locus-tag class description CDG60_00020 PF01636 Phosphotransferase enzyme family CDG60_00035 PF00239 Resolvase, N terminal domain CDG60_00035 PF02796 Helix-turn-helix domain of resolvase CDG60_00040 PF07690 Major Facilitator Superfamily CDG60_00045 PF00440 Bacterial regulatory proteins, tetR family CDG60_00045 PF02909 Tetracyclin repressor-like, C-terminal domain CDG60_00125 PF01909 Nucleotidyltransferase domain CDG60_00125 PF13427 Domain of unknown function (DUF4111) CDG60_00140 PF01051 Initiator Replication protein CDG60_00160 PF03389 MobA/MobL family CDG60_00190 PF01464 Transglycosylase SLT domain CDG60_00190 PF10145 Phage-related minor tail protein CDG60_00190 PF01551 Peptidase family M23 CDG60_00205 PF00437 Type II/IV secretion system protein CDG60_00210 PF03743 Bacterial conjugation TrbI-like protein CDG60_00250 PF13614 AAA domain CDG60_00305 PF01636 Phosphotransferase enzyme family CDG60_00310 PF13936 Helix-turn-helix domain CDG60_00310 PF00665 Integrase core domain CDG60_00315 PF00753 Metallo-beta-lactamase superfamily CDG60_00325 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDG60_00330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDG60_00335 PF03091 CutA1 divalent ion tolerance protein CDG60_00340 PF00166 Chaperonin 10 Kd subunit CDG60_00345 PF00118 TCP-1/cpn60 chaperonin family CDG60_00365 PF13936 Helix-turn-helix domain CDG60_00365 PF00665 Integrase core domain CDG60_00370 PF02796 Helix-turn-helix domain of resolvase CDG60_00370 PF00239 Resolvase, N terminal domain CDG60_00385 PF00565 Staphylococcal nuclease homologue CDG60_00410 PF10145 Phage-related minor tail protein CDG60_00410 PF01464 Transglycosylase SLT domain CDG60_00410 PF01551 Peptidase family M23 CDG60_00435 PF02195 ParB-like nuclease domain CDG60_00435 PF17762 HTH domain found in ParB protein CDG60_00440 PF13614 AAA domain CDG60_00475 PF00717 Peptidase S24-like CDG60_00480 PF00817 impB/mucB/samB family CDG60_00480 PF13438 Domain of unknown function (DUF4113) CDG60_00480 PF11799 impB/mucB/samB family C-terminal domain CDG60_00490 PF13742 OB-fold nucleic acid binding domain CDG60_00490 PF02601 Exonuclease VII, large subunit CDG60_00495 PF13610 DDE domain CDG60_00510 PF05973 Phage derived protein Gp49-like (DUF891) CDG60_00515 PF01381 Helix-turn-helix CDG60_00545 PF13936 Helix-turn-helix domain CDG60_00545 PF00665 Integrase core domain CDG60_00550 PF01636 Phosphotransferase enzyme family CDG60_00555 PF13936 Helix-turn-helix domain CDG60_00555 PF00665 Integrase core domain CDG60_00590 PF00905 Penicillin binding protein transpeptidase domain CDG60_00615 PF00072 Response regulator receiver domain CDG60_00615 PF00486 Transcriptional regulatory protein, C terminal CDG60_00620 PF00989 PAS fold CDG60_00620 PF00512 His Kinase A (phospho-acceptor) domain CDG60_00620 PF18698 Histidine kinase sensor domain CDG60_00620 PF00672 HAMP domain CDG60_00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_00625 PF07690 Major Facilitator Superfamily CDG60_00630 PF00873 AcrB/AcrD/AcrF family CDG60_00635 PF00529 HlyD membrane-fusion protein of T1SS CDG60_00635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG60_00650 PF02796 Helix-turn-helix domain of resolvase CDG60_00650 PF00239 Resolvase, N terminal domain CDG60_00655 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDG60_00655 PF13542 Helix-turn-helix domain of transposase family ISL3 CDG60_00655 PF01610 Transposase CDG60_00660 PF07690 Major Facilitator Superfamily CDG60_00730 PF02522 Aminoglycoside 3-N-acetyltransferase CDG60_00745 PF11638 DnaA N-terminal domain CDG60_00745 PF08299 Bacterial dnaA protein helix-turn-helix CDG60_00745 PF00308 Bacterial dnaA protein CDG60_00750 PF02767 DNA polymerase III beta subunit, central domain CDG60_00750 PF02768 DNA polymerase III beta subunit, C-terminal domain CDG60_00750 PF00712 DNA polymerase III beta subunit, N-terminal domain CDG60_00755 PF02463 RecF/RecN/SMC N terminal domain CDG60_00760 PF01751 Toprim domain CDG60_00760 PF00986 DNA gyrase B subunit, carboxyl terminus CDG60_00760 PF18053 DNA gyrase B subunit insert domain CDG60_00760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_00760 PF00204 DNA gyrase B CDG60_00770 PF12848 ABC transporter CDG60_00770 PF00005 ABC transporter CDG60_00795 PF01521 Iron-sulphur cluster biosynthesis CDG60_00800 PF00561 alpha/beta hydrolase fold CDG60_00805 PF03702 Anhydro-N-acetylmuramic acid kinase CDG60_00810 PF00579 tRNA synthetases class I (W and Y) CDG60_00815 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDG60_00820 PF00005 ABC transporter CDG60_00825 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_00830 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CDG60_00840 PF00149 Calcineurin-like phosphoesterase CDG60_00840 PF02872 5'-nucleotidase, C-terminal domain CDG60_00875 PF07690 Major Facilitator Superfamily CDG60_00900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG60_00905 PF01252 Signal peptidase (SPase) II CDG60_00910 PF08264 Anticodon-binding domain of tRNA CDG60_00910 PF00133 tRNA synthetases class I (I, L, M and V) CDG60_00910 PF06827 Zinc finger found in FPG and IleRS CDG60_00915 PF06574 FAD synthetase CDG60_00915 PF01687 Riboflavin kinase CDG60_00930 PF08362 YcdC-like protein, C-terminal region CDG60_00930 PF00440 Bacterial regulatory proteins, tetR family CDG60_00935 PF00005 ABC transporter CDG60_00940 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_00945 PF00296 Luciferase-like monooxygenase CDG60_00950 PF09084 NMT1/THI5 like CDG60_00955 PF09084 NMT1/THI5 like CDG60_00960 PF00696 Amino acid kinase family CDG60_00960 PF00583 Acetyltransferase (GNAT) family CDG60_00980 PF00106 short chain dehydrogenase CDG60_00985 PF13419 Haloacid dehalogenase-like hydrolase CDG60_00995 PF01323 DSBA-like thioredoxin domain CDG60_01000 PF00440 Bacterial regulatory proteins, tetR family CDG60_01005 PF00175 Oxidoreductase NAD-binding domain CDG60_01005 PF00042 Globin CDG60_01005 PF00970 Oxidoreductase FAD-binding domain CDG60_01010 PF00487 Fatty acid desaturase CDG60_01015 PF00440 Bacterial regulatory proteins, tetR family CDG60_01020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG60_01025 PF00873 AcrB/AcrD/AcrF family CDG60_01035 PF00684 DnaJ central domain CDG60_01035 PF01556 DnaJ C terminal domain CDG60_01035 PF00226 DnaJ domain CDG60_01045 PF05173 Dihydrodipicolinate reductase, C-terminus CDG60_01045 PF01113 Dihydrodipicolinate reductase, N-terminus CDG60_01055 PF13614 AAA domain CDG60_01055 PF02706 Chain length determinant protein CDG60_01055 PF13807 G-rich domain on putative tyrosine kinase CDG60_01060 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDG60_01065 PF02563 Polysaccharide biosynthesis/export protein CDG60_01065 PF10531 SLBB domain CDG60_01070 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG60_01070 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG60_01070 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDG60_01075 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDG60_01075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDG60_01080 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_01085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDG60_01105 PF13439 Glycosyltransferase Family 4 CDG60_01105 PF00534 Glycosyl transferases group 1 CDG60_01115 PF02397 Bacterial sugar transferase CDG60_01120 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_01120 PF14602 Hexapeptide repeat of succinyl-transferase CDG60_01120 PF17836 PglD N-terminal domain CDG60_01125 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDG60_01130 PF02719 Polysaccharide biosynthesis protein CDG60_01135 PF00483 Nucleotidyl transferase CDG60_01140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG60_01140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDG60_01140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG60_01145 PF00342 Phosphoglucose isomerase CDG60_01150 PF16363 GDP-mannose 4,6 dehydratase CDG60_01155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG60_01155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG60_01155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG60_01155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG60_01190 PF18623 TnsE C-terminal domain CDG60_01195 PF06527 TniQ CDG60_01195 PF15978 Tn7-like transposition protein D CDG60_01200 PF03717 Penicillin-binding Protein dimerisation domain CDG60_01200 PF00905 Penicillin binding protein transpeptidase domain CDG60_01205 PF03129 Anticodon binding domain CDG60_01205 PF02824 TGS domain CDG60_01205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG60_01205 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDG60_01210 PF01979 Amidohydrolase family CDG60_01220 PF01502 Phosphoribosyl-AMP cyclohydrolase CDG60_01225 PF02649 Type I GTP cyclohydrolase folE2 CDG60_01230 PF01475 Ferric uptake regulator family CDG60_01235 PF09190 DALR domain CDG60_01235 PF01406 tRNA synthetases class I (C) catalytic domain CDG60_01250 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDG60_01250 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDG60_01260 PF04143 Sulphur transport CDG60_01270 PF00753 Metallo-beta-lactamase superfamily CDG60_01275 PF01925 Sulfite exporter TauE/SafE CDG60_01280 PF00581 Rhodanese-like domain CDG60_01310 PF02322 Cytochrome bd terminal oxidase subunit II CDG60_01315 PF01654 Cytochrome bd terminal oxidase subunit I CDG60_01325 PF13401 AAA domain CDG60_01325 PF11426 Tn7 transposition regulator TnsC CDG60_01330 PF00665 Integrase core domain CDG60_01335 PF08722 TnsA endonuclease N terminal CDG60_01335 PF08721 TnsA endonuclease C terminal CDG60_01340 PF01380 SIS domain CDG60_01350 PF00586 AIR synthase related protein, N-terminal domain CDG60_01350 PF02769 AIR synthase related protein, C-terminal domain CDG60_01355 PF01029 NusB family CDG60_01360 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDG60_01365 PF00925 GTP cyclohydrolase II CDG60_01365 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDG60_01380 PF01722 BolA-like protein CDG60_01390 PF13614 AAA domain CDG60_01405 PF09335 SNARE associated Golgi protein CDG60_01410 PF07681 DoxX CDG60_01415 PF02540 NAD synthase CDG60_01415 PF00117 Glutamine amidotransferase class-I CDG60_01415 PF00958 GMP synthase C terminal domain CDG60_01420 PF14338 Mrr N-terminal domain CDG60_01420 PF04471 Restriction endonuclease CDG60_01425 PF03551 Transcriptional regulator PadR-like family CDG60_01440 PF02678 Pirin CDG60_01440 PF05726 Pirin C-terminal cupin domain CDG60_01455 PF00561 alpha/beta hydrolase fold CDG60_01465 PF00892 EamA-like transporter family CDG60_01475 PF00750 tRNA synthetases class I (R) CDG60_01475 PF03485 Arginyl tRNA synthetase N terminal domain CDG60_01475 PF05746 DALR anticodon binding domain CDG60_01480 PF00390 Malic enzyme, N-terminal domain CDG60_01480 PF03949 Malic enzyme, NAD binding domain CDG60_01485 PF04717 Type VI secretion system, phage-baseplate injector CDG60_01500 PF13936 Helix-turn-helix domain CDG60_01500 PF00665 Integrase core domain CDG60_01515 PF04261 Dyp-type peroxidase family CDG60_01520 PF01810 LysE type translocator CDG60_01525 PF01925 Sulfite exporter TauE/SafE CDG60_01530 PF00950 ABC 3 transport family CDG60_01535 PF00005 ABC transporter CDG60_01555 PF00119 ATP synthase A chain CDG60_01560 PF00137 ATP synthase subunit C CDG60_01565 PF00430 ATP synthase B/B' CF(0) CDG60_01570 PF00213 ATP synthase delta (OSCP) subunit CDG60_01575 PF00306 ATP synthase alpha/beta chain, C terminal domain CDG60_01575 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDG60_01575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG60_01580 PF00231 ATP synthase CDG60_01585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG60_01585 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDG60_01590 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDG60_01600 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_01610 PF05726 Pirin C-terminal cupin domain CDG60_01610 PF02678 Pirin CDG60_01620 PF00743 Flavin-binding monooxygenase-like CDG60_01625 PF00106 short chain dehydrogenase CDG60_01640 PF00255 Glutathione peroxidase CDG60_01650 PF07690 Major Facilitator Superfamily CDG60_01655 PF00440 Bacterial regulatory proteins, tetR family CDG60_01660 PF00892 EamA-like transporter family CDG60_01665 PF01300 Telomere recombination CDG60_01670 PF17782 DprA winged helix domain CDG60_01670 PF02481 DNA recombination-mediator protein A CDG60_01680 PF01327 Polypeptide deformylase CDG60_01705 PF00440 Bacterial regulatory proteins, tetR family CDG60_01760 PF07690 Major Facilitator Superfamily CDG60_01785 PF11842 Domain of unknown function (DUF3362) CDG60_01785 PF08497 Radical SAM N-terminal CDG60_01785 PF04055 Radical SAM superfamily CDG60_01800 PF11798 IMS family HHH motif CDG60_01800 PF11799 impB/mucB/samB family C-terminal domain CDG60_01800 PF00817 impB/mucB/samB family CDG60_01815 PF07690 Major Facilitator Superfamily CDG60_01830 PF03641 Possible lysine decarboxylase CDG60_01835 PF03471 Transporter associated domain CDG60_01835 PF03741 Integral membrane protein TerC family CDG60_01855 PF02810 SEC-C motif CDG60_01860 PF03458 UPF0126 domain CDG60_01865 PF07690 Major Facilitator Superfamily CDG60_01880 PF00521 DNA gyrase/topoisomerase IV, subunit A CDG60_01880 PF03989 DNA gyrase C-terminal domain, beta-propeller CDG60_01885 PF00501 AMP-binding enzyme CDG60_01885 PF13193 AMP-binding enzyme C-terminal domain CDG60_01900 PF00719 Inorganic pyrophosphatase CDG60_01905 PF03573 outer membrane porin, OprD family CDG60_01925 PF01078 Magnesium chelatase, subunit ChlI CDG60_01925 PF13335 Magnesium chelatase, subunit ChlI C-terminal CDG60_01935 PF00543 Nitrogen regulatory protein P-II CDG60_01940 PF00909 Ammonium Transporter Family CDG60_01945 PF03477 ATP cone domain CDG60_01950 PF01872 RibD C-terminal domain CDG60_01950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDG60_01955 PF02086 D12 class N6 adenine-specific DNA methyltransferase CDG60_01960 PF00677 Lumazine binding domain CDG60_01965 PF09335 SNARE associated Golgi protein CDG60_01985 PF02789 Cytosol aminopeptidase family, N-terminal domain CDG60_01985 PF00883 Cytosol aminopeptidase family, catalytic domain CDG60_01990 PF03739 Lipopolysaccharide export system permease LptF/LptG CDG60_01995 PF03739 Lipopolysaccharide export system permease LptF/LptG CDG60_02000 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CDG60_02000 PF01676 Metalloenzyme superfamily CDG60_02005 PF17820 PDZ domain CDG60_02005 PF01471 Putative peptidoglycan binding domain CDG60_02005 PF03572 Peptidase family S41 CDG60_02010 PF02954 Bacterial regulatory protein, Fis family CDG60_02010 PF00158 Sigma-54 interaction domain CDG60_02010 PF00072 Response regulator receiver domain CDG60_02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_02015 PF00512 His Kinase A (phospho-acceptor) domain CDG60_02020 PF00072 Response regulator receiver domain CDG60_02020 PF00196 Bacterial regulatory proteins, luxR family CDG60_02025 PF00768 D-alanyl-D-alanine carboxypeptidase CDG60_02030 PF00291 Pyridoxal-phosphate dependent enzyme CDG60_02035 PF03447 Homoserine dehydrogenase, NAD binding domain CDG60_02035 PF01842 ACT domain CDG60_02035 PF00742 Homoserine dehydrogenase CDG60_02040 PF13098 Thioredoxin-like domain CDG60_02040 PF10411 Disulfide bond isomerase protein N-terminus CDG60_02045 PF00589 Phage integrase family CDG60_02045 PF02899 Phage integrase, N-terminal SAM-like domain CDG60_02055 PF02421 Ferrous iron transport protein B CDG60_02055 PF07664 Ferrous iron transport protein B C terminus CDG60_02055 PF07670 Nucleoside recognition CDG60_02065 PF02875 Mur ligase family, glutamate ligase domain CDG60_02065 PF08245 Mur ligase middle domain CDG60_02070 PF01098 Cell cycle protein CDG60_02080 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG60_02085 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDG60_02090 PF00149 Calcineurin-like phosphoesterase CDG60_02095 PF00293 NUDIX domain CDG60_02100 PF01964 Radical SAM ThiC family CDG60_02100 PF13667 ThiC-associated domain CDG60_02110 PF02321 Outer membrane efflux protein CDG60_02115 PF01895 PhoU domain CDG60_02120 PF04362 Bacterial Fe(2+) trafficking CDG60_02125 PF14698 Argininosuccinate lyase C-terminal CDG60_02125 PF00206 Lyase CDG60_02130 PF07694 5TMR of 5TMR-LYT CDG60_02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_02130 PF06580 Histidine kinase CDG60_02135 PF00072 Response regulator receiver domain CDG60_02135 PF04397 LytTr DNA-binding domain CDG60_02140 PF03900 Porphobilinogen deaminase, C-terminal domain CDG60_02140 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDG60_02165 PF00816 H-NS histone family CDG60_02180 PF00263 Bacterial type II and III secretion system protein CDG60_02180 PF03958 Bacterial type II/III secretion system short domain CDG60_02185 PF16697 Inner membrane component of T3SS, cytoplasmic domain CDG60_02190 PF13419 Haloacid dehalogenase-like hydrolase CDG60_02195 PF00425 chorismate binding enzyme CDG60_02195 PF04715 Anthranilate synthase component I, N terminal region CDG60_02220 PF03143 Elongation factor Tu C-terminal domain CDG60_02220 PF03144 Elongation factor Tu domain 2 CDG60_02220 PF00009 Elongation factor Tu GTP binding domain CDG60_02230 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDG60_02235 PF02357 Transcription termination factor nusG CDG60_02235 PF00467 KOW motif CDG60_02240 PF00298 Ribosomal protein L11, RNA binding domain CDG60_02240 PF03946 Ribosomal protein L11, N-terminal domain CDG60_02245 PF00687 Ribosomal protein L1p/L10e family CDG60_02250 PF00466 Ribosomal protein L10 CDG60_02255 PF16320 Ribosomal protein L7/L12 dimerisation domain CDG60_02255 PF00542 Ribosomal protein L7/L12 C-terminal domain CDG60_02260 PF04561 RNA polymerase Rpb2, domain 2 CDG60_02260 PF04560 RNA polymerase Rpb2, domain 7 CDG60_02260 PF04563 RNA polymerase beta subunit CDG60_02260 PF04565 RNA polymerase Rpb2, domain 3 CDG60_02260 PF00562 RNA polymerase Rpb2, domain 6 CDG60_02260 PF10385 RNA polymerase beta subunit external 1 domain CDG60_02265 PF04997 RNA polymerase Rpb1, domain 1 CDG60_02265 PF00623 RNA polymerase Rpb1, domain 2 CDG60_02265 PF04983 RNA polymerase Rpb1, domain 3 CDG60_02265 PF05000 RNA polymerase Rpb1, domain 4 CDG60_02265 PF04998 RNA polymerase Rpb1, domain 5 CDG60_02280 PF00561 alpha/beta hydrolase fold CDG60_02285 PF13726 Na+-H+ antiporter family CDG60_02285 PF03553 Na+/H+ antiporter family CDG60_02305 PF00183 Hsp90 protein CDG60_02305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_02330 PF01323 DSBA-like thioredoxin domain CDG60_02350 PF03848 Tellurite resistance protein TehB CDG60_02350 PF09313 Domain of unknown function (DUF1971) CDG60_02355 PF02803 Thiolase, C-terminal domain CDG60_02355 PF00108 Thiolase, N-terminal domain CDG60_02360 PF00378 Enoyl-CoA hydratase/isomerase CDG60_02360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDG60_02360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDG60_02385 PF07724 AAA domain (Cdc48 subfamily) CDG60_02385 PF10431 C-terminal, D2-small domain, of ClpB protein CDG60_02395 PF08459 UvrC Helix-hairpin-helix N-terminal CDG60_02395 PF02151 UvrB/uvrC motif CDG60_02395 PF01541 GIY-YIG catalytic domain CDG60_02405 PF01066 CDP-alcohol phosphatidyltransferase CDG60_02410 PF00005 ABC transporter CDG60_02410 PF00664 ABC transporter transmembrane region CDG60_02420 PF02525 Flavodoxin-like fold CDG60_02430 PF04632 Fusaric acid resistance protein family CDG60_02440 PF13533 Biotin-lipoyl like CDG60_02450 PF03652 Holliday junction resolvase CDG60_02455 PF02622 Uncharacterized ACR, COG1678 CDG60_02460 PF02463 RecF/RecN/SMC N terminal domain CDG60_02470 PF06865 Pyrimidine/purine nucleoside phosphorylase CDG60_02475 PF00588 SpoU rRNA Methylase family CDG60_02475 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDG60_02485 PF01121 Dephospho-CoA kinase CDG60_02490 PF01478 Type IV leader peptidase family CDG60_02490 PF06750 Bacterial Peptidase A24 N-terminal domain CDG60_02495 PF00482 Type II secretion system (T2SS), protein F CDG60_02500 PF00437 Type II/IV secretion system protein CDG60_02500 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDG60_02505 PF00121 Triosephosphate isomerase CDG60_02510 PF03840 Preprotein translocase SecG subunit CDG60_02535 PF17384 RimP C-terminal SH3 domain CDG60_02535 PF02576 RimP N-terminal domain CDG60_02540 PF08529 NusA N-terminal domain CDG60_02540 PF00575 S1 RNA binding domain CDG60_02540 PF13184 NusA-like KH domain CDG60_02545 PF04760 Translation initiation factor IF-2, N-terminal region CDG60_02545 PF08364 Bacterial translation initiation factor IF-2 associated region CDG60_02545 PF11987 Translation-initiation factor 2 CDG60_02545 PF00009 Elongation factor Tu GTP binding domain CDG60_02550 PF02033 Ribosome-binding factor A CDG60_02560 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CDG60_02570 PF00361 Proton-conducting membrane transporter CDG60_02575 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDG60_02580 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CDG60_02580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDG60_02580 PF13244 Domain of unknown function (DUF4040) CDG60_02580 PF00361 Proton-conducting membrane transporter CDG60_02585 PF00005 ABC transporter CDG60_02595 PF01502 Phosphoribosyl-AMP cyclohydrolase CDG60_02600 PF01494 FAD binding domain CDG60_02620 PF03109 ABC1 family CDG60_02630 PF01209 ubiE/COQ5 methyltransferase family CDG60_02640 PF03976 Polyphosphate kinase 2 (PPK2) CDG60_02650 PF17946 RecC C-terminal domain CDG60_02655 PF00580 UvrD/REP helicase N-terminal domain CDG60_02655 PF12705 PD-(D/E)XK nuclease superfamily CDG60_02655 PF13361 UvrD-like helicase C-terminal domain CDG60_02660 PF13538 UvrD-like helicase C-terminal domain CDG60_02670 PF00312 Ribosomal protein S15 CDG60_02675 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDG60_02675 PF00013 KH domain CDG60_02675 PF01138 3' exoribonuclease family, domain 1 CDG60_02675 PF00575 S1 RNA binding domain CDG60_02675 PF03725 3' exoribonuclease family, domain 2 CDG60_02680 PF01544 CorA-like Mg2+ transporter protein CDG60_02695 PF00226 DnaJ domain CDG60_02695 PF01556 DnaJ C terminal domain CDG60_02715 PF01430 Hsp33 protein CDG60_02720 PF02254 TrkA-N domain CDG60_02720 PF00999 Sodium/hydrogen exchanger family CDG60_02725 PF18074 Primosomal protein N C-terminal domain CDG60_02725 PF17764 3′ DNA-binding domain (3′BD) CDG60_02725 PF00271 Helicase conserved C-terminal domain CDG60_02725 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDG60_02725 PF00270 DEAD/DEAH box helicase CDG60_02730 PF00482 Type II secretion system (T2SS), protein F CDG60_02735 PF08334 Type II secretion system (T2SS), protein G CDG60_02735 PF07963 Prokaryotic N-terminal methylation motif CDG60_02755 PF00795 Carbon-nitrogen hydrolase CDG60_02760 PF00571 CBS domain CDG60_02760 PF03471 Transporter associated domain CDG60_02765 PF01206 Sulfurtransferase TusA CDG60_02780 PF01177 Asp/Glu/Hydantoin racemase CDG60_02790 PF00762 Ferrochelatase CDG60_02795 PF00753 Metallo-beta-lactamase superfamily CDG60_02800 PF03884 DNA gyrase inhibitor YacG CDG60_02810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDG60_02810 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_02850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG60_02850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG60_02875 PF02092 Glycyl-tRNA synthetase beta subunit CDG60_02875 PF05746 DALR anticodon binding domain CDG60_02880 PF02091 Glycyl-tRNA synthetase alpha subunit CDG60_02900 PF04024 PspC domain CDG60_02930 PF00501 AMP-binding enzyme CDG60_02930 PF13193 AMP-binding enzyme C-terminal domain CDG60_02935 PF12111 Polyribonucleotide phosphorylase C terminal CDG60_02935 PF00575 S1 RNA binding domain CDG60_02935 PF10150 Ribonuclease E/G family CDG60_02945 PF00849 RNA pseudouridylate synthase CDG60_02945 PF01479 S4 domain CDG60_02950 PF13419 Haloacid dehalogenase-like hydrolase CDG60_02955 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDG60_02960 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDG60_02960 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG60_02965 PF00682 HMGL-like CDG60_02965 PF07836 DmpG-like communication domain CDG60_02970 PF03573 outer membrane porin, OprD family CDG60_02975 PF00561 alpha/beta hydrolase fold CDG60_02985 PF03466 LysR substrate binding domain CDG60_02985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_02990 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDG60_02990 PF00355 Rieske [2Fe-2S] domain CDG60_02995 PF00866 Ring hydroxylating beta subunit CDG60_03000 PF00355 Rieske [2Fe-2S] domain CDG60_03005 PF00106 short chain dehydrogenase CDG60_03010 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDG60_03015 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_03015 PF14759 Reductase C-terminal CDG60_03025 PF13673 Acetyltransferase (GNAT) domain CDG60_03035 PF12706 Beta-lactamase superfamily domain CDG60_03040 PF00141 Peroxidase CDG60_03050 PF12833 Helix-turn-helix domain CDG60_03085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_03085 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_03085 PF18158 Adaptive response protein AidB N-terminal domain CDG60_03105 PF00391 PEP-utilising enzyme, mobile domain CDG60_03105 PF01590 GAF domain CDG60_03105 PF05524 PEP-utilising enzyme, N-terminal CDG60_03105 PF02896 PEP-utilising enzyme, TIM barrel domain CDG60_03110 PF00293 NUDIX domain CDG60_03125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_03125 PF03466 LysR substrate binding domain CDG60_03145 PF00330 Aconitase family (aconitate hydratase) CDG60_03150 PF00694 Aconitase C-terminal domain CDG60_03160 PF00180 Isocitrate/isopropylmalate dehydrogenase CDG60_03170 PF01176 Translation initiation factor 1A / IF-1 CDG60_03180 PF01416 tRNA pseudouridine synthase CDG60_03200 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDG60_03200 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG60_03220 PF03279 Bacterial lipid A biosynthesis acyltransferase CDG60_03245 PF01638 HxlR-like helix-turn-helix CDG60_03255 PF08272 Topoisomerase I zinc-ribbon-like CDG60_03255 PF01396 Topoisomerase DNA binding C4 zinc finger CDG60_03255 PF01751 Toprim domain CDG60_03255 PF01131 DNA topoisomerase CDG60_03260 PF09297 NADH pyrophosphatase zinc ribbon domain CDG60_03260 PF00293 NUDIX domain CDG60_03280 PF02595 Glycerate kinase family CDG60_03285 PF13361 UvrD-like helicase C-terminal domain CDG60_03285 PF00580 UvrD/REP helicase N-terminal domain CDG60_03290 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CDG60_03310 PF02254 TrkA-N domain CDG60_03310 PF00999 Sodium/hydrogen exchanger family CDG60_03315 PF00471 Ribosomal protein L33 CDG60_03320 PF00830 Ribosomal L28 family CDG60_03325 PF00171 Aldehyde dehydrogenase family CDG60_03330 PF00440 Bacterial regulatory proteins, tetR family CDG60_03330 PF08360 QacR-like protein, C-terminal region CDG60_03335 PF00551 Formyl transferase CDG60_03335 PF01842 ACT domain CDG60_03345 PF01618 MotA/TolQ/ExbB proton channel family CDG60_03365 PF03631 Virulence factor BrkB CDG60_03370 PF03358 NADPH-dependent FMN reductase CDG60_03390 PF00933 Glycosyl hydrolase family 3 N terminal domain CDG60_03395 PF03572 Peptidase family S41 CDG60_03395 PF17804 Tail specific protease N-terminal domain CDG60_03395 PF11818 C-terminal domain of tail specific protease (DUF3340) CDG60_03395 PF00595 PDZ domain CDG60_03400 PF00563 EAL domain CDG60_03400 PF00990 Diguanylate cyclase, GGDEF domain CDG60_03400 PF03707 Bacterial signalling protein N terminal repeat CDG60_03405 PF00009 Elongation factor Tu GTP binding domain CDG60_03405 PF03144 Elongation factor Tu domain 2 CDG60_03405 PF16658 Class II release factor RF3, C-terminal domain CDG60_03420 PF01026 TatD related DNase CDG60_03435 PF00899 ThiF family CDG60_03460 PF01207 Dihydrouridine synthase (Dus) CDG60_03465 PF00589 Phage integrase family CDG60_03555 PF18273 Type III R-M EcoP15I C-terminal domain CDG60_03555 PF01555 DNA methylase CDG60_03560 PF08774 VRR-NUC domain CDG60_03560 PF04851 Type III restriction enzyme, res subunit CDG60_03575 PF17757 UvrB interaction domain CDG60_03575 PF12344 Ultra-violet resistance protein B CDG60_03575 PF02151 UvrB/uvrC motif CDG60_03575 PF04851 Type III restriction enzyme, res subunit CDG60_03575 PF00271 Helicase conserved C-terminal domain CDG60_03595 PF07690 Major Facilitator Superfamily CDG60_03605 PF09278 MerR, DNA binding CDG60_03605 PF00376 MerR family regulatory protein CDG60_03620 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDG60_03620 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDG60_03625 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDG60_03630 PF02233 NAD(P) transhydrogenase beta subunit CDG60_03640 PF13936 Helix-turn-helix domain CDG60_03640 PF00665 Integrase core domain CDG60_03655 PF00672 HAMP domain CDG60_03655 PF00909 Ammonium Transporter Family CDG60_03665 PF01261 Xylose isomerase-like TIM barrel CDG60_03670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDG60_03670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDG60_03675 PF00378 Enoyl-CoA hydratase/isomerase CDG60_03680 PF00512 His Kinase A (phospho-acceptor) domain CDG60_03680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_03680 PF01627 Hpt domain CDG60_03680 PF00672 HAMP domain CDG60_03680 PF00072 Response regulator receiver domain CDG60_03680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDG60_03685 PF00291 Pyridoxal-phosphate dependent enzyme CDG60_03695 PF05958 tRNA (Uracil-5-)-methyltransferase CDG60_03700 PF13291 ACT domain CDG60_03700 PF02824 TGS domain CDG60_03700 PF04607 Region found in RelA / SpoT proteins CDG60_03710 PF07549 SecD/SecF GG Motif CDG60_03710 PF02355 Protein export membrane protein CDG60_03715 PF02355 Protein export membrane protein CDG60_03715 PF13721 SecD export protein N-terminal TM region CDG60_03715 PF07549 SecD/SecF GG Motif CDG60_03720 PF02699 Preprotein translocase subunit CDG60_03725 PF01702 Queuine tRNA-ribosyltransferase CDG60_03730 PF04011 LemA family CDG60_03740 PF02547 Queuosine biosynthesis protein CDG60_03750 PF00512 His Kinase A (phospho-acceptor) domain CDG60_03750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_03750 PF09456 RcsC Alpha-Beta-Loop (ABL) CDG60_03750 PF00072 Response regulator receiver domain CDG60_03755 PF08335 GlnD PII-uridylyltransferase CDG60_03755 PF03710 Glutamate-ammonia ligase adenylyltransferase CDG60_03760 PF01063 Amino-transferase class IV CDG60_03765 PF01370 NAD dependent epimerase/dehydratase family CDG60_03770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG60_03770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG60_03780 PF17103 Stealth protein CR4, conserved region 4 CDG60_03780 PF17101 Stealth protein CR1, conserved region 1 CDG60_03780 PF11380 Stealth protein CR2, conserved region 2 CDG60_03780 PF17102 Stealth protein CR3, conserved region 3 CDG60_03790 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CDG60_03800 PF16363 GDP-mannose 4,6 dehydratase CDG60_03805 PF00483 Nucleotidyl transferase CDG60_03810 PF05523 WxcM-like, C-terminal CDG60_03825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDG60_03830 PF00535 Glycosyl transferase family 2 CDG60_03850 PF01336 OB-fold nucleic acid binding domain CDG60_03850 PF00152 tRNA synthetases class II (D, K and N) CDG60_03850 PF02938 GAD domain CDG60_03860 PF07715 TonB-dependent Receptor Plug Domain CDG60_03860 PF00593 TonB dependent receptor CDG60_03880 PF06146 Phosphate-starvation-inducible E CDG60_03900 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_03900 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG60_03900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_03900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_03905 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_03905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_03905 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG60_03905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_03920 PF00512 His Kinase A (phospho-acceptor) domain CDG60_03920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_03920 PF00672 HAMP domain CDG60_03925 PF00486 Transcriptional regulatory protein, C terminal CDG60_03925 PF00072 Response regulator receiver domain CDG60_03930 PF04237 YjbR CDG60_03950 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CDG60_03970 PF01923 Cobalamin adenosyltransferase CDG60_03975 PF07715 TonB-dependent Receptor Plug Domain CDG60_03975 PF00593 TonB dependent receptor CDG60_03985 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDG60_03990 PF00291 Pyridoxal-phosphate dependent enzyme CDG60_04005 PF00884 Sulfatase CDG60_04005 PF11893 Domain of unknown function (DUF3413) CDG60_04020 PF12833 Helix-turn-helix domain CDG60_04020 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG60_04025 PF00290 Tryptophan synthase alpha chain CDG60_04030 PF01039 Carboxyl transferase domain CDG60_04035 PF08245 Mur ligase middle domain CDG60_04035 PF02875 Mur ligase family, glutamate ligase domain CDG60_04050 PF00753 Metallo-beta-lactamase superfamily CDG60_04055 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDG60_04055 PF00578 AhpC/TSA family CDG60_04060 PF02810 SEC-C motif CDG60_04060 PF01043 SecA preprotein cross-linking domain CDG60_04060 PF07516 SecA Wing and Scaffold domain CDG60_04060 PF07517 SecA DEAD-like domain CDG60_04070 PF01960 ArgJ family CDG60_04075 PF02445 Quinolinate synthetase A protein CDG60_04100 PF05736 OprF membrane domain CDG60_04100 PF00691 OmpA family CDG60_04105 PF00990 Diguanylate cyclase, GGDEF domain CDG60_04105 PF17152 Periplasmic sensor domain CDG60_04110 PF13689 YfiR/HmsC-like CDG60_04170 PF04386 Stringent starvation protein B CDG60_04175 PF02798 Glutathione S-transferase, N-terminal domain CDG60_04175 PF00043 Glutathione S-transferase, C-terminal domain CDG60_04180 PF00380 Ribosomal protein S9/S16 CDG60_04185 PF00572 Ribosomal protein L13 CDG60_04190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDG60_04195 PF00398 Ribosomal RNA adenine dimethylase CDG60_04200 PF00149 Calcineurin-like phosphoesterase CDG60_04230 PF16360 GTP-binding GTPase Middle Region CDG60_04230 PF13167 GTP-binding GTPase N-terminal CDG60_04230 PF01926 50S ribosome-binding GTPase CDG60_04240 PF13091 PLD-like domain CDG60_04245 PF00149 Calcineurin-like phosphoesterase CDG60_04255 PF00083 Sugar (and other) transporter CDG60_04255 PF07690 Major Facilitator Superfamily CDG60_04260 PF03006 Haemolysin-III related CDG60_04270 PF13673 Acetyltransferase (GNAT) domain CDG60_04275 PF13419 Haloacid dehalogenase-like hydrolase CDG60_04290 PF01037 Lrp/AsnC ligand binding domain CDG60_04295 PF00378 Enoyl-CoA hydratase/isomerase CDG60_04295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDG60_04295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDG60_04300 PF00108 Thiolase, N-terminal domain CDG60_04300 PF02803 Thiolase, C-terminal domain CDG60_04305 PF12833 Helix-turn-helix domain CDG60_04305 PF02311 AraC-like ligand binding domain CDG60_04310 PF02515 CoA-transferase family III CDG60_04315 PF04966 Carbohydrate-selective porin, OprB family CDG60_04320 PF01011 PQQ enzyme repeat CDG60_04325 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDG60_04325 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDG60_04335 PF01113 Dihydrodipicolinate reductase, N-terminus CDG60_04335 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CDG60_04340 PF00893 Small Multidrug Resistance protein CDG60_04355 PF00108 Thiolase, N-terminal domain CDG60_04355 PF02803 Thiolase, C-terminal domain CDG60_04365 PF13505 Outer membrane protein beta-barrel domain CDG60_04365 PF00691 OmpA family CDG60_04375 PF00293 NUDIX domain CDG60_04380 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_04385 PF00814 Glycoprotease family CDG60_04390 PF02673 Bacitracin resistance protein BacA CDG60_04395 PF04445 Putative SAM-dependent methyltransferase CDG60_04405 PF00756 Putative esterase CDG60_04410 PF05987 Bacterial protein of unknown function (DUF898) CDG60_04420 PF00834 Ribulose-phosphate 3 epimerase family CDG60_04430 PF07731 Multicopper oxidase CDG60_04430 PF07732 Multicopper oxidase CDG60_04430 PF00394 Multicopper oxidase CDG60_04445 PF00893 Small Multidrug Resistance protein CDG60_04450 PF00893 Small Multidrug Resistance protein CDG60_04455 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDG60_04455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDG60_04470 PF02581 Thiamine monophosphate synthase CDG60_04470 PF03070 TENA/THI-4/PQQC family CDG60_04470 PF08543 Phosphomethylpyrimidine kinase CDG60_04475 PF13419 Haloacid dehalogenase-like hydrolase CDG60_04480 PF01037 Lrp/AsnC ligand binding domain CDG60_04485 PF01266 FAD dependent oxidoreductase CDG60_04490 PF00842 Alanine racemase, C-terminal domain CDG60_04490 PF01168 Alanine racemase, N-terminal domain CDG60_04495 PF01042 Endoribonuclease L-PSP CDG60_04500 PF00324 Amino acid permease CDG60_04505 PF01757 Acyltransferase family CDG60_04510 PF00701 Dihydrodipicolinate synthetase family CDG60_04525 PF00109 Beta-ketoacyl synthase, N-terminal domain CDG60_04525 PF02801 Beta-ketoacyl synthase, C-terminal domain CDG60_04535 PF00164 Ribosomal protein S12/S23 CDG60_04540 PF00177 Ribosomal protein S7p/S5e CDG60_04545 PF03764 Elongation factor G, domain IV CDG60_04545 PF00009 Elongation factor Tu GTP binding domain CDG60_04545 PF03144 Elongation factor Tu domain 2 CDG60_04545 PF14492 Elongation Factor G, domain II CDG60_04545 PF00679 Elongation factor G C-terminus CDG60_04550 PF00009 Elongation factor Tu GTP binding domain CDG60_04550 PF03143 Elongation factor Tu C-terminal domain CDG60_04550 PF03144 Elongation factor Tu domain 2 CDG60_04560 PF00583 Acetyltransferase (GNAT) family CDG60_04565 PF04377 Arginine-tRNA-protein transferase, C terminus CDG60_04565 PF04376 Arginine-tRNA-protein transferase, N terminus CDG60_04570 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDG60_04575 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_04580 PF09397 Ftsk gamma domain CDG60_04580 PF01580 FtsK/SpoIIIE family CDG60_04580 PF17854 FtsK alpha domain CDG60_04580 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDG60_04595 PF03776 Septum formation topological specificity factor MinE CDG60_04600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDG60_04605 PF03775 Septum formation inhibitor MinC, C-terminal domain CDG60_04615 PF01553 Acyltransferase CDG60_04620 PF00691 OmpA family CDG60_04620 PF13488 Glycine zipper CDG60_04625 PF00580 UvrD/REP helicase N-terminal domain CDG60_04625 PF13361 UvrD-like helicase C-terminal domain CDG60_04630 PF00692 dUTPase CDG60_04635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG60_04635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG60_04635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG60_04635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG60_04640 PF00696 Amino acid kinase family CDG60_04650 PF13230 Glutamine amidotransferases class-II CDG60_04655 PF01814 Hemerythrin HHE cation binding domain CDG60_04665 PF03658 RnfH family Ubiquitin CDG60_04670 PF04355 SmpA / OmlA family CDG60_04675 PF01475 Ferric uptake regulator family CDG60_04680 PF00437 Type II/IV secretion system protein CDG60_04685 PF00437 Type II/IV secretion system protein CDG60_04690 PF01168 Alanine racemase, N-terminal domain CDG60_04715 PF12320 Type 5 capsule protein repressor C-terminal domain CDG60_04715 PF00149 Calcineurin-like phosphoesterase CDG60_04750 PF00849 RNA pseudouridylate synthase CDG60_04755 PF00583 Acetyltransferase (GNAT) family CDG60_04770 PF04343 Protein of unknown function, DUF488 CDG60_04775 PF03831 PhnA domain CDG60_04775 PF08274 PhnA Zinc-Ribbon CDG60_04785 PF07411 Domain of unknown function (DUF1508) CDG60_04810 PF06674 Protein of unknown function (DUF1176) CDG60_04815 PF01207 Dihydrouridine synthase (Dus) CDG60_04830 PF02978 Signal peptide binding domain CDG60_04830 PF02881 SRP54-type protein, helical bundle domain CDG60_04830 PF00448 SRP54-type protein, GTPase domain CDG60_04845 PF03309 Type III pantothenate kinase CDG60_04855 PF01925 Sulfite exporter TauE/SafE CDG60_04865 PF02463 RecF/RecN/SMC N terminal domain CDG60_04865 PF06470 SMC proteins Flexible Hinge Domain CDG60_04875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDG60_04875 PF00533 BRCA1 C Terminus (BRCT) domain CDG60_04875 PF12826 Helix-hairpin-helix motif CDG60_04875 PF01653 NAD-dependent DNA ligase adenylation domain CDG60_04875 PF03120 NAD-dependent DNA ligase OB-fold domain CDG60_04880 PF07715 TonB-dependent Receptor Plug Domain CDG60_04880 PF00593 TonB dependent receptor CDG60_04900 PF00210 Ferritin-like domain CDG60_04905 PF00578 AhpC/TSA family CDG60_04910 PF00561 alpha/beta hydrolase fold CDG60_04915 PF00202 Aminotransferase class-III CDG60_04915 PF04055 Radical SAM superfamily CDG60_04915 PF06968 Biotin and Thiamin Synthesis associated domain CDG60_04920 PF00155 Aminotransferase class I and II CDG60_04945 PF01479 S4 domain CDG60_04945 PF00849 RNA pseudouridylate synthase CDG60_04950 PF04079 Segregation and condensation complex subunit ScpB CDG60_04955 PF02616 Segregation and condensation protein ScpA CDG60_04970 PF01300 Telomere recombination CDG60_04975 PF04315 Elongation factor P hydroxylase CDG60_04980 PF02620 Large ribosomal RNA subunit accumulation protein YceD CDG60_04985 PF01783 Ribosomal L32p protein family CDG60_04990 PF00698 Acyl transferase domain CDG60_05000 PF00550 Phosphopantetheine attachment site CDG60_05005 PF04972 BON domain CDG60_05005 PF01476 LysM domain CDG60_05010 PF17803 Bacterial cadherin-like domain CDG60_05065 PF00268 Ribonucleotide reductase, small chain CDG60_05075 PF00317 Ribonucleotide reductase, all-alpha domain CDG60_05075 PF02867 Ribonucleotide reductase, barrel domain CDG60_05075 PF03477 ATP cone domain CDG60_05080 PF00486 Transcriptional regulatory protein, C terminal CDG60_05080 PF00072 Response regulator receiver domain CDG60_05085 PF00672 HAMP domain CDG60_05085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_05085 PF00512 His Kinase A (phospho-acceptor) domain CDG60_05090 PF00474 Sodium:solute symporter family CDG60_05095 PF01145 SPFH domain / Band 7 family CDG60_05105 PF01734 Patatin-like phospholipase CDG60_05125 PF08019 Phosphoethanolamine transferase EptA/EptB CDG60_05125 PF00884 Sulfatase CDG60_05130 PF00486 Transcriptional regulatory protein, C terminal CDG60_05130 PF00072 Response regulator receiver domain CDG60_05135 PF00512 His Kinase A (phospho-acceptor) domain CDG60_05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_05135 PF08521 Two-component sensor kinase N-terminal CDG60_05150 PF00909 Ammonium Transporter Family CDG60_05160 PF00005 ABC transporter CDG60_05165 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_05170 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_05175 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDG60_05185 PF04480 Protein of unknown function (DUF559) CDG60_05200 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CDG60_05210 PF10458 Valyl tRNA synthetase tRNA binding arm CDG60_05210 PF08264 Anticodon-binding domain of tRNA CDG60_05210 PF00133 tRNA synthetases class I (I, L, M and V) CDG60_05230 PF01906 Putative heavy-metal-binding CDG60_05235 PF01906 Putative heavy-metal-binding CDG60_05240 PF02321 Outer membrane efflux protein CDG60_05245 PF00873 AcrB/AcrD/AcrF family CDG60_05250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG60_05250 PF00529 HlyD membrane-fusion protein of T1SS CDG60_05255 PF01569 PAP2 superfamily CDG60_05265 PF00348 Polyprenyl synthetase CDG60_05270 PF00829 Ribosomal prokaryotic L21 protein CDG60_05275 PF01016 Ribosomal L27 protein CDG60_05280 PF03548 Outer membrane lipoprotein carrier protein LolA CDG60_05295 PF02403 Seryl-tRNA synthetase N-terminal domain CDG60_05295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG60_05300 PF10414 Sirohaem synthase dimerisation region CDG60_05300 PF14824 Sirohaem biosynthesis protein central CDG60_05300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDG60_05305 PF00588 SpoU rRNA Methylase family CDG60_05315 PF13520 Amino acid permease CDG60_05325 PF00465 Iron-containing alcohol dehydrogenase CDG60_05335 PF03099 Biotin/lipoate A/B protein ligase family CDG60_05340 PF04359 Protein of unknown function (DUF493) CDG60_05345 PF04546 Sigma-70, non-essential region CDG60_05345 PF03979 Sigma-70 factor, region 1.1 CDG60_05345 PF00140 Sigma-70 factor, region 1.2 CDG60_05345 PF04542 Sigma-70 region 2 CDG60_05345 PF04539 Sigma-70 region 3 CDG60_05345 PF04545 Sigma-70, region 4 CDG60_05365 PF09335 SNARE associated Golgi protein CDG60_05380 PF01810 LysE type translocator CDG60_05385 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDG60_05400 PF02261 Aspartate decarboxylase CDG60_05405 PF01195 Peptidyl-tRNA hydrolase CDG60_05410 PF01386 Ribosomal L25p family CDG60_05415 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDG60_05415 PF14572 Phosphoribosyl synthetase-associated domain CDG60_05440 PF08544 GHMP kinases C terminal CDG60_05440 PF00288 GHMP kinases N terminal domain CDG60_05445 PF03550 Outer membrane lipoprotein LolB CDG60_05455 PF01488 Shikimate / quinate 5-dehydrogenase CDG60_05455 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CDG60_05455 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CDG60_05460 PF01807 CHC2 zinc finger CDG60_05460 PF08275 DNA primase catalytic core, N-terminal domain CDG60_05460 PF10410 DnaB-helicase binding domain of primase CDG60_05460 PF08278 DNA primase DnaG DnaB-binding CDG60_05465 PF13525 Outer membrane lipoprotein CDG60_05470 PF00849 RNA pseudouridylate synthase CDG60_05470 PF01479 S4 domain CDG60_05480 PF03358 NADPH-dependent FMN reductase CDG60_05500 PF01668 SmpB protein CDG60_05505 PF01467 Cytidylyltransferase-like CDG60_05510 PF00037 4Fe-4S binding domain CDG60_05545 PF02540 NAD synthase CDG60_05545 PF00795 Carbon-nitrogen hydrolase CDG60_05565 PF00106 short chain dehydrogenase CDG60_05570 PF00743 Flavin-binding monooxygenase-like CDG60_05575 PF00285 Citrate synthase, C-terminal domain CDG60_05580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDG60_05585 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDG60_05590 PF02910 Fumarate reductase flavoprotein C-term CDG60_05590 PF00890 FAD binding domain CDG60_05595 PF13085 2Fe-2S iron-sulfur cluster binding domain CDG60_05600 PF02779 Transketolase, pyrimidine binding domain CDG60_05600 PF16870 2-oxoglutarate dehydrogenase C-terminal CDG60_05600 PF00676 Dehydrogenase E1 component CDG60_05600 PF16078 2-oxoglutarate dehydrogenase N-terminus CDG60_05605 PF02817 e3 binding domain CDG60_05605 PF00364 Biotin-requiring enzyme CDG60_05605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDG60_05610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG60_05610 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_05615 PF08442 ATP-grasp domain CDG60_05615 PF00549 CoA-ligase CDG60_05620 PF00549 CoA-ligase CDG60_05620 PF02629 CoA binding domain CDG60_05625 PF15975 Flotillin CDG60_05625 PF01145 SPFH domain / Band 7 family CDG60_05630 PF07290 Protein of unknown function (DUF1449) CDG60_05635 PF00579 tRNA synthetases class I (W and Y) CDG60_05640 PF05661 Protein of unknown function (DUF808) CDG60_05645 PF04228 Putative neutral zinc metallopeptidase CDG60_05650 PF00999 Sodium/hydrogen exchanger family CDG60_05710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDG60_05715 PF00582 Universal stress protein family CDG60_05725 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_05730 PF04072 Leucine carboxyl methyltransferase CDG60_05735 PF03449 Transcription elongation factor, N-terminal CDG60_05735 PF01272 Transcription elongation factor, GreA/GreB, C-term CDG60_05740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDG60_05740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG60_05740 PF02142 MGS-like domain CDG60_05745 PF00117 Glutamine amidotransferase class-I CDG60_05745 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDG60_05760 PF01985 CRS1 / YhbY (CRM) domain CDG60_05765 PF01728 FtsJ-like methyltransferase CDG60_05770 PF01434 Peptidase family M41 CDG60_05770 PF00004 ATPase family associated with various cellular activities (AAA) CDG60_05770 PF06480 FtsH Extracellular CDG60_05770 PF17862 AAA+ lid domain CDG60_05775 PF00809 Pterin binding enzyme CDG60_05820 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDG60_05820 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDG60_05835 PF00083 Sugar (and other) transporter CDG60_05845 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDG60_05845 PF01266 FAD dependent oxidoreductase CDG60_05850 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CDG60_05850 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CDG60_05855 PF00781 Diacylglycerol kinase catalytic domain CDG60_05865 PF00166 Chaperonin 10 Kd subunit CDG60_05870 PF00118 TCP-1/cpn60 chaperonin family CDG60_05875 PF05658 Head domain of trimeric autotransporter adhesin CDG60_05875 PF03895 YadA-like membrane anchor domain CDG60_05875 PF05662 Coiled stalk of trimeric autotransporter adhesin CDG60_05875 PF13018 Extended Signal Peptide of Type V secretion system CDG60_05885 PF01219 Prokaryotic diacylglycerol kinase CDG60_05890 PF03009 Glycerophosphoryl diester phosphodiesterase family CDG60_05895 PF00873 AcrB/AcrD/AcrF family CDG60_05900 PF03448 MgtE intracellular N domain CDG60_05900 PF01769 Divalent cation transporter CDG60_05900 PF00571 CBS domain CDG60_05915 PF01435 Peptidase family M48 CDG60_05920 PF01464 Transglycosylase SLT domain CDG60_05920 PF01551 Peptidase family M23 CDG60_05920 PF10145 Phage-related minor tail protein CDG60_05925 PF01171 PP-loop family CDG60_05935 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDG60_05935 PF01464 Transglycosylase SLT domain CDG60_05940 PF01272 Transcription elongation factor, GreA/GreB, C-term CDG60_05940 PF03449 Transcription elongation factor, N-terminal CDG60_05970 PF03695 Uncharacterised protein family (UPF0149) CDG60_05975 PF05195 Aminopeptidase P, N-terminal domain CDG60_05975 PF00557 Metallopeptidase family M24 CDG60_05985 PF03055 Retinal pigment epithelial membrane protein CDG60_06000 PF01494 FAD binding domain CDG60_06005 PF01494 FAD binding domain CDG60_06015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDG60_06020 PF02021 Uncharacterised protein family UPF0102 CDG60_06025 PF04972 BON domain CDG60_06030 PF00135 Carboxylesterase family CDG60_06035 PF00293 NUDIX domain CDG60_06035 PF09297 NADH pyrophosphatase zinc ribbon domain CDG60_06045 PF00929 Exonuclease CDG60_06050 PF01476 LysM domain CDG60_06050 PF01464 Transglycosylase SLT domain CDG60_06055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDG60_06060 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_06065 PF12911 N-terminal TM domain of oligopeptide transport permease C CDG60_06065 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_06070 PF00005 ABC transporter CDG60_06070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDG60_06075 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_06075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG60_06090 PF01743 Poly A polymerase head domain CDG60_06090 PF12627 Probable RNA and SrmB- binding site of polymerase A CDG60_06095 PF03949 Malic enzyme, NAD binding domain CDG60_06095 PF01515 Phosphate acetyl/butaryl transferase CDG60_06095 PF00390 Malic enzyme, N-terminal domain CDG60_06100 PF13188 PAS domain CDG60_06100 PF03707 Bacterial signalling protein N terminal repeat CDG60_06100 PF00990 Diguanylate cyclase, GGDEF domain CDG60_06100 PF00563 EAL domain CDG60_06105 PF04452 RNA methyltransferase CDG60_06110 PF02219 Methylenetetrahydrofolate reductase CDG60_06115 PF05221 S-adenosyl-L-homocysteine hydrolase CDG60_06115 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDG60_06155 PF00589 Phage integrase family CDG60_06210 PF00324 Amino acid permease CDG60_06220 PF00324 Amino acid permease CDG60_06225 PF07715 TonB-dependent Receptor Plug Domain CDG60_06235 PF00929 Exonuclease CDG60_06240 PF01979 Amidohydrolase family CDG60_06245 PF08448 PAS fold CDG60_06245 PF00990 Diguanylate cyclase, GGDEF domain CDG60_06250 PF00990 Diguanylate cyclase, GGDEF domain CDG60_06250 PF00563 EAL domain CDG60_06250 PF01590 GAF domain CDG60_06250 PF00360 Phytochrome region CDG60_06255 PF00764 Arginosuccinate synthase CDG60_06260 PF03466 LysR substrate binding domain CDG60_06260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_06265 PF00892 EamA-like transporter family CDG60_06275 PF02652 L-lactate permease CDG60_06280 PF07729 FCD domain CDG60_06280 PF00392 Bacterial regulatory proteins, gntR family CDG60_06285 PF01070 FMN-dependent dehydrogenase CDG60_06290 PF09330 D-lactate dehydrogenase, membrane binding CDG60_06290 PF01565 FAD binding domain CDG60_06300 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_06300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG60_06315 PF01126 Heme oxygenase CDG60_06335 PF00593 TonB dependent receptor CDG60_06335 PF07715 TonB-dependent Receptor Plug Domain CDG60_06350 PF00245 Alkaline phosphatase CDG60_06355 PF00245 Alkaline phosphatase CDG60_06365 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG60_06365 PF12833 Helix-turn-helix domain CDG60_06370 PF00990 Diguanylate cyclase, GGDEF domain CDG60_06370 PF00072 Response regulator receiver domain CDG60_06380 PF02333 Phytase CDG60_06385 PF01618 MotA/TolQ/ExbB proton channel family CDG60_06390 PF02472 Biopolymer transport protein ExbD/TolR CDG60_06425 PF00691 OmpA family CDG60_06425 PF04972 BON domain CDG60_06430 PF00596 Class II Aldolase and Adducin N-terminal domain CDG60_06440 PF18073 Rubredoxin metal binding domain CDG60_06445 PF01235 Sodium:alanine symporter family CDG60_06450 PF00324 Amino acid permease CDG60_06460 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDG60_06460 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDG60_06465 PF01678 Diaminopimelate epimerase CDG60_06470 PF02899 Phage integrase, N-terminal SAM-like domain CDG60_06470 PF00589 Phage integrase family CDG60_06480 PF13302 Acetyltransferase (GNAT) domain CDG60_06485 PF01012 Electron transfer flavoprotein domain CDG60_06490 PF00766 Electron transfer flavoprotein FAD-binding domain CDG60_06490 PF01012 Electron transfer flavoprotein domain CDG60_06505 PF00521 DNA gyrase/topoisomerase IV, subunit A CDG60_06505 PF03989 DNA gyrase C-terminal domain, beta-propeller CDG60_06520 PF13533 Biotin-lipoyl like CDG60_06530 PF00266 Aminotransferase class-V CDG60_06540 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDG60_06555 PF02687 FtsX-like permease family CDG60_06555 PF12704 MacB-like periplasmic core domain CDG60_06560 PF00005 ABC transporter CDG60_06565 PF03772 Competence protein CDG60_06565 PF13567 Domain of unknown function (DUF4131) CDG60_06565 PF00753 Metallo-beta-lactamase superfamily CDG60_06575 PF06965 Na+/H+ antiporter 1 CDG60_06575 PF01343 Peptidase family S49 CDG60_06585 PF00551 Formyl transferase CDG60_06590 PF02769 AIR synthase related protein, C-terminal domain CDG60_06590 PF00586 AIR synthase related protein, N-terminal domain CDG60_06595 PF01594 AI-2E family transporter CDG60_06600 PF00308 Bacterial dnaA protein CDG60_06600 PF11638 DnaA N-terminal domain CDG60_06600 PF08299 Bacterial dnaA protein helix-turn-helix CDG60_06630 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDG60_06630 PF00588 SpoU rRNA Methylase family CDG60_06635 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDG60_06645 PF00691 OmpA family CDG60_06650 PF07676 WD40-like Beta Propeller Repeat CDG60_06650 PF04052 TolB amino-terminal domain CDG60_06660 PF02472 Biopolymer transport protein ExbD/TolR CDG60_06665 PF01618 MotA/TolQ/ExbB proton channel family CDG60_06670 PF03061 Thioesterase superfamily CDG60_06680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_06680 PF03466 LysR substrate binding domain CDG60_06685 PF00180 Isocitrate/isopropylmalate dehydrogenase CDG60_06690 PF02028 BCCT, betaine/carnitine/choline family transporter CDG60_06695 PF07859 alpha/beta hydrolase fold CDG60_06700 PF00355 Rieske [2Fe-2S] domain CDG60_06700 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDG60_06705 PF05491 RuvB C-terminal winged helix domain CDG60_06705 PF17864 RuvB AAA lid domain CDG60_06705 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDG60_06710 PF07499 RuvA, C-terminal domain CDG60_06710 PF01330 RuvA N terminal domain CDG60_06715 PF01966 HD domain CDG60_06720 PF00465 Iron-containing alcohol dehydrogenase CDG60_06725 PF00158 Sigma-54 interaction domain CDG60_06730 PF00171 Aldehyde dehydrogenase family CDG60_06735 PF00083 Sugar (and other) transporter CDG60_06740 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDG60_06740 PF02769 AIR synthase related protein, C-terminal domain CDG60_06740 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CDG60_06755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_06755 PF03466 LysR substrate binding domain CDG60_06760 PF01784 NIF3 (NGG1p interacting factor 3) CDG60_06770 PF00378 Enoyl-CoA hydratase/isomerase CDG60_06775 PF00293 NUDIX domain CDG60_06775 PF01467 Cytidylyltransferase-like CDG60_06790 PF03466 LysR substrate binding domain CDG60_06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_06800 PF00578 AhpC/TSA family CDG60_06810 PF06508 Queuosine biosynthesis protein QueC CDG60_06815 PF04055 Radical SAM superfamily CDG60_06820 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDG60_06820 PF14602 Hexapeptide repeat of succinyl-transferase CDG60_06820 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_06835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_06835 PF03466 LysR substrate binding domain CDG60_06840 PF00005 ABC transporter CDG60_06840 PF12857 TOBE-like domain CDG60_06845 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_06850 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_06865 PF01063 Amino-transferase class IV CDG60_06870 PF02618 YceG-like family CDG60_06875 PF02223 Thymidylate kinase CDG60_06885 PF12833 Helix-turn-helix domain CDG60_06885 PF12852 Cupin CDG60_06905 PF00890 FAD binding domain CDG60_06905 PF02910 Fumarate reductase flavoprotein C-term CDG60_06910 PF13180 PDZ domain CDG60_06920 PF06421 GTP-binding protein LepA C-terminus CDG60_06920 PF00679 Elongation factor G C-terminus CDG60_06920 PF00009 Elongation factor Tu GTP binding domain CDG60_06920 PF03144 Elongation factor Tu domain 2 CDG60_06925 PF10502 Signal peptidase, peptidase S26 CDG60_06935 PF00035 Double-stranded RNA binding motif CDG60_06935 PF14622 Ribonuclease-III-like CDG60_06940 PF07650 KH domain CDG60_06940 PF01926 50S ribosome-binding GTPase CDG60_06950 PF11967 Recombination protein O N terminal CDG60_06950 PF02565 Recombination protein O C terminal CDG60_06955 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDG60_06960 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CDG60_06975 PF12697 Alpha/beta hydrolase family CDG60_06995 PF00892 EamA-like transporter family CDG60_07010 PF00072 Response regulator receiver domain CDG60_07010 PF00990 Diguanylate cyclase, GGDEF domain CDG60_07020 PF04851 Type III restriction enzyme, res subunit CDG60_07020 PF00271 Helicase conserved C-terminal domain CDG60_07020 PF12344 Ultra-violet resistance protein B CDG60_07020 PF17757 UvrB interaction domain CDG60_07020 PF02151 UvrB/uvrC motif CDG60_07025 PF08212 Lipocalin-like domain CDG60_07030 PF00892 EamA-like transporter family CDG60_07040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDG60_07040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDG60_07055 PF01638 HxlR-like helix-turn-helix CDG60_07060 PF01926 50S ribosome-binding GTPase CDG60_07060 PF01018 GTP1/OBG CDG60_07065 PF01472 PUA domain CDG60_07065 PF00696 Amino acid kinase family CDG60_07075 PF01569 PAP2 superfamily CDG60_07085 PF00202 Aminotransferase class-III CDG60_07090 PF00282 Pyridoxal-dependent decarboxylase conserved domain CDG60_07105 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_07110 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_07115 PF00005 ABC transporter CDG60_07125 PF01343 Peptidase family S49 CDG60_07125 PF08496 Peptidase family S49 N-terminal CDG60_07145 PF08328 Adenylosuccinate lyase C-terminal CDG60_07145 PF00206 Lyase CDG60_07150 PF04356 Protein of unknown function (DUF489) CDG60_07160 PF00293 NUDIX domain CDG60_07165 PF00756 Putative esterase CDG60_07170 PF07930 D-aminopeptidase, domain B CDG60_07170 PF00144 Beta-lactamase CDG60_07180 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_07185 PF00768 D-alanyl-D-alanine carboxypeptidase CDG60_07185 PF07943 Penicillin-binding protein 5, C-terminal domain CDG60_07200 PF01975 Survival protein SurE CDG60_07205 PF01551 Peptidase family M23 CDG60_07205 PF01476 LysM domain CDG60_07210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_07210 PF03466 LysR substrate binding domain CDG60_07215 PF00202 Aminotransferase class-III CDG60_07220 PF00462 Glutaredoxin CDG60_07225 PF05362 Lon protease (S16) C-terminal proteolytic domain CDG60_07225 PF13654 AAA domain CDG60_07230 PF07690 Major Facilitator Superfamily CDG60_07235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDG60_07240 PF13593 SBF-like CPA transporter family (DUF4137) CDG60_07245 PF01197 Ribosomal protein L31 CDG60_07260 PF04055 Radical SAM superfamily CDG60_07265 PF09285 Elongation factor P, C-terminal CDG60_07265 PF08207 Elongation factor P (EF-P) KOW-like domain CDG60_07265 PF01132 Elongation factor P (EF-P) OB domain CDG60_07270 PF13722 5TM C-terminal transporter carbon starvation CstA CDG60_07270 PF02554 Carbon starvation protein CstA CDG60_07275 PF04328 Selenoprotein, putative CDG60_07280 PF07726 ATPase family associated with various cellular activities (AAA) CDG60_07280 PF17863 AAA lid domain CDG60_07290 PF01841 Transglutaminase-like superfamily CDG60_07290 PF13559 Domain of unknown function (DUF4129) CDG60_07290 PF11992 Domain of unknown function (DUF3488) CDG60_07305 PF01040 UbiA prenyltransferase family CDG60_07310 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CDG60_07315 PF00510 Cytochrome c oxidase subunit III CDG60_07320 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDG60_07325 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDG60_07325 PF06481 COX Aromatic Rich Motif CDG60_07335 PF00391 PEP-utilising enzyme, mobile domain CDG60_07335 PF02896 PEP-utilising enzyme, TIM barrel domain CDG60_07335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDG60_07340 PF03618 Kinase/pyrophosphorylase CDG60_07355 PF05360 yiaA/B two helix domain CDG60_07360 PF00296 Luciferase-like monooxygenase CDG60_07380 PF03462 PCRF domain CDG60_07380 PF00472 RF-1 domain CDG60_07385 PF13847 Methyltransferase domain CDG60_07385 PF17827 PrmC N-terminal domain CDG60_07400 PF00106 short chain dehydrogenase CDG60_07405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_07405 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_07405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_07410 PF00501 AMP-binding enzyme CDG60_07410 PF13193 AMP-binding enzyme C-terminal domain CDG60_07425 PF00899 ThiF family CDG60_07430 PF03109 ABC1 family CDG60_07450 PF03814 Potassium-transporting ATPase A subunit CDG60_07460 PF02669 K+-transporting ATPase, c chain CDG60_07465 PF02702 Osmosensitive K+ channel His kinase sensor domain CDG60_07465 PF13493 Domain of unknown function (DUF4118) CDG60_07465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_07465 PF00512 His Kinase A (phospho-acceptor) domain CDG60_07470 PF00486 Transcriptional regulatory protein, C terminal CDG60_07470 PF00072 Response regulator receiver domain CDG60_07475 PF03232 Ubiquinone biosynthesis protein COQ7 CDG60_07480 PF07690 Major Facilitator Superfamily CDG60_07485 PF01103 Surface antigen CDG60_07485 PF17243 POTRA domain TamA domain 1 CDG60_07485 PF07244 Surface antigen variable number repeat CDG60_07515 PF00484 Carbonic anhydrase CDG60_07570 PF00330 Aconitase family (aconitate hydratase) CDG60_07570 PF11791 Aconitate B N-terminal domain CDG60_07570 PF06434 Aconitate hydratase 2 N-terminus CDG60_07590 PF06039 Malate:quinone oxidoreductase (Mqo) CDG60_07595 PF01434 Peptidase family M41 CDG60_07595 PF17862 AAA+ lid domain CDG60_07595 PF00004 ATPase family associated with various cellular activities (AAA) CDG60_07605 PF01037 Lrp/AsnC ligand binding domain CDG60_07610 PF00324 Amino acid permease CDG60_07620 PF02110 Hydroxyethylthiazole kinase family CDG60_07635 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CDG60_07635 PF01433 Peptidase family M1 domain CDG60_07635 PF11940 Domain of unknown function (DUF3458) Ig-like fold CDG60_07645 PF00582 Universal stress protein family CDG60_07650 PF00582 Universal stress protein family CDG60_07655 PF00893 Small Multidrug Resistance protein CDG60_07665 PF03594 Benzoate membrane transport protein CDG60_07670 PF01810 LysE type translocator CDG60_07675 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDG60_07680 PF03466 LysR substrate binding domain CDG60_07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_07690 PF00732 GMC oxidoreductase CDG60_07690 PF05199 GMC oxidoreductase CDG60_07695 PF00171 Aldehyde dehydrogenase family CDG60_07700 PF02390 Putative methyltransferase CDG60_07705 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDG60_07705 PF07730 Histidine kinase CDG60_07705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_07705 PF00672 HAMP domain CDG60_07710 PF01740 STAS domain CDG60_07710 PF00916 Sulfate permease family CDG60_07715 PF00043 Glutathione S-transferase, C-terminal domain CDG60_07715 PF02798 Glutathione S-transferase, N-terminal domain CDG60_07720 PF05690 Thiazole biosynthesis protein ThiG CDG60_07730 PF04241 Protein of unknown function (DUF423) CDG60_07735 PF04545 Sigma-70, region 4 CDG60_07735 PF04542 Sigma-70 region 2 CDG60_07735 PF00140 Sigma-70 factor, region 1.2 CDG60_07745 PF00313 'Cold-shock' DNA-binding domain CDG60_07750 PF00270 DEAD/DEAH box helicase CDG60_07750 PF00271 Helicase conserved C-terminal domain CDG60_07760 PF00881 Nitroreductase family CDG60_07765 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDG60_07765 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDG60_07785 PF01180 Dihydroorotate dehydrogenase CDG60_07795 PF00156 Phosphoribosyl transferase domain CDG60_07810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG60_07810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG60_07815 PF01435 Peptidase family M48 CDG60_07830 PF09424 Yqey-like protein CDG60_07835 PF01165 Ribosomal protein S21 CDG60_07840 PF00814 Glycoprotease family CDG60_07845 PF00677 Lumazine binding domain CDG60_07900 PF01645 Conserved region in glutamate synthase CDG60_07905 PF00072 Response regulator receiver domain CDG60_07905 PF00196 Bacterial regulatory proteins, luxR family CDG60_07910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_07910 PF07730 Histidine kinase CDG60_07915 PF08007 Cupin superfamily protein CDG60_07925 PF02545 Maf-like protein CDG60_07935 PF00162 Phosphoglycerate kinase CDG60_07945 PF01116 Fructose-bisphosphate aldolase class-II CDG60_07965 PF00149 Calcineurin-like phosphoesterase CDG60_07970 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDG60_07975 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CDG60_07975 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG60_07980 PF06865 Pyrimidine/purine nucleoside phosphorylase CDG60_07985 PF03466 LysR substrate binding domain CDG60_07985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_07990 PF00248 Aldo/keto reductase family CDG60_08020 PF05958 tRNA (Uracil-5-)-methyltransferase CDG60_08025 PF14850 DNA-binding domain of Proline dehydrogenase CDG60_08025 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDG60_08025 PF01619 Proline dehydrogenase CDG60_08025 PF00171 Aldehyde dehydrogenase family CDG60_08030 PF01037 Lrp/AsnC ligand binding domain CDG60_08035 PF00474 Sodium:solute symporter family CDG60_08040 PF00206 Lyase CDG60_08040 PF10415 Fumarase C C-terminus CDG60_08050 PF02146 Sir2 family CDG60_08055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_08055 PF03466 LysR substrate binding domain CDG60_08060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_08060 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_08060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_08065 PF02515 CoA-transferase family III CDG60_08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_08070 PF03466 LysR substrate binding domain CDG60_08085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG60_08085 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_08100 PF07690 Major Facilitator Superfamily CDG60_08105 PF00248 Aldo/keto reductase family CDG60_08110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_08110 PF03466 LysR substrate binding domain CDG60_08120 PF06418 CTP synthase N-terminus CDG60_08120 PF00117 Glutamine amidotransferase class-I CDG60_08125 PF00793 DAHP synthetase I family CDG60_08130 PF00113 Enolase, C-terminal TIM barrel domain CDG60_08130 PF03952 Enolase, N-terminal domain CDG60_08135 PF04977 Septum formation initiator CDG60_08140 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDG60_08145 PF01098 Cell cycle protein CDG60_08150 PF01266 FAD dependent oxidoreductase CDG60_08165 PF02542 YgbB family CDG60_08175 PF00793 DAHP synthetase I family CDG60_08180 PF01925 Sulfite exporter TauE/SafE CDG60_08185 PF02684 Lipid-A-disaccharide synthetase CDG60_08190 PF12833 Helix-turn-helix domain CDG60_08190 PF12852 Cupin CDG60_08195 PF00487 Fatty acid desaturase CDG60_08200 PF13460 NAD(P)H-binding CDG60_08205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_08205 PF03466 LysR substrate binding domain CDG60_08210 PF00583 Acetyltransferase (GNAT) family CDG60_08215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_08215 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_08215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_08225 PF03109 ABC1 family CDG60_08245 PF05175 Methyltransferase small domain CDG60_08250 PF01264 Chorismate synthase CDG60_08275 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDG60_08280 PF03956 Lysine exporter LysO CDG60_08285 PF00743 Flavin-binding monooxygenase-like CDG60_08290 PF12833 Helix-turn-helix domain CDG60_08290 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG60_08295 PF03969 AFG1-like ATPase CDG60_08305 PF01274 Malate synthase CDG60_08315 PF03741 Integral membrane protein TerC family CDG60_08315 PF03471 Transporter associated domain CDG60_08330 PF08173 Membrane bound YbgT-like protein CDG60_08335 PF02322 Cytochrome bd terminal oxidase subunit II CDG60_08340 PF01654 Cytochrome bd terminal oxidase subunit I CDG60_08350 PF07290 Protein of unknown function (DUF1449) CDG60_08360 PF00294 pfkB family carbohydrate kinase CDG60_08365 PF13673 Acetyltransferase (GNAT) domain CDG60_08370 PF00293 NUDIX domain CDG60_08385 PF05193 Peptidase M16 inactive domain CDG60_08385 PF08367 Peptidase M16C associated CDG60_08385 PF00675 Insulinase (Peptidase family M16) CDG60_08390 PF02253 Phospholipase A1 CDG60_08395 PF02386 Cation transport protein CDG60_08400 PF02080 TrkA-C domain CDG60_08400 PF02254 TrkA-N domain CDG60_08415 PF00291 Pyridoxal-phosphate dependent enzyme CDG60_08415 PF00585 C-terminal regulatory domain of Threonine dehydratase CDG60_08420 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDG60_08430 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG60_08430 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDG60_08440 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDG60_08445 PF02861 Clp amino terminal domain, pathogenicity island component CDG60_08445 PF07724 AAA domain (Cdc48 subfamily) CDG60_08445 PF10431 C-terminal, D2-small domain, of ClpB protein CDG60_08445 PF17871 AAA lid domain CDG60_08445 PF00004 ATPase family associated with various cellular activities (AAA) CDG60_08450 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CDG60_08465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDG60_08465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDG60_08490 PF00285 Citrate synthase, C-terminal domain CDG60_08495 PF01638 HxlR-like helix-turn-helix CDG60_08515 PF02635 DsrE/DsrF-like family CDG60_08520 PF00589 Phage integrase family CDG60_08545 PF01381 Helix-turn-helix CDG60_08600 PF00665 Integrase core domain CDG60_08600 PF13936 Helix-turn-helix domain CDG60_08610 PF00313 'Cold-shock' DNA-binding domain CDG60_08660 PF03354 Phage Terminase CDG60_08665 PF04860 Phage portal protein CDG60_08800 PF13438 Domain of unknown function (DUF4113) CDG60_08800 PF00817 impB/mucB/samB family CDG60_08800 PF11799 impB/mucB/samB family C-terminal domain CDG60_08805 PF00717 Peptidase S24-like CDG60_08820 PF04239 Protein of unknown function (DUF421) CDG60_08835 PF00589 Phage integrase family CDG60_08835 PF14659 Phage integrase, N-terminal SAM-like domain CDG60_08835 PF13356 Arm DNA-binding domain CDG60_08840 PF04073 Aminoacyl-tRNA editing domain CDG60_08860 PF12832 MFS_1 like family CDG60_08865 PF01425 Amidase CDG60_08870 PF00990 Diguanylate cyclase, GGDEF domain CDG60_08880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG60_08880 PF00289 Biotin carboxylase, N-terminal domain CDG60_08880 PF02785 Biotin carboxylase C-terminal domain CDG60_08885 PF00364 Biotin-requiring enzyme CDG60_08890 PF01220 Dehydroquinase class II CDG60_08900 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDG60_08905 PF02277 Phosphoribosyltransferase CDG60_08915 PF02654 Cobalamin-5-phosphate synthase CDG60_08920 PF04172 LrgB-like family CDG60_08925 PF03788 LrgA family CDG60_08930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_08930 PF03466 LysR substrate binding domain CDG60_08945 PF07729 FCD domain CDG60_08945 PF00392 Bacterial regulatory proteins, gntR family CDG60_08955 PF08402 TOBE domain CDG60_08955 PF00005 ABC transporter CDG60_08960 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_08965 PF01266 FAD dependent oxidoreductase CDG60_08970 PF00266 Aminotransferase class-V CDG60_08975 PF13419 Haloacid dehalogenase-like hydrolase CDG60_08985 PF13098 Thioredoxin-like domain CDG60_08990 PF00578 AhpC/TSA family CDG60_08995 PF11412 Disulphide bond corrector protein DsbC CDG60_08995 PF02683 Cytochrome C biogenesis protein transmembrane region CDG60_09000 PF00072 Response regulator receiver domain CDG60_09000 PF00486 Transcriptional regulatory protein, C terminal CDG60_09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_09005 PF00512 His Kinase A (phospho-acceptor) domain CDG60_09010 PF04143 Sulphur transport CDG60_09020 PF00753 Metallo-beta-lactamase superfamily CDG60_09030 PF00593 TonB dependent receptor CDG60_09030 PF07715 TonB-dependent Receptor Plug Domain CDG60_09040 PF12697 Alpha/beta hydrolase family CDG60_09045 PF07715 TonB-dependent Receptor Plug Domain CDG60_09045 PF00593 TonB dependent receptor CDG60_09125 PF13361 UvrD-like helicase C-terminal domain CDG60_09125 PF00580 UvrD/REP helicase N-terminal domain CDG60_09130 PF02463 RecF/RecN/SMC N terminal domain CDG60_09160 PF00296 Luciferase-like monooxygenase CDG60_09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_09165 PF03466 LysR substrate binding domain CDG60_09175 PF03358 NADPH-dependent FMN reductase CDG60_09180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG60_09200 PF17954 Quercetinase C-terminal cupin domain CDG60_09200 PF02678 Pirin CDG60_09210 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CDG60_09210 PF18381 YcaO cyclodehydratase C-terminal domain CDG60_09235 PF00106 short chain dehydrogenase CDG60_09240 PF00892 EamA-like transporter family CDG60_09250 PF03466 LysR substrate binding domain CDG60_09250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_09255 PF00291 Pyridoxal-phosphate dependent enzyme CDG60_09260 PF01553 Acyltransferase CDG60_09270 PF00916 Sulfate permease family CDG60_09270 PF01740 STAS domain CDG60_09275 PF00375 Sodium:dicarboxylate symporter family CDG60_09285 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CDG60_09290 PF00924 Mechanosensitive ion channel CDG60_09295 PF00664 ABC transporter transmembrane region CDG60_09295 PF00005 ABC transporter CDG60_09300 PF01575 MaoC like domain CDG60_09305 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG60_09305 PF12833 Helix-turn-helix domain CDG60_09310 PF01597 Glycine cleavage H-protein CDG60_09320 PF07690 Major Facilitator Superfamily CDG60_09330 PF00793 DAHP synthetase I family CDG60_09335 PF00155 Aminotransferase class I and II CDG60_09340 PF12848 ABC transporter CDG60_09340 PF00005 ABC transporter CDG60_09345 PF08240 Alcohol dehydrogenase GroES-like domain CDG60_09345 PF00107 Zinc-binding dehydrogenase CDG60_09350 PF13091 PLD-like domain CDG60_09365 PF00392 Bacterial regulatory proteins, gntR family CDG60_09365 PF00155 Aminotransferase class I and II CDG60_09370 PF00892 EamA-like transporter family CDG60_09425 PF00106 short chain dehydrogenase CDG60_09440 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_09440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_09440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_09445 PF03466 LysR substrate binding domain CDG60_09445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_09455 PF00392 Bacterial regulatory proteins, gntR family CDG60_09455 PF00155 Aminotransferase class I and II CDG60_09470 PF02322 Cytochrome bd terminal oxidase subunit II CDG60_09475 PF01654 Cytochrome bd terminal oxidase subunit I CDG60_09495 PF07690 Major Facilitator Superfamily CDG60_09515 PF00206 Lyase CDG60_09515 PF10415 Fumarase C C-terminus CDG60_09520 PF16363 GDP-mannose 4,6 dehydratase CDG60_09560 PF02677 Epoxyqueuosine reductase QueH CDG60_09585 PF01638 HxlR-like helix-turn-helix CDG60_09785 PF02954 Bacterial regulatory protein, Fis family CDG60_09820 PF00717 Peptidase S24-like CDG60_09820 PF01381 Helix-turn-helix CDG60_09865 PF04073 Aminoacyl-tRNA editing domain CDG60_09905 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CDG60_09915 PF00448 SRP54-type protein, GTPase domain CDG60_09915 PF02881 SRP54-type protein, helical bundle domain CDG60_09920 PF05193 Peptidase M16 inactive domain CDG60_09920 PF00675 Insulinase (Peptidase family M16) CDG60_09950 PF00571 CBS domain CDG60_09950 PF00478 IMP dehydrogenase / GMP reductase domain CDG60_09955 PF00291 Pyridoxal-phosphate dependent enzyme CDG60_09970 PF17862 AAA+ lid domain CDG60_09970 PF00004 ATPase family associated with various cellular activities (AAA) CDG60_09970 PF01434 Peptidase family M41 CDG60_09980 PF05166 YcgL domain CDG60_09985 PF01612 3'-5' exonuclease CDG60_09985 PF00570 HRDC domain CDG60_09990 PF02132 RecR protein CDG60_09990 PF13662 Toprim domain CDG60_09995 PF02575 YbaB/EbfC DNA-binding family CDG60_10000 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG60_10010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDG60_10010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDG60_10020 PF01230 HIT domain CDG60_10030 PF06078 Bacterial protein of unknown function (DUF937) CDG60_10045 PF00639 PPIC-type PPIASE domain CDG60_10045 PF09312 SurA N-terminal domain CDG60_10050 PF00216 Bacterial DNA-binding protein CDG60_10065 PF02082 Transcriptional regulator CDG60_10070 PF00266 Aminotransferase class-V CDG60_10075 PF01592 NifU-like N terminal domain CDG60_10080 PF01521 Iron-sulphur cluster biosynthesis CDG60_10085 PF00226 DnaJ domain CDG60_10085 PF07743 HSCB C-terminal oligomerisation domain CDG60_10090 PF00012 Hsp70 protein CDG60_10095 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG60_10100 PF00211 Adenylate and Guanylate cyclase catalytic domain CDG60_10110 PF03461 TRCF domain CDG60_10110 PF02559 CarD-like/TRCF domain CDG60_10110 PF00270 DEAD/DEAH box helicase CDG60_10110 PF17757 UvrB interaction domain CDG60_10110 PF00271 Helicase conserved C-terminal domain CDG60_10125 PF03737 Aldolase/RraA CDG60_10130 PF13460 NAD(P)H-binding CDG60_10135 PF01649 Ribosomal protein S20 CDG60_10145 PF12561 ToxR activated gene A lipoprotein domain CDG60_10145 PF00041 Fibronectin type III domain CDG60_10155 PF00459 Inositol monophosphatase family CDG60_10160 PF13419 Haloacid dehalogenase-like hydrolase CDG60_10165 PF01479 S4 domain CDG60_10170 PF00154 recA bacterial DNA recombination protein CDG60_10175 PF02631 RecX family CDG60_10190 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDG60_10190 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_10195 PF07977 FabA-like domain CDG60_10200 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_10200 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDG60_10210 PF07244 Surface antigen variable number repeat CDG60_10210 PF01103 Surface antigen CDG60_10215 PF13180 PDZ domain CDG60_10215 PF17820 PDZ domain CDG60_10215 PF02163 Peptidase family M50 CDG60_10220 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CDG60_10220 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDG60_10220 PF13288 DXP reductoisomerase C-terminal domain CDG60_10230 PF01255 Putative undecaprenyl diphosphate synthase CDG60_10235 PF01765 Ribosome recycling factor CDG60_10240 PF00696 Amino acid kinase family CDG60_10245 PF18693 TRAM domain CDG60_10245 PF04055 Radical SAM superfamily CDG60_10245 PF00919 Uncharacterized protein family UPF0004 CDG60_10250 PF00989 PAS fold CDG60_10250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_10250 PF00512 His Kinase A (phospho-acceptor) domain CDG60_10255 PF00072 Response regulator receiver domain CDG60_10255 PF02954 Bacterial regulatory protein, Fis family CDG60_10255 PF00158 Sigma-54 interaction domain CDG60_10265 PF03466 LysR substrate binding domain CDG60_10265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_10270 PF00557 Metallopeptidase family M24 CDG60_10275 PF05525 Branched-chain amino acid transport protein CDG60_10285 PF00216 Bacterial DNA-binding protein CDG60_10290 PF00575 S1 RNA binding domain CDG60_10295 PF02224 Cytidylate kinase CDG60_10305 PF14437 MafB19-like deaminase CDG60_10315 PF03167 Uracil DNA glycosylase superfamily CDG60_10325 PF03934 Type II secretion system (T2SS), protein K CDG60_10330 PF07963 Prokaryotic N-terminal methylation motif CDG60_10330 PF11612 Type II secretion system (T2SS), protein J CDG60_10335 PF02501 Type II secretion system (T2SS), protein I CDG60_10335 PF07963 Prokaryotic N-terminal methylation motif CDG60_10340 PF12019 Type II transport protein GspH CDG60_10340 PF07963 Prokaryotic N-terminal methylation motif CDG60_10350 PF01026 TatD related DNase CDG60_10360 PF09115 DNA polymerase III, delta subunit, C terminal CDG60_10365 PF02348 Cytidylyltransferase CDG60_10370 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDG60_10375 PF00664 ABC transporter transmembrane region CDG60_10375 PF00005 ABC transporter CDG60_10385 PF01618 MotA/TolQ/ExbB proton channel family CDG60_10390 PF17762 HTH domain found in ParB protein CDG60_10390 PF02195 ParB-like nuclease domain CDG60_10395 PF13614 AAA domain CDG60_10400 PF02527 rRNA small subunit methyltransferase G CDG60_10405 PF00483 Nucleotidyl transferase CDG60_10410 PF01636 Phosphotransferase enzyme family CDG60_10415 PF04453 LPS transport system D CDG60_10415 PF03968 OstA-like protein CDG60_10420 PF00639 PPIC-type PPIASE domain CDG60_10420 PF09312 SurA N-terminal domain CDG60_10425 PF17209 Hfq protein CDG60_10435 PF08676 MutL C terminal dimerisation domain CDG60_10435 PF01119 DNA mismatch repair protein, C-terminal domain CDG60_10440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDG60_10445 PF01479 S4 domain CDG60_10445 PF00849 RNA pseudouridylate synthase CDG60_10460 PF01479 S4 domain CDG60_10460 PF00849 RNA pseudouridylate synthase CDG60_10465 PF04284 Protein of unknown function (DUF441) CDG60_10475 PF00990 Diguanylate cyclase, GGDEF domain CDG60_10475 PF03707 Bacterial signalling protein N terminal repeat CDG60_10475 PF00563 EAL domain CDG60_10490 PF03466 LysR substrate binding domain CDG60_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_10495 PF03616 Sodium/glutamate symporter CDG60_10500 PF07690 Major Facilitator Superfamily CDG60_10505 PF00027 Cyclic nucleotide-binding domain CDG60_10505 PF00520 Ion transport protein CDG60_10510 PF14493 Helix-turn-helix domain CDG60_10510 PF05970 PIF1-like helicase CDG60_10520 PF00465 Iron-containing alcohol dehydrogenase CDG60_10525 PF00106 short chain dehydrogenase CDG60_10530 PF00106 short chain dehydrogenase CDG60_10545 PF00171 Aldehyde dehydrogenase family CDG60_10550 PF03466 LysR substrate binding domain CDG60_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_10560 PF01323 DSBA-like thioredoxin domain CDG60_10565 PF00106 short chain dehydrogenase CDG60_10570 PF00440 Bacterial regulatory proteins, tetR family CDG60_10575 PF00958 GMP synthase C terminal domain CDG60_10575 PF00117 Glutamine amidotransferase class-I CDG60_10575 PF02540 NAD synthase CDG60_10580 PF04264 YceI-like domain CDG60_10600 PF02780 Transketolase, C-terminal domain CDG60_10600 PF02779 Transketolase, pyrimidine binding domain CDG60_10600 PF00456 Transketolase, thiamine diphosphate binding domain CDG60_10605 PF00990 Diguanylate cyclase, GGDEF domain CDG60_10610 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDG60_10610 PF02772 S-adenosylmethionine synthetase, central domain CDG60_10610 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDG60_10625 PF01810 LysE type translocator CDG60_10640 PF02075 Crossover junction endodeoxyribonuclease RuvC CDG60_10655 PF00708 Acylphosphatase CDG60_10660 PF03853 YjeF-related protein N-terminus CDG60_10660 PF01256 Carbohydrate kinase CDG60_10665 PF08331 Domain of unknown function (DUF1730) CDG60_10670 PF04055 Radical SAM superfamily CDG60_10670 PF06968 Biotin and Thiamin Synthesis associated domain CDG60_10685 PF13193 AMP-binding enzyme C-terminal domain CDG60_10685 PF00501 AMP-binding enzyme CDG60_10700 PF00313 'Cold-shock' DNA-binding domain CDG60_10710 PF01553 Acyltransferase CDG60_10715 PF01709 Transcriptional regulator CDG60_10730 PF01926 50S ribosome-binding GTPase CDG60_10730 PF06071 Protein of unknown function (DUF933) CDG60_10740 PF13545 Crp-like helix-turn-helix domain CDG60_10740 PF00027 Cyclic nucleotide-binding domain CDG60_10750 PF03591 AzlC protein CDG60_10760 PF02222 ATP-grasp domain CDG60_10765 PF08335 GlnD PII-uridylyltransferase CDG60_10765 PF01966 HD domain CDG60_10765 PF01909 Nucleotidyltransferase domain CDG60_10770 PF00155 Aminotransferase class I and II CDG60_10780 PF00255 Glutathione peroxidase CDG60_10785 PF01641 SelR domain CDG60_10790 PF00155 Aminotransferase class I and II CDG60_10795 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDG60_10795 PF00753 Metallo-beta-lactamase superfamily CDG60_10810 PF01565 FAD binding domain CDG60_10810 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDG60_10815 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDG60_10820 PF00465 Iron-containing alcohol dehydrogenase CDG60_10825 PF03061 Thioesterase superfamily CDG60_10830 PF05506 Domain of unknown function (DUF756) CDG60_10830 PF04185 Phosphoesterase family CDG60_10835 PF12169 DNA polymerase III subunits gamma and tau domain III CDG60_10835 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CDG60_10835 PF12170 DNA polymerase III tau subunit V interacting with alpha CDG60_10855 PF00108 Thiolase, N-terminal domain CDG60_10855 PF02803 Thiolase, C-terminal domain CDG60_10880 PF00691 OmpA family CDG60_10880 PF18393 MotY N-terminal domain CDG60_10885 PF01979 Amidohydrolase family CDG60_10890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDG60_10890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDG60_10905 PF01170 Putative RNA methylase family UPF0020 CDG60_10905 PF02926 THUMP domain CDG60_10905 PF10672 S-adenosylmethionine-dependent methyltransferase CDG60_10920 PF07724 AAA domain (Cdc48 subfamily) CDG60_10920 PF10431 C-terminal, D2-small domain, of ClpB protein CDG60_10920 PF02861 Clp amino terminal domain, pathogenicity island component CDG60_10920 PF00004 ATPase family associated with various cellular activities (AAA) CDG60_10920 PF17871 AAA lid domain CDG60_10925 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_10940 PF00266 Aminotransferase class-V CDG60_10945 PF02566 OsmC-like protein CDG60_10955 PF13545 Crp-like helix-turn-helix domain CDG60_10955 PF00027 Cyclic nucleotide-binding domain CDG60_10960 PF00248 Aldo/keto reductase family CDG60_10975 PF01435 Peptidase family M48 CDG60_10980 PF00709 Adenylosuccinate synthetase CDG60_10985 PF13393 Histidyl-tRNA synthetase CDG60_10990 PF01037 Lrp/AsnC ligand binding domain CDG60_11010 PF02470 MlaD protein CDG60_11015 PF04403 Paraquat-inducible protein A CDG60_11020 PF04403 Paraquat-inducible protein A CDG60_11030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDG60_11030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDG60_11045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDG60_11045 PF02272 DHHA1 domain CDG60_11045 PF01411 tRNA synthetases class II (A) CDG60_11050 PF01842 ACT domain CDG60_11050 PF00696 Amino acid kinase family CDG60_11050 PF13840 ACT domain CDG60_11055 PF02599 Global regulator protein family CDG60_11060 PF01351 Ribonuclease HII CDG60_11070 PF01292 Prokaryotic cytochrome b561 CDG60_11080 PF00962 Adenosine/AMP deaminase CDG60_11085 PF00860 Permease family CDG60_11095 PF01250 Ribosomal protein S6 CDG60_11100 PF01084 Ribosomal protein S18 CDG60_11105 PF03948 Ribosomal protein L9, C-terminal domain CDG60_11105 PF01281 Ribosomal protein L9, N-terminal domain CDG60_11110 PF03796 DnaB-like helicase C terminal domain CDG60_11110 PF00772 DnaB-like helicase N terminal domain CDG60_11130 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG60_11130 PF12833 Helix-turn-helix domain CDG60_11135 PF01168 Alanine racemase, N-terminal domain CDG60_11135 PF00842 Alanine racemase, C-terminal domain CDG60_11145 PF01841 Transglutaminase-like superfamily CDG60_11145 PF08379 Bacterial transglutaminase-like N-terminal region CDG60_11155 PF14403 Circularly permuted ATP-grasp type 2 CDG60_11165 PF07690 Major Facilitator Superfamily CDG60_11175 PF01134 Glucose inhibited division protein A CDG60_11175 PF13932 GidA associated domain CDG60_11205 PF02954 Bacterial regulatory protein, Fis family CDG60_11210 PF02142 MGS-like domain CDG60_11210 PF01808 AICARFT/IMPCHase bienzyme CDG60_11215 PF02843 Phosphoribosylglycinamide synthetase, C domain CDG60_11215 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDG60_11215 PF02844 Phosphoribosylglycinamide synthetase, N domain CDG60_11225 PF13302 Acetyltransferase (GNAT) domain CDG60_11235 PF03180 NLPA lipoprotein CDG60_11240 PF09383 NIL domain CDG60_11240 PF00005 ABC transporter CDG60_11245 PF00528 Binding-protein-dependent transport system inner membrane component CDG60_11250 PF14579 Helix-hairpin-helix motif CDG60_11250 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDG60_11250 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDG60_11250 PF01336 OB-fold nucleic acid binding domain CDG60_11250 PF02811 PHP domain CDG60_11255 PF00588 SpoU rRNA Methylase family CDG60_11260 PF00132 Bacterial transferase hexapeptide (six repeats) CDG60_11285 PF00990 Diguanylate cyclase, GGDEF domain CDG60_11300 PF00355 Rieske [2Fe-2S] domain CDG60_11300 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDG60_11305 PF00866 Ring hydroxylating beta subunit CDG60_11310 PF00175 Oxidoreductase NAD-binding domain CDG60_11310 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG60_11310 PF00970 Oxidoreductase FAD-binding domain CDG60_11320 PF12833 Helix-turn-helix domain CDG60_11320 PF14525 AraC-binding-like domain CDG60_11330 PF01613 Flavin reductase like domain CDG60_11345 PF01738 Dienelactone hydrolase family CDG60_11350 PF05192 MutS domain III CDG60_11350 PF05190 MutS family domain IV CDG60_11350 PF00488 MutS domain V CDG60_11350 PF05188 MutS domain II CDG60_11350 PF01624 MutS domain I CDG60_11355 PF00037 4Fe-4S binding domain CDG60_11355 PF11953 Domain of unknown function (DUF3470) CDG60_11365 PF01596 O-methyltransferase CDG60_11380 PF01205 Uncharacterized protein family UPF0029 CDG60_11385 PF13533 Biotin-lipoyl like CDG60_11390 PF00664 ABC transporter transmembrane region CDG60_11390 PF00005 ABC transporter CDG60_11400 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDG60_11400 PF00005 ABC transporter CDG60_11405 PF03968 OstA-like protein CDG60_11420 PF01380 SIS domain CDG60_11420 PF00571 CBS domain CDG60_11435 PF09190 DALR domain CDG60_11435 PF01406 tRNA synthetases class I (C) catalytic domain CDG60_11445 PF09618 CRISPR-associated protein (Cas_Csy4) CDG60_11450 PF09615 CRISPR-associated protein (Cas_Csy3) CDG60_11460 PF09611 CRISPR-associated protein (Cas_Csy1) CDG60_11470 PF01867 CRISPR associated protein Cas1 CDG60_11475 PF00175 Oxidoreductase NAD-binding domain CDG60_11475 PF00667 FAD binding domain CDG60_11475 PF00258 Flavodoxin CDG60_11495 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDG60_11495 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDG60_11500 PF02803 Thiolase, C-terminal domain CDG60_11500 PF00108 Thiolase, N-terminal domain CDG60_11505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_11505 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG60_11505 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_11505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_11510 PF00440 Bacterial regulatory proteins, tetR family CDG60_11510 PF08360 QacR-like protein, C-terminal region CDG60_11535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDG60_11535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDG60_11540 PF00270 DEAD/DEAH box helicase CDG60_11540 PF11898 Domain of unknown function (DUF3418) CDG60_11540 PF04408 Helicase associated domain (HA2) CDG60_11540 PF00271 Helicase conserved C-terminal domain CDG60_11540 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CDG60_11545 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDG60_11545 PF00578 AhpC/TSA family CDG60_11560 PF01596 O-methyltransferase CDG60_11600 PF04143 Sulphur transport CDG60_11605 PF03060 Nitronate monooxygenase CDG60_11615 PF01207 Dihydrouridine synthase (Dus) CDG60_11620 PF07759 Protein of unknown function (DUF1615) CDG60_11630 PF00487 Fatty acid desaturase CDG60_11635 PF00970 Oxidoreductase FAD-binding domain CDG60_11635 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG60_11635 PF00175 Oxidoreductase NAD-binding domain CDG60_11640 PF00440 Bacterial regulatory proteins, tetR family CDG60_11650 PF00176 SNF2 family N-terminal domain CDG60_11650 PF12137 RNA polymerase recycling family C-terminal CDG60_11650 PF18339 RapA N-terminal Tudor like domain 1 CDG60_11650 PF18337 RapA N-terminal Tudor like domain CDG60_11650 PF00271 Helicase conserved C-terminal domain CDG60_11655 PF00849 RNA pseudouridylate synthase CDG60_11670 PF00202 Aminotransferase class-III CDG60_11675 PF02581 Thiamine monophosphate synthase CDG60_11730 PF00717 Peptidase S24-like CDG60_11735 PF11798 IMS family HHH motif CDG60_11735 PF11799 impB/mucB/samB family C-terminal domain CDG60_11735 PF00817 impB/mucB/samB family CDG60_11735 PF13438 Domain of unknown function (DUF4113) CDG60_11745 PF05193 Peptidase M16 inactive domain CDG60_11745 PF00675 Insulinase (Peptidase family M16) CDG60_11755 PF02567 Phenazine biosynthesis-like protein CDG60_11765 PF01613 Flavin reductase like domain CDG60_11780 PF00180 Isocitrate/isopropylmalate dehydrogenase CDG60_11785 PF00849 RNA pseudouridylate synthase CDG60_11790 PF01925 Sulfite exporter TauE/SafE CDG60_11795 PF01613 Flavin reductase like domain CDG60_11800 PF01717 Cobalamin-independent synthase, Catalytic domain CDG60_11800 PF08267 Cobalamin-independent synthase, N-terminal domain CDG60_11810 PF03971 Monomeric isocitrate dehydrogenase CDG60_11820 PF07943 Penicillin-binding protein 5, C-terminal domain CDG60_11820 PF00768 D-alanyl-D-alanine carboxypeptidase CDG60_11825 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_11830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG60_11840 PF00875 DNA photolyase CDG60_11840 PF03441 FAD binding domain of DNA photolyase CDG60_11855 PF03883 Peroxide stress protein YaaA CDG60_11865 PF00375 Sodium:dicarboxylate symporter family CDG60_11870 PF00158 Sigma-54 interaction domain CDG60_11870 PF06956 Regulator of RNA terminal phosphate cyclase CDG60_11875 PF01139 tRNA-splicing ligase RtcB CDG60_11890 PF01137 RNA 3'-terminal phosphate cyclase CDG60_11890 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain CDG60_11905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDG60_11910 PF00800 Prephenate dehydratase CDG60_11910 PF01817 Chorismate mutase type II CDG60_11910 PF01842 ACT domain CDG60_11915 PF01965 DJ-1/PfpI family CDG60_11920 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_11920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_11920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_11925 PF00375 Sodium:dicarboxylate symporter family CDG60_11930 PF02885 Glycosyl transferase family, helical bundle domain CDG60_11930 PF00591 Glycosyl transferase family, a/b domain CDG60_11935 PF07023 Protein of unknown function (DUF1315) CDG60_11940 PF01513 ATP-NAD kinase CDG60_11945 PF00912 Transglycosylase CDG60_11945 PF00905 Penicillin binding protein transpeptidase domain CDG60_11945 PF14814 Bifunctional transglycosylase second domain CDG60_11955 PF02581 Thiamine monophosphate synthase CDG60_11965 PF08521 Two-component sensor kinase N-terminal CDG60_11965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_11965 PF00512 His Kinase A (phospho-acceptor) domain CDG60_11970 PF00072 Response regulator receiver domain CDG60_11970 PF00486 Transcriptional regulatory protein, C terminal CDG60_11980 PF00437 Type II/IV secretion system protein CDG60_12000 PF01980 tRNA-methyltransferase O CDG60_12000 PF18389 TrmO C-terminal domain CDG60_12005 PF00175 Oxidoreductase NAD-binding domain CDG60_12005 PF00970 Oxidoreductase FAD-binding domain CDG60_12015 PF01011 PQQ enzyme repeat CDG60_12015 PF13360 PQQ-like domain CDG60_12035 PF13411 MerR HTH family regulatory protein CDG60_12040 PF01758 Sodium Bile acid symporter family CDG60_12050 PF01022 Bacterial regulatory protein, arsR family CDG60_12060 PF00037 4Fe-4S binding domain CDG60_12070 PF03466 LysR substrate binding domain CDG60_12070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_12075 PF02525 Flavodoxin-like fold CDG60_12080 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_12080 PF13192 Thioredoxin domain CDG60_12095 PF05816 Toxic anion resistance protein (TelA) CDG60_12110 PF14760 Rnk N-terminus CDG60_12110 PF01272 Transcription elongation factor, GreA/GreB, C-term CDG60_12120 PF00464 Serine hydroxymethyltransferase CDG60_12360 PF00717 Peptidase S24-like CDG60_12360 PF01381 Helix-turn-helix CDG60_12405 PF13356 Arm DNA-binding domain CDG60_12405 PF00589 Phage integrase family CDG60_12415 PF00005 ABC transporter CDG60_12420 PF01061 ABC-2 type transporter CDG60_12425 PF14489 QueF-like protein CDG60_12425 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CDG60_12435 PF13406 Transglycosylase SLT domain CDG60_12440 PF05036 Sporulation related domain CDG60_12440 PF03330 Lytic transglycolase CDG60_12445 PF07969 Amidohydrolase family CDG60_12480 PF00889 Elongation factor TS CDG60_12485 PF00318 Ribosomal protein S2 CDG60_12490 PF00557 Metallopeptidase family M24 CDG60_12515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_12515 PF03466 LysR substrate binding domain CDG60_12520 PF02678 Pirin CDG60_12520 PF05726 Pirin C-terminal cupin domain CDG60_12540 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_12540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG60_12545 PF04055 Radical SAM superfamily CDG60_12560 PF00152 tRNA synthetases class II (D, K and N) CDG60_12565 PF11890 Domain of unknown function (DUF3410) CDG60_12565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG60_12565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG60_12570 PF13488 Glycine zipper CDG60_12570 PF00691 OmpA family CDG60_12625 PF10431 C-terminal, D2-small domain, of ClpB protein CDG60_12625 PF17871 AAA lid domain CDG60_12625 PF07724 AAA domain (Cdc48 subfamily) CDG60_12625 PF00004 ATPase family associated with various cellular activities (AAA) CDG60_12660 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDG60_12665 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDG60_12665 PF05362 Lon protease (S16) C-terminal proteolytic domain CDG60_12665 PF00004 ATPase family associated with various cellular activities (AAA) CDG60_12675 PF04389 Peptidase family M28 CDG60_12680 PF02590 Predicted SPOUT methyltransferase CDG60_12685 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDG60_12700 PF07859 alpha/beta hydrolase fold CDG60_12705 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDG60_12705 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDG60_12715 PF04060 Putative Fe-S cluster CDG60_12720 PF10576 Iron-sulfur binding domain of endonuclease III CDG60_12720 PF00633 Helix-hairpin-helix motif CDG60_12720 PF00730 HhH-GPD superfamily base excision DNA repair protein CDG60_12730 PF05191 Adenylate kinase, active site lid CDG60_12745 PF03717 Penicillin-binding Protein dimerisation domain CDG60_12745 PF00905 Penicillin binding protein transpeptidase domain CDG60_12775 PF01553 Acyltransferase CDG60_12785 PF00463 Isocitrate lyase family CDG60_12790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_12790 PF03466 LysR substrate binding domain CDG60_12795 PF03471 Transporter associated domain CDG60_12795 PF01595 Cyclin M transmembrane N-terminal domain CDG60_12795 PF00571 CBS domain CDG60_12800 PF03600 Citrate transporter CDG60_12815 PF02801 Beta-ketoacyl synthase, C-terminal domain CDG60_12815 PF00109 Beta-ketoacyl synthase, N-terminal domain CDG60_12815 PF14765 Polyketide synthase dehydratase CDG60_12815 PF00550 Phosphopantetheine attachment site CDG60_12815 PF00698 Acyl transferase domain CDG60_12815 PF08240 Alcohol dehydrogenase GroES-like domain CDG60_12815 PF08659 KR domain CDG60_12815 PF09277 Erythronolide synthase, docking CDG60_12815 PF16197 Ketoacyl-synthetase C-terminal extension CDG60_12815 PF08990 Erythronolide synthase docking CDG60_12820 PF00085 Thioredoxin CDG60_12830 PF13180 PDZ domain CDG60_12835 PF01784 NIF3 (NGG1p interacting factor 3) CDG60_12840 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDG60_12840 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDG60_12875 PF00691 OmpA family CDG60_12875 PF01389 OmpA-like transmembrane domain CDG60_12910 PF01040 UbiA prenyltransferase family CDG60_12915 PF04345 Chorismate lyase CDG60_12925 PF00970 Oxidoreductase FAD-binding domain CDG60_12925 PF00175 Oxidoreductase NAD-binding domain CDG60_12925 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG60_12930 PF00171 Aldehyde dehydrogenase family CDG60_12935 PF00355 Rieske [2Fe-2S] domain CDG60_12935 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDG60_12940 PF07859 alpha/beta hydrolase fold CDG60_12945 PF02028 BCCT, betaine/carnitine/choline family transporter CDG60_12955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_12955 PF03466 LysR substrate binding domain CDG60_12975 PF00117 Glutamine amidotransferase class-I CDG60_12980 PF00591 Glycosyl transferase family, a/b domain CDG60_12980 PF02885 Glycosyl transferase family, helical bundle domain CDG60_12985 PF00218 Indole-3-glycerol phosphate synthase CDG60_13020 PF13382 Adenine deaminase C-terminal domain CDG60_13020 PF01979 Amidohydrolase family CDG60_13050 PF05675 Protein of unknown function (DUF817) CDG60_13055 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDG60_13065 PF17954 Quercetinase C-terminal cupin domain CDG60_13065 PF02678 Pirin CDG60_13075 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDG60_13075 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDG60_13080 PF00857 Isochorismatase family CDG60_13080 PF00550 Phosphopantetheine attachment site CDG60_13085 PF00550 Phosphopantetheine attachment site CDG60_13085 PF00857 Isochorismatase family CDG60_13090 PF00501 AMP-binding enzyme CDG60_13090 PF13193 AMP-binding enzyme C-terminal domain CDG60_13095 PF00425 chorismate binding enzyme CDG60_13100 PF00106 short chain dehydrogenase CDG60_13105 PF00501 AMP-binding enzyme CDG60_13105 PF13193 AMP-binding enzyme C-terminal domain CDG60_13105 PF00550 Phosphopantetheine attachment site CDG60_13105 PF00668 Condensation domain CDG60_13110 PF04954 Siderophore-interacting protein CDG60_13110 PF08021 Siderophore-interacting FAD-binding domain CDG60_13115 PF01497 Periplasmic binding protein CDG60_13120 PF01032 FecCD transport family CDG60_13125 PF01032 FecCD transport family CDG60_13130 PF00005 ABC transporter CDG60_13150 PF00580 UvrD/REP helicase N-terminal domain CDG60_13150 PF13361 UvrD-like helicase C-terminal domain CDG60_13160 PF00009 Elongation factor Tu GTP binding domain CDG60_13165 PF01507 Phosphoadenosine phosphosulfate reductase family CDG60_13175 PF14052 Capsule assembly protein Wzi CDG60_13180 PF00152 tRNA synthetases class II (D, K and N) CDG60_13180 PF01336 OB-fold nucleic acid binding domain CDG60_13190 PF00156 Phosphoribosyl transferase domain CDG60_13195 PF00301 Rubredoxin CDG60_13200 PF18113 Rubredoxin binding C-terminal domain CDG60_13200 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_13205 PF00561 alpha/beta hydrolase fold CDG60_13210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_13210 PF03466 LysR substrate binding domain CDG60_13220 PF02503 Polyphosphate kinase middle domain CDG60_13220 PF13090 Polyphosphate kinase C-terminal domain 2 CDG60_13220 PF13089 Polyphosphate kinase N-terminal domain CDG60_13220 PF17941 Polyphosphate kinase C-terminal domain 1 CDG60_13225 PF00912 Transglycosylase CDG60_13230 PF01694 Rhomboid family CDG60_13240 PF00005 ABC transporter CDG60_13245 PF13472 GDSL-like Lipase/Acylhydrolase family CDG60_13250 PF00484 Carbonic anhydrase CDG60_13255 PF00561 alpha/beta hydrolase fold CDG60_13265 PF10119 Predicted methyltransferase regulatory domain CDG60_13265 PF13847 Methyltransferase domain CDG60_13270 PF00593 TonB dependent receptor CDG60_13270 PF07715 TonB-dependent Receptor Plug Domain CDG60_13275 PF01521 Iron-sulphur cluster biosynthesis CDG60_13275 PF01106 NifU-like domain CDG60_13285 PF00884 Sulfatase CDG60_13290 PF03781 Sulfatase-modifying factor enzyme 1 CDG60_13300 PF01384 Phosphate transporter family CDG60_13305 PF02310 B12 binding domain CDG60_13305 PF02607 B12 binding domain CDG60_13305 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDG60_13305 PF00809 Pterin binding enzyme CDG60_13305 PF02574 Homocysteine S-methyltransferase CDG60_13315 PF04480 Protein of unknown function (DUF559) CDG60_13320 PF07690 Major Facilitator Superfamily CDG60_13325 PF02311 AraC-like ligand binding domain CDG60_13325 PF12833 Helix-turn-helix domain CDG60_13330 PF01327 Polypeptide deformylase CDG60_13340 PF00083 Sugar (and other) transporter CDG60_13340 PF08946 Osmosensory transporter coiled coil CDG60_13360 PF00378 Enoyl-CoA hydratase/isomerase CDG60_13370 PF00440 Bacterial regulatory proteins, tetR family CDG60_13390 PF00535 Glycosyl transferase family 2 CDG60_13395 PF01522 Polysaccharide deacetylase CDG60_13395 PF14883 Hypothetical glycosyl hydrolase family 13 CDG60_13405 PF00563 EAL domain CDG60_13405 PF01590 GAF domain CDG60_13405 PF00990 Diguanylate cyclase, GGDEF domain CDG60_13405 PF00360 Phytochrome region CDG60_13410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG60_13415 PF07152 YaeQ protein CDG60_13420 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDG60_13420 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDG60_13435 PF01494 FAD binding domain CDG60_13450 PF07702 UTRA domain CDG60_13450 PF00392 Bacterial regulatory proteins, gntR family CDG60_13470 PF03466 LysR substrate binding domain CDG60_13470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_13475 PF07690 Major Facilitator Superfamily CDG60_13480 PF00440 Bacterial regulatory proteins, tetR family CDG60_13485 PF03061 Thioesterase superfamily CDG60_13495 PF01734 Patatin-like phospholipase CDG60_13500 PF02417 Chromate transporter CDG60_13505 PF03616 Sodium/glutamate symporter CDG60_13515 PF00881 Nitroreductase family CDG60_13520 PF07690 Major Facilitator Superfamily CDG60_13525 PF12805 FUSC-like inner membrane protein yccS CDG60_13535 PF00667 FAD binding domain CDG60_13535 PF00258 Flavodoxin CDG60_13535 PF00175 Oxidoreductase NAD-binding domain CDG60_13595 PF04304 Protein of unknown function (DUF454) CDG60_13610 PF01546 Peptidase family M20/M25/M40 CDG60_13610 PF07687 Peptidase dimerisation domain CDG60_13620 PF01584 CheW-like domain CDG60_13620 PF02895 Signal transducing histidine kinase, homodimeric domain CDG60_13620 PF01584 CheW-like domain CDG60_13620 PF01627 Hpt domain CDG60_13620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_13620 PF01627 Hpt domain CDG60_13620 PF07194 P2 response regulator binding domain CDG60_13620 PF07194 P2 response regulator binding domain CDG60_13620 PF02895 Signal transducing histidine kinase, homodimeric domain CDG60_13620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_13625 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDG60_13625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDG60_13630 PF01584 CheW-like domain CDG60_13635 PF00072 Response regulator receiver domain CDG60_13640 PF00072 Response regulator receiver domain CDG60_13650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG60_13655 PF00873 AcrB/AcrD/AcrF family CDG60_13660 PF03129 Anticodon binding domain CDG60_13660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG60_13660 PF04073 Aminoacyl-tRNA editing domain CDG60_13685 PF00692 dUTPase CDG60_13705 PF10609 NUBPL iron-transfer P-loop NTPase CDG60_13735 PF09334 tRNA synthetases class I (M) CDG60_13735 PF01588 Putative tRNA binding domain CDG60_13775 PF13533 Biotin-lipoyl like CDG60_13780 PF00291 Pyridoxal-phosphate dependent enzyme CDG60_13790 PF05552 Conserved TM helix CDG60_13800 PF00175 Oxidoreductase NAD-binding domain CDG60_13800 PF00970 Oxidoreductase FAD-binding domain CDG60_13805 PF03466 LysR substrate binding domain CDG60_13805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_13820 PF00361 Proton-conducting membrane transporter CDG60_13825 PF00361 Proton-conducting membrane transporter CDG60_13830 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDG60_13830 PF00361 Proton-conducting membrane transporter CDG60_13835 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDG60_13840 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDG60_13845 PF12838 4Fe-4S dicluster domain CDG60_13850 PF00146 NADH dehydrogenase CDG60_13855 PF00384 Molybdopterin oxidoreductase CDG60_13855 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDG60_13855 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDG60_13860 PF10531 SLBB domain CDG60_13860 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDG60_13860 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDG60_13870 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDG60_13870 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDG60_13875 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDG60_13880 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDG60_13890 PF00348 Polyprenyl synthetase CDG60_13895 PF04303 PrpF protein CDG60_13900 PF00324 Amino acid permease CDG60_13910 PF13356 Arm DNA-binding domain CDG60_13910 PF00589 Phage integrase family CDG60_13995 PF01507 Phosphoadenosine phosphosulfate reductase family CDG60_14000 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain CDG60_14000 PF06974 Protein of unknown function (DUF1298) CDG60_14005 PF00575 S1 RNA binding domain CDG60_14005 PF10150 Ribonuclease E/G family CDG60_14010 PF02545 Maf-like protein CDG60_14015 PF04093 rod shape-determining protein MreD CDG60_14020 PF04085 rod shape-determining protein MreC CDG60_14030 PF02686 Glu-tRNAGln amidotransferase C subunit CDG60_14035 PF01425 Amidase CDG60_14040 PF02637 GatB domain CDG60_14040 PF02934 GatB/GatE catalytic domain CDG60_14050 PF00665 Integrase core domain CDG60_14050 PF13936 Helix-turn-helix domain CDG60_14075 PF03466 LysR substrate binding domain CDG60_14075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_14100 PF05992 SbmA/BacA-like family CDG60_14110 PF03852 DNA mismatch endonuclease Vsr CDG60_14120 PF00145 C-5 cytosine-specific DNA methylase CDG60_14140 PF03466 LysR substrate binding domain CDG60_14140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_14150 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDG60_14155 PF01042 Endoribonuclease L-PSP CDG60_14160 PF00171 Aldehyde dehydrogenase family CDG60_14170 PF03737 Aldolase/RraA CDG60_14180 PF01613 Flavin reductase like domain CDG60_14185 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CDG60_14185 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CDG60_14200 PF00376 MerR family regulatory protein CDG60_14200 PF09278 MerR, DNA binding CDG60_14205 PF00403 Heavy-metal-associated domain CDG60_14230 PF00083 Sugar (and other) transporter CDG60_14235 PF00171 Aldehyde dehydrogenase family CDG60_14240 PF00158 Sigma-54 interaction domain CDG60_14245 PF00465 Iron-containing alcohol dehydrogenase CDG60_14250 PF07859 alpha/beta hydrolase fold CDG60_14265 PF00743 Flavin-binding monooxygenase-like CDG60_14270 PF13936 Helix-turn-helix domain CDG60_14270 PF00665 Integrase core domain CDG60_14275 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CDG60_14275 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_14275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_14280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_14280 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CDG60_14280 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_14285 PF00296 Luciferase-like monooxygenase CDG60_14290 PF00158 Sigma-54 interaction domain CDG60_14290 PF02954 Bacterial regulatory protein, Fis family CDG60_14290 PF06505 Activator of aromatic catabolism CDG60_14290 PF02830 V4R domain CDG60_14295 PF06099 Phenol hydroxylase subunit CDG60_14300 PF02332 Methane/Phenol/Toluene Hydroxylase CDG60_14305 PF02406 MmoB/DmpM family CDG60_14310 PF02332 Methane/Phenol/Toluene Hydroxylase CDG60_14310 PF04945 YHS domain CDG60_14320 PF00175 Oxidoreductase NAD-binding domain CDG60_14320 PF00970 Oxidoreductase FAD-binding domain CDG60_14320 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG60_14330 PF00775 Dioxygenase CDG60_14330 PF04444 Catechol dioxygenase N terminus CDG60_14335 PF01926 50S ribosome-binding GTPase CDG60_14340 PF01926 50S ribosome-binding GTPase CDG60_14345 PF03466 LysR substrate binding domain CDG60_14345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_14350 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDG60_14350 PF13378 Enolase C-terminal domain-like CDG60_14355 PF02426 Muconolactone delta-isomerase CDG60_14360 PF01144 Coenzyme A transferase CDG60_14365 PF01144 Coenzyme A transferase CDG60_14370 PF00108 Thiolase, N-terminal domain CDG60_14370 PF02803 Thiolase, C-terminal domain CDG60_14375 PF12146 Serine aminopeptidase, S33 CDG60_14385 PF13784 Fic/DOC family N-terminal CDG60_14385 PF02661 Fic/DOC family CDG60_14415 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CDG60_14430 PF01039 Carboxyl transferase domain CDG60_14435 PF06857 Malonate decarboxylase delta subunit (MdcD) CDG60_14440 PF16957 Malonate decarboxylase, alpha subunit, transporter CDG60_14455 PF07729 FCD domain CDG60_14455 PF00392 Bacterial regulatory proteins, gntR family CDG60_14460 PF00392 Bacterial regulatory proteins, gntR family CDG60_14460 PF00155 Aminotransferase class I and II CDG60_14465 PF03594 Benzoate membrane transport protein CDG60_14475 PF00155 Aminotransferase class I and II CDG60_14475 PF00392 Bacterial regulatory proteins, gntR family CDG60_14480 PF00596 Class II Aldolase and Adducin N-terminal domain CDG60_14485 PF00701 Dihydrodipicolinate synthetase family CDG60_14500 PF01555 DNA methylase CDG60_14510 PF00271 Helicase conserved C-terminal domain CDG60_14510 PF00176 SNF2 family N-terminal domain CDG60_14580 PF13356 Arm DNA-binding domain CDG60_14580 PF00589 Phage integrase family CDG60_14590 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDG60_14590 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDG60_14595 PF07690 Major Facilitator Superfamily CDG60_14600 PF00529 HlyD membrane-fusion protein of T1SS CDG60_14600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG60_14605 PF03061 Thioesterase superfamily CDG60_14610 PF00490 Delta-aminolevulinic acid dehydratase CDG60_14615 PF01266 FAD dependent oxidoreductase CDG60_14620 PF08338 Domain of unknown function (DUF1731) CDG60_14620 PF01370 NAD dependent epimerase/dehydratase family CDG60_14645 PF01850 PIN domain CDG60_14650 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CDG60_14660 PF00330 Aconitase family (aconitate hydratase) CDG60_14660 PF00694 Aconitase C-terminal domain CDG60_14670 PF01571 Aminomethyltransferase folate-binding domain CDG60_14690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG60_14695 PF04966 Carbohydrate-selective porin, OprB family CDG60_14700 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDG60_14700 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDG60_14700 PF06827 Zinc finger found in FPG and IleRS CDG60_14715 PF01741 Large-conductance mechanosensitive channel, MscL CDG60_14730 PF00860 Permease family CDG60_14735 PF08468 Methyltransferase small domain N-terminal CDG60_14735 PF05175 Methyltransferase small domain CDG60_14740 PF00324 Amino acid permease CDG60_14785 PF04715 Anthranilate synthase component I, N terminal region CDG60_14785 PF00425 chorismate binding enzyme CDG60_14790 PF00155 Aminotransferase class I and II CDG60_14795 PF00815 Histidinol dehydrogenase CDG60_14805 PF01634 ATP phosphoribosyltransferase CDG60_14810 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDG60_14815 PF01722 BolA-like protein CDG60_14820 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDG60_14825 PF04963 Sigma-54 factor, core binding domain CDG60_14825 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDG60_14825 PF04552 Sigma-54, DNA binding domain CDG60_14880 PF00795 Carbon-nitrogen hydrolase CDG60_14890 PF02566 OsmC-like protein CDG60_14900 PF00437 Type II/IV secretion system protein CDG60_14910 PF12794 Mechanosensitive ion channel inner membrane domain 1 CDG60_14910 PF12795 Mechanosensitive ion channel porin domain CDG60_14910 PF00924 Mechanosensitive ion channel CDG60_14920 PF00476 DNA polymerase family A CDG60_14920 PF01612 3'-5' exonuclease CDG60_14920 PF01367 5'-3' exonuclease, C-terminal SAM fold CDG60_14920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDG60_14930 PF02325 YGGT family CDG60_14935 PF03807 NADP oxidoreductase coenzyme F420-dependent CDG60_14935 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDG60_14940 PF11734 TilS substrate C-terminal domain CDG60_14940 PF09179 TilS substrate binding domain CDG60_14940 PF01171 PP-loop family CDG60_14945 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDG60_14950 PF02541 Ppx/GppA phosphatase family CDG60_14955 PF00085 Thioredoxin CDG60_14960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG60_14960 PF07498 Rho termination factor, N-terminal domain CDG60_14960 PF07497 Rho termination factor, RNA-binding domain CDG60_14970 PF00216 Bacterial DNA-binding protein CDG60_14975 PF03483 B3/4 domain CDG60_14975 PF03484 tRNA synthetase B5 domain CDG60_14975 PF03147 Ferredoxin-fold anticodon binding domain CDG60_14975 PF01588 Putative tRNA binding domain CDG60_14975 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDG60_14980 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDG60_14980 PF01409 tRNA synthetases class II core domain (F) CDG60_15005 PF00453 Ribosomal protein L20 CDG60_15010 PF01632 Ribosomal protein L35 CDG60_15025 PF09335 SNARE associated Golgi protein CDG60_15035 PF00043 Glutathione S-transferase, C-terminal domain CDG60_15035 PF02798 Glutathione S-transferase, N-terminal domain CDG60_15045 PF05198 Translation initiation factor IF-3, N-terminal domain CDG60_15045 PF00707 Translation initiation factor IF-3, C-terminal domain CDG60_15050 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDG60_15050 PF02824 TGS domain CDG60_15050 PF03129 Anticodon binding domain CDG60_15050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG60_15060 PF04030 D-arabinono-1,4-lactone oxidase CDG60_15060 PF01565 FAD binding domain CDG60_15065 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal CDG60_15065 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal CDG60_15070 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG60_15070 PF12833 Helix-turn-helix domain CDG60_15075 PF13193 AMP-binding enzyme C-terminal domain CDG60_15075 PF00501 AMP-binding enzyme CDG60_15080 PF04751 Protein of unknown function (DUF615) CDG60_15085 PF00381 PTS HPr component phosphorylation site CDG60_15090 PF03668 P-loop ATPase protein family CDG60_15095 PF02569 Pantoate-beta-alanine ligase CDG60_15100 PF02548 Ketopantoate hydroxymethyltransferase CDG60_15105 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDG60_15110 PF01743 Poly A polymerase head domain CDG60_15110 PF12627 Probable RNA and SrmB- binding site of polymerase A CDG60_15110 PF12626 Polymerase A arginine-rich C-terminus CDG60_15120 PF03819 MazG nucleotide pyrophosphohydrolase domain CDG60_15130 PF01926 50S ribosome-binding GTPase CDG60_15130 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDG60_15135 PF13360 PQQ-like domain CDG60_15135 PF01011 PQQ enzyme repeat CDG60_15145 PF03129 Anticodon binding domain CDG60_15145 PF13393 Histidyl-tRNA synthetase CDG60_15150 PF04551 GcpE protein CDG60_15165 PF04055 Radical SAM superfamily CDG60_15170 PF00334 Nucleoside diphosphate kinase CDG60_15175 PF04384 Iron-sulphur cluster assembly CDG60_15180 PF01569 PAP2 superfamily CDG60_15185 PF00534 Glycosyl transferases group 1 CDG60_15185 PF13439 Glycosyltransferase Family 4 CDG60_15200 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDG60_15200 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CDG60_15205 PF10369 Small subunit of acetolactate synthase CDG60_15210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDG60_15210 PF00205 Thiamine pyrophosphate enzyme, central domain CDG60_15210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDG60_15230 PF08264 Anticodon-binding domain of tRNA CDG60_15230 PF00133 tRNA synthetases class I (I, L, M and V) CDG60_15230 PF09334 tRNA synthetases class I (M) CDG60_15230 PF13603 Leucyl-tRNA synthetase, Domain 2 CDG60_15245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG60_15250 PF02687 FtsX-like permease family CDG60_15250 PF00005 ABC transporter CDG60_15250 PF12704 MacB-like periplasmic core domain CDG60_15255 PF02321 Outer membrane efflux protein CDG60_15275 PF00929 Exonuclease CDG60_15280 PF03193 RsgA GTPase CDG60_15290 PF00462 Glutaredoxin CDG60_15295 PF02556 Preprotein translocase subunit SecB CDG60_15305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDG60_15305 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDG60_15310 PF07361 Cytochrome b562 CDG60_15315 PF04127 DNA / pantothenate metabolism flavoprotein CDG60_15315 PF02441 Flavoprotein CDG60_15320 PF04002 RadC-like JAB domain CDG60_15325 PF01062 Bestrophin, RFP-TM, chloride channel CDG60_15330 PF02811 PHP domain CDG60_15335 PF04279 Intracellular septation protein A CDG60_15340 PF03795 YCII-related domain CDG60_15350 PF01266 FAD dependent oxidoreductase CDG60_15350 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CDG60_15360 PF04461 Protein of unknown function (DUF520) CDG60_15375 PF03061 Thioesterase superfamily CDG60_15380 PF00085 Thioredoxin CDG60_15390 PF04273 Putative phosphatase (DUF442) CDG60_15390 PF00753 Metallo-beta-lactamase superfamily CDG60_15405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG60_15405 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_15405 PF00403 Heavy-metal-associated domain CDG60_15450 PF01066 CDP-alcohol phosphatidyltransferase CDG60_15455 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CDG60_15480 PF00056 lactate/malate dehydrogenase, NAD binding domain CDG60_15480 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDG60_15490 PF01551 Peptidase family M23 CDG60_15490 PF01464 Transglycosylase SLT domain CDG60_15490 PF10145 Phage-related minor tail protein CDG60_15495 PF00919 Uncharacterized protein family UPF0004 CDG60_15495 PF04055 Radical SAM superfamily CDG60_15495 PF01938 TRAM domain CDG60_15500 PF02562 PhoH-like protein CDG60_15505 PF02130 Uncharacterized protein family UPF0054 CDG60_15540 PF00561 alpha/beta hydrolase fold CDG60_15545 PF00171 Aldehyde dehydrogenase family CDG60_15550 PF00871 Acetokinase family CDG60_15555 PF01515 Phosphate acetyl/butaryl transferase CDG60_15555 PF07085 DRTGG domain CDG60_15565 PF13649 Methyltransferase domain CDG60_15570 PF05683 Fumarase C-terminus CDG60_15570 PF05681 Fumarate hydratase (Fumerase) CDG60_15585 PF06689 ClpX C4-type zinc finger CDG60_15585 PF10431 C-terminal, D2-small domain, of ClpB protein CDG60_15585 PF07724 AAA domain (Cdc48 subfamily) CDG60_15590 PF00574 Clp protease CDG60_15595 PF05698 Bacterial trigger factor protein (TF) C-terminus CDG60_15595 PF05697 Bacterial trigger factor protein (TF) CDG60_15595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG60_15600 PF07715 TonB-dependent Receptor Plug Domain CDG60_15600 PF00593 TonB dependent receptor CDG60_15605 PF00593 TonB dependent receptor CDG60_15605 PF07715 TonB-dependent Receptor Plug Domain CDG60_15610 PF13640 2OG-Fe(II) oxygenase superfamily CDG60_15610 PF18331 PKHD-type hydroxylase C-terminal domain CDG60_15615 PF01070 FMN-dependent dehydrogenase CDG60_15620 PF00682 HMGL-like CDG60_15620 PF08502 LeuA allosteric (dimerisation) domain CDG60_15625 PF00561 alpha/beta hydrolase fold CDG60_15630 PF00561 alpha/beta hydrolase fold CDG60_15630 PF07021 Methionine biosynthesis protein MetW CDG60_15645 PF00107 Zinc-binding dehydrogenase CDG60_15645 PF08240 Alcohol dehydrogenase GroES-like domain CDG60_15655 PF01725 Ham1 family CDG60_15665 PF02416 mttA/Hcf106 family CDG60_15670 PF02416 mttA/Hcf106 family CDG60_15675 PF00902 Sec-independent protein translocase protein (TatC) CDG60_15690 PF01790 Prolipoprotein diacylglyceryl transferase CDG60_15710 PF00303 Thymidylate synthase CDG60_15715 PF00186 Dihydrofolate reductase CDG60_15730 PF01625 Peptide methionine sulfoxide reductase CDG60_15740 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDG60_15775 PF17876 Cold shock domain CDG60_15775 PF08461 Ribonuclease R winged-helix domain CDG60_15775 PF00773 RNB domain CDG60_15775 PF00575 S1 RNA binding domain CDG60_15775 PF08206 Ribonuclease B OB domain CDG60_15785 PF01432 Peptidase family M3 CDG60_15790 PF09526 Probable metal-binding protein (DUF2387) CDG60_15810 PF00682 HMGL-like CDG60_15810 PF08502 LeuA allosteric (dimerisation) domain CDG60_15815 PF00892 EamA-like transporter family CDG60_15845 PF03937 Flavinator of succinate dehydrogenase CDG60_15850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_15850 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_15850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_15855 PF00743 Flavin-binding monooxygenase-like CDG60_15860 PF01196 Ribosomal protein L17 CDG60_15865 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDG60_15865 PF01000 RNA polymerase Rpb3/RpoA insert domain CDG60_15865 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDG60_15870 PF00163 Ribosomal protein S4/S9 N-terminal domain CDG60_15870 PF01479 S4 domain CDG60_15875 PF00411 Ribosomal protein S11 CDG60_15880 PF00416 Ribosomal protein S13/S18 CDG60_15885 PF00444 Ribosomal protein L36 CDG60_15890 PF00344 SecY translocase CDG60_15895 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDG60_15900 PF00327 Ribosomal protein L30p/L7e CDG60_15905 PF00333 Ribosomal protein S5, N-terminal domain CDG60_15905 PF03719 Ribosomal protein S5, C-terminal domain CDG60_15910 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDG60_15915 PF00347 Ribosomal protein L6 CDG60_15920 PF00410 Ribosomal protein S8 CDG60_15925 PF00253 Ribosomal protein S14p/S29e CDG60_15930 PF00673 ribosomal L5P family C-terminus CDG60_15930 PF00281 Ribosomal protein L5 CDG60_15935 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDG60_15935 PF00467 KOW motif CDG60_15940 PF00238 Ribosomal protein L14p/L23e CDG60_15945 PF00366 Ribosomal protein S17 CDG60_15950 PF00831 Ribosomal L29 protein CDG60_15955 PF00252 Ribosomal protein L16p/L10e CDG60_15960 PF00189 Ribosomal protein S3, C-terminal domain CDG60_15960 PF07650 KH domain CDG60_15965 PF00237 Ribosomal protein L22p/L17e CDG60_15970 PF00203 Ribosomal protein S19 CDG60_15975 PF03947 Ribosomal Proteins L2, C-terminal domain CDG60_15975 PF00181 Ribosomal Proteins L2, RNA binding domain CDG60_15980 PF00276 Ribosomal protein L23 CDG60_15985 PF00573 Ribosomal protein L4/L1 family CDG60_15990 PF00297 Ribosomal protein L3 CDG60_15995 PF00338 Ribosomal protein S10p/S20e CDG60_16005 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG60_16010 PF05872 Bacterial protein of unknown function (DUF853) CDG60_16040 PF00042 Globin CDG60_16040 PF00175 Oxidoreductase NAD-binding domain CDG60_16040 PF00970 Oxidoreductase FAD-binding domain CDG60_16045 PF02082 Transcriptional regulator CDG60_16050 PF01926 50S ribosome-binding GTPase CDG60_16060 PF00375 Sodium:dicarboxylate symporter family CDG60_16070 PF01553 Acyltransferase CDG60_16085 PF00271 Helicase conserved C-terminal domain CDG60_16085 PF17191 RecG wedge domain CDG60_16085 PF00270 DEAD/DEAH box helicase CDG60_16095 PF00156 Phosphoribosyl transferase domain CDG60_16100 PF00293 NUDIX domain CDG60_16105 PF03641 Possible lysine decarboxylase CDG60_16110 PF01544 CorA-like Mg2+ transporter protein CDG60_16125 PF02470 MlaD protein CDG60_16130 PF02405 Permease MlaE CDG60_16135 PF00005 ABC transporter CDG60_16140 PF00271 Helicase conserved C-terminal domain CDG60_16140 PF00270 DEAD/DEAH box helicase CDG60_16145 PF00459 Inositol monophosphatase family CDG60_16150 PF02779 Transketolase, pyrimidine binding domain CDG60_16150 PF02780 Transketolase, C-terminal domain CDG60_16150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDG60_16155 PF00925 GTP cyclohydrolase II CDG60_16160 PF06969 HemN C-terminal domain CDG60_16160 PF04055 Radical SAM superfamily CDG60_16170 PF01218 Coproporphyrinogen III oxidase CDG60_16180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDG60_16180 PF08501 Shikimate dehydrogenase substrate binding domain CDG60_16180 PF01488 Shikimate / quinate 5-dehydrogenase CDG60_16190 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG60_16190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_16190 PF02770 Acyl-CoA dehydrogenase, middle domain CDG60_16190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG60_16220 PF02350 UDP-N-acetylglucosamine 2-epimerase CDG60_16235 PF06969 HemN C-terminal domain CDG60_16235 PF04055 Radical SAM superfamily CDG60_16250 PF01554 MatE CDG60_16260 PF03109 ABC1 family CDG60_16265 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CDG60_16285 PF01209 ubiE/COQ5 methyltransferase family CDG60_16300 PF13614 AAA domain CDG60_16305 PF01594 AI-2E family transporter CDG60_16310 PF00080 Copper/zinc superoxide dismutase (SODC) CDG60_16315 PF12805 FUSC-like inner membrane protein yccS CDG60_16320 PF12823 Domain of unknown function (DUF3817) CDG60_16325 PF07690 Major Facilitator Superfamily CDG60_16335 PF05726 Pirin C-terminal cupin domain CDG60_16335 PF02678 Pirin CDG60_16365 PF01565 FAD binding domain CDG60_16365 PF02913 FAD linked oxidases, C-terminal domain CDG60_16375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG60_16375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG60_16380 PF00892 EamA-like transporter family CDG60_16390 PF00892 EamA-like transporter family CDG60_16395 PF01925 Sulfite exporter TauE/SafE CDG60_16400 PF09157 Pseudouridine synthase II TruB, C-terminal CDG60_16400 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDG60_16400 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDG60_16405 PF03280 Proteobacterial lipase chaperone protein CDG60_16410 PF00561 alpha/beta hydrolase fold CDG60_16415 PF00561 alpha/beta hydrolase fold CDG60_16420 PF00114 Pilin (bacterial filament) CDG60_16420 PF07963 Prokaryotic N-terminal methylation motif CDG60_16425 PF07963 Prokaryotic N-terminal methylation motif CDG60_16425 PF00114 Pilin (bacterial filament) CDG60_16455 PF01245 Ribosomal protein L19 CDG60_16460 PF01746 tRNA (Guanine-1)-methyltransferase CDG60_16465 PF01782 RimM N-terminal domain CDG60_16465 PF05239 PRC-barrel domain CDG60_16470 PF00886 Ribosomal protein S16 CDG60_16480 PF00114 Pilin (bacterial filament) CDG60_16480 PF07963 Prokaryotic N-terminal methylation motif CDG60_16510 PF07963 Prokaryotic N-terminal methylation motif CDG60_16510 PF00114 Pilin (bacterial filament) CDG60_16540 PF02401 LytB protein CDG60_16545 PF00625 Guanylate kinase CDG60_16550 PF01192 RNA polymerase Rpb6 CDG60_16555 PF04607 Region found in RelA / SpoT proteins CDG60_16555 PF13291 ACT domain CDG60_16555 PF02824 TGS domain CDG60_16560 PF01042 Endoribonuclease L-PSP CDG60_16565 PF04324 BFD-like [2Fe-2S] binding domain CDG60_16570 PF00210 Ferritin-like domain CDG60_16575 PF15864 Protein glycosylation ligase CDG60_16575 PF11846 Virulence factor membrane-bound polymerase, C-terminal CDG60_16575 PF04932 O-Antigen ligase CDG60_16585 PF00114 Pilin (bacterial filament) CDG60_16585 PF07963 Prokaryotic N-terminal methylation motif CDG60_16590 PF15864 Protein glycosylation ligase CDG60_16590 PF11846 Virulence factor membrane-bound polymerase, C-terminal CDG60_16590 PF04932 O-Antigen ligase CDG60_16595 PF00114 Pilin (bacterial filament) CDG60_16595 PF07963 Prokaryotic N-terminal methylation motif CDG60_16605 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CDG60_16610 PF07963 Prokaryotic N-terminal methylation motif CDG60_16610 PF00114 Pilin (bacterial filament) CDG60_16615 PF00884 Sulfatase CDG60_16615 PF08019 Phosphoethanolamine transferase EptA/EptB CDG60_16630 PF00144 Beta-lactamase CDG60_16635 PF00114 Pilin (bacterial filament) CDG60_16635 PF07963 Prokaryotic N-terminal methylation motif CDG60_16705 PF04536 TPM domain CDG60_16710 PF04011 LemA family CDG60_16720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG60_16720 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDG60_16725 PF04898 Glutamate synthase central domain CDG60_16725 PF01645 Conserved region in glutamate synthase CDG60_16725 PF01493 GXGXG motif CDG60_16725 PF00310 Glutamine amidotransferases class-II CDG60_16735 PF01761 3-dehydroquinate synthase CDG60_16740 PF01202 Shikimate kinase CDG60_16745 PF07660 Secretin and TonB N terminus short domain CDG60_16745 PF00263 Bacterial type II and III secretion system protein CDG60_16745 PF03958 Bacterial type II/III secretion system short domain CDG60_16745 PF11741 AMIN domain CDG60_16770 PF00912 Transglycosylase CDG60_16770 PF00905 Penicillin binding protein transpeptidase domain CDG60_16770 PF17092 Penicillin-binding protein OB-like domain CDG60_16775 PF13847 Methyltransferase domain CDG60_16780 PF00953 Glycosyl transferase family 4 CDG60_16785 PF01225 Mur ligase family, catalytic domain CDG60_16785 PF02875 Mur ligase family, glutamate ligase domain CDG60_16785 PF08245 Mur ligase middle domain CDG60_16790 PF02875 Mur ligase family, glutamate ligase domain CDG60_16790 PF08245 Mur ligase middle domain CDG60_16790 PF01225 Mur ligase family, catalytic domain CDG60_16795 PF03717 Penicillin-binding Protein dimerisation domain CDG60_16795 PF00905 Penicillin binding protein transpeptidase domain CDG60_16800 PF04999 Cell division protein FtsL CDG60_16805 PF01795 MraW methylase family CDG60_16810 PF13673 Acetyltransferase (GNAT) domain CDG60_16810 PF00583 Acetyltransferase (GNAT) family CDG60_16835 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG60_16855 PF01545 Cation efflux family CDG60_16865 PF00873 AcrB/AcrD/AcrF family CDG60_16875 PF02321 Outer membrane efflux protein CDG60_16885 PF12848 ABC transporter CDG60_16885 PF00005 ABC transporter CDG60_16890 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG60_16895 PF00106 short chain dehydrogenase CDG60_16905 PF09371 Tex-like protein N-terminal domain CDG60_16905 PF16921 Tex protein YqgF-like domain CDG60_16905 PF17674 HHH domain CDG60_16905 PF00575 S1 RNA binding domain CDG60_16910 PF00486 Transcriptional regulatory protein, C terminal CDG60_16910 PF00072 Response regulator receiver domain CDG60_16915 PF00672 HAMP domain CDG60_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_16915 PF00512 His Kinase A (phospho-acceptor) domain CDG60_16920 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDG60_16920 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDG60_16970 PF00475 Imidazoleglycerol-phosphate dehydratase CDG60_16975 PF00117 Glutamine amidotransferase class-I CDG60_16990 PF00977 Histidine biosynthesis protein CDG60_17000 PF00313 'Cold-shock' DNA-binding domain CDG60_17005 PF01636 Phosphotransferase enzyme family CDG60_17010 PF00977 Histidine biosynthesis protein CDG60_17020 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG60_17020 PF12833 Helix-turn-helix domain CDG60_17025 PF00230 Major intrinsic protein CDG60_17040 PF02705 K+ potassium transporter CDG60_17060 PF08241 Methyltransferase domain CDG60_17065 PF01593 Flavin containing amine oxidoreductase CDG60_17070 PF05726 Pirin C-terminal cupin domain CDG60_17070 PF02678 Pirin CDG60_17075 PF00857 Isochorismatase family CDG60_17080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_17080 PF03466 LysR substrate binding domain CDG60_17095 PF00578 AhpC/TSA family CDG60_17095 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDG60_17115 PF00436 Single-strand binding protein family CDG60_17120 PF07690 Major Facilitator Superfamily CDG60_17130 PF03070 TENA/THI-4/PQQC family CDG60_17130 PF02581 Thiamine monophosphate synthase CDG60_17130 PF08543 Phosphomethylpyrimidine kinase CDG60_17145 PF06942 GlpM protein CDG60_17155 PF17760 UvrA interaction domain CDG60_17155 PF17755 UvrA DNA-binding domain CDG60_17155 PF00005 ABC transporter CDG60_17165 PF00905 Penicillin binding protein transpeptidase domain CDG60_17175 PF00990 Diguanylate cyclase, GGDEF domain CDG60_17185 PF02028 BCCT, betaine/carnitine/choline family transporter CDG60_17195 PF00474 Sodium:solute symporter family CDG60_17200 PF04341 Protein of unknown function, DUF485 CDG60_17205 PF00072 Response regulator receiver domain CDG60_17205 PF09456 RcsC Alpha-Beta-Loop (ABL) CDG60_17205 PF00512 His Kinase A (phospho-acceptor) domain CDG60_17205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_17215 PF00072 Response regulator receiver domain CDG60_17215 PF00196 Bacterial regulatory proteins, luxR family CDG60_17220 PF03358 NADPH-dependent FMN reductase CDG60_17225 PF00296 Luciferase-like monooxygenase CDG60_17230 PF00144 Beta-lactamase CDG60_17240 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CDG60_17240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG60_17245 PF13193 AMP-binding enzyme C-terminal domain CDG60_17245 PF16177 Acetyl-coenzyme A synthetase N-terminus CDG60_17245 PF00501 AMP-binding enzyme CDG60_17250 PF05656 Protein of unknown function (DUF805) CDG60_17255 PF01757 Acyltransferase family CDG60_17260 PF00924 Mechanosensitive ion channel CDG60_17265 PF04452 RNA methyltransferase CDG60_17270 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDG60_17280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG60_17305 PF17768 RecJ OB domain CDG60_17305 PF02272 DHHA1 domain CDG60_17305 PF01368 DHH family CDG60_17310 PF01243 Pyridoxamine 5'-phosphate oxidase CDG60_17310 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CDG60_17315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG60_17315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG60_17315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG60_17315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG60_17320 PF00478 IMP dehydrogenase / GMP reductase domain CDG60_17320 PF00571 CBS domain CDG60_17330 PF03692 Putative zinc- or iron-chelating domain CDG60_17335 PF00258 Flavodoxin CDG60_17335 PF01613 Flavin reductase like domain CDG60_17340 PF01169 Uncharacterized protein family UPF0016 CDG60_17345 PF02817 e3 binding domain CDG60_17345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDG60_17345 PF00364 Biotin-requiring enzyme CDG60_17350 PF17831 Pyruvate dehydrogenase E1 component middle domain CDG60_17350 PF00456 Transketolase, thiamine diphosphate binding domain CDG60_17365 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDG60_17370 PF12327 FtsZ family, C-terminal domain CDG60_17370 PF00091 Tubulin/FtsZ family, GTPase domain CDG60_17375 PF02491 SHS2 domain inserted in FTSA CDG60_17380 PF08478 POTRA domain, FtsQ-type CDG60_17380 PF03799 Cell division protein FtsQ CDG60_17385 PF07478 D-ala D-ala ligase C-terminus CDG60_17385 PF01820 D-ala D-ala ligase N-terminus CDG60_17390 PF08245 Mur ligase middle domain CDG60_17390 PF02875 Mur ligase family, glutamate ligase domain CDG60_17390 PF01225 Mur ligase family, catalytic domain CDG60_17395 PF04101 Glycosyltransferase family 28 C-terminal domain CDG60_17395 PF03033 Glycosyltransferase family 28 N-terminal domain CDG60_17400 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDG60_17400 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDG60_17410 PF00156 Phosphoribosyl transferase domain CDG60_17415 PF03372 Endonuclease/Exonuclease/phosphatase family CDG60_17430 PF07859 alpha/beta hydrolase fold CDG60_17435 PF02525 Flavodoxin-like fold CDG60_17440 PF17151 Periplasmic sensor domain CDG60_17440 PF00990 Diguanylate cyclase, GGDEF domain CDG60_17470 PF00583 Acetyltransferase (GNAT) family CDG60_17490 PF00204 DNA gyrase B CDG60_17490 PF01751 Toprim domain CDG60_17490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_17490 PF00986 DNA gyrase B subunit, carboxyl terminus CDG60_17495 PF05728 Uncharacterised protein family (UPF0227) CDG60_17505 PF02600 Disulfide bond formation protein DsbB CDG60_17510 PF04262 Glutamate-cysteine ligase CDG60_17520 PF01872 RibD C-terminal domain CDG60_17530 PF04286 Protein of unknown function (DUF445) CDG60_17555 PF12833 Helix-turn-helix domain CDG60_17555 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG60_17565 PF00155 Aminotransferase class I and II CDG60_17570 PF01554 MatE CDG60_17575 PF00106 short chain dehydrogenase CDG60_17585 PF00486 Transcriptional regulatory protein, C terminal CDG60_17585 PF00072 Response regulator receiver domain CDG60_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG60_17590 PF11808 Phosphate regulon sensor protein PhoR CDG60_17590 PF00989 PAS fold CDG60_17590 PF00512 His Kinase A (phospho-acceptor) domain CDG60_17595 PF02666 Phosphatidylserine decarboxylase CDG60_17600 PF00581 Rhodanese-like domain CDG60_17605 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CDG60_17605 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CDG60_17615 PF00199 Catalase CDG60_17615 PF06628 Catalase-related immune-responsive CDG60_17620 PF02580 D-Tyr-tRNA(Tyr) deacylase CDG60_17650 PF13090 Polyphosphate kinase C-terminal domain 2 CDG60_17650 PF17941 Polyphosphate kinase C-terminal domain 1 CDG60_17650 PF02503 Polyphosphate kinase middle domain CDG60_17650 PF13089 Polyphosphate kinase N-terminal domain CDG60_17655 PF01758 Sodium Bile acid symporter family CDG60_17660 PF00857 Isochorismatase family CDG60_17665 PF07690 Major Facilitator Superfamily CDG60_17670 PF00701 Dihydrodipicolinate synthetase family CDG60_17680 PF01259 SAICAR synthetase CDG60_17685 PF16193 AAA C-terminal domain CDG60_17685 PF00004 ATPase family associated with various cellular activities (AAA) CDG60_17685 PF12002 MgsA AAA+ ATPase C terminal CDG60_17690 PF08448 PAS fold CDG60_17690 PF08447 PAS fold CDG60_17690 PF00990 Diguanylate cyclase, GGDEF domain CDG60_17690 PF00563 EAL domain CDG60_17695 PF04463 Protein of unknown function (DUF523) CDG60_17700 PF03692 Putative zinc- or iron-chelating domain CDG60_17705 PF07043 Protein of unknown function (DUF1328) CDG60_17715 PF01230 HIT domain CDG60_17720 PF00730 HhH-GPD superfamily base excision DNA repair protein CDG60_17720 PF14815 NUDIX domain CDG60_17720 PF00633 Helix-hairpin-helix motif CDG60_17735 PF03352 Methyladenine glycosylase CDG60_17740 PF00107 Zinc-binding dehydrogenase CDG60_17740 PF08240 Alcohol dehydrogenase GroES-like domain CDG60_17745 PF00155 Aminotransferase class I and II CDG60_17755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG60_17755 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDG60_17760 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDG60_17760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG60_17765 PF03023 Lipid II flippase MurJ CDG60_17770 PF01510 N-acetylmuramoyl-L-alanine amidase CDG60_17775 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDG60_17775 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDG60_17785 PF05506 Domain of unknown function (DUF756) CDG60_17785 PF04185 Phosphoesterase family CDG60_17790 PF01138 3' exoribonuclease family, domain 1 CDG60_17790 PF03725 3' exoribonuclease family, domain 2 CDG60_17795 PF00311 Phosphoenolpyruvate carboxylase CDG60_17800 PF00860 Permease family CDG60_17805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG60_17805 PF03466 LysR substrate binding domain CDG60_17815 PF00120 Glutamine synthetase, catalytic domain CDG60_17830 PF00920 Dehydratase family CDG60_17835 PF01389 OmpA-like transmembrane domain CDG60_17835 PF00691 OmpA family CDG60_17840 PF05658 Head domain of trimeric autotransporter adhesin CDG60_17840 PF05662 Coiled stalk of trimeric autotransporter adhesin CDG60_17840 PF13018 Extended Signal Peptide of Type V secretion system CDG60_17840 PF03895 YadA-like membrane anchor domain CDG60_17840 PF13018 Extended Signal Peptide of Type V secretion system CDG60_17840 PF05658 Head domain of trimeric autotransporter adhesin CDG60_17840 PF05662 Coiled stalk of trimeric autotransporter adhesin CDG60_17840 PF03895 YadA-like membrane anchor domain CDG60_17845 PF00551 Formyl transferase CDG60_17845 PF02911 Formyl transferase, C-terminal domain CDG60_17850 PF01189 16S rRNA methyltransferase RsmB/F CDG60_17850 PF01029 NusB family CDG60_17860 PF00209 Sodium:neurotransmitter symporter family CDG60_17865 PF06940 Domain of unknown function (DUF1287) CDG60_17870 PF00171 Aldehyde dehydrogenase family CDG60_17880 PF07690 Major Facilitator Superfamily CDG60_17920 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDG60_17930 PF07859 alpha/beta hydrolase fold CDG60_17945 PF01025 GrpE CDG60_17950 PF00012 Hsp70 protein CDG60_17955 PF00684 DnaJ central domain CDG60_17955 PF01556 DnaJ C terminal domain CDG60_17955 PF00226 DnaJ domain CDG60_17985 PF13406 Transglycosylase SLT domain CDG60_17990 PF02222 ATP-grasp domain CDG60_17990 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDG60_17995 PF00731 AIR carboxylase CDG60_18005 PF08245 Mur ligase middle domain CDG60_18005 PF02875 Mur ligase family, glutamate ligase domain CDG60_18005 PF01225 Mur ligase family, catalytic domain CDG60_18020 PF14542 GCN5-related N-acetyl-transferase CDG60_18025 PF14542 GCN5-related N-acetyl-transferase CDG60_18035 PF03741 Integral membrane protein TerC family CDG60_18050 PF03738 Glutathionylspermidine synthase preATP-grasp CDG60_18065 PF01979 Amidohydrolase family CDG60_18070 PF00156 Phosphoribosyl transferase domain CDG60_18080 PF13098 Thioredoxin-like domain CDG60_18080 PF10411 Disulfide bond isomerase protein N-terminus CDG60_18085 PF04076 Bacterial OB fold (BOF) protein CDG60_18090 PF01926 50S ribosome-binding GTPase CDG60_18090 PF12631 MnmE helical domain CDG60_18090 PF10396 GTP-binding protein TrmE N-terminus CDG60_18095 PF14849 YidC periplasmic domain CDG60_18095 PF02096 60Kd inner membrane protein CDG60_18100 PF01809 Putative membrane protein insertion efficiency factor CDG60_18105 PF00825 Ribonuclease P CDG60_18110 PF00468 Ribosomal protein L34