locus-tag	class	description
DJ533_00075	COG3617	BRO family, N-terminal domain
DJ533_00365	COG2894	cell division
DJ533_00480	COG4115	mRNA cleavage
DJ533_00550	COG2076	Multidrug Resistance protein
DJ533_00750	COG1192	Involved in chromosome partitioning
DJ533_00755	COG1475	DNA binding
DJ533_00915	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DJ533_00965	COG2009	succinate dehydrogenase
DJ533_00985	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DJ533_00995	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DJ533_01035	COG0625	glutathione transferase activity
DJ533_01040	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ533_01100	COG3293	Transposase
DJ533_01125	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DJ533_01220	COG2826	transposase and inactivated derivatives, IS30 family
DJ533_01230	COG2826	transposase and inactivated derivatives, IS30 family
DJ533_01400	COG0318	PFAM AMP-dependent synthetase and ligase
DJ533_01465	COG0084	hydrolase, TatD family'
DJ533_01525	COG1525	nuclease
DJ533_01535	COG2189	Belongs to the N(4) N(6)-methyltransferase family
DJ533_01580	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DJ533_01740	COG0860	N-Acetylmuramoyl-L-alanine amidase
DJ533_01775	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJ533_01780	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ533_01785	COG4569	acetaldehyde dehydrogenase (acetylating) activity
DJ533_01790	COG3971	2-oxopent-4-enoate hydratase activity
DJ533_01860	COG3316	Transposase and inactivated derivatives
DJ533_01895	COG0789	Transcriptional regulator
DJ533_01930	COG0789	Transcriptional regulator
DJ533_01990	COG3316	Transposase and inactivated derivatives
DJ533_02005	COG0210	DNA helicase
DJ533_02025	COG0583	DNA-binding transcription factor activity
DJ533_02030	COG2814	Major facilitator Superfamily
DJ533_02060	COG1012	belongs to the aldehyde dehydrogenase family
DJ533_02075	COG3316	Transposase and inactivated derivatives
DJ533_02085	COG3316	Transposase and inactivated derivatives
DJ533_02100	COG1538	Outer membrane efflux protein
DJ533_02105	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ533_02115	COG0745	RESPONSE REGULATOR receiver
DJ533_02120	COG2205	protein histidine kinase activity
DJ533_02135	COG3173	Aminoglycoside phosphotransferase
DJ533_02150	COG2801	Transposase and inactivated derivatives
DJ533_02170	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJ533_02175	COG3657	addiction module killer protein
DJ533_02185	COG2801	Transposase and inactivated derivatives
DJ533_02215	COG2801	Transposase and inactivated derivatives
DJ533_02260	COG2801	Transposase and inactivated derivatives
DJ533_02280	COG3316	Transposase and inactivated derivatives
DJ533_02315	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DJ533_02395	COG4783	chaperone-mediated protein folding
DJ533_02510	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DJ533_02515	COG0592	DNA-directed DNA polymerase activity
DJ533_02525	COG0187	DNA topoisomerase II activity
DJ533_02535	COG0488	(ABC) transporter
DJ533_02545	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DJ533_02550	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
DJ533_02580	COG0737	Belongs to the 5'-nucleotidase family
DJ533_02615	COG2814	Major facilitator Superfamily
DJ533_02630	COG1012	belongs to the aldehyde dehydrogenase family
DJ533_02635	COG3738	Protein conserved in bacteria
DJ533_02640	COG0733	neurotransmitter:sodium symporter activity
DJ533_02650	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DJ533_02665	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJ533_02665	COG2885	chlorophyll binding
DJ533_02680	COG0129	dihydroxy-acid dehydratase activity
DJ533_02725	COG2814	Major facilitator Superfamily
DJ533_02730	COG0583	DNA-binding transcription factor activity
DJ533_02745	COG1064	alcohol dehydrogenase
DJ533_02750	COG2818	Glycosylase
DJ533_02760	COG0739	heme binding
DJ533_02765	COG1194	a g-specific adenine glycosylase
DJ533_02780	COG5487	UPF0391 membrane protein
DJ533_02785	COG2983	Belongs to the UPF0260 family
DJ533_02790	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DJ533_02805	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJ533_02810	COG2814	Major facilitator Superfamily
DJ533_02815	COG1335	isochorismatase
DJ533_02820	COG0385	Bile acid
DJ533_02825	COG1683	Conserved Protein
DJ533_02895	COG2259	Doxx family
DJ533_02900	COG0586	Pfam SNARE associated Golgi protein
DJ533_02915	COG1192	Involved in chromosome partitioning
DJ533_02925	COG0271	Belongs to the BolA IbaG family
DJ533_02950	COG0583	DNA-binding transcription factor activity
DJ533_02980	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DJ533_02980	COG0519	Catalyzes the synthesis of GMP from XMP
DJ533_03000	COG0189	ligase activity
DJ533_03010	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DJ533_03020	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DJ533_03035	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
DJ533_03060	COG2119	membrane
DJ533_03065	COG0426	domain, Protein
DJ533_03065	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJ533_03100	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DJ533_03120	COG1902	pentaerythritol trinitrate reductase activity
DJ533_03125	COG3706	GGDEF domain
DJ533_03140	COG1393	Belongs to the ArsC family
DJ533_03145	COG0708	Exodeoxyribonuclease III
DJ533_03185	COG0784	Response regulator, receiver
DJ533_03185	COG2205	protein histidine kinase activity
DJ533_03190	COG3162	membrane
DJ533_03300	COG1002	Type II restriction enzyme, methylase subunits
DJ533_03305	COG1061	Type III restriction enzyme res subunit
DJ533_03315	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DJ533_03350	COG0582	viral genome integration into host DNA
DJ533_03360	COG3158	transport of potassium into the cell
DJ533_03380	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DJ533_03400	COG1519	Transferase
DJ533_03405	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DJ533_03410	COG0668	transmembrane transport
DJ533_03415	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DJ533_03460	COG0431	NADPH-dependent FMN reductase
DJ533_03485	COG0281	malic enzyme
DJ533_03500	COG2837	iron assimilation
DJ533_03505	COG1280	lysine exporter protein (LysE YggA)
DJ533_03520	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJ533_03525	COG1121	(ABC) transporter
DJ533_03560	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DJ533_03565	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DJ533_03575	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DJ533_03595	COG0386	Belongs to the glutathione peroxidase family
DJ533_03610	COG3706	GGDEF domain
DJ533_03620	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DJ533_03625	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DJ533_03625	COG0352	thiamine-phosphate diphosphorylase activity
DJ533_03625	COG0351	phosphomethylpyrimidine kinase
DJ533_03635	COG2814	Major facilitator Superfamily
DJ533_03655	COG0450	alkyl hydroperoxide reductase
DJ533_03660	COG0583	DNA-binding transcription factor activity
DJ533_03665	COG1335	isochorismatase
DJ533_03675	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
DJ533_03720	COG4452	Inner membrane protein CreD
DJ533_03725	COG2205	protein histidine kinase activity
DJ533_03735	COG0745	RESPONSE REGULATOR receiver
DJ533_03740	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DJ533_03765	COG1253	flavin adenine dinucleotide binding
DJ533_03815	COG0070	glutamate synthase
DJ533_03815	COG0069	glutamate synthase activity
DJ533_03815	COG0067	glutamate synthase
DJ533_03820	COG0493	'glutamate synthase
DJ533_03835	COG2212	antiporter activity
DJ533_03845	COG0651	ATP synthesis coupled electron transport
DJ533_03850	COG1006	Multisubunit Na H antiporter MnhC subunit
DJ533_03855	COG2111	Na H antiporter
DJ533_03855	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DJ533_03880	COG2056	Na+-H+ antiporter family
DJ533_03895	COG0326	Molecular chaperone. Has ATPase activity
DJ533_03915	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
DJ533_03935	COG0183	Belongs to the thiolase family
DJ533_03940	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ533_03940	COG1024	Enoyl-CoA hydratase
DJ533_03980	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DJ533_03990	COG1132	(ABC) transporter
DJ533_04000	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJ533_04040	COG0606	chelatase, subunit chli
DJ533_04045	COG0084	hydrolase, TatD family'
DJ533_04080	COG0606	chelatase, subunit chli
DJ533_04090	COG0347	Belongs to the P(II) protein family
DJ533_04095	COG0004	ammonium transporteR
DJ533_04105	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJ533_04105	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJ533_04120	COG0586	Pfam SNARE associated Golgi protein
DJ533_04145	COG0795	lipopolysaccharide-transporting ATPase activity
DJ533_04150	COG0795	lipopolysaccharide-transporting ATPase activity
DJ533_04155	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DJ533_04160	COG3409	Peptidoglycan-binding domain 1 protein
DJ533_04160	COG0793	Belongs to the peptidase S41A family
DJ533_04175	COG2197	response regulator
DJ533_04190	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DJ533_04200	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DJ533_04205	COG4974	Belongs to the 'phage' integrase family
DJ533_04230	COG0772	Belongs to the SEDS family
DJ533_04240	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DJ533_04245	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DJ533_04250	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DJ533_04255	COG0494	nUDIX hydrolase
DJ533_04280	COG0704	Plays a role in the regulation of phosphate uptake
DJ533_04295	COG3275	phosphorelay sensor kinase activity
DJ533_04305	COG0181	hydroxymethylbilane synthase activity
DJ533_04325	COG0824	Thioesterase
DJ533_04350	COG1716	ATPase activity
DJ533_04355	COG0546	phosphoglycolate phosphatase activity
DJ533_04410	COG0081	regulation of translation
DJ533_04415	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DJ533_04425	COG0085	RNA polymerase activity
DJ533_04440	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DJ533_04475	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DJ533_04510	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
DJ533_04515	COG1074	ATP-dependent DNA helicase activity
DJ533_04520	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJ533_04535	COG1185	polyribonucleotide nucleotidyltransferase activity
DJ533_04540	COG2841	Protein conserved in bacteria
DJ533_04545	COG0598	Magnesium transport protein CorA
DJ533_04555	COG0789	Transcriptional regulator
DJ533_04560	COG0484	heat shock protein binding
DJ533_04565	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DJ533_04575	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DJ533_04600	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DJ533_04605	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DJ533_04610	COG4535	Mg2 and Co2 transporter CorC
DJ533_04615	COG0425	Belongs to the sulfur carrier protein TusA family
DJ533_04625	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
DJ533_04625	COG0644	oxidoreductase
DJ533_04635	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DJ533_04650	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ533_04655	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
DJ533_04690	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DJ533_04695	COG0254	rRNA binding
DJ533_04700	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DJ533_04710	COG0534	Mate efflux family protein
DJ533_04725	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJ533_04740	COG1960	acyl-CoA dehydrogenase activity
DJ533_04765	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJ533_04770	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DJ533_04790	COG0513	Belongs to the DEAD box helicase family
DJ533_04795	COG1127	ABC transporter
DJ533_04800	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DJ533_04805	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DJ533_04825	COG0598	Magnesium transport protein CorA
DJ533_04835	COG0494	nUDIX hydrolase
DJ533_04840	COG1040	competence protein
DJ533_04850	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DJ533_04865	COG2937	Belongs to the GPAT DAPAT family
DJ533_04870	COG1946	Acyl-CoA thioesterase
DJ533_04875	COG1301	dicarboxylic acid transport
DJ533_04895	COG1959	2 iron, 2 sulfur cluster binding
DJ533_04900	COG1017	nitric oxide dioxygenase activity
DJ533_04900	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ533_04905	COG0433	COG0433 Predicted ATPase
DJ533_04920	COG0051	transcription antitermination factor activity, RNA binding
DJ533_04925	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DJ533_04930	COG0088	Forms part of the polypeptide exit tunnel
DJ533_04975	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DJ533_04985	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DJ533_04990	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DJ533_04995	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DJ533_05000	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DJ533_05010	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DJ533_05030	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DJ533_05035	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DJ533_05040	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DJ533_05055	COG0203	ribosomal protein L17
DJ533_05060	COG2072	flavoprotein involved in K transport
DJ533_05065	COG1960	acyl-CoA dehydrogenase activity
DJ533_05070	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DJ533_05100	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
DJ533_05105	COG0339	signal peptide processing
DJ533_05125	COG0557	exoribonuclease II activity
DJ533_05165	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJ533_05180	COG1295	ribonuclease BN
DJ533_05195	COG1946	Acyl-CoA thioesterase
DJ533_05225	COG0668	transmembrane transport
DJ533_05235	COG1702	phosphate starvation-inducible protein PhoH
DJ533_05240	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DJ533_05245	COG0741	lytic transglycosylase activity
DJ533_05245	COG1196	nuclear chromosome segregation
DJ533_05245	COG0739	heme binding
DJ533_05280	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DJ533_05285	COG1183	phosphatidylcholine synthase activity
DJ533_05325	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DJ533_05330	COG1960	acyl-CoA dehydrogenase activity
DJ533_05355	COG1309	transcriptional regulator
DJ533_05365	COG1028	Short-chain dehydrogenase reductase Sdr
DJ533_05370	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DJ533_05375	COG1960	acyl-CoA dehydrogenase activity
DJ533_05380	COG1024	Enoyl-CoA hydratase
DJ533_05410	COG2969	positive regulation of protein catabolic process
DJ533_05415	COG0625	glutathione transferase activity
DJ533_05420	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DJ533_05425	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DJ533_05430	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DJ533_05435	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DJ533_05440	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DJ533_05450	COG4676	Protein conserved in bacteria
DJ533_05460	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DJ533_05470	COG2096	Adenosyltransferase
DJ533_05475	COG4206	TonB-dependent receptor
DJ533_05490	COG0133	tryptophan synthase activity
DJ533_05505	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ533_05535	COG1862	Preprotein translocase
DJ533_05540	COG0343	queuine tRNA-ribosyltransferase activity
DJ533_05550	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DJ533_05560	COG0784	Response regulator, receiver
DJ533_05560	COG2205	protein histidine kinase activity
DJ533_05565	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
DJ533_05580	COG0726	polysaccharide deacetylase
DJ533_05615	COG1216	Glycosyl transferase, family 2
DJ533_05615	COG0463	Glycosyl transferase, family 2
DJ533_05625	COG3307	-O-antigen
DJ533_05635	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DJ533_05695	COG0420	3'-5' exonuclease activity
DJ533_05725	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DJ533_05735	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ533_05740	COG1408	metallophosphoesterase
DJ533_05745	COG0477	Major facilitator Superfamily
DJ533_05750	COG1272	protein, Hemolysin III
DJ533_05770	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ533_05770	COG1024	Enoyl-CoA hydratase
DJ533_05775	COG0183	Belongs to the thiolase family
DJ533_05785	COG2207	Transcriptional regulator
DJ533_05790	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DJ533_05840	COG0285	dihydrofolate synthase activity
DJ533_05860	COG0450	alkyl hydroperoxide reductase
DJ533_05875	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DJ533_05880	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
DJ533_05910	COG2199	diguanylate cyclase activity
DJ533_05945	COG1126	abc transporter atp-binding protein
DJ533_05950	COG0765	amino acid transport
DJ533_05955	COG0765	amino acid transport
DJ533_05960	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ533_05985	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DJ533_05995	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DJ533_06045	COG0494	nUDIX hydrolase
DJ533_06055	COG1214	PFAM Peptidase M22, glycoprotease
DJ533_06060	COG1968	undecaprenyl-diphosphatase activity
DJ533_06075	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
DJ533_06105	COG5002	protein histidine kinase activity
DJ533_06105	COG5001	Diguanylate cyclase
DJ533_06105	COG3447	MASE1 domain protein
DJ533_06115	COG0564	pseudouridine synthase activity
DJ533_06130	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ533_06145	COG1960	acyl-CoA dehydrogenase activity
DJ533_06150	COG1960	acyl-CoA dehydrogenase activity
DJ533_06165	COG2205	protein histidine kinase activity
DJ533_06170	COG0745	RESPONSE REGULATOR receiver
DJ533_06185	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
DJ533_06245	COG0556	nucleotide-excision repair
DJ533_06255	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DJ533_06270	COG0745	RESPONSE REGULATOR receiver
DJ533_06275	COG2205	protein histidine kinase activity
DJ533_06285	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ533_06305	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
DJ533_06315	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
DJ533_06320	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ533_06330	COG0713	ATP synthesis coupled electron transport
DJ533_06335	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DJ533_06340	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ533_06350	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DJ533_06365	COG0583	DNA-binding transcription factor activity
DJ533_06385	COG0668	transmembrane transport
DJ533_06390	COG2081	HI0933 family
DJ533_06425	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ533_06435	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DJ533_06435	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DJ533_06460	COG0489	protein tyrosine kinase activity
DJ533_06530	COG0582	viral genome integration into host DNA
DJ533_06540	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DJ533_06560	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DJ533_06590	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
DJ533_06610	COG0358	DNA primase activity
DJ533_06620	COG0564	pseudouridine synthase activity
DJ533_06655	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DJ533_06655	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ533_06670	COG0300	oxidoreductase activity
DJ533_06675	COG2072	flavoprotein involved in K transport
DJ533_06695	COG2009	succinate dehydrogenase
DJ533_06700	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DJ533_06705	COG1053	succinate dehydrogenase
DJ533_06710	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DJ533_06725	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ533_06735	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DJ533_06745	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
DJ533_06755	COG1289	transmembrane transporter activity
DJ533_06760	COG2814	Major facilitator Superfamily
DJ533_06775	COG0306	phosphate transporter
DJ533_06795	COG4771	TonB-dependent receptor
DJ533_06855	COG0175	sulfate reduction
DJ533_06895	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJ533_06915	COG0823	Involved in the tonB-independent uptake of proteins
DJ533_06920	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DJ533_06925	COG1686	Belongs to the peptidase S11 family
DJ533_06935	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DJ533_06950	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ533_06955	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DJ533_06960	COG0616	signal peptide processing
DJ533_06975	COG2915	High frequency lysogenization protein hflD homolog
DJ533_07015	COG0824	Thioesterase
DJ533_07055	COG0047	phosphoribosylformylglycinamidine synthase activity
DJ533_07055	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DJ533_07075	COG1301	dicarboxylic acid transport
DJ533_07135	COG0439	Biotin carboxylase
DJ533_07140	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DJ533_07170	COG1113	amino acid transport
DJ533_07175	COG2828	Protein conserved in bacteria
DJ533_07185	COG0584	glycerophosphoryl diester phosphodiesterase
DJ533_07195	COG2239	Acts as a magnesium transporter
DJ533_07205	COG0501	Belongs to the peptidase M48B family
DJ533_07210	COG1196	nuclear chromosome segregation
DJ533_07210	COG0741	lytic transglycosylase activity
DJ533_07210	COG0739	heme binding
DJ533_07220	COG0037	tRNA processing
DJ533_07230	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
DJ533_07235	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ533_07265	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ533_07265	COG1902	pentaerythritol trinitrate reductase activity
DJ533_07275	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DJ533_07280	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DJ533_07285	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ533_07295	COG0305	Participates in initiation and elongation during chromosome replication
DJ533_07305	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DJ533_07310	COG0360	Binds together with S18 to 16S ribosomal RNA
DJ533_07320	COG0151	Belongs to the GarS family
DJ533_07325	COG0138	bifunctional purine biosynthesis protein purh
DJ533_07330	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
DJ533_07420	COG3316	Transposase and inactivated derivatives
DJ533_07435	COG3316	Transposase and inactivated derivatives
DJ533_07445	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
DJ533_07465	COG2308	Evidence 4 Homologs of previously reported genes of
DJ533_07475	COG1305	Transglutaminase-like
DJ533_07490	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DJ533_07495	COG0833	amino acid
DJ533_07505	COG0833	amino acid
DJ533_07530	COG1136	(ABC) transporter
DJ533_07535	COG2333	competence protein COMEC
DJ533_07535	COG0658	competence protein
DJ533_07550	COG0596	Alpha beta hydrolase
DJ533_07560	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DJ533_07565	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
DJ533_07570	COG0628	permease
DJ533_07610	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DJ533_07615	COG1845	cytochrome c oxidase, subunit III
DJ533_07620	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DJ533_07625	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DJ533_07655	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DJ533_07665	COG1335	isochorismatase
DJ533_07670	COG1522	sequence-specific DNA binding
DJ533_07720	COG0778	Nitroreductase
DJ533_07725	COG1024	Enoyl-CoA hydratase
DJ533_07730	COG1051	belongs to the nudix hydrolase family
DJ533_07730	COG1056	cytidyltransferase-related domain
DJ533_07735	COG0583	DNA-binding transcription factor activity
DJ533_07765	COG0352	thiamine-phosphate diphosphorylase activity
DJ533_07810	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DJ533_07835	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJ533_07840	COG0418	dihydroorotase activity
DJ533_07855	COG3706	GGDEF domain
DJ533_07870	COG0556	nucleotide-excision repair
DJ533_07900	COG1733	regulation of RNA biosynthetic process
DJ533_07905	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
DJ533_07910	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DJ533_07940	COG2252	PERMEase
DJ533_07945	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DJ533_07955	COG3038	cytochrome b561
DJ533_07965	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DJ533_07975	COG0527	aspartate kinase activity
DJ533_07985	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DJ533_08000	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DJ533_08015	COG0477	Major facilitator Superfamily
DJ533_08020	COG0729	surface antigen
DJ533_08095	COG1067	ATP-dependent peptidase activity
DJ533_08135	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DJ533_08140	COG1966	Carbon starvation protein
DJ533_08145	COG2879	small protein
DJ533_08150	COG0625	glutathione transferase activity
DJ533_08165	COG2363	Small membrane protein
DJ533_08180	COG1278	Cold shock
DJ533_08185	COG0513	Belongs to the DEAD box helicase family
DJ533_08220	COG0512	Glutamine amidotransferase of anthranilate synthase
DJ533_08245	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DJ533_08275	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ533_08280	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DJ533_08295	COG0494	nUDIX hydrolase
DJ533_08310	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DJ533_08315	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DJ533_08320	COG3139	Protein of unknown function (DUF1315)
DJ533_08330	COG1301	dicarboxylic acid transport
DJ533_08350	COG0372	Belongs to the citrate synthase family
DJ533_08365	COG0583	DNA-binding transcription factor activity
DJ533_08370	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJ533_08380	COG0583	DNA-binding transcription factor activity
DJ533_08385	COG1960	acyl-CoA dehydrogenase activity
DJ533_08390	COG2814	Major facilitator Superfamily
DJ533_08410	COG1253	flavin adenine dinucleotide binding
DJ533_08430	COG1114	Component of the transport system for branched-chain amino acids
DJ533_08435	COG0024	Methionine aminopeptidase
DJ533_08440	COG3135	benzoate transporter
DJ533_08450	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DJ533_08480	COG3852	Histidine kinase
DJ533_08500	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DJ533_08505	COG0575	Belongs to the CDS family
DJ533_08540	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ533_08580	COG1610	YqeY-like protein
DJ533_08585	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DJ533_08605	COG2059	Chromate
DJ533_08645	COG3022	response to hydroperoxide
DJ533_08680	COG0540	Belongs to the ATCase OTCase family
DJ533_08690	COG1113	amino acid transport
DJ533_08695	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DJ533_08705	COG0786	glutamate:sodium symporter activity
DJ533_08710	COG2707	UPF0756 membrane protein
DJ533_08715	COG1187	pseudouridine synthase activity
DJ533_08735	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DJ533_08745	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ533_08770	COG2072	flavoprotein involved in K transport
DJ533_08790	COG1960	acyl-CoA dehydrogenase activity
DJ533_08795	COG0183	Belongs to the thiolase family
DJ533_08800	COG0427	acetyl-CoA hydrolase
DJ533_08825	COG0517	IMP dehydrogenase activity
DJ533_08825	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DJ533_08830	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DJ533_08840	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DJ533_08845	COG1137	ATPase activity
DJ533_08865	COG4122	O-methyltransferase activity
DJ533_08875	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DJ533_08880	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DJ533_08885	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DJ533_08895	COG3040	lipid binding
DJ533_08925	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DJ533_08945	COG1696	Membrane protein involved in D-alanine export
DJ533_08960	COG2031	fatty acid transporter
DJ533_08965	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DJ533_08985	COG1024	Enoyl-CoA hydratase
DJ533_08990	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DJ533_09000	COG1309	transcriptional regulator
DJ533_09005	COG0318	PFAM AMP-dependent synthetase and ligase
DJ533_09015	COG2937	Belongs to the GPAT DAPAT family
DJ533_09020	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DJ533_09035	COG0778	Nitroreductase
DJ533_09080	COG0642	Histidine kinase
DJ533_09085	COG0745	RESPONSE REGULATOR receiver
DJ533_09090	COG4232	protein-disulfide reductase activity
DJ533_09095	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJ533_09110	COG0596	Alpha beta hydrolase
DJ533_09115	COG5001	Diguanylate cyclase
DJ533_09115	COG3300	MHYT domain
DJ533_09120	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DJ533_09130	COG3122	Protein conserved in bacteria
DJ533_09135	COG3619	membrane
DJ533_09175	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DJ533_09195	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DJ533_09205	COG0133	tryptophan synthase activity
DJ533_09210	COG0517	IMP dehydrogenase activity
DJ533_09215	COG0668	transmembrane transport
DJ533_09230	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
DJ533_09245	COG1346	cytolysis
DJ533_09250	COG1380	Effector of murein hydrolase LrgA
DJ533_09255	COG0583	DNA-binding transcription factor activity
DJ533_09260	COG0583	DNA-binding transcription factor activity
DJ533_09275	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DJ533_09280	COG1960	acyl-CoA dehydrogenase activity
DJ533_09285	COG1024	Enoyl-CoA hydratase
DJ533_09305	COG0583	DNA-binding transcription factor activity
DJ533_09310	COG2207	Transcriptional regulator
DJ533_09320	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ533_09320	COG0543	2 iron, 2 sulfur cluster binding
DJ533_09325	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
DJ533_09330	COG4638	Rieske (2fe-2S)
DJ533_09335	COG1944	ATP diphosphatase activity
DJ533_09340	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DJ533_09380	COG0439	Biotin carboxylase
DJ533_09415	COG0537	adenosine 5'-monophosphoramidase activity
DJ533_09435	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DJ533_09485	COG0640	Transcriptional regulator
DJ533_09560	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
DJ533_09565	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DJ533_09570	COG3485	protocatechuate 3,4-dioxygenase
DJ533_09575	COG0069	glutamate synthase activity
DJ533_09585	COG2850	peptidyl-arginine hydroxylation
DJ533_09605	COG1840	ABC-type Fe3 transport system, periplasmic component
DJ533_09610	COG3842	ATPase activity
DJ533_09625	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DJ533_09630	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ533_09675	COG0316	Belongs to the HesB IscA family
DJ533_09680	COG0822	iron-sulfur transferase activity
DJ533_09705	COG0776	regulation of translation
DJ533_09710	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ533_09715	COG0012	GTP binding
DJ533_09735	COG0133	tryptophan synthase activity
DJ533_09745	COG0583	DNA-binding transcription factor activity
DJ533_09760	COG1902	pentaerythritol trinitrate reductase activity
DJ533_09760	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ533_09790	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ533_09795	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
DJ533_09805	COG0583	DNA-binding transcription factor activity
DJ533_09810	COG1960	acyl-CoA dehydrogenase activity
DJ533_09860	COG0583	DNA-binding transcription factor activity
DJ533_09875	COG0745	RESPONSE REGULATOR receiver
DJ533_09880	COG2205	protein histidine kinase activity
DJ533_09890	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
DJ533_09895	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
DJ533_09900	COG0308	aminopeptidase N
DJ533_09915	COG1690	Belongs to the RtcB family
DJ533_09935	COG0430	RNA-3'-phosphate cyclase activity
DJ533_09965	COG4245	von Willebrand factor, type A
DJ533_09985	COG0789	Transcriptional regulator
DJ533_09990	COG0431	NADPH-dependent FMN reductase
DJ533_09995	COG0798	PFAM Bile acid sodium symporter
DJ533_10005	COG0640	Transcriptional regulator
DJ533_10015	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ533_10020	COG1464	Belongs to the NlpA lipoprotein family
DJ533_10025	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DJ533_10030	COG2011	ABC-type metal ion transport system permease component
DJ533_10035	COG0789	Transcriptional regulator
DJ533_10055	COG1309	transcriptional regulator
DJ533_10060	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DJ533_10060	COG0519	Catalyzes the synthesis of GMP from XMP
DJ533_10070	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJ533_10080	COG1454	alcohol dehydrogenase
DJ533_10100	COG0318	PFAM AMP-dependent synthetase and ligase
DJ533_10105	COG0307	riboflavin synthase, alpha
DJ533_10115	COG0204	Acyl-transferase
DJ533_10125	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ533_10190	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DJ533_10195	COG1454	alcohol dehydrogenase
DJ533_10200	COG0824	Thioesterase
DJ533_10245	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ533_10250	COG2207	Transcriptional regulator
DJ533_10260	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DJ533_10280	COG0772	Belongs to the SEDS family
DJ533_10290	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
DJ533_10325	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
DJ533_10340	COG2920	part of a sulfur-relay system
DJ533_10360	COG1132	(ABC) transporter
DJ533_10375	COG0509	glycine decarboxylation via glycine cleavage system
DJ533_10380	COG2814	Major facilitator Superfamily
DJ533_10400	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DJ533_10410	COG0542	response to heat
DJ533_10415	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DJ533_10425	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DJ533_10430	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DJ533_10460	COG2323	membrane
DJ533_10570	COG4387	Mu-like prophage protein GP36
DJ533_10610	COG4383	Mu-like prophage protein gp29
DJ533_10680	COG1484	DNA-dependent DNA replication
DJ533_10725	COG2203	Gaf domain
DJ533_10725	COG2199	diguanylate cyclase activity
DJ533_10785	COG2814	Major facilitator Superfamily
DJ533_10795	COG2814	Major facilitator Superfamily
DJ533_10800	COG0583	DNA-binding transcription factor activity
DJ533_10805	COG4638	Rieske (2fe-2S)
DJ533_10810	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
DJ533_10815	COG0543	2 iron, 2 sulfur cluster binding
DJ533_10815	COG0633	Ferredoxin
DJ533_10820	COG1028	Short-chain dehydrogenase reductase Sdr
DJ533_10825	COG3135	benzoate transporter
DJ533_10840	COG2304	oxidoreductase activity
DJ533_10880	COG1358	cellular component organization or biogenesis
DJ533_10895	COG4589	Belongs to the CDS family
DJ533_10915	COG0552	protein localization to endoplasmic reticulum
DJ533_10920	COG0612	Peptidase, M16
DJ533_10960	COG1254	Belongs to the acylphosphatase family
DJ533_10965	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DJ533_10965	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DJ533_11015	COG2871	sodium ion transport
DJ533_11030	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DJ533_11050	COG0589	response to stress
DJ533_11055	COG0589	response to stress
DJ533_11065	COG1546	Belongs to the CinA family
DJ533_11065	COG1058	Belongs to the CinA family
DJ533_11105	COG1960	acyl-CoA dehydrogenase activity
DJ533_11110	COG1960	acyl-CoA dehydrogenase activity
DJ533_11120	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DJ533_11125	COG0477	Major facilitator Superfamily
DJ533_11145	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ533_11155	COG0730	response to heat
DJ533_11160	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DJ533_11190	COG1720	tRNA m6t6A37 methyltransferase activity
DJ533_11205	COG3706	GGDEF domain
DJ533_11240	COG0424	maF-like protein
DJ533_11245	COG0569	domain protein
DJ533_11250	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DJ533_11270	COG0494	nUDIX hydrolase
DJ533_11275	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ533_11285	COG1585	Membrane protein implicated in regulation of membrane protease activity
DJ533_11300	COG1294	oxidase, subunit
DJ533_11305	COG4890	Cyd operon protein YbgT
DJ533_11370	COG1643	Atp-dependent helicase
DJ533_11390	COG0450	alkyl hydroperoxide reductase
DJ533_11415	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DJ533_11420	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DJ533_11435	COG2431	L-lysine efflux transmembrane transporter activity
DJ533_11470	COG0590	tRNA wobble adenosine to inosine editing
DJ533_11480	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
DJ533_11515	COG0084	hydrolase, TatD family'
DJ533_11535	COG1663	tetraacyldisaccharide 4'-kinase activity
DJ533_11540	COG1132	(ABC) transporter
DJ533_11550	COG0811	peptide transport
DJ533_11555	COG1475	DNA binding
DJ533_11560	COG1192	Involved in chromosome partitioning
DJ533_11570	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DJ533_11575	COG3178	'Phosphotransferase
DJ533_11585	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ533_11590	COG1923	regulation of RNA biosynthetic process
DJ533_11600	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DJ533_11605	COG0802	atpase or kinase
DJ533_11610	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJ533_11620	COG1028	Short-chain dehydrogenase reductase Sdr
DJ533_11655	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ533_11670	COG2814	Major facilitator Superfamily
DJ533_11690	COG4650	regulator
DJ533_11695	COG1011	Hydrolase
DJ533_11700	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DJ533_11710	COG2137	regulation of response to DNA damage stimulus
DJ533_11735	COG4783	chaperone-mediated protein folding
DJ533_11760	COG1286	toxin biosynthetic process
DJ533_11765	COG0167	dihydroorotate dehydrogenase activity
DJ533_11785	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DJ533_11825	COG0583	DNA-binding transcription factor activity
DJ533_11830	COG4948	Mandelate Racemase Muconate Lactonizing
DJ533_11835	COG4829	muconolactone delta-isomerase
DJ533_11840	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DJ533_11845	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DJ533_11850	COG0183	Belongs to the thiolase family
DJ533_11855	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ533_11865	COG2963	transposase activity
DJ533_11875	COG4372	Transposase
DJ533_11890	COG3328	transposase activity
DJ533_11940	COG0582	viral genome integration into host DNA
DJ533_11945	COG3179	chitinase
DJ533_12120	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJ533_12155	COG0714	Associated with various cellular activities
DJ533_12180	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DJ533_12200	COG0076	glutamate decarboxylase activity
DJ533_12205	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DJ533_12215	COG0671	phosphoesterase, PA-phosphatase related
DJ533_12235	COG1132	(ABC) transporter
DJ533_12260	COG0386	Belongs to the glutathione peroxidase family
DJ533_12265	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ533_12270	COG0436	Aminotransferase
DJ533_12305	COG3739	integral membrane protein
DJ533_12320	COG1741	Belongs to the pirin family
DJ533_12325	COG0612	Peptidase, M16
DJ533_12335	COG2207	Transcriptional regulator
DJ533_12355	COG1187	pseudouridine synthase activity
DJ533_12360	COG1960	acyl-CoA dehydrogenase activity
DJ533_12380	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DJ533_12405	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DJ533_12410	COG0702	epimerase
DJ533_12435	COG3634	alkyl hydroperoxide reductase activity
DJ533_12455	COG0632	four-way junction helicase activity
DJ533_12460	COG2070	2-Nitropropane dioxygenase
DJ533_12465	COG2318	DinB family
DJ533_12485	COG3179	chitinase
DJ533_12740	COG5377	YqaJ viral recombinase family
DJ533_12750	COG0210	DNA helicase
DJ533_12770	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DJ533_12780	COG0573	inorganic phosphate transmembrane transporter activity
DJ533_12795	COG1045	serine acetyltransferase
DJ533_12810	COG1765	OsmC-like protein
DJ533_12820	COG0667	Aldo Keto reductase
DJ533_12825	COG1960	acyl-CoA dehydrogenase activity
DJ533_12845	COG2890	protein-(glutamine-N5) methyltransferase activity
DJ533_12865	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ533_12870	COG4682	membrane
DJ533_12880	COG1215	transferase activity, transferring glycosyl groups
DJ533_12885	COG1649	PFAM Uncharacterised BCR, COG1649
DJ533_12885	COG0726	polysaccharide deacetylase
DJ533_12910	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
DJ533_12915	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DJ533_12920	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DJ533_12930	COG0281	malic enzyme
DJ533_12930	COG0280	phosphate acetyltransferase
DJ533_12945	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
DJ533_12960	COG4172	Belongs to the ABC transporter superfamily
DJ533_12965	COG4239	(ABC) transporter, permease
DJ533_12970	COG4174	ABC transporter (Permease)
DJ533_12975	COG4166	transmembrane transport
DJ533_12980	COG1388	LysM domain
DJ533_12980	COG1388	LysM domain
DJ533_12980	COG0741	lytic transglycosylase activity
DJ533_12980	COG0741	lytic transglycosylase activity
DJ533_12985	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJ533_13055	COG2321	neutral zinc metallopeptidase
DJ533_13060	COG2354	Protein conserved in bacteria
DJ533_13075	COG1585	Membrane protein implicated in regulation of membrane protease activity
DJ533_13080	COG2268	Band 7 protein
DJ533_13105	COG1686	Belongs to the peptidase S11 family
DJ533_13110	COG1252	NADH dehydrogenase
DJ533_13120	COG0415	Belongs to the DNA photolyase family
DJ533_13140	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DJ533_13145	COG1381	Involved in DNA repair and RecF pathway recombination
DJ533_13155	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DJ533_13160	COG0571	ribonuclease III activity
DJ533_13170	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
DJ533_13175	COG4181	ATPase activity
DJ533_13190	COG0560	Phosphoserine phosphatase
DJ533_13200	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DJ533_13205	COG1530	ribonuclease E activity
DJ533_13210	COG0424	maF-like protein
DJ533_13215	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
DJ533_13220	COG1792	Involved in formation and maintenance of cell shape
DJ533_13225	COG1077	Cell shape determining protein MreB Mrl
DJ533_13230	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DJ533_13240	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DJ533_13305	COG0204	Acyl-transferase
DJ533_13310	COG3015	lipoprotein NlpE involved in copper resistance
DJ533_13325	COG1253	flavin adenine dinucleotide binding
DJ533_13345	COG3118	belongs to the thioredoxin family
DJ533_13350	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ533_13365	COG0277	FAD linked oxidase domain protein
DJ533_13375	COG2186	Transcriptional regulator
DJ533_13405	COG1131	(ABC) transporter
DJ533_13410	COG0842	Transport permease protein
DJ533_13430	COG2951	lytic endotransglycosylase activity
DJ533_13470	COG0052	Belongs to the universal ribosomal protein uS2 family
DJ533_13475	COG0024	Methionine aminopeptidase
DJ533_13500	COG1116	anion transmembrane transporter activity
DJ533_13510	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
DJ533_13530	COG1028	Short-chain dehydrogenase reductase Sdr
DJ533_13540	COG0525	valine-tRNA ligase activity
DJ533_13565	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DJ533_13570	COG3161	chorismate lyase activity
DJ533_13575	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DJ533_13580	COG0019	diaminopimelate decarboxylase activity
DJ533_13590	COG1113	amino acid transport
DJ533_13625	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DJ533_13630	COG1773	rubredoxin
DJ533_13635	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ533_13645	COG0583	DNA-binding transcription factor activity
DJ533_13670	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ533_13685	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DJ533_13690	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DJ533_13695	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DJ533_13705	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DJ533_13710	COG4208	sulfate ABC transporter
DJ533_13715	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DJ533_13720	COG0583	DNA-binding transcription factor activity
DJ533_13725	COG4625	pathogenesis
DJ533_13735	COG0602	queuosine metabolic process
DJ533_13745	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DJ533_13755	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DJ533_13760	COG3338	carbonate dehydratase activity
DJ533_13765	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DJ533_13790	COG0586	Pfam SNARE associated Golgi protein
DJ533_13845	COG0321	lipoyl(octanoyl) transferase activity
DJ533_13860	COG0531	amino acid
DJ533_13875	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DJ533_13880	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DJ533_13880	COG1648	precorrin-2 dehydrogenase activity
DJ533_13890	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DJ533_13920	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DJ533_13935	COG0671	phosphoesterase, PA-phosphatase related
DJ533_13940	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ533_13950	COG1538	Outer membrane efflux protein
DJ533_13980	COG0004	ammonium transporteR
DJ533_13995	COG0642	Histidine kinase
DJ533_14000	COG0745	RESPONSE REGULATOR receiver
DJ533_14005	COG2194	sulfuric ester hydrolase activity
DJ533_14020	COG1752	Esterase of the alpha-beta hydrolase superfamily
DJ533_14050	COG0142	geranyltranstransferase activity
DJ533_14110	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
DJ533_14135	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DJ533_14155	COG3540	Alkaline phosphatase
DJ533_14170	COG2304	oxidoreductase activity
DJ533_14175	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DJ533_14180	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DJ533_14185	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
DJ533_14200	COG0505	Belongs to the CarA family
DJ533_14205	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DJ533_14220	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
DJ533_14240	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ533_14245	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ533_14255	COG1794	racemase activity, acting on amino acids and derivatives
DJ533_14260	COG0006	proline dipeptidase activity
DJ533_14290	COG1271	oxidase subunit
DJ533_14295	COG1294	oxidase, subunit
DJ533_14305	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ533_14310	COG4607	ABC-type enterochelin transport system periplasmic component
DJ533_14315	COG4604	ABC transporter, ATP-binding protein
DJ533_14320	COG4605	iron ion homeostasis
DJ533_14325	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ533_14335	COG2814	Major facilitator Superfamily
DJ533_14340	COG1607	acyl-coa hydrolase
DJ533_14350	COG1752	Esterase of the alpha-beta hydrolase superfamily
DJ533_14355	COG0786	glutamate:sodium symporter activity
DJ533_14370	COG0242	peptide deformylase activity
DJ533_14380	COG3706	GGDEF domain
DJ533_14395	COG1024	Enoyl-CoA hydratase
DJ533_14425	COG1215	transferase activity, transferring glycosyl groups
DJ533_14430	COG1649	PFAM Uncharacterised BCR, COG1649
DJ533_14430	COG0726	polysaccharide deacetylase
DJ533_14440	COG4681	YaeQ
DJ533_14445	COG0523	cobalamin synthesis protein
DJ533_14460	COG1741	Belongs to the pirin family
DJ533_14485	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DJ533_14495	COG2826	transposase and inactivated derivatives, IS30 family
DJ533_14525	COG1324	tolerance protein
DJ533_14530	COG0673	inositol 2-dehydrogenase activity
DJ533_14550	COG2826	transposase and inactivated derivatives, IS30 family
DJ533_14555	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
DJ533_14560	COG3384	dioxygenase
DJ533_14580	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DJ533_14585	COG2878	Part of a membrane complex involved in electron transport
DJ533_14590	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DJ533_14630	COG0768	penicillin binding
DJ533_14635	COG0742	ribosomal rna small subunit methyltransferase
DJ533_14720	COG0643	Histidine kinase
DJ533_14720	COG2198	Histidine kinase
DJ533_14720	COG2198	Histidine kinase
DJ533_14720	COG0643	Histidine kinase
DJ533_14725	COG0840	transmembrane signaling receptor activity
DJ533_14750	COG0442	prolyl-tRNA aminoacylation
DJ533_14765	COG0009	L-threonylcarbamoyladenylate synthase
DJ533_14770	COG3101	peptidyl-lysine hydroxylation
DJ533_14790	COG1028	Short-chain dehydrogenase reductase Sdr
DJ533_14800	COG1652	LysM domain
DJ533_14815	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJ533_14835	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DJ533_14840	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DJ533_14855	COG4106	trans-aconitate 2-methyltransferase activity
DJ533_14870	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ533_14870	COG2226	methyltransferase
DJ533_14870	COG0596	Alpha beta hydrolase
DJ533_14880	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DJ533_14890	COG2193	ferroxidase activity
DJ533_14900	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DJ533_14910	COG1196	nuclear chromosome segregation
DJ533_14920	COG0730	response to heat
DJ533_14940	COG3545	Serine hydrolase
DJ533_14945	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DJ533_14965	COG5342	invasion associated locus B
DJ533_14970	COG0494	nUDIX hydrolase
DJ533_14980	COG0628	permease
DJ533_14990	COG2824	Alkylphosphonate utilization operon protein PhnA
DJ533_14995	COG3189	MarR family transcriptional regulator
DJ533_15010	COG2814	Major facilitator Superfamily
DJ533_15020	COG2050	protein possibly involved in aromatic compounds catabolism
DJ533_15030	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ533_15035	COG1090	epimerase
DJ533_15060	COG0352	thiamine-phosphate diphosphorylase activity
DJ533_15060	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DJ533_15060	COG0351	phosphomethylpyrimidine kinase
DJ533_15080	COG2076	Multidrug Resistance protein
DJ533_15085	COG2076	Multidrug Resistance protein
DJ533_15095	COG2132	Multicopper oxidase
DJ533_15105	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DJ533_15120	COG4269	membrane
DJ533_15155	COG0354	folic acid binding
DJ533_15185	COG0735	belongs to the Fur family
DJ533_15190	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJ533_15195	COG2914	Belongs to the UPF0125 (RnfH) family
DJ533_15210	COG0121	glutamine amidotransferase
DJ533_15225	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DJ533_15235	COG0210	DNA helicase
DJ533_15240	COG2885	chlorophyll binding
DJ533_15245	COG0204	Acyl-transferase
DJ533_15255	COG0850	regulation of cytokinetic process
DJ533_15260	COG2894	cell division
DJ533_15265	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
DJ533_15285	COG1674	ftsk spoiiie
DJ533_15285	COG0531	amino acid
DJ533_15290	COG0492	ferredoxin-NADP+ reductase activity
DJ533_15295	COG0500	methyltransferase
DJ533_15300	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DJ533_15310	COG0456	acetyltransferase
DJ533_15345	COG0714	Associated with various cellular activities
DJ533_15355	COG3552	Protein containing von Willebrand factor type A (VWA) domain
DJ533_15365	COG3831	ATPase activity
DJ533_15380	COG1902	pentaerythritol trinitrate reductase activity
DJ533_15390	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ533_15410	COG2233	PERMEase
DJ533_15420	COG0833	amino acid
DJ533_15425	COG1690	Belongs to the RtcB family
DJ533_15435	COG2885	chlorophyll binding
DJ533_15435	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJ533_15445	COG0183	Belongs to the thiolase family
DJ533_15460	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ533_15465	COG1028	Short-chain dehydrogenase reductase Sdr
DJ533_15505	COG2986	histidine ammonia-lyase
DJ533_15520	COG0318	PFAM AMP-dependent synthetase and ligase
DJ533_15530	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ533_15535	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ533_15555	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJ533_15575	COG1426	Protein conserved in bacteria
DJ533_15580	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
DJ533_15615	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DJ533_15620	COG0440	acetolactate synthase activity
DJ533_15625	COG0028	Belongs to the TPP enzyme family
DJ533_15665	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ533_15670	COG0577	efflux transmembrane transporter activity
DJ533_15670	COG1136	(ABC) transporter
DJ533_15675	COG1538	Outer membrane efflux protein
DJ533_15690	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DJ533_15700	COG1238	metal cluster binding
DJ533_15715	COG0625	glutathione transferase activity
DJ533_15735	COG0318	PFAM AMP-dependent synthetase and ligase
DJ533_15740	COG3028	Belongs to the UPF0307 family
DJ533_15750	COG1660	Displays ATPase and GTPase activities
DJ533_15755	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
DJ533_15760	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
DJ533_15765	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DJ533_15770	COG0617	tRNA 3'-terminal CCA addition
DJ533_15775	COG1596	polysaccharide export
DJ533_15775	COG1555	photosystem II stabilization
DJ533_15780	COG3956	TIGRFAM MazG family protein
DJ533_15790	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJ533_15810	COG0784	Response regulator, receiver
DJ533_15810	COG2205	protein histidine kinase activity
DJ533_15810	COG5002	protein histidine kinase activity
DJ533_15815	COG1024	Enoyl-CoA hydratase
DJ533_15820	COG2084	Dehydrogenase
DJ533_15825	COG3622	Belongs to the hyi family
DJ533_15845	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
DJ533_15850	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DJ533_15855	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DJ533_15860	COG0697	spore germination
DJ533_15870	COG0789	Transcriptional regulator
DJ533_15880	COG2814	Major facilitator Superfamily
DJ533_15900	COG1607	acyl-coa hydrolase
DJ533_15915	COG3453	Protein conserved in bacteria
DJ533_15915	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ533_15970	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ533_15975	COG1940	carbohydrate kinase activity
DJ533_16020	COG0037	tRNA processing
DJ533_16030	COG0248	Ppx GppA phosphatase
DJ533_16050	COG0776	regulation of translation
DJ533_16055	COG0072	phenylalanine-tRNA ligase activity
DJ533_16060	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DJ533_16080	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
DJ533_16100	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
DJ533_16105	COG1162	GTPase activity
DJ533_16145	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DJ533_16150	COG2003	Belongs to the UPF0758 family
DJ533_16155	COG3781	membrane
DJ533_16160	COG0613	PHP domain protein
DJ533_16170	COG2350	Protein conserved in bacteria
DJ533_16185	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DJ533_16205	COG0583	DNA-binding transcription factor activity
DJ533_16220	COG0251	oxidation-reduction process
DJ533_16225	COG1012	belongs to the aldehyde dehydrogenase family
DJ533_16235	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DJ533_16245	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJ533_16265	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJ533_16285	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DJ533_16300	COG0084	hydrolase, TatD family'
DJ533_16315	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DJ533_16325	COG0793	Belongs to the peptidase S41A family
DJ533_16355	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DJ533_16360	COG0857	belongs to the CobB CobQ family
DJ533_16360	COG0280	phosphate acetyltransferase
DJ533_16405	COG0740	serine-type endopeptidase activity
DJ533_16415	COG4771	TonB-dependent receptor
DJ533_16420	COG4774	siderophore transport
DJ533_16430	COG3128	pkhd-type hydroxylase
DJ533_16440	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ533_16445	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ533_16450	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ533_16450	COG2813	Specifically methylates the guanine in position
DJ533_16480	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DJ533_16520	COG3878	Protein conserved in bacteria
DJ533_16530	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DJ533_16565	COG0788	formyltetrahydrofolate deformylase activity
DJ533_16580	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DJ533_16585	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DJ533_16590	COG4651	solute:proton antiporter activity
DJ533_16590	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DJ533_16620	COG0210	DNA helicase
DJ533_16635	COG1929	Belongs to the glycerate kinase type-1 family
DJ533_16685	COG2900	Belongs to the SlyX family
DJ533_16705	COG1560	Kdo2-lipid A biosynthetic process
DJ533_16745	COG0252	asparaginase activity
DJ533_16780	COG0473	3-isopropylmalate dehydrogenase activity
DJ533_16795	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DJ533_16815	COG0583	DNA-binding transcription factor activity
DJ533_16830	COG0494	nUDIX hydrolase
DJ533_16845	COG1335	isochorismatase
DJ533_16850	COG0583	DNA-binding transcription factor activity
DJ533_16865	COG1960	acyl-CoA dehydrogenase activity
DJ533_16875	COG0753	catalase activity
DJ533_16905	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ533_16910	COG3384	dioxygenase
DJ533_16930	COG4638	Rieske (2fe-2S)
DJ533_16940	COG0583	DNA-binding transcription factor activity
DJ533_16965	COG4569	acetaldehyde dehydrogenase (acetylating) activity
DJ533_16970	COG3971	2-oxopent-4-enoate hydratase activity
DJ533_16975	COG0546	phosphoglycolate phosphatase activity
DJ533_16980	COG0564	pseudouridine synthase activity
DJ533_16990	COG1530	ribonuclease E activity
DJ533_17025	COG1983	PspC domain protein
DJ533_17030	COG0517	IMP dehydrogenase activity
DJ533_17060	COG0751	glycine-tRNA ligase activity
DJ533_17090	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ533_17140	COG1192	Involved in chromosome partitioning
DJ533_17145	COG0628	permease
DJ533_17150	COG2032	superoxide dismutase activity
DJ533_17155	COG2814	Major facilitator Superfamily
DJ533_17190	COG0277	FAD linked oxidase domain protein
DJ533_17195	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJ533_17200	COG5006	permease, DMT superfamily
DJ533_17230	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DJ533_17235	COG5380	lipid catabolic process
DJ533_17240	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
DJ533_17245	COG0335	large ribosomal subunit rRNA binding
DJ533_17255	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DJ533_17260	COG0228	four-way junction DNA binding
DJ533_17305	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DJ533_17310	COG0194	GDP metabolic process
DJ533_17315	COG1758	RNA polymerase activity
DJ533_17320	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJ533_17340	COG3307	-O-antigen
DJ533_17365	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
DJ533_17370	COG1704	LemA family
DJ533_17375	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DJ533_17380	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DJ533_17385	COG0195	Participates in both transcription termination and antitermination
DJ533_17390	COG0779	Required for maturation of 30S ribosomal subunits
DJ533_17440	COG0237	dephospho-CoA kinase activity
DJ533_17450	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJ533_17455	COG3123	guanosine phosphorylase activity
DJ533_17460	COG0497	DNA recombination
DJ533_17490	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DJ533_17495	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DJ533_17510	COG0318	PFAM AMP-dependent synthetase and ligase
DJ533_17520	COG0477	Major facilitator Superfamily
DJ533_17525	COG2860	membrane
DJ533_17540	COG2226	methyltransferase
DJ533_17545	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DJ533_17550	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DJ533_17555	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DJ533_17575	COG0456	acetyltransferase
DJ533_17585	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DJ533_17625	COG0488	(ABC) transporter
DJ533_17635	COG4221	oxidoreductase activity
DJ533_17650	COG0745	RESPONSE REGULATOR receiver
DJ533_17655	COG2205	protein histidine kinase activity
DJ533_17660	COG0427	acetyl-CoA hydrolase
DJ533_17695	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DJ533_17725	COG2329	Antibiotic biosynthesis monooxygenase
DJ533_17740	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DJ533_17755	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DJ533_17795	COG2733	membrane
DJ533_17815	COG2918	glutathione biosynthetic process
DJ533_17830	COG3150	esterase
DJ533_17850	COG3047	cAMP biosynthetic process
DJ533_17880	COG1309	transcriptional regulator
DJ533_17905	COG1652	LysM domain
DJ533_17910	COG0758	DNA mediated transformation
DJ533_17925	COG0697	spore germination
DJ533_17940	COG0436	Aminotransferase
DJ533_17945	COG0534	Mate efflux family protein
DJ533_18010	COG0560	Phosphoserine phosphatase
DJ533_18010	COG3830	Belongs to the UPF0237 family
DJ533_18025	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DJ533_18040	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DJ533_18050	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DJ533_18055	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DJ533_18060	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DJ533_18075	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DJ533_18080	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DJ533_18100	COG2244	polysaccharide biosynthetic process
DJ533_18105	COG2089	acid synthase
DJ533_18110	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJ533_18130	COG1083	cytidylyl-transferase
DJ533_18135	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DJ533_18140	COG1086	Polysaccharide biosynthesis protein
DJ533_18145	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DJ533_18150	COG1596	polysaccharide export
DJ533_18185	COG3023	N-Acetylmuramoyl-L-alanine amidase
DJ533_18205	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
DJ533_18235	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DJ533_18240	COG0546	phosphoglycolate phosphatase activity
DJ533_18245	COG1028	Short-chain dehydrogenase reductase Sdr
DJ533_18260	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
DJ533_18260	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DJ533_18265	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DJ533_18270	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DJ533_18275	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ533_18280	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJ533_18285	COG1116	anion transmembrane transporter activity
DJ533_18290	COG1309	transcriptional regulator
DJ533_18295	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DJ533_18325	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
DJ533_18340	COG2233	PERMEase
DJ533_18355	COG0196	riboflavin kinase activity
DJ533_18360	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DJ533_18365	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DJ533_18370	COG1047	Peptidyl-prolyl cis-trans
DJ533_18385	COG2814	Major facilitator Superfamily
DJ533_18415	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DJ533_18465	COG2951	lytic endotransglycosylase activity
DJ533_18470	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DJ533_18490	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DJ533_18510	COG2388	GCN5-related N-acetyl-transferase
DJ533_18515	COG2388	GCN5-related N-acetyl-transferase
DJ533_18520	COG2814	Major facilitator Superfamily
DJ533_18525	COG0861	Integral membrane protein TerC family
DJ533_18535	COG0402	S-adenosylhomocysteine deaminase activity
DJ533_18545	COG2261	transglycosylase associated protein
DJ533_18550	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DJ533_18585	COG0706	membrane insertase activity
DJ533_18590	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DJ533_18595	COG0594	ribonuclease P activity
DJ533_18600	COG0230	Belongs to the bacterial ribosomal protein bL34 family