BUM88_00005 SM00248 ankyrin repeats BUM88_00030 SM00904 Riboflavin kinase BUM88_00050 SM00382 ATPases associated with a variety of cellular activities BUM88_00065 SM00062 Bacterial periplasmic substrate-binding proteins BUM88_00070 SM00062 Bacterial periplasmic substrate-binding proteins BUM88_00155 SM00644 BUM88_00155 BUM88_00180 SM00226 Low molecular weight phosphatase family BUM88_00190 SM00984 UDP binding domain BUM88_00200 SM00984 UDP binding domain BUM88_00225 SM00829 Enoylreductase BUM88_00265 SM00984 UDP binding domain BUM88_00290 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_00290 SM00895 BUM88_00290 BUM88_00310 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_00310 SM00895 BUM88_00310 BUM88_00330 SM00382 ATPases associated with a variety of cellular activities BUM88_00380 SM00671 Sel1-like repeats. BUM88_00450 SM00344 helix_turn_helix ASNC type BUM88_00460 SM01005 Alanine racemase, C-terminal domain BUM88_00530 SM00421 helix_turn_helix, Lux Regulon BUM88_00545 SM00823 Phosphopantetheine attachment site BUM88_00545 SM01294 BUM88_00545 BUM88_00550 SM00823 Phosphopantetheine attachment site BUM88_00550 SM00824 Thioesterase BUM88_00660 SM00836 DALR anticodon binding domain BUM88_00660 SM01016 Arginyl tRNA synthetase N terminal dom BUM88_00665 SM00919 Malic enzyme, NAD binding domain BUM88_00665 SM01274 BUM88_00665 BUM88_00685 SM00382 ATPases associated with a variety of cellular activities BUM88_00735 SM00382 ATPases associated with a variety of cellular activities BUM88_00760 SM00342 helix_turn_helix, arabinose operon control protein BUM88_00880 SM00422 helix_turn_helix, mercury resistance BUM88_00890 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_00915 SM00641 Glycosyl hydrolases family 25 BUM88_00930 SM01091 Transporter associated domain BUM88_00950 SM00434 DNA Topoisomerase IV BUM88_01000 SM00382 ATPases associated with a variety of cellular activities BUM88_01010 SM00938 Nitrogen regulatory protein P-II BUM88_01075 SM00245 tail specific protease BUM88_01080 SM00382 ATPases associated with a variety of cellular activities BUM88_01080 SM00448 cheY-homologous receiver domain BUM88_01085 SM00091 PAS domain BUM88_01085 SM00387 Histidine kinase-like ATPases BUM88_01085 SM00388 His Kinase A (phosphoacceptor) domain BUM88_01090 SM00421 helix_turn_helix, Lux Regulon BUM88_01090 SM00448 cheY-homologous receiver domain BUM88_01120 SM00899 BUM88_01120 BUM88_01215 SM00448 cheY-homologous receiver domain BUM88_01215 SM00850 LytTr DNA-binding domain BUM88_01245 SM00528 Domain in histone-like proteins of HNS family BUM88_01255 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BUM88_01265 SM00240 Forkhead associated domain BUM88_01315 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BUM88_01315 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BUM88_01320 SM00649 Ribosomal protein L11/L12 BUM88_01350 SM00663 RNA polymerase I subunit A N-terminus BUM88_01390 SM00387 Histidine kinase-like ATPases BUM88_01415 SM00422 helix_turn_helix, mercury resistance BUM88_01475 SM00465 GIY-YIG type nucleases (URI domain) BUM88_01490 SM00342 helix_turn_helix, arabinose operon control protein BUM88_01500 SM00346 helix_turn_helix isocitrate lyase regulation BUM88_01525 SM00732 Likely ribonuclease with RNase H fold. BUM88_01550 SM00967 RNA 2'-O ribose methyltransferase substrate binding BUM88_01610 SM00316 Ribosomal protein S1-like RNA-binding domain BUM88_01725 SM00382 ATPases associated with a variety of cellular activities BUM88_01735 SM01387 BUM88_01735 BUM88_01740 SM00316 Ribosomal protein S1-like RNA-binding domain BUM88_01740 SM00322 K homology RNA-binding domain BUM88_01755 SM00271 DnaJ molecular chaperone homology domain BUM88_01775 SM00487 DEAD-like helicases superfamily BUM88_01775 SM00490 helicase superfamily c-terminal domain BUM88_01810 SM00116 Domain in cystathionine beta-synthase and other proteins. BUM88_01810 SM01091 Transporter associated domain BUM88_01850 SM00849 Metallo-beta-lactamase superfamily BUM88_01920 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_01950 SM00316 Ribosomal protein S1-like RNA-binding domain BUM88_01960 SM00363 S4 RNA-binding domain BUM88_02000 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BUM88_02055 SM01329 BUM88_02055 BUM88_02070 SM00316 Ribosomal protein S1-like RNA-binding domain BUM88_02075 SM00342 helix_turn_helix, arabinose operon control protein BUM88_02085 SM00870 BUM88_02085 BUM88_02100 SM00859 Semialdehyde dehydrogenase, NAD binding domain BUM88_02130 SM00382 ATPases associated with a variety of cellular activities BUM88_02140 SM00829 Enoylreductase BUM88_02155 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BUM88_02155 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BUM88_02155 SM00493 BUM88_02155 BUM88_02175 SM00360 RNA recognition motif BUM88_02315 SM00671 Sel1-like repeats. BUM88_02330 SM00917 LeuA allosteric (dimerisation) domain BUM88_02335 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BUM88_02355 SM00382 ATPases associated with a variety of cellular activities BUM88_02355 SM00994 ClpX C4-type zinc finger BUM88_02355 SM01086 C-terminal, D2-small domain, of ClpB protein BUM88_02435 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BUM88_02435 SM00245 tail specific protease BUM88_02445 SM00014 Acid phosphatase homologues BUM88_02455 SM00562 BUM88_02455 BUM88_02460 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_02465 SM00028 Tetratricopeptide repeats BUM88_02490 SM00564 beta-propeller repeat BUM88_02505 SM00563 Phosphate acyltransferases BUM88_02570 SM00825 Beta-ketoacyl synthase BUM88_02580 SM00822 BUM88_02580 BUM88_02585 SM00825 Beta-ketoacyl synthase BUM88_02610 SM00450 Rhodanese Homology Domain BUM88_02620 SM00479 BUM88_02620 BUM88_02640 SM00382 ATPases associated with a variety of cellular activities BUM88_02680 SM00052 Putative diguanylate phosphodiesterase BUM88_02680 SM00267 diguanylate cyclase BUM88_02700 SM01236 BUM88_02700 BUM88_02775 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BUM88_02775 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BUM88_02820 SM00073 Histidine Phosphotransfer domain BUM88_02820 SM00387 Histidine kinase-like ATPases BUM88_02820 SM00388 His Kinase A (phosphoacceptor) domain BUM88_02820 SM00448 cheY-homologous receiver domain BUM88_02840 SM00954 Region found in RelA / SpoT proteins BUM88_02855 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BUM88_02900 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BUM88_02960 SM00873 B3/4 domain BUM88_02960 SM00874 tRNA synthetase B5 domain BUM88_02960 SM00896 Ferredoxin-fold anticodon binding domain BUM88_02965 SM00411 bacterial (prokaryotic) histone like domain BUM88_02980 SM00357 Cold shock protein domain BUM88_02980 SM00382 ATPases associated with a variety of cellular activities BUM88_02980 SM00959 Rho termination factor, N-terminal domain BUM88_03000 SM00977 TilS substrate C-terminal domain BUM88_03015 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BUM88_03015 SM00474 3'-5' exonuclease BUM88_03015 SM00475 5'-3' exonuclease BUM88_03015 SM00482 DNA polymerase A domain BUM88_03035 SM00382 ATPases associated with a variety of cellular activities BUM88_03045 SM00347 helix_turn_helix multiple antibiotic resistance protein BUM88_03065 SM00331 Sigma factor PP2C-like phosphatases BUM88_03370 SM00342 helix_turn_helix, arabinose operon control protein BUM88_03400 SM00903 Flavin reductase like domain BUM88_03525 SM00448 cheY-homologous receiver domain BUM88_03525 SM00862 Transcriptional regulatory protein, C terminal BUM88_03530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BUM88_03530 SM00387 Histidine kinase-like ATPases BUM88_03530 SM00388 His Kinase A (phosphoacceptor) domain BUM88_03540 SM00267 diguanylate cyclase BUM88_03565 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BUM88_03570 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BUM88_03570 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BUM88_03615 SM00357 Cold shock protein domain BUM88_03765 SM00382 ATPases associated with a variety of cellular activities BUM88_03765 SM00962 SRP54-type protein, GTPase domain BUM88_03765 SM00963 SRP54-type protein, helical bundle domain BUM88_03785 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_03795 SM00771 ZipA, C-terminal domain (FtsZ-binding) BUM88_03800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BUM88_03800 SM00292 breast cancer carboxy-terminal domain BUM88_03800 SM00532 Ligase N family BUM88_03850 SM00363 S4 RNA-binding domain BUM88_03885 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BUM88_03890 SM00822 BUM88_03890 BUM88_03900 SM00257 Lysin motif BUM88_03945 SM01400 BUM88_03945 BUM88_03975 SM00028 Tetratricopeptide repeats BUM88_03985 SM00400 zinc finger BUM88_03985 SM00493 BUM88_03985 BUM88_04065 SM00825 Beta-ketoacyl synthase BUM88_04085 SM00838 Elongation factor G C-terminus BUM88_04085 SM00889 Elongation factor G, domain IV BUM88_04130 SM00843 BUM88_04130 BUM88_04170 SM00563 Phosphate acyltransferases BUM88_04245 SM00382 ATPases associated with a variety of cellular activities BUM88_04290 SM01004 Delta-aminolevulinic acid dehydratase BUM88_04360 SM01130 BUM88_04360 BUM88_04380 SM00965 Secretin and TonB N terminus short domain BUM88_04495 SM01322 BUM88_04495 BUM88_04550 SM00346 helix_turn_helix isocitrate lyase regulation BUM88_04640 SM00342 helix_turn_helix, arabinose operon control protein BUM88_04670 SM00822 BUM88_04670 BUM88_04685 SM00861 Transketolase, pyrimidine binding domain BUM88_04690 SM01018 B12 binding domain BUM88_04750 SM00947 Carbonic anhydrase BUM88_04760 SM00382 ATPases associated with a variety of cellular activities BUM88_04865 SM01091 Transporter associated domain BUM88_04910 SM00988 UreE urease accessory protein, N-terminal domain BUM88_04960 SM00478 endonuclease III BUM88_04970 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BUM88_04990 SM00382 ATPases associated with a variety of cellular activities BUM88_04990 SM00464 Found in ATP-dependent protease La (LON) BUM88_05035 SM01011 Aminopeptidase P, N-terminal domain BUM88_05055 SM00422 helix_turn_helix, mercury resistance BUM88_05110 SM00479 BUM88_05110 BUM88_05115 SM00257 Lysin motif BUM88_05135 SM00382 ATPases associated with a variety of cellular activities BUM88_05155 SM00479 BUM88_05155 BUM88_05165 SM00267 diguanylate cyclase BUM88_05270 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_05270 SM00895 BUM88_05270 BUM88_05290 SM00344 helix_turn_helix ASNC type BUM88_05335 SM00342 helix_turn_helix, arabinose operon control protein BUM88_05345 SM00858 BUM88_05345 BUM88_05355 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BUM88_05360 SM01130 BUM88_05360 BUM88_05370 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_05370 SM00895 BUM88_05370 BUM88_05420 SM00347 helix_turn_helix multiple antibiotic resistance protein BUM88_05425 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_05425 SM00895 BUM88_05425 BUM88_05490 SM00342 helix_turn_helix, arabinose operon control protein BUM88_05585 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BUM88_05590 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BUM88_05605 SM00788 Adenylosuccinate synthetase BUM88_05625 SM00100 Cyclic nucleotide-monophosphate binding domain BUM88_05625 SM00419 helix_turn_helix, cAMP Regulatory protein BUM88_05645 SM00382 ATPases associated with a variety of cellular activities BUM88_05645 SM01086 C-terminal, D2-small domain, of ClpB protein BUM88_05660 SM00981 BUM88_05660 BUM88_05755 SM00382 ATPases associated with a variety of cellular activities BUM88_05755 SM00487 DEAD-like helicases superfamily BUM88_05755 SM00490 helicase superfamily c-terminal domain BUM88_05755 SM00847 Helicase associated domain (HA2) Add an annotation BUM88_05820 SM00422 helix_turn_helix, mercury resistance BUM88_05870 SM00530 Helix-turn-helix XRE-family like proteins BUM88_05900 SM00357 Cold shock protein domain BUM88_05920 SM00344 helix_turn_helix ASNC type BUM88_06075 SM00840 BUM88_06075 BUM88_06080 SM00116 Domain in cystathionine beta-synthase and other proteins. BUM88_06100 SM00382 ATPases associated with a variety of cellular activities BUM88_06110 SM00382 ATPases associated with a variety of cellular activities BUM88_06160 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BUM88_06160 SM00534 ATPase domain of DNA mismatch repair MUTS family BUM88_06270 SM00342 helix_turn_helix, arabinose operon control protein BUM88_06350 SM00972 Spore Coat Protein U domain BUM88_06375 SM00965 Secretin and TonB N terminus short domain BUM88_06390 SM00052 Putative diguanylate phosphodiesterase BUM88_06400 SM00014 Acid phosphatase homologues BUM88_06525 SM00796 Allophanate hydrolase subunit 1 BUM88_06525 SM00797 Allophanate hydrolase subunit 2 BUM88_06530 SM00878 Biotin carboxylase C-terminal domain BUM88_06620 SM00796 Allophanate hydrolase subunit 1 BUM88_06620 SM00797 Allophanate hydrolase subunit 2 BUM88_06620 SM00878 Biotin carboxylase C-terminal domain BUM88_06655 SM00382 ATPases associated with a variety of cellular activities BUM88_06730 SM00671 Sel1-like repeats. BUM88_06795 SM00382 ATPases associated with a variety of cellular activities BUM88_06795 SM01086 C-terminal, D2-small domain, of ClpB protein BUM88_06830 SM00248 ankyrin repeats BUM88_06855 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_06870 SM00422 helix_turn_helix, mercury resistance BUM88_06900 SM00855 Phosphoglycerate mutase family BUM88_06940 SM01060 BUM88_06940 BUM88_06990 SM00903 Flavin reductase like domain BUM88_07020 SM00346 helix_turn_helix isocitrate lyase regulation BUM88_07045 SM00346 helix_turn_helix isocitrate lyase regulation BUM88_07065 SM00346 helix_turn_helix isocitrate lyase regulation BUM88_07105 SM00882 Coenzyme A transferase BUM88_07110 SM00882 Coenzyme A transferase BUM88_07155 SM00878 Biotin carboxylase C-terminal domain BUM88_07245 SM01236 BUM88_07245 BUM88_07250 SM01060 BUM88_07250 BUM88_07265 SM00384 DNA binding domain with preference for A/T rich regions BUM88_07285 SM00344 helix_turn_helix ASNC type BUM88_07295 SM00387 Histidine kinase-like ATPases BUM88_07295 SM00388 His Kinase A (phosphoacceptor) domain BUM88_07295 SM00448 cheY-homologous receiver domain BUM88_07300 SM00421 helix_turn_helix, Lux Regulon BUM88_07300 SM00448 cheY-homologous receiver domain BUM88_07345 SM00382 ATPases associated with a variety of cellular activities BUM88_07350 SM00062 Bacterial periplasmic substrate-binding proteins BUM88_07355 SM00062 Bacterial periplasmic substrate-binding proteins BUM88_07395 SM00450 Rhodanese Homology Domain BUM88_07400 SM00342 helix_turn_helix, arabinose operon control protein BUM88_07440 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_07455 SM00342 helix_turn_helix, arabinose operon control protein BUM88_07500 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BUM88_07520 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_07570 SM00062 Bacterial periplasmic substrate-binding proteins BUM88_07575 SM00382 ATPases associated with a variety of cellular activities BUM88_07600 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_07600 SM00895 BUM88_07600 BUM88_07630 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BUM88_07635 SM00226 Low molecular weight phosphatase family BUM88_07690 SM00481 DNA polymerase alpha chain like domain BUM88_07695 SM00870 BUM88_07695 BUM88_07720 SM00342 helix_turn_helix, arabinose operon control protein BUM88_07735 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BUM88_07770 SM00100 Cyclic nucleotide-monophosphate binding domain BUM88_07770 SM00419 helix_turn_helix, cAMP Regulatory protein BUM88_07790 SM00382 ATPases associated with a variety of cellular activities BUM88_07790 SM00930 BUM88_07790 BUM88_07825 SM00062 Bacterial periplasmic substrate-binding proteins BUM88_07840 SM00382 ATPases associated with a variety of cellular activities BUM88_07850 SM00344 helix_turn_helix ASNC type BUM88_07860 SM00563 Phosphate acyltransferases BUM88_07870 SM01236 BUM88_07870 BUM88_07920 SM00479 BUM88_07920 BUM88_07945 SM00530 Helix-turn-helix XRE-family like proteins BUM88_07995 SM00507 HNH nucleases BUM88_08190 SM00232 JAB/MPN domain BUM88_08305 SM00342 helix_turn_helix, arabinose operon control protein BUM88_08350 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_08350 SM00876 Biotin and Thiamin Synthesis associated domain BUM88_08370 SM00530 Helix-turn-helix XRE-family like proteins BUM88_08405 SM00861 Transketolase, pyrimidine binding domain BUM88_08415 SM00867 YceI-like domain BUM88_08450 SM00344 helix_turn_helix ASNC type BUM88_08470 SM00342 helix_turn_helix, arabinose operon control protein BUM88_08480 SM00382 ATPases associated with a variety of cellular activities BUM88_08500 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BUM88_08510 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BUM88_08570 SM00470 ParB-like nuclease domain BUM88_08585 SM00382 ATPases associated with a variety of cellular activities BUM88_08645 SM00986 Uracil DNA glycosylase superfamily BUM88_08645 SM00987 UreE urease accessory protein, C-terminal domain BUM88_08670 SM00316 Ribosomal protein S1-like RNA-binding domain BUM88_08675 SM00411 bacterial (prokaryotic) histone like domain BUM88_08685 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BUM88_08700 SM00342 helix_turn_helix, arabinose operon control protein BUM88_08770 SM00382 ATPases associated with a variety of cellular activities BUM88_08825 SM00487 DEAD-like helicases superfamily BUM88_08825 SM00490 helicase superfamily c-terminal domain BUM88_08825 SM00982 BUM88_08825 BUM88_08825 SM01058 CarD-like/TRCF domain BUM88_08835 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain BUM88_08850 SM00271 DnaJ molecular chaperone homology domain BUM88_08885 SM00411 bacterial (prokaryotic) histone like domain BUM88_08895 SM00342 helix_turn_helix, arabinose operon control protein BUM88_08960 SM00855 Phosphoglycerate mutase family BUM88_09035 SM01324 BUM88_09035 BUM88_09065 SM00493 BUM88_09065 BUM88_09070 SM00341 Helicase and RNase D C-terminal BUM88_09070 SM00474 3'-5' exonuclease BUM88_09110 SM00382 ATPases associated with a variety of cellular activities BUM88_09140 SM00267 diguanylate cyclase BUM88_09155 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_09165 SM00861 Transketolase, pyrimidine binding domain BUM88_09185 SM00829 Enoylreductase BUM88_09200 SM00382 ATPases associated with a variety of cellular activities BUM88_09205 SM00849 Metallo-beta-lactamase superfamily BUM88_09230 SM00342 helix_turn_helix, arabinose operon control protein BUM88_09240 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_09240 SM00866 BUM88_09240 BUM88_09265 SM00382 ATPases associated with a variety of cellular activities BUM88_09270 SM00567 E-Z type HEAT repeats BUM88_09325 SM00882 Coenzyme A transferase BUM88_09330 SM00882 Coenzyme A transferase BUM88_09390 SM01034 Sensors of blue-light using FAD BUM88_09420 SM00342 helix_turn_helix, arabinose operon control protein BUM88_09450 SM00903 Flavin reductase like domain BUM88_09460 SM00342 helix_turn_helix, arabinose operon control protein BUM88_09495 SM00382 ATPases associated with a variety of cellular activities BUM88_09525 SM00823 Phosphopantetheine attachment site BUM88_09525 SM00824 Thioesterase BUM88_09530 SM00923 MbtH-like protein BUM88_09540 SM00822 BUM88_09540 BUM88_09600 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_09630 SM00448 cheY-homologous receiver domain BUM88_09630 SM00862 Transcriptional regulatory protein, C terminal BUM88_09635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BUM88_09635 SM00387 Histidine kinase-like ATPases BUM88_09635 SM00388 His Kinase A (phosphoacceptor) domain BUM88_09645 SM00155 Phospholipase D. Active site motifs. BUM88_09675 SM00829 Enoylreductase BUM88_09740 SM00382 ATPases associated with a variety of cellular activities BUM88_09755 SM00382 ATPases associated with a variety of cellular activities BUM88_09760 SM00382 ATPases associated with a variety of cellular activities BUM88_09780 SM00382 ATPases associated with a variety of cellular activities BUM88_09800 SM00382 ATPases associated with a variety of cellular activities BUM88_09900 SM00530 Helix-turn-helix XRE-family like proteins BUM88_10020 SM01400 BUM88_10020 BUM88_10045 SM00903 Flavin reductase like domain BUM88_10080 SM00342 helix_turn_helix, arabinose operon control protein BUM88_10090 SM00382 ATPases associated with a variety of cellular activities BUM88_10130 SM00829 Enoylreductase BUM88_10145 SM00342 helix_turn_helix, arabinose operon control protein BUM88_10150 SM00357 Cold shock protein domain BUM88_10270 SM00822 BUM88_10270 BUM88_10320 SM00860 SMI1 / KNR4 family BUM88_10345 SM00342 helix_turn_helix, arabinose operon control protein BUM88_10395 SM00822 BUM88_10395 BUM88_10400 SM00342 helix_turn_helix, arabinose operon control protein BUM88_10510 SM00829 Enoylreductase BUM88_10595 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_10595 SM00895 BUM88_10595 BUM88_10610 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BUM88_10625 SM00882 Coenzyme A transferase BUM88_10630 SM00882 Coenzyme A transferase BUM88_10665 SM00342 helix_turn_helix, arabinose operon control protein BUM88_10670 SM00903 Flavin reductase like domain BUM88_10715 SM00347 helix_turn_helix multiple antibiotic resistance protein BUM88_10735 SM00855 Phosphoglycerate mutase family BUM88_10755 SM00346 helix_turn_helix isocitrate lyase regulation BUM88_10760 SM00849 Metallo-beta-lactamase superfamily BUM88_10780 SM00564 beta-propeller repeat BUM88_10790 SM00710 Parallel beta-helix repeats BUM88_10825 SM00998 Adenylosuccinate lyase C-terminus BUM88_10835 SM00882 Coenzyme A transferase BUM88_10840 SM00882 Coenzyme A transferase BUM88_10875 SM01192 BUM88_10875 BUM88_10875 SM01193 BUM88_10875 BUM88_10940 SM00382 ATPases associated with a variety of cellular activities BUM88_10940 SM01086 C-terminal, D2-small domain, of ClpB protein BUM88_10955 SM00859 Semialdehyde dehydrogenase, NAD binding domain BUM88_10995 SM01264 BUM88_10995 BUM88_11060 SM00382 ATPases associated with a variety of cellular activities BUM88_11060 SM00962 SRP54-type protein, GTPase domain BUM88_11060 SM00963 SRP54-type protein, helical bundle domain BUM88_11085 SM00116 Domain in cystathionine beta-synthase and other proteins. BUM88_11155 SM00347 helix_turn_helix multiple antibiotic resistance protein BUM88_11165 SM00052 Putative diguanylate phosphodiesterase BUM88_11165 SM00091 PAS domain BUM88_11165 SM00267 diguanylate cyclase BUM88_11210 SM00344 helix_turn_helix ASNC type BUM88_11230 SM00363 S4 RNA-binding domain BUM88_11235 SM00382 ATPases associated with a variety of cellular activities BUM88_11270 SM00935 Outer membrane protein (OmpH-like) BUM88_11280 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BUM88_11310 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_11320 SM00091 PAS domain BUM88_11320 SM00387 Histidine kinase-like ATPases BUM88_11320 SM00388 His Kinase A (phosphoacceptor) domain BUM88_11325 SM00382 ATPases associated with a variety of cellular activities BUM88_11325 SM00448 cheY-homologous receiver domain BUM88_11415 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_11425 SM00852 Probable molybdopterin binding domain BUM88_11430 SM00852 Probable molybdopterin binding domain BUM88_11445 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_11450 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BUM88_11460 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BUM88_11480 SM00448 cheY-homologous receiver domain BUM88_11480 SM01012 BUM88_11480 BUM88_11545 SM00878 Biotin carboxylase C-terminal domain BUM88_11560 SM00972 Spore Coat Protein U domain BUM88_11575 SM00972 Spore Coat Protein U domain BUM88_11615 SM00226 Low molecular weight phosphatase family BUM88_11650 SM00382 ATPases associated with a variety of cellular activities BUM88_11685 SM00822 BUM88_11685 BUM88_11715 SM00344 helix_turn_helix ASNC type BUM88_11745 SM00382 ATPases associated with a variety of cellular activities BUM88_11855 SM00448 cheY-homologous receiver domain BUM88_11855 SM00862 Transcriptional regulatory protein, C terminal BUM88_11860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BUM88_11860 SM00387 Histidine kinase-like ATPases BUM88_11860 SM00388 His Kinase A (phosphoacceptor) domain BUM88_11885 SM00830 Chorismate mutase type II BUM88_11905 SM00972 Spore Coat Protein U domain BUM88_11920 SM00972 Spore Coat Protein U domain BUM88_11950 SM00382 ATPases associated with a variety of cellular activities BUM88_11965 SM00862 Transcriptional regulatory protein, C terminal BUM88_12035 SM00853 MutL C terminal dimerisation domain BUM88_12035 SM01340 BUM88_12035 BUM88_12060 SM00363 S4 RNA-binding domain BUM88_12160 SM01230 BUM88_12160 BUM88_12165 SM00448 cheY-homologous receiver domain BUM88_12165 SM00862 Transcriptional regulatory protein, C terminal BUM88_12170 SM00387 Histidine kinase-like ATPases BUM88_12170 SM00388 His Kinase A (phosphoacceptor) domain BUM88_12195 SM00905 Dihydroneopterin aldolase BUM88_12210 SM00903 Flavin reductase like domain BUM88_12220 SM00822 BUM88_12220 BUM88_12225 SM00342 helix_turn_helix, arabinose operon control protein BUM88_12230 SM00062 Bacterial periplasmic substrate-binding proteins BUM88_12245 SM00937 BUM88_12245 BUM88_12360 SM01005 Alanine racemase, C-terminal domain BUM88_12370 SM00460 Transglutaminase/protease-like homologues BUM88_12390 SM01228 BUM88_12390 BUM88_12415 SM00798 AICARFT/IMPCHase bienzyme BUM88_12415 SM00851 MGS-like domain BUM88_12420 SM01209 BUM88_12420 BUM88_12420 SM01210 BUM88_12420 BUM88_12435 SM00382 ATPases associated with a variety of cellular activities BUM88_12435 SM00930 BUM88_12435 BUM88_12445 SM00849 Metallo-beta-lactamase superfamily BUM88_12515 SM00342 helix_turn_helix, arabinose operon control protein BUM88_12550 SM00829 Enoylreductase BUM88_12585 SM00448 cheY-homologous receiver domain BUM88_12585 SM00862 Transcriptional regulatory protein, C terminal BUM88_12590 SM00388 His Kinase A (phosphoacceptor) domain BUM88_12630 SM00387 Histidine kinase-like ATPases BUM88_12630 SM00388 His Kinase A (phosphoacceptor) domain BUM88_12635 SM00448 cheY-homologous receiver domain BUM88_12635 SM00862 Transcriptional regulatory protein, C terminal BUM88_12645 SM00095 Transthyretin BUM88_12745 SM00342 helix_turn_helix, arabinose operon control protein BUM88_12810 SM00342 helix_turn_helix, arabinose operon control protein BUM88_12830 SM01034 Sensors of blue-light using FAD BUM88_12835 SM00357 Cold shock protein domain BUM88_12930 SM00855 Phosphoglycerate mutase family BUM88_12950 SM00487 DEAD-like helicases superfamily BUM88_12950 SM00490 helicase superfamily c-terminal domain BUM88_12955 SM00357 Cold shock protein domain BUM88_13000 SM00382 ATPases associated with a variety of cellular activities BUM88_13045 SM00830 Chorismate mutase type II BUM88_13115 SM00387 Histidine kinase-like ATPases BUM88_13115 SM00388 His Kinase A (phosphoacceptor) domain BUM88_13120 SM00448 cheY-homologous receiver domain BUM88_13120 SM00862 Transcriptional regulatory protein, C terminal BUM88_13155 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_13165 SM00382 ATPases associated with a variety of cellular activities BUM88_13180 SM00062 Bacterial periplasmic substrate-binding proteins BUM88_13225 SM00479 BUM88_13225 BUM88_13240 SM00382 ATPases associated with a variety of cellular activities BUM88_13290 SM00342 helix_turn_helix, arabinose operon control protein BUM88_13335 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_13355 SM00996 S-adenosyl-L-homocysteine hydrolase BUM88_13355 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BUM88_13370 SM00052 Putative diguanylate phosphodiesterase BUM88_13370 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BUM88_13370 SM00091 PAS domain BUM88_13370 SM00267 diguanylate cyclase BUM88_13375 SM00919 Malic enzyme, NAD binding domain BUM88_13375 SM01274 BUM88_13375 BUM88_13385 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BUM88_13430 SM01230 BUM88_13430 BUM88_13465 SM00463 Small MutS-related domain BUM88_13475 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BUM88_13480 SM01092 CO dehydrogenase flavoprotein C-terminal domain BUM88_13575 SM00357 Cold shock protein domain BUM88_13605 SM00841 Elongation factor P, C-terminal BUM88_13605 SM01185 BUM88_13605 BUM88_13620 SM00052 Putative diguanylate phosphodiesterase BUM88_13655 SM00257 Lysin motif BUM88_13675 SM00936 Penicillin-binding protein 5, C-terminal domain BUM88_13725 SM00382 ATPases associated with a variety of cellular activities BUM88_13755 SM00344 helix_turn_helix ASNC type BUM88_13810 SM00487 DEAD-like helicases superfamily BUM88_13810 SM00490 helicase superfamily c-terminal domain BUM88_13840 SM00880 BUM88_13840 BUM88_13840 SM01118 BUM88_13840 BUM88_13885 SM01329 BUM88_13885 BUM88_13980 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BUM88_14000 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BUM88_14015 SM00487 DEAD-like helicases superfamily BUM88_14015 SM00490 helicase superfamily c-terminal domain BUM88_14025 SM00267 diguanylate cyclase BUM88_14095 SM01230 BUM88_14095 BUM88_14130 SM00463 Small MutS-related domain BUM88_14140 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BUM88_14145 SM01092 CO dehydrogenase flavoprotein C-terminal domain BUM88_14240 SM00357 Cold shock protein domain BUM88_14270 SM00841 Elongation factor P, C-terminal BUM88_14270 SM01185 BUM88_14270 BUM88_14285 SM00052 Putative diguanylate phosphodiesterase BUM88_14320 SM00257 Lysin motif BUM88_14340 SM00936 Penicillin-binding protein 5, C-terminal domain BUM88_14390 SM00382 ATPases associated with a variety of cellular activities BUM88_14420 SM00344 helix_turn_helix ASNC type BUM88_14475 SM00487 DEAD-like helicases superfamily BUM88_14475 SM00490 helicase superfamily c-terminal domain BUM88_14505 SM00880 BUM88_14505 BUM88_14505 SM01118 BUM88_14505 BUM88_14550 SM01329 BUM88_14550 BUM88_14645 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BUM88_14665 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BUM88_14680 SM00487 DEAD-like helicases superfamily BUM88_14680 SM00490 helicase superfamily c-terminal domain BUM88_14690 SM00267 diguanylate cyclase BUM88_14760 SM00358 Double-stranded RNA binding motif BUM88_14760 SM00535 Ribonuclease III family BUM88_14775 SM00838 Elongation factor G C-terminus BUM88_14790 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BUM88_14840 SM00382 ATPases associated with a variety of cellular activities BUM88_14915 SM01211 BUM88_14915 BUM88_14920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BUM88_14925 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BUM88_14930 SM00382 ATPases associated with a variety of cellular activities BUM88_15050 SM00849 Metallo-beta-lactamase superfamily BUM88_15055 SM00382 ATPases associated with a variety of cellular activities BUM88_15105 SM00434 DNA Topoisomerase IV BUM88_15110 SM00849 Metallo-beta-lactamase superfamily BUM88_15115 SM00342 helix_turn_helix, arabinose operon control protein BUM88_15120 SM00893 Electron transfer flavoprotein domain BUM88_15125 SM00893 Electron transfer flavoprotein domain BUM88_15170 SM00382 ATPases associated with a variety of cellular activities BUM88_15175 SM00978 BUM88_15175 BUM88_15345 SM00849 Metallo-beta-lactamase superfamily BUM88_15360 SM00883 Chaperonin 10 Kd subunit BUM88_15375 SM00046 Diacylglycerol kinase catalytic domain (presumed) BUM88_15450 SM00382 ATPases associated with a variety of cellular activities BUM88_15460 SM01103 BUM88_15460 BUM88_15480 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BUM88_15485 SM00851 MGS-like domain BUM88_15485 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BUM88_15515 SM00854 Bacterial capsule synthesis protein PGA_cap BUM88_15555 SM00881 CoA binding domain BUM88_15575 SM00861 Transketolase, pyrimidine binding domain BUM88_15625 SM00450 Rhodanese Homology Domain BUM88_15690 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BUM88_15745 SM00014 Acid phosphatase homologues BUM88_15780 SM00822 BUM88_15780 BUM88_15825 SM00387 Histidine kinase-like ATPases BUM88_15825 SM00388 His Kinase A (phosphoacceptor) domain BUM88_15830 SM00448 cheY-homologous receiver domain BUM88_15830 SM00862 Transcriptional regulatory protein, C terminal BUM88_15855 SM00563 Phosphate acyltransferases BUM88_15870 SM00244 prohibitin homologues BUM88_15915 SM00860 SMI1 / KNR4 family BUM88_15945 SM00829 Enoylreductase BUM88_15950 SM00342 helix_turn_helix, arabinose operon control protein BUM88_15970 SM00342 helix_turn_helix, arabinose operon control protein BUM88_16005 SM00316 Ribosomal protein S1-like RNA-binding domain BUM88_16040 SM00845 GatB domain BUM88_16175 SM00073 Histidine Phosphotransfer domain BUM88_16175 SM00260 Two component signalling adaptor domain BUM88_16175 SM00387 Histidine kinase-like ATPases BUM88_16175 SM00448 cheY-homologous receiver domain BUM88_16175 SM01231 BUM88_16175 BUM88_16180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BUM88_16185 SM00260 Two component signalling adaptor domain BUM88_16190 SM00448 cheY-homologous receiver domain BUM88_16195 SM00448 cheY-homologous receiver domain BUM88_16260 SM00903 Flavin reductase like domain BUM88_16290 SM00671 Sel1-like repeats. BUM88_16315 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BUM88_16315 SM01232 BUM88_16315 BUM88_16335 SM00838 Elongation factor G C-terminus BUM88_16395 SM00564 beta-propeller repeat BUM88_16410 SM00342 helix_turn_helix, arabinose operon control protein BUM88_16460 SM00957 SecA DEAD-like domain BUM88_16460 SM00958 SecA preprotein cross-linking domain BUM88_16470 SM00849 Metallo-beta-lactamase superfamily BUM88_16505 SM00342 helix_turn_helix, arabinose operon control protein BUM88_16570 SM00448 cheY-homologous receiver domain BUM88_16570 SM00862 Transcriptional regulatory protein, C terminal BUM88_16575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BUM88_16575 SM00387 Histidine kinase-like ATPases BUM88_16575 SM00388 His Kinase A (phosphoacceptor) domain BUM88_16700 SM00387 Histidine kinase-like ATPases BUM88_16700 SM00388 His Kinase A (phosphoacceptor) domain BUM88_16710 SM00382 ATPases associated with a variety of cellular activities BUM88_16755 SM01323 BUM88_16755 BUM88_16785 SM00481 DNA polymerase alpha chain like domain BUM88_16810 SM00450 Rhodanese Homology Domain BUM88_16895 SM00267 diguanylate cyclase BUM88_16910 SM00155 Phospholipase D. Active site motifs. BUM88_16915 SM00563 Phosphate acyltransferases BUM88_16945 SM00650 Ribosomal RNA adenine dimethylases BUM88_16980 SM00878 Biotin carboxylase C-terminal domain BUM88_17080 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BUM88_17110 SM00729 Elongator protein 3, MiaB family, Radical SAM BUM88_17195 SM00316 Ribosomal protein S1-like RNA-binding domain BUM88_17195 SM00955 BUM88_17195 BUM88_17255 SM00662 RNA polymerases D BUM88_17260 SM00363 S4 RNA-binding domain BUM88_17260 SM01390 BUM88_17260 BUM88_17325 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BUM88_17330 SM01374 BUM88_17330 BUM88_17350 SM00322 K homology RNA-binding domain BUM88_17365 SM01382 BUM88_17365 BUM88_17365 SM01383 BUM88_17365 BUM88_17385 SM01403 BUM88_17385 BUM88_17435 SM00563 Phosphate acyltransferases BUM88_17450 SM00487 DEAD-like helicases superfamily BUM88_17450 SM00490 helicase superfamily c-terminal domain BUM88_17495 SM00382 ATPases associated with a variety of cellular activities BUM88_17505 SM00487 DEAD-like helicases superfamily BUM88_17505 SM00490 helicase superfamily c-terminal domain BUM88_17515 SM00861 Transketolase, pyrimidine binding domain BUM88_17555 SM00116 Domain in cystathionine beta-synthase and other proteins. BUM88_17670 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BUM88_17865 SM00072 Guanylate kinase homologues. BUM88_17870 SM01409 BUM88_17870 BUM88_17875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BUM88_17875 SM00954 Region found in RelA / SpoT proteins BUM88_17950 SM00965 Secretin and TonB N terminus short domain BUM88_18100 SM00382 ATPases associated with a variety of cellular activities BUM88_18115 SM00947 Carbonic anhydrase BUM88_18125 SM00316 Ribosomal protein S1-like RNA-binding domain BUM88_18125 SM00732 Likely ribonuclease with RNase H fold. BUM88_18130 SM00448 cheY-homologous receiver domain BUM88_18130 SM00862 Transcriptional regulatory protein, C terminal BUM88_18135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BUM88_18135 SM00387 Histidine kinase-like ATPases BUM88_18135 SM00388 His Kinase A (phosphoacceptor) domain BUM88_18185 SM00474 3'-5' exonuclease BUM88_18195 SM00530 Helix-turn-helix XRE-family like proteins BUM88_18215 SM00357 Cold shock protein domain BUM88_18235 SM00342 helix_turn_helix, arabinose operon control protein BUM88_18260 SM00477 DNA/RNA non-specific endonuclease BUM88_18260 SM00892 DNA/RNA non-specific endonuclease BUM88_18315 SM00530 Helix-turn-helix XRE-family like proteins BUM88_18335 SM00342 helix_turn_helix, arabinose operon control protein BUM88_18365 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BUM88_18410 SM00342 helix_turn_helix, arabinose operon control protein BUM88_18535 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_18545 SM00530 Helix-turn-helix XRE-family like proteins BUM88_18560 SM00382 ATPases associated with a variety of cellular activities BUM88_18620 SM00422 helix_turn_helix, mercury resistance BUM88_18640 SM00829 Enoylreductase BUM88_18655 SM00267 diguanylate cyclase BUM88_18685 SM00387 Histidine kinase-like ATPases BUM88_18685 SM00388 His Kinase A (phosphoacceptor) domain BUM88_18685 SM00448 cheY-homologous receiver domain BUM88_18695 SM00421 helix_turn_helix, Lux Regulon BUM88_18695 SM00448 cheY-homologous receiver domain BUM88_18710 SM00344 helix_turn_helix ASNC type BUM88_18750 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BUM88_18755 SM00937 BUM88_18755 BUM88_18785 SM00116 Domain in cystathionine beta-synthase and other proteins. BUM88_18785 SM01240 BUM88_18785 BUM88_18790 SM00849 Metallo-beta-lactamase superfamily BUM88_18835 SM00864 Tubulin/FtsZ family, GTPase domain BUM88_18835 SM00865 Tubulin/FtsZ family, C-terminal domain BUM88_18840 SM00842 Cell division protein FtsA BUM88_18910 SM00267 diguanylate cyclase BUM88_18945 SM00095 Transthyretin BUM88_18975 SM00387 Histidine kinase-like ATPases BUM88_18975 SM00433 TopoisomeraseII BUM88_19000 SM00257 Lysin motif BUM88_19055 SM00448 cheY-homologous receiver domain BUM88_19055 SM00862 Transcriptional regulatory protein, C terminal BUM88_19060 SM00091 PAS domain BUM88_19060 SM00387 Histidine kinase-like ATPases BUM88_19060 SM00388 His Kinase A (phosphoacceptor) domain BUM88_19095 SM00450 Rhodanese Homology Domain BUM88_19220 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_19220 SM00866 BUM88_19220 BUM88_19230 SM00833 Cobalamin synthesis protein cobW C-terminal domain BUM88_19260 SM00346 helix_turn_helix isocitrate lyase regulation BUM88_19290 SM01130 BUM88_19290 BUM88_19315 SM00382 ATPases associated with a variety of cellular activities BUM88_19345 SM00478 endonuclease III BUM88_19345 SM00525 BUM88_19345 BUM88_19365 SM00829 Enoylreductase BUM88_19370 SM00345 helix_turn_helix gluconate operon transcriptional repressor BUM88_19415 SM00271 DnaJ molecular chaperone homology domain BUM88_19575 SM00382 ATPases associated with a variety of cellular activities BUM88_19590 SM00387 Histidine kinase-like ATPases BUM88_19590 SM00433 TopoisomeraseII BUM88_19600 SM00480 DNA polymerase III beta subunit BUM88_19605 SM00382 ATPases associated with a variety of cellular activities BUM88_19605 SM00760 Bacterial dnaA protein helix-turn-helix domain BUM88_19620 SM01234 BUM88_19620 BUM88_19690 SM00014 Acid phosphatase homologues BUM88_19710 SM01001 AIR carboxylase BUM88_19735 SM00235 Zinc-dependent metalloprotease BUM88_19760 SM00849 Metallo-beta-lactamase superfamily