locus-tag class description C9E88_000005 PF00593 TonB dependent receptor C9E88_000005 PF07715 TonB-dependent Receptor Plug Domain C9E88_000010 PF03573 outer membrane porin, OprD family C9E88_000020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_000020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_000020 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_000020 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_000025 PF00501 AMP-binding enzyme C9E88_000025 PF13193 AMP-binding enzyme C-terminal domain C9E88_000030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C9E88_000030 PF00378 Enoyl-CoA hydratase/isomerase C9E88_000030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C9E88_000035 PF07690 Major Facilitator Superfamily C9E88_000045 PF00440 Bacterial regulatory proteins, tetR family C9E88_000045 PF08360 QacR-like protein, C-terminal region C9E88_000090 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C9E88_000090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C9E88_000095 PF07690 Major Facilitator Superfamily C9E88_000100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_000100 PF00529 HlyD membrane-fusion protein of T1SS C9E88_000105 PF03061 Thioesterase superfamily C9E88_000110 PF00490 Delta-aminolevulinic acid dehydratase C9E88_000120 PF01266 FAD dependent oxidoreductase C9E88_000140 PF00149 Calcineurin-like phosphoesterase C9E88_000140 PF12320 Type 5 capsule protein repressor C-terminal domain C9E88_000150 PF01168 Alanine racemase, N-terminal domain C9E88_000155 PF00437 Type II/IV secretion system protein C9E88_000160 PF00437 Type II/IV secretion system protein C9E88_000165 PF01475 Ferric uptake regulator family C9E88_000170 PF04355 SmpA / OmlA family C9E88_000175 PF03658 RnfH family Ubiquitin C9E88_000185 PF01814 Hemerythrin HHE cation binding domain C9E88_000190 PF13230 Glutamine amidotransferases class-II C9E88_000200 PF00696 Amino acid kinase family C9E88_000205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C9E88_000205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C9E88_000205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C9E88_000205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C9E88_000210 PF00692 dUTPase C9E88_000215 PF00580 UvrD/REP helicase N-terminal domain C9E88_000215 PF13361 UvrD-like helicase C-terminal domain C9E88_000230 PF00361 Proton-conducting membrane transporter C9E88_000235 PF00361 Proton-conducting membrane transporter C9E88_000240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C9E88_000240 PF00361 Proton-conducting membrane transporter C9E88_000245 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C9E88_000250 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C9E88_000255 PF12838 4Fe-4S dicluster domain C9E88_000260 PF00146 NADH dehydrogenase C9E88_000265 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C9E88_000265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C9E88_000265 PF00384 Molybdopterin oxidoreductase C9E88_000270 PF10531 SLBB domain C9E88_000270 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C9E88_000270 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C9E88_000280 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C9E88_000280 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C9E88_000285 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C9E88_000290 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C9E88_000300 PF00672 HAMP domain C9E88_000300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_000300 PF00512 His Kinase A (phospho-acceptor) domain C9E88_000305 PF00072 Response regulator receiver domain C9E88_000305 PF00486 Transcriptional regulatory protein, C terminal C9E88_000310 PF03477 ATP cone domain C9E88_000310 PF00317 Ribonucleotide reductase, all-alpha domain C9E88_000310 PF02867 Ribonucleotide reductase, barrel domain C9E88_000315 PF00268 Ribonucleotide reductase, small chain C9E88_000325 PF00593 TonB dependent receptor C9E88_000325 PF07715 TonB-dependent Receptor Plug Domain C9E88_000330 PF01011 PQQ enzyme repeat C9E88_000335 PF04966 Carbohydrate-selective porin, OprB family C9E88_000350 PF13419 Haloacid dehalogenase-like hydrolase C9E88_000355 PF08543 Phosphomethylpyrimidine kinase C9E88_000355 PF03070 TENA/THI-4/PQQC family C9E88_000355 PF02581 Thiamine monophosphate synthase C9E88_000360 PF06674 Protein of unknown function (DUF1176) C9E88_000365 PF01594 AI-2E family transporter C9E88_000380 PF07411 Domain of unknown function (DUF1508) C9E88_000390 PF08274 PhnA Zinc-Ribbon C9E88_000390 PF03831 PhnA domain C9E88_000405 PF00849 RNA pseudouridylate synthase C9E88_000450 PF00330 Aconitase family (aconitate hydratase) C9E88_000450 PF00694 Aconitase C-terminal domain C9E88_000455 PF01571 Aminomethyltransferase folate-binding domain C9E88_000495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_000500 PF04966 Carbohydrate-selective porin, OprB family C9E88_000505 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C9E88_000505 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C9E88_000505 PF06827 Zinc finger found in FPG and IleRS C9E88_000515 PF09334 tRNA synthetases class I (M) C9E88_000515 PF01588 Putative tRNA binding domain C9E88_000525 PF05643 Putative bacterial lipoprotein (DUF799) C9E88_000535 PF03783 Curli production assembly/transport component CsgG C9E88_000565 PF13533 Biotin-lipoyl like C9E88_000580 PF05552 Conserved TM helix C9E88_000585 PF05985 Ethanolamine ammonia-lyase light chain (EutC) C9E88_000590 PF06751 Ethanolamine ammonia lyase large subunit (EutB) C9E88_000595 PF13520 Amino acid permease C9E88_000605 PF01741 Large-conductance mechanosensitive channel, MscL C9E88_000615 PF00860 Permease family C9E88_000620 PF08468 Methyltransferase small domain N-terminal C9E88_000620 PF05175 Methyltransferase small domain C9E88_000625 PF00324 Amino acid permease C9E88_000635 PF00691 OmpA family C9E88_000635 PF13505 Outer membrane protein beta-barrel domain C9E88_000640 PF00114 Pilin (bacterial filament) C9E88_000640 PF07963 Prokaryotic N-terminal methylation motif C9E88_000645 PF00108 Thiolase, N-terminal domain C9E88_000645 PF02803 Thiolase, C-terminal domain C9E88_000655 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C9E88_000665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C9E88_000665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C9E88_000670 PF02515 CoA-transferase family III C9E88_000675 PF12833 Helix-turn-helix domain C9E88_000675 PF02311 AraC-like ligand binding domain C9E88_000685 PF02803 Thiolase, C-terminal domain C9E88_000685 PF00108 Thiolase, N-terminal domain C9E88_000690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C9E88_000690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C9E88_000690 PF00378 Enoyl-CoA hydratase/isomerase C9E88_000720 PF03006 Haemolysin-III related C9E88_000725 PF07690 Major Facilitator Superfamily C9E88_000725 PF00083 Sugar (and other) transporter C9E88_000735 PF00149 Calcineurin-like phosphoesterase C9E88_000735 PF10518 TAT (twin-arginine translocation) pathway signal sequence C9E88_000740 PF13091 PLD-like domain C9E88_000745 PF01553 Acyltransferase C9E88_000750 PF13167 GTP-binding GTPase N-terminal C9E88_000750 PF16360 GTP-binding GTPase Middle Region C9E88_000750 PF01926 50S ribosome-binding GTPase C9E88_000785 PF00149 Calcineurin-like phosphoesterase C9E88_000790 PF00398 Ribosomal RNA adenine dimethylase C9E88_000795 PF04166 Pyridoxal phosphate biosynthetic protein PdxA C9E88_000800 PF00572 Ribosomal protein L13 C9E88_000805 PF00380 Ribosomal protein S9/S16 C9E88_000820 PF00043 Glutathione S-transferase, C-terminal domain C9E88_000820 PF02798 Glutathione S-transferase, N-terminal domain C9E88_000825 PF04386 Stringent starvation protein B C9E88_000890 PF00990 Diguanylate cyclase, GGDEF domain C9E88_000890 PF00563 EAL domain C9E88_000890 PF08448 PAS fold C9E88_000890 PF08447 PAS fold C9E88_000895 PF00691 OmpA family C9E88_000895 PF13677 Membrane MotB of proton-channel complex MotA/MotB C9E88_000920 PF02445 Quinolinate synthetase A protein C9E88_000925 PF01960 ArgJ family C9E88_000935 PF07517 SecA DEAD-like domain C9E88_000935 PF01043 SecA preprotein cross-linking domain C9E88_000935 PF02810 SEC-C motif C9E88_000935 PF07516 SecA Wing and Scaffold domain C9E88_000940 PF10417 C-terminal domain of 1-Cys peroxiredoxin C9E88_000940 PF00578 AhpC/TSA family C9E88_000945 PF00753 Metallo-beta-lactamase superfamily C9E88_000960 PF02875 Mur ligase family, glutamate ligase domain C9E88_000960 PF08245 Mur ligase middle domain C9E88_000965 PF01039 Carboxyl transferase domain C9E88_000970 PF00290 Tryptophan synthase alpha chain C9E88_000980 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C9E88_000980 PF12833 Helix-turn-helix domain C9E88_001010 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_001015 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C9E88_001020 PF00593 TonB dependent receptor C9E88_001020 PF07715 TonB-dependent Receptor Plug Domain C9E88_001025 PF07715 TonB-dependent Receptor Plug Domain C9E88_001025 PF00593 TonB dependent receptor C9E88_001030 PF01923 Cobalamin adenosyltransferase C9E88_001045 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C9E88_001055 PF01757 Acyltransferase family C9E88_001060 PF00324 Amino acid permease C9E88_001065 PF00486 Transcriptional regulatory protein, C terminal C9E88_001065 PF00072 Response regulator receiver domain C9E88_001070 PF00512 His Kinase A (phospho-acceptor) domain C9E88_001070 PF00672 HAMP domain C9E88_001070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_001080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_001080 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_001080 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_001080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_001085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_001085 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_001085 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_001085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_001105 PF06146 Phosphate-starvation-inducible E C9E88_001125 PF07715 TonB-dependent Receptor Plug Domain C9E88_001125 PF00593 TonB dependent receptor C9E88_001135 PF01336 OB-fold nucleic acid binding domain C9E88_001135 PF00152 tRNA synthetases class II (D, K and N) C9E88_001135 PF02938 GAD domain C9E88_001150 PF13439 Glycosyltransferase Family 4 C9E88_001150 PF00534 Glycosyl transferases group 1 C9E88_001155 PF00534 Glycosyl transferases group 1 C9E88_001155 PF13439 Glycosyltransferase Family 4 C9E88_001165 PF13439 Glycosyltransferase Family 4 C9E88_001165 PF00534 Glycosyl transferases group 1 C9E88_001170 PF00535 Glycosyl transferase family 2 C9E88_001175 PF01522 Polysaccharide deacetylase C9E88_001190 PF01063 Amino-transferase class IV C9E88_001195 PF08335 GlnD PII-uridylyltransferase C9E88_001195 PF03710 Glutamate-ammonia ligase adenylyltransferase C9E88_001205 PF03971 Monomeric isocitrate dehydrogenase C9E88_001220 PF02547 Queuosine biosynthesis protein C9E88_001230 PF04011 LemA family C9E88_001240 PF01702 Queuine tRNA-ribosyltransferase C9E88_001245 PF02699 Preprotein translocase subunit C9E88_001250 PF07549 SecD/SecF GG Motif C9E88_001250 PF13721 SecD export protein N-terminal TM region C9E88_001250 PF02355 Protein export membrane protein C9E88_001255 PF07549 SecD/SecF GG Motif C9E88_001255 PF02355 Protein export membrane protein C9E88_001265 PF02824 TGS domain C9E88_001265 PF13291 ACT domain C9E88_001265 PF04607 Region found in RelA / SpoT proteins C9E88_001270 PF05958 tRNA (Uracil-5-)-methyltransferase C9E88_001280 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_001285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C9E88_001285 PF00072 Response regulator receiver domain C9E88_001285 PF01627 Hpt domain C9E88_001285 PF00512 His Kinase A (phospho-acceptor) domain C9E88_001285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_001285 PF00672 HAMP domain C9E88_001290 PF00378 Enoyl-CoA hydratase/isomerase C9E88_001295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C9E88_001295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C9E88_001300 PF01261 Xylose isomerase-like TIM barrel C9E88_001315 PF02233 NAD(P) transhydrogenase beta subunit C9E88_001320 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C9E88_001325 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C9E88_001325 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C9E88_001330 PF00892 EamA-like transporter family C9E88_001335 PF09278 MerR, DNA binding C9E88_001335 PF00376 MerR family regulatory protein C9E88_001345 PF07690 Major Facilitator Superfamily C9E88_001370 PF18766 SWI2/SNF2 ATPase C9E88_001370 PF11867 Domain of unknown function (DUF3387) C9E88_001370 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C9E88_001385 PF01420 Type I restriction modification DNA specificity domain C9E88_001390 PF00270 DEAD/DEAH box helicase C9E88_001390 PF17191 RecG wedge domain C9E88_001390 PF13749 Putative ATP-dependent DNA helicase recG C-terminal C9E88_001395 PF02384 N-6 DNA Methylase C9E88_001415 PF00120 Glutamine synthetase, catalytic domain C9E88_001420 PF00072 Response regulator receiver domain C9E88_001420 PF00486 Transcriptional regulatory protein, C terminal C9E88_001425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_001425 PF00512 His Kinase A (phospho-acceptor) domain C9E88_001425 PF13492 GAF domain C9E88_001425 PF13493 Domain of unknown function (DUF4118) C9E88_001425 PF02702 Osmosensitive K+ channel His kinase sensor domain C9E88_001430 PF02669 K+-transporting ATPase, c chain C9E88_001440 PF03814 Potassium-transporting ATPase A subunit C9E88_001445 PF02673 Bacitracin resistance protein BacA C9E88_001500 PF00589 Phage integrase family C9E88_001505 PF01207 Dihydrouridine synthase (Dus) C9E88_001510 PF02441 Flavoprotein C9E88_001510 PF04127 DNA / pantothenate metabolism flavoprotein C9E88_001515 PF04002 RadC-like JAB domain C9E88_001520 PF01062 Bestrophin, RFP-TM, chloride channel C9E88_001525 PF02811 PHP domain C9E88_001530 PF04279 Intracellular septation protein A C9E88_001535 PF03795 YCII-related domain C9E88_001545 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C9E88_001545 PF01266 FAD dependent oxidoreductase C9E88_001555 PF04461 Protein of unknown function (DUF520) C9E88_001570 PF03061 Thioesterase superfamily C9E88_001575 PF00085 Thioredoxin C9E88_001585 PF00753 Metallo-beta-lactamase superfamily C9E88_001585 PF04273 Putative phosphatase (DUF442) C9E88_001595 PF00403 Heavy-metal-associated domain C9E88_001595 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_001595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C9E88_001635 PF01066 CDP-alcohol phosphatidyltransferase C9E88_001640 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C9E88_001665 PF00056 lactate/malate dehydrogenase, NAD binding domain C9E88_001665 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C9E88_001675 PF10145 Phage-related minor tail protein C9E88_001675 PF01464 Transglycosylase SLT domain C9E88_001675 PF01551 Peptidase family M23 C9E88_001680 PF04055 Radical SAM superfamily C9E88_001680 PF01938 TRAM domain C9E88_001680 PF00919 Uncharacterized protein family UPF0004 C9E88_001685 PF02562 PhoH-like protein C9E88_001690 PF02130 Uncharacterized protein family UPF0054 C9E88_001725 PF09084 NMT1/THI5 like C9E88_001740 PF03358 NADPH-dependent FMN reductase C9E88_001745 PF03631 Virulence factor BrkB C9E88_001755 PF00892 EamA-like transporter family C9E88_001765 PF01557 Fumarylacetoacetate (FAA) hydrolase family C9E88_001800 PF00575 S1 RNA binding domain C9E88_001800 PF08206 Ribonuclease B OB domain C9E88_001800 PF00773 RNB domain C9E88_001800 PF08461 Ribonuclease R winged-helix domain C9E88_001800 PF17876 Cold shock domain C9E88_001815 PF01432 Peptidase family M3 C9E88_001820 PF09526 Probable metal-binding protein (DUF2387) C9E88_001830 PF00892 EamA-like transporter family C9E88_001855 PF03937 Flavinator of succinate dehydrogenase C9E88_001860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_001860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_001860 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_001870 PF00743 Flavin-binding monooxygenase-like C9E88_001875 PF01196 Ribosomal protein L17 C9E88_001880 PF01000 RNA polymerase Rpb3/RpoA insert domain C9E88_001880 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C9E88_001880 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C9E88_001885 PF00163 Ribosomal protein S4/S9 N-terminal domain C9E88_001885 PF01479 S4 domain C9E88_001890 PF00411 Ribosomal protein S11 C9E88_001895 PF00416 Ribosomal protein S13/S18 C9E88_001900 PF00444 Ribosomal protein L36 C9E88_001905 PF00344 SecY translocase C9E88_001910 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C9E88_001915 PF00327 Ribosomal protein L30p/L7e C9E88_001920 PF00333 Ribosomal protein S5, N-terminal domain C9E88_001920 PF03719 Ribosomal protein S5, C-terminal domain C9E88_001925 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C9E88_001930 PF00347 Ribosomal protein L6 C9E88_001935 PF00410 Ribosomal protein S8 C9E88_001940 PF00253 Ribosomal protein S14p/S29e C9E88_001945 PF00281 Ribosomal protein L5 C9E88_001945 PF00673 ribosomal L5P family C-terminus C9E88_001950 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C9E88_001950 PF00467 KOW motif C9E88_001955 PF00238 Ribosomal protein L14p/L23e C9E88_001960 PF00366 Ribosomal protein S17 C9E88_001965 PF00831 Ribosomal L29 protein C9E88_001970 PF00252 Ribosomal protein L16p/L10e C9E88_001975 PF07650 KH domain C9E88_001975 PF00189 Ribosomal protein S3, C-terminal domain C9E88_001980 PF00237 Ribosomal protein L22p/L17e C9E88_001985 PF00203 Ribosomal protein S19 C9E88_001990 PF03947 Ribosomal Proteins L2, C-terminal domain C9E88_001990 PF00181 Ribosomal Proteins L2, RNA binding domain C9E88_001995 PF00276 Ribosomal protein L23 C9E88_002000 PF00573 Ribosomal protein L4/L1 family C9E88_002005 PF00297 Ribosomal protein L3 C9E88_002010 PF00338 Ribosomal protein S10p/S20e C9E88_002015 PF00117 Glutamine amidotransferase class-I C9E88_002020 PF01053 Cys/Met metabolism PLP-dependent enzyme C9E88_002025 PF05872 Bacterial protein of unknown function (DUF853) C9E88_002030 PF00970 Oxidoreductase FAD-binding domain C9E88_002030 PF00042 Globin C9E88_002030 PF00175 Oxidoreductase NAD-binding domain C9E88_002035 PF02082 Transcriptional regulator C9E88_002040 PF01926 50S ribosome-binding GTPase C9E88_002050 PF00375 Sodium:dicarboxylate symporter family C9E88_002060 PF01553 Acyltransferase C9E88_002075 PF00270 DEAD/DEAH box helicase C9E88_002075 PF17191 RecG wedge domain C9E88_002075 PF00271 Helicase conserved C-terminal domain C9E88_002080 PF00156 Phosphoribosyl transferase domain C9E88_002085 PF00293 NUDIX domain C9E88_002090 PF03641 Possible lysine decarboxylase C9E88_002095 PF01544 CorA-like Mg2+ transporter protein C9E88_002115 PF02405 Permease MlaE C9E88_002120 PF00005 ABC transporter C9E88_002125 PF00271 Helicase conserved C-terminal domain C9E88_002125 PF00270 DEAD/DEAH box helicase C9E88_002125 PF03880 DbpA RNA binding domain C9E88_002125 PF12343 Cold shock protein DEAD box A C9E88_002130 PF01202 Shikimate kinase C9E88_002135 PF00459 Inositol monophosphatase family C9E88_002140 PF02779 Transketolase, pyrimidine binding domain C9E88_002140 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C9E88_002140 PF02780 Transketolase, C-terminal domain C9E88_002145 PF00925 GTP cyclohydrolase II C9E88_002155 PF04055 Radical SAM superfamily C9E88_002155 PF06969 HemN C-terminal domain C9E88_002170 PF08501 Shikimate dehydrogenase substrate binding domain C9E88_002170 PF01488 Shikimate / quinate 5-dehydrogenase C9E88_002170 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C9E88_002175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_002175 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_002175 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_002175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_002180 PF04055 Radical SAM superfamily C9E88_002180 PF06969 HemN C-terminal domain C9E88_002190 PF01554 MatE C9E88_002200 PF03109 ABC1 family C9E88_002205 PF01197 Ribosomal protein L31 C9E88_002210 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C9E88_002230 PF01209 ubiE/COQ5 methyltransferase family C9E88_002245 PF13614 AAA domain C9E88_002250 PF01594 AI-2E family transporter C9E88_002255 PF00080 Copper/zinc superoxide dismutase (SODC) C9E88_002265 PF12805 FUSC-like inner membrane protein yccS C9E88_002270 PF12823 Domain of unknown function (DUF3817) C9E88_002275 PF07690 Major Facilitator Superfamily C9E88_002280 PF05726 Pirin C-terminal cupin domain C9E88_002280 PF02678 Pirin C9E88_002295 PF01565 FAD binding domain C9E88_002295 PF02913 FAD linked oxidases, C-terminal domain C9E88_002300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_002300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_002305 PF00892 EamA-like transporter family C9E88_002315 PF00892 EamA-like transporter family C9E88_002325 PF01925 Sulfite exporter TauE/SafE C9E88_002330 PF16198 tRNA pseudouridylate synthase B C-terminal domain C9E88_002330 PF01509 TruB family pseudouridylate synthase (N terminal domain) C9E88_002330 PF09157 Pseudouridine synthase II TruB, C-terminal C9E88_002335 PF03280 Proteobacterial lipase chaperone protein C9E88_002340 PF00561 alpha/beta hydrolase fold C9E88_002345 PF00561 alpha/beta hydrolase fold C9E88_002350 PF00561 alpha/beta hydrolase fold C9E88_002355 PF00561 alpha/beta hydrolase fold C9E88_002360 PF01245 Ribosomal protein L19 C9E88_002365 PF01746 tRNA (Guanine-1)-methyltransferase C9E88_002370 PF05239 PRC-barrel domain C9E88_002370 PF01782 RimM N-terminal domain C9E88_002375 PF00886 Ribosomal protein S16 C9E88_002385 PF00114 Pilin (bacterial filament) C9E88_002385 PF07963 Prokaryotic N-terminal methylation motif C9E88_002410 PF07963 Prokaryotic N-terminal methylation motif C9E88_002410 PF00114 Pilin (bacterial filament) C9E88_002415 PF02401 LytB protein C9E88_002420 PF00625 Guanylate kinase C9E88_002425 PF01192 RNA polymerase Rpb6 C9E88_002430 PF02824 TGS domain C9E88_002430 PF13291 ACT domain C9E88_002430 PF04607 Region found in RelA / SpoT proteins C9E88_002435 PF01042 Endoribonuclease L-PSP C9E88_002440 PF04324 BFD-like [2Fe-2S] binding domain C9E88_002445 PF00210 Ferritin-like domain C9E88_002450 PF00114 Pilin (bacterial filament) C9E88_002450 PF07963 Prokaryotic N-terminal methylation motif C9E88_002455 PF13439 Glycosyltransferase Family 4 C9E88_002455 PF00534 Glycosyl transferases group 1 C9E88_002465 PF03275 UDP-galactopyranose mutase C9E88_002470 PF00535 Glycosyl transferase family 2 C9E88_002470 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase C9E88_002495 PF00005 ABC transporter C9E88_002495 PF00664 ABC transporter transmembrane region C9E88_002500 PF00535 Glycosyl transferase family 2 C9E88_002510 PF07963 Prokaryotic N-terminal methylation motif C9E88_002510 PF00114 Pilin (bacterial filament) C9E88_002520 PF04536 TPM domain C9E88_002525 PF04011 LemA family C9E88_002535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C9E88_002535 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_002540 PF00310 Glutamine amidotransferases class-II C9E88_002540 PF01493 GXGXG motif C9E88_002540 PF01645 Conserved region in glutamate synthase C9E88_002540 PF04898 Glutamate synthase central domain C9E88_002550 PF01761 3-dehydroquinate synthase C9E88_002555 PF01202 Shikimate kinase C9E88_002560 PF07660 Secretin and TonB N terminus short domain C9E88_002560 PF03958 Bacterial type II/III secretion system short domain C9E88_002560 PF00263 Bacterial type II and III secretion system protein C9E88_002560 PF11741 AMIN domain C9E88_002585 PF17092 Penicillin-binding protein OB-like domain C9E88_002585 PF00912 Transglycosylase C9E88_002585 PF00905 Penicillin binding protein transpeptidase domain C9E88_002590 PF13847 Methyltransferase domain C9E88_002595 PF00953 Glycosyl transferase family 4 C9E88_002600 PF08245 Mur ligase middle domain C9E88_002600 PF02875 Mur ligase family, glutamate ligase domain C9E88_002600 PF01225 Mur ligase family, catalytic domain C9E88_002605 PF08245 Mur ligase middle domain C9E88_002605 PF02875 Mur ligase family, glutamate ligase domain C9E88_002605 PF01225 Mur ligase family, catalytic domain C9E88_002610 PF00905 Penicillin binding protein transpeptidase domain C9E88_002610 PF03717 Penicillin-binding Protein dimerisation domain C9E88_002620 PF01795 MraW methylase family C9E88_002640 PF00749 tRNA synthetases class I (E and Q), catalytic domain C9E88_002655 PF01545 Cation efflux family C9E88_002660 PF12848 ABC transporter C9E88_002660 PF00005 ABC transporter C9E88_002665 PF01053 Cys/Met metabolism PLP-dependent enzyme C9E88_002670 PF00106 short chain dehydrogenase C9E88_002675 PF01502 Phosphoribosyl-AMP cyclohydrolase C9E88_002690 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C9E88_002690 PF00361 Proton-conducting membrane transporter C9E88_002690 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter C9E88_002690 PF13244 Domain of unknown function (DUF4040) C9E88_002695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C9E88_002700 PF00361 Proton-conducting membrane transporter C9E88_002710 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) C9E88_002720 PF02033 Ribosome-binding factor A C9E88_002725 PF04760 Translation initiation factor IF-2, N-terminal region C9E88_002725 PF11987 Translation-initiation factor 2 C9E88_002725 PF08364 Bacterial translation initiation factor IF-2 associated region C9E88_002725 PF00009 Elongation factor Tu GTP binding domain C9E88_002730 PF00575 S1 RNA binding domain C9E88_002730 PF08529 NusA N-terminal domain C9E88_002730 PF13184 NusA-like KH domain C9E88_002735 PF02576 RimP N-terminal domain C9E88_002735 PF17384 RimP C-terminal SH3 domain C9E88_002760 PF03840 Preprotein translocase SecG subunit C9E88_002765 PF00121 Triosephosphate isomerase C9E88_002770 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C9E88_002770 PF00437 Type II/IV secretion system protein C9E88_002775 PF00482 Type II secretion system (T2SS), protein F C9E88_002780 PF01478 Type IV leader peptidase family C9E88_002780 PF06750 Bacterial Peptidase A24 N-terminal domain C9E88_002785 PF01121 Dephospho-CoA kinase C9E88_002795 PF08032 RNA 2'-O ribose methyltransferase substrate binding C9E88_002795 PF00588 SpoU rRNA Methylase family C9E88_002800 PF06865 Pyrimidine/purine nucleoside phosphorylase C9E88_002805 PF02463 RecF/RecN/SMC N terminal domain C9E88_002810 PF02622 Uncharacterized ACR, COG1678 C9E88_002815 PF03652 Holliday junction resolvase C9E88_002820 PF13533 Biotin-lipoyl like C9E88_002830 PF04632 Fusaric acid resistance protein family C9E88_002845 PF01895 PhoU domain C9E88_002860 PF13667 ThiC-associated domain C9E88_002860 PF01964 Radical SAM ThiC family C9E88_002865 PF00293 NUDIX domain C9E88_002870 PF00149 Calcineurin-like phosphoesterase C9E88_002875 PF01258 Prokaryotic dksA/traR C4-type zinc finger C9E88_002880 PF00749 tRNA synthetases class I (E and Q), catalytic domain C9E88_002885 PF01098 Cell cycle protein C9E88_002890 PF08245 Mur ligase middle domain C9E88_002890 PF02875 Mur ligase family, glutamate ligase domain C9E88_002900 PF07664 Ferrous iron transport protein B C terminus C9E88_002900 PF07670 Nucleoside recognition C9E88_002900 PF02421 Ferrous iron transport protein B C9E88_002910 PF02899 Phage integrase, N-terminal SAM-like domain C9E88_002910 PF00589 Phage integrase family C9E88_002915 PF10411 Disulfide bond isomerase protein N-terminus C9E88_002915 PF13098 Thioredoxin-like domain C9E88_002920 PF01842 ACT domain C9E88_002920 PF00742 Homoserine dehydrogenase C9E88_002920 PF03447 Homoserine dehydrogenase, NAD binding domain C9E88_002925 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_002930 PF00768 D-alanyl-D-alanine carboxypeptidase C9E88_002935 PF00072 Response regulator receiver domain C9E88_002935 PF00196 Bacterial regulatory proteins, luxR family C9E88_002940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_002940 PF00512 His Kinase A (phospho-acceptor) domain C9E88_002945 PF00072 Response regulator receiver domain C9E88_002945 PF02954 Bacterial regulatory protein, Fis family C9E88_002945 PF00158 Sigma-54 interaction domain C9E88_002950 PF03572 Peptidase family S41 C9E88_002950 PF01471 Putative peptidoglycan binding domain C9E88_002950 PF17820 PDZ domain C9E88_002955 PF01676 Metalloenzyme superfamily C9E88_002955 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C9E88_002960 PF03739 Lipopolysaccharide export system permease LptF/LptG C9E88_002965 PF03739 Lipopolysaccharide export system permease LptF/LptG C9E88_002970 PF02789 Cytosol aminopeptidase family, N-terminal domain C9E88_002970 PF00883 Cytosol aminopeptidase family, catalytic domain C9E88_002990 PF09335 SNARE associated Golgi protein C9E88_002995 PF00677 Lumazine binding domain C9E88_003005 PF01872 RibD C-terminal domain C9E88_003005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C9E88_003010 PF03477 ATP cone domain C9E88_003015 PF00909 Ammonium Transporter Family C9E88_003020 PF00543 Nitrogen regulatory protein P-II C9E88_003030 PF13335 Magnesium chelatase, subunit ChlI C-terminal C9E88_003030 PF01078 Magnesium chelatase, subunit ChlI C9E88_003045 PF03573 outer membrane porin, OprD family C9E88_003050 PF00719 Inorganic pyrophosphatase C9E88_003065 PF13193 AMP-binding enzyme C-terminal domain C9E88_003065 PF00501 AMP-binding enzyme C9E88_003070 PF00521 DNA gyrase/topoisomerase IV, subunit A C9E88_003070 PF03989 DNA gyrase C-terminal domain, beta-propeller C9E88_003075 PF07690 Major Facilitator Superfamily C9E88_003080 PF03458 UPF0126 domain C9E88_003085 PF02810 SEC-C motif C9E88_003090 PF03471 Transporter associated domain C9E88_003090 PF03741 Integral membrane protein TerC family C9E88_003095 PF03641 Possible lysine decarboxylase C9E88_003105 PF07690 Major Facilitator Superfamily C9E88_003115 PF00817 impB/mucB/samB family C9E88_003115 PF11799 impB/mucB/samB family C-terminal domain C9E88_003115 PF11798 IMS family HHH motif C9E88_003130 PF08497 Radical SAM N-terminal C9E88_003130 PF04055 Radical SAM superfamily C9E88_003130 PF11842 Domain of unknown function (DUF3362) C9E88_003135 PF01435 Peptidase family M48 C9E88_003165 PF00440 Bacterial regulatory proteins, tetR family C9E88_003165 PF08359 YsiA-like protein, C-terminal region C9E88_003190 PF01327 Polypeptide deformylase C9E88_003200 PF17782 DprA winged helix domain C9E88_003200 PF02481 DNA recombination-mediator protein A C9E88_003205 PF01300 Telomere recombination C9E88_003220 PF00255 Glutathione peroxidase C9E88_003235 PF05726 Pirin C-terminal cupin domain C9E88_003235 PF02678 Pirin C9E88_003245 PF01263 Aldose 1-epimerase C9E88_003260 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C9E88_003265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C9E88_003265 PF02874 ATP synthase alpha/beta family, beta-barrel domain C9E88_003270 PF00231 ATP synthase C9E88_003275 PF02874 ATP synthase alpha/beta family, beta-barrel domain C9E88_003275 PF00306 ATP synthase alpha/beta chain, C terminal domain C9E88_003275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C9E88_003280 PF00213 ATP synthase delta (OSCP) subunit C9E88_003285 PF00430 ATP synthase B/B' CF(0) C9E88_003290 PF00137 ATP synthase subunit C C9E88_003295 PF00119 ATP synthase A chain C9E88_003315 PF00005 ABC transporter C9E88_003320 PF00950 ABC 3 transport family C9E88_003325 PF05163 DinB family C9E88_003335 PF01810 LysE type translocator C9E88_003340 PF04261 Dyp-type peroxidase family C9E88_003375 PF04717 Type VI secretion system, phage-baseplate injector C9E88_003380 PF00155 Aminotransferase class I and II C9E88_003385 PF01554 MatE C9E88_003390 PF00296 Luciferase-like monooxygenase C9E88_003395 PF00005 ABC transporter C9E88_003400 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_003405 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_003430 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C9E88_003435 PF00106 short chain dehydrogenase C9E88_003445 PF00486 Transcriptional regulatory protein, C terminal C9E88_003445 PF00072 Response regulator receiver domain C9E88_003450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_003450 PF00512 His Kinase A (phospho-acceptor) domain C9E88_003450 PF00989 PAS fold C9E88_003450 PF11808 Phosphate regulon sensor protein PhoR C9E88_003465 PF02678 Pirin C9E88_003465 PF05726 Pirin C-terminal cupin domain C9E88_003470 PF00990 Diguanylate cyclase, GGDEF domain C9E88_003470 PF08448 PAS fold C9E88_003475 PF00145 C-5 cytosine-specific DNA methylase C9E88_003485 PF12102 Domain of unknown function (DUF3578) C9E88_003485 PF07728 AAA domain (dynein-related subfamily) C9E88_003490 PF00117 Glutamine amidotransferase class-I C9E88_003490 PF00958 GMP synthase C terminal domain C9E88_003490 PF02540 NAD synthase C9E88_003500 PF07681 DoxX C9E88_003505 PF09335 SNARE associated Golgi protein C9E88_003520 PF13614 AAA domain C9E88_003605 PF13737 Transposase DDE domain C9E88_003610 PF00465 Iron-containing alcohol dehydrogenase C9E88_003625 PF00171 Aldehyde dehydrogenase family C9E88_003630 PF01323 DSBA-like thioredoxin domain C9E88_003655 PF13657 HipA N-terminal domain C9E88_003655 PF07804 HipA-like C-terminal domain C9E88_003660 PF12419 SNF2 Helicase protein C9E88_003660 PF00271 Helicase conserved C-terminal domain C9E88_003660 PF00176 SNF2 family N-terminal domain C9E88_003675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C9E88_003675 PF02378 Phosphotransferase system, EIIC C9E88_003680 PF00294 pfkB family carbohydrate kinase C9E88_003685 PF02896 PEP-utilising enzyme, TIM barrel domain C9E88_003685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C9E88_003685 PF00391 PEP-utilising enzyme, mobile domain C9E88_003685 PF05524 PEP-utilising enzyme, N-terminal C9E88_003685 PF00381 PTS HPr component phosphorylation site C9E88_003695 PF06100 MCRA family C9E88_003720 PF00171 Aldehyde dehydrogenase family C9E88_003725 PF01323 DSBA-like thioredoxin domain C9E88_003735 PF00440 Bacterial regulatory proteins, tetR family C9E88_003740 PF00925 GTP cyclohydrolase II C9E88_003740 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C9E88_003745 PF00885 6,7-dimethyl-8-ribityllumazine synthase C9E88_003750 PF01029 NusB family C9E88_003755 PF00586 AIR synthase related protein, N-terminal domain C9E88_003755 PF02769 AIR synthase related protein, C-terminal domain C9E88_003760 PF04608 Phosphatidylglycerophosphatase A C9E88_003765 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_003765 PF12804 MobA-like NTP transferase domain C9E88_003765 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_003770 PF01380 SIS domain C9E88_003775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C9E88_003775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C9E88_003775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C9E88_003775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C9E88_003780 PF16363 GDP-mannose 4,6 dehydratase C9E88_003785 PF00342 Phosphoglucose isomerase C9E88_003790 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C9E88_003790 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C9E88_003790 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C9E88_003795 PF00483 Nucleotidyl transferase C9E88_003800 PF02397 Bacterial sugar transferase C9E88_003805 PF01050 Mannose-6-phosphate isomerase C9E88_003805 PF00483 Nucleotidyl transferase C9E88_003810 PF00534 Glycosyl transferases group 1 C9E88_003810 PF13579 Glycosyl transferase 4-like domain C9E88_003815 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_003820 PF00534 Glycosyl transferases group 1 C9E88_003820 PF13439 Glycosyltransferase Family 4 C9E88_003840 PF00293 NUDIX domain C9E88_003845 PF01370 NAD dependent epimerase/dehydratase family C9E88_003850 PF16363 GDP-mannose 4,6 dehydratase C9E88_003855 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C9E88_003855 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C9E88_003855 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C9E88_003860 PF02719 Polysaccharide biosynthesis protein C9E88_003865 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C9E88_003870 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_003870 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_003870 PF17836 PglD N-terminal domain C9E88_003875 PF02397 Bacterial sugar transferase C9E88_003880 PF13477 Glycosyl transferase 4-like C9E88_003880 PF00534 Glycosyl transferases group 1 C9E88_003885 PF00534 Glycosyl transferases group 1 C9E88_003885 PF13439 Glycosyltransferase Family 4 C9E88_003890 PF00534 Glycosyl transferases group 1 C9E88_003890 PF13439 Glycosyltransferase Family 4 C9E88_003895 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_003900 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_003900 PF12464 Maltose acetyltransferase C9E88_003910 PF01370 NAD dependent epimerase/dehydratase family C9E88_003915 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C9E88_003915 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C9E88_003915 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C9E88_003920 PF02563 Polysaccharide biosynthesis/export protein C9E88_003920 PF18412 Outer-membrane lipoprotein Wza C-terminal domain C9E88_003920 PF10531 SLBB domain C9E88_003925 PF01451 Low molecular weight phosphotyrosine protein phosphatase C9E88_003930 PF13807 G-rich domain on putative tyrosine kinase C9E88_003930 PF13614 AAA domain C9E88_003930 PF02706 Chain length determinant protein C9E88_003935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_003935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C9E88_003940 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C9E88_003940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_003955 PF14815 NUDIX domain C9E88_003955 PF00730 HhH-GPD superfamily base excision DNA repair protein C9E88_003955 PF10576 Iron-sulfur binding domain of endonuclease III C9E88_003955 PF00633 Helix-hairpin-helix motif C9E88_003960 PF01551 Peptidase family M23 C9E88_003970 PF03352 Methyladenine glycosylase C9E88_003975 PF08240 Alcohol dehydrogenase GroES-like domain C9E88_003975 PF00107 Zinc-binding dehydrogenase C9E88_003995 PF05173 Dihydrodipicolinate reductase, C-terminus C9E88_003995 PF01113 Dihydrodipicolinate reductase, N-terminus C9E88_004000 PF15864 Protein glycosylation ligase C9E88_004000 PF04932 O-Antigen ligase C9E88_004000 PF11846 Virulence factor membrane-bound polymerase, C-terminal C9E88_004005 PF00226 DnaJ domain C9E88_004005 PF00684 DnaJ central domain C9E88_004005 PF01556 DnaJ C terminal domain C9E88_004015 PF00873 AcrB/AcrD/AcrF family C9E88_004020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_004025 PF00440 Bacterial regulatory proteins, tetR family C9E88_004025 PF16859 Tetracyclin repressor-like, C-terminal domain C9E88_004030 PF00311 Phosphoenolpyruvate carboxylase C9E88_004050 PF00563 EAL domain C9E88_004050 PF00990 Diguanylate cyclase, GGDEF domain C9E88_004050 PF03707 Bacterial signalling protein N terminal repeat C9E88_004065 PF00920 Dehydratase family C9E88_004075 PF03895 YadA-like membrane anchor domain C9E88_004075 PF05658 Head domain of trimeric autotransporter adhesin C9E88_004075 PF05658 Head domain of trimeric autotransporter adhesin C9E88_004075 PF05662 Coiled stalk of trimeric autotransporter adhesin C9E88_004075 PF13018 Extended Signal Peptide of Type V secretion system C9E88_004075 PF03895 YadA-like membrane anchor domain C9E88_004075 PF13018 Extended Signal Peptide of Type V secretion system C9E88_004075 PF05662 Coiled stalk of trimeric autotransporter adhesin C9E88_004095 PF02911 Formyl transferase, C-terminal domain C9E88_004095 PF00551 Formyl transferase C9E88_004100 PF01189 16S rRNA methyltransferase RsmB/F C9E88_004100 PF01029 NusB family C9E88_004105 PF00691 OmpA family C9E88_004145 PF13613 Helix-turn-helix of DDE superfamily endonuclease C9E88_004145 PF13359 DDE superfamily endonuclease C9E88_004155 PF00209 Sodium:neurotransmitter symporter family C9E88_004185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C9E88_004195 PF07859 alpha/beta hydrolase fold C9E88_004210 PF01025 GrpE C9E88_004215 PF00012 Hsp70 protein C9E88_004230 PF01521 Iron-sulphur cluster biosynthesis C9E88_004250 PF12848 ABC transporter C9E88_004250 PF00005 ABC transporter C9E88_004260 PF18053 DNA gyrase B subunit insert domain C9E88_004260 PF00986 DNA gyrase B subunit, carboxyl terminus C9E88_004260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_004260 PF00204 DNA gyrase B C9E88_004260 PF01751 Toprim domain C9E88_004265 PF02463 RecF/RecN/SMC N terminal domain C9E88_004270 PF02768 DNA polymerase III beta subunit, C-terminal domain C9E88_004270 PF02767 DNA polymerase III beta subunit, central domain C9E88_004270 PF00712 DNA polymerase III beta subunit, N-terminal domain C9E88_004275 PF08299 Bacterial dnaA protein helix-turn-helix C9E88_004275 PF00308 Bacterial dnaA protein C9E88_004275 PF11638 DnaA N-terminal domain C9E88_004280 PF00468 Ribosomal protein L34 C9E88_004285 PF00825 Ribonuclease P C9E88_004290 PF01809 Putative membrane protein insertion efficiency factor C9E88_004295 PF14849 YidC periplasmic domain C9E88_004295 PF02096 60Kd inner membrane protein C9E88_004300 PF10396 GTP-binding protein TrmE N-terminus C9E88_004300 PF01926 50S ribosome-binding GTPase C9E88_004300 PF12631 MnmE helical domain C9E88_004310 PF02583 Metal-sensitive transcriptional repressor C9E88_004325 PF00156 Phosphoribosyl transferase domain C9E88_004330 PF01979 Amidohydrolase family C9E88_004335 PF03741 Integral membrane protein TerC family C9E88_004340 PF07690 Major Facilitator Superfamily C9E88_004365 PF02875 Mur ligase family, glutamate ligase domain C9E88_004365 PF08245 Mur ligase middle domain C9E88_004365 PF01225 Mur ligase family, catalytic domain C9E88_004375 PF00731 AIR carboxylase C9E88_004380 PF02222 ATP-grasp domain C9E88_004380 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C9E88_004385 PF13406 Transglycosylase SLT domain C9E88_004390 PF03702 Anhydro-N-acetylmuramic acid kinase C9E88_004395 PF00579 tRNA synthetases class I (W and Y) C9E88_004435 PF07690 Major Facilitator Superfamily C9E88_004440 PF07690 Major Facilitator Superfamily C9E88_004470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_004475 PF01252 Signal peptidase (SPase) II C9E88_004480 PF00133 tRNA synthetases class I (I, L, M and V) C9E88_004480 PF06827 Zinc finger found in FPG and IleRS C9E88_004480 PF08264 Anticodon-binding domain of tRNA C9E88_004485 PF01687 Riboflavin kinase C9E88_004485 PF06574 FAD synthetase C9E88_004505 PF08362 YcdC-like protein, C-terminal region C9E88_004505 PF00440 Bacterial regulatory proteins, tetR family C9E88_004510 PF00005 ABC transporter C9E88_004515 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_004520 PF00296 Luciferase-like monooxygenase C9E88_004525 PF09084 NMT1/THI5 like C9E88_004530 PF00583 Acetyltransferase (GNAT) family C9E88_004530 PF00696 Amino acid kinase family C9E88_004550 PF00106 short chain dehydrogenase C9E88_004555 PF13419 Haloacid dehalogenase-like hydrolase C9E88_004565 PF01323 DSBA-like thioredoxin domain C9E88_004570 PF00440 Bacterial regulatory proteins, tetR family C9E88_004575 PF03725 3' exoribonuclease family, domain 2 C9E88_004575 PF01138 3' exoribonuclease family, domain 1 C9E88_004580 PF05506 Domain of unknown function (DUF756) C9E88_004580 PF04185 Phosphoesterase family C9E88_004585 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C9E88_004585 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C9E88_004590 PF01510 N-acetylmuramoyl-L-alanine amidase C9E88_004595 PF03023 Lipid II flippase MurJ C9E88_004600 PF07043 Protein of unknown function (DUF1328) C9E88_004605 PF03692 Putative zinc- or iron-chelating domain C9E88_004615 PF00563 EAL domain C9E88_004615 PF00990 Diguanylate cyclase, GGDEF domain C9E88_004615 PF03707 Bacterial signalling protein N terminal repeat C9E88_004620 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_004620 PF16193 AAA C-terminal domain C9E88_004620 PF12002 MgsA AAA+ ATPase C terminal C9E88_004625 PF01259 SAICAR synthetase C9E88_004635 PF00701 Dihydrodipicolinate synthetase family C9E88_004640 PF07690 Major Facilitator Superfamily C9E88_004650 PF00857 Isochorismatase family C9E88_004655 PF01758 Sodium Bile acid symporter family C9E88_004680 PF02580 D-Tyr-tRNA(Tyr) deacylase C9E88_004685 PF00199 Catalase C9E88_004685 PF06628 Catalase-related immune-responsive C9E88_004695 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C9E88_004695 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C9E88_004700 PF00581 Rhodanese-like domain C9E88_004705 PF02666 Phosphatidylserine decarboxylase C9E88_004715 PF03485 Arginyl tRNA synthetase N terminal domain C9E88_004715 PF05746 DALR anticodon binding domain C9E88_004715 PF00750 tRNA synthetases class I (R) C9E88_004725 PF04286 Protein of unknown function (DUF445) C9E88_004740 PF04262 Glutamate-cysteine ligase C9E88_004745 PF02600 Disulfide bond formation protein DsbB C9E88_004755 PF05728 Uncharacterised protein family (UPF0227) C9E88_004760 PF01751 Toprim domain C9E88_004760 PF00986 DNA gyrase B subunit, carboxyl terminus C9E88_004760 PF00204 DNA gyrase B C9E88_004760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_004770 PF02653 Branched-chain amino acid transport system / permease component C9E88_004780 PF00005 ABC transporter C9E88_004780 PF12399 Branched-chain amino acid ATP-binding cassette transporter C9E88_004785 PF00005 ABC transporter C9E88_004795 PF00583 Acetyltransferase (GNAT) family C9E88_004820 PF02683 Cytochrome C biogenesis protein transmembrane region C9E88_004820 PF11412 Disulphide bond corrector protein DsbC C9E88_004830 PF00990 Diguanylate cyclase, GGDEF domain C9E88_004830 PF17151 Periplasmic sensor domain C9E88_004835 PF02525 Flavodoxin-like fold C9E88_004840 PF07859 alpha/beta hydrolase fold C9E88_004855 PF03372 Endonuclease/Exonuclease/phosphatase family C9E88_004860 PF00156 Phosphoribosyl transferase domain C9E88_004870 PF00313 'Cold-shock' DNA-binding domain C9E88_004875 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C9E88_004875 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C9E88_004880 PF03033 Glycosyltransferase family 28 N-terminal domain C9E88_004880 PF04101 Glycosyltransferase family 28 C-terminal domain C9E88_004885 PF02875 Mur ligase family, glutamate ligase domain C9E88_004885 PF08245 Mur ligase middle domain C9E88_004885 PF01225 Mur ligase family, catalytic domain C9E88_004890 PF01820 D-ala D-ala ligase N-terminus C9E88_004890 PF07478 D-ala D-ala ligase C-terminus C9E88_004895 PF03799 Cell division protein FtsQ C9E88_004895 PF08478 POTRA domain, FtsQ-type C9E88_004900 PF02491 SHS2 domain inserted in FTSA C9E88_004905 PF12327 FtsZ family, C-terminal domain C9E88_004905 PF00091 Tubulin/FtsZ family, GTPase domain C9E88_004910 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C9E88_004925 PF00456 Transketolase, thiamine diphosphate binding domain C9E88_004925 PF17831 Pyruvate dehydrogenase E1 component middle domain C9E88_004930 PF02817 e3 binding domain C9E88_004930 PF00364 Biotin-requiring enzyme C9E88_004930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C9E88_004935 PF01169 Uncharacterized protein family UPF0016 C9E88_004945 PF03692 Putative zinc- or iron-chelating domain C9E88_004950 PF00571 CBS domain C9E88_004950 PF00478 IMP dehydrogenase / GMP reductase domain C9E88_004955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C9E88_004955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C9E88_004955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C9E88_004955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C9E88_004960 PF01243 Pyridoxamine 5'-phosphate oxidase C9E88_004960 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C9E88_004965 PF02272 DHHA1 domain C9E88_004965 PF01368 DHH family C9E88_004965 PF17768 RecJ OB domain C9E88_004990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_004995 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C9E88_005000 PF04452 RNA methyltransferase C9E88_005005 PF00924 Mechanosensitive ion channel C9E88_005015 PF16177 Acetyl-coenzyme A synthetase N-terminus C9E88_005015 PF00501 AMP-binding enzyme C9E88_005015 PF13193 AMP-binding enzyme C-terminal domain C9E88_005020 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C9E88_005020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_005025 PF00677 Lumazine binding domain C9E88_005035 PF00296 Luciferase-like monooxygenase C9E88_005040 PF03358 NADPH-dependent FMN reductase C9E88_005045 PF00196 Bacterial regulatory proteins, luxR family C9E88_005045 PF00072 Response regulator receiver domain C9E88_005055 PF00072 Response regulator receiver domain C9E88_005055 PF00512 His Kinase A (phospho-acceptor) domain C9E88_005055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_005055 PF09456 RcsC Alpha-Beta-Loop (ABL) C9E88_005060 PF04341 Protein of unknown function, DUF485 C9E88_005065 PF00474 Sodium:solute symporter family C9E88_005085 PF00072 Response regulator receiver domain C9E88_005085 PF00990 Diguanylate cyclase, GGDEF domain C9E88_005095 PF17760 UvrA interaction domain C9E88_005095 PF17755 UvrA DNA-binding domain C9E88_005110 PF06942 GlpM protein C9E88_005115 PF03070 TENA/THI-4/PQQC family C9E88_005125 PF07690 Major Facilitator Superfamily C9E88_005130 PF00436 Single-strand binding protein family C9E88_005140 PF17754 MftR C-terminal domain C9E88_005140 PF00440 Bacterial regulatory proteins, tetR family C9E88_005145 PF00578 AhpC/TSA family C9E88_005145 PF10417 C-terminal domain of 1-Cys peroxiredoxin C9E88_005155 PF00857 Isochorismatase family C9E88_005160 PF05726 Pirin C-terminal cupin domain C9E88_005160 PF02678 Pirin C9E88_005165 PF01593 Flavin containing amine oxidoreductase C9E88_005190 PF02705 K+ potassium transporter C9E88_005215 PF12833 Helix-turn-helix domain C9E88_005215 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C9E88_005230 PF00977 Histidine biosynthesis protein C9E88_005235 PF01636 Phosphotransferase enzyme family C9E88_005255 PF00324 Amino acid permease C9E88_005260 PF01266 FAD dependent oxidoreductase C9E88_005265 PF00892 EamA-like transporter family C9E88_005270 PF00977 Histidine biosynthesis protein C9E88_005285 PF00117 Glutamine amidotransferase class-I C9E88_005290 PF00475 Imidazoleglycerol-phosphate dehydratase C9E88_005350 PF00108 Thiolase, N-terminal domain C9E88_005350 PF02803 Thiolase, C-terminal domain C9E88_005355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C9E88_005355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C9E88_005355 PF00378 Enoyl-CoA hydratase/isomerase C9E88_005365 PF07724 AAA domain (Cdc48 subfamily) C9E88_005365 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_005375 PF02151 UvrB/uvrC motif C9E88_005375 PF01541 GIY-YIG catalytic domain C9E88_005375 PF08459 UvrC Helix-hairpin-helix N-terminal C9E88_005385 PF01066 CDP-alcohol phosphatidyltransferase C9E88_005390 PF04362 Bacterial Fe(2+) trafficking C9E88_005395 PF00206 Lyase C9E88_005395 PF14698 Argininosuccinate lyase C-terminal C9E88_005400 PF06580 Histidine kinase C9E88_005400 PF07694 5TMR of 5TMR-LYT C9E88_005400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_005405 PF00072 Response regulator receiver domain C9E88_005405 PF04397 LytTr DNA-binding domain C9E88_005410 PF03900 Porphobilinogen deaminase, C-terminal domain C9E88_005410 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C9E88_005435 PF00816 H-NS histone family C9E88_005450 PF00263 Bacterial type II and III secretion system protein C9E88_005450 PF03958 Bacterial type II/III secretion system short domain C9E88_005455 PF16697 Inner membrane component of T3SS, cytoplasmic domain C9E88_005460 PF13419 Haloacid dehalogenase-like hydrolase C9E88_005465 PF04715 Anthranilate synthase component I, N terminal region C9E88_005465 PF00425 chorismate binding enzyme C9E88_005490 PF00009 Elongation factor Tu GTP binding domain C9E88_005490 PF03144 Elongation factor Tu domain 2 C9E88_005490 PF03143 Elongation factor Tu C-terminal domain C9E88_005500 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C9E88_005505 PF00467 KOW motif C9E88_005505 PF02357 Transcription termination factor nusG C9E88_005510 PF00298 Ribosomal protein L11, RNA binding domain C9E88_005510 PF03946 Ribosomal protein L11, N-terminal domain C9E88_005515 PF00687 Ribosomal protein L1p/L10e family C9E88_005520 PF00466 Ribosomal protein L10 C9E88_005525 PF00542 Ribosomal protein L7/L12 C-terminal domain C9E88_005525 PF16320 Ribosomal protein L7/L12 dimerisation domain C9E88_005530 PF10385 RNA polymerase beta subunit external 1 domain C9E88_005530 PF00562 RNA polymerase Rpb2, domain 6 C9E88_005530 PF04560 RNA polymerase Rpb2, domain 7 C9E88_005530 PF04561 RNA polymerase Rpb2, domain 2 C9E88_005530 PF04563 RNA polymerase beta subunit C9E88_005530 PF04565 RNA polymerase Rpb2, domain 3 C9E88_005535 PF04997 RNA polymerase Rpb1, domain 1 C9E88_005535 PF00623 RNA polymerase Rpb1, domain 2 C9E88_005535 PF04983 RNA polymerase Rpb1, domain 3 C9E88_005535 PF04998 RNA polymerase Rpb1, domain 5 C9E88_005535 PF05000 RNA polymerase Rpb1, domain 4 C9E88_005555 PF00561 alpha/beta hydrolase fold C9E88_005560 PF03553 Na+/H+ antiporter family C9E88_005560 PF13726 Na+-H+ antiporter family C9E88_005565 PF03922 OmpW family C9E88_005575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_005575 PF00183 Hsp90 protein C9E88_005600 PF01323 DSBA-like thioredoxin domain C9E88_005610 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C9E88_005610 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C9E88_005615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_005615 PF00512 His Kinase A (phospho-acceptor) domain C9E88_005615 PF00672 HAMP domain C9E88_005620 PF00072 Response regulator receiver domain C9E88_005620 PF00486 Transcriptional regulatory protein, C terminal C9E88_005625 PF17674 HHH domain C9E88_005625 PF16921 Tex protein YqgF-like domain C9E88_005625 PF09371 Tex-like protein N-terminal domain C9E88_005625 PF00575 S1 RNA binding domain C9E88_005650 PF03109 ABC1 family C9E88_005660 PF01209 ubiE/COQ5 methyltransferase family C9E88_005670 PF03976 Polyphosphate kinase 2 (PPK2) C9E88_005680 PF17946 RecC C-terminal domain C9E88_005685 PF13361 UvrD-like helicase C-terminal domain C9E88_005685 PF00580 UvrD/REP helicase N-terminal domain C9E88_005685 PF12705 PD-(D/E)XK nuclease superfamily C9E88_005690 PF13538 UvrD-like helicase C-terminal domain C9E88_005695 PF00312 Ribosomal protein S15 C9E88_005700 PF03725 3' exoribonuclease family, domain 2 C9E88_005700 PF01138 3' exoribonuclease family, domain 1 C9E88_005700 PF00575 S1 RNA binding domain C9E88_005700 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C9E88_005700 PF00013 KH domain C9E88_005705 PF01544 CorA-like Mg2+ transporter protein C9E88_005715 PF04325 Protein of unknown function (DUF465) C9E88_005725 PF01556 DnaJ C terminal domain C9E88_005725 PF00226 DnaJ domain C9E88_005745 PF01430 Hsp33 protein C9E88_005750 PF00999 Sodium/hydrogen exchanger family C9E88_005750 PF02254 TrkA-N domain C9E88_005755 PF17764 3′ DNA-binding domain (3′BD) C9E88_005755 PF18074 Primosomal protein N C-terminal domain C9E88_005755 PF00271 Helicase conserved C-terminal domain C9E88_005755 PF00270 DEAD/DEAH box helicase C9E88_005755 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C9E88_005760 PF00482 Type II secretion system (T2SS), protein F C9E88_005765 PF07963 Prokaryotic N-terminal methylation motif C9E88_005765 PF08334 Type II secretion system (T2SS), protein G C9E88_005770 PF13737 Transposase DDE domain C9E88_005780 PF08264 Anticodon-binding domain of tRNA C9E88_005780 PF01588 Putative tRNA binding domain C9E88_005780 PF09334 tRNA synthetases class I (M) C9E88_005785 PF00795 Carbon-nitrogen hydrolase C9E88_005790 PF03471 Transporter associated domain C9E88_005790 PF00571 CBS domain C9E88_005795 PF01206 Sulfurtransferase TusA C9E88_005800 PF04717 Type VI secretion system, phage-baseplate injector C9E88_005825 PF01177 Asp/Glu/Hydantoin racemase C9E88_005835 PF00762 Ferrochelatase C9E88_005840 PF00753 Metallo-beta-lactamase superfamily C9E88_005850 PF03884 DNA gyrase inhibitor YacG C9E88_005860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C9E88_005860 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_005885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_005885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_005920 PF05746 DALR anticodon binding domain C9E88_005920 PF02092 Glycyl-tRNA synthetase beta subunit C9E88_005925 PF02091 Glycyl-tRNA synthetase alpha subunit C9E88_005945 PF00571 CBS domain C9E88_005950 PF04024 PspC domain C9E88_005980 PF00501 AMP-binding enzyme C9E88_005980 PF13193 AMP-binding enzyme C-terminal domain C9E88_005985 PF00575 S1 RNA binding domain C9E88_005985 PF12111 Polyribonucleotide phosphorylase C terminal C9E88_005985 PF10150 Ribonuclease E/G family C9E88_005995 PF01479 S4 domain C9E88_005995 PF00849 RNA pseudouridylate synthase C9E88_006005 PF01557 Fumarylacetoacetate (FAA) hydrolase family C9E88_006010 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation C9E88_006010 PF01118 Semialdehyde dehydrogenase, NAD binding domain C9E88_006015 PF07836 DmpG-like communication domain C9E88_006015 PF00682 HMGL-like C9E88_006020 PF03573 outer membrane porin, OprD family C9E88_006025 PF00561 alpha/beta hydrolase fold C9E88_006030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_006030 PF03466 LysR substrate binding domain C9E88_006035 PF00355 Rieske [2Fe-2S] domain C9E88_006035 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C9E88_006040 PF00866 Ring hydroxylating beta subunit C9E88_006045 PF00355 Rieske [2Fe-2S] domain C9E88_006050 PF00106 short chain dehydrogenase C9E88_006055 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C9E88_006060 PF14759 Reductase C-terminal C9E88_006060 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_006075 PF12706 Beta-lactamase superfamily domain C9E88_006090 PF00141 Peroxidase C9E88_006105 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_006105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_006105 PF18158 Adaptive response protein AidB N-terminal domain C9E88_006110 PF01037 Lrp/AsnC ligand binding domain C9E88_006125 PF12833 Helix-turn-helix domain C9E88_006125 PF01965 DJ-1/PfpI family C9E88_006135 PF01590 GAF domain C9E88_006135 PF05524 PEP-utilising enzyme, N-terminal C9E88_006135 PF00391 PEP-utilising enzyme, mobile domain C9E88_006135 PF02896 PEP-utilising enzyme, TIM barrel domain C9E88_006140 PF00293 NUDIX domain C9E88_006165 PF03466 LysR substrate binding domain C9E88_006165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_006175 PF00330 Aconitase family (aconitate hydratase) C9E88_006180 PF00694 Aconitase C-terminal domain C9E88_006190 PF00180 Isocitrate/isopropylmalate dehydrogenase C9E88_006205 PF01176 Translation initiation factor 1A / IF-1 C9E88_006215 PF01416 tRNA pseudouridine synthase C9E88_006235 PF01118 Semialdehyde dehydrogenase, NAD binding domain C9E88_006235 PF02774 Semialdehyde dehydrogenase, dimerisation domain C9E88_006255 PF03279 Bacterial lipid A biosynthesis acyltransferase C9E88_006290 PF01131 DNA topoisomerase C9E88_006290 PF08272 Topoisomerase I zinc-ribbon-like C9E88_006290 PF01751 Toprim domain C9E88_006290 PF01396 Topoisomerase DNA binding C4 zinc finger C9E88_006315 PF02595 Glycerate kinase family C9E88_006320 PF13737 Transposase DDE domain C9E88_006330 PF00580 UvrD/REP helicase N-terminal domain C9E88_006330 PF13361 UvrD-like helicase C-terminal domain C9E88_006335 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C9E88_006360 PF02254 TrkA-N domain C9E88_006360 PF00999 Sodium/hydrogen exchanger family C9E88_006365 PF00471 Ribosomal protein L33 C9E88_006370 PF00830 Ribosomal L28 family C9E88_006375 PF00171 Aldehyde dehydrogenase family C9E88_006385 PF01842 ACT domain C9E88_006385 PF00551 Formyl transferase C9E88_006395 PF01618 MotA/TolQ/ExbB proton channel family C9E88_006405 PF01625 Peptide methionine sulfoxide reductase C9E88_006420 PF00186 Dihydrofolate reductase C9E88_006425 PF00303 Thymidylate synthase C9E88_006450 PF01790 Prolipoprotein diacylglyceryl transferase C9E88_006465 PF00902 Sec-independent protein translocase protein (TatC) C9E88_006470 PF02416 mttA/Hcf106 family C9E88_006475 PF02416 mttA/Hcf106 family C9E88_006485 PF01725 Ham1 family C9E88_006500 PF00561 alpha/beta hydrolase fold C9E88_006500 PF07021 Methionine biosynthesis protein MetW C9E88_006505 PF00561 alpha/beta hydrolase fold C9E88_006510 PF08502 LeuA allosteric (dimerisation) domain C9E88_006510 PF00682 HMGL-like C9E88_006515 PF01070 FMN-dependent dehydrogenase C9E88_006520 PF13640 2OG-Fe(II) oxygenase superfamily C9E88_006520 PF18331 PKHD-type hydroxylase C-terminal domain C9E88_006525 PF07715 TonB-dependent Receptor Plug Domain C9E88_006525 PF00593 TonB dependent receptor C9E88_006530 PF00593 TonB dependent receptor C9E88_006530 PF07715 TonB-dependent Receptor Plug Domain C9E88_006535 PF00593 TonB dependent receptor C9E88_006535 PF07715 TonB-dependent Receptor Plug Domain C9E88_006540 PF05697 Bacterial trigger factor protein (TF) C9E88_006540 PF05698 Bacterial trigger factor protein (TF) C-terminus C9E88_006540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_006545 PF00574 Clp protease C9E88_006550 PF07724 AAA domain (Cdc48 subfamily) C9E88_006550 PF06689 ClpX C4-type zinc finger C9E88_006550 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_006565 PF05681 Fumarate hydratase (Fumerase) C9E88_006565 PF05683 Fumarase C-terminus C9E88_006590 PF01515 Phosphate acetyl/butaryl transferase C9E88_006590 PF07085 DRTGG domain C9E88_006595 PF00871 Acetokinase family C9E88_006600 PF00171 Aldehyde dehydrogenase family C9E88_006615 PF00933 Glycosyl hydrolase family 3 N terminal domain C9E88_006620 PF17804 Tail specific protease N-terminal domain C9E88_006620 PF11818 C-terminal domain of tail specific protease (DUF3340) C9E88_006620 PF00595 PDZ domain C9E88_006620 PF03572 Peptidase family S41 C9E88_006625 PF03707 Bacterial signalling protein N terminal repeat C9E88_006625 PF00990 Diguanylate cyclase, GGDEF domain C9E88_006625 PF00563 EAL domain C9E88_006630 PF01425 Amidase C9E88_006635 PF00364 Biotin-requiring enzyme C9E88_006635 PF00289 Biotin carboxylase, N-terminal domain C9E88_006635 PF02785 Biotin carboxylase C-terminal domain C9E88_006635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_006640 PF07729 FCD domain C9E88_006640 PF00392 Bacterial regulatory proteins, gntR family C9E88_006645 PF03144 Elongation factor Tu domain 2 C9E88_006645 PF00009 Elongation factor Tu GTP binding domain C9E88_006645 PF16658 Class II release factor RF3, C-terminal domain C9E88_006660 PF01026 TatD related DNase C9E88_006670 PF02556 Preprotein translocase subunit SecB C9E88_006675 PF00462 Glutaredoxin C9E88_006685 PF03193 RsgA GTPase C9E88_006690 PF00929 Exonuclease C9E88_006700 PF00899 ThiF family C9E88_006705 PF04717 Type VI secretion system, phage-baseplate injector C9E88_006735 PF02321 Outer membrane efflux protein C9E88_006735 PF08139 Prokaryotic membrane lipoprotein lipid attachment site C9E88_006740 PF00005 ABC transporter C9E88_006740 PF02687 FtsX-like permease family C9E88_006740 PF12704 MacB-like periplasmic core domain C9E88_006745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_006760 PF09334 tRNA synthetases class I (M) C9E88_006760 PF13603 Leucyl-tRNA synthetase, Domain 2 C9E88_006760 PF00133 tRNA synthetases class I (I, L, M and V) C9E88_006760 PF08264 Anticodon-binding domain of tRNA C9E88_006770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C9E88_006770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C9E88_006770 PF00205 Thiamine pyrophosphate enzyme, central domain C9E88_006775 PF10369 Small subunit of acetolactate synthase C9E88_006780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C9E88_006780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C9E88_006805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_006805 PF13492 GAF domain C9E88_006805 PF07730 Histidine kinase C9E88_006810 PF13439 Glycosyltransferase Family 4 C9E88_006810 PF00534 Glycosyl transferases group 1 C9E88_006815 PF01569 PAP2 superfamily C9E88_006820 PF04384 Iron-sulphur cluster assembly C9E88_006825 PF00334 Nucleoside diphosphate kinase C9E88_006830 PF04055 Radical SAM superfamily C9E88_006840 PF13464 Domain of unknown function (DUF4115) C9E88_006845 PF04551 GcpE protein C9E88_006850 PF03129 Anticodon binding domain C9E88_006850 PF13393 Histidyl-tRNA synthetase C9E88_006860 PF13360 PQQ-like domain C9E88_006865 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C9E88_006865 PF01926 50S ribosome-binding GTPase C9E88_006875 PF00106 short chain dehydrogenase C9E88_006880 PF03819 MazG nucleotide pyrophosphohydrolase domain C9E88_006885 PF10531 SLBB domain C9E88_006890 PF12627 Probable RNA and SrmB- binding site of polymerase A C9E88_006890 PF12626 Polymerase A arginine-rich C-terminus C9E88_006890 PF01743 Poly A polymerase head domain C9E88_006895 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C9E88_006900 PF02548 Ketopantoate hydroxymethyltransferase C9E88_006905 PF02569 Pantoate-beta-alanine ligase C9E88_006910 PF03668 P-loop ATPase protein family C9E88_006915 PF00381 PTS HPr component phosphorylation site C9E88_006920 PF04751 Protein of unknown function (DUF615) C9E88_006925 PF13193 AMP-binding enzyme C-terminal domain C9E88_006925 PF00501 AMP-binding enzyme C9E88_006930 PF04030 D-arabinono-1,4-lactone oxidase C9E88_006930 PF01565 FAD binding domain C9E88_006955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C9E88_006955 PF03129 Anticodon binding domain C9E88_006955 PF02824 TGS domain C9E88_006955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C9E88_006960 PF05198 Translation initiation factor IF-3, N-terminal domain C9E88_006960 PF00707 Translation initiation factor IF-3, C-terminal domain C9E88_006965 PF02798 Glutathione S-transferase, N-terminal domain C9E88_006965 PF00043 Glutathione S-transferase, C-terminal domain C9E88_006975 PF09335 SNARE associated Golgi protein C9E88_006985 PF07690 Major Facilitator Superfamily C9E88_006990 PF01632 Ribosomal protein L35 C9E88_006995 PF00453 Ribosomal protein L20 C9E88_007030 PF01409 tRNA synthetases class II core domain (F) C9E88_007030 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C9E88_007035 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C9E88_007035 PF01588 Putative tRNA binding domain C9E88_007035 PF03147 Ferredoxin-fold anticodon binding domain C9E88_007035 PF03484 tRNA synthetase B5 domain C9E88_007035 PF03483 B3/4 domain C9E88_007040 PF00216 Bacterial DNA-binding protein C9E88_007050 PF07498 Rho termination factor, N-terminal domain C9E88_007050 PF07497 Rho termination factor, RNA-binding domain C9E88_007050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C9E88_007055 PF00085 Thioredoxin C9E88_007060 PF02541 Ppx/GppA phosphatase family C9E88_007065 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C9E88_007070 PF01171 PP-loop family C9E88_007070 PF09179 TilS substrate binding domain C9E88_007070 PF11734 TilS substrate C-terminal domain C9E88_007075 PF03807 NADP oxidoreductase coenzyme F420-dependent C9E88_007075 PF14748 Pyrroline-5-carboxylate reductase dimerisation C9E88_007080 PF02325 YGGT family C9E88_007085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C9E88_007085 PF01367 5'-3' exonuclease, C-terminal SAM fold C9E88_007085 PF00476 DNA polymerase family A C9E88_007085 PF01612 3'-5' exonuclease C9E88_007105 PF00437 Type II/IV secretion system protein C9E88_007115 PF02566 OsmC-like protein C9E88_007125 PF00795 Carbon-nitrogen hydrolase C9E88_007175 PF00309 Sigma-54 factor, Activator interacting domain (AID) C9E88_007175 PF04963 Sigma-54 factor, core binding domain C9E88_007175 PF04552 Sigma-54, DNA binding domain C9E88_007180 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C9E88_007185 PF01722 BolA-like protein C9E88_007190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C9E88_007195 PF01634 ATP phosphoribosyltransferase C9E88_007200 PF00815 Histidinol dehydrogenase C9E88_007205 PF00155 Aminotransferase class I and II C9E88_007210 PF00425 chorismate binding enzyme C9E88_007210 PF04715 Anthranilate synthase component I, N terminal region C9E88_007250 PF00293 NUDIX domain C9E88_007255 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_007260 PF00814 Glycoprotease family C9E88_007265 PF02673 Bacitracin resistance protein BacA C9E88_007270 PF04445 Putative SAM-dependent methyltransferase C9E88_007280 PF00756 Putative esterase C9E88_007290 PF00834 Ribulose-phosphate 3 epimerase family C9E88_007300 PF07732 Multicopper oxidase C9E88_007300 PF07731 Multicopper oxidase C9E88_007300 PF00394 Multicopper oxidase C9E88_007315 PF00893 Small Multidrug Resistance protein C9E88_007320 PF00893 Small Multidrug Resistance protein C9E88_007325 PF08378 Nuclease-related domain C9E88_007335 PF01207 Dihydrouridine synthase (Dus) C9E88_007360 PF07963 Prokaryotic N-terminal methylation motif C9E88_007360 PF00114 Pilin (bacterial filament) C9E88_007370 PF02978 Signal peptide binding domain C9E88_007370 PF02881 SRP54-type protein, helical bundle domain C9E88_007370 PF00448 SRP54-type protein, GTPase domain C9E88_007380 PF03309 Type III pantothenate kinase C9E88_007390 PF01925 Sulfite exporter TauE/SafE C9E88_007400 PF02463 RecF/RecN/SMC N terminal domain C9E88_007410 PF01653 NAD-dependent DNA ligase adenylation domain C9E88_007410 PF12826 Helix-hairpin-helix motif C9E88_007410 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C9E88_007410 PF00533 BRCA1 C Terminus (BRCT) domain C9E88_007410 PF03120 NAD-dependent DNA ligase OB-fold domain C9E88_007415 PF16363 GDP-mannose 4,6 dehydratase C9E88_007430 PF05971 RNA methyltransferase C9E88_007435 PF00210 Ferritin-like domain C9E88_007440 PF00578 AhpC/TSA family C9E88_007450 PF12697 Alpha/beta hydrolase family C9E88_007455 PF04055 Radical SAM superfamily C9E88_007455 PF06968 Biotin and Thiamin Synthesis associated domain C9E88_007455 PF00202 Aminotransferase class-III C9E88_007460 PF00155 Aminotransferase class I and II C9E88_007480 PF01479 S4 domain C9E88_007480 PF00849 RNA pseudouridylate synthase C9E88_007485 PF04079 Segregation and condensation complex subunit ScpB C9E88_007490 PF02616 Segregation and condensation protein ScpA C9E88_007500 PF01300 Telomere recombination C9E88_007505 PF04315 Elongation factor P hydroxylase C9E88_007510 PF02620 Large ribosomal RNA subunit accumulation protein YceD C9E88_007515 PF01783 Ribosomal L32p protein family C9E88_007520 PF00698 Acyl transferase domain C9E88_007530 PF00550 Phosphopantetheine attachment site C9E88_007535 PF01476 LysM domain C9E88_007535 PF04972 BON domain C9E88_007545 PF02801 Beta-ketoacyl synthase, C-terminal domain C9E88_007545 PF00109 Beta-ketoacyl synthase, N-terminal domain C9E88_007555 PF00164 Ribosomal protein S12/S23 C9E88_007560 PF00177 Ribosomal protein S7p/S5e C9E88_007565 PF03144 Elongation factor Tu domain 2 C9E88_007565 PF00679 Elongation factor G C-terminus C9E88_007565 PF14492 Elongation Factor G, domain II C9E88_007565 PF03764 Elongation factor G, domain IV C9E88_007565 PF00009 Elongation factor Tu GTP binding domain C9E88_007570 PF00009 Elongation factor Tu GTP binding domain C9E88_007570 PF03144 Elongation factor Tu domain 2 C9E88_007570 PF03143 Elongation factor Tu C-terminal domain C9E88_007580 PF00583 Acetyltransferase (GNAT) family C9E88_007585 PF04377 Arginine-tRNA-protein transferase, C terminus C9E88_007585 PF04376 Arginine-tRNA-protein transferase, N terminus C9E88_007590 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C9E88_007595 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_007600 PF01580 FtsK/SpoIIIE family C9E88_007600 PF17854 FtsK alpha domain C9E88_007600 PF09397 Ftsk gamma domain C9E88_007600 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C9E88_007620 PF03895 YadA-like membrane anchor domain C9E88_007620 PF13018 Extended Signal Peptide of Type V secretion system C9E88_007620 PF05662 Coiled stalk of trimeric autotransporter adhesin C9E88_007620 PF05658 Head domain of trimeric autotransporter adhesin C9E88_007635 PF03776 Septum formation topological specificity factor MinE C9E88_007640 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C9E88_007645 PF03775 Septum formation inhibitor MinC, C-terminal domain C9E88_007655 PF01553 Acyltransferase C9E88_007660 PF13488 Glycine zipper C9E88_007660 PF00691 OmpA family C9E88_007665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_007665 PF03466 LysR substrate binding domain C9E88_007670 PF00175 Oxidoreductase NAD-binding domain C9E88_007670 PF00970 Oxidoreductase FAD-binding domain C9E88_007685 PF10609 NUBPL iron-transfer P-loop NTPase C9E88_007695 PF00692 dUTPase C9E88_007720 PF03129 Anticodon binding domain C9E88_007720 PF04073 Aminoacyl-tRNA editing domain C9E88_007720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C9E88_007725 PF00873 AcrB/AcrD/AcrF family C9E88_007730 PF13533 Biotin-lipoyl like C9E88_007740 PF00072 Response regulator receiver domain C9E88_007745 PF00072 Response regulator receiver domain C9E88_007750 PF01584 CheW-like domain C9E88_007755 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C9E88_007755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C9E88_007760 PF01627 Hpt domain C9E88_007760 PF00072 Response regulator receiver domain C9E88_007760 PF01584 CheW-like domain C9E88_007760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_007770 PF01546 Peptidase family M20/M25/M40 C9E88_007770 PF07687 Peptidase dimerisation domain C9E88_007775 PF08085 Entericidin EcnA/B family C9E88_007785 PF04304 Protein of unknown function (DUF454) C9E88_007845 PF00175 Oxidoreductase NAD-binding domain C9E88_007845 PF00667 FAD binding domain C9E88_007845 PF00258 Flavodoxin C9E88_007855 PF12805 FUSC-like inner membrane protein yccS C9E88_007860 PF07690 Major Facilitator Superfamily C9E88_007865 PF00881 Nitroreductase family C9E88_007875 PF03616 Sodium/glutamate symporter C9E88_007880 PF01235 Sodium:alanine symporter family C9E88_007885 PF01734 Patatin-like phospholipase C9E88_007895 PF03061 Thioesterase superfamily C9E88_007900 PF00440 Bacterial regulatory proteins, tetR family C9E88_007905 PF07690 Major Facilitator Superfamily C9E88_007910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_007910 PF03466 LysR substrate binding domain C9E88_007915 PF01494 FAD binding domain C9E88_007925 PF02492 CobW/HypB/UreG, nucleotide-binding domain C9E88_007925 PF07683 Cobalamin synthesis protein cobW C-terminal domain C9E88_007930 PF07152 YaeQ protein C9E88_007935 PF02308 MgtC family C9E88_007940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_007945 PF00990 Diguanylate cyclase, GGDEF domain C9E88_007980 PF00083 Sugar (and other) transporter C9E88_007980 PF08946 Osmosensory transporter coiled coil C9E88_008000 PF01327 Polypeptide deformylase C9E88_008010 PF07690 Major Facilitator Superfamily C9E88_008020 PF00580 UvrD/REP helicase N-terminal domain C9E88_008020 PF13361 UvrD-like helicase C-terminal domain C9E88_008025 PF02733 Dak1 domain C9E88_008030 PF17151 Periplasmic sensor domain C9E88_008030 PF00990 Diguanylate cyclase, GGDEF domain C9E88_008035 PF04480 Protein of unknown function (DUF559) C9E88_008050 PF02574 Homocysteine S-methyltransferase C9E88_008050 PF02310 B12 binding domain C9E88_008050 PF02607 B12 binding domain C9E88_008050 PF02965 Vitamin B12 dependent methionine synthase, activation domain C9E88_008050 PF00809 Pterin binding enzyme C9E88_008055 PF01384 Phosphate transporter family C9E88_008080 PF01521 Iron-sulphur cluster biosynthesis C9E88_008080 PF01106 NifU-like domain C9E88_008085 PF07715 TonB-dependent Receptor Plug Domain C9E88_008085 PF00593 TonB dependent receptor C9E88_008095 PF00561 alpha/beta hydrolase fold C9E88_008100 PF00484 Carbonic anhydrase C9E88_008105 PF13472 GDSL-like Lipase/Acylhydrolase family C9E88_008110 PF00005 ABC transporter C9E88_008120 PF01694 Rhomboid family C9E88_008125 PF00912 Transglycosylase C9E88_008130 PF02503 Polyphosphate kinase middle domain C9E88_008130 PF13090 Polyphosphate kinase C-terminal domain 2 C9E88_008130 PF13089 Polyphosphate kinase N-terminal domain C9E88_008130 PF17941 Polyphosphate kinase C-terminal domain 1 C9E88_008135 PF00196 Bacterial regulatory proteins, luxR family C9E88_008135 PF00072 Response regulator receiver domain C9E88_008140 PF03466 LysR substrate binding domain C9E88_008140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_008150 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_008150 PF18113 Rubredoxin binding C-terminal domain C9E88_008155 PF00301 Rubredoxin C9E88_008160 PF00156 Phosphoribosyl transferase domain C9E88_008170 PF00152 tRNA synthetases class II (D, K and N) C9E88_008170 PF01336 OB-fold nucleic acid binding domain C9E88_008180 PF00579 tRNA synthetases class I (W and Y) C9E88_008185 PF05661 Protein of unknown function (DUF808) C9E88_008190 PF04228 Putative neutral zinc metallopeptidase C9E88_008200 PF00999 Sodium/hydrogen exchanger family C9E88_008235 PF00582 Universal stress protein family C9E88_008250 PF02540 NAD synthase C9E88_008250 PF00795 Carbon-nitrogen hydrolase C9E88_008260 PF17868 AAA lid domain C9E88_008260 PF12592 Protein of unknown function (DUF3763) C9E88_008260 PF07728 AAA domain (dynein-related subfamily) C9E88_008265 PF05762 VWA domain containing CoxE-like protein C9E88_008280 PF00743 Flavin-binding monooxygenase-like C9E88_008285 PF00285 Citrate synthase, C-terminal domain C9E88_008290 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C9E88_008295 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C9E88_008300 PF02910 Fumarate reductase flavoprotein C-term C9E88_008300 PF00890 FAD binding domain C9E88_008305 PF13085 2Fe-2S iron-sulfur cluster binding domain C9E88_008310 PF16078 2-oxoglutarate dehydrogenase N-terminus C9E88_008310 PF00676 Dehydrogenase E1 component C9E88_008310 PF16870 2-oxoglutarate dehydrogenase C-terminal C9E88_008310 PF02779 Transketolase, pyrimidine binding domain C9E88_008315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C9E88_008315 PF00364 Biotin-requiring enzyme C9E88_008315 PF02817 e3 binding domain C9E88_008320 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_008320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C9E88_008325 PF00549 CoA-ligase C9E88_008325 PF08442 ATP-grasp domain C9E88_008330 PF00549 CoA-ligase C9E88_008330 PF02629 CoA binding domain C9E88_008335 PF15975 Flotillin C9E88_008335 PF01145 SPFH domain / Band 7 family C9E88_008350 PF01507 Phosphoadenosine phosphosulfate reductase family C9E88_008355 PF00009 Elongation factor Tu GTP binding domain C9E88_008375 PF03551 Transcriptional regulator PadR-like family C9E88_008395 PF08240 Alcohol dehydrogenase GroES-like domain C9E88_008395 PF00107 Zinc-binding dehydrogenase C9E88_008415 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C9E88_008415 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C9E88_008430 PF00083 Sugar (and other) transporter C9E88_008435 PF01266 FAD dependent oxidoreductase C9E88_008435 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C9E88_008445 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain C9E88_008445 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain C9E88_008450 PF00781 Diacylglycerol kinase catalytic domain C9E88_008455 PF00149 Calcineurin-like phosphoesterase C9E88_008460 PF00166 Chaperonin 10 Kd subunit C9E88_008465 PF00118 TCP-1/cpn60 chaperonin family C9E88_008485 PF00196 Bacterial regulatory proteins, luxR family C9E88_008495 PF00593 TonB dependent receptor C9E88_008495 PF07715 TonB-dependent Receptor Plug Domain C9E88_008500 PF04170 NlpE N-terminal domain C9E88_008500 PF17185 NlpE C-terminal OB domain C9E88_008505 PF01553 Acyltransferase C9E88_008530 PF00905 Penicillin binding protein transpeptidase domain C9E88_008530 PF03717 Penicillin-binding Protein dimerisation domain C9E88_008545 PF05191 Adenylate kinase, active site lid C9E88_008555 PF00633 Helix-hairpin-helix motif C9E88_008555 PF10576 Iron-sulfur binding domain of endonuclease III C9E88_008555 PF00730 HhH-GPD superfamily base excision DNA repair protein C9E88_008560 PF04060 Putative Fe-S cluster C9E88_008565 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C9E88_008565 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C9E88_008575 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C9E88_008580 PF02590 Predicted SPOUT methyltransferase C9E88_008585 PF04389 Peptidase family M28 C9E88_008590 PF05362 Lon protease (S16) C-terminal proteolytic domain C9E88_008590 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_008590 PF02190 ATP-dependent protease La (LON) substrate-binding domain C9E88_008595 PF01812 5-formyltetrahydrofolate cyclo-ligase family C9E88_008610 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding C9E88_008610 PF18381 YcaO cyclodehydratase C-terminal domain C9E88_008635 PF03695 Uncharacterised protein family (UPF0149) C9E88_008640 PF05195 Aminopeptidase P, N-terminal domain C9E88_008640 PF00557 Metallopeptidase family M24 C9E88_008650 PF09278 MerR, DNA binding C9E88_008650 PF00376 MerR family regulatory protein C9E88_008655 PF00440 Bacterial regulatory proteins, tetR family C9E88_008665 PF00561 alpha/beta hydrolase fold C9E88_008670 PF01494 FAD binding domain C9E88_008675 PF01494 FAD binding domain C9E88_008690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C9E88_008700 PF02021 Uncharacterised protein family UPF0102 C9E88_008710 PF07859 alpha/beta hydrolase fold C9E88_008720 PF00293 NUDIX domain C9E88_008720 PF09297 NADH pyrophosphatase zinc ribbon domain C9E88_008730 PF00929 Exonuclease C9E88_008735 PF01476 LysM domain C9E88_008735 PF01464 Transglycosylase SLT domain C9E88_008740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C9E88_008745 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_008750 PF12911 N-terminal TM domain of oligopeptide transport permease C C9E88_008750 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_008755 PF00005 ABC transporter C9E88_008755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C9E88_008760 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_008760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_008790 PF00324 Amino acid permease C9E88_008800 PF00324 Amino acid permease C9E88_008825 PF00929 Exonuclease C9E88_008830 PF01979 Amidohydrolase family C9E88_008835 PF08448 PAS fold C9E88_008835 PF00990 Diguanylate cyclase, GGDEF domain C9E88_008840 PF00764 Arginosuccinate synthase C9E88_008850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_008850 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_008905 PF02661 Fic/DOC family C9E88_008915 PF02384 N-6 DNA Methylase C9E88_008985 PF17954 Quercetinase C-terminal cupin domain C9E88_008985 PF02678 Pirin C9E88_008995 PF01208 Uroporphyrinogen decarboxylase (URO-D) C9E88_009000 PF05675 Protein of unknown function (DUF817) C9E88_009015 PF00990 Diguanylate cyclase, GGDEF domain C9E88_009025 PF01227 GTP cyclohydrolase I C9E88_009035 PF01593 Flavin containing amine oxidoreductase C9E88_009040 PF00218 Indole-3-glycerol phosphate synthase C9E88_009045 PF02885 Glycosyl transferase family, helical bundle domain C9E88_009045 PF00591 Glycosyl transferase family, a/b domain C9E88_009050 PF00117 Glutamine amidotransferase class-I C9E88_009055 PF05159 Capsule polysaccharide biosynthesis protein C9E88_009060 PF01050 Mannose-6-phosphate isomerase C9E88_009060 PF00483 Nucleotidyl transferase C9E88_009070 PF01061 ABC-2 type transporter C9E88_009075 PF00005 ABC transporter C9E88_009080 PF00534 Glycosyl transferases group 1 C9E88_009080 PF13439 Glycosyltransferase Family 4 C9E88_009095 PF02563 Polysaccharide biosynthesis/export protein C9E88_009100 PF00534 Glycosyl transferases group 1 C9E88_009100 PF13439 Glycosyltransferase Family 4 C9E88_009105 PF05159 Capsule polysaccharide biosynthesis protein C9E88_009110 PF00534 Glycosyl transferases group 1 C9E88_009110 PF13439 Glycosyltransferase Family 4 C9E88_009130 PF04345 Chorismate lyase C9E88_009135 PF01040 UbiA prenyltransferase family C9E88_009145 PF03466 LysR substrate binding domain C9E88_009145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_009200 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C9E88_009200 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C9E88_009205 PF01784 NIF3 (NGG1p interacting factor 3) C9E88_009210 PF13180 PDZ domain C9E88_009210 PF17820 PDZ domain C9E88_009220 PF12697 Alpha/beta hydrolase family C9E88_009225 PF00296 Luciferase-like monooxygenase C9E88_009230 PF00857 Isochorismatase family C9E88_009235 PF01042 Endoribonuclease L-PSP C9E88_009240 PF01613 Flavin reductase like domain C9E88_009245 PF00860 Permease family C9E88_009250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C9E88_009250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C9E88_009265 PF04055 Radical SAM superfamily C9E88_009270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C9E88_009270 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_009280 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C9E88_009300 PF00990 Diguanylate cyclase, GGDEF domain C9E88_009310 PF17757 UvrB interaction domain C9E88_009310 PF12344 Ultra-violet resistance protein B C9E88_009310 PF02151 UvrB/uvrC motif C9E88_009310 PF04851 Type III restriction enzyme, res subunit C9E88_009310 PF00271 Helicase conserved C-terminal domain C9E88_009330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C9E88_009330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C9E88_009350 PF05368 NmrA-like family C9E88_009355 PF01638 HxlR-like helix-turn-helix C9E88_009360 PF07690 Major Facilitator Superfamily C9E88_009365 PF01926 50S ribosome-binding GTPase C9E88_009365 PF01018 GTP1/OBG C9E88_009370 PF01472 PUA domain C9E88_009370 PF00696 Amino acid kinase family C9E88_009375 PF01569 PAP2 superfamily C9E88_009385 PF00202 Aminotransferase class-III C9E88_009390 PF00282 Pyridoxal-dependent decarboxylase conserved domain C9E88_009400 PF12849 PBP superfamily domain C9E88_009405 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_009410 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_009415 PF00005 ABC transporter C9E88_009430 PF01343 Peptidase family S49 C9E88_009430 PF08496 Peptidase family S49 N-terminal C9E88_009460 PF00206 Lyase C9E88_009460 PF08328 Adenylosuccinate lyase C-terminal C9E88_009465 PF04356 Protein of unknown function (DUF489) C9E88_009475 PF00293 NUDIX domain C9E88_009480 PF07883 Cupin domain C9E88_009480 PF01381 Helix-turn-helix C9E88_009485 PF13536 Putative multidrug resistance efflux transporter C9E88_009495 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_009500 PF00768 D-alanyl-D-alanine carboxypeptidase C9E88_009500 PF07943 Penicillin-binding protein 5, C-terminal domain C9E88_009515 PF01975 Survival protein SurE C9E88_009520 PF01476 LysM domain C9E88_009520 PF01551 Peptidase family M23 C9E88_009525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_009525 PF03466 LysR substrate binding domain C9E88_009530 PF00202 Aminotransferase class-III C9E88_009535 PF00462 Glutaredoxin C9E88_009540 PF13654 AAA domain C9E88_009540 PF05362 Lon protease (S16) C-terminal proteolytic domain C9E88_009545 PF07690 Major Facilitator Superfamily C9E88_009550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C9E88_009555 PF13593 SBF-like CPA transporter family (DUF4137) C9E88_009565 PF01197 Ribosomal protein L31 C9E88_009580 PF04055 Radical SAM superfamily C9E88_009585 PF01132 Elongation factor P (EF-P) OB domain C9E88_009585 PF08207 Elongation factor P (EF-P) KOW-like domain C9E88_009585 PF09285 Elongation factor P, C-terminal C9E88_009590 PF13722 5TM C-terminal transporter carbon starvation CstA C9E88_009590 PF02554 Carbon starvation protein CstA C9E88_009595 PF04328 Selenoprotein, putative C9E88_009600 PF17863 AAA lid domain C9E88_009600 PF07726 ATPase family associated with various cellular activities (AAA) C9E88_009610 PF11992 Domain of unknown function (DUF3488) C9E88_009610 PF01841 Transglutaminase-like superfamily C9E88_009610 PF13559 Domain of unknown function (DUF4129) C9E88_009695 PF01867 CRISPR associated protein Cas1 C9E88_009720 PF02566 OsmC-like protein C9E88_009725 PF13545 Crp-like helix-turn-helix domain C9E88_009725 PF00027 Cyclic nucleotide-binding domain C9E88_009730 PF00248 Aldo/keto reductase family C9E88_009735 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_009735 PF17871 AAA lid domain C9E88_009735 PF02861 Clp amino terminal domain, pathogenicity island component C9E88_009735 PF07724 AAA domain (Cdc48 subfamily) C9E88_009735 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_009775 PF02926 THUMP domain C9E88_009775 PF01170 Putative RNA methylase family UPF0020 C9E88_009775 PF10672 S-adenosylmethionine-dependent methyltransferase C9E88_009785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C9E88_009785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C9E88_009790 PF01979 Amidohydrolase family C9E88_009795 PF00691 OmpA family C9E88_009815 PF05199 GMC oxidoreductase C9E88_009815 PF00732 GMC oxidoreductase C9E88_009820 PF00171 Aldehyde dehydrogenase family C9E88_009825 PF02390 Putative methyltransferase C9E88_009835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_009835 PF07730 Histidine kinase C9E88_009835 PF05231 MASE1 C9E88_009840 PF01740 STAS domain C9E88_009840 PF00916 Sulfate permease family C9E88_009845 PF02798 Glutathione S-transferase, N-terminal domain C9E88_009845 PF00043 Glutathione S-transferase, C-terminal domain C9E88_009855 PF05690 Thiazole biosynthesis protein ThiG C9E88_009865 PF04241 Protein of unknown function (DUF423) C9E88_009875 PF04545 Sigma-70, region 4 C9E88_009875 PF04542 Sigma-70 region 2 C9E88_009875 PF00140 Sigma-70 factor, region 1.2 C9E88_009885 PF00313 'Cold-shock' DNA-binding domain C9E88_009890 PF00270 DEAD/DEAH box helicase C9E88_009890 PF00271 Helicase conserved C-terminal domain C9E88_009900 PF00881 Nitroreductase family C9E88_009905 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C9E88_009905 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C9E88_009925 PF01180 Dihydroorotate dehydrogenase C9E88_009935 PF00156 Phosphoribosyl transferase domain C9E88_009950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_009950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_009955 PF01435 Peptidase family M48 C9E88_009970 PF09424 Yqey-like protein C9E88_009975 PF01165 Ribosomal protein S21 C9E88_009980 PF00814 Glycoprotease family C9E88_009985 PF01699 Sodium/calcium exchanger protein C9E88_010005 PF03793 PASTA domain C9E88_010005 PF00069 Protein kinase domain C9E88_010065 PF16123 Hydroxyacylglutathione hydrolase C-terminus C9E88_010065 PF00753 Metallo-beta-lactamase superfamily C9E88_010070 PF01757 Acyltransferase family C9E88_010075 PF01613 Flavin reductase like domain C9E88_010080 PF02567 Phenazine biosynthesis-like protein C9E88_010085 PF05193 Peptidase M16 inactive domain C9E88_010085 PF00675 Insulinase (Peptidase family M16) C9E88_010115 PF02581 Thiamine monophosphate synthase C9E88_010120 PF00202 Aminotransferase class-III C9E88_010125 PF03928 Haem-degrading C9E88_010130 PF13737 Transposase DDE domain C9E88_010140 PF00849 RNA pseudouridylate synthase C9E88_010145 PF00271 Helicase conserved C-terminal domain C9E88_010145 PF18337 RapA N-terminal Tudor like domain C9E88_010145 PF18339 RapA N-terminal Tudor like domain 1 C9E88_010145 PF00176 SNF2 family N-terminal domain C9E88_010145 PF12137 RNA polymerase recycling family C-terminal C9E88_010175 PF00072 Response regulator receiver domain C9E88_010175 PF00196 Bacterial regulatory proteins, luxR family C9E88_010180 PF00440 Bacterial regulatory proteins, tetR family C9E88_010185 PF00970 Oxidoreductase FAD-binding domain C9E88_010185 PF00111 2Fe-2S iron-sulfur cluster binding domain C9E88_010185 PF00175 Oxidoreductase NAD-binding domain C9E88_010190 PF00487 Fatty acid desaturase C9E88_010200 PF07759 Protein of unknown function (DUF1615) C9E88_010205 PF14883 Hypothetical glycosyl hydrolase family 13 C9E88_010205 PF01522 Polysaccharide deacetylase C9E88_010210 PF00535 Glycosyl transferase family 2 C9E88_010220 PF01207 Dihydrouridine synthase (Dus) C9E88_010225 PF03060 Nitronate monooxygenase C9E88_010245 PF04143 Sulphur transport C9E88_010265 PF00438 S-adenosylmethionine synthetase, N-terminal domain C9E88_010265 PF02773 S-adenosylmethionine synthetase, C-terminal domain C9E88_010265 PF02772 S-adenosylmethionine synthetase, central domain C9E88_010270 PF02780 Transketolase, C-terminal domain C9E88_010270 PF00456 Transketolase, thiamine diphosphate binding domain C9E88_010270 PF02779 Transketolase, pyrimidine binding domain C9E88_010295 PF01810 LysE type translocator C9E88_010300 PF00117 Glutamine amidotransferase class-I C9E88_010300 PF02540 NAD synthase C9E88_010300 PF00958 GMP synthase C terminal domain C9E88_010315 PF09190 DALR domain C9E88_010315 PF01406 tRNA synthetases class I (C) catalytic domain C9E88_010325 PF00571 CBS domain C9E88_010325 PF01380 SIS domain C9E88_010340 PF03968 OstA-like protein C9E88_010345 PF00005 ABC transporter C9E88_010345 PF12399 Branched-chain amino acid ATP-binding cassette transporter C9E88_010350 PF02321 Outer membrane efflux protein C9E88_010355 PF00005 ABC transporter C9E88_010355 PF03412 Peptidase C39 family C9E88_010355 PF00664 ABC transporter transmembrane region C9E88_010365 PF01205 Uncharacterized protein family UPF0029 C9E88_010370 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_010370 PF12464 Maltose acetyltransferase C9E88_010375 PF00582 Universal stress protein family C9E88_010380 PF01596 O-methyltransferase C9E88_010390 PF00037 4Fe-4S binding domain C9E88_010390 PF11953 Domain of unknown function (DUF3470) C9E88_010395 PF00488 MutS domain V C9E88_010395 PF01624 MutS domain I C9E88_010395 PF05190 MutS family domain IV C9E88_010395 PF05188 MutS domain II C9E88_010395 PF05192 MutS domain III C9E88_010400 PF00990 Diguanylate cyclase, GGDEF domain C9E88_010420 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_010425 PF00588 SpoU rRNA Methylase family C9E88_010430 PF07733 Bacterial DNA polymerase III alpha NTPase domain C9E88_010430 PF02811 PHP domain C9E88_010430 PF14579 Helix-hairpin-helix motif C9E88_010430 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C9E88_010430 PF01336 OB-fold nucleic acid binding domain C9E88_010440 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_010445 PF09383 NIL domain C9E88_010445 PF00005 ABC transporter C9E88_010450 PF03180 NLPA lipoprotein C9E88_010465 PF13302 Acetyltransferase (GNAT) domain C9E88_010475 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C9E88_010475 PF02843 Phosphoribosylglycinamide synthetase, C domain C9E88_010475 PF02844 Phosphoribosylglycinamide synthetase, N domain C9E88_010480 PF01808 AICARFT/IMPCHase bienzyme C9E88_010480 PF02142 MGS-like domain C9E88_010485 PF02954 Bacterial regulatory protein, Fis family C9E88_010515 PF13932 GidA associated domain C9E88_010515 PF01134 Glucose inhibited division protein A C9E88_010520 PF13737 Transposase DDE domain C9E88_010530 PF07690 Major Facilitator Superfamily C9E88_010540 PF00072 Response regulator receiver domain C9E88_010540 PF02954 Bacterial regulatory protein, Fis family C9E88_010540 PF00158 Sigma-54 interaction domain C9E88_010545 PF00989 PAS fold C9E88_010545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_010545 PF00512 His Kinase A (phospho-acceptor) domain C9E88_010550 PF04055 Radical SAM superfamily C9E88_010550 PF18693 TRAM domain C9E88_010550 PF00919 Uncharacterized protein family UPF0004 C9E88_010555 PF00696 Amino acid kinase family C9E88_010560 PF01765 Ribosome recycling factor C9E88_010565 PF01255 Putative undecaprenyl diphosphate synthase C9E88_010575 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C9E88_010575 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C9E88_010575 PF13288 DXP reductoisomerase C-terminal domain C9E88_010580 PF13180 PDZ domain C9E88_010580 PF17820 PDZ domain C9E88_010580 PF02163 Peptidase family M50 C9E88_010585 PF07244 Surface antigen variable number repeat C9E88_010585 PF01103 Surface antigen C9E88_010595 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_010595 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C9E88_010600 PF07977 FabA-like domain C9E88_010605 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C9E88_010605 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_010620 PF02631 RecX family C9E88_010625 PF00154 recA bacterial DNA recombination protein C9E88_010630 PF01479 S4 domain C9E88_010635 PF13419 Haloacid dehalogenase-like hydrolase C9E88_010640 PF00459 Inositol monophosphatase family C9E88_010655 PF01649 Ribosomal protein S20 C9E88_010660 PF13460 NAD(P)H-binding C9E88_010665 PF03737 Aldolase/RraA C9E88_010675 PF00072 Response regulator receiver domain C9E88_010675 PF00196 Bacterial regulatory proteins, luxR family C9E88_010680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_010680 PF07730 Histidine kinase C9E88_010680 PF05231 MASE1 C9E88_010685 PF08007 Cupin superfamily protein C9E88_010700 PF02545 Maf-like protein C9E88_010710 PF00162 Phosphoglycerate kinase C9E88_010720 PF01116 Fructose-bisphosphate aldolase class-II C9E88_010740 PF00881 Nitroreductase family C9E88_010750 PF03328 HpcH/HpaI aldolase/citrate lyase family C9E88_010760 PF00296 Luciferase-like monooxygenase C9E88_010765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_010765 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_010765 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C9E88_010770 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_010770 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C9E88_010770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_010775 PF00149 Calcineurin-like phosphoesterase C9E88_010780 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C9E88_010785 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C9E88_010785 PF00749 tRNA synthetases class I (E and Q), catalytic domain C9E88_010790 PF01062 Bestrophin, RFP-TM, chloride channel C9E88_010795 PF00580 UvrD/REP helicase N-terminal domain C9E88_010795 PF13361 UvrD-like helicase C-terminal domain C9E88_010815 PF05958 tRNA (Uracil-5-)-methyltransferase C9E88_010820 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C9E88_010820 PF14850 DNA-binding domain of Proline dehydrogenase C9E88_010820 PF01619 Proline dehydrogenase C9E88_010820 PF00171 Aldehyde dehydrogenase family C9E88_010825 PF01037 Lrp/AsnC ligand binding domain C9E88_010830 PF00474 Sodium:solute symporter family C9E88_010835 PF00206 Lyase C9E88_010835 PF10415 Fumarase C C-terminus C9E88_010845 PF17757 UvrB interaction domain C9E88_010845 PF00271 Helicase conserved C-terminal domain C9E88_010845 PF02559 CarD-like/TRCF domain C9E88_010845 PF03461 TRCF domain C9E88_010845 PF00270 DEAD/DEAH box helicase C9E88_010855 PF00211 Adenylate and Guanylate cyclase catalytic domain C9E88_010860 PF00111 2Fe-2S iron-sulfur cluster binding domain C9E88_010865 PF00012 Hsp70 protein C9E88_010870 PF07743 HSCB C-terminal oligomerisation domain C9E88_010870 PF00226 DnaJ domain C9E88_010875 PF01521 Iron-sulphur cluster biosynthesis C9E88_010880 PF01592 NifU-like N terminal domain C9E88_010885 PF00266 Aminotransferase class-V C9E88_010890 PF02082 Transcriptional regulator C9E88_010905 PF00216 Bacterial DNA-binding protein C9E88_010910 PF09312 SurA N-terminal domain C9E88_010920 PF00561 alpha/beta hydrolase fold C9E88_010940 PF07290 Protein of unknown function (DUF1449) C9E88_010950 PF00294 pfkB family carbohydrate kinase C9E88_010965 PF05193 Peptidase M16 inactive domain C9E88_010965 PF08367 Peptidase M16C associated C9E88_010965 PF00675 Insulinase (Peptidase family M16) C9E88_010970 PF02253 Phospholipase A1 C9E88_010975 PF02386 Cation transport protein C9E88_010980 PF02254 TrkA-N domain C9E88_010980 PF02080 TrkA-C domain C9E88_010995 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_010995 PF00585 C-terminal regulatory domain of Threonine dehydratase C9E88_011000 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C9E88_011020 PF13613 Helix-turn-helix of DDE superfamily endonuclease C9E88_011020 PF13359 DDE superfamily endonuclease C9E88_011025 PF00535 Glycosyl transferase family 2 C9E88_011035 PF01118 Semialdehyde dehydrogenase, NAD binding domain C9E88_011035 PF02774 Semialdehyde dehydrogenase, dimerisation domain C9E88_011045 PF02617 ATP-dependent Clp protease adaptor protein ClpS C9E88_011050 PF17871 AAA lid domain C9E88_011050 PF07724 AAA domain (Cdc48 subfamily) C9E88_011050 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_011050 PF02861 Clp amino terminal domain, pathogenicity island component C9E88_011050 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_011055 PF02694 Uncharacterised BCR, YnfA/UPF0060 family C9E88_011065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C9E88_011065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C9E88_011080 PF00285 Citrate synthase, C-terminal domain C9E88_011085 PF18146 Damage-inducible protein CinA KH domain C9E88_011085 PF00994 Probable molybdopterin binding domain C9E88_011085 PF02464 Competence-damaged protein C9E88_011100 PF00583 Acetyltransferase (GNAT) family C9E88_011105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_011105 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_011105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_011110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_011110 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_011110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_011115 PF03109 ABC1 family C9E88_011130 PF05175 Methyltransferase small domain C9E88_011135 PF01264 Chorismate synthase C9E88_011155 PF01266 FAD dependent oxidoreductase C9E88_011165 PF02542 YgbB family C9E88_011175 PF00793 DAHP synthetase I family C9E88_011180 PF01925 Sulfite exporter TauE/SafE C9E88_011190 PF02684 Lipid-A-disaccharide synthetase C9E88_011200 PF12833 Helix-turn-helix domain C9E88_011200 PF12852 Cupin C9E88_011205 PF00487 Fatty acid desaturase C9E88_011210 PF04073 Aminoacyl-tRNA editing domain C9E88_011215 PF04183 IucA / IucC family C9E88_011215 PF06276 Ferric iron reductase FhuF-like transporter C9E88_011220 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) C9E88_011225 PF06276 Ferric iron reductase FhuF-like transporter C9E88_011225 PF04183 IucA / IucC family C9E88_011240 PF07690 Major Facilitator Superfamily C9E88_011245 PF07715 TonB-dependent Receptor Plug Domain C9E88_011245 PF00593 TonB dependent receptor C9E88_011255 PF13419 Haloacid dehalogenase-like hydrolase C9E88_011265 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase C9E88_011270 PF02277 Phosphoribosyltransferase C9E88_011280 PF02654 Cobalamin-5-phosphate synthase C9E88_011290 PF01638 HxlR-like helix-turn-helix C9E88_011310 PF02635 DsrE/DsrF-like family C9E88_011320 PF16363 GDP-mannose 4,6 dehydratase C9E88_011325 PF10415 Fumarase C C-terminus C9E88_011325 PF00206 Lyase C9E88_011360 PF05525 Branched-chain amino acid transport protein C9E88_011365 PF00557 Metallopeptidase family M24 C9E88_011370 PF03466 LysR substrate binding domain C9E88_011370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_011375 PF12697 Alpha/beta hydrolase family C9E88_011385 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_011385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_011400 PF07690 Major Facilitator Superfamily C9E88_011405 PF00248 Aldo/keto reductase family C9E88_011410 PF03466 LysR substrate binding domain C9E88_011410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_011420 PF06418 CTP synthase N-terminus C9E88_011420 PF00117 Glutamine amidotransferase class-I C9E88_011425 PF00793 DAHP synthetase I family C9E88_011430 PF03952 Enolase, N-terminal domain C9E88_011430 PF00113 Enolase, C-terminal TIM barrel domain C9E88_011435 PF04977 Septum formation initiator C9E88_011440 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C9E88_011445 PF01098 Cell cycle protein C9E88_011465 PF08173 Membrane bound YbgT-like protein C9E88_011470 PF02322 Cytochrome bd terminal oxidase subunit II C9E88_011475 PF01654 Cytochrome bd terminal oxidase subunit I C9E88_011485 PF00267 Gram-negative porin C9E88_011490 PF01230 HIT domain C9E88_011500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C9E88_011500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C9E88_011510 PF01053 Cys/Met metabolism PLP-dependent enzyme C9E88_011515 PF02575 YbaB/EbfC DNA-binding family C9E88_011520 PF02132 RecR protein C9E88_011520 PF13662 Toprim domain C9E88_011525 PF00570 HRDC domain C9E88_011525 PF01612 3'-5' exonuclease C9E88_011535 PF05166 YcgL domain C9E88_011545 PF01434 Peptidase family M41 C9E88_011545 PF17862 AAA+ lid domain C9E88_011545 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_011555 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_011565 PF00571 CBS domain C9E88_011595 PF05193 Peptidase M16 inactive domain C9E88_011595 PF00675 Insulinase (Peptidase family M16) C9E88_011600 PF02881 SRP54-type protein, helical bundle domain C9E88_011600 PF00448 SRP54-type protein, GTPase domain C9E88_011615 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) C9E88_011645 PF07694 5TMR of 5TMR-LYT C9E88_011645 PF00990 Diguanylate cyclase, GGDEF domain C9E88_011660 PF12832 MFS_1 like family C9E88_011665 PF00990 Diguanylate cyclase, GGDEF domain C9E88_011675 PF02785 Biotin carboxylase C-terminal domain C9E88_011675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_011675 PF00289 Biotin carboxylase, N-terminal domain C9E88_011680 PF00364 Biotin-requiring enzyme C9E88_011685 PF01220 Dehydroquinase class II C9E88_011710 PF04143 Sulphur transport C9E88_011720 PF04273 Putative phosphatase (DUF442) C9E88_011720 PF00753 Metallo-beta-lactamase superfamily C9E88_011725 PF12697 Alpha/beta hydrolase family C9E88_011755 PF17871 AAA lid domain C9E88_011755 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_011755 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_011755 PF07724 AAA domain (Cdc48 subfamily) C9E88_011810 PF00691 OmpA family C9E88_011810 PF18393 MotY N-terminal domain C9E88_011815 PF01425 Amidase C9E88_011835 PF13657 HipA N-terminal domain C9E88_011835 PF07804 HipA-like C-terminal domain C9E88_011840 PF00440 Bacterial regulatory proteins, tetR family C9E88_011845 PF02321 Outer membrane efflux protein C9E88_011855 PF00873 AcrB/AcrD/AcrF family C9E88_011860 PF09905 DNA-binding protein VF530 C9E88_011870 PF00873 AcrB/AcrD/AcrF family C9E88_011880 PF02321 Outer membrane efflux protein C9E88_011910 PF01557 Fumarylacetoacetate (FAA) hydrolase family C9E88_011915 PF01494 FAD binding domain C9E88_011920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C9E88_011925 PF00561 alpha/beta hydrolase fold C9E88_011950 PF02311 AraC-like ligand binding domain C9E88_011950 PF12833 Helix-turn-helix domain C9E88_011955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_011955 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_011955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_011955 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_011960 PF00171 Aldehyde dehydrogenase family C9E88_011965 PF00593 TonB dependent receptor C9E88_011965 PF07715 TonB-dependent Receptor Plug Domain C9E88_011970 PF10414 Sirohaem synthase dimerisation region C9E88_011970 PF14824 Sirohaem biosynthesis protein central C9E88_011970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C9E88_011975 PF03459 TOBE domain C9E88_011975 PF00005 ABC transporter C9E88_011980 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_011990 PF03453 MoeA N-terminal region (domain I and II) C9E88_011990 PF03454 MoeA C-terminal region (domain IV) C9E88_011990 PF00994 Probable molybdopterin binding domain C9E88_011995 PF01967 MoaC family C9E88_011995 PF00994 Probable molybdopterin binding domain C9E88_012000 PF02391 MoaE protein C9E88_012010 PF06463 Molybdenum Cofactor Synthesis C C9E88_012010 PF04055 Radical SAM superfamily C9E88_012015 PF12804 MobA-like NTP transferase domain C9E88_012020 PF00384 Molybdopterin oxidoreductase C9E88_012020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C9E88_012020 PF01568 Molydopterin dinucleotide binding domain C9E88_012020 PF04324 BFD-like [2Fe-2S] binding domain C9E88_012025 PF04324 BFD-like [2Fe-2S] binding domain C9E88_012025 PF18267 Rubredoxin NAD+ reductase C-terminal domain C9E88_012025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C9E88_012025 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_012025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C9E88_012030 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_012030 PF04324 BFD-like [2Fe-2S] binding domain C9E88_012030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C9E88_012030 PF18267 Rubredoxin NAD+ reductase C-terminal domain C9E88_012030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C9E88_012035 PF07690 Major Facilitator Superfamily C9E88_012045 PF00005 ABC transporter C9E88_012050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_012050 PF03466 LysR substrate binding domain C9E88_012055 PF01494 FAD binding domain C9E88_012060 PF03561 Allantoicase repeat C9E88_012065 PF04115 Ureidoglycolate lyase C9E88_012070 PF00860 Permease family C9E88_012075 PF00576 HIUase/Transthyretin family C9E88_012090 PF03466 LysR substrate binding domain C9E88_012090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_012095 PF03788 LrgA family C9E88_012100 PF04172 LrgB-like family C9E88_012105 PF00892 EamA-like transporter family C9E88_012110 PF00390 Malic enzyme, N-terminal domain C9E88_012110 PF03949 Malic enzyme, NAD binding domain C9E88_012150 PF00501 AMP-binding enzyme C9E88_012150 PF13193 AMP-binding enzyme C-terminal domain C9E88_012160 PF00392 Bacterial regulatory proteins, gntR family C9E88_012160 PF00155 Aminotransferase class I and II C9E88_012170 PF07690 Major Facilitator Superfamily C9E88_012175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_012175 PF03466 LysR substrate binding domain C9E88_012180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C9E88_012180 PF13378 Enolase C-terminal domain-like C9E88_012185 PF02426 Muconolactone delta-isomerase C9E88_012190 PF04444 Catechol dioxygenase N terminus C9E88_012190 PF00775 Dioxygenase C9E88_012195 PF00355 Rieske [2Fe-2S] domain C9E88_012195 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C9E88_012200 PF00866 Ring hydroxylating beta subunit C9E88_012205 PF00970 Oxidoreductase FAD-binding domain C9E88_012205 PF00111 2Fe-2S iron-sulfur cluster binding domain C9E88_012205 PF00175 Oxidoreductase NAD-binding domain C9E88_012210 PF00106 short chain dehydrogenase C9E88_012215 PF03594 Benzoate membrane transport protein C9E88_012220 PF01144 Coenzyme A transferase C9E88_012225 PF01144 Coenzyme A transferase C9E88_012230 PF00108 Thiolase, N-terminal domain C9E88_012230 PF02803 Thiolase, C-terminal domain C9E88_012235 PF12146 Serine aminopeptidase, S33 C9E88_012240 PF01979 Amidohydrolase family C9E88_012260 PF02608 ABC transporter substrate-binding protein PnrA-like C9E88_012265 PF03171 2OG-Fe(II) oxygenase superfamily C9E88_012265 PF14226 non-haem dioxygenase in morphine synthesis N-terminal C9E88_012270 PF02608 ABC transporter substrate-binding protein PnrA-like C9E88_012275 PF14437 MafB19-like deaminase C9E88_012280 PF00355 Rieske [2Fe-2S] domain C9E88_012285 PF01979 Amidohydrolase family C9E88_012295 PF07690 Major Facilitator Superfamily C9E88_012310 PF02146 Sir2 family C9E88_012320 PF00005 ABC transporter C9E88_012335 PF00893 Small Multidrug Resistance protein C9E88_012340 PF01925 Sulfite exporter TauE/SafE C9E88_012345 PF01613 Flavin reductase like domain C9E88_012350 PF01717 Cobalamin-independent synthase, Catalytic domain C9E88_012360 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_012365 PF02082 Transcriptional regulator C9E88_012380 PF00497 Bacterial extracellular solute-binding proteins, family 3 C9E88_012390 PF01402 Ribbon-helix-helix protein, copG family C9E88_012390 PF08753 NikR C terminal nickel binding domain C9E88_012395 PF10005 zinc-ribbon domain C9E88_012395 PF15887 Putative zinc-binding metallo-peptidase C9E88_012400 PF00881 Nitroreductase family C9E88_012410 PF01638 HxlR-like helix-turn-helix C9E88_012415 PF00106 short chain dehydrogenase C9E88_012445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_012445 PF00289 Biotin carboxylase, N-terminal domain C9E88_012445 PF02785 Biotin carboxylase C-terminal domain C9E88_012460 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C9E88_012465 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_012470 PF00005 ABC transporter C9E88_012475 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C9E88_012480 PF03466 LysR substrate binding domain C9E88_012480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_012485 PF13419 Haloacid dehalogenase-like hydrolase C9E88_012490 PF04545 Sigma-70, region 4 C9E88_012490 PF04542 Sigma-70 region 2 C9E88_012490 PF00140 Sigma-70 factor, region 1.2 C9E88_012490 PF04539 Sigma-70 region 3 C9E88_012495 PF13737 Transposase DDE domain C9E88_012500 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C9E88_012500 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C9E88_012505 PF00108 Thiolase, N-terminal domain C9E88_012505 PF02803 Thiolase, C-terminal domain C9E88_012510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_012510 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_012510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_012510 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_012515 PF08360 QacR-like protein, C-terminal region C9E88_012515 PF00440 Bacterial regulatory proteins, tetR family C9E88_012525 PF00376 MerR family regulatory protein C9E88_012525 PF09278 MerR, DNA binding C9E88_012530 PF00403 Heavy-metal-associated domain C9E88_012535 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_012545 PF00916 Sulfate permease family C9E88_012545 PF01740 STAS domain C9E88_012550 PF00375 Sodium:dicarboxylate symporter family C9E88_012560 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) C9E88_012570 PF00664 ABC transporter transmembrane region C9E88_012570 PF00005 ABC transporter C9E88_012580 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C9E88_012580 PF12833 Helix-turn-helix domain C9E88_012585 PF01597 Glycine cleavage H-protein C9E88_012590 PF00437 Type II/IV secretion system protein C9E88_012595 PF00793 DAHP synthetase I family C9E88_012600 PF00487 Fatty acid desaturase C9E88_012605 PF00175 Oxidoreductase NAD-binding domain C9E88_012610 PF00107 Zinc-binding dehydrogenase C9E88_012610 PF08240 Alcohol dehydrogenase GroES-like domain C9E88_012615 PF13091 PLD-like domain C9E88_012630 PF00392 Bacterial regulatory proteins, gntR family C9E88_012630 PF00155 Aminotransferase class I and II C9E88_012635 PF00892 EamA-like transporter family C9E88_012660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C9E88_012660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C9E88_012665 PF00106 short chain dehydrogenase C9E88_012680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_012680 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_012680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_012685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_012685 PF03466 LysR substrate binding domain C9E88_012690 PF00565 Staphylococcal nuclease homologue C9E88_012700 PF07690 Major Facilitator Superfamily C9E88_012750 PF01292 Prokaryotic cytochrome b561 C9E88_012865 PF07030 Protein of unknown function (DUF1320) C9E88_012925 PF00313 'Cold-shock' DNA-binding domain C9E88_012935 PF00313 'Cold-shock' DNA-binding domain C9E88_013030 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT C9E88_013035 PF00717 Peptidase S24-like C9E88_013045 PF00145 C-5 cytosine-specific DNA methylase C9E88_013080 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain C9E88_013080 PF00589 Phage integrase family C9E88_013095 PF13737 Transposase DDE domain C9E88_013100 PF00330 Aconitase family (aconitate hydratase) C9E88_013100 PF06434 Aconitate hydratase 2 N-terminus C9E88_013100 PF11791 Aconitate B N-terminal domain C9E88_013125 PF00717 Peptidase S24-like C9E88_013130 PF00817 impB/mucB/samB family C9E88_013130 PF13438 Domain of unknown function (DUF4113) C9E88_013130 PF11799 impB/mucB/samB family C-terminal domain C9E88_013130 PF11798 IMS family HHH motif C9E88_013155 PF02601 Exonuclease VII, large subunit C9E88_013155 PF13742 OB-fold nucleic acid binding domain C9E88_013180 PF01103 Surface antigen C9E88_013180 PF07244 Surface antigen variable number repeat C9E88_013180 PF17243 POTRA domain TamA domain 1 C9E88_013185 PF07690 Major Facilitator Superfamily C9E88_013190 PF03232 Ubiquinone biosynthesis protein COQ7 C9E88_013205 PF02152 Dihydroneopterin aldolase C9E88_013210 PF03109 ABC1 family C9E88_013215 PF00899 ThiF family C9E88_013220 PF00440 Bacterial regulatory proteins, tetR family C9E88_013220 PF13977 BetI-type transcriptional repressor, C-terminal C9E88_013225 PF07690 Major Facilitator Superfamily C9E88_013230 PF13193 AMP-binding enzyme C-terminal domain C9E88_013230 PF00501 AMP-binding enzyme C9E88_013235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_013235 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_013235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_013240 PF00106 short chain dehydrogenase C9E88_013245 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C9E88_013245 PF12833 Helix-turn-helix domain C9E88_013255 PF09084 NMT1/THI5 like C9E88_013260 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_013265 PF17827 PrmC N-terminal domain C9E88_013265 PF13847 Methyltransferase domain C9E88_013270 PF00472 RF-1 domain C9E88_013270 PF03462 PCRF domain C9E88_013290 PF00296 Luciferase-like monooxygenase C9E88_013300 PF03618 Kinase/pyrophosphorylase C9E88_013305 PF00391 PEP-utilising enzyme, mobile domain C9E88_013305 PF02896 PEP-utilising enzyme, TIM barrel domain C9E88_013305 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C9E88_013315 PF06481 COX Aromatic Rich Motif C9E88_013315 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C9E88_013320 PF00115 Cytochrome C and Quinol oxidase polypeptide I C9E88_013325 PF00510 Cytochrome c oxidase subunit III C9E88_013330 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C9E88_013335 PF01040 UbiA prenyltransferase family C9E88_013350 PF01250 Ribosomal protein S6 C9E88_013355 PF01084 Ribosomal protein S18 C9E88_013360 PF01281 Ribosomal protein L9, N-terminal domain C9E88_013360 PF03948 Ribosomal protein L9, C-terminal domain C9E88_013365 PF03796 DnaB-like helicase C terminal domain C9E88_013365 PF00772 DnaB-like helicase N terminal domain C9E88_013370 PF00842 Alanine racemase, C-terminal domain C9E88_013370 PF01168 Alanine racemase, N-terminal domain C9E88_013385 PF01841 Transglutaminase-like superfamily C9E88_013385 PF08379 Bacterial transglutaminase-like N-terminal region C9E88_013395 PF14403 Circularly permuted ATP-grasp type 2 C9E88_013405 PF01645 Conserved region in glutamate synthase C9E88_013420 PF01565 FAD binding domain C9E88_013420 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C9E88_013425 PF01451 Low molecular weight phosphotyrosine protein phosphatase C9E88_013430 PF00465 Iron-containing alcohol dehydrogenase C9E88_013440 PF03061 Thioesterase superfamily C9E88_013445 PF12169 DNA polymerase III subunits gamma and tau domain III C9E88_013445 PF12170 DNA polymerase III tau subunit V interacting with alpha C9E88_013445 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C9E88_013475 PF00108 Thiolase, N-terminal domain C9E88_013475 PF02803 Thiolase, C-terminal domain C9E88_013485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_013485 PF03466 LysR substrate binding domain C9E88_013490 PF00923 Transaldolase/Fructose-6-phosphate aldolase C9E88_013495 PF01810 LysE type translocator C9E88_013500 PF00440 Bacterial regulatory proteins, tetR family C9E88_013500 PF08361 MAATS-type transcriptional repressor, C-terminal region C9E88_013505 PF00893 Small Multidrug Resistance protein C9E88_013515 PF00582 Universal stress protein family C9E88_013520 PF00582 Universal stress protein family C9E88_013535 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C9E88_013535 PF01433 Peptidase family M1 domain C9E88_013535 PF11940 Domain of unknown function (DUF3458) Ig-like fold C9E88_013550 PF02110 Hydroxyethylthiazole kinase family C9E88_013565 PF03741 Integral membrane protein TerC family C9E88_013565 PF03471 Transporter associated domain C9E88_013595 PF01274 Malate synthase C9E88_013600 PF03969 AFG1-like ATPase C9E88_013610 PF00743 Flavin-binding monooxygenase-like C9E88_013615 PF03956 Lysine exporter LysO C9E88_013625 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C9E88_013635 PF00216 Bacterial DNA-binding protein C9E88_013640 PF00575 S1 RNA binding domain C9E88_013645 PF02224 Cytidylate kinase C9E88_013655 PF14437 MafB19-like deaminase C9E88_013665 PF03167 Uracil DNA glycosylase superfamily C9E88_013675 PF03934 Type II secretion system (T2SS), protein K C9E88_013680 PF07963 Prokaryotic N-terminal methylation motif C9E88_013680 PF11612 Type II secretion system (T2SS), protein J C9E88_013685 PF02501 Type II secretion system (T2SS), protein I C9E88_013685 PF07963 Prokaryotic N-terminal methylation motif C9E88_013690 PF07963 Prokaryotic N-terminal methylation motif C9E88_013700 PF01026 TatD related DNase C9E88_013710 PF09115 DNA polymerase III, delta subunit, C terminal C9E88_013715 PF02348 Cytidylyltransferase C9E88_013720 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C9E88_013725 PF00005 ABC transporter C9E88_013725 PF00664 ABC transporter transmembrane region C9E88_013735 PF01618 MotA/TolQ/ExbB proton channel family C9E88_013740 PF02195 ParB-like nuclease domain C9E88_013740 PF17762 HTH domain found in ParB protein C9E88_013745 PF13614 AAA domain C9E88_013750 PF02527 rRNA small subunit methyltransferase G C9E88_013755 PF00483 Nucleotidyl transferase C9E88_013760 PF01636 Phosphotransferase enzyme family C9E88_013765 PF03968 OstA-like protein C9E88_013765 PF04453 LPS transport system D C9E88_013770 PF00639 PPIC-type PPIASE domain C9E88_013770 PF09312 SurA N-terminal domain C9E88_013775 PF17209 Hfq protein C9E88_013785 PF01119 DNA mismatch repair protein, C-terminal domain C9E88_013785 PF08676 MutL C terminal dimerisation domain C9E88_013790 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C9E88_013795 PF00849 RNA pseudouridylate synthase C9E88_013810 PF01479 S4 domain C9E88_013810 PF00849 RNA pseudouridylate synthase C9E88_013815 PF04284 Protein of unknown function (DUF441) C9E88_013830 PF14493 Helix-turn-helix domain C9E88_013830 PF05970 PIF1-like helicase C9E88_013845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C9E88_013845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C9E88_013850 PF11898 Domain of unknown function (DUF3418) C9E88_013850 PF00271 Helicase conserved C-terminal domain C9E88_013850 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C9E88_013850 PF00270 DEAD/DEAH box helicase C9E88_013850 PF04408 Helicase associated domain (HA2) C9E88_013855 PF00578 AhpC/TSA family C9E88_013855 PF10417 C-terminal domain of 1-Cys peroxiredoxin C9E88_013875 PF13192 Thioredoxin domain C9E88_013875 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_013890 PF01810 LysE type translocator C9E88_013900 PF02075 Crossover junction endodeoxyribonuclease RuvC C9E88_013905 PF00708 Acylphosphatase C9E88_013910 PF01256 Carbohydrate kinase C9E88_013910 PF03853 YjeF-related protein N-terminus C9E88_013915 PF08331 Domain of unknown function (DUF1730) C9E88_013920 PF04055 Radical SAM superfamily C9E88_013920 PF06968 Biotin and Thiamin Synthesis associated domain C9E88_013940 PF03441 FAD binding domain of DNA photolyase C9E88_013940 PF00875 DNA photolyase C9E88_013975 PF13737 Transposase DDE domain C9E88_013985 PF01553 Acyltransferase C9E88_013990 PF01709 Transcriptional regulator C9E88_014010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C9E88_014010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_014020 PF00296 Luciferase-like monooxygenase C9E88_014035 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_014040 PF01926 50S ribosome-binding GTPase C9E88_014040 PF06071 Protein of unknown function (DUF933) C9E88_014060 PF00027 Cyclic nucleotide-binding domain C9E88_014060 PF13545 Crp-like helix-turn-helix domain C9E88_014070 PF03591 AzlC protein C9E88_014080 PF02222 ATP-grasp domain C9E88_014085 PF08335 GlnD PII-uridylyltransferase C9E88_014085 PF01966 HD domain C9E88_014085 PF01909 Nucleotidyltransferase domain C9E88_014090 PF00155 Aminotransferase class I and II C9E88_014105 PF00255 Glutathione peroxidase C9E88_014110 PF01641 SelR domain C9E88_014115 PF00155 Aminotransferase class I and II C9E88_014120 PF00849 RNA pseudouridylate synthase C9E88_014135 PF00768 D-alanyl-D-alanine carboxypeptidase C9E88_014135 PF07943 Penicillin-binding protein 5, C-terminal domain C9E88_014140 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_014145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_014160 PF01435 Peptidase family M48 C9E88_014165 PF00709 Adenylosuccinate synthetase C9E88_014170 PF13393 Histidyl-tRNA synthetase C9E88_014180 PF03591 AzlC protein C9E88_014195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C9E88_014195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C9E88_014200 PF02272 DHHA1 domain C9E88_014200 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C9E88_014200 PF01411 tRNA synthetases class II (A) C9E88_014205 PF01842 ACT domain C9E88_014205 PF13840 ACT domain C9E88_014205 PF00696 Amino acid kinase family C9E88_014210 PF02599 Global regulator protein family C9E88_014215 PF01351 Ribonuclease HII C9E88_014250 PF00860 Permease family C9E88_014255 PF03883 Peroxide stress protein YaaA C9E88_014275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C9E88_014280 PF00155 Aminotransferase class I and II C9E88_014285 PF01817 Chorismate mutase type II C9E88_014285 PF00800 Prephenate dehydratase C9E88_014285 PF01842 ACT domain C9E88_014290 PF01965 DJ-1/PfpI family C9E88_014295 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_014295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_014295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_014300 PF00375 Sodium:dicarboxylate symporter family C9E88_014305 PF00591 Glycosyl transferase family, a/b domain C9E88_014305 PF02885 Glycosyl transferase family, helical bundle domain C9E88_014310 PF07023 Protein of unknown function (DUF1315) C9E88_014315 PF01513 ATP-NAD kinase C9E88_014320 PF14814 Bifunctional transglycosylase second domain C9E88_014320 PF00905 Penicillin binding protein transpeptidase domain C9E88_014320 PF00912 Transglycosylase C9E88_014330 PF00293 NUDIX domain C9E88_014340 PF08521 Two-component sensor kinase N-terminal C9E88_014340 PF00512 His Kinase A (phospho-acceptor) domain C9E88_014340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_014345 PF00072 Response regulator receiver domain C9E88_014345 PF00486 Transcriptional regulatory protein, C terminal C9E88_014355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C9E88_014355 PF00437 Type II/IV secretion system protein C9E88_014365 PF18389 TrmO C-terminal domain C9E88_014365 PF01980 tRNA-methyltransferase O C9E88_014370 PF00175 Oxidoreductase NAD-binding domain C9E88_014370 PF00970 Oxidoreductase FAD-binding domain C9E88_014405 PF04717 Type VI secretion system, phage-baseplate injector C9E88_014415 PF13411 MerR HTH family regulatory protein C9E88_014420 PF03358 NADPH-dependent FMN reductase C9E88_014425 PF01758 Sodium Bile acid symporter family C9E88_014430 PF01451 Low molecular weight phosphotyrosine protein phosphatase C9E88_014435 PF01022 Bacterial regulatory protein, arsR family C9E88_014445 PF12838 4Fe-4S dicluster domain C9E88_014450 PF13192 Thioredoxin domain C9E88_014450 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_014460 PF05816 Toxic anion resistance protein (TelA) C9E88_014475 PF14760 Rnk N-terminus C9E88_014475 PF01272 Transcription elongation factor, GreA/GreB, C-term C9E88_014480 PF00464 Serine hydroxymethyltransferase C9E88_014510 PF12804 MobA-like NTP transferase domain C9E88_014510 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_014510 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_014515 PF13784 Fic/DOC family N-terminal C9E88_014515 PF02661 Fic/DOC family C9E88_014525 PF03358 NADPH-dependent FMN reductase C9E88_014530 PF01758 Sodium Bile acid symporter family C9E88_014540 PF01022 Bacterial regulatory protein, arsR family C9E88_014555 PF03960 ArsC family C9E88_014570 PF00581 Rhodanese-like domain C9E88_014575 PF01925 Sulfite exporter TauE/SafE C9E88_014580 PF00753 Metallo-beta-lactamase superfamily C9E88_014590 PF04143 Sulphur transport C9E88_014600 PF00005 ABC transporter C9E88_014605 PF02687 FtsX-like permease family C9E88_014605 PF12704 MacB-like periplasmic core domain C9E88_014610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_014615 PF13784 Fic/DOC family N-terminal C9E88_014615 PF02661 Fic/DOC family C9E88_014650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C9E88_014650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_014655 PF10396 GTP-binding protein TrmE N-terminus C9E88_014655 PF01926 50S ribosome-binding GTPase C9E88_014655 PF12631 MnmE helical domain C9E88_014685 PF02661 Fic/DOC family C9E88_014685 PF13784 Fic/DOC family N-terminal C9E88_014730 PF13737 Transposase DDE domain C9E88_014745 PF13356 Arm DNA-binding domain C9E88_014745 PF00589 Phage integrase family C9E88_014755 PF00005 ABC transporter C9E88_014760 PF01061 ABC-2 type transporter C9E88_014765 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term C9E88_014765 PF14489 QueF-like protein C9E88_014780 PF13406 Transglycosylase SLT domain C9E88_014785 PF03330 Lytic transglycolase C9E88_014785 PF05036 Sporulation related domain C9E88_014815 PF00889 Elongation factor TS C9E88_014820 PF00318 Ribosomal protein S2 C9E88_014825 PF00557 Metallopeptidase family M24 C9E88_014855 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) C9E88_014860 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C9E88_014875 PF07650 KH domain C9E88_014875 PF01926 50S ribosome-binding GTPase C9E88_014880 PF14622 Ribonuclease-III-like C9E88_014880 PF00035 Double-stranded RNA binding motif C9E88_014890 PF10502 Signal peptidase, peptidase S26 C9E88_014895 PF00009 Elongation factor Tu GTP binding domain C9E88_014895 PF00679 Elongation factor G C-terminus C9E88_014895 PF03144 Elongation factor Tu domain 2 C9E88_014895 PF06421 GTP-binding protein LepA C-terminus C9E88_014905 PF13180 PDZ domain C9E88_014910 PF02910 Fumarate reductase flavoprotein C-term C9E88_014910 PF00890 FAD binding domain C9E88_014930 PF02223 Thymidylate kinase C9E88_014935 PF02618 YceG-like family C9E88_014940 PF01063 Amino-transferase class IV C9E88_014960 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_014965 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_014970 PF12857 TOBE-like domain C9E88_014970 PF00005 ABC transporter C9E88_014975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_014975 PF03466 LysR substrate binding domain C9E88_014990 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_014990 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_014990 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C9E88_014995 PF04055 Radical SAM superfamily C9E88_015000 PF06508 Queuosine biosynthesis protein QueC C9E88_015010 PF00578 AhpC/TSA family C9E88_015015 PF01810 LysE type translocator C9E88_015020 PF03466 LysR substrate binding domain C9E88_015020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_015025 PF04264 YceI-like domain C9E88_015030 PF00293 NUDIX domain C9E88_015030 PF01467 Cytidylyltransferase-like C9E88_015035 PF00378 Enoyl-CoA hydratase/isomerase C9E88_015040 PF00881 Nitroreductase family C9E88_015045 PF01784 NIF3 (NGG1p interacting factor 3) C9E88_015070 PF02769 AIR synthase related protein, C-terminal domain C9E88_015070 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C9E88_015070 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C9E88_015075 PF01483 Proprotein convertase P-domain C9E88_015075 PF04389 Peptidase family M28 C9E88_015080 PF00884 Sulfatase C9E88_015085 PF01966 HD domain C9E88_015095 PF07499 RuvA, C-terminal domain C9E88_015095 PF01330 RuvA N terminal domain C9E88_015100 PF17864 RuvB AAA lid domain C9E88_015100 PF05496 Holliday junction DNA helicase RuvB P-loop domain C9E88_015100 PF05491 RuvB C-terminal winged helix domain C9E88_015110 PF03061 Thioesterase superfamily C9E88_015115 PF01618 MotA/TolQ/ExbB proton channel family C9E88_015120 PF02472 Biopolymer transport protein ExbD/TolR C9E88_015130 PF07676 WD40-like Beta Propeller Repeat C9E88_015130 PF04052 TolB amino-terminal domain C9E88_015135 PF00691 OmpA family C9E88_015145 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C9E88_015150 PF00588 SpoU rRNA Methylase family C9E88_015150 PF08032 RNA 2'-O ribose methyltransferase substrate binding C9E88_015180 PF00308 Bacterial dnaA protein C9E88_015180 PF11638 DnaA N-terminal domain C9E88_015180 PF08299 Bacterial dnaA protein helix-turn-helix C9E88_015185 PF01594 AI-2E family transporter C9E88_015190 PF02769 AIR synthase related protein, C-terminal domain C9E88_015190 PF00586 AIR synthase related protein, N-terminal domain C9E88_015195 PF00551 Formyl transferase C9E88_015205 PF06965 Na+/H+ antiporter 1 C9E88_015205 PF01343 Peptidase family S49 C9E88_015215 PF13567 Domain of unknown function (DUF4131) C9E88_015215 PF03772 Competence protein C9E88_015215 PF00753 Metallo-beta-lactamase superfamily C9E88_015220 PF00005 ABC transporter C9E88_015225 PF12704 MacB-like periplasmic core domain C9E88_015225 PF02687 FtsX-like permease family C9E88_015240 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 C9E88_015250 PF00266 Aminotransferase class-V C9E88_015260 PF13533 Biotin-lipoyl like C9E88_015275 PF00375 Sodium:dicarboxylate symporter family C9E88_015290 PF03989 DNA gyrase C-terminal domain, beta-propeller C9E88_015290 PF00521 DNA gyrase/topoisomerase IV, subunit A C9E88_015295 PF01012 Electron transfer flavoprotein domain C9E88_015295 PF00766 Electron transfer flavoprotein FAD-binding domain C9E88_015300 PF01012 Electron transfer flavoprotein domain C9E88_015305 PF01810 LysE type translocator C9E88_015310 PF01037 Lrp/AsnC ligand binding domain C9E88_015320 PF01425 Amidase C9E88_015325 PF00589 Phage integrase family C9E88_015325 PF02899 Phage integrase, N-terminal SAM-like domain C9E88_015335 PF01678 Diaminopimelate epimerase C9E88_015340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C9E88_015340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C9E88_015370 PF01464 Transglycosylase SLT domain C9E88_015370 PF10145 Phage-related minor tail protein C9E88_015370 PF01551 Peptidase family M23 C9E88_015385 PF10145 Phage-related minor tail protein C9E88_015385 PF01464 Transglycosylase SLT domain C9E88_015385 PF01551 Peptidase family M23 C9E88_015400 PF00437 Type II/IV secretion system protein C9E88_015405 PF03743 Bacterial conjugation TrbI-like protein C9E88_015450 PF13614 AAA domain C9E88_015520 PF17841 BID domain of Bartonella effector protein (Bep) C9E88_015520 PF01443 Viral (Superfamily 1) RNA helicase C9E88_015520 PF03389 MobA/MobL family C9E88_015545 PF01636 Phosphotransferase enzyme family C9E88_015550 PF00665 Integrase core domain C9E88_015550 PF13936 Helix-turn-helix domain C9E88_015555 PF00753 Metallo-beta-lactamase superfamily C9E88_015565 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C9E88_015570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C9E88_015575 PF03091 CutA1 divalent ion tolerance protein C9E88_015580 PF00166 Chaperonin 10 Kd subunit C9E88_015585 PF00118 TCP-1/cpn60 chaperonin family C9E88_015605 PF13936 Helix-turn-helix domain C9E88_015605 PF00665 Integrase core domain C9E88_015610 PF02796 Helix-turn-helix domain of resolvase C9E88_015610 PF00239 Resolvase, N terminal domain C9E88_015625 PF00565 Staphylococcal nuclease homologue C9E88_015640 PF02142 MGS-like domain C9E88_015640 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C9E88_015640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_015645 PF01272 Transcription elongation factor, GreA/GreB, C-term C9E88_015645 PF03449 Transcription elongation factor, N-terminal C9E88_015650 PF04072 Leucine carboxyl methyltransferase C9E88_015655 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_015675 PF00037 4Fe-4S binding domain C9E88_015680 PF01467 Cytidylyltransferase-like C9E88_015685 PF01668 SmpB protein C9E88_015705 PF01479 S4 domain C9E88_015705 PF00849 RNA pseudouridylate synthase C9E88_015710 PF13525 Outer membrane lipoprotein C9E88_015715 PF01807 CHC2 zinc finger C9E88_015715 PF08275 DNA primase catalytic core, N-terminal domain C9E88_015715 PF08278 DNA primase DnaG DnaB-binding C9E88_015715 PF10410 DnaB-helicase binding domain of primase C9E88_015720 PF01488 Shikimate / quinate 5-dehydrogenase C9E88_015720 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C9E88_015720 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C9E88_015730 PF03550 Outer membrane lipoprotein LolB C9E88_015735 PF08544 GHMP kinases C terminal C9E88_015735 PF00288 GHMP kinases N terminal domain C9E88_015760 PF14572 Phosphoribosyl synthetase-associated domain C9E88_015760 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C9E88_015765 PF01386 Ribosomal L25p family C9E88_015770 PF01195 Peptidyl-tRNA hydrolase C9E88_015775 PF02261 Aspartate decarboxylase C9E88_015790 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C9E88_015820 PF09335 SNARE associated Golgi protein C9E88_015840 PF04542 Sigma-70 region 2 C9E88_015840 PF03979 Sigma-70 factor, region 1.1 C9E88_015840 PF00140 Sigma-70 factor, region 1.2 C9E88_015840 PF04539 Sigma-70 region 3 C9E88_015840 PF04545 Sigma-70, region 4 C9E88_015840 PF04546 Sigma-70, non-essential region C9E88_015845 PF04359 Protein of unknown function (DUF493) C9E88_015850 PF03099 Biotin/lipoate A/B protein ligase family C9E88_015860 PF00465 Iron-containing alcohol dehydrogenase C9E88_015865 PF13520 Amino acid permease C9E88_015875 PF00588 SpoU rRNA Methylase family C9E88_015880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C9E88_015880 PF14824 Sirohaem biosynthesis protein central C9E88_015880 PF10414 Sirohaem synthase dimerisation region C9E88_015885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C9E88_015885 PF02403 Seryl-tRNA synthetase N-terminal domain C9E88_015895 PF03548 Outer membrane lipoprotein carrier protein LolA C9E88_015900 PF01016 Ribosomal L27 protein C9E88_015905 PF00829 Ribosomal prokaryotic L21 protein C9E88_015910 PF00348 Polyprenyl synthetase C9E88_015920 PF01569 PAP2 superfamily C9E88_015925 PF00529 HlyD membrane-fusion protein of T1SS C9E88_015925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_015930 PF00873 AcrB/AcrD/AcrF family C9E88_015935 PF02321 Outer membrane efflux protein C9E88_015940 PF01906 Putative heavy-metal-binding C9E88_015945 PF01906 Putative heavy-metal-binding C9E88_015965 PF00133 tRNA synthetases class I (I, L, M and V) C9E88_015965 PF10458 Valyl tRNA synthetase tRNA binding arm C9E88_015965 PF08264 Anticodon-binding domain of tRNA C9E88_015970 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C9E88_015990 PF00990 Diguanylate cyclase, GGDEF domain C9E88_015990 PF08448 PAS fold C9E88_015995 PF00497 Bacterial extracellular solute-binding proteins, family 3 C9E88_016000 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_016005 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_016010 PF00005 ABC transporter C9E88_016015 PF00909 Ammonium Transporter Family C9E88_016030 PF00512 His Kinase A (phospho-acceptor) domain C9E88_016030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_016030 PF08521 Two-component sensor kinase N-terminal C9E88_016035 PF00486 Transcriptional regulatory protein, C terminal C9E88_016035 PF00072 Response regulator receiver domain C9E88_016040 PF08019 Phosphoethanolamine transferase EptA/EptB C9E88_016040 PF00884 Sulfatase C9E88_016055 PF01734 Patatin-like phospholipase C9E88_016065 PF01145 SPFH domain / Band 7 family C9E88_016070 PF00474 Sodium:solute symporter family C9E88_016075 PF00348 Polyprenyl synthetase C9E88_016080 PF04303 PrpF protein C9E88_016085 PF00324 Amino acid permease C9E88_016115 PF01507 Phosphoadenosine phosphosulfate reductase family C9E88_016120 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain C9E88_016120 PF06974 Protein of unknown function (DUF1298) C9E88_016125 PF10150 Ribonuclease E/G family C9E88_016125 PF00575 S1 RNA binding domain C9E88_016130 PF02545 Maf-like protein C9E88_016135 PF04093 rod shape-determining protein MreD C9E88_016140 PF04085 rod shape-determining protein MreC C9E88_016150 PF02686 Glu-tRNAGln amidotransferase C subunit C9E88_016155 PF01425 Amidase C9E88_016160 PF02934 GatB/GatE catalytic domain C9E88_016160 PF02637 GatB domain C9E88_016190 PF05992 SbmA/BacA-like family C9E88_016230 PF01235 Sodium:alanine symporter family C9E88_016240 PF18073 Rubredoxin metal binding domain C9E88_016250 PF08238 Sel1 repeat C9E88_016265 PF05221 S-adenosyl-L-homocysteine hydrolase C9E88_016265 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C9E88_016270 PF02219 Methylenetetrahydrofolate reductase C9E88_016275 PF04452 RNA methyltransferase C9E88_016280 PF00990 Diguanylate cyclase, GGDEF domain C9E88_016280 PF00563 EAL domain C9E88_016280 PF00498 FHA domain C9E88_016285 PF03949 Malic enzyme, NAD binding domain C9E88_016285 PF01515 Phosphate acetyl/butaryl transferase C9E88_016285 PF00390 Malic enzyme, N-terminal domain C9E88_016290 PF12627 Probable RNA and SrmB- binding site of polymerase A C9E88_016290 PF01743 Poly A polymerase head domain C9E88_016300 PF00152 tRNA synthetases class II (D, K and N) C9E88_016305 PF11890 Domain of unknown function (DUF3410) C9E88_016305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_016305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_016310 PF00596 Class II Aldolase and Adducin N-terminal domain C9E88_016325 PF03449 Transcription elongation factor, N-terminal C9E88_016325 PF01272 Transcription elongation factor, GreA/GreB, C-term C9E88_016330 PF03466 LysR substrate binding domain C9E88_016330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_016340 PF00497 Bacterial extracellular solute-binding proteins, family 3 C9E88_016340 PF01464 Transglycosylase SLT domain C9E88_016350 PF01171 PP-loop family C9E88_016355 PF10145 Phage-related minor tail protein C9E88_016355 PF01464 Transglycosylase SLT domain C9E88_016355 PF01551 Peptidase family M23 C9E88_016360 PF01435 Peptidase family M48 C9E88_016370 PF00571 CBS domain C9E88_016370 PF03448 MgtE intracellular N domain C9E88_016370 PF01769 Divalent cation transporter C9E88_016375 PF00873 AcrB/AcrD/AcrF family C9E88_016390 PF01219 Prokaryotic diacylglycerol kinase C9E88_016395 PF00463 Isocitrate lyase family C9E88_016400 PF03466 LysR substrate binding domain C9E88_016400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_016405 PF00571 CBS domain C9E88_016405 PF03471 Transporter associated domain C9E88_016405 PF01595 Cyclin M transmembrane N-terminal domain C9E88_016415 PF03600 Citrate transporter C9E88_016430 PF16655 PhoD-like phosphatase, N-terminal domain C9E88_016430 PF09423 PhoD-like phosphatase C9E88_016445 PF00809 Pterin binding enzyme C9E88_016450 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_016450 PF17862 AAA+ lid domain C9E88_016450 PF06480 FtsH Extracellular C9E88_016450 PF01434 Peptidase family M41 C9E88_016455 PF01728 FtsJ-like methyltransferase C9E88_016460 PF01985 CRS1 / YhbY (CRM) domain C9E88_016475 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C9E88_016475 PF00117 Glutamine amidotransferase class-I C9E88_016480 PF13737 Transposase DDE domain C9E88_016485 PF01636 Phosphotransferase enzyme family C9E88_016490 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase C9E88_016500 PF05973 Phage derived protein Gp49-like (DUF891) C9E88_016515 PF00239 Resolvase, N terminal domain C9E88_016515 PF02796 Helix-turn-helix domain of resolvase C9E88_016520 PF01636 Phosphotransferase enzyme family C9E88_016540 PF02909 Tetracyclin repressor-like, C-terminal domain C9E88_016540 PF00440 Bacterial regulatory proteins, tetR family C9E88_016545 PF07690 Major Facilitator Superfamily C9E88_016555 PF01051 Initiator Replication protein C9E88_016565 PF01443 Viral (Superfamily 1) RNA helicase C9E88_016565 PF03389 MobA/MobL family C9E88_016565 PF17841 BID domain of Bartonella effector protein (Bep) C9E88_016590 PF00809 Pterin binding enzyme C9E88_016595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C9E88_016595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C9E88_016595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C9E88_016595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C9E88_016600 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) C9E88_016600 PF08463 EcoEI R protein C-terminal C9E88_016600 PF00271 Helicase conserved C-terminal domain C9E88_016600 PF04851 Type III restriction enzyme, res subunit C9E88_016610 PF13614 AAA domain C9E88_016615 PF00717 Peptidase S24-like C9E88_016615 PF01726 LexA DNA binding domain C9E88_016630 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system C9E88_016640 PF00440 Bacterial regulatory proteins, tetR family C9E88_016640 PF02909 Tetracyclin repressor-like, C-terminal domain C9E88_016645 PF07690 Major Facilitator Superfamily C9E88_016655 PF01051 Initiator Replication protein C9E88_016675 PF16793 RepB DNA-primase from phage plasmid C9E88_016675 PF03389 MobA/MobL family C9E88_016685 PF01051 Initiator Replication protein C9E88_016725 PF01076 Plasmid recombination enzyme