locus-tag	class	description
BSR56_00010	COG0592	DNA-directed DNA polymerase activity
BSR56_00020	COG0187	DNA topoisomerase II activity
BSR56_00025	COG0586	Pfam SNARE associated Golgi protein
BSR56_00030	COG0488	(ABC) transporter
BSR56_00055	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BSR56_00060	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BSR56_00100	COG3273	potassium ion transport
BSR56_00100	COG0471	metal ion transport
BSR56_00110	COG1012	belongs to the aldehyde dehydrogenase family
BSR56_00115	COG3738	Protein conserved in bacteria
BSR56_00125	COG0733	neurotransmitter:sodium symporter activity
BSR56_00165	COG2233	PERMEase
BSR56_00190	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR56_00205	COG0484	heat shock protein binding
BSR56_00220	COG2814	Major facilitator Superfamily
BSR56_00225	COG0656	L-ascorbic acid biosynthetic process
BSR56_00230	COG0583	DNA-binding transcription factor activity
BSR56_00245	COG1064	alcohol dehydrogenase
BSR56_00250	COG2818	Glycosylase
BSR56_00265	COG1194	a g-specific adenine glycosylase
BSR56_00280	COG5487	UPF0391 membrane protein
BSR56_00285	COG2983	Belongs to the UPF0260 family
BSR56_00290	COG2133	pyrroloquinoline quinone binding
BSR56_00300	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BSR56_00310	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BSR56_00320	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BSR56_00325	COG1335	isochorismatase
BSR56_00330	COG1522	sequence-specific DNA binding
BSR56_00340	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BSR56_00350	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BSR56_00355	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BSR56_00360	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BSR56_00380	COG3830	Belongs to the UPF0237 family
BSR56_00380	COG0560	Phosphoserine phosphatase
BSR56_00405	COG0753	catalase activity
BSR56_00435	COG1278	Cold shock
BSR56_00490	COG0436	Aminotransferase
BSR56_00500	COG2733	membrane
BSR56_00515	COG2918	glutathione biosynthetic process
BSR56_00530	COG3150	esterase
BSR56_00545	COG0559	Belongs to the binding-protein-dependent transport system permease family
BSR56_00560	COG0410	ABC transporter
BSR56_00570	COG1247	-acetyltransferase
BSR56_00575	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_00605	COG0625	glutathione transferase activity
BSR56_00625	COG1393	Belongs to the ArsC family
BSR56_00630	COG0708	Exodeoxyribonuclease III
BSR56_00655	COG0300	oxidoreductase activity
BSR56_00690	COG0386	Belongs to the glutathione peroxidase family
BSR56_00695	COG0189	ligase activity
BSR56_00715	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BSR56_00725	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BSR56_00750	COG0508	dehydrogenase complex catalyzes the overall conversion of
BSR56_00760	COG2119	membrane
BSR56_00770	COG0426	domain, Protein
BSR56_00770	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR56_00795	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BSR56_00820	COG1902	pentaerythritol trinitrate reductase activity
BSR56_00825	COG1519	Transferase
BSR56_00835	COG0668	transmembrane transport
BSR56_00840	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BSR56_00870	COG3706	GGDEF domain
BSR56_00895	COG0351	phosphomethylpyrimidine kinase
BSR56_00895	COG0352	thiamine-phosphate diphosphorylase activity
BSR56_00895	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BSR56_00905	COG2814	Major facilitator Superfamily
BSR56_00940	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BSR56_00945	COG1012	belongs to the aldehyde dehydrogenase family
BSR56_00955	COG1335	isochorismatase
BSR56_00965	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
BSR56_00980	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BSR56_01015	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_01045	COG3158	transport of potassium into the cell
BSR56_01075	COG0107	imidazoleglycerol-phosphate synthase activity
BSR56_01080	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BSR56_01100	COG0659	secondary active sulfate transmembrane transporter activity
BSR56_01130	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BSR56_01165	COG0427	acetyl-CoA hydrolase
BSR56_01170	COG2205	protein histidine kinase activity
BSR56_01175	COG0745	RESPONSE REGULATOR receiver
BSR56_01205	COG1028	Short-chain dehydrogenase reductase Sdr
BSR56_01210	COG0583	DNA-binding transcription factor activity
BSR56_01220	COG0789	Transcriptional regulator
BSR56_01225	COG3320	Male sterility
BSR56_01225	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BSR56_01230	COG4221	oxidoreductase activity
BSR56_01240	COG0488	(ABC) transporter
BSR56_01315	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_01365	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BSR56_01375	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_01415	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_01420	COG0582	viral genome integration into host DNA
BSR56_01425	COG0582	viral genome integration into host DNA
BSR56_01505	COG0833	amino acid
BSR56_01530	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BSR56_01550	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BSR56_01555	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BSR56_01560	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BSR56_01565	COG2226	methyltransferase
BSR56_01615	COG0067	glutamate synthase
BSR56_01615	COG0070	glutamate synthase
BSR56_01615	COG0069	glutamate synthase activity
BSR56_01620	COG0493	'glutamate synthase
BSR56_01640	COG1704	LemA family
BSR56_01645	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BSR56_01715	COG3620	sequence-specific DNA binding
BSR56_01780	COG4636	protein conserved in cyanobacteria
BSR56_01785	COG3307	-O-antigen
BSR56_01795	COG2906	2 iron, 2 sulfur cluster binding
BSR56_01805	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BSR56_01815	COG0194	GDP metabolic process
BSR56_01820	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BSR56_01860	COG0228	four-way junction DNA binding
BSR56_01865	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BSR56_01875	COG0335	large ribosomal subunit rRNA binding
BSR56_01885	COG5380	lipid catabolic process
BSR56_01890	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BSR56_01920	COG0741	lytic transglycosylase activity
BSR56_01920	COG1196	nuclear chromosome segregation
BSR56_01920	COG0739	heme binding
BSR56_01925	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BSR56_01930	COG0277	FAD linked oxidase domain protein
BSR56_01945	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
BSR56_01950	COG2249	NAD(P)H dehydrogenase (quinone) activity
BSR56_01970	COG0628	permease
BSR56_01975	COG1192	Involved in chromosome partitioning
BSR56_01985	COG2226	methyltransferase
BSR56_02025	COG2072	flavoprotein involved in K transport
BSR56_02065	COG0471	metal ion transport
BSR56_02075	COG1983	PspC domain protein
BSR56_02085	COG1960	acyl-CoA dehydrogenase activity
BSR56_02140	COG1127	ABC transporter
BSR56_02145	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BSR56_02150	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BSR56_02155	COG2854	intermembrane phospholipid transfer
BSR56_02170	COG0598	Magnesium transport protein CorA
BSR56_02185	COG1040	competence protein
BSR56_02190	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BSR56_02205	COG2937	Belongs to the GPAT DAPAT family
BSR56_02210	COG1946	Acyl-CoA thioesterase
BSR56_02215	COG1301	dicarboxylic acid transport
BSR56_02240	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BSR56_02240	COG1017	nitric oxide dioxygenase activity
BSR56_02245	COG0433	COG0433 Predicted ATPase
BSR56_02265	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BSR56_02285	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BSR56_02370	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BSR56_02380	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BSR56_02395	COG0203	ribosomal protein L17
BSR56_02415	COG1960	acyl-CoA dehydrogenase activity
BSR56_02420	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BSR56_02445	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
BSR56_02465	COG0339	signal peptide processing
BSR56_02470	COG0557	exoribonuclease II activity
BSR56_02530	COG0179	Fumarylacetoacetate (FAA) hydrolase
BSR56_02535	COG2207	Transcriptional regulator
BSR56_02545	COG1295	ribonuclease BN
BSR56_02575	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BSR56_02610	COG2813	Specifically methylates the guanine in position
BSR56_02610	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BSR56_02620	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BSR56_02630	COG3128	pkhd-type hydroxylase
BSR56_02635	COG4774	siderophore transport
BSR56_02640	COG4771	TonB-dependent receptor
BSR56_02650	COG0740	serine-type endopeptidase activity
BSR56_02670	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
BSR56_02670	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
BSR56_02675	COG2207	Transcriptional regulator
BSR56_02675	COG1917	Cupin 2, conserved barrel domain protein
BSR56_02680	COG0697	spore germination
BSR56_02690	COG0280	phosphate acetyltransferase
BSR56_02690	COG0857	belongs to the CobB CobQ family
BSR56_02695	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BSR56_02720	COG0793	Belongs to the peptidase S41A family
BSR56_02740	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BSR56_02750	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BSR56_02755	COG1408	metallophosphoesterase
BSR56_02765	COG2199	diguanylate cyclase activity
BSR56_02815	COG3453	Protein conserved in bacteria
BSR56_02815	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BSR56_02830	COG1607	acyl-coa hydrolase
BSR56_02835	COG1956	GAF domain-containing protein
BSR56_02850	COG1666	GTP binding
BSR56_02885	COG3781	membrane
BSR56_02895	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BSR56_02920	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BSR56_02930	COG1162	GTPase activity
BSR56_02935	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BSR56_02960	COG2801	Transposase and inactivated derivatives
BSR56_02970	COG1538	Outer membrane efflux protein
BSR56_02975	COG1136	(ABC) transporter
BSR56_02975	COG0577	efflux transmembrane transporter activity
BSR56_02980	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR56_02985	COG1466	dna polymerase III delta subunit
BSR56_03005	COG0028	Belongs to the TPP enzyme family
BSR56_03010	COG0440	acetolactate synthase activity
BSR56_03015	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BSR56_03050	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BSR56_03060	COG0726	polysaccharide deacetylase
BSR56_03065	COG0084	hydrolase, TatD family'
BSR56_03075	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BSR56_03085	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BSR56_03095	COG0640	Transcriptional regulator
BSR56_03105	COG0798	PFAM Bile acid sodium symporter
BSR56_03120	COG0456	acetyltransferase
BSR56_03125	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BSR56_03135	COG5285	phytanoyl-CoA dioxygenase
BSR56_03140	COG2814	Major facilitator Superfamily
BSR56_03150	COG0789	Transcriptional regulator
BSR56_03160	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BSR56_03165	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BSR56_03170	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BSR56_03185	COG3622	Belongs to the hyi family
BSR56_03190	COG2084	Dehydrogenase
BSR56_03200	COG5002	protein histidine kinase activity
BSR56_03200	COG0784	Response regulator, receiver
BSR56_03200	COG2205	protein histidine kinase activity
BSR56_03220	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BSR56_03240	COG3956	TIGRFAM MazG family protein
BSR56_03245	COG1555	photosystem II stabilization
BSR56_03250	COG0617	tRNA 3'-terminal CCA addition
BSR56_03255	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BSR56_03280	COG3028	Belongs to the UPF0307 family
BSR56_03285	COG0318	PFAM AMP-dependent synthetase and ligase
BSR56_03305	COG0625	glutathione transferase activity
BSR56_03320	COG1238	metal cluster binding
BSR56_03330	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BSR56_03355	COG0072	phenylalanine-tRNA ligase activity
BSR56_03380	COG0248	Ppx GppA phosphatase
BSR56_03390	COG0037	tRNA processing
BSR56_03405	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BSR56_03405	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BSR56_03430	COG1764	response to oxidative stress
BSR56_03440	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BSR56_03485	COG3273	potassium ion transport
BSR56_03485	COG0471	metal ion transport
BSR56_03515	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BSR56_03520	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BSR56_03525	COG1595	DNA-templated transcription, initiation
BSR56_03535	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BSR56_03560	COG0494	nUDIX hydrolase
BSR56_03570	COG1214	PFAM Peptidase M22, glycoprotease
BSR56_03575	COG1968	undecaprenyl-diphosphatase activity
BSR56_03600	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BSR56_03610	COG2132	Multicopper oxidase
BSR56_03630	COG2076	Multidrug Resistance protein
BSR56_03635	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BSR56_03640	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
BSR56_03680	COG1063	alcohol dehydrogenase
BSR56_03700	COG1309	transcriptional regulator
BSR56_03705	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BSR56_03710	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BSR56_03720	COG2814	Major facilitator Superfamily
BSR56_03745	COG0625	glutathione transferase activity
BSR56_03755	COG1113	amino acid transport
BSR56_03775	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_03780	COG5290	Psort location Cytoplasmic, score
BSR56_03785	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BSR56_03805	COG0745	RESPONSE REGULATOR receiver
BSR56_03810	COG2205	protein histidine kinase activity
BSR56_03825	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BSR56_03835	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BSR56_03835	COG0649	NAD binding
BSR56_03845	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BSR56_03860	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BSR56_03870	COG0713	ATP synthesis coupled electron transport
BSR56_03880	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BSR56_03900	COG0583	DNA-binding transcription factor activity
BSR56_03920	COG0668	transmembrane transport
BSR56_03925	COG2081	HI0933 family
BSR56_03930	COG2515	1-aminocyclopropane-1-carboxylate deaminase
BSR56_03950	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BSR56_03960	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_03970	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BSR56_03970	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BSR56_04005	COG0489	protein tyrosine kinase activity
BSR56_04105	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BSR56_04125	COG0730	response to heat
BSR56_04135	COG1196	nuclear chromosome segregation
BSR56_04150	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BSR56_04165	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BSR56_04170	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BSR56_04170	COG0596	Alpha beta hydrolase
BSR56_04170	COG2226	methyltransferase
BSR56_04185	COG4106	trans-aconitate 2-methyltransferase activity
BSR56_04230	COG0747	negative chemotaxis
BSR56_04260	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BSR56_04265	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BSR56_04280	COG0009	L-threonylcarbamoyladenylate synthase
BSR56_04285	COG3101	peptidyl-lysine hydroxylation
BSR56_04290	COG1399	metal-binding, possibly nucleic acid-binding protein
BSR56_04295	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BSR56_04320	COG1652	LysM domain
BSR56_04325	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BSR56_04325	COG0352	thiamine-phosphate diphosphorylase activity
BSR56_04325	COG0351	phosphomethylpyrimidine kinase
BSR56_04335	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BSR56_04370	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BSR56_04400	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BSR56_04415	COG0358	DNA primase activity
BSR56_04425	COG0564	pseudouridine synthase activity
BSR56_04535	COG2205	protein histidine kinase activity
BSR56_04550	COG2132	Multicopper oxidase
BSR56_04605	COG0582	viral genome integration into host DNA
BSR56_04615	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BSR56_04640	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BSR56_04640	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BSR56_04670	COG0049	tRNA binding
BSR56_04680	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BSR56_04695	COG0456	acetyltransferase
BSR56_04705	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BSR56_04710	COG0492	ferredoxin-NADP+ reductase activity
BSR56_04715	COG1674	ftsk spoiiie
BSR56_04720	COG1280	lysine exporter protein (LysE YggA)
BSR56_04730	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BSR56_04735	COG2894	cell division
BSR56_04740	COG0850	regulation of cytokinetic process
BSR56_04750	COG0204	Acyl-transferase
BSR56_04755	COG2885	chlorophyll binding
BSR56_04760	COG0210	DNA helicase
BSR56_04765	COG0756	dUTP diphosphatase activity
BSR56_04770	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BSR56_04785	COG0121	glutamine amidotransferase
BSR56_04800	COG2914	Belongs to the UPF0125 (RnfH) family
BSR56_04805	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BSR56_04835	COG0420	3'-5' exonuclease activity
BSR56_04860	COG1090	epimerase
BSR56_04865	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BSR56_04875	COG2050	protein possibly involved in aromatic compounds catabolism
BSR56_04880	COG1566	PFAM secretion protein HlyD family protein
BSR56_04885	COG2814	Major facilitator Superfamily
BSR56_04910	COG0625	glutathione transferase activity
BSR56_04935	COG1454	alcohol dehydrogenase
BSR56_04940	COG1960	acyl-CoA dehydrogenase activity
BSR56_04950	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BSR56_04955	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BSR56_04965	COG1012	belongs to the aldehyde dehydrogenase family
BSR56_04980	COG0833	amino acid
BSR56_04985	COG0281	malic enzyme
BSR56_05000	COG1607	acyl-coa hydrolase
BSR56_05010	COG0523	cobalamin synthesis protein
BSR56_05015	COG4681	YaeQ
BSR56_05080	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BSR56_05090	COG2801	Transposase and inactivated derivatives
BSR56_05160	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_05175	COG3152	Membrane
BSR56_05200	COG2388	GCN5-related N-acetyl-transferase
BSR56_05210	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BSR56_05240	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
BSR56_05245	COG1597	lipid kinase activity
BSR56_05250	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BSR56_05280	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BSR56_05315	COG3293	Transposase
BSR56_05340	COG0456	acetyltransferase
BSR56_05350	COG4181	ATPase activity
BSR56_05355	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BSR56_05385	COG1294	oxidase, subunit
BSR56_05390	COG1271	oxidase subunit
BSR56_05415	COG0415	Belongs to the DNA photolyase family
BSR56_05425	COG1252	NADH dehydrogenase
BSR56_05430	COG1686	Belongs to the peptidase S11 family
BSR56_05465	COG0384	phenazine biosynthesis protein PhzF
BSR56_05470	COG0612	Peptidase, M16
BSR56_05505	COG0352	thiamine-phosphate diphosphorylase activity
BSR56_05530	COG0564	pseudouridine synthase activity
BSR56_05540	COG0783	Belongs to the Dps family
BSR56_05570	COG1309	transcriptional regulator
BSR56_05580	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BSR56_05610	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BSR56_05615	COG0616	signal peptide processing
BSR56_05640	COG0742	ribosomal rna small subunit methyltransferase
BSR56_05645	COG0768	penicillin binding
BSR56_05670	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BSR56_05675	COG2878	Part of a membrane complex involved in electron transport
BSR56_05705	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_05715	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_05720	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_05740	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BSR56_05755	COG3384	dioxygenase
BSR56_05770	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BSR56_05790	COG2217	Heavy metal translocating P-type atpase
BSR56_05820	COG0006	proline dipeptidase activity
BSR56_05830	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BSR56_05835	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BSR56_05880	COG2816	NAD+ diphosphatase activity
BSR56_05890	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BSR56_05895	COG0741	lytic transglycosylase activity
BSR56_05895	COG1388	LysM domain
BSR56_05895	COG1388	LysM domain
BSR56_05895	COG0741	lytic transglycosylase activity
BSR56_05900	COG4166	transmembrane transport
BSR56_05905	COG4174	ABC transporter (Permease)
BSR56_05910	COG4239	(ABC) transporter, permease
BSR56_05915	COG4172	Belongs to the ABC transporter superfamily
BSR56_05925	COG0582	viral genome integration into host DNA
BSR56_05980	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BSR56_05990	COG2203	Gaf domain
BSR56_05990	COG3706	GGDEF domain
BSR56_05990	COG4251	negative regulation of phosphorylation
BSR56_05990	COG5001	Diguanylate cyclase
BSR56_06005	COG3739	integral membrane protein
BSR56_06025	COG0302	gtp cyclohydrolase
BSR56_06050	COG0633	Ferredoxin
BSR56_06050	COG3217	Mosc domain protein beta barrel domain protein
BSR56_06060	COG0512	Glutamine amidotransferase of anthranilate synthase
BSR56_06080	COG2852	Protein conserved in bacteria
BSR56_06085	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
BSR56_06090	COG3161	chorismate lyase activity
BSR56_06095	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BSR56_06130	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BSR56_06135	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BSR56_06140	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BSR56_06150	COG2223	nitrite transmembrane transporter activity
BSR56_06170	COG0024	Methionine aminopeptidase
BSR56_06175	COG0052	Belongs to the universal ribosomal protein uS2 family
BSR56_06200	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BSR56_06205	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BSR56_06210	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BSR56_06245	COG2011	ABC-type metal ion transport system permease component
BSR56_06250	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BSR56_06255	COG1464	Belongs to the NlpA lipoprotein family
BSR56_06260	COG0151	Belongs to the GarS family
BSR56_06265	COG0138	bifunctional purine biosynthesis protein purh
BSR56_06270	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BSR56_06310	COG2252	PERMEase
BSR56_06315	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BSR56_06320	COG3038	cytochrome b561
BSR56_06335	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BSR56_06345	COG0527	aspartate kinase activity
BSR56_06355	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BSR56_06370	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BSR56_06380	COG2308	Evidence 4 Homologs of previously reported genes of
BSR56_06390	COG1305	Transglutaminase-like
BSR56_06405	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BSR56_06410	COG0305	Participates in initiation and elongation during chromosome replication
BSR56_06415	COG1733	regulation of RNA biosynthetic process
BSR56_06420	COG2249	NAD(P)H dehydrogenase (quinone) activity
BSR56_06445	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BSR56_06450	COG1845	cytochrome c oxidase, subunit III
BSR56_06455	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BSR56_06460	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BSR56_06480	COG3300	MHYT domain
BSR56_06480	COG5001	Diguanylate cyclase
BSR56_06485	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BSR56_06515	COG0802	atpase or kinase
BSR56_06520	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BSR56_06530	COG1923	regulation of RNA biosynthetic process
BSR56_06535	COG0697	spore germination
BSR56_06540	COG0778	Nitroreductase
BSR56_06545	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BSR56_06555	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BSR56_06560	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BSR56_06560	COG0519	Catalyzes the synthesis of GMP from XMP
BSR56_06570	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BSR56_06585	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BSR56_06605	COG3634	alkyl hydroperoxide reductase activity
BSR56_06625	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BSR56_06635	COG0450	alkyl hydroperoxide reductase
BSR56_06640	COG1643	Atp-dependent helicase
BSR56_06655	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BSR56_06680	COG2951	lytic endotransglycosylase activity
BSR56_06685	COG0772	Belongs to the SEDS family
BSR56_06700	COG0842	Transport permease protein
BSR56_06705	COG1131	(ABC) transporter
BSR56_06710	COG3676	manually curated
BSR56_06765	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BSR56_06795	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BSR56_06820	COG0729	surface antigen
BSR56_06860	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BSR56_06865	COG4605	iron ion homeostasis
BSR56_06870	COG4604	ABC transporter, ATP-binding protein
BSR56_06875	COG4607	ABC-type enterochelin transport system periplasmic component
BSR56_06880	COG2814	Major facilitator Superfamily
BSR56_06890	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BSR56_06895	COG0583	DNA-binding transcription factor activity
BSR56_06925	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_06940	COG1720	tRNA m6t6A37 methyltransferase activity
BSR56_06945	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BSR56_06955	COG0745	RESPONSE REGULATOR receiver
BSR56_06960	COG0642	Histidine kinase
BSR56_06970	COG0494	nUDIX hydrolase
BSR56_06980	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BSR56_06995	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BSR56_07000	COG3139	Protein of unknown function (DUF1315)
BSR56_07005	COG3501	Rhs element vgr protein
BSR56_07025	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BSR56_07030	COG1960	acyl-CoA dehydrogenase activity
BSR56_07050	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BSR56_07090	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_07110	COG3539	Fimbrial protein
BSR56_07135	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BSR56_07135	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BSR56_07155	COG1278	Cold shock
BSR56_07160	COG1278	Cold shock
BSR56_07170	COG3042	response to heat
BSR56_07220	COG0436	Aminotransferase
BSR56_07225	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BSR56_07230	COG0386	Belongs to the glutathione peroxidase family
BSR56_07240	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR56_07245	COG1522	sequence-specific DNA binding
BSR56_07255	COG0436	Aminotransferase
BSR56_07280	COG1253	flavin adenine dinucleotide binding
BSR56_07285	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BSR56_07295	COG0012	GTP binding
BSR56_07300	COG2011	ABC-type metal ion transport system permease component
BSR56_07305	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BSR56_07310	COG1464	Belongs to the NlpA lipoprotein family
BSR56_07340	COG2195	Cleaves the N-terminal amino acid of tripeptides
BSR56_07350	COG3550	peptidyl-serine autophosphorylation
BSR56_07390	COG2363	Small membrane protein
BSR56_07410	COG0513	Belongs to the DEAD box helicase family
BSR56_07420	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BSR56_07435	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BSR56_07445	COG1192	Involved in chromosome partitioning
BSR56_07450	COG1475	DNA binding
BSR56_07455	COG0811	peptide transport
BSR56_07465	COG1132	(ABC) transporter
BSR56_07470	COG1663	tetraacyldisaccharide 4'-kinase activity
BSR56_07500	COG0084	hydrolase, TatD family'
BSR56_07545	COG0590	tRNA wobble adenosine to inosine editing
BSR56_07565	COG0776	regulation of translation
BSR56_07580	COG2431	L-lysine efflux transmembrane transporter activity
BSR56_07585	COG1309	transcriptional regulator
BSR56_07590	COG2814	Major facilitator Superfamily
BSR56_07605	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BSR56_07610	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BSR56_07650	COG0024	Methionine aminopeptidase
BSR56_07655	COG0583	DNA-binding transcription factor activity
BSR56_07665	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BSR56_07670	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BSR56_07675	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BSR56_07675	COG0517	IMP dehydrogenase activity
BSR56_07700	COG0552	protein localization to endoplasmic reticulum
BSR56_07725	COG4890	Cyd operon protein YbgT
BSR56_07730	COG1294	oxidase, subunit
BSR56_07755	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BSR56_07775	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BSR56_07780	COG0569	domain protein
BSR56_07785	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BSR56_07790	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BSR56_07795	COG1451	nucleotide metabolic process
BSR56_07825	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BSR56_07835	COG0542	response to heat
BSR56_07845	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BSR56_07850	COG2267	carboxylic ester hydrolase activity
BSR56_07860	COG1902	pentaerythritol trinitrate reductase activity
BSR56_07860	COG0446	pyridine nucleotide-disulphide oxidoreductase
BSR56_07895	COG0148	phosphopyruvate hydratase activity
BSR56_07900	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BSR56_07955	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BSR56_07965	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BSR56_07980	COG1802	Transcriptional regulator
BSR56_07995	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BSR56_08025	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_08050	COG1944	ATP diphosphatase activity
BSR56_08075	COG0583	DNA-binding transcription factor activity
BSR56_08085	COG4774	siderophore transport
BSR56_08115	COG2249	NAD(P)H dehydrogenase (quinone) activity
BSR56_08125	COG3706	GGDEF domain
BSR56_08145	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BSR56_08165	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BSR56_08210	COG0537	adenosine 5'-monophosphoramidase activity
BSR56_08240	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BSR56_08260	COG0730	response to heat
BSR56_08265	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BSR56_08275	COG4771	TonB-dependent receptor
BSR56_08295	COG0406	alpha-ribazole phosphatase activity
BSR56_08315	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BSR56_08335	COG2814	Major facilitator Superfamily
BSR56_08380	COG1960	acyl-CoA dehydrogenase activity
BSR56_08385	COG1960	acyl-CoA dehydrogenase activity
BSR56_08390	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BSR56_08395	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BSR56_08400	COG2207	Transcriptional regulator
BSR56_08405	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BSR56_08445	COG0575	Belongs to the CDS family
BSR56_08450	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BSR56_08460	COG0528	UMP kinase activity
BSR56_08470	COG3852	Histidine kinase
BSR56_08475	COG2204	response regulator
BSR56_08480	COG1309	transcriptional regulator
BSR56_08520	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BSR56_08525	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
BSR56_08545	COG0697	spore germination
BSR56_08550	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BSR56_08560	COG0303	'Molybdopterin
BSR56_08565	COG0521	Mo-molybdopterin cofactor biosynthetic process
BSR56_08565	COG0315	cyclic pyranopterin monophosphate synthase activity
BSR56_08580	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BSR56_08585	COG0243	molybdopterin cofactor binding
BSR56_08590	COG3048	D-serine ammonia-lyase activity
BSR56_08600	COG0243	molybdopterin cofactor binding
BSR56_08605	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BSR56_08610	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BSR56_08610	COG2146	nitrite reductase [NAD(P)H] activity
BSR56_08615	COG2223	nitrite transmembrane transporter activity
BSR56_08625	COG1116	anion transmembrane transporter activity
BSR56_08625	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BSR56_08640	COG0439	Biotin carboxylase
BSR56_08655	COG2814	Major facilitator Superfamily
BSR56_08675	COG0069	glutamate synthase activity
BSR56_08695	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BSR56_08700	COG2963	transposase activity
BSR56_08710	COG4372	Transposase
BSR56_08715	COG3038	cytochrome b561
BSR56_08730	COG1454	alcohol dehydrogenase
BSR56_08735	COG0824	Thioesterase
BSR56_08745	COG2850	peptidyl-arginine hydroxylation
BSR56_08775	COG0640	Transcriptional regulator
BSR56_08795	COG3122	Protein conserved in bacteria
BSR56_08800	COG0668	transmembrane transport
BSR56_08820	COG1132	(ABC) transporter
BSR56_08840	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BSR56_08850	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BSR56_08850	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BSR56_08850	COG0506	proline dehydrogenase activity
BSR56_08860	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BSR56_08870	COG3698	Phosphodiester glycosidase
BSR56_08890	COG3153	acetyltransferase
BSR56_08895	COG2353	YceI-like domain
BSR56_08910	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BSR56_08915	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BSR56_08935	COG3634	alkyl hydroperoxide reductase activity
BSR56_08980	COG1286	toxin biosynthetic process
BSR56_09035	COG0424	maF-like protein
BSR56_09040	COG0583	DNA-binding transcription factor activity
BSR56_09115	COG0183	Belongs to the thiolase family
BSR56_09130	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BSR56_09135	COG0702	epimerase
BSR56_09140	COG0268	Binds directly to 16S ribosomal RNA
BSR56_09160	COG1218	3'(2'),5'-bisphosphate nucleotidase
BSR56_09165	COG1011	Hydrolase
BSR56_09170	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BSR56_09180	COG2137	regulation of response to DNA damage stimulus
BSR56_09205	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BSR56_09210	COG0776	regulation of translation
BSR56_09235	COG0822	iron-sulfur transferase activity
BSR56_09240	COG0316	Belongs to the HesB IscA family
BSR56_09270	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BSR56_09300	COG0583	DNA-binding transcription factor activity
BSR56_09315	COG3135	benzoate transporter
BSR56_09320	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BSR56_09320	COG0475	glutathione-regulated potassium exporter activity
BSR56_09330	COG1714	RDD family
BSR56_09340	COG1760	l-serine dehydratase
BSR56_09345	COG0308	aminopeptidase N
BSR56_09375	COG4133	protoheme IX ABC transporter activity
BSR56_09425	COG1765	OsmC-like protein
BSR56_09435	COG0501	Belongs to the peptidase M48B family
BSR56_09460	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BSR56_09465	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
BSR56_09470	COG1560	Kdo2-lipid A biosynthetic process
BSR56_09475	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
BSR56_09480	COG2072	flavoprotein involved in K transport
BSR56_09500	COG1309	transcriptional regulator
BSR56_09520	COG0642	Histidine kinase
BSR56_09525	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BSR56_09535	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BSR56_09565	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BSR56_09570	COG0243	molybdopterin cofactor binding
BSR56_09580	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BSR56_09585	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BSR56_09590	COG0010	Belongs to the arginase family
BSR56_09615	COG2188	Transcriptional regulator
BSR56_09625	COG0583	DNA-binding transcription factor activity
BSR56_09665	COG4266	Belongs to the allantoicase family
BSR56_09670	COG2186	Transcriptional regulator
BSR56_09675	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BSR56_09695	COG2233	PERMEase
BSR56_09700	COG2351	hydroxyisourate hydrolase activity
BSR56_09710	COG4993	Dehydrogenase
BSR56_09715	COG3659	wide pore channel activity
BSR56_09720	COG3420	alginic acid biosynthetic process
BSR56_09725	COG0710	3-dehydroquinate dehydratase activity
BSR56_09730	COG3485	protocatechuate 3,4-dioxygenase
BSR56_09735	COG3485	protocatechuate 3,4-dioxygenase
BSR56_09740	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BSR56_09750	COG0596	Alpha beta hydrolase
BSR56_09755	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BSR56_09760	COG0183	Belongs to the thiolase family
BSR56_09765	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BSR56_09770	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BSR56_09775	COG1414	Transcriptional regulator
BSR56_09790	COG1469	GTP cyclohydrolase I activity
BSR56_09795	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BSR56_09830	COG0446	pyridine nucleotide-disulphide oxidoreductase
BSR56_09830	COG1902	pentaerythritol trinitrate reductase activity
BSR56_09845	COG1741	Belongs to the pirin family
BSR56_09895	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_09940	COG0714	Associated with various cellular activities
BSR56_09945	COG2879	small protein
BSR56_09950	COG1966	Carbon starvation protein
BSR56_09955	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BSR56_09975	COG0254	rRNA binding
BSR56_09995	COG1067	ATP-dependent peptidase activity
BSR56_10000	COG0583	DNA-binding transcription factor activity
BSR56_10010	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BSR56_10035	COG3188	usher protein
BSR56_10090	COG1686	Belongs to the peptidase S11 family
BSR56_10095	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BSR56_10105	COG0482	sulfurtransferase activity
BSR56_10205	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BSR56_10210	COG1610	YqeY-like protein
BSR56_10230	COG4783	chaperone-mediated protein folding
BSR56_10235	COG0204	Acyl-transferase
BSR56_10270	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BSR56_10305	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BSR56_10350	COG1137	ATPase activity
BSR56_10355	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BSR56_10365	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BSR56_10370	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BSR56_10370	COG0517	IMP dehydrogenase activity
BSR56_10385	COG3015	lipoprotein NlpE involved in copper resistance
BSR56_10400	COG1253	flavin adenine dinucleotide binding
BSR56_10405	COG0222	ribosome binding
BSR56_10420	COG0175	sulfate reduction
BSR56_10430	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BSR56_10440	COG1773	rubredoxin
BSR56_10445	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BSR56_10450	COG0596	Alpha beta hydrolase
BSR56_10455	COG0583	DNA-binding transcription factor activity
BSR56_10460	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_10480	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BSR56_10485	COG1840	ABC-type Fe3 transport system, periplasmic component
BSR56_10530	COG0556	nucleotide-excision repair
BSR56_10575	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BSR56_10590	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BSR56_10595	COG0571	ribonuclease III activity
BSR56_10610	COG0481	GTPase activity
BSR56_10620	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BSR56_10675	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BSR56_10680	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BSR56_10685	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BSR56_10695	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BSR56_10700	COG4208	sulfate ABC transporter
BSR56_10705	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BSR56_10710	COG0583	DNA-binding transcription factor activity
BSR56_10725	COG0602	queuosine metabolic process
BSR56_10730	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BSR56_10745	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BSR56_10765	COG1942	4-Oxalocrotonate Tautomerase
BSR56_10770	COG0583	DNA-binding transcription factor activity
BSR56_10775	COG1056	cytidyltransferase-related domain
BSR56_10775	COG1051	belongs to the nudix hydrolase family
BSR56_10780	COG1024	Enoyl-CoA hydratase
BSR56_10785	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BSR56_10785	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BSR56_10790	COG3293	Transposase
BSR56_10800	COG1105	Belongs to the carbohydrate kinase PfkB family
BSR56_10805	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BSR56_10805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BSR56_10805	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
BSR56_10810	COG0778	Nitroreductase
BSR56_10815	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BSR56_10815	COG3323	Protein of unknown function (DUF1653)
BSR56_10825	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BSR56_10825	COG0047	phosphoribosylformylglycinamidine synthase activity
BSR56_10855	COG0824	Thioesterase
BSR56_10875	COG0823	Involved in the tonB-independent uptake of proteins
BSR56_10895	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BSR56_10945	COG0628	permease
BSR56_10955	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BSR56_10965	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BSR56_10965	COG0616	signal peptide processing
BSR56_10995	COG1136	(ABC) transporter
BSR56_11000	COG4591	ABC-type transport system involved in lipoprotein release permease component
BSR56_11015	COG1671	Belongs to the UPF0178 family
BSR56_11035	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR56_11075	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BSR56_11080	COG1280	lysine exporter protein (LysE YggA)
BSR56_11090	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BSR56_11095	COG0019	diaminopimelate decarboxylase activity
BSR56_11105	COG1115	amino acid carrier protein
BSR56_11120	COG0306	phosphate transporter
BSR56_11150	COG0242	peptide deformylase activity
BSR56_11165	COG0589	response to stress
BSR56_11190	COG2175	clavaminate synthase activity
BSR56_11195	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BSR56_11200	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BSR56_11205	COG4521	taurine ABC transporter
BSR56_11220	COG4149	molybdate abc transporter
BSR56_11225	COG0725	ABC transporter, periplasmic molybdate-binding protein
BSR56_11240	COG3293	Transposase
BSR56_11265	COG3293	Transposase
BSR56_11285	COG2885	chlorophyll binding
BSR56_11310	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_11315	COG0583	DNA-binding transcription factor activity
BSR56_11320	COG1301	dicarboxylic acid transport
BSR56_11335	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
BSR56_11350	COG0741	lytic transglycosylase activity
BSR56_11350	COG1196	nuclear chromosome segregation
BSR56_11350	COG0739	heme binding
BSR56_11355	COG0501	Belongs to the peptidase M48B family
BSR56_11365	COG2239	Acts as a magnesium transporter
BSR56_11370	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BSR56_11375	COG2194	sulfuric ester hydrolase activity
BSR56_11380	COG0584	glycerophosphoryl diester phosphodiesterase
BSR56_11405	COG2304	oxidoreductase activity
BSR56_11420	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BSR56_11445	COG0505	Belongs to the CarA family
BSR56_11465	COG0110	maltose O-acetyltransferase activity
BSR56_11490	COG2321	neutral zinc metallopeptidase
BSR56_11495	COG2354	Protein conserved in bacteria
BSR56_11505	COG1585	Membrane protein implicated in regulation of membrane protease activity
BSR56_11510	COG2268	Band 7 protein
BSR56_11525	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BSR56_11545	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BSR56_11550	COG1053	succinate dehydrogenase
BSR56_11555	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BSR56_11560	COG2009	succinate dehydrogenase
BSR56_11580	COG0586	Pfam SNARE associated Golgi protein
BSR56_11585	COG0500	methyltransferase
BSR56_11595	COG1280	lysine exporter protein (LysE YggA)
BSR56_11625	COG0321	lipoyl(octanoyl) transferase activity
BSR56_11640	COG0531	amino acid
BSR56_11650	COG1733	regulation of RNA biosynthetic process
BSR56_11660	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BSR56_11665	COG1648	precorrin-2 dehydrogenase activity
BSR56_11665	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BSR56_11680	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BSR56_11710	COG0671	phosphoesterase, PA-phosphatase related
BSR56_11715	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR56_11725	COG1538	Outer membrane efflux protein
BSR56_11730	COG0393	Putative heavy-metal-binding
BSR56_11745	COG1028	Short-chain dehydrogenase reductase Sdr
BSR56_11760	COG0525	valine-tRNA ligase activity
BSR56_11780	COG0004	ammonium transporteR
BSR56_11795	COG0642	Histidine kinase
BSR56_11800	COG0745	RESPONSE REGULATOR receiver
BSR56_11805	COG2194	sulfuric ester hydrolase activity
BSR56_11825	COG1752	Esterase of the alpha-beta hydrolase superfamily
BSR56_11840	COG0142	geranyltranstransferase activity
BSR56_11845	COG2828	Protein conserved in bacteria
BSR56_11850	COG1113	amino acid transport
BSR56_11875	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BSR56_11885	COG0671	phosphoesterase, PA-phosphatase related
BSR56_11895	COG0745	RESPONSE REGULATOR receiver
BSR56_11900	COG2205	protein histidine kinase activity
BSR56_11905	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
BSR56_11910	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BSR56_11915	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BSR56_11930	COG0560	Phosphoserine phosphatase
BSR56_11940	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BSR56_11945	COG1530	ribonuclease E activity
BSR56_11950	COG0424	maF-like protein
BSR56_11960	COG1792	Involved in formation and maintenance of cell shape
BSR56_11965	COG1077	Cell shape determining protein MreB Mrl
BSR56_11970	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BSR56_11980	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BSR56_12030	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
BSR56_12035	COG1752	Esterase of the alpha-beta hydrolase superfamily
BSR56_12040	COG1115	amino acid carrier protein
BSR56_12045	COG0786	glutamate:sodium symporter activity
BSR56_12060	COG2814	Major facilitator Superfamily
BSR56_12065	COG1289	transmembrane transporter activity
BSR56_12120	COG1376	ErfK ybiS ycfS ynhG family protein
BSR56_12125	COG2832	Protein of unknown function (DUF454)
BSR56_12135	COG5510	response to toxic substance
BSR56_12150	COG2198	Histidine kinase
BSR56_12150	COG0643	Histidine kinase
BSR56_12150	COG2198	Histidine kinase
BSR56_12150	COG0643	Histidine kinase
BSR56_12155	COG0840	transmembrane signaling receptor activity
BSR56_12185	COG3422	double-strand break repair
BSR56_12190	COG2824	Alkylphosphonate utilization operon protein PhnA
BSR56_12200	COG0354	folic acid binding
BSR56_12210	COG4772	TonB-dependent receptor
BSR56_12240	COG2233	PERMEase
BSR56_12250	COG0833	amino acid
BSR56_12255	COG1690	Belongs to the RtcB family
BSR56_12260	COG2885	chlorophyll binding
BSR56_12260	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BSR56_12270	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BSR56_12270	COG2885	chlorophyll binding
BSR56_12280	COG0183	Belongs to the thiolase family
BSR56_12295	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BSR56_12305	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_12320	COG0739	heme binding
BSR56_12350	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_12375	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BSR56_12385	COG1002	Type II restriction enzyme, methylase subunits
BSR56_12400	COG4584	PFAM Integrase catalytic
BSR56_12405	COG1484	DNA-dependent DNA replication
BSR56_12410	COG0739	heme binding
BSR56_12415	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_12425	COG3501	Rhs element vgr protein
BSR56_12440	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BSR56_12445	COG2207	Transcriptional regulator
BSR56_12455	COG0183	Belongs to the thiolase family
BSR56_12490	COG1272	protein, Hemolysin III
BSR56_12495	COG0477	Major facilitator Superfamily
BSR56_12515	COG0450	alkyl hydroperoxide reductase
BSR56_12530	COG0285	dihydrofolate synthase activity
BSR56_12600	COG3501	Rhs element vgr protein
BSR56_12615	COG0133	tryptophan synthase activity
BSR56_12625	COG4206	TonB-dependent receptor
BSR56_12630	COG2096	Adenosyltransferase
BSR56_12665	COG0745	RESPONSE REGULATOR receiver
BSR56_12670	COG2205	protein histidine kinase activity
BSR56_12680	COG1960	acyl-CoA dehydrogenase activity
BSR56_12685	COG1960	acyl-CoA dehydrogenase activity
BSR56_12725	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BSR56_12740	COG3306	glycosyltransferase involved in LPS biosynthesis
BSR56_12790	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BSR56_12800	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BSR56_12805	COG5002	protein histidine kinase activity
BSR56_12840	COG1862	Preprotein translocase
BSR56_12850	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BSR56_12885	COG1426	Protein conserved in bacteria
BSR56_12905	COG2975	iron-sulfur cluster assembly
BSR56_12920	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BSR56_12925	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BSR56_12930	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BSR56_12945	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BSR56_12950	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BSR56_12955	COG0625	glutathione transferase activity
BSR56_12960	COG2969	positive regulation of protein catabolic process
BSR56_13020	COG1960	acyl-CoA dehydrogenase activity
BSR56_13025	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BSR56_13035	COG4456	Virulence-associated protein
BSR56_13060	COG1309	transcriptional regulator
BSR56_13075	COG1960	acyl-CoA dehydrogenase activity
BSR56_13115	COG1183	phosphatidylcholine synthase activity
BSR56_13120	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BSR56_13150	COG0739	heme binding
BSR56_13150	COG1196	nuclear chromosome segregation
BSR56_13150	COG0741	lytic transglycosylase activity
BSR56_13160	COG1702	phosphate starvation-inducible protein PhoH
BSR56_13255	COG0788	formyltetrahydrofolate deformylase activity
BSR56_13270	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BSR56_13275	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BSR56_13280	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BSR56_13280	COG4651	solute:proton antiporter activity
BSR56_13300	COG0210	DNA helicase
BSR56_13325	COG1733	regulation of RNA biosynthetic process
BSR56_13350	COG1560	Kdo2-lipid A biosynthetic process
BSR56_13400	COG0473	3-isopropylmalate dehydrogenase activity
BSR56_13435	COG0494	nUDIX hydrolase
BSR56_13450	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BSR56_13455	COG3011	Protein conserved in bacteria
BSR56_13470	COG0625	glutathione transferase activity
BSR56_13485	COG0564	pseudouridine synthase activity
BSR56_13495	COG1530	ribonuclease E activity
BSR56_13515	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BSR56_13525	COG0534	Mate efflux family protein
BSR56_13530	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BSR56_13550	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR56_13575	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BSR56_13615	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_13640	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BSR56_13655	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BSR56_13665	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
BSR56_13665	COG0644	oxidoreductase
BSR56_13670	COG0425	Belongs to the sulfur carrier protein TusA family
BSR56_13675	COG4535	Mg2 and Co2 transporter CorC
BSR56_13680	COG0815	Transfers the fatty acyl group on membrane lipoproteins
BSR56_13700	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BSR56_13710	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BSR56_13725	COG0789	Transcriptional regulator
BSR56_13730	COG0598	Magnesium transport protein CorA
BSR56_13735	COG1185	polyribonucleotide nucleotidyltransferase activity
BSR56_13740	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BSR56_13750	COG3676	manually curated
BSR56_13755	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BSR56_13760	COG1074	ATP-dependent DNA helicase activity
BSR56_13765	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BSR56_13790	COG2226	methyltransferase
BSR56_13805	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BSR56_13815	COG1116	anion transmembrane transporter activity
BSR56_13820	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BSR56_13830	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BSR56_13845	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BSR56_13845	COG2111	Na H antiporter
BSR56_13850	COG1006	Multisubunit Na H antiporter MnhC subunit
BSR56_13855	COG0651	ATP synthesis coupled electron transport
BSR56_13865	COG2212	antiporter activity
BSR56_13910	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_13945	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BSR56_13955	COG0195	Participates in both transcription termination and antitermination
BSR56_14005	COG0237	dephospho-CoA kinase activity
BSR56_14020	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BSR56_14030	COG0497	DNA recombination
BSR56_14040	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BSR56_14065	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BSR56_14110	COG0326	Molecular chaperone. Has ATPase activity
BSR56_14120	COG2056	Na+-H+ antiporter family
BSR56_14170	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BSR56_14180	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BSR56_14190	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BSR56_14220	COG0546	phosphoglycolate phosphatase activity
BSR56_14225	COG1716	ATPase activity
BSR56_14270	COG0181	hydroxymethylbilane synthase activity
BSR56_14280	COG3275	phosphorelay sensor kinase activity
BSR56_14305	COG0494	nUDIX hydrolase
BSR56_14315	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BSR56_14320	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BSR56_14325	COG0772	Belongs to the SEDS family
BSR56_14350	COG4974	Belongs to the 'phage' integrase family
BSR56_14355	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BSR56_14365	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BSR56_14370	COG1686	Belongs to the peptidase S11 family
BSR56_14375	COG2197	response regulator
BSR56_14390	COG0793	Belongs to the peptidase S41A family
BSR56_14395	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BSR56_14400	COG0795	lipopolysaccharide-transporting ATPase activity
BSR56_14405	COG0795	lipopolysaccharide-transporting ATPase activity
BSR56_14445	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BSR56_14445	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BSR56_14450	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BSR56_14455	COG0004	ammonium transporteR
BSR56_14460	COG0347	Belongs to the P(II) protein family
BSR56_14545	COG1538	Outer membrane efflux protein
BSR56_14555	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BSR56_14560	COG1230	cation diffusion facilitator family transporter
BSR56_14570	COG0640	Transcriptional regulator
BSR56_14580	COG0789	Transcriptional regulator
BSR56_14610	COG2814	Major facilitator Superfamily
BSR56_14650	COG0633	Ferredoxin
BSR56_14715	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BSR56_14730	COG0318	PFAM AMP-dependent synthetase and ligase
BSR56_14740	COG2860	membrane
BSR56_14750	COG1253	flavin adenine dinucleotide binding
BSR56_14775	COG2814	Major facilitator Superfamily
BSR56_14785	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BSR56_14820	COG2814	Major facilitator Superfamily
BSR56_14830	COG2814	Major facilitator Superfamily
BSR56_14840	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BSR56_14850	COG1283	sodium-dependent phosphate transmembrane transporter activity
BSR56_14885	COG2826	transposase and inactivated derivatives, IS30 family
BSR56_14905	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BSR56_14910	COG3162	membrane
BSR56_14915	COG2205	protein histidine kinase activity
BSR56_14940	COG1652	LysM domain
BSR56_14945	COG0758	DNA mediated transformation
BSR56_14960	COG1309	transcriptional regulator
BSR56_14965	COG2814	Major facilitator Superfamily
BSR56_14975	COG0386	Belongs to the glutathione peroxidase family
BSR56_15000	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BSR56_15010	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BSR56_15050	COG1121	(ABC) transporter
BSR56_15055	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BSR56_15060	COG1280	lysine exporter protein (LysE YggA)
BSR56_15065	COG2837	iron assimilation
BSR56_15100	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BSR56_15105	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BSR56_15130	COG0519	Catalyzes the synthesis of GMP from XMP
BSR56_15130	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BSR56_15140	COG4399	Belongs to the UPF0754 family
BSR56_15150	COG2259	Doxx family
BSR56_15155	COG0586	Pfam SNARE associated Golgi protein
BSR56_15170	COG1192	Involved in chromosome partitioning
BSR56_15180	COG0271	Belongs to the BolA IbaG family
BSR56_15215	COG3756	Protein conserved in bacteria
BSR56_15265	COG0735	belongs to the Fur family
BSR56_15345	COG3550	peptidyl-serine autophosphorylation
BSR56_15350	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BSR56_15395	COG4372	Transposase
BSR56_15450	COG0477	Major facilitator Superfamily
BSR56_15455	COG1024	Enoyl-CoA hydratase
BSR56_15460	COG1024	Enoyl-CoA hydratase
BSR56_15465	COG1960	acyl-CoA dehydrogenase activity
BSR56_15470	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BSR56_15490	COG1113	amino acid transport
BSR56_15495	COG0251	oxidation-reduction process
BSR56_15510	COG1522	sequence-specific DNA binding
BSR56_15520	COG0456	acetyltransferase
BSR56_15530	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BSR56_15555	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BSR56_15570	COG1802	Transcriptional regulator
BSR56_15575	COG1448	Aminotransferase
BSR56_15580	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BSR56_15585	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BSR56_15600	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BSR56_15610	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BSR56_15620	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BSR56_15665	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BSR56_15715	COG3023	N-Acetylmuramoyl-L-alanine amidase
BSR56_15765	COG0546	phosphoglycolate phosphatase activity
BSR56_15770	COG1028	Short-chain dehydrogenase reductase Sdr
BSR56_15780	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BSR56_15780	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BSR56_15785	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BSR56_15790	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BSR56_15795	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BSR56_15800	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BSR56_15805	COG1116	anion transmembrane transporter activity
BSR56_15810	COG1309	transcriptional regulator
BSR56_15835	COG0196	riboflavin kinase activity
BSR56_15840	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BSR56_15850	COG1047	Peptidyl-prolyl cis-trans
BSR56_15895	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BSR56_15910	COG3293	Transposase
BSR56_15925	COG0583	DNA-binding transcription factor activity
BSR56_15935	COG0443	Heat shock 70 kDa protein
BSR56_15940	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
BSR56_15970	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BSR56_15990	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BSR56_16010	COG1960	acyl-CoA dehydrogenase activity
BSR56_16020	COG0861	Integral membrane protein TerC family
BSR56_16025	COG0402	S-adenosylhomocysteine deaminase activity
BSR56_16040	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BSR56_16050	COG0706	membrane insertase activity
BSR56_16065	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BSR56_16095	COG2963	transposase activity
BSR56_16105	COG4372	Transposase
BSR56_16140	COG1192	Involved in chromosome partitioning
BSR56_16145	COG1475	DNA binding
BSR56_16165	COG1373	ATPase (AAA superfamily