locus-tag	class	description
AhaeAN54_000060	COG3550	peptidyl-serine autophosphorylation
AhaeAN54_000065	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AhaeAN54_000185	COG0735	belongs to the Fur family
AhaeAN54_000245	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AhaeAN54_000255	COG4115	mRNA cleavage
AhaeAN54_000275	COG0477	Major facilitator Superfamily
AhaeAN54_000280	COG1024	Enoyl-CoA hydratase
AhaeAN54_000285	COG1024	Enoyl-CoA hydratase
AhaeAN54_000290	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_000295	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AhaeAN54_000315	COG1113	amino acid transport
AhaeAN54_000320	COG0251	oxidation-reduction process
AhaeAN54_000335	COG1522	sequence-specific DNA binding
AhaeAN54_000350	COG0456	acetyltransferase
AhaeAN54_000360	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AhaeAN54_000390	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AhaeAN54_000410	COG1802	Transcriptional regulator
AhaeAN54_000415	COG1448	Aminotransferase
AhaeAN54_000420	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AhaeAN54_000425	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AhaeAN54_000440	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AhaeAN54_000450	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AhaeAN54_000460	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AhaeAN54_000485	COG1216	Glycosyl transferase, family 2
AhaeAN54_000490	COG5039	Polysaccharide pyruvyl transferase
AhaeAN54_000500	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
AhaeAN54_000535	COG3023	N-Acetylmuramoyl-L-alanine amidase
AhaeAN54_000585	COG0546	phosphoglycolate phosphatase activity
AhaeAN54_000590	COG1028	Short-chain dehydrogenase reductase Sdr
AhaeAN54_000600	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AhaeAN54_000600	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AhaeAN54_000605	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_000610	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_000615	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AhaeAN54_000620	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AhaeAN54_000625	COG1116	anion transmembrane transporter activity
AhaeAN54_000630	COG1309	transcriptional regulator
AhaeAN54_000640	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AhaeAN54_000650	COG0196	riboflavin kinase activity
AhaeAN54_000655	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AhaeAN54_000665	COG1047	Peptidyl-prolyl cis-trans
AhaeAN54_000705	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AhaeAN54_000730	COG0583	DNA-binding transcription factor activity
AhaeAN54_000740	COG0443	Heat shock 70 kDa protein
AhaeAN54_000745	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
AhaeAN54_000770	COG2951	lytic endotransglycosylase activity
AhaeAN54_000775	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AhaeAN54_000795	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AhaeAN54_000815	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_000825	COG0861	Integral membrane protein TerC family
AhaeAN54_000850	COG0402	S-adenosylhomocysteine deaminase activity
AhaeAN54_000865	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AhaeAN54_000875	COG0706	membrane insertase activity
AhaeAN54_000890	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AhaeAN54_000900	COG0592	DNA-directed DNA polymerase activity
AhaeAN54_000910	COG0187	DNA topoisomerase II activity
AhaeAN54_000915	COG0586	Pfam SNARE associated Golgi protein
AhaeAN54_000920	COG0488	(ABC) transporter
AhaeAN54_000945	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AhaeAN54_000950	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AhaeAN54_000990	COG3273	potassium ion transport
AhaeAN54_000990	COG0471	metal ion transport
AhaeAN54_001000	COG1012	belongs to the aldehyde dehydrogenase family
AhaeAN54_001020	COG4372	Transposase
AhaeAN54_001035	COG0733	neurotransmitter:sodium symporter activity
AhaeAN54_001075	COG2233	PERMEase
AhaeAN54_001090	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_001105	COG0484	heat shock protein binding
AhaeAN54_001120	COG2814	Major facilitator Superfamily
AhaeAN54_001125	COG0656	L-ascorbic acid biosynthetic process
AhaeAN54_001130	COG0583	DNA-binding transcription factor activity
AhaeAN54_001140	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AhaeAN54_001145	COG1064	alcohol dehydrogenase
AhaeAN54_001150	COG2818	Glycosylase
AhaeAN54_001165	COG1194	a g-specific adenine glycosylase
AhaeAN54_001175	COG5487	UPF0391 membrane protein
AhaeAN54_001180	COG2983	Belongs to the UPF0260 family
AhaeAN54_001185	COG2133	pyrroloquinoline quinone binding
AhaeAN54_001195	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AhaeAN54_001205	COG1228	amidohydrolase
AhaeAN54_001210	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AhaeAN54_001220	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AhaeAN54_001225	COG1335	isochorismatase
AhaeAN54_001230	COG1522	sequence-specific DNA binding
AhaeAN54_001355	COG0633	Ferredoxin
AhaeAN54_001405	COG2814	Major facilitator Superfamily
AhaeAN54_001460	COG0789	Transcriptional regulator
AhaeAN54_001465	COG2217	Heavy metal translocating P-type atpase
AhaeAN54_001470	COG0640	Transcriptional regulator
AhaeAN54_001480	COG1230	cation diffusion facilitator family transporter
AhaeAN54_001485	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_001495	COG1538	Outer membrane efflux protein
AhaeAN54_001605	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AhaeAN54_001615	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AhaeAN54_001620	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AhaeAN54_001625	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AhaeAN54_001645	COG0560	Phosphoserine phosphatase
AhaeAN54_001645	COG3830	Belongs to the UPF0237 family
AhaeAN54_001720	COG0534	Mate efflux family protein
AhaeAN54_001725	COG0436	Aminotransferase
AhaeAN54_001735	COG2733	membrane
AhaeAN54_001750	COG2918	glutathione biosynthetic process
AhaeAN54_001765	COG3150	esterase
AhaeAN54_001785	COG0559	Belongs to the binding-protein-dependent transport system permease family
AhaeAN54_001800	COG0410	ABC transporter
AhaeAN54_001810	COG1247	-acetyltransferase
AhaeAN54_001845	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_001885	COG1132	(ABC) transporter
AhaeAN54_001905	COG1393	Belongs to the ArsC family
AhaeAN54_001910	COG0708	Exodeoxyribonuclease III
AhaeAN54_001930	COG0300	oxidoreductase activity
AhaeAN54_001945	COG2801	Transposase and inactivated derivatives
AhaeAN54_001960	COG0386	Belongs to the glutathione peroxidase family
AhaeAN54_001965	COG0189	ligase activity
AhaeAN54_001985	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AhaeAN54_002035	COG2119	membrane
AhaeAN54_002040	COG4774	siderophore transport
AhaeAN54_002045	COG0426	domain, Protein
AhaeAN54_002045	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AhaeAN54_002070	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AhaeAN54_002090	COG1902	pentaerythritol trinitrate reductase activity
AhaeAN54_002100	COG1519	Transferase
AhaeAN54_002110	COG0668	transmembrane transport
AhaeAN54_002115	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AhaeAN54_002145	COG3706	GGDEF domain
AhaeAN54_002170	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AhaeAN54_002170	COG0352	thiamine-phosphate diphosphorylase activity
AhaeAN54_002170	COG0351	phosphomethylpyrimidine kinase
AhaeAN54_002180	COG2814	Major facilitator Superfamily
AhaeAN54_002205	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AhaeAN54_002210	COG1012	belongs to the aldehyde dehydrogenase family
AhaeAN54_002220	COG1335	isochorismatase
AhaeAN54_002230	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
AhaeAN54_002290	COG0582	viral genome integration into host DNA
AhaeAN54_002310	COG0629	single-stranded DNA binding
AhaeAN54_002375	COG2801	Transposase and inactivated derivatives
AhaeAN54_002420	COG0582	viral genome integration into host DNA
AhaeAN54_002430	COG3158	transport of potassium into the cell
AhaeAN54_002445	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AhaeAN54_002465	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AhaeAN54_002485	COG0659	secondary active sulfate transmembrane transporter activity
AhaeAN54_002500	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_002505	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AhaeAN54_002535	COG0427	acetyl-CoA hydrolase
AhaeAN54_002540	COG2205	protein histidine kinase activity
AhaeAN54_002545	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_002570	COG1028	Short-chain dehydrogenase reductase Sdr
AhaeAN54_002575	COG0583	DNA-binding transcription factor activity
AhaeAN54_002585	COG0789	Transcriptional regulator
AhaeAN54_002590	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AhaeAN54_002590	COG3320	Male sterility
AhaeAN54_002595	COG4221	oxidoreductase activity
AhaeAN54_002605	COG0488	(ABC) transporter
AhaeAN54_002740	COG0833	amino acid
AhaeAN54_002765	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AhaeAN54_002785	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AhaeAN54_002790	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AhaeAN54_002795	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AhaeAN54_002800	COG2226	methyltransferase
AhaeAN54_002850	COG0069	glutamate synthase activity
AhaeAN54_002850	COG0070	glutamate synthase
AhaeAN54_002850	COG0067	glutamate synthase
AhaeAN54_002855	COG0493	'glutamate synthase
AhaeAN54_002865	COG1704	LemA family
AhaeAN54_002870	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AhaeAN54_002915	COG3307	-O-antigen
AhaeAN54_002925	COG2906	2 iron, 2 sulfur cluster binding
AhaeAN54_002935	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AhaeAN54_002945	COG0194	GDP metabolic process
AhaeAN54_002950	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AhaeAN54_002955	COG4969	Belongs to the N-Me-Phe pilin family
AhaeAN54_003020	COG0228	four-way junction DNA binding
AhaeAN54_003025	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AhaeAN54_003035	COG0335	large ribosomal subunit rRNA binding
AhaeAN54_003045	COG5380	lipid catabolic process
AhaeAN54_003050	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AhaeAN54_003075	COG0739	heme binding
AhaeAN54_003075	COG1196	nuclear chromosome segregation
AhaeAN54_003075	COG0741	lytic transglycosylase activity
AhaeAN54_003080	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AhaeAN54_003085	COG0277	FAD linked oxidase domain protein
AhaeAN54_003100	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AhaeAN54_003105	COG2249	NAD(P)H dehydrogenase (quinone) activity
AhaeAN54_003120	COG1289	transmembrane transporter activity
AhaeAN54_003125	COG0628	permease
AhaeAN54_003130	COG1192	Involved in chromosome partitioning
AhaeAN54_003140	COG2226	methyltransferase
AhaeAN54_003175	COG1404	Belongs to the peptidase S8 family
AhaeAN54_003185	COG2072	flavoprotein involved in K transport
AhaeAN54_003245	COG0471	metal ion transport
AhaeAN54_003255	COG1983	PspC domain protein
AhaeAN54_003265	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_003325	COG1127	ABC transporter
AhaeAN54_003330	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AhaeAN54_003335	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AhaeAN54_003340	COG2854	intermembrane phospholipid transfer
AhaeAN54_003355	COG0598	Magnesium transport protein CorA
AhaeAN54_003370	COG1040	competence protein
AhaeAN54_003375	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AhaeAN54_003390	COG2937	Belongs to the GPAT DAPAT family
AhaeAN54_003395	COG1946	Acyl-CoA thioesterase
AhaeAN54_003400	COG1301	dicarboxylic acid transport
AhaeAN54_003430	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AhaeAN54_003430	COG1017	nitric oxide dioxygenase activity
AhaeAN54_003435	COG0433	COG0433 Predicted ATPase
AhaeAN54_003455	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AhaeAN54_003475	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AhaeAN54_003525	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AhaeAN54_003560	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AhaeAN54_003570	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AhaeAN54_003585	COG0203	ribosomal protein L17
AhaeAN54_003605	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_003610	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AhaeAN54_003640	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AhaeAN54_003665	COG0339	signal peptide processing
AhaeAN54_003670	COG0557	exoribonuclease II activity
AhaeAN54_003750	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_003770	COG0179	Fumarylacetoacetate (FAA) hydrolase
AhaeAN54_003780	COG2207	Transcriptional regulator
AhaeAN54_003790	COG1295	ribonuclease BN
AhaeAN54_003820	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AhaeAN54_003845	COG2813	Specifically methylates the guanine in position
AhaeAN54_003845	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AhaeAN54_003855	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AhaeAN54_003865	COG4771	TonB-dependent receptor
AhaeAN54_003875	COG0740	serine-type endopeptidase activity
AhaeAN54_003895	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AhaeAN54_003895	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AhaeAN54_003900	COG2207	Transcriptional regulator
AhaeAN54_003900	COG1917	Cupin 2, conserved barrel domain protein
AhaeAN54_003925	COG0280	phosphate acetyltransferase
AhaeAN54_003925	COG0857	belongs to the CobB CobQ family
AhaeAN54_003930	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AhaeAN54_003960	COG0793	Belongs to the peptidase S41A family
AhaeAN54_003980	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AhaeAN54_003990	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AhaeAN54_003995	COG1408	metallophosphoesterase
AhaeAN54_004010	COG2199	diguanylate cyclase activity
AhaeAN54_004050	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_004065	COG1309	transcriptional regulator
AhaeAN54_004080	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AhaeAN54_004085	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_004140	COG2969	positive regulation of protein catabolic process
AhaeAN54_004145	COG0625	glutathione transferase activity
AhaeAN54_004150	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AhaeAN54_004155	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AhaeAN54_004165	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AhaeAN54_004170	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AhaeAN54_004175	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AhaeAN54_004190	COG2975	iron-sulfur cluster assembly
AhaeAN54_004210	COG1426	Protein conserved in bacteria
AhaeAN54_004245	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AhaeAN54_004255	COG1862	Preprotein translocase
AhaeAN54_004285	COG5002	protein histidine kinase activity
AhaeAN54_004285	COG0784	Response regulator, receiver
AhaeAN54_004285	COG2205	protein histidine kinase activity
AhaeAN54_004290	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AhaeAN54_004300	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AhaeAN54_004325	COG2755	lipolytic protein G-D-S-L family
AhaeAN54_004325	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AhaeAN54_004360	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AhaeAN54_004400	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_004405	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_004415	COG2205	protein histidine kinase activity
AhaeAN54_004420	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_004435	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AhaeAN54_004455	COG2096	Adenosyltransferase
AhaeAN54_004460	COG4206	TonB-dependent receptor
AhaeAN54_004470	COG0133	tryptophan synthase activity
AhaeAN54_004510	COG0285	dihydrofolate synthase activity
AhaeAN54_004525	COG0450	alkyl hydroperoxide reductase
AhaeAN54_004545	COG0477	Major facilitator Superfamily
AhaeAN54_004550	COG1272	protein, Hemolysin III
AhaeAN54_004580	COG1250	3-hydroxyacyl-CoA dehydrogenase
AhaeAN54_004580	COG1024	Enoyl-CoA hydratase
AhaeAN54_004585	COG0183	Belongs to the thiolase family
AhaeAN54_004595	COG2207	Transcriptional regulator
AhaeAN54_004600	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AhaeAN54_004635	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AhaeAN54_004650	COG0183	Belongs to the thiolase family
AhaeAN54_004660	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AhaeAN54_004660	COG2885	chlorophyll binding
AhaeAN54_004665	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AhaeAN54_004665	COG2885	chlorophyll binding
AhaeAN54_004670	COG1690	Belongs to the RtcB family
AhaeAN54_004675	COG0833	amino acid
AhaeAN54_004685	COG2233	PERMEase
AhaeAN54_004715	COG4772	TonB-dependent receptor
AhaeAN54_004725	COG0354	folic acid binding
AhaeAN54_004735	COG2824	Alkylphosphonate utilization operon protein PhnA
AhaeAN54_004740	COG3422	double-strand break repair
AhaeAN54_004770	COG0840	transmembrane signaling receptor activity
AhaeAN54_004775	COG0643	Histidine kinase
AhaeAN54_004775	COG2198	Histidine kinase
AhaeAN54_004775	COG0643	Histidine kinase
AhaeAN54_004775	COG2198	Histidine kinase
AhaeAN54_004790	COG5510	response to toxic substance
AhaeAN54_004800	COG2832	Protein of unknown function (DUF454)
AhaeAN54_004805	COG1376	ErfK ybiS ycfS ynhG family protein
AhaeAN54_004860	COG1289	transmembrane transporter activity
AhaeAN54_004865	COG2814	Major facilitator Superfamily
AhaeAN54_004880	COG0786	glutamate:sodium symporter activity
AhaeAN54_004885	COG1115	amino acid carrier protein
AhaeAN54_004890	COG1752	Esterase of the alpha-beta hydrolase superfamily
AhaeAN54_004895	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
AhaeAN54_004940	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_004955	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AhaeAN54_004965	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AhaeAN54_004970	COG1077	Cell shape determining protein MreB Mrl
AhaeAN54_004975	COG1792	Involved in formation and maintenance of cell shape
AhaeAN54_004985	COG0424	maF-like protein
AhaeAN54_004990	COG1530	ribonuclease E activity
AhaeAN54_005000	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AhaeAN54_005010	COG0560	Phosphoserine phosphatase
AhaeAN54_005020	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AhaeAN54_005025	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AhaeAN54_005030	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AhaeAN54_005035	COG2205	protein histidine kinase activity
AhaeAN54_005040	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_005050	COG0671	phosphoesterase, PA-phosphatase related
AhaeAN54_005060	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AhaeAN54_005085	COG1113	amino acid transport
AhaeAN54_005090	COG2828	Protein conserved in bacteria
AhaeAN54_005095	COG0142	geranyltranstransferase activity
AhaeAN54_005110	COG1752	Esterase of the alpha-beta hydrolase superfamily
AhaeAN54_005130	COG2194	sulfuric ester hydrolase activity
AhaeAN54_005135	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_005140	COG0642	Histidine kinase
AhaeAN54_005150	COG1126	abc transporter atp-binding protein
AhaeAN54_005155	COG0765	amino acid transport
AhaeAN54_005160	COG0765	amino acid transport
AhaeAN54_005170	COG0004	ammonium transporteR
AhaeAN54_005190	COG0525	valine-tRNA ligase activity
AhaeAN54_005205	COG1028	Short-chain dehydrogenase reductase Sdr
AhaeAN54_005215	COG0393	Putative heavy-metal-binding
AhaeAN54_005220	COG0393	Putative heavy-metal-binding
AhaeAN54_005225	COG1538	Outer membrane efflux protein
AhaeAN54_005235	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_005240	COG0671	phosphoesterase, PA-phosphatase related
AhaeAN54_005270	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AhaeAN54_005285	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AhaeAN54_005285	COG1648	precorrin-2 dehydrogenase activity
AhaeAN54_005290	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AhaeAN54_005300	COG1733	regulation of RNA biosynthetic process
AhaeAN54_005310	COG0531	amino acid
AhaeAN54_005325	COG0321	lipoyl(octanoyl) transferase activity
AhaeAN54_005355	COG1280	lysine exporter protein (LysE YggA)
AhaeAN54_005365	COG0500	methyltransferase
AhaeAN54_005370	COG0586	Pfam SNARE associated Golgi protein
AhaeAN54_005390	COG2009	succinate dehydrogenase
AhaeAN54_005395	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AhaeAN54_005400	COG1053	succinate dehydrogenase
AhaeAN54_005405	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AhaeAN54_005425	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AhaeAN54_005440	COG2268	Band 7 protein
AhaeAN54_005445	COG1585	Membrane protein implicated in regulation of membrane protease activity
AhaeAN54_005455	COG2354	Protein conserved in bacteria
AhaeAN54_005460	COG2321	neutral zinc metallopeptidase
AhaeAN54_005485	COG0110	maltose O-acetyltransferase activity
AhaeAN54_005505	COG0505	Belongs to the CarA family
AhaeAN54_005530	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AhaeAN54_005545	COG2304	oxidoreductase activity
AhaeAN54_005580	COG0584	glycerophosphoryl diester phosphodiesterase
AhaeAN54_005585	COG2194	sulfuric ester hydrolase activity
AhaeAN54_005590	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AhaeAN54_005595	COG2239	Acts as a magnesium transporter
AhaeAN54_005605	COG0501	Belongs to the peptidase M48B family
AhaeAN54_005610	COG0739	heme binding
AhaeAN54_005610	COG1196	nuclear chromosome segregation
AhaeAN54_005610	COG0741	lytic transglycosylase activity
AhaeAN54_005625	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AhaeAN54_005640	COG1301	dicarboxylic acid transport
AhaeAN54_005645	COG0583	DNA-binding transcription factor activity
AhaeAN54_005670	COG2885	chlorophyll binding
AhaeAN54_005685	COG3293	Transposase
AhaeAN54_005710	COG3293	Transposase
AhaeAN54_005725	COG0725	ABC transporter, periplasmic molybdate-binding protein
AhaeAN54_005730	COG4149	molybdate abc transporter
AhaeAN54_005745	COG4521	taurine ABC transporter
AhaeAN54_005750	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AhaeAN54_005755	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AhaeAN54_005760	COG2175	clavaminate synthase activity
AhaeAN54_005790	COG0589	response to stress
AhaeAN54_005805	COG0242	peptide deformylase activity
AhaeAN54_005845	COG0306	phosphate transporter
AhaeAN54_005860	COG1115	amino acid carrier protein
AhaeAN54_005870	COG0019	diaminopimelate decarboxylase activity
AhaeAN54_005875	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AhaeAN54_005885	COG1280	lysine exporter protein (LysE YggA)
AhaeAN54_005890	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AhaeAN54_005930	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_005950	COG1671	Belongs to the UPF0178 family
AhaeAN54_005975	COG4591	ABC-type transport system involved in lipoprotein release permease component
AhaeAN54_005980	COG1136	(ABC) transporter
AhaeAN54_005985	COG0658	competence protein
AhaeAN54_005985	COG2333	competence protein COMEC
AhaeAN54_005995	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AhaeAN54_005995	COG0616	signal peptide processing
AhaeAN54_006005	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AhaeAN54_006015	COG0628	permease
AhaeAN54_006055	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AhaeAN54_006075	COG0823	Involved in the tonB-independent uptake of proteins
AhaeAN54_006095	COG0824	Thioesterase
AhaeAN54_006105	COG2255	four-way junction helicase activity
AhaeAN54_006125	COG0047	phosphoribosylformylglycinamidine synthase activity
AhaeAN54_006125	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AhaeAN54_006140	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AhaeAN54_006140	COG3323	Protein of unknown function (DUF1653)
AhaeAN54_006145	COG0778	Nitroreductase
AhaeAN54_006155	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AhaeAN54_006155	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AhaeAN54_006155	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
AhaeAN54_006160	COG1105	Belongs to the carbohydrate kinase PfkB family
AhaeAN54_006165	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AhaeAN54_006165	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AhaeAN54_006170	COG1024	Enoyl-CoA hydratase
AhaeAN54_006175	COG1051	belongs to the nudix hydrolase family
AhaeAN54_006175	COG1056	cytidyltransferase-related domain
AhaeAN54_006180	COG0583	DNA-binding transcription factor activity
AhaeAN54_006185	COG1942	4-Oxalocrotonate Tautomerase
AhaeAN54_006205	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AhaeAN54_006220	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AhaeAN54_006225	COG0602	queuosine metabolic process
AhaeAN54_006240	COG0583	DNA-binding transcription factor activity
AhaeAN54_006245	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AhaeAN54_006250	COG4208	sulfate ABC transporter
AhaeAN54_006255	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AhaeAN54_006265	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AhaeAN54_006270	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AhaeAN54_006275	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AhaeAN54_006305	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_006310	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_006335	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AhaeAN54_006345	COG0481	GTPase activity
AhaeAN54_006360	COG0571	ribonuclease III activity
AhaeAN54_006365	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AhaeAN54_006380	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AhaeAN54_006435	COG0556	nucleotide-excision repair
AhaeAN54_006480	COG1840	ABC-type Fe3 transport system, periplasmic component
AhaeAN54_006485	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AhaeAN54_006505	COG0583	DNA-binding transcription factor activity
AhaeAN54_006510	COG0596	Alpha beta hydrolase
AhaeAN54_006515	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AhaeAN54_006520	COG1773	rubredoxin
AhaeAN54_006530	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AhaeAN54_006540	COG0175	sulfate reduction
AhaeAN54_006555	COG0222	ribosome binding
AhaeAN54_006560	COG1253	flavin adenine dinucleotide binding
AhaeAN54_006580	COG3015	lipoprotein NlpE involved in copper resistance
AhaeAN54_006600	COG0517	IMP dehydrogenase activity
AhaeAN54_006600	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AhaeAN54_006605	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AhaeAN54_006615	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AhaeAN54_006620	COG1137	ATPase activity
AhaeAN54_006660	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_006670	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AhaeAN54_006710	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AhaeAN54_006735	COG0204	Acyl-transferase
AhaeAN54_006740	COG4783	chaperone-mediated protein folding
AhaeAN54_006760	COG1610	YqeY-like protein
AhaeAN54_006765	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AhaeAN54_006780	COG2963	transposase activity
AhaeAN54_006785	COG2801	Transposase and inactivated derivatives
AhaeAN54_006840	COG0515	serine threonine protein kinase
AhaeAN54_006840	COG2815	serine threonine protein kinase
AhaeAN54_006860	COG0028	Belongs to the TPP enzyme family
AhaeAN54_006880	COG0482	sulfurtransferase activity
AhaeAN54_006900	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AhaeAN54_006905	COG1686	Belongs to the peptidase S11 family
AhaeAN54_006925	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AhaeAN54_006935	COG0583	DNA-binding transcription factor activity
AhaeAN54_006940	COG1067	ATP-dependent peptidase activity
AhaeAN54_006960	COG0254	rRNA binding
AhaeAN54_006980	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AhaeAN54_006985	COG1966	Carbon starvation protein
AhaeAN54_006990	COG2879	small protein
AhaeAN54_006995	COG0714	Associated with various cellular activities
AhaeAN54_007280	COG3604	Transcriptional regulator
AhaeAN54_007305	COG2144	transferase activity, transferring acyl groups
AhaeAN54_007315	COG2072	flavoprotein involved in K transport
AhaeAN54_007325	COG0582	viral genome integration into host DNA
AhaeAN54_007340	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AhaeAN54_007370	COG0732	type I restriction modification DNA specificity domain
AhaeAN54_007385	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
AhaeAN54_007425	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
AhaeAN54_007430	COG2116	formate transmembrane transporter activity
AhaeAN54_007435	COG0515	serine threonine protein kinase
AhaeAN54_007460	COG1741	Belongs to the pirin family
AhaeAN54_007475	COG0446	pyridine nucleotide-disulphide oxidoreductase
AhaeAN54_007475	COG1902	pentaerythritol trinitrate reductase activity
AhaeAN54_007485	COG0582	viral genome integration into host DNA
AhaeAN54_007625	COG1230	cation diffusion facilitator family transporter
AhaeAN54_007685	COG2814	Major facilitator Superfamily
AhaeAN54_007690	COG1238	metal cluster binding
AhaeAN54_007715	COG4804	nuclease activity
AhaeAN54_007740	COG2271	Major facilitator Superfamily
AhaeAN54_007755	COG0642	Histidine kinase
AhaeAN54_007760	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_007780	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AhaeAN54_007785	COG3604	Transcriptional regulator
AhaeAN54_007820	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AhaeAN54_007830	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AhaeAN54_007835	COG1469	GTP cyclohydrolase I activity
AhaeAN54_007850	COG0523	cobalamin synthesis protein
AhaeAN54_007855	COG1414	Transcriptional regulator
AhaeAN54_007860	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AhaeAN54_007865	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AhaeAN54_007870	COG0183	Belongs to the thiolase family
AhaeAN54_007875	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AhaeAN54_007880	COG0596	Alpha beta hydrolase
AhaeAN54_007885	COG2271	Major facilitator Superfamily
AhaeAN54_007890	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AhaeAN54_007895	COG3485	protocatechuate 3,4-dioxygenase
AhaeAN54_007900	COG3485	protocatechuate 3,4-dioxygenase
AhaeAN54_007905	COG0710	3-dehydroquinate dehydratase activity
AhaeAN54_007925	COG3659	wide pore channel activity
AhaeAN54_007950	COG2351	hydroxyisourate hydrolase activity
AhaeAN54_007955	COG2233	PERMEase
AhaeAN54_007975	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_007980	COG2186	Transcriptional regulator
AhaeAN54_007985	COG4266	Belongs to the allantoicase family
AhaeAN54_008010	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_008020	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AhaeAN54_008035	COG0583	DNA-binding transcription factor activity
AhaeAN54_008045	COG2188	Transcriptional regulator
AhaeAN54_008065	COG0010	Belongs to the arginase family
AhaeAN54_008070	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AhaeAN54_008075	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AhaeAN54_008120	COG0243	molybdopterin cofactor binding
AhaeAN54_008125	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AhaeAN54_008130	COG2837	iron assimilation
AhaeAN54_008140	COG1538	Outer membrane efflux protein
AhaeAN54_008145	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AhaeAN54_008150	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_008155	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_008160	COG5002	protein histidine kinase activity
AhaeAN54_008165	COG3040	lipid binding
AhaeAN54_008185	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AhaeAN54_008195	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AhaeAN54_008200	COG0642	Histidine kinase
AhaeAN54_008220	COG1309	transcriptional regulator
AhaeAN54_008240	COG2072	flavoprotein involved in K transport
AhaeAN54_008245	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
AhaeAN54_008250	COG1560	Kdo2-lipid A biosynthetic process
AhaeAN54_008255	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
AhaeAN54_008260	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AhaeAN54_008265	COG4770	biotin carboxylase activity
AhaeAN54_008270	COG0501	Belongs to the peptidase M48B family
AhaeAN54_008280	COG1765	OsmC-like protein
AhaeAN54_008330	COG4133	protoheme IX ABC transporter activity
AhaeAN54_008360	COG0308	aminopeptidase N
AhaeAN54_008365	COG1760	l-serine dehydratase
AhaeAN54_008385	COG1714	RDD family
AhaeAN54_008395	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AhaeAN54_008395	COG0475	glutathione-regulated potassium exporter activity
AhaeAN54_008400	COG3135	benzoate transporter
AhaeAN54_008415	COG0583	DNA-binding transcription factor activity
AhaeAN54_008435	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AhaeAN54_008465	COG0316	Belongs to the HesB IscA family
AhaeAN54_008470	COG0822	iron-sulfur transferase activity
AhaeAN54_008495	COG0776	regulation of translation
AhaeAN54_008500	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AhaeAN54_008520	COG2137	regulation of response to DNA damage stimulus
AhaeAN54_008530	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AhaeAN54_008535	COG1011	Hydrolase
AhaeAN54_008540	COG1218	3'(2'),5'-bisphosphate nucleotidase
AhaeAN54_008560	COG0268	Binds directly to 16S ribosomal RNA
AhaeAN54_008565	COG0702	epimerase
AhaeAN54_008570	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AhaeAN54_008590	COG0183	Belongs to the thiolase family
AhaeAN54_008645	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AhaeAN54_008650	COG0583	DNA-binding transcription factor activity
AhaeAN54_008655	COG0424	maF-like protein
AhaeAN54_008710	COG1286	toxin biosynthetic process
AhaeAN54_008755	COG3634	alkyl hydroperoxide reductase activity
AhaeAN54_008810	COG0436	Aminotransferase
AhaeAN54_008815	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AhaeAN54_008820	COG0386	Belongs to the glutathione peroxidase family
AhaeAN54_008830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_008855	COG1522	sequence-specific DNA binding
AhaeAN54_008865	COG0436	Aminotransferase
AhaeAN54_008890	COG1253	flavin adenine dinucleotide binding
AhaeAN54_008895	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AhaeAN54_008905	COG0012	GTP binding
AhaeAN54_008910	COG2011	ABC-type metal ion transport system permease component
AhaeAN54_008915	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AhaeAN54_008920	COG1464	Belongs to the NlpA lipoprotein family
AhaeAN54_008950	COG2195	Cleaves the N-terminal amino acid of tripeptides
AhaeAN54_008960	COG3550	peptidyl-serine autophosphorylation
AhaeAN54_009010	COG2363	Small membrane protein
AhaeAN54_009030	COG0513	Belongs to the DEAD box helicase family
AhaeAN54_009040	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AhaeAN54_009055	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AhaeAN54_009065	COG1192	Involved in chromosome partitioning
AhaeAN54_009070	COG1475	DNA binding
AhaeAN54_009075	COG0811	peptide transport
AhaeAN54_009085	COG1132	(ABC) transporter
AhaeAN54_009090	COG1663	tetraacyldisaccharide 4'-kinase activity
AhaeAN54_009115	COG0084	hydrolase, TatD family'
AhaeAN54_009160	COG0590	tRNA wobble adenosine to inosine editing
AhaeAN54_009180	COG0776	regulation of translation
AhaeAN54_009195	COG2431	L-lysine efflux transmembrane transporter activity
AhaeAN54_009210	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AhaeAN54_009215	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AhaeAN54_009255	COG0024	Methionine aminopeptidase
AhaeAN54_009260	COG0583	DNA-binding transcription factor activity
AhaeAN54_009270	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AhaeAN54_009275	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AhaeAN54_009285	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AhaeAN54_009285	COG0517	IMP dehydrogenase activity
AhaeAN54_009310	COG0552	protein localization to endoplasmic reticulum
AhaeAN54_009340	COG4890	Cyd operon protein YbgT
AhaeAN54_009345	COG1294	oxidase, subunit
AhaeAN54_009370	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AhaeAN54_009390	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AhaeAN54_009395	COG0569	domain protein
AhaeAN54_009400	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AhaeAN54_009405	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AhaeAN54_009440	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AhaeAN54_009450	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AhaeAN54_009455	COG0542	response to heat
AhaeAN54_009465	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AhaeAN54_009470	COG2267	carboxylic ester hydrolase activity
AhaeAN54_009480	COG1902	pentaerythritol trinitrate reductase activity
AhaeAN54_009480	COG0446	pyridine nucleotide-disulphide oxidoreductase
AhaeAN54_009515	COG0148	phosphopyruvate hydratase activity
AhaeAN54_009520	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AhaeAN54_009575	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AhaeAN54_009585	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AhaeAN54_009600	COG1802	Transcriptional regulator
AhaeAN54_009610	COG2207	Transcriptional regulator
AhaeAN54_009615	COG1063	alcohol dehydrogenase
AhaeAN54_009625	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AhaeAN54_009645	COG1944	ATP diphosphatase activity
AhaeAN54_009665	COG1522	sequence-specific DNA binding
AhaeAN54_009680	COG0439	Biotin carboxylase
AhaeAN54_009690	COG0864	Transcriptional regulator
AhaeAN54_009695	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_009710	COG1595	DNA-templated transcription, initiation
AhaeAN54_009780	COG0583	DNA-binding transcription factor activity
AhaeAN54_009795	COG1024	Enoyl-CoA hydratase
AhaeAN54_009800	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AhaeAN54_009805	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_009810	COG1309	transcriptional regulator
AhaeAN54_009815	COG0318	PFAM AMP-dependent synthetase and ligase
AhaeAN54_009830	COG2814	Major facilitator Superfamily
AhaeAN54_009850	COG0583	DNA-binding transcription factor activity
AhaeAN54_009860	COG4774	siderophore transport
AhaeAN54_009895	COG2249	NAD(P)H dehydrogenase (quinone) activity
AhaeAN54_009905	COG3706	GGDEF domain
AhaeAN54_009925	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AhaeAN54_009945	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AhaeAN54_009990	COG0537	adenosine 5'-monophosphoramidase activity
AhaeAN54_010020	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AhaeAN54_010040	COG0730	response to heat
AhaeAN54_010045	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AhaeAN54_010055	COG4771	TonB-dependent receptor
AhaeAN54_010075	COG0406	alpha-ribazole phosphatase activity
AhaeAN54_010080	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AhaeAN54_010095	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AhaeAN54_010110	COG2814	Major facilitator Superfamily
AhaeAN54_010155	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_010160	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_010165	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AhaeAN54_010170	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AhaeAN54_010175	COG2207	Transcriptional regulator
AhaeAN54_010180	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AhaeAN54_010215	COG0575	Belongs to the CDS family
AhaeAN54_010220	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AhaeAN54_010230	COG0528	UMP kinase activity
AhaeAN54_010240	COG3852	Histidine kinase
AhaeAN54_010245	COG2204	response regulator
AhaeAN54_010250	COG1309	transcriptional regulator
AhaeAN54_010300	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AhaeAN54_010320	COG0697	spore germination
AhaeAN54_010325	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AhaeAN54_010335	COG0303	'Molybdopterin
AhaeAN54_010340	COG0315	cyclic pyranopterin monophosphate synthase activity
AhaeAN54_010340	COG0521	Mo-molybdopterin cofactor biosynthetic process
AhaeAN54_010355	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AhaeAN54_010360	COG0243	molybdopterin cofactor binding
AhaeAN54_010365	COG3048	D-serine ammonia-lyase activity
AhaeAN54_010375	COG0243	molybdopterin cofactor binding
AhaeAN54_010380	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AhaeAN54_010385	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AhaeAN54_010385	COG2146	nitrite reductase [NAD(P)H] activity
AhaeAN54_010390	COG2223	nitrite transmembrane transporter activity
AhaeAN54_010400	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_010400	COG1116	anion transmembrane transporter activity
AhaeAN54_010415	COG0439	Biotin carboxylase
AhaeAN54_010430	COG2814	Major facilitator Superfamily
AhaeAN54_010440	COG0069	glutamate synthase activity
AhaeAN54_010460	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AhaeAN54_010465	COG1454	alcohol dehydrogenase
AhaeAN54_010480	COG2850	peptidyl-arginine hydroxylation
AhaeAN54_010510	COG0640	Transcriptional regulator
AhaeAN54_010535	COG0668	transmembrane transport
AhaeAN54_010545	COG1132	(ABC) transporter
AhaeAN54_010565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AhaeAN54_010575	COG0506	proline dehydrogenase activity
AhaeAN54_010575	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AhaeAN54_010575	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AhaeAN54_010585	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AhaeAN54_010595	COG3698	Phosphodiester glycosidase
AhaeAN54_010610	COG3153	acetyltransferase
AhaeAN54_010615	COG2353	YceI-like domain
AhaeAN54_010635	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AhaeAN54_010640	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AhaeAN54_010655	COG3042	response to heat
AhaeAN54_010675	COG1278	Cold shock
AhaeAN54_010680	COG1278	Cold shock
AhaeAN54_010700	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AhaeAN54_010700	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AhaeAN54_010725	COG3539	Fimbrial protein
AhaeAN54_010750	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_010790	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AhaeAN54_010805	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_010810	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AhaeAN54_010830	COG3501	Rhs element vgr protein
AhaeAN54_010835	COG3139	Protein of unknown function (DUF1315)
AhaeAN54_010840	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AhaeAN54_010845	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AhaeAN54_010855	COG0494	nUDIX hydrolase
AhaeAN54_010865	COG0642	Histidine kinase
AhaeAN54_010870	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_010880	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AhaeAN54_010885	COG1720	tRNA m6t6A37 methyltransferase activity
AhaeAN54_010920	COG0583	DNA-binding transcription factor activity
AhaeAN54_010925	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AhaeAN54_010935	COG2814	Major facilitator Superfamily
AhaeAN54_010940	COG4607	ABC-type enterochelin transport system periplasmic component
AhaeAN54_010945	COG4604	ABC transporter, ATP-binding protein
AhaeAN54_010950	COG4605	iron ion homeostasis
AhaeAN54_010955	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AhaeAN54_010965	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AhaeAN54_010975	COG0471	metal ion transport
AhaeAN54_011000	COG0729	surface antigen
AhaeAN54_011030	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AhaeAN54_011060	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AhaeAN54_011140	COG1131	(ABC) transporter
AhaeAN54_011145	COG0842	Transport permease protein
AhaeAN54_011160	COG0772	Belongs to the SEDS family
AhaeAN54_011165	COG2951	lytic endotransglycosylase activity
AhaeAN54_011190	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AhaeAN54_011220	COG1643	Atp-dependent helicase
AhaeAN54_011225	COG0450	alkyl hydroperoxide reductase
AhaeAN54_011235	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AhaeAN54_011255	COG3634	alkyl hydroperoxide reductase activity
AhaeAN54_011275	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AhaeAN54_011290	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AhaeAN54_011305	COG0531	amino acid
AhaeAN54_011310	COG4303	Ethanolamine ammonia lyase large subunit
AhaeAN54_011315	COG4302	ethanolamine ammonia-lyase activity
AhaeAN54_011325	COG0519	Catalyzes the synthesis of GMP from XMP
AhaeAN54_011325	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AhaeAN54_011340	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AhaeAN54_011350	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AhaeAN54_011360	COG2249	NAD(P)H dehydrogenase (quinone) activity
AhaeAN54_011370	COG0697	spore germination
AhaeAN54_011375	COG1923	regulation of RNA biosynthetic process
AhaeAN54_011385	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AhaeAN54_011390	COG0802	atpase or kinase
AhaeAN54_011420	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AhaeAN54_011425	COG3300	MHYT domain
AhaeAN54_011425	COG5001	Diguanylate cyclase
AhaeAN54_011445	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AhaeAN54_011450	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AhaeAN54_011455	COG1845	cytochrome c oxidase, subunit III
AhaeAN54_011460	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AhaeAN54_011490	COG0305	Participates in initiation and elongation during chromosome replication
AhaeAN54_011495	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AhaeAN54_011510	COG1305	Transglutaminase-like
AhaeAN54_011520	COG2308	Evidence 4 Homologs of previously reported genes of
AhaeAN54_011530	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AhaeAN54_011545	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AhaeAN54_011555	COG0582	viral genome integration into host DNA
AhaeAN54_011570	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AhaeAN54_011790	COG2357	RelA SpoT domain protein
AhaeAN54_011950	COG0527	aspartate kinase activity
AhaeAN54_011960	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AhaeAN54_011970	COG3038	cytochrome b561
AhaeAN54_011975	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AhaeAN54_011980	COG2252	PERMEase
AhaeAN54_012055	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AhaeAN54_012060	COG0138	bifunctional purine biosynthesis protein purh
AhaeAN54_012065	COG0151	Belongs to the GarS family
AhaeAN54_012070	COG1464	Belongs to the NlpA lipoprotein family
AhaeAN54_012075	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AhaeAN54_012080	COG2011	ABC-type metal ion transport system permease component
AhaeAN54_012095	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AhaeAN54_012105	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AhaeAN54_012110	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AhaeAN54_012115	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AhaeAN54_012140	COG0052	Belongs to the universal ribosomal protein uS2 family
AhaeAN54_012145	COG0024	Methionine aminopeptidase
AhaeAN54_012155	COG2223	nitrite transmembrane transporter activity
AhaeAN54_012165	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AhaeAN54_012170	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AhaeAN54_012175	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AhaeAN54_012220	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AhaeAN54_012225	COG3161	chorismate lyase activity
AhaeAN54_012230	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AhaeAN54_012235	COG2852	Protein conserved in bacteria
AhaeAN54_012255	COG0512	Glutamine amidotransferase of anthranilate synthase
AhaeAN54_012265	COG3217	Mosc domain protein beta barrel domain protein
AhaeAN54_012265	COG0633	Ferredoxin
AhaeAN54_012290	COG0302	gtp cyclohydrolase
AhaeAN54_012310	COG3739	integral membrane protein
AhaeAN54_012335	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AhaeAN54_012350	COG4172	Belongs to the ABC transporter superfamily
AhaeAN54_012355	COG4239	(ABC) transporter, permease
AhaeAN54_012360	COG4174	ABC transporter (Permease)
AhaeAN54_012365	COG4166	transmembrane transport
AhaeAN54_012370	COG1388	LysM domain
AhaeAN54_012370	COG0741	lytic transglycosylase activity
AhaeAN54_012370	COG1388	LysM domain
AhaeAN54_012370	COG0741	lytic transglycosylase activity
AhaeAN54_012375	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AhaeAN54_012385	COG2816	NAD+ diphosphatase activity
AhaeAN54_012415	COG0583	DNA-binding transcription factor activity
AhaeAN54_012420	COG1279	arginine transmembrane transporter activity
AhaeAN54_012440	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_012445	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_012450	COG0006	proline dipeptidase activity
AhaeAN54_012480	COG2217	Heavy metal translocating P-type atpase
AhaeAN54_012495	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AhaeAN54_012510	COG3384	dioxygenase
AhaeAN54_012520	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AhaeAN54_012555	COG3501	Rhs element vgr protein
AhaeAN54_012560	COG2878	Part of a membrane complex involved in electron transport
AhaeAN54_012565	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AhaeAN54_012590	COG0768	penicillin binding
AhaeAN54_012595	COG0742	ribosomal rna small subunit methyltransferase
AhaeAN54_012620	COG0616	signal peptide processing
AhaeAN54_012625	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AhaeAN54_012635	COG0573	inorganic phosphate transmembrane transporter activity
AhaeAN54_012650	COG0076	glutamate decarboxylase activity
AhaeAN54_012655	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AhaeAN54_012665	COG1309	transcriptional regulator
AhaeAN54_012695	COG0783	Belongs to the Dps family
AhaeAN54_012705	COG0564	pseudouridine synthase activity
AhaeAN54_012720	COG0352	thiamine-phosphate diphosphorylase activity
AhaeAN54_012750	COG0612	Peptidase, M16
AhaeAN54_012755	COG0384	phenazine biosynthesis protein PhzF
AhaeAN54_012790	COG1686	Belongs to the peptidase S11 family
AhaeAN54_012795	COG1252	NADH dehydrogenase
AhaeAN54_012805	COG0415	Belongs to the DNA photolyase family
AhaeAN54_012825	COG1271	oxidase subunit
AhaeAN54_012830	COG1294	oxidase, subunit
AhaeAN54_012850	COG0705	Rhomboid family
AhaeAN54_012850	COG0457	Tetratricopeptide repeat
AhaeAN54_012860	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AhaeAN54_012865	COG4181	ATPase activity
AhaeAN54_012875	COG0456	acetyltransferase
AhaeAN54_012895	COG4771	TonB-dependent receptor
AhaeAN54_012915	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AhaeAN54_012940	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AhaeAN54_012945	COG1597	lipid kinase activity
AhaeAN54_012950	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
AhaeAN54_012990	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AhaeAN54_013000	COG2388	GCN5-related N-acetyl-transferase
AhaeAN54_013025	COG3152	Membrane
AhaeAN54_013090	COG4681	YaeQ
AhaeAN54_013095	COG0523	cobalamin synthesis protein
AhaeAN54_013105	COG1607	acyl-coa hydrolase
AhaeAN54_013120	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_013130	COG2814	Major facilitator Superfamily
AhaeAN54_013135	COG1024	Enoyl-CoA hydratase
AhaeAN54_013140	COG1012	belongs to the aldehyde dehydrogenase family
AhaeAN54_013150	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_013175	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_013180	COG1414	Transcriptional regulator
AhaeAN54_013185	COG0281	malic enzyme
AhaeAN54_013190	COG0833	amino acid
AhaeAN54_013205	COG1012	belongs to the aldehyde dehydrogenase family
AhaeAN54_013215	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AhaeAN54_013220	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AhaeAN54_013230	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_013235	COG1454	alcohol dehydrogenase
AhaeAN54_013305	COG2814	Major facilitator Superfamily
AhaeAN54_013310	COG1566	PFAM secretion protein HlyD family protein
AhaeAN54_013315	COG2050	protein possibly involved in aromatic compounds catabolism
AhaeAN54_013325	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AhaeAN54_013330	COG1090	epimerase
AhaeAN54_013350	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AhaeAN54_013355	COG0420	3'-5' exonuclease activity
AhaeAN54_013385	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AhaeAN54_013390	COG2914	Belongs to the UPF0125 (RnfH) family
AhaeAN54_013405	COG0121	glutamine amidotransferase
AhaeAN54_013420	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AhaeAN54_013425	COG0756	dUTP diphosphatase activity
AhaeAN54_013430	COG0210	DNA helicase
AhaeAN54_013435	COG2885	chlorophyll binding
AhaeAN54_013440	COG0204	Acyl-transferase
AhaeAN54_013450	COG0850	regulation of cytokinetic process
AhaeAN54_013455	COG2894	cell division
AhaeAN54_013460	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AhaeAN54_013470	COG1280	lysine exporter protein (LysE YggA)
AhaeAN54_013475	COG1674	ftsk spoiiie
AhaeAN54_013475	COG0531	amino acid
AhaeAN54_013480	COG0492	ferredoxin-NADP+ reductase activity
AhaeAN54_013485	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AhaeAN54_013495	COG0456	acetyltransferase
AhaeAN54_013510	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AhaeAN54_013520	COG0049	tRNA binding
AhaeAN54_013570	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AhaeAN54_013570	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AhaeAN54_013595	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AhaeAN54_013605	COG0582	viral genome integration into host DNA
AhaeAN54_013680	COG2132	Multicopper oxidase
AhaeAN54_013695	COG2205	protein histidine kinase activity
AhaeAN54_013700	COG2217	Heavy metal translocating P-type atpase
AhaeAN54_013820	COG0564	pseudouridine synthase activity
AhaeAN54_013830	COG0358	DNA primase activity
AhaeAN54_013865	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AhaeAN54_013880	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AhaeAN54_013915	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AhaeAN54_013925	COG0352	thiamine-phosphate diphosphorylase activity
AhaeAN54_013925	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AhaeAN54_013925	COG0351	phosphomethylpyrimidine kinase
AhaeAN54_013945	COG1652	LysM domain
AhaeAN54_013975	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AhaeAN54_013980	COG1399	metal-binding, possibly nucleic acid-binding protein
AhaeAN54_013985	COG3101	peptidyl-lysine hydroxylation
AhaeAN54_013990	COG0009	L-threonylcarbamoyladenylate synthase
AhaeAN54_014010	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AhaeAN54_014015	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AhaeAN54_014050	COG4166	transmembrane transport
AhaeAN54_014095	COG4106	trans-aconitate 2-methyltransferase activity
AhaeAN54_014115	COG0596	Alpha beta hydrolase
AhaeAN54_014125	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AhaeAN54_014140	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AhaeAN54_014150	COG1196	nuclear chromosome segregation
AhaeAN54_014160	COG0730	response to heat
AhaeAN54_014185	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AhaeAN54_014245	COG0489	protein tyrosine kinase activity
AhaeAN54_014265	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AhaeAN54_014265	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AhaeAN54_014305	COG2515	1-aminocyclopropane-1-carboxylate deaminase
AhaeAN54_014310	COG2081	HI0933 family
AhaeAN54_014315	COG0668	transmembrane transport
AhaeAN54_014335	COG0583	DNA-binding transcription factor activity
AhaeAN54_014370	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AhaeAN54_014375	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AhaeAN54_014380	COG0713	ATP synthesis coupled electron transport
AhaeAN54_014390	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AhaeAN54_014405	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AhaeAN54_014415	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AhaeAN54_014415	COG0649	NAD binding
AhaeAN54_014425	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AhaeAN54_014450	COG2205	protein histidine kinase activity
AhaeAN54_014455	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_014470	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AhaeAN54_014500	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AhaeAN54_014505	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AhaeAN54_014510	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AhaeAN54_014515	COG2076	Multidrug Resistance protein
AhaeAN54_014535	COG2132	Multicopper oxidase
AhaeAN54_014545	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AhaeAN54_014570	COG1968	undecaprenyl-diphosphatase activity
AhaeAN54_014575	COG1214	PFAM Peptidase M22, glycoprotease
AhaeAN54_014585	COG0494	nUDIX hydrolase
AhaeAN54_014625	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AhaeAN54_014635	COG1595	DNA-templated transcription, initiation
AhaeAN54_014640	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AhaeAN54_014645	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AhaeAN54_014710	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AhaeAN54_014720	COG1764	response to oxidative stress
AhaeAN54_014745	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AhaeAN54_014745	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AhaeAN54_014760	COG0037	tRNA processing
AhaeAN54_014770	COG0248	Ppx GppA phosphatase
AhaeAN54_014795	COG0072	phenylalanine-tRNA ligase activity
AhaeAN54_014815	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AhaeAN54_014825	COG1238	metal cluster binding
AhaeAN54_014840	COG0625	glutathione transferase activity
AhaeAN54_014860	COG0318	PFAM AMP-dependent synthetase and ligase
AhaeAN54_014865	COG3028	Belongs to the UPF0307 family
AhaeAN54_014890	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AhaeAN54_014895	COG0617	tRNA 3'-terminal CCA addition
AhaeAN54_014900	COG1555	photosystem II stabilization
AhaeAN54_014905	COG3956	TIGRFAM MazG family protein
AhaeAN54_014945	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AhaeAN54_014965	COG0784	Response regulator, receiver
AhaeAN54_014965	COG5002	protein histidine kinase activity
AhaeAN54_014965	COG2205	protein histidine kinase activity
AhaeAN54_014970	COG1024	Enoyl-CoA hydratase
AhaeAN54_014975	COG2084	Dehydrogenase
AhaeAN54_014980	COG3622	Belongs to the hyi family
AhaeAN54_015000	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AhaeAN54_015005	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AhaeAN54_015010	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AhaeAN54_015015	COG0789	Transcriptional regulator
AhaeAN54_015025	COG2814	Major facilitator Superfamily
AhaeAN54_015030	COG5285	phytanoyl-CoA dioxygenase
AhaeAN54_015040	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AhaeAN54_015045	COG0456	acetyltransferase
AhaeAN54_015055	COG0431	NADPH-dependent FMN reductase
AhaeAN54_015060	COG0798	PFAM Bile acid sodium symporter
AhaeAN54_015070	COG0640	Transcriptional regulator
AhaeAN54_015090	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AhaeAN54_015110	COG0732	type I restriction modification DNA specificity domain
AhaeAN54_015120	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AhaeAN54_015220	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AhaeAN54_015230	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AhaeAN54_015245	COG0084	hydrolase, TatD family'
AhaeAN54_015260	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AhaeAN54_015340	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AhaeAN54_015345	COG0440	acetolactate synthase activity
AhaeAN54_015350	COG0028	Belongs to the TPP enzyme family
AhaeAN54_015370	COG1466	dna polymerase III delta subunit
AhaeAN54_015375	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_015380	COG1136	(ABC) transporter
AhaeAN54_015380	COG0577	efflux transmembrane transporter activity
AhaeAN54_015385	COG1538	Outer membrane efflux protein
AhaeAN54_015400	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_015425	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AhaeAN54_015430	COG1162	GTPase activity
AhaeAN54_015440	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AhaeAN54_015465	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AhaeAN54_015475	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AhaeAN54_015485	COG3781	membrane
AhaeAN54_015520	COG1666	GTP binding
AhaeAN54_015535	COG1956	GAF domain-containing protein
AhaeAN54_015540	COG1607	acyl-coa hydrolase
AhaeAN54_015555	COG3453	Protein conserved in bacteria
AhaeAN54_015555	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AhaeAN54_015595	COG1183	phosphatidylcholine synthase activity
AhaeAN54_015600	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AhaeAN54_015630	COG0741	lytic transglycosylase activity
AhaeAN54_015630	COG0739	heme binding
AhaeAN54_015630	COG1196	nuclear chromosome segregation
AhaeAN54_015640	COG1702	phosphate starvation-inducible protein PhoH
AhaeAN54_015655	COG4773	Receptor
AhaeAN54_015720	COG0788	formyltetrahydrofolate deformylase activity
AhaeAN54_015735	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AhaeAN54_015740	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AhaeAN54_015745	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AhaeAN54_015745	COG4651	solute:proton antiporter activity
AhaeAN54_015765	COG0210	DNA helicase
AhaeAN54_015790	COG1733	regulation of RNA biosynthetic process
AhaeAN54_015815	COG1560	Kdo2-lipid A biosynthetic process
AhaeAN54_015870	COG0473	3-isopropylmalate dehydrogenase activity
AhaeAN54_015905	COG0494	nUDIX hydrolase
AhaeAN54_015920	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
AhaeAN54_015940	COG0625	glutathione transferase activity
AhaeAN54_015955	COG0564	pseudouridine synthase activity
AhaeAN54_015965	COG1530	ribonuclease E activity
AhaeAN54_015980	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AhaeAN54_015990	COG0534	Mate efflux family protein
AhaeAN54_015995	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AhaeAN54_016020	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AhaeAN54_016045	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AhaeAN54_016095	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AhaeAN54_016110	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AhaeAN54_016120	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
AhaeAN54_016120	COG0644	oxidoreductase
AhaeAN54_016125	COG0425	Belongs to the sulfur carrier protein TusA family
AhaeAN54_016130	COG4535	Mg2 and Co2 transporter CorC
AhaeAN54_016135	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AhaeAN54_016165	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AhaeAN54_016175	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AhaeAN54_016190	COG0789	Transcriptional regulator
AhaeAN54_016195	COG0598	Magnesium transport protein CorA
AhaeAN54_016200	COG1185	polyribonucleotide nucleotidyltransferase activity
AhaeAN54_016205	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AhaeAN54_016215	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AhaeAN54_016220	COG1074	ATP-dependent DNA helicase activity
AhaeAN54_016225	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AhaeAN54_016285	COG1116	anion transmembrane transporter activity
AhaeAN54_016290	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_016300	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AhaeAN54_016315	COG2111	Na H antiporter
AhaeAN54_016315	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AhaeAN54_016320	COG1006	Multisubunit Na H antiporter MnhC subunit
AhaeAN54_016325	COG0651	ATP synthesis coupled electron transport
AhaeAN54_016335	COG2212	antiporter activity
AhaeAN54_016360	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AhaeAN54_016370	COG0195	Participates in both transcription termination and antitermination
AhaeAN54_016415	COG0237	dephospho-CoA kinase activity
AhaeAN54_016430	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AhaeAN54_016440	COG0497	DNA recombination
AhaeAN54_016450	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AhaeAN54_016475	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AhaeAN54_016530	COG1132	(ABC) transporter
AhaeAN54_016540	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AhaeAN54_016555	COG0326	Molecular chaperone. Has ATPase activity
AhaeAN54_016565	COG2056	Na+-H+ antiporter family
AhaeAN54_016615	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AhaeAN54_016625	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AhaeAN54_016635	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AhaeAN54_016665	COG0546	phosphoglycolate phosphatase activity
AhaeAN54_016715	COG0181	hydroxymethylbilane synthase activity
AhaeAN54_016725	COG3275	phosphorelay sensor kinase activity
AhaeAN54_016750	COG0494	nUDIX hydrolase
AhaeAN54_016760	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AhaeAN54_016765	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AhaeAN54_016770	COG0772	Belongs to the SEDS family
AhaeAN54_016795	COG4974	Belongs to the 'phage' integrase family
AhaeAN54_016800	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AhaeAN54_016810	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AhaeAN54_016815	COG1686	Belongs to the peptidase S11 family
AhaeAN54_016820	COG2197	response regulator
AhaeAN54_016835	COG0793	Belongs to the peptidase S41A family
AhaeAN54_016840	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AhaeAN54_016845	COG0795	lipopolysaccharide-transporting ATPase activity
AhaeAN54_016850	COG0795	lipopolysaccharide-transporting ATPase activity
AhaeAN54_016890	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AhaeAN54_016890	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AhaeAN54_016895	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AhaeAN54_016900	COG0004	ammonium transporteR
AhaeAN54_016905	COG0347	Belongs to the P(II) protein family
AhaeAN54_016935	COG0659	secondary active sulfate transmembrane transporter activity
AhaeAN54_016940	COG0589	response to stress
AhaeAN54_016950	COG0640	Transcriptional regulator
AhaeAN54_016960	COG0798	PFAM Bile acid sodium symporter
AhaeAN54_016965	COG0431	NADPH-dependent FMN reductase
AhaeAN54_016970	COG0492	ferredoxin-NADP+ reductase activity
AhaeAN54_016975	COG2072	flavoprotein involved in K transport
AhaeAN54_017005	COG0606	chelatase, subunit chli
AhaeAN54_017040	COG0318	PFAM AMP-dependent synthetase and ligase
AhaeAN54_017055	COG2860	membrane
AhaeAN54_017065	COG1253	flavin adenine dinucleotide binding
AhaeAN54_017085	COG2814	Major facilitator Superfamily
AhaeAN54_017095	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AhaeAN54_017120	COG2814	Major facilitator Superfamily
AhaeAN54_017130	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AhaeAN54_017135	COG1283	sodium-dependent phosphate transmembrane transporter activity
AhaeAN54_017165	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AhaeAN54_017185	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AhaeAN54_017190	COG3162	membrane
AhaeAN54_017195	COG2205	protein histidine kinase activity
AhaeAN54_017270	COG4584	PFAM Integrase catalytic
AhaeAN54_017270	COG2390	Transcriptional regulator
AhaeAN54_017275	COG1484	DNA-dependent DNA replication
AhaeAN54_017300	COG1652	LysM domain
AhaeAN54_017305	COG0758	DNA mediated transformation
AhaeAN54_017320	COG1309	transcriptional regulator
AhaeAN54_017325	COG2814	Major facilitator Superfamily
AhaeAN54_017335	COG0386	Belongs to the glutathione peroxidase family
AhaeAN54_017370	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AhaeAN54_017380	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AhaeAN54_017420	COG1121	(ABC) transporter
AhaeAN54_017425	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AhaeAN54_017435	COG1280	lysine exporter protein (LysE YggA)
AhaeAN54_017440	COG2837	iron assimilation
AhaeAN54_017475	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AhaeAN54_017480	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AhaeAN54_017495	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AhaeAN54_017495	COG0519	Catalyzes the synthesis of GMP from XMP
AhaeAN54_017500	COG4399	Belongs to the UPF0754 family
AhaeAN54_017510	COG2259	Doxx family
AhaeAN54_017515	COG0586	Pfam SNARE associated Golgi protein
AhaeAN54_017530	COG1192	Involved in chromosome partitioning
AhaeAN54_017540	COG0271	Belongs to the BolA IbaG family
AhaeAN54_017575	COG3756	Protein conserved in bacteria
AhaeAN54_017585	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AhaeAN54_017795	COG1252	NADH dehydrogenase
AhaeAN54_017800	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AhaeAN54_017850	COG0154	amidase activity
AhaeAN54_017880	COG2337	Toxic component of a toxin-antitoxin (TA) module
AhaeAN54_017885	COG2336	PFAM SpoVT AbrB
AhaeAN54_017940	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AhaeAN54_018005	COG1192	Involved in chromosome partitioning
AhaeAN54_018065	COG0739	heme binding
AhaeAN54_018065	COG1196	nuclear chromosome segregation
AhaeAN54_018065	COG0741	lytic transglycosylase activity
AhaeAN54_018080	COG0741	lytic transglycosylase activity
AhaeAN54_018080	COG1196	nuclear chromosome segregation
AhaeAN54_018080	COG0739	heme binding
AhaeAN54_018105	COG1525	nuclease
AhaeAN54_018150	COG1324	tolerance protein
AhaeAN54_018155	COG0673	inositol 2-dehydrogenase activity