hydrolase family BUM88_04605 PF03447 Homoserine dehydrogenase, NAD binding domain BUM88_04605 PF01958 Domain of unknown function DUF108 BUM88_04610 PF00171 Aldehyde dehydrogenase family BUM88_04615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BUM88_04615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BUM88_04615 PF00205 Thiamine pyrophosphate enzyme, central domain BUM88_04625 PF07690 Major Facilitator Superfamily BUM88_04630 PF01327 Polypeptide deformylase BUM88_04635 PF04960 Glutaminase BUM88_04640 PF07883 Cupin domain BUM88_04640 PF12833 Helix-turn-helix domain BUM88_04645 PF07690 Major Facilitator Superfamily BUM88_04655 PF01263 Aldose 1-epimerase BUM88_04665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_04665 PF03466 LysR substrate binding domain BUM88_04675 PF07690 Major Facilitator Superfamily BUM88_04680 PF00456 Transketolase, thiamine diphosphate binding domain BUM88_04685 PF02779 Transketolase, pyrimidine binding domain BUM88_04685 PF02780 Transketolase, C-terminal domain BUM88_04690 PF02574 Homocysteine S-methyltransferase BUM88_04690 PF02310 B12 binding domain BUM88_04690 PF00809 Pterin binding enzyme BUM88_04690 PF02607 B12 binding domain BUM88_04690 PF02965 Vitamin B12 dependent methionine synthase, activation domain BUM88_04695 PF01384 Phosphate transporter family BUM88_04700 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_04715 PF03781 Sulfatase-modifying factor enzyme 1 BUM88_04720 PF00884 Sulfatase BUM88_04730 PF01521 Iron-sulphur cluster biosynthesis BUM88_04730 PF01106 NifU-like domain BUM88_04735 PF00593 TonB dependent receptor BUM88_04735 PF07715 TonB-dependent Receptor Plug Domain BUM88_04745 PF00561 alpha/beta hydrolase fold BUM88_04750 PF00484 Carbonic anhydrase BUM88_04755 PF13472 GDSL-like Lipase/Acylhydrolase family BUM88_04760 PF00005 ABC transporter BUM88_04770 PF01694 Rhomboid family BUM88_04775 PF00912 Transglycosylase BUM88_04780 PF13089 Polyphosphate kinase N-terminal domain BUM88_04780 PF17941 Polyphosphate kinase C-terminal domain 1 BUM88_04780 PF13090 Polyphosphate kinase C-terminal domain 2 BUM88_04780 PF02503 Polyphosphate kinase middle domain BUM88_04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_04795 PF03466 LysR substrate binding domain BUM88_04800 PF00561 alpha/beta hydrolase fold BUM88_04805 PF18113 Rubredoxin binding C-terminal domain BUM88_04805 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_04810 PF00301 Rubredoxin BUM88_04825 PF00152 tRNA synthetases class II (D, K and N) BUM88_04825 PF01336 OB-fold nucleic acid binding domain BUM88_04830 PF14052 Capsule assembly protein Wzi BUM88_04840 PF01507 Phosphoadenosine phosphosulfate reductase family BUM88_04845 PF00009 Elongation factor Tu GTP binding domain BUM88_04860 PF03600 Citrate transporter BUM88_04865 PF01595 Cyclin M transmembrane N-terminal domain BUM88_04865 PF03471 Transporter associated domain BUM88_04865 PF00571 CBS domain BUM88_04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_04870 PF03466 LysR substrate binding domain BUM88_04875 PF00463 Isocitrate lyase family BUM88_04880 PF04170 NlpE N-terminal domain BUM88_04880 PF17185 NlpE C-terminal OB domain BUM88_04890 PF01774 UreD urease accessory protein BUM88_04895 PF00547 Urease, gamma subunit BUM88_04900 PF00699 Urease beta subunit BUM88_04905 PF00449 Urease alpha-subunit, N-terminal domain BUM88_04905 PF01979 Amidohydrolase family BUM88_04910 PF05194 UreE urease accessory protein, C-terminal domain BUM88_04910 PF02814 UreE urease accessory protein, N-terminal domain BUM88_04915 PF01730 UreF BUM88_04920 PF02492 CobW/HypB/UreG, nucleotide-binding domain BUM88_04935 PF03717 Penicillin-binding Protein dimerisation domain BUM88_04935 PF00905 Penicillin binding protein transpeptidase domain BUM88_04950 PF05191 Adenylate kinase, active site lid BUM88_04960 PF00730 HhH-GPD superfamily base excision DNA repair protein BUM88_04960 PF00633 Helix-hairpin-helix motif BUM88_04960 PF10576 Iron-sulfur binding domain of endonuclease III BUM88_04965 PF04060 Putative Fe-S cluster BUM88_04970 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BUM88_04970 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BUM88_04980 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BUM88_04985 PF02590 Predicted SPOUT methyltransferase BUM88_04990 PF00004 ATPase family associated with various cellular activities (AAA) BUM88_04990 PF05362 Lon protease (S16) C-terminal proteolytic domain BUM88_04990 PF02190 ATP-dependent protease La (LON) substrate-binding domain BUM88_04995 PF01812 5-formyltetrahydrofolate cyclo-ligase family BUM88_05035 PF00557 Metallopeptidase family M24 BUM88_05035 PF05195 Aminopeptidase P, N-terminal domain BUM88_05040 PF01494 FAD binding domain BUM88_05045 PF01494 FAD binding domain BUM88_05055 PF13411 MerR HTH family regulatory protein BUM88_05065 PF01810 LysE type translocator BUM88_05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_05070 PF03466 LysR substrate binding domain BUM88_05080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BUM88_05085 PF02021 Uncharacterised protein family UPF0102 BUM88_05090 PF04972 BON domain BUM88_05100 PF09297 NADH pyrophosphatase zinc ribbon domain BUM88_05100 PF00293 NUDIX domain BUM88_05110 PF00929 Exonuclease BUM88_05115 PF01464 Transglycosylase SLT domain BUM88_05115 PF01476 LysM domain BUM88_05115 PF01476 LysM domain BUM88_05115 PF01464 Transglycosylase SLT domain BUM88_05120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BUM88_05125 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_05130 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_05130 PF12911 N-terminal TM domain of oligopeptide transport permease C BUM88_05135 PF00005 ABC transporter BUM88_05135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BUM88_05140 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_05140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BUM88_05145 PF07715 TonB-dependent Receptor Plug Domain BUM88_05145 PF00593 TonB dependent receptor BUM88_05155 PF00929 Exonuclease BUM88_05160 PF01979 Amidohydrolase family BUM88_05165 PF00563 EAL domain BUM88_05165 PF01590 GAF domain BUM88_05165 PF00360 Phytochrome region BUM88_05165 PF00990 Diguanylate cyclase, GGDEF domain BUM88_05170 PF00764 Arginosuccinate synthase BUM88_05180 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_05180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BUM88_05190 PF01494 FAD binding domain BUM88_05205 PF05987 Bacterial protein of unknown function (DUF898) BUM88_05225 PF03783 Curli production assembly/transport component CsgG BUM88_05235 PF05643 Putative bacterial lipoprotein (DUF799) BUM88_05245 PF00324 Amino acid permease BUM88_05255 PF01266 FAD dependent oxidoreductase BUM88_05260 PF00324 Amino acid permease BUM88_05270 PF00392 Bacterial regulatory proteins, gntR family BUM88_05270 PF07729 FCD domain BUM88_05280 PF00171 Aldehyde dehydrogenase family BUM88_05295 PF00202 Aminotransferase class-III BUM88_05300 PF04958 Arginine N-succinyltransferase beta subunit BUM88_05305 PF00324 Amino acid permease BUM88_05330 PF00171 Aldehyde dehydrogenase family BUM88_05335 PF12833 Helix-turn-helix domain BUM88_05335 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BUM88_05340 PF00892 EamA-like transporter family BUM88_05345 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BUM88_05345 PF08666 SAF domain BUM88_05350 PF07690 Major Facilitator Superfamily BUM88_05355 PF13378 Enolase C-terminal domain-like BUM88_05360 PF00701 Dihydrodipicolinate synthetase family BUM88_05365 PF00171 Aldehyde dehydrogenase family BUM88_05370 PF00392 Bacterial regulatory proteins, gntR family BUM88_05370 PF07729 FCD domain BUM88_05390 PF03573 outer membrane porin, OprD family BUM88_05395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_05395 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_05395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_05405 PF00171 Aldehyde dehydrogenase family BUM88_05410 PF00378 Enoyl-CoA hydratase/isomerase BUM88_05415 PF07690 Major Facilitator Superfamily BUM88_05430 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_05430 PF00175 Oxidoreductase NAD-binding domain BUM88_05435 PF00355 Rieske [2Fe-2S] domain BUM88_05445 PF03781 Sulfatase-modifying factor enzyme 1 BUM88_05450 PF00884 Sulfatase BUM88_05455 PF07690 Major Facilitator Superfamily BUM88_05460 PF03573 outer membrane porin, OprD family BUM88_05465 PF18381 YcaO cyclodehydratase C-terminal domain BUM88_05465 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding BUM88_05470 PF05199 GMC oxidoreductase BUM88_05475 PF07859 alpha/beta hydrolase fold BUM88_05480 PF00106 short chain dehydrogenase BUM88_05485 PF00743 Flavin-binding monooxygenase-like BUM88_05490 PF12833 Helix-turn-helix domain BUM88_05490 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BUM88_05495 PF05683 Fumarase C-terminus BUM88_05500 PF05681 Fumarate hydratase (Fumerase) BUM88_05505 PF07690 Major Facilitator Superfamily BUM88_05510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_05510 PF03466 LysR substrate binding domain BUM88_05515 PF04072 Leucine carboxyl methyltransferase BUM88_05520 PF00743 Flavin-binding monooxygenase-like BUM88_05525 PF00106 short chain dehydrogenase BUM88_05535 PF00440 Bacterial regulatory proteins, tetR family BUM88_05535 PF17932 Tetracyclin repressor-like, C-terminal domain BUM88_05540 PF02678 Pirin BUM88_05540 PF17954 Quercetinase C-terminal cupin domain BUM88_05550 PF00860 Permease family BUM88_05555 PF00962 Adenosine/AMP deaminase BUM88_05560 PF01292 Prokaryotic cytochrome b561 BUM88_05570 PF01351 Ribonuclease HII BUM88_05575 PF02599 Global regulator protein family BUM88_05580 PF13840 ACT domain BUM88_05580 PF01842 ACT domain BUM88_05580 PF00696 Amino acid kinase family BUM88_05585 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BUM88_05585 PF01411 tRNA synthetases class II (A) BUM88_05585 PF02272 DHHA1 domain BUM88_05590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BUM88_05590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BUM88_05600 PF13393 Histidyl-tRNA synthetase BUM88_05605 PF00709 Adenylosuccinate synthetase BUM88_05620 PF00248 Aldo/keto reductase family BUM88_05625 PF13545 Crp-like helix-turn-helix domain BUM88_05625 PF00027 Cyclic nucleotide-binding domain BUM88_05630 PF02566 OsmC-like protein BUM88_05645 PF00004 ATPase family associated with various cellular activities (AAA) BUM88_05645 PF10431 C-terminal, D2-small domain, of ClpB protein BUM88_05645 PF02861 Clp amino terminal domain, pathogenicity island component BUM88_05645 PF17871 AAA lid domain BUM88_05645 PF07724 AAA domain (Cdc48 subfamily) BUM88_05660 PF02926 THUMP domain BUM88_05660 PF10672 S-adenosylmethionine-dependent methyltransferase BUM88_05660 PF01170 Putative RNA methylase family UPF0020 BUM88_05670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BUM88_05670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BUM88_05675 PF01979 Amidohydrolase family BUM88_05680 PF00691 OmpA family BUM88_05680 PF13488 Glycine zipper BUM88_05690 PF00043 Glutathione S-transferase, C-terminal domain BUM88_05690 PF13417 Glutathione S-transferase, N-terminal domain BUM88_05700 PF02390 Putative methyltransferase BUM88_05710 PF02798 Glutathione S-transferase, N-terminal domain BUM88_05710 PF00043 Glutathione S-transferase, C-terminal domain BUM88_05720 PF13192 Thioredoxin domain BUM88_05720 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_05730 PF05175 Methyltransferase small domain BUM88_05740 PF00487 Fatty acid desaturase BUM88_05750 PF00578 AhpC/TSA family BUM88_05750 PF10417 C-terminal domain of 1-Cys peroxiredoxin BUM88_05755 PF00270 DEAD/DEAH box helicase BUM88_05755 PF00271 Helicase conserved C-terminal domain BUM88_05755 PF11898 Domain of unknown function (DUF3418) BUM88_05755 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BUM88_05755 PF04408 Helicase associated domain (HA2) BUM88_05760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BUM88_05760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BUM88_05770 PF07690 Major Facilitator Superfamily BUM88_05775 PF03594 Benzoate membrane transport protein BUM88_05780 PF00106 short chain dehydrogenase BUM88_05785 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_05785 PF00175 Oxidoreductase NAD-binding domain BUM88_05785 PF00970 Oxidoreductase FAD-binding domain BUM88_05795 PF00355 Rieske [2Fe-2S] domain BUM88_05795 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BUM88_05805 PF03466 LysR substrate binding domain BUM88_05805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_05815 PF00403 Heavy-metal-associated domain BUM88_05820 PF09278 MerR, DNA binding BUM88_05820 PF00376 MerR family regulatory protein BUM88_05855 PF02601 Exonuclease VII, large subunit BUM88_05855 PF13742 OB-fold nucleic acid binding domain BUM88_05890 PF01810 LysE type translocator BUM88_05895 PF03279 Bacterial lipid A biosynthesis acyltransferase BUM88_05900 PF00313 'Cold-shock' DNA-binding domain BUM88_05910 PF03807 NADP oxidoreductase coenzyme F420-dependent BUM88_05910 PF14748 Pyrroline-5-carboxylate reductase dimerisation BUM88_05920 PF01037 Lrp/AsnC ligand binding domain BUM88_05925 PF13419 Haloacid dehalogenase-like hydrolase BUM88_05930 PF08241 Methyltransferase domain BUM88_05940 PF01202 Shikimate kinase BUM88_06000 PF00924 Mechanosensitive ion channel BUM88_06015 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_06015 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BUM88_06030 PF07690 Major Facilitator Superfamily BUM88_06035 PF01638 HxlR-like helix-turn-helix BUM88_06075 PF01406 tRNA synthetases class I (C) catalytic domain BUM88_06075 PF09190 DALR domain BUM88_06080 PF00571 CBS domain BUM88_06080 PF01380 SIS domain BUM88_06095 PF03968 OstA-like protein BUM88_06100 PF00005 ABC transporter BUM88_06100 PF12399 Branched-chain amino acid ATP-binding cassette transporter BUM88_06105 PF02321 Outer membrane efflux protein BUM88_06110 PF00664 ABC transporter transmembrane region BUM88_06110 PF00005 ABC transporter BUM88_06110 PF03412 Peptidase C39 family BUM88_06115 PF13533 Biotin-lipoyl like BUM88_06120 PF01205 Uncharacterized protein family UPF0029 BUM88_06125 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_06135 PF01596 O-methyltransferase BUM88_06150 PF00037 4Fe-4S binding domain BUM88_06150 PF11953 Domain of unknown function (DUF3470) BUM88_06160 PF00488 MutS domain V BUM88_06160 PF05190 MutS family domain IV BUM88_06160 PF01624 MutS domain I BUM88_06160 PF05192 MutS domain III BUM88_06160 PF05188 MutS domain II BUM88_06165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_06165 PF03466 LysR substrate binding domain BUM88_06175 PF00171 Aldehyde dehydrogenase family BUM88_06175 PF01575 MaoC like domain BUM88_06180 PF05138 Phenylacetic acid catabolic protein BUM88_06185 PF06243 Phenylacetic acid degradation B BUM88_06190 PF05138 Phenylacetic acid catabolic protein BUM88_06195 PF01883 Iron-sulfur cluster assembly protein BUM88_06200 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_06200 PF00970 Oxidoreductase FAD-binding domain BUM88_06200 PF00175 Oxidoreductase NAD-binding domain BUM88_06205 PF00378 Enoyl-CoA hydratase/isomerase BUM88_06210 PF00378 Enoyl-CoA hydratase/isomerase BUM88_06215 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BUM88_06215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BUM88_06215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BUM88_06220 PF00108 Thiolase, N-terminal domain BUM88_06220 PF02803 Thiolase, C-terminal domain BUM88_06225 PF00501 AMP-binding enzyme BUM88_06225 PF14535 AMP-binding enzyme C-terminal domain BUM88_06230 PF07848 PaaX-like protein BUM88_06230 PF08223 PaaX-like protein C-terminal domain BUM88_06235 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_06240 PF03061 Thioesterase superfamily BUM88_06265 PF00202 Aminotransferase class-III BUM88_06270 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BUM88_06270 PF12833 Helix-turn-helix domain BUM88_06280 PF01636 Phosphotransferase enzyme family BUM88_06285 PF13520 Amino acid permease BUM88_06355 PF03466 LysR substrate binding domain BUM88_06355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_06360 PF01979 Amidohydrolase family BUM88_06375 PF00593 TonB dependent receptor BUM88_06375 PF07715 TonB-dependent Receptor Plug Domain BUM88_06380 PF16220 Domain of unknown function (DUF4880) BUM88_06380 PF04773 FecR protein BUM88_06390 PF03707 Bacterial signalling protein N terminal repeat BUM88_06390 PF00990 Diguanylate cyclase, GGDEF domain BUM88_06390 PF00563 EAL domain BUM88_06395 PF07681 DoxX BUM88_06400 PF03797 Autotransporter beta-domain BUM88_06400 PF00082 Subtilase family BUM88_06400 PF12951 Passenger-associated-transport-repeat BUM88_06405 PF07859 alpha/beta hydrolase fold BUM88_06410 PF00561 alpha/beta hydrolase fold BUM88_06420 PF00440 Bacterial regulatory proteins, tetR family BUM88_06425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_06425 PF03466 LysR substrate binding domain BUM88_06430 PF00144 Beta-lactamase BUM88_06435 PF07690 Major Facilitator Superfamily BUM88_06440 PF00293 NUDIX domain BUM88_06460 PF00440 Bacterial regulatory proteins, tetR family BUM88_06460 PF14278 Transcriptional regulator C-terminal region BUM88_06510 PF01566 Natural resistance-associated macrophage protein BUM88_06515 PF03746 LamB/YcsF family BUM88_06520 PF07286 Protein of unknown function (DUF1445) BUM88_06530 PF00289 Biotin carboxylase, N-terminal domain BUM88_06530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BUM88_06530 PF00364 Biotin-requiring enzyme BUM88_06530 PF02785 Biotin carboxylase C-terminal domain BUM88_06535 PF00654 Voltage gated chloride channel BUM88_06600 PF00892 EamA-like transporter family BUM88_06605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BUM88_06605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BUM88_06620 PF02785 Biotin carboxylase C-terminal domain BUM88_06620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BUM88_06620 PF00289 Biotin carboxylase, N-terminal domain BUM88_06625 PF02525 Flavodoxin-like fold BUM88_06630 PF01638 HxlR-like helix-turn-helix BUM88_06640 PF01402 Ribbon-helix-helix protein, copG family BUM88_06640 PF08753 NikR C terminal nickel binding domain BUM88_06645 PF01425 Amidase BUM88_06650 PF00497 Bacterial extracellular solute-binding proteins, family 3 BUM88_06655 PF00005 ABC transporter BUM88_06670 PF07690 Major Facilitator Superfamily BUM88_06675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_06675 PF03466 LysR substrate binding domain BUM88_06785 PF00691 OmpA family BUM88_06785 PF18393 MotY N-terminal domain BUM88_06795 PF00004 ATPase family associated with various cellular activities (AAA) BUM88_06795 PF07724 AAA domain (Cdc48 subfamily) BUM88_06795 PF17871 AAA lid domain BUM88_06795 PF10431 C-terminal, D2-small domain, of ClpB protein BUM88_06825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_06830 PF12796 Ankyrin repeats (3 copies) BUM88_06835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BUM88_06840 PF07690 Major Facilitator Superfamily BUM88_06855 PF00155 Aminotransferase class I and II BUM88_06855 PF00392 Bacterial regulatory proteins, gntR family BUM88_06860 PF02677 Epoxyqueuosine reductase QueH BUM88_06870 PF09278 MerR, DNA binding BUM88_06870 PF00376 MerR family regulatory protein BUM88_06885 PF03315 Serine dehydratase beta chain BUM88_06885 PF03313 Serine dehydratase alpha chain BUM88_06900 PF00300 Histidine phosphatase superfamily (branch 1) BUM88_06930 PF01614 Bacterial transcriptional regulator BUM88_06930 PF09339 IclR helix-turn-helix domain BUM88_06940 PF00199 Catalase BUM88_06945 PF01292 Prokaryotic cytochrome b561 BUM88_06950 PF01425 Amidase BUM88_06960 PF00355 Rieske [2Fe-2S] domain BUM88_06960 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BUM88_06970 PF00175 Oxidoreductase NAD-binding domain BUM88_06970 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_06975 PF07690 Major Facilitator Superfamily BUM88_06990 PF01613 Flavin reductase like domain BUM88_06995 PF07690 Major Facilitator Superfamily BUM88_07005 PF00881 Nitroreductase family BUM88_07010 PF03466 LysR substrate binding domain BUM88_07010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07015 PF02627 Carboxymuconolactone decarboxylase family BUM88_07020 PF09339 IclR helix-turn-helix domain BUM88_07020 PF01614 Bacterial transcriptional regulator BUM88_07025 PF01494 FAD binding domain BUM88_07030 PF07690 Major Facilitator Superfamily BUM88_07035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_07035 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_07035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_07040 PF02515 CoA-transferase family III BUM88_07045 PF09339 IclR helix-turn-helix domain BUM88_07050 PF00378 Enoyl-CoA hydratase/isomerase BUM88_07055 PF03060 Nitronate monooxygenase BUM88_07060 PF07690 Major Facilitator Superfamily BUM88_07065 PF09339 IclR helix-turn-helix domain BUM88_07070 PF00108 Thiolase, N-terminal domain BUM88_07070 PF02803 Thiolase, C-terminal domain BUM88_07085 PF00378 Enoyl-CoA hydratase/isomerase BUM88_07090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_07090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_07090 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_07095 PF07690 Major Facilitator Superfamily BUM88_07100 PF07690 Major Facilitator Superfamily BUM88_07105 PF01144 Coenzyme A transferase BUM88_07110 PF01144 Coenzyme A transferase BUM88_07120 PF07690 Major Facilitator Superfamily BUM88_07130 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_07130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_07130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_07130 PF12806 Acetyl-CoA dehydrogenase C-terminal like BUM88_07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07145 PF03466 LysR substrate binding domain BUM88_07150 PF00682 HMGL-like BUM88_07155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BUM88_07155 PF00364 Biotin-requiring enzyme BUM88_07155 PF02785 Biotin carboxylase C-terminal domain BUM88_07155 PF00289 Biotin carboxylase, N-terminal domain BUM88_07160 PF00378 Enoyl-CoA hydratase/isomerase BUM88_07165 PF01039 Carboxyl transferase domain BUM88_07170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_07170 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_07170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_07175 PF00440 Bacterial regulatory proteins, tetR family BUM88_07180 PF00501 AMP-binding enzyme BUM88_07180 PF13193 AMP-binding enzyme C-terminal domain BUM88_07185 PF13649 Methyltransferase domain BUM88_07195 PF07690 Major Facilitator Superfamily BUM88_07210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07210 PF03466 LysR substrate binding domain BUM88_07250 PF00199 Catalase BUM88_07250 PF06628 Catalase-related immune-responsive BUM88_07250 PF18011 C-terminal domain found in long catalases BUM88_07275 PF00717 Peptidase S24-like BUM88_07285 PF13404 AsnC-type helix-turn-helix domain BUM88_07285 PF01037 Lrp/AsnC ligand binding domain BUM88_07295 PF00512 His Kinase A (phospho-acceptor) domain BUM88_07295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_07295 PF00072 Response regulator receiver domain BUM88_07295 PF09308 LuxQ, periplasmic BUM88_07300 PF00072 Response regulator receiver domain BUM88_07305 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BUM88_07315 PF03466 LysR substrate binding domain BUM88_07315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07320 PF07690 Major Facilitator Superfamily BUM88_07335 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_07340 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_07345 PF00005 ABC transporter BUM88_07350 PF00497 Bacterial extracellular solute-binding proteins, family 3 BUM88_07355 PF00497 Bacterial extracellular solute-binding proteins, family 3 BUM88_07365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07365 PF03466 LysR substrate binding domain BUM88_07370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BUM88_07370 PF01411 tRNA synthetases class II (A) BUM88_07370 PF02272 DHHA1 domain BUM88_07375 PF01810 LysE type translocator BUM88_07380 PF00266 Aminotransferase class-V BUM88_07390 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_07395 PF00581 Rhodanese-like domain BUM88_07415 PF02798 Glutathione S-transferase, N-terminal domain BUM88_07420 PF02798 Glutathione S-transferase, N-terminal domain BUM88_07420 PF14834 Glutathione S-transferase, C-terminal domain BUM88_07425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07425 PF03466 LysR substrate binding domain BUM88_07430 PF03788 LrgA family BUM88_07435 PF04172 LrgB-like family BUM88_07440 PF00155 Aminotransferase class I and II BUM88_07440 PF00392 Bacterial regulatory proteins, gntR family BUM88_07455 PF02311 AraC-like ligand binding domain BUM88_07455 PF12833 Helix-turn-helix domain BUM88_07460 PF01810 LysE type translocator BUM88_07470 PF16957 Malonate decarboxylase, alpha subunit, transporter BUM88_07480 PF06857 Malonate decarboxylase delta subunit (MdcD) BUM88_07485 PF01039 Carboxyl transferase domain BUM88_07495 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BUM88_07500 PF00698 Acyl transferase domain BUM88_07515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07515 PF03466 LysR substrate binding domain BUM88_07520 PF00392 Bacterial regulatory proteins, gntR family BUM88_07520 PF00155 Aminotransferase class I and II BUM88_07530 PF02322 Cytochrome bd terminal oxidase subunit II BUM88_07535 PF01654 Cytochrome bd terminal oxidase subunit I BUM88_07550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_07550 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_07550 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BUM88_07555 PF00296 Luciferase-like monooxygenase BUM88_07560 PF00083 Sugar (and other) transporter BUM88_07570 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BUM88_07575 PF00005 ABC transporter BUM88_07580 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_07585 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BUM88_07590 PF01177 Asp/Glu/Hydantoin racemase BUM88_07595 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BUM88_07605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07605 PF03466 LysR substrate binding domain BUM88_07615 PF01979 Amidohydrolase family BUM88_07615 PF13382 Adenine deaminase C-terminal domain BUM88_07625 PF03960 ArsC family BUM88_07630 PF01022 Bacterial regulatory protein, arsR family BUM88_07640 PF01758 Sodium Bile acid symporter family BUM88_07645 PF03358 NADPH-dependent FMN reductase BUM88_07650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_07650 PF03466 LysR substrate binding domain BUM88_07665 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_07665 PF13192 Thioredoxin domain BUM88_07680 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_07685 PF00588 SpoU rRNA Methylase family BUM88_07690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BUM88_07690 PF07733 Bacterial DNA polymerase III alpha NTPase domain BUM88_07690 PF14579 Helix-hairpin-helix motif BUM88_07690 PF01336 OB-fold nucleic acid binding domain BUM88_07690 PF02811 PHP domain BUM88_07695 PF00710 Asparaginase, N-terminal BUM88_07695 PF17763 Glutaminase/Asparaginase C-terminal domain BUM88_07700 PF00375 Sodium:dicarboxylate symporter family BUM88_07705 PF00155 Aminotransferase class I and II BUM88_07710 PF01641 SelR domain BUM88_07715 PF00255 Glutathione peroxidase BUM88_07720 PF12833 Helix-turn-helix domain BUM88_07720 PF02311 AraC-like ligand binding domain BUM88_07730 PF00155 Aminotransferase class I and II BUM88_07735 PF01966 HD domain BUM88_07735 PF01909 Nucleotidyltransferase domain BUM88_07735 PF08335 GlnD PII-uridylyltransferase BUM88_07740 PF02222 ATP-grasp domain BUM88_07750 PF05437 Branched-chain amino acid transport protein (AzlD) BUM88_07755 PF03591 AzlC protein BUM88_07780 PF06071 Protein of unknown function (DUF933) BUM88_07780 PF01926 50S ribosome-binding GTPase BUM88_07785 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_07790 PF09383 NIL domain BUM88_07790 PF00005 ABC transporter BUM88_07795 PF03180 NLPA lipoprotein BUM88_07800 PF03180 NLPA lipoprotein BUM88_07805 PF00296 Luciferase-like monooxygenase BUM88_07815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_07815 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BUM88_07825 PF00497 Bacterial extracellular solute-binding proteins, family 3 BUM88_07830 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_07835 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_07840 PF00005 ABC transporter BUM88_07850 PF01037 Lrp/AsnC ligand binding domain BUM88_07855 PF01709 Transcriptional regulator BUM88_07865 PF00440 Bacterial regulatory proteins, tetR family BUM88_07875 PF13356 Arm DNA-binding domain BUM88_07875 PF00589 Phage integrase family BUM88_08030 PF00145 C-5 cytosine-specific DNA methylase BUM88_08160 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system BUM88_08170 PF10145 Phage-related minor tail protein BUM88_08170 PF01464 Transglycosylase SLT domain BUM88_08170 PF01551 Peptidase family M23 BUM88_08250 PF11799 impB/mucB/samB family C-terminal domain BUM88_08250 PF00817 impB/mucB/samB family BUM88_08250 PF11798 IMS family HHH motif BUM88_08250 PF13438 Domain of unknown function (DUF4113) BUM88_08255 PF00717 Peptidase S24-like BUM88_08270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_08270 PF03466 LysR substrate binding domain BUM88_08280 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BUM88_08290 PF00892 EamA-like transporter family BUM88_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_08295 PF03466 LysR substrate binding domain BUM88_08305 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BUM88_08305 PF12833 Helix-turn-helix domain BUM88_08320 PF00419 Fimbrial protein BUM88_08325 PF13953 PapC C-terminal domain BUM88_08325 PF00577 Outer membrane usher protein BUM88_08325 PF13954 PapC N-terminal domain BUM88_08330 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BUM88_08330 PF02753 Pili assembly chaperone PapD, C-terminal domain BUM88_08335 PF16970 Type-1 fimbrial protein, A BUM88_08350 PF04055 Radical SAM superfamily BUM88_08350 PF06968 Biotin and Thiamin Synthesis associated domain BUM88_08355 PF08331 Domain of unknown function (DUF1730) BUM88_08360 PF03853 YjeF-related protein N-terminus BUM88_08360 PF01256 Carbohydrate kinase BUM88_08365 PF02075 Crossover junction endodeoxyribonuclease RuvC BUM88_08380 PF00905 Penicillin binding protein transpeptidase domain BUM88_08400 PF02773 S-adenosylmethionine synthetase, C-terminal domain BUM88_08400 PF00438 S-adenosylmethionine synthetase, N-terminal domain BUM88_08400 PF02772 S-adenosylmethionine synthetase, central domain BUM88_08405 PF00456 Transketolase, thiamine diphosphate binding domain BUM88_08405 PF02780 Transketolase, C-terminal domain BUM88_08405 PF02779 Transketolase, pyrimidine binding domain BUM88_08415 PF04264 YceI-like domain BUM88_08425 PF09992 Phosphodiester glycosidase BUM88_08435 PF05958 tRNA (Uracil-5-)-methyltransferase BUM88_08440 PF04229 GrpB protein BUM88_08445 PF01619 Proline dehydrogenase BUM88_08445 PF00171 Aldehyde dehydrogenase family BUM88_08445 PF14850 DNA-binding domain of Proline dehydrogenase BUM88_08445 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BUM88_08450 PF01037 Lrp/AsnC ligand binding domain BUM88_08455 PF00474 Sodium:solute symporter family BUM88_08460 PF02146 Sir2 family BUM88_08465 PF01597 Glycine cleavage H-protein BUM88_08470 PF12833 Helix-turn-helix domain BUM88_08470 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BUM88_08480 PF00664 ABC transporter transmembrane region BUM88_08480 PF00005 ABC transporter BUM88_08485 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BUM88_08490 PF06912 Protein of unknown function (DUF1275) BUM88_08495 PF00375 Sodium:dicarboxylate symporter family BUM88_08510 PF08007 Cupin superfamily protein BUM88_08515 PF02545 Maf-like protein BUM88_08525 PF00162 Phosphoglycerate kinase BUM88_08535 PF01116 Fructose-bisphosphate aldolase class-II BUM88_08540 PF00639 PPIC-type PPIASE domain BUM88_08540 PF09312 SurA N-terminal domain BUM88_08545 PF03968 OstA-like protein BUM88_08545 PF04453 LPS transport system D BUM88_08550 PF01636 Phosphotransferase enzyme family BUM88_08555 PF00483 Nucleotidyl transferase BUM88_08560 PF02527 rRNA small subunit methyltransferase G BUM88_08565 PF13614 AAA domain BUM88_08570 PF17762 HTH domain found in ParB protein BUM88_08570 PF02195 ParB-like nuclease domain BUM88_08575 PF01618 MotA/TolQ/ExbB proton channel family BUM88_08585 PF00005 ABC transporter BUM88_08585 PF00664 ABC transporter transmembrane region BUM88_08590 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BUM88_08595 PF02348 Cytidylyltransferase BUM88_08600 PF09115 DNA polymerase III, delta subunit, C terminal BUM88_08610 PF01026 TatD related DNase BUM88_08625 PF07963 Prokaryotic N-terminal methylation motif BUM88_08625 PF02501 Type II secretion system (T2SS), protein I BUM88_08630 PF11612 Type II secretion system (T2SS), protein J BUM88_08630 PF07963 Prokaryotic N-terminal methylation motif BUM88_08635 PF03934 Type II secretion system (T2SS), protein K BUM88_08645 PF03167 Uracil DNA glycosylase superfamily BUM88_08655 PF14437 MafB19-like deaminase BUM88_08665 PF02224 Cytidylate kinase BUM88_08670 PF00575 S1 RNA binding domain BUM88_08675 PF00216 Bacterial DNA-binding protein BUM88_08685 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BUM88_08690 PF03956 Lysine exporter LysO BUM88_08695 PF00743 Flavin-binding monooxygenase-like BUM88_08705 PF03969 AFG1-like ATPase BUM88_08710 PF01274 Malate synthase BUM88_08720 PF02472 Biopolymer transport protein ExbD/TolR BUM88_08725 PF02472 Biopolymer transport protein ExbD/TolR BUM88_08730 PF01618 MotA/TolQ/ExbB proton channel family BUM88_08740 PF00593 TonB dependent receptor BUM88_08740 PF07715 TonB-dependent Receptor Plug Domain BUM88_08750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BUM88_08755 PF01432 Peptidase family M3 BUM88_08760 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_08765 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_08765 PF12911 N-terminal TM domain of oligopeptide transport permease C BUM88_08770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BUM88_08770 PF00005 ABC transporter BUM88_08785 PF00459 Inositol monophosphatase family BUM88_08795 PF01649 Ribosomal protein S20 BUM88_08800 PF13460 NAD(P)H-binding BUM88_08805 PF03737 Aldolase/RraA BUM88_08825 PF03461 TRCF domain BUM88_08825 PF00271 Helicase conserved C-terminal domain BUM88_08825 PF00270 DEAD/DEAH box helicase BUM88_08825 PF02559 CarD-like/TRCF domain BUM88_08825 PF17757 UvrB interaction domain BUM88_08835 PF00211 Adenylate and Guanylate cyclase catalytic domain BUM88_08840 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_08845 PF00012 Hsp70 protein BUM88_08850 PF07743 HSCB C-terminal oligomerisation domain BUM88_08850 PF00226 DnaJ domain BUM88_08855 PF01521 Iron-sulphur cluster biosynthesis BUM88_08860 PF01592 NifU-like N terminal domain BUM88_08865 PF00266 Aminotransferase class-V BUM88_08870 PF02082 Transcriptional regulator BUM88_08885 PF00216 Bacterial DNA-binding protein BUM88_08890 PF00639 PPIC-type PPIASE domain BUM88_08890 PF09312 SurA N-terminal domain BUM88_08895 PF12833 Helix-turn-helix domain BUM88_08895 PF12852 Cupin BUM88_08900 PF00487 Fatty acid desaturase BUM88_08905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_08905 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_08905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_08910 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_08910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_08910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_08915 PF03109 ABC1 family BUM88_08925 PF04073 Aminoacyl-tRNA editing domain BUM88_08930 PF07715 TonB-dependent Receptor Plug Domain BUM88_08930 PF00593 TonB dependent receptor BUM88_08950 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BUM88_08955 PF02277 Phosphoribosyltransferase BUM88_08960 PF00300 Histidine phosphatase superfamily (branch 1) BUM88_08970 PF02654 Cobalamin-5-phosphate synthase BUM88_08975 PF00793 DAHP synthetase I family BUM88_08980 PF01925 Sulfite exporter TauE/SafE BUM88_09000 PF07715 TonB-dependent Receptor Plug Domain BUM88_09000 PF00593 TonB dependent receptor BUM88_09005 PF02684 Lipid-A-disaccharide synthetase BUM88_09030 PF01230 HIT domain BUM88_09050 PF01053 Cys/Met metabolism PLP-dependent enzyme BUM88_09060 PF02575 YbaB/EbfC DNA-binding family BUM88_09065 PF13662 Toprim domain BUM88_09065 PF02132 RecR protein BUM88_09070 PF01612 3'-5' exonuclease BUM88_09070 PF00570 HRDC domain BUM88_09075 PF02525 Flavodoxin-like fold BUM88_09080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_09080 PF03466 LysR substrate binding domain BUM88_09100 PF05166 YcgL domain BUM88_09110 PF00004 ATPase family associated with various cellular activities (AAA) BUM88_09110 PF17862 AAA+ lid domain BUM88_09110 PF01434 Peptidase family M41 BUM88_09120 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_09125 PF05175 Methyltransferase small domain BUM88_09130 PF01264 Chorismate synthase BUM88_09140 PF00990 Diguanylate cyclase, GGDEF domain BUM88_09140 PF08448 PAS fold BUM88_09155 PF04055 Radical SAM superfamily BUM88_09160 PF00676 Dehydrogenase E1 component BUM88_09165 PF02779 Transketolase, pyrimidine binding domain BUM88_09165 PF02780 Transketolase, C-terminal domain BUM88_09170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BUM88_09170 PF00364 Biotin-requiring enzyme BUM88_09170 PF02817 e3 binding domain BUM88_09175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BUM88_09175 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_09180 PF00106 short chain dehydrogenase BUM88_09185 PF00107 Zinc-binding dehydrogenase BUM88_09185 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_09200 PF00158 Sigma-54 interaction domain BUM88_09200 PF00072 Response regulator receiver domain BUM88_09200 PF02954 Bacterial regulatory protein, Fis family BUM88_09205 PF04273 Putative phosphatase (DUF442) BUM88_09205 PF00753 Metallo-beta-lactamase superfamily BUM88_09210 PF00753 Metallo-beta-lactamase superfamily BUM88_09210 PF04273 Putative phosphatase (DUF442) BUM88_09215 PF01925 Sulfite exporter TauE/SafE BUM88_09230 PF06445 GyrI-like small molecule binding domain BUM88_09230 PF12833 Helix-turn-helix domain BUM88_09255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BUM88_09260 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_09265 PF00005 ABC transporter BUM88_09280 PF00083 Sugar (and other) transporter BUM88_09285 PF00593 TonB dependent receptor BUM88_09285 PF07715 TonB-dependent Receptor Plug Domain BUM88_09290 PF00206 Lyase BUM88_09290 PF10415 Fumarase C C-terminus BUM88_09305 PF03466 LysR substrate binding domain BUM88_09305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_09310 PF03466 LysR substrate binding domain BUM88_09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_09315 PF00108 Thiolase, N-terminal domain BUM88_09315 PF02803 Thiolase, C-terminal domain BUM88_09320 PF02667 Short chain fatty acid transporter BUM88_09325 PF01144 Coenzyme A transferase BUM88_09330 PF01144 Coenzyme A transferase BUM88_09335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_09335 PF03466 LysR substrate binding domain BUM88_09400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BUM88_09420 PF12833 Helix-turn-helix domain BUM88_09420 PF06719 AraC-type transcriptional regulator N-terminus BUM88_09425 PF07690 Major Facilitator Superfamily BUM88_09435 PF01738 Dienelactone hydrolase family BUM88_09450 PF01613 Flavin reductase like domain BUM88_09460 PF14525 AraC-binding-like domain BUM88_09460 PF12833 Helix-turn-helix domain BUM88_09465 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_09465 PF00175 Oxidoreductase NAD-binding domain BUM88_09465 PF00970 Oxidoreductase FAD-binding domain BUM88_09470 PF00866 Ring hydroxylating beta subunit BUM88_09475 PF00355 Rieske [2Fe-2S] domain BUM88_09475 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BUM88_09480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_09480 PF03459 TOBE domain BUM88_09490 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_09495 PF00005 ABC transporter BUM88_09495 PF03459 TOBE domain BUM88_09515 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BUM88_09515 PF01648 4'-phosphopantetheinyl transferase superfamily BUM88_09520 PF05977 Transmembrane secretion effector BUM88_09525 PF00501 AMP-binding enzyme BUM88_09525 PF13193 AMP-binding enzyme C-terminal domain BUM88_09525 PF00668 Condensation domain BUM88_09525 PF00550 Phosphopantetheine attachment site BUM88_09525 PF00975 Thioesterase domain BUM88_09530 PF03621 MbtH-like protein BUM88_09540 PF00106 short chain dehydrogenase BUM88_09545 PF00425 chorismate binding enzyme BUM88_09550 PF13193 AMP-binding enzyme C-terminal domain BUM88_09550 PF00501 AMP-binding enzyme BUM88_09555 PF00857 Isochorismatase family BUM88_09555 PF00550 Phosphopantetheine attachment site BUM88_09560 PF00873 AcrB/AcrD/AcrF family BUM88_09565 PF07715 TonB-dependent Receptor Plug Domain BUM88_09565 PF00593 TonB dependent receptor BUM88_09575 PF00149 Calcineurin-like phosphoesterase BUM88_09580 PF08042 PqqA family BUM88_09585 PF12706 Beta-lactamase superfamily domain BUM88_09590 PF03070 TENA/THI-4/PQQC family BUM88_09595 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BUM88_09600 PF04055 Radical SAM superfamily BUM88_09600 PF13186 Iron-sulfur cluster-binding domain BUM88_09605 PF01244 Membrane dipeptidase (Peptidase family M19) BUM88_09620 PF00873 AcrB/AcrD/AcrF family BUM88_09625 PF00529 HlyD membrane-fusion protein of T1SS BUM88_09625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BUM88_09630 PF00486 Transcriptional regulatory protein, C terminal BUM88_09630 PF00072 Response regulator receiver domain BUM88_09635 PF00672 HAMP domain BUM88_09635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_09635 PF00512 His Kinase A (phospho-acceptor) domain BUM88_09645 PF13091 PLD-like domain BUM88_09665 PF00199 Catalase BUM88_09675 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_09675 PF00107 Zinc-binding dehydrogenase BUM88_09690 PF00577 Outer membrane usher protein BUM88_09690 PF13954 PapC N-terminal domain BUM88_09690 PF13953 PapC C-terminal domain BUM88_09695 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BUM88_09695 PF02753 Pili assembly chaperone PapD, C-terminal domain BUM88_09700 PF16970 Type-1 fimbrial protein, A BUM88_09720 PF00296 Luciferase-like monooxygenase BUM88_09725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BUM88_09730 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_09735 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_09735 PF12911 N-terminal TM domain of oligopeptide transport permease C BUM88_09740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BUM88_09740 PF00005 ABC transporter BUM88_09745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_09745 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BUM88_09745 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_09755 PF00005 ABC transporter BUM88_09755 PF00664 ABC transporter transmembrane region BUM88_09760 PF00005 ABC transporter BUM88_09760 PF00664 ABC transporter transmembrane region BUM88_09765 PF00593 TonB dependent receptor BUM88_09765 PF07715 TonB-dependent Receptor Plug Domain BUM88_09775 PF00296 Luciferase-like monooxygenase BUM88_09780 PF00158 Sigma-54 interaction domain BUM88_09785 PF00902 Sec-independent protein translocase protein (TatC) BUM88_09790 PF02416 mttA/Hcf106 family BUM88_09795 PF02416 mttA/Hcf106 family BUM88_09800 PF00005 ABC transporter BUM88_09805 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_09810 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_09815 PF09084 NMT1/THI5 like BUM88_09820 PF00296 Luciferase-like monooxygenase BUM88_09825 PF03544 Gram-negative bacterial TonB protein C-terminal BUM88_09830 PF01618 MotA/TolQ/ExbB proton channel family BUM88_09835 PF02472 Biopolymer transport protein ExbD/TolR BUM88_09840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BUM88_09850 PF07715 TonB-dependent Receptor Plug Domain BUM88_09850 PF00593 TonB dependent receptor BUM88_09865 PF09905 DNA-binding protein VF530 BUM88_09870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_09870 PF03466 LysR substrate binding domain BUM88_09880 PF00465 Iron-containing alcohol dehydrogenase BUM88_09890 PF00083 Sugar (and other) transporter BUM88_09895 PF00005 ABC transporter BUM88_09895 PF17755 UvrA DNA-binding domain BUM88_09895 PF17760 UvrA interaction domain BUM88_09910 PF07969 Amidohydrolase family BUM88_09945 PF13291 ACT domain BUM88_09945 PF02824 TGS domain BUM88_09945 PF04607 Region found in RelA / SpoT proteins BUM88_09970 PF07690 Major Facilitator Superfamily BUM88_09975 PF13533 Biotin-lipoyl like BUM88_09980 PF01425 Amidase BUM88_10015 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BUM88_10020 PF14572 Phosphoribosyl synthetase-associated domain BUM88_10020 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BUM88_10025 PF03466 LysR substrate binding domain BUM88_10025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_10030 PF00375 Sodium:dicarboxylate symporter family BUM88_10040 PF01810 LysE type translocator BUM88_10045 PF01613 Flavin reductase like domain BUM88_10050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BUM88_10055 PF11066 Protein of unknown function (DUF2867) BUM88_10055 PF13460 NAD(P)H-binding BUM88_10060 PF00106 short chain dehydrogenase BUM88_10070 PF00248 Aldo/keto reductase family BUM88_10075 PF03466 LysR substrate binding domain BUM88_10075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_10090 PF00005 ABC transporter BUM88_10130 PF00107 Zinc-binding dehydrogenase BUM88_10130 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_10145 PF12833 Helix-turn-helix domain BUM88_10145 PF06719 AraC-type transcriptional regulator N-terminus BUM88_10150 PF00313 'Cold-shock' DNA-binding domain BUM88_10170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BUM88_10170 PF00529 HlyD membrane-fusion protein of T1SS BUM88_10175 PF00324 Amino acid permease BUM88_10180 PF00171 Aldehyde dehydrogenase family BUM88_10185 PF00202 Aminotransferase class-III BUM88_10190 PF03466 LysR substrate binding domain BUM88_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_10210 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) BUM88_10250 PF00501 AMP-binding enzyme BUM88_10250 PF13193 AMP-binding enzyme C-terminal domain BUM88_10260 PF12806 Acetyl-CoA dehydrogenase C-terminal like BUM88_10260 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_10260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_10260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_10265 PF01575 MaoC like domain BUM88_10270 PF00106 short chain dehydrogenase BUM88_10295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_10295 PF03466 LysR substrate binding domain BUM88_10345 PF01965 DJ-1/PfpI family BUM88_10350 PF12706 Beta-lactamase superfamily domain BUM88_10355 PF14278 Transcriptional regulator C-terminal region BUM88_10355 PF00440 Bacterial regulatory proteins, tetR family BUM88_10370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_10370 PF03466 LysR substrate binding domain BUM88_10380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BUM88_10390 PF06314 Acetoacetate decarboxylase (ADC) BUM88_10400 PF12833 Helix-turn-helix domain BUM88_10400 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BUM88_10405 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BUM88_10405 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BUM88_10410 PF07690 Major Facilitator Superfamily BUM88_10415 PF01370 NAD dependent epimerase/dehydratase family BUM88_10435 PF00920 Dehydratase family BUM88_10440 PF00171 Aldehyde dehydrogenase family BUM88_10445 PF05368 NmrA-like family BUM88_10450 PF01638 HxlR-like helix-turn-helix BUM88_10455 PF01638 HxlR-like helix-turn-helix BUM88_10470 PF00561 alpha/beta hydrolase fold BUM88_10475 PF00561 alpha/beta hydrolase fold BUM88_10480 PF05199 GMC oxidoreductase BUM88_10485 PF13193 AMP-binding enzyme C-terminal domain BUM88_10485 PF00501 AMP-binding enzyme BUM88_10490 PF12146 Serine aminopeptidase, S33 BUM88_10495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BUM88_10495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BUM88_10495 PF00378 Enoyl-CoA hydratase/isomerase BUM88_10505 PF00106 short chain dehydrogenase BUM88_10510 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_10510 PF00109 Beta-ketoacyl synthase, N-terminal domain BUM88_10510 PF16197 Ketoacyl-synthetase C-terminal extension BUM88_10510 PF14765 Polyketide synthase dehydratase BUM88_10510 PF00698 Acyl transferase domain BUM88_10510 PF00550 Phosphopantetheine attachment site BUM88_10510 PF08659 KR domain BUM88_10510 PF02801 Beta-ketoacyl synthase, C-terminal domain BUM88_10540 PF08359 YsiA-like protein, C-terminal region BUM88_10540 PF00440 Bacterial regulatory proteins, tetR family BUM88_10545 PF12706 Beta-lactamase superfamily domain BUM88_10560 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_10570 PF00561 alpha/beta hydrolase fold BUM88_10575 PF00171 Aldehyde dehydrogenase family BUM88_10585 PF07690 Major Facilitator Superfamily BUM88_10590 PF00920 Dehydratase family BUM88_10595 PF07729 FCD domain BUM88_10595 PF00392 Bacterial regulatory proteins, gntR family BUM88_10605 PF03466 LysR substrate binding domain BUM88_10605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_10610 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BUM88_10610 PF13378 Enolase C-terminal domain-like BUM88_10615 PF02426 Muconolactone delta-isomerase BUM88_10620 PF00775 Dioxygenase BUM88_10620 PF04444 Catechol dioxygenase N terminus BUM88_10625 PF01144 Coenzyme A transferase BUM88_10630 PF01144 Coenzyme A transferase BUM88_10635 PF02803 Thiolase, C-terminal domain BUM88_10635 PF00108 Thiolase, N-terminal domain BUM88_10640 PF12146 Serine aminopeptidase, S33 BUM88_10645 PF01804 Penicillin amidase BUM88_10650 PF00171 Aldehyde dehydrogenase family BUM88_10660 PF01179 Copper amine oxidase, enzyme domain BUM88_10660 PF07833 Copper amine oxidase N-terminal domain BUM88_10660 PF02728 Copper amine oxidase, N3 domain BUM88_10660 PF02727 Copper amine oxidase, N2 domain BUM88_10665 PF02311 AraC-like ligand binding domain BUM88_10665 PF12833 Helix-turn-helix domain BUM88_10670 PF01613 Flavin reductase like domain BUM88_10675 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_10675 PF00175 Oxidoreductase NAD-binding domain BUM88_10690 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BUM88_10690 PF00355 Rieske [2Fe-2S] domain BUM88_10705 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BUM88_10710 PF01425 Amidase BUM88_10720 PF07690 Major Facilitator Superfamily BUM88_10730 PF00106 short chain dehydrogenase BUM88_10745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_10745 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_10745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_10750 PF03466 LysR substrate binding domain BUM88_10750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_10755 PF01614 Bacterial transcriptional regulator BUM88_10755 PF09339 IclR helix-turn-helix domain BUM88_10760 PF00753 Metallo-beta-lactamase superfamily BUM88_10770 PF04143 Sulphur transport BUM88_10780 PF13360 PQQ-like domain BUM88_10780 PF01011 PQQ enzyme repeat BUM88_10785 PF04966 Carbohydrate-selective porin, OprB family BUM88_10790 PF05048 Periplasmic copper-binding protein (NosD) BUM88_10795 PF01487 Type I 3-dehydroquinase BUM88_10800 PF00775 Dioxygenase BUM88_10805 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BUM88_10805 PF00775 Dioxygenase BUM88_10810 PF02627 Carboxymuconolactone decarboxylase family BUM88_10815 PF07690 Major Facilitator Superfamily BUM88_10820 PF00561 alpha/beta hydrolase fold BUM88_10825 PF00206 Lyase BUM88_10825 PF10397 Adenylosuccinate lyase C-terminus BUM88_10830 PF02803 Thiolase, C-terminal domain BUM88_10830 PF00108 Thiolase, N-terminal domain BUM88_10835 PF01144 Coenzyme A transferase BUM88_10840 PF01144 Coenzyme A transferase BUM88_10845 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BUM88_10850 PF04977 Septum formation initiator BUM88_10855 PF00593 TonB dependent receptor BUM88_10855 PF07715 TonB-dependent Receptor Plug Domain BUM88_10870 PF04239 Protein of unknown function (DUF421) BUM88_10875 PF03952 Enolase, N-terminal domain BUM88_10875 PF00113 Enolase, C-terminal TIM barrel domain BUM88_10880 PF00793 DAHP synthetase I family BUM88_10885 PF06418 CTP synthase N-terminus BUM88_10885 PF00117 Glutamine amidotransferase class-I BUM88_10915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BUM88_10915 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_10930 PF00793 DAHP synthetase I family BUM88_10935 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BUM88_10940 PF02861 Clp amino terminal domain, pathogenicity island component BUM88_10940 PF17871 AAA lid domain BUM88_10940 PF07724 AAA domain (Cdc48 subfamily) BUM88_10940 PF00004 ATPase family associated with various cellular activities (AAA) BUM88_10940 PF10431 C-terminal, D2-small domain, of ClpB protein BUM88_10945 PF02617 ATP-dependent Clp protease adaptor protein ClpS BUM88_10955 PF02774 Semialdehyde dehydrogenase, dimerisation domain BUM88_10955 PF01118 Semialdehyde dehydrogenase, NAD binding domain BUM88_10970 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BUM88_10975 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_10975 PF00585 C-terminal regulatory domain of Threonine dehydratase BUM88_10980 PF02254 TrkA-N domain BUM88_10980 PF02080 TrkA-C domain BUM88_10985 PF02386 Cation transport protein BUM88_10990 PF02253 Phospholipase A1 BUM88_10995 PF00675 Insulinase (Peptidase family M16) BUM88_10995 PF08367 Peptidase M16C associated BUM88_10995 PF05193 Peptidase M16 inactive domain BUM88_11000 PF07715 TonB-dependent Receptor Plug Domain BUM88_11000 PF00593 TonB dependent receptor BUM88_11005 PF00294 pfkB family carbohydrate kinase BUM88_11015 PF07290 Protein of unknown function (DUF1449) BUM88_11025 PF01654 Cytochrome bd terminal oxidase subunit I BUM88_11030 PF02322 Cytochrome bd terminal oxidase subunit II BUM88_11035 PF08173 Membrane bound YbgT-like protein BUM88_11060 PF02881 SRP54-type protein, helical bundle domain BUM88_11060 PF00448 SRP54-type protein, GTPase domain BUM88_11085 PF00571 CBS domain BUM88_11085 PF01380 SIS domain BUM88_11090 PF00202 Aminotransferase class-III BUM88_11095 PF00462 Glutaredoxin BUM88_11105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_11105 PF03466 LysR substrate binding domain BUM88_11110 PF00557 Metallopeptidase family M24 BUM88_11115 PF05525 Branched-chain amino acid transport protein BUM88_11120 PF03928 Haem-degrading BUM88_11140 PF02896 PEP-utilising enzyme, TIM barrel domain BUM88_11140 PF00381 PTS HPr component phosphorylation site BUM88_11140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BUM88_11140 PF05524 PEP-utilising enzyme, N-terminal BUM88_11140 PF00391 PEP-utilising enzyme, mobile domain BUM88_11145 PF00294 pfkB family carbohydrate kinase BUM88_11150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BUM88_11150 PF02378 Phosphotransferase system, EIIC BUM88_11165 PF00990 Diguanylate cyclase, GGDEF domain BUM88_11165 PF03707 Bacterial signalling protein N terminal repeat BUM88_11165 PF00563 EAL domain BUM88_11175 PF07995 Glucose / Sorbosone dehydrogenase BUM88_11180 PF00916 Sulfate permease family BUM88_11180 PF01740 STAS domain BUM88_11185 PF05922 Peptidase inhibitor I9 BUM88_11185 PF00082 Subtilase family BUM88_11200 PF00324 Amino acid permease BUM88_11205 PF00266 Aminotransferase class-V BUM88_11210 PF01037 Lrp/AsnC ligand binding domain BUM88_11225 PF13419 Haloacid dehalogenase-like hydrolase BUM88_11230 PF01479 S4 domain BUM88_11235 PF00154 recA bacterial DNA recombination protein BUM88_11240 PF02631 RecX family BUM88_11255 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_11255 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BUM88_11260 PF07977 FabA-like domain BUM88_11265 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_11265 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BUM88_11275 PF07244 Surface antigen variable number repeat BUM88_11275 PF01103 Surface antigen BUM88_11280 PF13180 PDZ domain BUM88_11280 PF17820 PDZ domain BUM88_11280 PF02163 Peptidase family M50 BUM88_11285 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BUM88_11285 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BUM88_11285 PF13288 DXP reductoisomerase C-terminal domain BUM88_11295 PF01255 Putative undecaprenyl diphosphate synthase BUM88_11300 PF01765 Ribosome recycling factor BUM88_11305 PF00696 Amino acid kinase family BUM88_11310 PF00919 Uncharacterized protein family UPF0004 BUM88_11310 PF18693 TRAM domain BUM88_11310 PF04055 Radical SAM superfamily BUM88_11320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_11320 PF00512 His Kinase A (phospho-acceptor) domain BUM88_11320 PF00989 PAS fold BUM88_11325 PF02954 Bacterial regulatory protein, Fis family BUM88_11325 PF00072 Response regulator receiver domain BUM88_11325 PF00158 Sigma-54 interaction domain BUM88_11330 PF00440 Bacterial regulatory proteins, tetR family BUM88_11335 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BUM88_11335 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BUM88_11345 PF02542 YgbB family BUM88_11355 PF01266 FAD dependent oxidoreductase BUM88_11365 PF00857 Isochorismatase family BUM88_11380 PF10415 Fumarase C C-terminus BUM88_11380 PF00206 Lyase BUM88_11385 PF16363 GDP-mannose 4,6 dehydratase BUM88_11390 PF02635 DsrE/DsrF-like family BUM88_11410 PF00892 EamA-like transporter family BUM88_11415 PF00155 Aminotransferase class I and II BUM88_11415 PF00392 Bacterial regulatory proteins, gntR family BUM88_11420 PF01638 HxlR-like helix-turn-helix BUM88_11425 PF03453 MoeA N-terminal region (domain I and II) BUM88_11425 PF00994 Probable molybdopterin binding domain BUM88_11425 PF03454 MoeA C-terminal region (domain IV) BUM88_11430 PF00994 Probable molybdopterin binding domain BUM88_11430 PF01967 MoaC family BUM88_11435 PF02391 MoaE protein BUM88_11445 PF06463 Molybdenum Cofactor Synthesis C BUM88_11445 PF04055 Radical SAM superfamily BUM88_11450 PF00384 Molybdopterin oxidoreductase BUM88_11450 PF01568 Molydopterin dinucleotide binding domain BUM88_11450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BUM88_11455 PF12804 MobA-like NTP transferase domain BUM88_11460 PF01568 Molydopterin dinucleotide binding domain BUM88_11460 PF04324 BFD-like [2Fe-2S] binding domain BUM88_11460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BUM88_11460 PF00384 Molybdopterin oxidoreductase BUM88_11465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BUM88_11465 PF18267 Rubredoxin NAD+ reductase C-terminal domain BUM88_11465 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_11465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BUM88_11465 PF04324 BFD-like [2Fe-2S] binding domain BUM88_11470 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BUM88_11470 PF04324 BFD-like [2Fe-2S] binding domain BUM88_11470 PF18267 Rubredoxin NAD+ reductase C-terminal domain BUM88_11470 PF13806 Rieske-like [2Fe-2S] domain BUM88_11470 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_11470 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BUM88_11485 PF00005 ABC transporter BUM88_11495 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_11500 PF02423 Ornithine cyclodeaminase/mu-crystallin family BUM88_11505 PF06276 Ferric iron reductase FhuF-like transporter BUM88_11505 PF04183 IucA / IucC family BUM88_11510 PF07690 Major Facilitator Superfamily BUM88_11515 PF06276 Ferric iron reductase FhuF-like transporter BUM88_11515 PF04183 IucA / IucC family BUM88_11520 PF03328 HpcH/HpaI aldolase/citrate lyase family BUM88_11525 PF07715 TonB-dependent Receptor Plug Domain BUM88_11525 PF00593 TonB dependent receptor BUM88_11530 PF11799 impB/mucB/samB family C-terminal domain BUM88_11530 PF00817 impB/mucB/samB family BUM88_11530 PF13438 Domain of unknown function (DUF4113) BUM88_11535 PF01220 Dehydroquinase class II BUM88_11540 PF00364 Biotin-requiring enzyme BUM88_11545 PF02785 Biotin carboxylase C-terminal domain BUM88_11545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BUM88_11545 PF00289 Biotin carboxylase, N-terminal domain BUM88_11555 PF12832 MFS_1 like family BUM88_11565 PF13954 PapC N-terminal domain BUM88_11565 PF00577 Outer membrane usher protein BUM88_11565 PF13953 PapC C-terminal domain BUM88_11585 PF01645 Conserved region in glutamate synthase BUM88_11610 PF01565 FAD binding domain BUM88_11610 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BUM88_11615 PF01451 Low molecular weight phosphotyrosine protein phosphatase BUM88_11620 PF01757 Acyltransferase family BUM88_11635 PF00465 Iron-containing alcohol dehydrogenase BUM88_11640 PF03061 Thioesterase superfamily BUM88_11645 PF05506 Domain of unknown function (DUF756) BUM88_11645 PF04185 Phosphoesterase family BUM88_11650 PF12169 DNA polymerase III subunits gamma and tau domain III BUM88_11650 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BUM88_11650 PF12170 DNA polymerase III tau subunit V interacting with alpha BUM88_11665 PF07690 Major Facilitator Superfamily BUM88_11690 PF00108 Thiolase, N-terminal domain BUM88_11690 PF02803 Thiolase, C-terminal domain BUM88_11700 PF03466 LysR substrate binding domain BUM88_11700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_11710 PF01810 LysE type translocator BUM88_11715 PF01037 Lrp/AsnC ligand binding domain BUM88_11720 PF03594 Benzoate membrane transport protein BUM88_11740 PF00582 Universal stress protein family BUM88_11745 PF12848 ABC transporter BUM88_11745 PF00005 ABC transporter BUM88_11750 PF04151 Bacterial pre-peptidase C-terminal domain BUM88_11765 PF04076 Bacterial OB fold (BOF) protein BUM88_11780 PF03466 LysR substrate binding domain BUM88_11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_11800 PF01638 HxlR-like helix-turn-helix BUM88_11855 PF00486 Transcriptional regulatory protein, C terminal BUM88_11855 PF00072 Response regulator receiver domain BUM88_11860 PF00672 HAMP domain BUM88_11860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_11860 PF00512 His Kinase A (phospho-acceptor) domain BUM88_11880 PF01810 LysE type translocator BUM88_11885 PF01817 Chorismate mutase type II BUM88_11910 PF13954 PapC N-terminal domain BUM88_11910 PF13953 PapC C-terminal domain BUM88_11910 PF00577 Outer membrane usher protein BUM88_11925 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BUM88_11925 PF11940 Domain of unknown function (DUF3458) Ig-like fold BUM88_11925 PF01433 Peptidase family M1 domain BUM88_11940 PF02110 Hydroxyethylthiazole kinase family BUM88_11950 PF05970 PIF1-like helicase BUM88_11950 PF14493 Helix-turn-helix domain BUM88_11955 PF00465 Iron-containing alcohol dehydrogenase BUM88_11970 PF00171 Aldehyde dehydrogenase family BUM88_11975 PF13520 Amino acid permease BUM88_11980 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BUM88_11985 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BUM88_11990 PF00117 Glutamine amidotransferase class-I BUM88_11990 PF00958 GMP synthase C terminal domain BUM88_11990 PF02540 NAD synthase BUM88_11995 PF00749 tRNA synthetases class I (E and Q), catalytic domain BUM88_11995 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BUM88_12000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BUM88_12005 PF00149 Calcineurin-like phosphoesterase BUM88_12015 PF00881 Nitroreductase family BUM88_12025 PF17209 Hfq protein BUM88_12035 PF01119 DNA mismatch repair protein, C-terminal domain BUM88_12035 PF08676 MutL C terminal dimerisation domain BUM88_12040 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BUM88_12045 PF01479 S4 domain BUM88_12045 PF00849 RNA pseudouridylate synthase BUM88_12060 PF01479 S4 domain BUM88_12060 PF00849 RNA pseudouridylate synthase BUM88_12070 PF04284 Protein of unknown function (DUF441) BUM88_12075 PF03466 LysR substrate binding domain BUM88_12075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_12090 PF07690 Major Facilitator Superfamily BUM88_12095 PF00520 Ion transport protein BUM88_12095 PF00027 Cyclic nucleotide-binding domain BUM88_12105 PF00939 Sodium:sulfate symporter transmembrane region BUM88_12115 PF00330 Aconitase family (aconitate hydratase) BUM88_12115 PF06434 Aconitate hydratase 2 N-terminus BUM88_12115 PF11791 Aconitate B N-terminal domain BUM88_12130 PF10282 Lactonase, 7-bladed beta-propeller BUM88_12140 PF01103 Surface antigen BUM88_12140 PF07244 Surface antigen variable number repeat BUM88_12140 PF17243 POTRA domain TamA domain 1 BUM88_12145 PF07690 Major Facilitator Superfamily BUM88_12150 PF03232 Ubiquinone biosynthesis protein COQ7 BUM88_12160 PF00120 Glutamine synthetase, catalytic domain BUM88_12165 PF00486 Transcriptional regulatory protein, C terminal BUM88_12165 PF00072 Response regulator receiver domain BUM88_12170 PF02702 Osmosensitive K+ channel His kinase sensor domain BUM88_12170 PF00512 His Kinase A (phospho-acceptor) domain BUM88_12170 PF13493 Domain of unknown function (DUF4118) BUM88_12170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_12175 PF02669 K+-transporting ATPase, c chain BUM88_12185 PF03814 Potassium-transporting ATPase A subunit BUM88_12195 PF02152 Dihydroneopterin aldolase BUM88_12200 PF03109 ABC1 family BUM88_12205 PF00899 ThiF family BUM88_12210 PF01613 Flavin reductase like domain BUM88_12215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_12215 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_12215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_12220 PF00106 short chain dehydrogenase BUM88_12225 PF12833 Helix-turn-helix domain BUM88_12230 PF09084 NMT1/THI5 like BUM88_12235 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_12240 PF13847 Methyltransferase domain BUM88_12240 PF17827 PrmC N-terminal domain BUM88_12245 PF03462 PCRF domain BUM88_12245 PF00472 RF-1 domain BUM88_12255 PF03466 LysR substrate binding domain BUM88_12255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_12270 PF00296 Luciferase-like monooxygenase BUM88_12280 PF13994 PgaD-like protein BUM88_12285 PF00535 Glycosyl transferase family 2 BUM88_12290 PF01522 Polysaccharide deacetylase BUM88_12290 PF14883 Hypothetical glycosyl hydrolase family 13 BUM88_12300 PF03618 Kinase/pyrophosphorylase BUM88_12305 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BUM88_12305 PF02896 PEP-utilising enzyme, TIM barrel domain BUM88_12305 PF00391 PEP-utilising enzyme, mobile domain BUM88_12315 PF06481 COX Aromatic Rich Motif BUM88_12315 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BUM88_12320 PF00115 Cytochrome C and Quinol oxidase polypeptide I BUM88_12325 PF00510 Cytochrome c oxidase subunit III BUM88_12330 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BUM88_12335 PF01040 UbiA prenyltransferase family BUM88_12340 PF01250 Ribosomal protein S6 BUM88_12345 PF01084 Ribosomal protein S18 BUM88_12350 PF01281 Ribosomal protein L9, N-terminal domain BUM88_12350 PF03948 Ribosomal protein L9, C-terminal domain BUM88_12355 PF03796 DnaB-like helicase C terminal domain BUM88_12355 PF00772 DnaB-like helicase N terminal domain BUM88_12360 PF00842 Alanine racemase, C-terminal domain BUM88_12360 PF01168 Alanine racemase, N-terminal domain BUM88_12370 PF01841 Transglutaminase-like superfamily BUM88_12370 PF08379 Bacterial transglutaminase-like N-terminal region BUM88_12380 PF14403 Circularly permuted ATP-grasp type 2 BUM88_12390 PF01134 Glucose inhibited division protein A BUM88_12390 PF13932 GidA associated domain BUM88_12410 PF02954 Bacterial regulatory protein, Fis family BUM88_12415 PF02142 MGS-like domain BUM88_12415 PF01808 AICARFT/IMPCHase bienzyme BUM88_12420 PF02844 Phosphoribosylglycinamide synthetase, N domain BUM88_12420 PF02843 Phosphoribosylglycinamide synthetase, C domain BUM88_12420 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BUM88_12430 PF03180 NLPA lipoprotein BUM88_12435 PF09383 NIL domain BUM88_12435 PF00005 ABC transporter BUM88_12440 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_12445 PF16123 Hydroxyacylglutathione hydrolase C-terminus BUM88_12445 PF00753 Metallo-beta-lactamase superfamily BUM88_12455 PF00375 Sodium:dicarboxylate symporter family BUM88_12470 PF13417 Glutathione S-transferase, N-terminal domain BUM88_12470 PF00043 Glutathione S-transferase, C-terminal domain BUM88_12480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_12480 PF03466 LysR substrate binding domain BUM88_12485 PF07690 Major Facilitator Superfamily BUM88_12490 PF01494 FAD binding domain BUM88_12495 PF07995 Glucose / Sorbosone dehydrogenase BUM88_12520 PF03601 Conserved hypothetical protein 698 BUM88_12535 PF07690 Major Facilitator Superfamily BUM88_12540 PF05853 beta-keto acid cleavage enzyme BUM88_12545 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BUM88_12550 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_12550 PF00107 Zinc-binding dehydrogenase BUM88_12555 PF01177 Asp/Glu/Hydantoin racemase BUM88_12560 PF00293 NUDIX domain BUM88_12585 PF00486 Transcriptional regulatory protein, C terminal BUM88_12585 PF00072 Response regulator receiver domain BUM88_12590 PF00512 His Kinase A (phospho-acceptor) domain BUM88_12590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_12590 PF08521 Two-component sensor kinase N-terminal BUM88_12615 PF01593 Flavin containing amine oxidoreductase BUM88_12630 PF00672 HAMP domain BUM88_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_12630 PF00512 His Kinase A (phospho-acceptor) domain BUM88_12635 PF00072 Response regulator receiver domain BUM88_12635 PF00486 Transcriptional regulatory protein, C terminal BUM88_12645 PF00576 HIUase/Transthyretin family BUM88_12655 PF02470 MlaD protein BUM88_12660 PF04403 Paraquat-inducible protein A BUM88_12670 PF03466 LysR substrate binding domain BUM88_12670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_12685 PF06826 Predicted Permease Membrane Region BUM88_12685 PF02080 TrkA-C domain BUM88_12690 PF00155 Aminotransferase class I and II BUM88_12710 PF08946 Osmosensory transporter coiled coil BUM88_12710 PF00083 Sugar (and other) transporter BUM88_12720 PF00106 short chain dehydrogenase BUM88_12725 PF02254 TrkA-N domain BUM88_12725 PF00999 Sodium/hydrogen exchanger family BUM88_12730 PF03616 Sodium/glutamate symporter BUM88_12735 PF00561 alpha/beta hydrolase fold BUM88_12740 PF00487 Fatty acid desaturase BUM88_12745 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BUM88_12745 PF12833 Helix-turn-helix domain BUM88_12750 PF00440 Bacterial regulatory proteins, tetR family BUM88_12770 PF01638 HxlR-like helix-turn-helix BUM88_12775 PF00106 short chain dehydrogenase BUM88_12780 PF00873 AcrB/AcrD/AcrF family BUM88_12790 PF13977 BetI-type transcriptional repressor, C-terminal BUM88_12790 PF00440 Bacterial regulatory proteins, tetR family BUM88_12795 PF02321 Outer membrane efflux protein BUM88_12805 PF01554 MatE BUM88_12835 PF00313 'Cold-shock' DNA-binding domain BUM88_12870 PF00814 Glycoprotease family BUM88_12875 PF01165 Ribosomal protein S21 BUM88_12880 PF09424 Yqey-like protein BUM88_12885 PF01435 Peptidase family M48 BUM88_12890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BUM88_12890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BUM88_12905 PF00156 Phosphoribosyl transferase domain BUM88_12910 PF02674 Colicin V production protein BUM88_12915 PF01180 Dihydroorotate dehydrogenase BUM88_12935 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BUM88_12935 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BUM88_12940 PF00881 Nitroreductase family BUM88_12950 PF00270 DEAD/DEAH box helicase BUM88_12950 PF00271 Helicase conserved C-terminal domain BUM88_12955 PF00313 'Cold-shock' DNA-binding domain BUM88_12965 PF00140 Sigma-70 factor, region 1.2 BUM88_12965 PF04542 Sigma-70 region 2 BUM88_12965 PF04545 Sigma-70, region 4 BUM88_12970 PF04241 Protein of unknown function (DUF423) BUM88_12980 PF05690 Thiazole biosynthesis protein ThiG BUM88_12990 PF03883 Peroxide stress protein YaaA BUM88_13000 PF06956 Regulator of RNA terminal phosphate cyclase BUM88_13000 PF00158 Sigma-54 interaction domain BUM88_13005 PF00753 Metallo-beta-lactamase superfamily BUM88_13010 PF01139 tRNA-splicing ligase RtcB BUM88_13025 PF01137 RNA 3'-terminal phosphate cyclase BUM88_13025 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain BUM88_13030 PF07687 Peptidase dimerisation domain BUM88_13030 PF01546 Peptidase family M20/M25/M40 BUM88_13040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BUM88_13045 PF01817 Chorismate mutase type II BUM88_13045 PF01842 ACT domain BUM88_13045 PF00800 Prephenate dehydratase BUM88_13050 PF00756 Putative esterase BUM88_13060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_13060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_13060 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_13065 PF00375 Sodium:dicarboxylate symporter family BUM88_13075 PF00591 Glycosyl transferase family, a/b domain BUM88_13075 PF02885 Glycosyl transferase family, helical bundle domain BUM88_13085 PF07023 Protein of unknown function (DUF1315) BUM88_13090 PF01513 ATP-NAD kinase BUM88_13095 PF00912 Transglycosylase BUM88_13095 PF00905 Penicillin binding protein transpeptidase domain BUM88_13095 PF14814 Bifunctional transglycosylase second domain BUM88_13105 PF00293 NUDIX domain BUM88_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_13115 PF08521 Two-component sensor kinase N-terminal BUM88_13115 PF00512 His Kinase A (phospho-acceptor) domain BUM88_13120 PF00072 Response regulator receiver domain BUM88_13120 PF00486 Transcriptional regulatory protein, C terminal BUM88_13130 PF00437 Type II/IV secretion system protein BUM88_13140 PF01980 tRNA-methyltransferase O BUM88_13140 PF18389 TrmO C-terminal domain BUM88_13145 PF00175 Oxidoreductase NAD-binding domain BUM88_13145 PF00970 Oxidoreductase FAD-binding domain BUM88_13150 PF02567 Phenazine biosynthesis-like protein BUM88_13155 PF00155 Aminotransferase class I and II BUM88_13155 PF00392 Bacterial regulatory proteins, gntR family BUM88_13160 PF00893 Small Multidrug Resistance protein BUM88_13165 PF00005 ABC transporter BUM88_13170 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_13175 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_13180 PF00497 Bacterial extracellular solute-binding proteins, family 3 BUM88_13185 PF03466 LysR substrate binding domain BUM88_13185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_13195 PF13533 Biotin-lipoyl like BUM88_13200 PF00873 AcrB/AcrD/AcrF family BUM88_13205 PF02321 Outer membrane efflux protein BUM88_13210 PF00464 Serine hydroxymethyltransferase BUM88_13240 PF00005 ABC transporter BUM88_13245 PF01061 ABC-2 type transporter BUM88_13250 PF14489 QueF-like protein BUM88_13250 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BUM88_13260 PF01098 Cell cycle protein BUM88_13265 PF13406 Transglycosylase SLT domain BUM88_13270 PF05036 Sporulation related domain BUM88_13270 PF03330 Lytic transglycolase BUM88_13290 PF12833 Helix-turn-helix domain BUM88_13300 PF00889 Elongation factor TS BUM88_13305 PF00318 Ribosomal protein S2 BUM88_13310 PF00557 Metallopeptidase family M24 BUM88_13320 PF07690 Major Facilitator Superfamily BUM88_13330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BUM88_13330 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_13335 PF04055 Radical SAM superfamily BUM88_13340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_13340 PF09317 Domain of unknown function (DUF1974) BUM88_13340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_13345 PF02627 Carboxymuconolactone decarboxylase family BUM88_13355 PF05221 S-adenosyl-L-homocysteine hydrolase BUM88_13355 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BUM88_13360 PF02219 Methylenetetrahydrofolate reductase BUM88_13365 PF04452 RNA methyltransferase BUM88_13370 PF03707 Bacterial signalling protein N terminal repeat BUM88_13370 PF00563 EAL domain BUM88_13370 PF00990 Diguanylate cyclase, GGDEF domain BUM88_13375 PF01515 Phosphate acetyl/butaryl transferase BUM88_13375 PF03949 Malic enzyme, NAD binding domain BUM88_13375 PF00390 Malic enzyme, N-terminal domain BUM88_13380 PF12627 Probable RNA and SrmB- binding site of polymerase A BUM88_13380 PF01743 Poly A polymerase head domain BUM88_13385 PF13180 PDZ domain BUM88_13390 PF01784 NIF3 (NGG1p interacting factor 3) BUM88_13395 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BUM88_13395 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BUM88_13420 PF01040 UbiA prenyltransferase family BUM88_13425 PF04345 Chorismate lyase BUM88_13435 PF00854 POT family BUM88_13450 PF00117 Glutamine amidotransferase class-I BUM88_13455 PF00591 Glycosyl transferase family, a/b domain BUM88_13455 PF02885 Glycosyl transferase family, helical bundle domain BUM88_13460 PF00218 Indole-3-glycerol phosphate synthase BUM88_13475 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BUM88_13475 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BUM88_13480 PF01799 [2Fe-2S] binding domain BUM88_13480 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_13490 PF00144 Beta-lactamase BUM88_13505 PF05675 Protein of unknown function (DUF817) BUM88_13510 PF01208 Uroporphyrinogen decarboxylase (URO-D) BUM88_13525 PF17954 Quercetinase C-terminal cupin domain BUM88_13525 PF02678 Pirin BUM88_13535 PF13309 HTH domain BUM88_13535 PF08348 YheO-like PAS domain BUM88_13540 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_13545 PF02423 Ornithine cyclodeaminase/mu-crystallin family BUM88_13575 PF00313 'Cold-shock' DNA-binding domain BUM88_13595 PF04328 Selenoprotein, putative BUM88_13600 PF13722 5TM C-terminal transporter carbon starvation CstA BUM88_13600 PF02554 Carbon starvation protein CstA BUM88_13605 PF09285 Elongation factor P, C-terminal BUM88_13605 PF01132 Elongation factor P (EF-P) OB domain BUM88_13605 PF08207 Elongation factor P (EF-P) KOW-like domain BUM88_13610 PF04055 Radical SAM superfamily BUM88_13625 PF01197 Ribosomal protein L31 BUM88_13630 PF13593 SBF-like CPA transporter family (DUF4137) BUM88_13635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BUM88_13640 PF07690 Major Facilitator Superfamily BUM88_13645 PF13654 AAA domain BUM88_13645 PF05362 Lon protease (S16) C-terminal proteolytic domain BUM88_13650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_13650 PF03466 LysR substrate binding domain BUM88_13655 PF01476 LysM domain BUM88_13655 PF01551 Peptidase family M23 BUM88_13660 PF01975 Survival protein SurE BUM88_13675 PF07943 Penicillin-binding protein 5, C-terminal domain BUM88_13675 PF00768 D-alanyl-D-alanine carboxypeptidase BUM88_13680 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_13690 PF00293 NUDIX domain BUM88_13690 PF13344 Haloacid dehalogenase-like hydrolase BUM88_13700 PF04356 Protein of unknown function (DUF489) BUM88_13705 PF00206 Lyase BUM88_13705 PF08328 Adenylosuccinate lyase C-terminal BUM88_13720 PF08496 Peptidase family S49 N-terminal BUM88_13720 PF01343 Peptidase family S49 BUM88_13725 PF00005 ABC transporter BUM88_13730 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_13735 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_13740 PF12849 PBP superfamily domain BUM88_13745 PF00324 Amino acid permease BUM88_13750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BUM88_13750 PF00205 Thiamine pyrophosphate enzyme, central domain BUM88_13750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BUM88_13755 PF01037 Lrp/AsnC ligand binding domain BUM88_13760 PF00171 Aldehyde dehydrogenase family BUM88_13765 PF00282 Pyridoxal-dependent decarboxylase conserved domain BUM88_13770 PF00202 Aminotransferase class-III BUM88_13790 PF00487 Fatty acid desaturase BUM88_13795 PF00970 Oxidoreductase FAD-binding domain BUM88_13795 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_13795 PF00175 Oxidoreductase NAD-binding domain BUM88_13800 PF00440 Bacterial regulatory proteins, tetR family BUM88_13810 PF00176 SNF2 family N-terminal domain BUM88_13810 PF12137 RNA polymerase recycling family C-terminal BUM88_13810 PF18339 RapA N-terminal Tudor like domain 1 BUM88_13810 PF18337 RapA N-terminal Tudor like domain BUM88_13810 PF00271 Helicase conserved C-terminal domain BUM88_13815 PF00849 RNA pseudouridylate synthase BUM88_13825 PF00202 Aminotransferase class-III BUM88_13830 PF02581 Thiamine monophosphate synthase BUM88_13855 PF00675 Insulinase (Peptidase family M16) BUM88_13855 PF05193 Peptidase M16 inactive domain BUM88_13860 PF02567 Phenazine biosynthesis-like protein BUM88_13870 PF03466 LysR substrate binding domain BUM88_13870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_13875 PF06779 Uncharacterised MFS-type transporter YbfB BUM88_13885 PF00180 Isocitrate/isopropylmalate dehydrogenase BUM88_13890 PF00849 RNA pseudouridylate synthase BUM88_13895 PF03971 Monomeric isocitrate dehydrogenase BUM88_13905 PF00768 D-alanyl-D-alanine carboxypeptidase BUM88_13905 PF07943 Penicillin-binding protein 5, C-terminal domain BUM88_13910 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_13915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BUM88_13920 PF00875 DNA photolyase BUM88_13920 PF03441 FAD binding domain of DNA photolyase BUM88_13960 PF03060 Nitronate monooxygenase BUM88_13965 PF01207 Dihydrouridine synthase (Dus) BUM88_13970 PF07759 Protein of unknown function (DUF1615) BUM88_13980 PF01472 PUA domain BUM88_13980 PF00696 Amino acid kinase family BUM88_13985 PF01926 50S ribosome-binding GTPase BUM88_13985 PF01018 GTP1/OBG BUM88_14000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BUM88_14000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BUM88_14015 PF17757 UvrB interaction domain BUM88_14015 PF12344 Ultra-violet resistance protein B BUM88_14015 PF02151 UvrB/uvrC motif BUM88_14015 PF00271 Helicase conserved C-terminal domain BUM88_14015 PF04851 Type III restriction enzyme, res subunit BUM88_14025 PF17151 Periplasmic sensor domain BUM88_14025 PF00990 Diguanylate cyclase, GGDEF domain BUM88_14085 PF01040 UbiA prenyltransferase family BUM88_14090 PF04345 Chorismate lyase BUM88_14100 PF00854 POT family BUM88_14115 PF00117 Glutamine amidotransferase class-I BUM88_14120 PF02885 Glycosyl transferase family, helical bundle domain BUM88_14120 PF00591 Glycosyl transferase family, a/b domain BUM88_14125 PF00218 Indole-3-glycerol phosphate synthase BUM88_14140 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BUM88_14140 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BUM88_14145 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_14145 PF01799 [2Fe-2S] binding domain BUM88_14155 PF00144 Beta-lactamase BUM88_14170 PF05675 Protein of unknown function (DUF817) BUM88_14175 PF01208 Uroporphyrinogen decarboxylase (URO-D) BUM88_14190 PF17954 Quercetinase C-terminal cupin domain BUM88_14190 PF02678 Pirin BUM88_14200 PF08348 YheO-like PAS domain BUM88_14200 PF13309 HTH domain BUM88_14205 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_14210 PF02423 Ornithine cyclodeaminase/mu-crystallin family BUM88_14240 PF00313 'Cold-shock' DNA-binding domain BUM88_14260 PF04328 Selenoprotein, putative BUM88_14265 PF13722 5TM C-terminal transporter carbon starvation CstA BUM88_14265 PF02554 Carbon starvation protein CstA BUM88_14270 PF08207 Elongation factor P (EF-P) KOW-like domain BUM88_14270 PF01132 Elongation factor P (EF-P) OB domain BUM88_14270 PF09285 Elongation factor P, C-terminal BUM88_14275 PF04055 Radical SAM superfamily BUM88_14290 PF01197 Ribosomal protein L31 BUM88_14295 PF13593 SBF-like CPA transporter family (DUF4137) BUM88_14300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BUM88_14305 PF07690 Major Facilitator Superfamily BUM88_14310 PF05362 Lon protease (S16) C-terminal proteolytic domain BUM88_14310 PF13654 AAA domain BUM88_14315 PF03466 LysR substrate binding domain BUM88_14315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_14320 PF01551 Peptidase family M23 BUM88_14320 PF01476 LysM domain BUM88_14325 PF01975 Survival protein SurE BUM88_14340 PF00768 D-alanyl-D-alanine carboxypeptidase BUM88_14340 PF07943 Penicillin-binding protein 5, C-terminal domain BUM88_14345 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_14355 PF13344 Haloacid dehalogenase-like hydrolase BUM88_14355 PF00293 NUDIX domain BUM88_14365 PF04356 Protein of unknown function (DUF489) BUM88_14370 PF08328 Adenylosuccinate lyase C-terminal BUM88_14370 PF00206 Lyase BUM88_14385 PF01343 Peptidase family S49 BUM88_14385 PF08496 Peptidase family S49 N-terminal BUM88_14390 PF00005 ABC transporter BUM88_14395 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_14400 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_14405 PF12849 PBP superfamily domain BUM88_14410 PF00324 Amino acid permease BUM88_14415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BUM88_14415 PF00205 Thiamine pyrophosphate enzyme, central domain BUM88_14415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BUM88_14420 PF01037 Lrp/AsnC ligand binding domain BUM88_14425 PF00171 Aldehyde dehydrogenase family BUM88_14430 PF00282 Pyridoxal-dependent decarboxylase conserved domain BUM88_14435 PF00202 Aminotransferase class-III BUM88_14455 PF00487 Fatty acid desaturase BUM88_14460 PF00175 Oxidoreductase NAD-binding domain BUM88_14460 PF00111 2Fe-2S iron-sulfur cluster binding domain BUM88_14460 PF00970 Oxidoreductase FAD-binding domain BUM88_14465 PF00440 Bacterial regulatory proteins, tetR family BUM88_14475 PF18339 RapA N-terminal Tudor like domain 1 BUM88_14475 PF12137 RNA polymerase recycling family C-terminal BUM88_14475 PF18337 RapA N-terminal Tudor like domain BUM88_14475 PF00176 SNF2 family N-terminal domain BUM88_14475 PF00271 Helicase conserved C-terminal domain BUM88_14480 PF00849 RNA pseudouridylate synthase BUM88_14490 PF00202 Aminotransferase class-III BUM88_14495 PF02581 Thiamine monophosphate synthase BUM88_14520 PF05193 Peptidase M16 inactive domain BUM88_14520 PF00675 Insulinase (Peptidase family M16) BUM88_14525 PF02567 Phenazine biosynthesis-like protein BUM88_14535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_14535 PF03466 LysR substrate binding domain BUM88_14540 PF06779 Uncharacterised MFS-type transporter YbfB BUM88_14550 PF00180 Isocitrate/isopropylmalate dehydrogenase BUM88_14555 PF00849 RNA pseudouridylate synthase BUM88_14560 PF03971 Monomeric isocitrate dehydrogenase BUM88_14570 PF00768 D-alanyl-D-alanine carboxypeptidase BUM88_14570 PF07943 Penicillin-binding protein 5, C-terminal domain BUM88_14575 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_14580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BUM88_14585 PF03441 FAD binding domain of DNA photolyase BUM88_14585 PF00875 DNA photolyase BUM88_14625 PF03060 Nitronate monooxygenase BUM88_14630 PF01207 Dihydrouridine synthase (Dus) BUM88_14635 PF07759 Protein of unknown function (DUF1615) BUM88_14645 PF01472 PUA domain BUM88_14645 PF00696 Amino acid kinase family BUM88_14650 PF01018 GTP1/OBG BUM88_14650 PF01926 50S ribosome-binding GTPase BUM88_14665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BUM88_14665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BUM88_14680 PF12344 Ultra-violet resistance protein B BUM88_14680 PF00271 Helicase conserved C-terminal domain BUM88_14680 PF04851 Type III restriction enzyme, res subunit BUM88_14680 PF17757 UvrB interaction domain BUM88_14680 PF02151 UvrB/uvrC motif BUM88_14690 PF00990 Diguanylate cyclase, GGDEF domain BUM88_14690 PF17151 Periplasmic sensor domain BUM88_14730 PF00106 short chain dehydrogenase BUM88_14735 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) BUM88_14740 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BUM88_14745 PF11967 Recombination protein O N terminal BUM88_14745 PF02565 Recombination protein O C terminal BUM88_14755 PF07650 KH domain BUM88_14755 PF01926 50S ribosome-binding GTPase BUM88_14760 PF00035 Double-stranded RNA binding motif BUM88_14760 PF14622 Ribonuclease-III-like BUM88_14770 PF10502 Signal peptidase, peptidase S26 BUM88_14775 PF06421 GTP-binding protein LepA C-terminus BUM88_14775 PF03144 Elongation factor Tu domain 2 BUM88_14775 PF00679 Elongation factor G C-terminus BUM88_14775 PF00009 Elongation factor Tu GTP binding domain BUM88_14780 PF13302 Acetyltransferase (GNAT) domain BUM88_14790 PF13180 PDZ domain BUM88_14795 PF00890 FAD binding domain BUM88_14795 PF02910 Fumarate reductase flavoprotein C-term BUM88_14805 PF02223 Thymidylate kinase BUM88_14810 PF02618 YceG-like family BUM88_14815 PF01063 Amino-transferase class IV BUM88_14830 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_14835 PF00528 Binding-protein-dependent transport system inner membrane component BUM88_14840 PF12857 TOBE-like domain BUM88_14840 PF00005 ABC transporter BUM88_14845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_14845 PF03466 LysR substrate binding domain BUM88_14855 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_14855 PF14602 Hexapeptide repeat of succinyl-transferase BUM88_14855 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BUM88_14860 PF04055 Radical SAM superfamily BUM88_14865 PF06508 Queuosine biosynthesis protein QueC BUM88_14880 PF00578 AhpC/TSA family BUM88_14895 PF00293 NUDIX domain BUM88_14895 PF01467 Cytidylyltransferase-like BUM88_14900 PF00378 Enoyl-CoA hydratase/isomerase BUM88_14905 PF01784 NIF3 (NGG1p interacting factor 3) BUM88_14910 PF07690 Major Facilitator Superfamily BUM88_14915 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BUM88_14915 PF02769 AIR synthase related protein, C-terminal domain BUM88_14915 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BUM88_14920 PF01966 HD domain BUM88_14925 PF07499 RuvA, C-terminal domain BUM88_14925 PF01330 RuvA N terminal domain BUM88_14930 PF17864 RuvB AAA lid domain BUM88_14930 PF05491 RuvB C-terminal winged helix domain BUM88_14930 PF05496 Holliday junction DNA helicase RuvB P-loop domain BUM88_14935 PF01546 Peptidase family M20/M25/M40 BUM88_14935 PF07687 Peptidase dimerisation domain BUM88_14940 PF03061 Thioesterase superfamily BUM88_14945 PF01618 MotA/TolQ/ExbB proton channel family BUM88_14950 PF02472 Biopolymer transport protein ExbD/TolR BUM88_14960 PF07676 WD40-like Beta Propeller Repeat BUM88_14960 PF04052 TolB amino-terminal domain BUM88_14965 PF00691 OmpA family BUM88_14975 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BUM88_14980 PF08032 RNA 2'-O ribose methyltransferase substrate binding BUM88_14980 PF00588 SpoU rRNA Methylase family BUM88_15015 PF08299 Bacterial dnaA protein helix-turn-helix BUM88_15015 PF11638 DnaA N-terminal domain BUM88_15015 PF00308 Bacterial dnaA protein BUM88_15020 PF01594 AI-2E family transporter BUM88_15025 PF00586 AIR synthase related protein, N-terminal domain BUM88_15025 PF02769 AIR synthase related protein, C-terminal domain BUM88_15030 PF00551 Formyl transferase BUM88_15040 PF06965 Na+/H+ antiporter 1 BUM88_15040 PF01343 Peptidase family S49 BUM88_15050 PF03772 Competence protein BUM88_15050 PF00753 Metallo-beta-lactamase superfamily BUM88_15050 PF13567 Domain of unknown function (DUF4131) BUM88_15055 PF00005 ABC transporter BUM88_15060 PF02687 FtsX-like permease family BUM88_15060 PF12704 MacB-like periplasmic core domain BUM88_15065 PF00892 EamA-like transporter family BUM88_15070 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BUM88_15080 PF00266 Aminotransferase class-V BUM88_15090 PF13533 Biotin-lipoyl like BUM88_15105 PF00521 DNA gyrase/topoisomerase IV, subunit A BUM88_15105 PF03989 DNA gyrase C-terminal domain, beta-propeller BUM88_15110 PF00753 Metallo-beta-lactamase superfamily BUM88_15110 PF16123 Hydroxyacylglutathione hydrolase C-terminus BUM88_15120 PF01012 Electron transfer flavoprotein domain BUM88_15120 PF00766 Electron transfer flavoprotein FAD-binding domain BUM88_15125 PF01012 Electron transfer flavoprotein domain BUM88_15135 PF00589 Phage integrase family BUM88_15135 PF02899 Phage integrase, N-terminal SAM-like domain BUM88_15140 PF01810 LysE type translocator BUM88_15145 PF00561 alpha/beta hydrolase fold BUM88_15150 PF01678 Diaminopimelate epimerase BUM88_15155 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BUM88_15155 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BUM88_15165 PF00324 Amino acid permease BUM88_15170 PF18073 Rubredoxin metal binding domain BUM88_15180 PF00152 tRNA synthetases class II (D, K and N) BUM88_15185 PF11890 Domain of unknown function (DUF3410) BUM88_15185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BUM88_15185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BUM88_15195 PF02595 Glycerate kinase family BUM88_15210 PF00881 Nitroreductase family BUM88_15265 PF03180 NLPA lipoprotein BUM88_15270 PF00501 AMP-binding enzyme BUM88_15270 PF13193 AMP-binding enzyme C-terminal domain BUM88_15270 PF00668 Condensation domain BUM88_15270 PF00975 Thioesterase domain BUM88_15270 PF00550 Phosphopantetheine attachment site BUM88_15275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_15275 PF03466 LysR substrate binding domain BUM88_15295 PF03449 Transcription elongation factor, N-terminal BUM88_15295 PF01272 Transcription elongation factor, GreA/GreB, C-term BUM88_15300 PF01464 Transglycosylase SLT domain BUM88_15300 PF00497 Bacterial extracellular solute-binding proteins, family 3 BUM88_15310 PF01171 PP-loop family BUM88_15320 PF01464 Transglycosylase SLT domain BUM88_15325 PF01435 Peptidase family M48 BUM88_15335 PF00873 AcrB/AcrD/AcrF family BUM88_15340 PF03009 Glycerophosphoryl diester phosphodiesterase family BUM88_15345 PF00753 Metallo-beta-lactamase superfamily BUM88_15350 PF01219 Prokaryotic diacylglycerol kinase BUM88_15355 PF00118 TCP-1/cpn60 chaperonin family BUM88_15360 PF00166 Chaperonin 10 Kd subunit BUM88_15370 PF00149 Calcineurin-like phosphoesterase BUM88_15375 PF00781 Diacylglycerol kinase catalytic domain BUM88_15380 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain BUM88_15380 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain BUM88_15385 PF01266 FAD dependent oxidoreductase BUM88_15385 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BUM88_15390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BUM88_15390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BUM88_15395 PF00083 Sugar (and other) transporter BUM88_15410 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BUM88_15410 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BUM88_15425 PF09423 PhoD-like phosphatase BUM88_15425 PF16655 PhoD-like phosphatase, N-terminal domain BUM88_15445 PF00809 Pterin binding enzyme BUM88_15450 PF01434 Peptidase family M41 BUM88_15450 PF06480 FtsH Extracellular BUM88_15450 PF17862 AAA+ lid domain BUM88_15450 PF00004 ATPase family associated with various cellular activities (AAA) BUM88_15455 PF01728 FtsJ-like methyltransferase BUM88_15460 PF01985 CRS1 / YhbY (CRM) domain BUM88_15480 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BUM88_15480 PF00117 Glutamine amidotransferase class-I BUM88_15485 PF02142 MGS-like domain BUM88_15485 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BUM88_15485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BUM88_15490 PF03449 Transcription elongation factor, N-terminal BUM88_15490 PF01272 Transcription elongation factor, GreA/GreB, C-term BUM88_15495 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_15500 PF00582 Universal stress protein family BUM88_15505 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BUM88_15515 PF09587 Bacterial capsule synthesis protein PGA_cap BUM88_15535 PF00999 Sodium/hydrogen exchanger family BUM88_15540 PF04228 Putative neutral zinc metallopeptidase BUM88_15545 PF05661 Protein of unknown function (DUF808) BUM88_15550 PF00579 tRNA synthetases class I (W and Y) BUM88_15555 PF00549 CoA-ligase BUM88_15555 PF02629 CoA binding domain BUM88_15560 PF00549 CoA-ligase BUM88_15560 PF08442 ATP-grasp domain BUM88_15565 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_15565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BUM88_15570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BUM88_15570 PF00364 Biotin-requiring enzyme BUM88_15570 PF02817 e3 binding domain BUM88_15575 PF02779 Transketolase, pyrimidine binding domain BUM88_15575 PF16870 2-oxoglutarate dehydrogenase C-terminal BUM88_15575 PF00676 Dehydrogenase E1 component BUM88_15575 PF16078 2-oxoglutarate dehydrogenase N-terminus BUM88_15590 PF13085 2Fe-2S iron-sulfur cluster binding domain BUM88_15595 PF02910 Fumarate reductase flavoprotein C-term BUM88_15595 PF00890 FAD binding domain BUM88_15600 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BUM88_15605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BUM88_15615 PF00285 Citrate synthase, C-terminal domain BUM88_15640 PF04545 Sigma-70, region 4 BUM88_15640 PF03979 Sigma-70 factor, region 1.1 BUM88_15640 PF04542 Sigma-70 region 2 BUM88_15640 PF00140 Sigma-70 factor, region 1.2 BUM88_15640 PF04539 Sigma-70 region 3 BUM88_15640 PF04546 Sigma-70, non-essential region BUM88_15645 PF04359 Protein of unknown function (DUF493) BUM88_15650 PF03099 Biotin/lipoate A/B protein ligase family BUM88_15660 PF00465 Iron-containing alcohol dehydrogenase BUM88_15665 PF13520 Amino acid permease BUM88_15670 PF03358 NADPH-dependent FMN reductase BUM88_15700 PF00588 SpoU rRNA Methylase family BUM88_15705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BUM88_15705 PF14824 Sirohaem biosynthesis protein central BUM88_15705 PF10414 Sirohaem synthase dimerisation region BUM88_15710 PF02403 Seryl-tRNA synthetase N-terminal domain BUM88_15710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BUM88_15720 PF03548 Outer membrane lipoprotein carrier protein LolA BUM88_15725 PF01016 Ribosomal L27 protein BUM88_15730 PF00829 Ribosomal prokaryotic L21 protein BUM88_15735 PF00348 Polyprenyl synthetase BUM88_15745 PF01569 PAP2 superfamily BUM88_15750 PF00529 HlyD membrane-fusion protein of T1SS BUM88_15750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BUM88_15755 PF00873 AcrB/AcrD/AcrF family BUM88_15760 PF02321 Outer membrane efflux protein BUM88_15765 PF01906 Putative heavy-metal-binding BUM88_15770 PF01906 Putative heavy-metal-binding BUM88_15775 PF07690 Major Facilitator Superfamily BUM88_15790 PF10458 Valyl tRNA synthetase tRNA binding arm BUM88_15790 PF00133 tRNA synthetases class I (I, L, M and V) BUM88_15790 PF08264 Anticodon-binding domain of tRNA BUM88_15810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_15810 PF03466 LysR substrate binding domain BUM88_15815 PF00909 Ammonium Transporter Family BUM88_15825 PF00512 His Kinase A (phospho-acceptor) domain BUM88_15825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_15825 PF08521 Two-component sensor kinase N-terminal BUM88_15830 PF00072 Response regulator receiver domain BUM88_15830 PF00486 Transcriptional regulatory protein, C terminal BUM88_15835 PF08019 Phosphoethanolamine transferase EptA/EptB BUM88_15835 PF00884 Sulfatase BUM88_15860 PF01734 Patatin-like phospholipase BUM88_15870 PF01145 SPFH domain / Band 7 family BUM88_15875 PF04237 YjbR BUM88_15880 PF00348 Polyprenyl synthetase BUM88_15885 PF04303 PrpF protein BUM88_15890 PF00324 Amino acid permease BUM88_15940 PF01965 DJ-1/PfpI family BUM88_15945 PF16197 Ketoacyl-synthetase C-terminal extension BUM88_15945 PF00550 Phosphopantetheine attachment site BUM88_15945 PF08659 KR domain BUM88_15945 PF02801 Beta-ketoacyl synthase, C-terminal domain BUM88_15945 PF00109 Beta-ketoacyl synthase, N-terminal domain BUM88_15945 PF14765 Polyketide synthase dehydratase BUM88_15945 PF09277 Erythronolide synthase, docking BUM88_15945 PF08990 Erythronolide synthase docking BUM88_15945 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_15945 PF00698 Acyl transferase domain BUM88_15950 PF12833 Helix-turn-helix domain BUM88_15950 PF06719 AraC-type transcriptional regulator N-terminus BUM88_15955 PF02673 Bacitracin resistance protein BacA BUM88_15975 PF02525 Flavodoxin-like fold BUM88_15990 PF01507 Phosphoadenosine phosphosulfate reductase family BUM88_15995 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain BUM88_15995 PF06974 Protein of unknown function (DUF1298) BUM88_16005 PF00575 S1 RNA binding domain BUM88_16005 PF10150 Ribonuclease E/G family BUM88_16010 PF02545 Maf-like protein BUM88_16015 PF04093 rod shape-determining protein MreD BUM88_16020 PF04085 rod shape-determining protein MreC BUM88_16030 PF02686 Glu-tRNAGln amidotransferase C subunit BUM88_16035 PF01425 Amidase BUM88_16040 PF02637 GatB domain BUM88_16040 PF02934 GatB/GatE catalytic domain BUM88_16070 PF05992 SbmA/BacA-like family BUM88_16075 PF13291 ACT domain BUM88_16075 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_16080 PF01734 Patatin-like phospholipase BUM88_16085 PF01235 Sodium:alanine symporter family BUM88_16100 PF00881 Nitroreductase family BUM88_16105 PF07690 Major Facilitator Superfamily BUM88_16110 PF12805 FUSC-like inner membrane protein yccS BUM88_16120 PF00667 FAD binding domain BUM88_16120 PF00175 Oxidoreductase NAD-binding domain BUM88_16120 PF00258 Flavodoxin BUM88_16145 PF03734 L,D-transpeptidase catalytic domain BUM88_16145 PF17969 L,D-transpeptidase C-terminal domain BUM88_16150 PF04304 Protein of unknown function (DUF454) BUM88_16165 PF01546 Peptidase family M20/M25/M40 BUM88_16165 PF07687 Peptidase dimerisation domain BUM88_16175 PF01627 Hpt domain BUM88_16175 PF01584 CheW-like domain BUM88_16175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_16175 PF00072 Response regulator receiver domain BUM88_16180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BUM88_16180 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BUM88_16185 PF01584 CheW-like domain BUM88_16190 PF00072 Response regulator receiver domain BUM88_16195 PF00072 Response regulator receiver domain BUM88_16210 PF00873 AcrB/AcrD/AcrF family BUM88_16215 PF03129 Anticodon binding domain BUM88_16215 PF04073 Aminoacyl-tRNA editing domain BUM88_16215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BUM88_16220 PF07411 Domain of unknown function (DUF1508) BUM88_16225 PF08274 PhnA Zinc-Ribbon BUM88_16225 PF03831 PhnA domain BUM88_16230 PF04343 Protein of unknown function, DUF488 BUM88_16235 PF12697 Alpha/beta hydrolase family BUM88_16240 PF00881 Nitroreductase family BUM88_16245 PF00296 Luciferase-like monooxygenase BUM88_16250 PF00857 Isochorismatase family BUM88_16255 PF01042 Endoribonuclease L-PSP BUM88_16260 PF01613 Flavin reductase like domain BUM88_16265 PF00860 Permease family BUM88_16270 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BUM88_16270 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BUM88_16280 PF01571 Aminomethyltransferase folate-binding domain BUM88_16285 PF13098 Thioredoxin-like domain BUM88_16285 PF10411 Disulfide bond isomerase protein N-terminus BUM88_16300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BUM88_16305 PF07715 TonB-dependent Receptor Plug Domain BUM88_16305 PF00593 TonB dependent receptor BUM88_16310 PF02245 Methylpurine-DNA glycosylase (MPG) BUM88_16315 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BUM88_16315 PF06827 Zinc finger found in FPG and IleRS BUM88_16315 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BUM88_16330 PF01741 Large-conductance mechanosensitive channel, MscL BUM88_16340 PF00860 Permease family BUM88_16345 PF05175 Methyltransferase small domain BUM88_16345 PF08468 Methyltransferase small domain N-terminal BUM88_16350 PF00324 Amino acid permease BUM88_16355 PF01139 tRNA-splicing ligase RtcB BUM88_16360 PF13505 Outer membrane protein beta-barrel domain BUM88_16360 PF00691 OmpA family BUM88_16365 PF07963 Prokaryotic N-terminal methylation motif BUM88_16365 PF00114 Pilin (bacterial filament) BUM88_16370 PF02803 Thiolase, C-terminal domain BUM88_16370 PF00108 Thiolase, N-terminal domain BUM88_16380 PF00893 Small Multidrug Resistance protein BUM88_16390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BUM88_16390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BUM88_16395 PF01011 PQQ enzyme repeat BUM88_16400 PF04966 Carbohydrate-selective porin, OprB family BUM88_16405 PF02515 CoA-transferase family III BUM88_16410 PF12833 Helix-turn-helix domain BUM88_16410 PF02311 AraC-like ligand binding domain BUM88_16415 PF00108 Thiolase, N-terminal domain BUM88_16415 PF02803 Thiolase, C-terminal domain BUM88_16420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BUM88_16420 PF00378 Enoyl-CoA hydratase/isomerase BUM88_16420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BUM88_16435 PF13673 Acetyltransferase (GNAT) domain BUM88_16445 PF03006 Haemolysin-III related BUM88_16450 PF00083 Sugar (and other) transporter BUM88_16450 PF07690 Major Facilitator Superfamily BUM88_16460 PF07516 SecA Wing and Scaffold domain BUM88_16460 PF02810 SEC-C motif BUM88_16460 PF01043 SecA preprotein cross-linking domain BUM88_16460 PF07517 SecA DEAD-like domain BUM88_16465 PF00578 AhpC/TSA family BUM88_16465 PF10417 C-terminal domain of 1-Cys peroxiredoxin BUM88_16470 PF00753 Metallo-beta-lactamase superfamily BUM88_16490 PF02875 Mur ligase family, glutamate ligase domain BUM88_16490 PF08245 Mur ligase middle domain BUM88_16495 PF01039 Carboxyl transferase domain BUM88_16500 PF00290 Tryptophan synthase alpha chain BUM88_16525 PF00291 Pyridoxal-phosphate dependent enzyme BUM88_16530 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BUM88_16535 PF00593 TonB dependent receptor BUM88_16535 PF07715 TonB-dependent Receptor Plug Domain BUM88_16540 PF01923 Cobalamin adenosyltransferase BUM88_16560 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BUM88_16570 PF00072 Response regulator receiver domain BUM88_16570 PF00486 Transcriptional regulatory protein, C terminal BUM88_16575 PF00512 His Kinase A (phospho-acceptor) domain BUM88_16575 PF00672 HAMP domain BUM88_16575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_16585 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_16585 PF12806 Acetyl-CoA dehydrogenase C-terminal like BUM88_16585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_16585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_16590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_16590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_16590 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_16590 PF12806 Acetyl-CoA dehydrogenase C-terminal like BUM88_16595 PF03466 LysR substrate binding domain BUM88_16595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_16600 PF02798 Glutathione S-transferase, N-terminal domain BUM88_16600 PF00043 Glutathione S-transferase, C-terminal domain BUM88_16605 PF06146 Phosphate-starvation-inducible E BUM88_16625 PF00593 TonB dependent receptor BUM88_16625 PF07715 TonB-dependent Receptor Plug Domain BUM88_16635 PF02938 GAD domain BUM88_16635 PF01336 OB-fold nucleic acid binding domain BUM88_16635 PF00152 tRNA synthetases class II (D, K and N) BUM88_16640 PF17103 Stealth protein CR4, conserved region 4 BUM88_16640 PF11380 Stealth protein CR2, conserved region 2 BUM88_16640 PF17101 Stealth protein CR1, conserved region 1 BUM88_16665 PF13439 Glycosyltransferase Family 4 BUM88_16665 PF00534 Glycosyl transferases group 1 BUM88_16670 PF00535 Glycosyl transferase family 2 BUM88_16675 PF01522 Polysaccharide deacetylase BUM88_16690 PF01063 Amino-transferase class IV BUM88_16695 PF08335 GlnD PII-uridylyltransferase BUM88_16695 PF03710 Glutamate-ammonia ligase adenylyltransferase BUM88_16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_16700 PF00672 HAMP domain BUM88_16700 PF00512 His Kinase A (phospho-acceptor) domain BUM88_16700 PF01627 Hpt domain BUM88_16700 PF00072 Response regulator receiver domain BUM88_16700 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BUM88_16710 PF00664 ABC transporter transmembrane region BUM88_16710 PF00005 ABC transporter BUM88_16725 PF13356 Arm DNA-binding domain BUM88_16725 PF00589 Phage integrase family BUM88_16735 PF02547 Queuosine biosynthesis protein BUM88_16750 PF01702 Queuine tRNA-ribosyltransferase BUM88_16755 PF02699 Preprotein translocase subunit BUM88_16760 PF07549 SecD/SecF GG Motif BUM88_16760 PF13721 SecD export protein N-terminal TM region BUM88_16760 PF02355 Protein export membrane protein BUM88_16765 PF07549 SecD/SecF GG Motif BUM88_16765 PF02355 Protein export membrane protein BUM88_16770 PF04127 DNA / pantothenate metabolism flavoprotein BUM88_16770 PF02441 Flavoprotein BUM88_16775 PF04002 RadC-like JAB domain BUM88_16780 PF01062 Bestrophin, RFP-TM, chloride channel BUM88_16785 PF02811 PHP domain BUM88_16790 PF04279 Intracellular septation protein A BUM88_16795 PF03795 YCII-related domain BUM88_16805 PF01266 FAD dependent oxidoreductase BUM88_16805 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BUM88_16815 PF04461 Protein of unknown function (DUF520) BUM88_16825 PF03061 Thioesterase superfamily BUM88_16830 PF00085 Thioredoxin BUM88_16840 PF04273 Putative phosphatase (DUF442) BUM88_16840 PF00753 Metallo-beta-lactamase superfamily BUM88_16850 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_16850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BUM88_16890 PF13689 YfiR/HmsC-like BUM88_16895 PF17152 Periplasmic sensor domain BUM88_16895 PF00990 Diguanylate cyclase, GGDEF domain BUM88_16900 PF00691 OmpA family BUM88_16900 PF00223 Photosystem I psaA/psaB protein BUM88_16905 PF00149 Calcineurin-like phosphoesterase BUM88_16905 PF10518 TAT (twin-arginine translocation) pathway signal sequence BUM88_16910 PF13091 PLD-like domain BUM88_16920 PF01926 50S ribosome-binding GTPase BUM88_16920 PF13167 GTP-binding GTPase N-terminal BUM88_16920 PF16360 GTP-binding GTPase Middle Region BUM88_16940 PF00149 Calcineurin-like phosphoesterase BUM88_16945 PF00398 Ribosomal RNA adenine dimethylase BUM88_16950 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BUM88_16955 PF00572 Ribosomal protein L13 BUM88_16960 PF00380 Ribosomal protein S9/S16 BUM88_16965 PF13417 Glutathione S-transferase, N-terminal domain BUM88_16965 PF00043 Glutathione S-transferase, C-terminal domain BUM88_16970 PF04386 Stringent starvation protein B BUM88_16980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BUM88_16980 PF00364 Biotin-requiring enzyme BUM88_16980 PF00289 Biotin carboxylase, N-terminal domain BUM88_16980 PF02785 Biotin carboxylase C-terminal domain BUM88_16990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_16990 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_16990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_16995 PF01039 Carboxyl transferase domain BUM88_17010 PF17932 Tetracyclin repressor-like, C-terminal domain BUM88_17010 PF00440 Bacterial regulatory proteins, tetR family BUM88_17015 PF13302 Acetyltransferase (GNAT) domain BUM88_17020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_17020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_17020 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_17070 PF01066 CDP-alcohol phosphatidyltransferase BUM88_17075 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BUM88_17095 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BUM88_17095 PF00056 lactate/malate dehydrogenase, NAD binding domain BUM88_17105 PF01551 Peptidase family M23 BUM88_17105 PF10145 Phage-related minor tail protein BUM88_17105 PF01464 Transglycosylase SLT domain BUM88_17110 PF01938 TRAM domain BUM88_17110 PF00919 Uncharacterized protein family UPF0004 BUM88_17110 PF04055 Radical SAM superfamily BUM88_17115 PF02562 PhoH-like protein BUM88_17120 PF02130 Uncharacterized protein family UPF0054 BUM88_17145 PF03358 NADPH-dependent FMN reductase BUM88_17150 PF03631 Virulence factor BrkB BUM88_17155 PF01557 Fumarylacetoacetate (FAA) hydrolase family BUM88_17195 PF08206 Ribonuclease B OB domain BUM88_17195 PF00773 RNB domain BUM88_17195 PF00575 S1 RNA binding domain BUM88_17195 PF08461 Ribonuclease R winged-helix domain BUM88_17195 PF17876 Cold shock domain BUM88_17200 PF01432 Peptidase family M3 BUM88_17205 PF09526 Probable metal-binding protein (DUF2387) BUM88_17235 PF03937 Flavinator of succinate dehydrogenase BUM88_17240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_17240 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_17240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_17245 PF00743 Flavin-binding monooxygenase-like BUM88_17250 PF01196 Ribosomal protein L17 BUM88_17255 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BUM88_17255 PF01000 RNA polymerase Rpb3/RpoA insert domain BUM88_17255 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BUM88_17260 PF01479 S4 domain BUM88_17260 PF00163 Ribosomal protein S4/S9 N-terminal domain BUM88_17265 PF00411 Ribosomal protein S11 BUM88_17270 PF00416 Ribosomal protein S13/S18 BUM88_17275 PF00444 Ribosomal protein L36 BUM88_17280 PF00344 SecY translocase BUM88_17285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BUM88_17290 PF00327 Ribosomal protein L30p/L7e BUM88_17295 PF00333 Ribosomal protein S5, N-terminal domain BUM88_17295 PF03719 Ribosomal protein S5, C-terminal domain BUM88_17300 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BUM88_17305 PF00347 Ribosomal protein L6 BUM88_17310 PF00410 Ribosomal protein S8 BUM88_17315 PF00253 Ribosomal protein S14p/S29e BUM88_17320 PF00673 ribosomal L5P family C-terminus BUM88_17320 PF00281 Ribosomal protein L5 BUM88_17325 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BUM88_17325 PF00467 KOW motif BUM88_17330 PF00238 Ribosomal protein L14p/L23e BUM88_17335 PF00366 Ribosomal protein S17 BUM88_17340 PF00831 Ribosomal L29 protein BUM88_17345 PF00252 Ribosomal protein L16p/L10e BUM88_17350 PF00189 Ribosomal protein S3, C-terminal domain BUM88_17350 PF07650 KH domain BUM88_17355 PF00237 Ribosomal protein L22p/L17e BUM88_17360 PF00203 Ribosomal protein S19 BUM88_17365 PF00181 Ribosomal Proteins L2, RNA binding domain BUM88_17365 PF03947 Ribosomal Proteins L2, C-terminal domain BUM88_17370 PF00276 Ribosomal protein L23 BUM88_17375 PF00573 Ribosomal protein L4/L1 family BUM88_17380 PF00297 Ribosomal protein L3 BUM88_17385 PF00338 Ribosomal protein S10p/S20e BUM88_17390 PF00117 Glutamine amidotransferase class-I BUM88_17395 PF01053 Cys/Met metabolism PLP-dependent enzyme BUM88_17400 PF05872 Bacterial protein of unknown function (DUF853) BUM88_17405 PF00970 Oxidoreductase FAD-binding domain BUM88_17405 PF00175 Oxidoreductase NAD-binding domain BUM88_17405 PF00042 Globin BUM88_17410 PF02082 Transcriptional regulator BUM88_17415 PF01926 50S ribosome-binding GTPase BUM88_17425 PF00375 Sodium:dicarboxylate symporter family BUM88_17435 PF01553 Acyltransferase BUM88_17450 PF17191 RecG wedge domain BUM88_17450 PF00271 Helicase conserved C-terminal domain BUM88_17450 PF00270 DEAD/DEAH box helicase BUM88_17455 PF00156 Phosphoribosyl transferase domain BUM88_17460 PF00293 NUDIX domain BUM88_17465 PF03641 Possible lysine decarboxylase BUM88_17470 PF01544 CorA-like Mg2+ transporter protein BUM88_17490 PF02405 Permease MlaE BUM88_17495 PF00005 ABC transporter BUM88_17505 PF00270 DEAD/DEAH box helicase BUM88_17505 PF00271 Helicase conserved C-terminal domain BUM88_17510 PF00459 Inositol monophosphatase family BUM88_17515 PF02779 Transketolase, pyrimidine binding domain BUM88_17515 PF02780 Transketolase, C-terminal domain BUM88_17515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BUM88_17520 PF00925 GTP cyclohydrolase II BUM88_17525 PF01218 Coproporphyrinogen III oxidase BUM88_17530 PF01488 Shikimate / quinate 5-dehydrogenase BUM88_17530 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BUM88_17530 PF08501 Shikimate dehydrogenase substrate binding domain BUM88_17540 PF12806 Acetyl-CoA dehydrogenase C-terminal like BUM88_17540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BUM88_17540 PF02770 Acyl-CoA dehydrogenase, middle domain BUM88_17540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BUM88_17550 PF04024 PspC domain BUM88_17585 PF02091 Glycyl-tRNA synthetase alpha subunit BUM88_17590 PF02092 Glycyl-tRNA synthetase beta subunit BUM88_17590 PF05746 DALR anticodon binding domain BUM88_17600 PF00892 EamA-like transporter family BUM88_17605 PF03466 LysR substrate binding domain BUM88_17605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_17610 PF01177 Asp/Glu/Hydantoin racemase BUM88_17615 PF03466 LysR substrate binding domain BUM88_17615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_17645 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BUM88_17650 PF04996 Succinylarginine dihydrolase BUM88_17655 PF00171 Aldehyde dehydrogenase family BUM88_17660 PF04958 Arginine N-succinyltransferase beta subunit BUM88_17665 PF00202 Aminotransferase class-III BUM88_17670 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BUM88_17670 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BUM88_17675 PF00324 Amino acid permease BUM88_17685 PF08241 Methyltransferase domain BUM88_17705 PF13614 AAA domain BUM88_17710 PF01594 AI-2E family transporter BUM88_17715 PF00080 Copper/zinc superoxide dismutase (SODC) BUM88_17720 PF12805 FUSC-like inner membrane protein yccS BUM88_17730 PF07690 Major Facilitator Superfamily BUM88_17740 PF02525 Flavodoxin-like fold BUM88_17745 PF03992 Antibiotic biosynthesis monooxygenase BUM88_17760 PF02913 FAD linked oxidases, C-terminal domain BUM88_17760 PF01565 FAD binding domain BUM88_17765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BUM88_17765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BUM88_17770 PF00892 EamA-like transporter family BUM88_17775 PF00892 EamA-like transporter family BUM88_17785 PF01925 Sulfite exporter TauE/SafE BUM88_17790 PF01509 TruB family pseudouridylate synthase (N terminal domain) BUM88_17790 PF09157 Pseudouridine synthase II TruB, C-terminal BUM88_17790 PF16198 tRNA pseudouridylate synthase B C-terminal domain BUM88_17795 PF03280 Proteobacterial lipase chaperone protein BUM88_17800 PF00561 alpha/beta hydrolase fold BUM88_17805 PF01245 Ribosomal protein L19 BUM88_17810 PF01746 tRNA (Guanine-1)-methyltransferase BUM88_17815 PF05239 PRC-barrel domain BUM88_17815 PF01782 RimM N-terminal domain BUM88_17820 PF00886 Ribosomal protein S16 BUM88_17830 PF00114 Pilin (bacterial filament) BUM88_17830 PF07963 Prokaryotic N-terminal methylation motif BUM88_17855 PF00114 Pilin (bacterial filament) BUM88_17855 PF07963 Prokaryotic N-terminal methylation motif BUM88_17860 PF02401 LytB protein BUM88_17865 PF00625 Guanylate kinase BUM88_17870 PF01192 RNA polymerase Rpb6 BUM88_17875 PF04607 Region found in RelA / SpoT proteins BUM88_17875 PF02824 TGS domain BUM88_17875 PF13291 ACT domain BUM88_17880 PF01042 Endoribonuclease L-PSP BUM88_17885 PF04324 BFD-like [2Fe-2S] binding domain BUM88_17890 PF00210 Ferritin-like domain BUM88_17895 PF15864 Protein glycosylation ligase BUM88_17895 PF04932 O-Antigen ligase BUM88_17895 PF11846 Virulence factor membrane-bound polymerase, C-terminal BUM88_17900 PF07963 Prokaryotic N-terminal methylation motif BUM88_17900 PF00114 Pilin (bacterial filament) BUM88_17910 PF04536 TPM domain BUM88_17915 PF04011 LemA family BUM88_17925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BUM88_17925 PF07992 Pyridine nucleotide-disulphide oxidoreductase BUM88_17930 PF01493 GXGXG motif BUM88_17930 PF01645 Conserved region in glutamate synthase BUM88_17930 PF04898 Glutamate synthase central domain BUM88_17930 PF00310 Glutamine amidotransferases class-II BUM88_17940 PF01761 3-dehydroquinate synthase BUM88_17945 PF01202 Shikimate kinase BUM88_17950 PF03958 Bacterial type II/III secretion system short domain BUM88_17950 PF00263 Bacterial type II and III secretion system protein BUM88_17950 PF07660 Secretin and TonB N terminus short domain BUM88_17950 PF11741 AMIN domain BUM88_17975 PF00905 Penicillin binding protein transpeptidase domain BUM88_17975 PF17092 Penicillin-binding protein OB-like domain BUM88_17975 PF00912 Transglycosylase BUM88_17980 PF13847 Methyltransferase domain BUM88_17990 PF00953 Glycosyl transferase family 4 BUM88_17995 PF08245 Mur ligase middle domain BUM88_17995 PF01225 Mur ligase family, catalytic domain BUM88_17995 PF02875 Mur ligase family, glutamate ligase domain BUM88_18000 PF08245 Mur ligase middle domain BUM88_18000 PF01225 Mur ligase family, catalytic domain BUM88_18000 PF02875 Mur ligase family, glutamate ligase domain BUM88_18005 PF00905 Penicillin binding protein transpeptidase domain BUM88_18005 PF03717 Penicillin-binding Protein dimerisation domain BUM88_18015 PF01795 MraW methylase family BUM88_18030 PF00749 tRNA synthetases class I (E and Q), catalytic domain BUM88_18045 PF00324 Amino acid permease BUM88_18070 PF01545 Cation efflux family BUM88_18075 PF00873 AcrB/AcrD/AcrF family BUM88_18080 PF00529 HlyD membrane-fusion protein of T1SS BUM88_18080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BUM88_18100 PF00005 ABC transporter BUM88_18100 PF12848 ABC transporter BUM88_18105 PF01053 Cys/Met metabolism PLP-dependent enzyme BUM88_18110 PF00106 short chain dehydrogenase BUM88_18115 PF00916 Sulfate permease family BUM88_18115 PF01740 STAS domain BUM88_18125 PF09371 Tex-like protein N-terminal domain BUM88_18125 PF16921 Tex protein YqgF-like domain BUM88_18125 PF17674 HHH domain BUM88_18125 PF00575 S1 RNA binding domain BUM88_18130 PF00486 Transcriptional regulatory protein, C terminal BUM88_18130 PF00072 Response regulator receiver domain BUM88_18135 PF00512 His Kinase A (phospho-acceptor) domain BUM88_18135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_18135 PF00672 HAMP domain BUM88_18145 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BUM88_18145 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BUM88_18150 PF00583 Acetyltransferase (GNAT) family BUM88_18170 PF00475 Imidazoleglycerol-phosphate dehydratase BUM88_18175 PF00117 Glutamine amidotransferase class-I BUM88_18190 PF00977 Histidine biosynthesis protein BUM88_18205 PF03992 Antibiotic biosynthesis monooxygenase BUM88_18220 PF01636 Phosphotransferase enzyme family BUM88_18225 PF00977 Histidine biosynthesis protein BUM88_18240 PF00230 Major intrinsic protein BUM88_18270 PF02705 K+ potassium transporter BUM88_18280 PF13356 Arm DNA-binding domain BUM88_18280 PF00589 Phage integrase family BUM88_18335 PF12833 Helix-turn-helix domain BUM88_18370 PF02525 Flavodoxin-like fold BUM88_18375 PF01638 HxlR-like helix-turn-helix BUM88_18410 PF02311 AraC-like ligand binding domain BUM88_18410 PF12833 Helix-turn-helix domain BUM88_18415 PF00248 Aldo/keto reductase family BUM88_18435 PF00206 Lyase BUM88_18435 PF02655 ATP-grasp domain BUM88_18455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_18455 PF03466 LysR substrate binding domain BUM88_18460 PF07690 Major Facilitator Superfamily BUM88_18490 PF01593 Flavin containing amine oxidoreductase BUM88_18500 PF05726 Pirin C-terminal cupin domain BUM88_18500 PF02678 Pirin BUM88_18505 PF00857 Isochorismatase family BUM88_18510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_18515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_18515 PF03466 LysR substrate binding domain BUM88_18520 PF00857 Isochorismatase family BUM88_18525 PF00171 Aldehyde dehydrogenase family BUM88_18530 PF00202 Aminotransferase class-III BUM88_18535 PF00392 Bacterial regulatory proteins, gntR family BUM88_18535 PF00155 Aminotransferase class I and II BUM88_18540 PF00324 Amino acid permease BUM88_18550 PF03591 AzlC protein BUM88_18560 PF00664 ABC transporter transmembrane region BUM88_18560 PF00005 ABC transporter BUM88_18600 PF00436 Single-strand binding protein family BUM88_18605 PF07690 Major Facilitator Superfamily BUM88_18615 PF02581 Thiamine monophosphate synthase BUM88_18615 PF03070 TENA/THI-4/PQQC family BUM88_18615 PF08543 Phosphomethylpyrimidine kinase BUM88_18620 PF00376 MerR family regulatory protein BUM88_18620 PF09278 MerR, DNA binding BUM88_18625 PF00106 short chain dehydrogenase BUM88_18630 PF06942 GlpM protein BUM88_18640 PF00107 Zinc-binding dehydrogenase BUM88_18640 PF14765 Polyketide synthase dehydratase BUM88_18640 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_18640 PF16197 Ketoacyl-synthetase C-terminal extension BUM88_18640 PF00550 Phosphopantetheine attachment site BUM88_18640 PF00109 Beta-ketoacyl synthase, N-terminal domain BUM88_18640 PF00698 Acyl transferase domain BUM88_18640 PF08659 KR domain BUM88_18640 PF02801 Beta-ketoacyl synthase, C-terminal domain BUM88_18645 PF00440 Bacterial regulatory proteins, tetR family BUM88_18645 PF16925 Tetracyclin repressor-like, C-terminal domain BUM88_18650 PF17760 UvrA interaction domain BUM88_18650 PF17755 UvrA DNA-binding domain BUM88_18650 PF00005 ABC transporter BUM88_18655 PF00990 Diguanylate cyclase, GGDEF domain BUM88_18655 PF17158 Membrane-associated sensor, integral membrane domain BUM88_18665 PF02028 BCCT, betaine/carnitine/choline family transporter BUM88_18675 PF00474 Sodium:solute symporter family BUM88_18680 PF04341 Protein of unknown function, DUF485 BUM88_18685 PF01627 Hpt domain BUM88_18685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_18685 PF00072 Response regulator receiver domain BUM88_18685 PF00672 HAMP domain BUM88_18685 PF00512 His Kinase A (phospho-acceptor) domain BUM88_18695 PF00196 Bacterial regulatory proteins, luxR family BUM88_18695 PF00072 Response regulator receiver domain BUM88_18700 PF03358 NADPH-dependent FMN reductase BUM88_18705 PF00296 Luciferase-like monooxygenase BUM88_18710 PF01037 Lrp/AsnC ligand binding domain BUM88_18715 PF00857 Isochorismatase family BUM88_18720 PF16177 Acetyl-coenzyme A synthetase N-terminus BUM88_18720 PF00501 AMP-binding enzyme BUM88_18720 PF13193 AMP-binding enzyme C-terminal domain BUM88_18730 PF05552 Conserved TM helix BUM88_18730 PF00924 Mechanosensitive ion channel BUM88_18735 PF04452 RNA methyltransferase BUM88_18740 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BUM88_18745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BUM88_18755 PF00472 RF-1 domain BUM88_18755 PF03462 PCRF domain BUM88_18770 PF17768 RecJ OB domain BUM88_18770 PF01368 DHH family BUM88_18770 PF02272 DHHA1 domain BUM88_18775 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BUM88_18775 PF01243 Pyridoxamine 5'-phosphate oxidase BUM88_18780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BUM88_18780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BUM88_18780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BUM88_18780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BUM88_18785 PF00478 IMP dehydrogenase / GMP reductase domain BUM88_18785 PF00571 CBS domain BUM88_18790 PF00258 Flavodoxin BUM88_18790 PF01613 Flavin reductase like domain BUM88_18795 PF00593 TonB dependent receptor BUM88_18795 PF07715 TonB-dependent Receptor Plug Domain BUM88_18800 PF01169 Uncharacterized protein family UPF0016 BUM88_18810 PF00364 Biotin-requiring enzyme BUM88_18810 PF02817 e3 binding domain BUM88_18810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BUM88_18815 PF17831 Pyruvate dehydrogenase E1 component middle domain BUM88_18815 PF00456 Transketolase, thiamine diphosphate binding domain BUM88_18820 PF01551 Peptidase family M23 BUM88_18830 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BUM88_18835 PF00091 Tubulin/FtsZ family, GTPase domain BUM88_18835 PF12327 FtsZ family, C-terminal domain BUM88_18840 PF02491 SHS2 domain inserted in FTSA BUM88_18845 PF08478 POTRA domain, FtsQ-type BUM88_18845 PF03799 Cell division protein FtsQ BUM88_18850 PF01820 D-ala D-ala ligase N-terminus BUM88_18850 PF07478 D-ala D-ala ligase C-terminus BUM88_18855 PF01225 Mur ligase family, catalytic domain BUM88_18855 PF02875 Mur ligase family, glutamate ligase domain BUM88_18855 PF08245 Mur ligase middle domain BUM88_18860 PF04101 Glycosyltransferase family 28 C-terminal domain BUM88_18860 PF03033 Glycosyltransferase family 28 N-terminal domain BUM88_18865 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BUM88_18865 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BUM88_18875 PF00593 TonB dependent receptor BUM88_18875 PF07715 TonB-dependent Receptor Plug Domain BUM88_18880 PF13673 Acetyltransferase (GNAT) domain BUM88_18885 PF00156 Phosphoribosyl transferase domain BUM88_18890 PF03372 Endonuclease/Exonuclease/phosphatase family BUM88_18895 PF03960 ArsC family BUM88_18905 PF07859 alpha/beta hydrolase fold BUM88_18910 PF00990 Diguanylate cyclase, GGDEF domain BUM88_18910 PF07694 5TMR of 5TMR-LYT BUM88_18915 PF11412 Disulphide bond corrector protein DsbC BUM88_18915 PF02683 Cytochrome C biogenesis protein transmembrane region BUM88_18945 PF00576 HIUase/Transthyretin family BUM88_18950 PF00860 Permease family BUM88_18960 PF01494 FAD binding domain BUM88_18965 PF03561 Allantoicase repeat BUM88_18970 PF04115 Ureidoglycolate lyase BUM88_18975 PF00204 DNA gyrase B BUM88_18975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_18975 PF01751 Toprim domain BUM88_18975 PF00986 DNA gyrase B subunit, carboxyl terminus BUM88_18980 PF05728 Uncharacterised protein family (UPF0227) BUM88_19005 PF04717 Type VI secretion system, phage-baseplate injector BUM88_19010 PF02600 Disulfide bond formation protein DsbB BUM88_19015 PF04262 Glutamate-cysteine ligase BUM88_19030 PF04286 Protein of unknown function (DUF445) BUM88_19035 PF00155 Aminotransferase class I and II BUM88_19040 PF01554 MatE BUM88_19045 PF00106 short chain dehydrogenase BUM88_19055 PF00486 Transcriptional regulatory protein, C terminal BUM88_19055 PF00072 Response regulator receiver domain BUM88_19060 PF00512 His Kinase A (phospho-acceptor) domain BUM88_19060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_19060 PF00989 PAS fold BUM88_19060 PF11808 Phosphate regulon sensor protein PhoR BUM88_19075 PF12728 Helix-turn-helix domain BUM88_19075 PF12727 PBP superfamily domain BUM88_19085 PF03069 Acetamidase/Formamidase family BUM88_19090 PF02666 Phosphatidylserine decarboxylase BUM88_19095 PF00581 Rhodanese-like domain BUM88_19100 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BUM88_19100 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BUM88_19105 PF02580 D-Tyr-tRNA(Tyr) deacylase BUM88_19135 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BUM88_19135 PF00925 GTP cyclohydrolase II BUM88_19140 PF00885 6,7-dimethyl-8-ribityllumazine synthase BUM88_19145 PF01029 NusB family BUM88_19150 PF00586 AIR synthase related protein, N-terminal domain BUM88_19150 PF02769 AIR synthase related protein, C-terminal domain BUM88_19155 PF04608 Phosphatidylglycerophosphatase A BUM88_19160 PF14602 Hexapeptide repeat of succinyl-transferase BUM88_19160 PF00132 Bacterial transferase hexapeptide (six repeats) BUM88_19160 PF12804 MobA-like NTP transferase domain BUM88_19165 PF01380 SIS domain BUM88_19180 PF01177 Asp/Glu/Hydantoin racemase BUM88_19190 PF00491 Arginase family BUM88_19195 PF01979 Amidohydrolase family BUM88_19200 PF00324 Amino acid permease BUM88_19205 PF00221 Aromatic amino acid lyase BUM88_19210 PF17392 Urocanase C-terminal domain BUM88_19210 PF01175 Urocanase Rossmann-like domain BUM88_19210 PF17391 Urocanase N-terminal domain BUM88_19215 PF05962 HutD BUM88_19220 PF00392 Bacterial regulatory proteins, gntR family BUM88_19220 PF07702 UTRA domain BUM88_19230 PF07683 Cobalamin synthesis protein cobW C-terminal domain BUM88_19230 PF02492 CobW/HypB/UreG, nucleotide-binding domain BUM88_19240 PF00324 Amino acid permease BUM88_19250 PF14497 Glutathione S-transferase, C-terminal domain BUM88_19250 PF02798 Glutathione S-transferase, N-terminal domain BUM88_19255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BUM88_19265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BUM88_19270 PF04463 Protein of unknown function (DUF523) BUM88_19275 PF01554 MatE BUM88_19280 PF01758 Sodium Bile acid symporter family BUM88_19285 PF00857 Isochorismatase family BUM88_19290 PF00701 Dihydrodipicolinate synthetase family BUM88_19300 PF01259 SAICAR synthetase BUM88_19310 PF01226 Formate/nitrite transporter BUM88_19315 PF16193 AAA C-terminal domain BUM88_19315 PF12002 MgsA AAA+ ATPase C terminal BUM88_19315 PF00004 ATPase family associated with various cellular activities (AAA) BUM88_19320 PF07995 Glucose / Sorbosone dehydrogenase BUM88_19325 PF03692 Putative zinc- or iron-chelating domain BUM88_19330 PF07043 Protein of unknown function (DUF1328) BUM88_19345 PF00730 HhH-GPD superfamily base excision DNA repair protein BUM88_19345 PF00633 Helix-hairpin-helix motif BUM88_19345 PF10576 Iron-sulfur binding domain of endonuclease III BUM88_19345 PF14815 NUDIX domain BUM88_19360 PF03352 Methyladenine glycosylase BUM88_19365 PF08240 Alcohol dehydrogenase GroES-like domain BUM88_19365 PF00107 Zinc-binding dehydrogenase BUM88_19370 PF00392 Bacterial regulatory proteins, gntR family BUM88_19370 PF00155 Aminotransferase class I and II BUM88_19385 PF03466 LysR substrate binding domain BUM88_19385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BUM88_19390 PF00248 Aldo/keto reductase family BUM88_19395 PF07690 Major Facilitator Superfamily BUM88_19405 PF05173 Dihydrodipicolinate reductase, C-terminus BUM88_19405 PF01113 Dihydrodipicolinate reductase, N-terminus BUM88_19415 PF00226 DnaJ domain BUM88_19415 PF00684 DnaJ central domain BUM88_19415 PF01556 DnaJ C terminal domain BUM88_19425 PF00873 AcrB/AcrD/AcrF family BUM88_19430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BUM88_19435 PF08361 MAATS-type transcriptional repressor, C-terminal region BUM88_19435 PF00440 Bacterial regulatory proteins, tetR family BUM88_19440 PF00311 Phosphoenolpyruvate carboxylase BUM88_19445 PF00860 Permease family BUM88_19465 PF00920 Dehydratase family BUM88_19470 PF02911 Formyl transferase, C-terminal domain BUM88_19470 PF00551 Formyl transferase BUM88_19475 PF01189 16S rRNA methyltransferase RsmB/F BUM88_19475 PF01029 NusB family BUM88_19485 PF00209 Sodium:neurotransmitter symporter family BUM88_19535 PF00579 tRNA synthetases class I (W and Y) BUM88_19540 PF03702 Anhydro-N-acetylmuramic acid kinase BUM88_19545 PF00561 alpha/beta hydrolase fold BUM88_19550 PF01521 Iron-sulphur cluster biosynthesis BUM88_19575 PF12848 ABC transporter BUM88_19575 PF00005 ABC transporter BUM88_19590 PF18053 DNA gyrase B subunit insert domain BUM88_19590 PF01751 Toprim domain BUM88_19590 PF00986 DNA gyrase B subunit, carboxyl terminus BUM88_19590 PF00204 DNA gyrase B BUM88_19590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BUM88_19595 PF02463 RecF/RecN/SMC N terminal domain BUM88_19600 PF02768 DNA polymerase III beta subunit, C-terminal domain BUM88_19600 PF00712 DNA polymerase III beta subunit, N-terminal domain BUM88_19600 PF02767 DNA polymerase III beta subunit, central domain BUM88_19605 PF08299 Bacterial dnaA protein helix-turn-helix BUM88_19605 PF11638 DnaA N-terminal domain BUM88_19605 PF00308 Bacterial dnaA protein BUM88_19610 PF00468 Ribosomal protein L34 BUM88_19615 PF00825 Ribonuclease P BUM88_19620 PF01809 Putative membrane protein insertion efficiency factor BUM88_19625 PF02096 60Kd inner membrane protein BUM88_19625 PF14849 YidC periplasmic domain BUM88_19630 PF01926 50S ribosome-binding GTPase BUM88_19630 PF12631 MnmE helical domain BUM88_19630 PF10396 GTP-binding protein TrmE N-terminus BUM88_19635 PF02583 Metal-sensitive transcriptional repressor BUM88_19640 PF01545 Cation efflux family BUM88_19640 PF16916 Dimerisation domain of Zinc Transporter BUM88_19645 PF10411 Disulfide bond isomerase protein N-terminus BUM88_19645 PF13098 Thioredoxin-like domain BUM88_19655 PF00156 Phosphoribosyl transferase domain BUM88_19660 PF01979 Amidohydrolase family BUM88_19665 PF00355 Rieske [2Fe-2S] domain BUM88_19670 PF03738 Glutathionylspermidine synthase preATP-grasp BUM88_19685 PF03741 Integral membrane protein TerC family BUM88_19690 PF01569 PAP2 superfamily BUM88_19700 PF02875 Mur ligase family, glutamate ligase domain BUM88_19700 PF08245 Mur ligase middle domain BUM88_19700 PF01225 Mur ligase family, catalytic domain BUM88_19710 PF00731 AIR carboxylase BUM88_19715 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BUM88_19715 PF02222 ATP-grasp domain BUM88_19720 PF13406 Transglycosylase SLT domain BUM88_19745 PF00012 Hsp70 protein BUM88_19750 PF01025 GrpE BUM88_19775 PF07859 alpha/beta hydrolase fold BUM88_19780 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD