locus-tag class description LIS44_00005 PF00308 Bacterial dnaA protein LIS44_00005 PF08299 Bacterial dnaA protein helix-turn-helix LIS44_00005 PF11638 DnaA N-terminal domain LIS44_00015 PF02463 RecF/RecN/SMC N terminal domain LIS44_00020 PF00204 DNA gyrase B LIS44_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LIS44_00020 PF18053 DNA gyrase B subunit insert domain LIS44_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_00020 PF01751 Toprim domain LIS44_00035 PF00156 Phosphoribosyl transferase domain LIS44_00040 PF01979 Amidohydrolase family LIS44_00055 PF00107 Zinc-binding dehydrogenase LIS44_00055 PF08240 Alcohol dehydrogenase GroES-like domain LIS44_00060 PF01225 Mur ligase family, catalytic domain LIS44_00060 PF02875 Mur ligase family, glutamate ligase domain LIS44_00060 PF08245 Mur ligase middle domain LIS44_00070 PF00731 AIR carboxylase LIS44_00080 PF13406 Transglycosylase SLT domain LIS44_00085 PF03702 Anhydro-N-acetylmuramic acid kinase LIS44_00090 PF00579 tRNA synthetases class I (W and Y) LIS44_00130 PF07690 Major Facilitator Superfamily LIS44_00150 PF12796 Ankyrin repeats (3 copies) LIS44_00155 PF03050 Transposase IS66 family LIS44_00155 PF13005 zinc-finger binding domain of transposase IS66 LIS44_00155 PF13007 Transposase C of IS166 homeodomain LIS44_00155 PF13817 IS66 C-terminal element LIS44_00170 PF07995 Glucose / Sorbosone dehydrogenase LIS44_00180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIS44_00185 PF01252 Signal peptidase (SPase) II LIS44_00190 PF06827 Zinc finger found in FPG and IleRS LIS44_00190 PF00133 tRNA synthetases class I (I, L, M and V) LIS44_00190 PF08264 Anticodon-binding domain of tRNA LIS44_00195 PF01687 Riboflavin kinase LIS44_00195 PF06574 FAD synthetase LIS44_00205 PF00440 Bacterial regulatory proteins, tetR family LIS44_00205 PF08362 YcdC-like protein, C-terminal region LIS44_00215 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_00220 PF00296 Luciferase-like monooxygenase LIS44_00225 PF09084 NMT1/THI5 like LIS44_00235 PF00583 Acetyltransferase (GNAT) family LIS44_00235 PF00696 Amino acid kinase family LIS44_00255 PF00106 short chain dehydrogenase LIS44_00260 PF13419 Haloacid dehalogenase-like hydrolase LIS44_00270 PF01323 DSBA-like thioredoxin domain LIS44_00275 PF00440 Bacterial regulatory proteins, tetR family LIS44_00280 PF00175 Oxidoreductase NAD-binding domain LIS44_00280 PF00111 2Fe-2S iron-sulfur cluster binding domain LIS44_00280 PF00970 Oxidoreductase FAD-binding domain LIS44_00285 PF00487 Fatty acid desaturase LIS44_00290 PF03725 3' exoribonuclease family, domain 2 LIS44_00290 PF01138 3' exoribonuclease family, domain 1 LIS44_00295 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LIS44_00295 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LIS44_00305 PF03023 Lipid II flippase MurJ LIS44_00325 PF07043 Protein of unknown function (DUF1328) LIS44_00330 PF03692 Putative zinc- or iron-chelating domain LIS44_00335 PF12002 MgsA AAA+ ATPase C terminal LIS44_00335 PF16193 AAA C-terminal domain LIS44_00335 PF00004 ATPase family associated with various cellular activities (AAA) LIS44_00340 PF01259 SAICAR synthetase LIS44_00350 PF00701 Dihydrodipicolinate synthetase family LIS44_00355 PF07690 Major Facilitator Superfamily LIS44_00360 PF00857 Isochorismatase family LIS44_00365 PF01758 Sodium Bile acid symporter family LIS44_00395 PF02580 D-Tyr-tRNA(Tyr) deacylase LIS44_00400 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LIS44_00400 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LIS44_00405 PF00581 Rhodanese-like domain LIS44_00410 PF02666 Phosphatidylserine decarboxylase LIS44_00420 PF03485 Arginyl tRNA synthetase N terminal domain LIS44_00420 PF05746 DALR anticodon binding domain LIS44_00420 PF00750 tRNA synthetases class I (R) LIS44_00425 PF04286 Protein of unknown function (DUF445) LIS44_00440 PF04262 Glutamate-cysteine ligase LIS44_00445 PF02600 Disulfide bond formation protein DsbB LIS44_00455 PF05728 Uncharacterised protein family (UPF0227) LIS44_00460 PF01751 Toprim domain LIS44_00460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_00460 PF00986 DNA gyrase B subunit, carboxyl terminus LIS44_00460 PF00204 DNA gyrase B LIS44_00465 PF00583 Acetyltransferase (GNAT) family LIS44_00470 PF03502 Nucleoside-specific channel-forming protein, Tsx LIS44_00490 PF11412 Disulphide bond corrector protein DsbC LIS44_00490 PF02683 Cytochrome C biogenesis protein transmembrane region LIS44_00495 PF02798 Glutathione S-transferase, N-terminal domain LIS44_00495 PF14497 Glutathione S-transferase, C-terminal domain LIS44_00500 PF00990 Diguanylate cyclase, GGDEF domain LIS44_00500 PF08448 PAS fold LIS44_00505 PF02525 Flavodoxin-like fold LIS44_00510 PF07859 alpha/beta hydrolase fold LIS44_00520 PF03960 ArsC family LIS44_00530 PF03372 Endonuclease/Exonuclease/phosphatase family LIS44_00535 PF00156 Phosphoribosyl transferase domain LIS44_00555 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LIS44_00555 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LIS44_00560 PF04101 Glycosyltransferase family 28 C-terminal domain LIS44_00560 PF03033 Glycosyltransferase family 28 N-terminal domain LIS44_00565 PF01225 Mur ligase family, catalytic domain LIS44_00565 PF02875 Mur ligase family, glutamate ligase domain LIS44_00565 PF08245 Mur ligase middle domain LIS44_00570 PF01820 D-ala D-ala ligase N-terminus LIS44_00570 PF07478 D-ala D-ala ligase C-terminus LIS44_00575 PF03799 Cell division protein FtsQ LIS44_00575 PF08478 POTRA domain, FtsQ-type LIS44_00580 PF02491 SHS2 domain inserted in FTSA LIS44_00585 PF12327 FtsZ family, C-terminal domain LIS44_00585 PF00091 Tubulin/FtsZ family, GTPase domain LIS44_00590 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LIS44_00615 PF01169 Uncharacterized protein family UPF0016 LIS44_00620 PF01613 Flavin reductase like domain LIS44_00620 PF00258 Flavodoxin LIS44_00625 PF03692 Putative zinc- or iron-chelating domain LIS44_00630 PF00478 IMP dehydrogenase / GMP reductase domain LIS44_00630 PF00571 CBS domain LIS44_00635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIS44_00635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIS44_00635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIS44_00635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIS44_00640 PF01243 Pyridoxamine 5'-phosphate oxidase LIS44_00640 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LIS44_00645 PF17768 RecJ OB domain LIS44_00645 PF02272 DHHA1 domain LIS44_00645 PF01368 DHH family LIS44_00670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIS44_00675 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LIS44_00680 PF04452 RNA methyltransferase LIS44_00685 PF00924 Mechanosensitive ion channel LIS44_00695 PF00501 AMP-binding enzyme LIS44_00695 PF13193 AMP-binding enzyme C-terminal domain LIS44_00695 PF16177 Acetyl-coenzyme A synthetase N-terminus LIS44_00700 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LIS44_00700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_00710 PF07995 Glucose / Sorbosone dehydrogenase LIS44_00715 PF00296 Luciferase-like monooxygenase LIS44_00720 PF03358 NADPH-dependent FMN reductase LIS44_00725 PF00196 Bacterial regulatory proteins, luxR family LIS44_00725 PF00072 Response regulator receiver domain LIS44_00740 PF04341 Protein of unknown function, DUF485 LIS44_00745 PF00474 Sodium:solute symporter family LIS44_00765 PF00072 Response regulator receiver domain LIS44_00765 PF00990 Diguanylate cyclase, GGDEF domain LIS44_00790 PF02581 Thiamine monophosphate synthase LIS44_00790 PF03070 TENA/THI-4/PQQC family LIS44_00790 PF08543 Phosphomethylpyrimidine kinase LIS44_00800 PF07690 Major Facilitator Superfamily LIS44_00805 PF00436 Single-strand binding protein family LIS44_00810 PF00578 AhpC/TSA family LIS44_00810 PF10417 C-terminal domain of 1-Cys peroxiredoxin LIS44_00815 PF02678 Pirin LIS44_00815 PF05726 Pirin C-terminal cupin domain LIS44_00820 PF01593 Flavin containing amine oxidoreductase LIS44_00855 PF01348 Type II intron maturase LIS44_00855 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LIS44_00865 PF13817 IS66 C-terminal element LIS44_00865 PF03050 Transposase IS66 family LIS44_00865 PF13007 Transposase C of IS166 homeodomain LIS44_00865 PF13005 zinc-finger binding domain of transposase IS66 LIS44_00895 PF02661 Fic/DOC family LIS44_00895 PF13784 Fic/DOC family N-terminal LIS44_00900 PF00589 Phage integrase family LIS44_00900 PF13356 Arm DNA-binding domain LIS44_00995 PF03796 DnaB-like helicase C terminal domain LIS44_00995 PF00772 DnaB-like helicase N terminal domain LIS44_01020 PF10549 ORF11CD3 domain LIS44_01020 PF09669 Phage regulatory protein Rha (Phage_pRha) LIS44_01035 PF00589 Phage integrase family LIS44_01035 PF14659 Phage integrase, N-terminal SAM-like domain LIS44_01035 PF13356 Arm DNA-binding domain LIS44_01045 PF02705 K+ potassium transporter LIS44_01065 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LIS44_01065 PF12833 Helix-turn-helix domain LIS44_01080 PF00977 Histidine biosynthesis protein LIS44_01085 PF01636 Phosphotransferase enzyme family LIS44_01090 PF00313 'Cold-shock' DNA-binding domain LIS44_01105 PF00324 Amino acid permease LIS44_01110 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LIS44_01110 PF01266 FAD dependent oxidoreductase LIS44_01120 PF00977 Histidine biosynthesis protein LIS44_01130 PF00117 Glutamine amidotransferase class-I LIS44_01135 PF00475 Imidazoleglycerol-phosphate dehydratase LIS44_01180 PF03848 Tellurite resistance protein TehB LIS44_01180 PF09313 Domain of unknown function (DUF1971) LIS44_01190 PF00108 Thiolase, N-terminal domain LIS44_01190 PF02803 Thiolase, C-terminal domain LIS44_01195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIS44_01195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIS44_01195 PF00378 Enoyl-CoA hydratase/isomerase LIS44_01200 PF07724 AAA domain (Cdc48 subfamily) LIS44_01200 PF10431 C-terminal, D2-small domain, of ClpB protein LIS44_01205 PF08459 UvrC Helix-hairpin-helix N-terminal LIS44_01205 PF01541 GIY-YIG catalytic domain LIS44_01205 PF02151 UvrB/uvrC motif LIS44_01215 PF01066 CDP-alcohol phosphatidyltransferase LIS44_01220 PF04362 Bacterial Fe(2+) trafficking LIS44_01225 PF14698 Argininosuccinate lyase C-terminal LIS44_01225 PF00206 Lyase LIS44_01230 PF07694 5TMR of 5TMR-LYT LIS44_01230 PF06580 Histidine kinase LIS44_01230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_01235 PF04397 LytTr DNA-binding domain LIS44_01235 PF00072 Response regulator receiver domain LIS44_01240 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LIS44_01240 PF03900 Porphobilinogen deaminase, C-terminal domain LIS44_01245 PF02602 Uroporphyrinogen-III synthase HemD LIS44_01265 PF00816 H-NS histone family LIS44_01280 PF00263 Bacterial type II and III secretion system protein LIS44_01280 PF03958 Bacterial type II/III secretion system short domain LIS44_01285 PF00498 FHA domain LIS44_01285 PF12401 Protein of unknown function (DUF2662) LIS44_01290 PF13419 Haloacid dehalogenase-like hydrolase LIS44_01295 PF04715 Anthranilate synthase component I, N terminal region LIS44_01295 PF00425 chorismate binding enzyme LIS44_01320 PF03144 Elongation factor Tu domain 2 LIS44_01320 PF03143 Elongation factor Tu C-terminal domain LIS44_01320 PF00009 Elongation factor Tu GTP binding domain LIS44_01330 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LIS44_01335 PF00467 KOW motif LIS44_01335 PF02357 Transcription termination factor nusG LIS44_01340 PF00298 Ribosomal protein L11, RNA binding domain LIS44_01340 PF03946 Ribosomal protein L11, N-terminal domain LIS44_01345 PF00687 Ribosomal protein L1p/L10e family LIS44_01350 PF00466 Ribosomal protein L10 LIS44_01355 PF16320 Ribosomal protein L7/L12 dimerisation domain LIS44_01355 PF00542 Ribosomal protein L7/L12 C-terminal domain LIS44_01360 PF04563 RNA polymerase beta subunit LIS44_01360 PF04561 RNA polymerase Rpb2, domain 2 LIS44_01360 PF04565 RNA polymerase Rpb2, domain 3 LIS44_01360 PF10385 RNA polymerase beta subunit external 1 domain LIS44_01360 PF00562 RNA polymerase Rpb2, domain 6 LIS44_01360 PF04560 RNA polymerase Rpb2, domain 7 LIS44_01365 PF04998 RNA polymerase Rpb1, domain 5 LIS44_01365 PF04997 RNA polymerase Rpb1, domain 1 LIS44_01365 PF00623 RNA polymerase Rpb1, domain 2 LIS44_01365 PF04983 RNA polymerase Rpb1, domain 3 LIS44_01365 PF05000 RNA polymerase Rpb1, domain 4 LIS44_01390 PF03553 Na+/H+ antiporter family LIS44_01390 PF13726 Na+-H+ antiporter family LIS44_01405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_01405 PF00183 Hsp90 protein LIS44_01440 PF01323 DSBA-like thioredoxin domain LIS44_01455 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LIS44_01455 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LIS44_01460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_01460 PF00512 His Kinase A (phospho-acceptor) domain LIS44_01460 PF00672 HAMP domain LIS44_01465 PF00072 Response regulator receiver domain LIS44_01465 PF00486 Transcriptional regulatory protein, C terminal LIS44_01470 PF09371 Tex-like protein N-terminal domain LIS44_01470 PF16921 Tex protein YqgF-like domain LIS44_01470 PF17674 HHH domain LIS44_01470 PF00575 S1 RNA binding domain LIS44_01490 PF00665 Integrase core domain LIS44_01490 PF13333 Integrase core domain LIS44_01490 PF13276 HTH-like domain LIS44_01500 PF00106 short chain dehydrogenase LIS44_01505 PF01053 Cys/Met metabolism PLP-dependent enzyme LIS44_01510 PF00005 ABC transporter LIS44_01510 PF12848 ABC transporter LIS44_01520 PF01545 Cation efflux family LIS44_01540 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIS44_01550 PF07282 Putative transposase DNA-binding domain LIS44_01550 PF12323 Helix-turn-helix domain LIS44_01550 PF01385 Probable transposase LIS44_01575 PF03717 Penicillin-binding Protein dimerisation domain LIS44_01575 PF00905 Penicillin binding protein transpeptidase domain LIS44_01580 PF01225 Mur ligase family, catalytic domain LIS44_01580 PF02875 Mur ligase family, glutamate ligase domain LIS44_01580 PF08245 Mur ligase middle domain LIS44_01585 PF01225 Mur ligase family, catalytic domain LIS44_01585 PF02875 Mur ligase family, glutamate ligase domain LIS44_01585 PF08245 Mur ligase middle domain LIS44_01590 PF00953 Glycosyl transferase family 4 LIS44_01595 PF13847 Methyltransferase domain LIS44_01600 PF07282 Putative transposase DNA-binding domain LIS44_01600 PF01385 Probable transposase LIS44_01600 PF12323 Helix-turn-helix domain LIS44_01605 PF17092 Penicillin-binding protein OB-like domain LIS44_01605 PF00912 Transglycosylase LIS44_01605 PF00905 Penicillin binding protein transpeptidase domain LIS44_01610 PF11104 Type IV pilus assembly protein PilM; LIS44_01615 PF05137 Fimbrial assembly protein (PilN) LIS44_01620 PF04350 Pilus assembly protein, PilO LIS44_01630 PF00263 Bacterial type II and III secretion system protein LIS44_01630 PF03958 Bacterial type II/III secretion system short domain LIS44_01630 PF07660 Secretin and TonB N terminus short domain LIS44_01630 PF11741 AMIN domain LIS44_01635 PF01202 Shikimate kinase LIS44_01640 PF01761 3-dehydroquinate synthase LIS44_01655 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_01655 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LIS44_01665 PF04011 LemA family LIS44_01670 PF04536 TPM domain LIS44_01775 PF07963 Prokaryotic N-terminal methylation motif LIS44_01775 PF00114 Pilin (bacterial filament) LIS44_01780 PF15864 Protein glycosylation ligase LIS44_01780 PF04932 O-Antigen ligase LIS44_01780 PF11846 Virulence factor membrane-bound polymerase, C-terminal LIS44_01785 PF07963 Prokaryotic N-terminal methylation motif LIS44_01785 PF00114 Pilin (bacterial filament) LIS44_01795 PF04932 O-Antigen ligase LIS44_01795 PF11846 Virulence factor membrane-bound polymerase, C-terminal LIS44_01795 PF15864 Protein glycosylation ligase LIS44_01800 PF00210 Ferritin-like domain LIS44_01805 PF04324 BFD-like [2Fe-2S] binding domain LIS44_01810 PF01042 Endoribonuclease L-PSP LIS44_01815 PF04607 Region found in RelA / SpoT proteins LIS44_01815 PF13291 ACT domain LIS44_01815 PF02824 TGS domain LIS44_01820 PF01192 RNA polymerase Rpb6 LIS44_01825 PF00625 Guanylate kinase LIS44_01830 PF02401 LytB protein LIS44_01835 PF07963 Prokaryotic N-terminal methylation motif LIS44_01835 PF00114 Pilin (bacterial filament) LIS44_01860 PF00114 Pilin (bacterial filament) LIS44_01860 PF07963 Prokaryotic N-terminal methylation motif LIS44_01865 PF07963 Prokaryotic N-terminal methylation motif LIS44_01865 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LIS44_01870 PF00886 Ribosomal protein S16 LIS44_01875 PF05239 PRC-barrel domain LIS44_01875 PF01782 RimM N-terminal domain LIS44_01880 PF01746 tRNA (Guanine-1)-methyltransferase LIS44_01885 PF01245 Ribosomal protein L19 LIS44_01890 PF00561 alpha/beta hydrolase fold LIS44_01895 PF00561 alpha/beta hydrolase fold LIS44_01900 PF03280 Proteobacterial lipase chaperone protein LIS44_01905 PF09157 Pseudouridine synthase II TruB, C-terminal LIS44_01905 PF16198 tRNA pseudouridylate synthase B C-terminal domain LIS44_01905 PF01509 TruB family pseudouridylate synthase (N terminal domain) LIS44_01910 PF01925 Sulfite exporter TauE/SafE LIS44_01920 PF00892 EamA-like transporter family LIS44_01925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIS44_01925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIS44_01930 PF01565 FAD binding domain LIS44_01930 PF02913 FAD linked oxidases, C-terminal domain LIS44_01950 PF07690 Major Facilitator Superfamily LIS44_01955 PF12823 Domain of unknown function (DUF3817) LIS44_01965 PF01594 AI-2E family transporter LIS44_01970 PF13614 AAA domain LIS44_01980 PF01209 ubiE/COQ5 methyltransferase family LIS44_02005 PF01197 Ribosomal protein L31 LIS44_02010 PF03109 ABC1 family LIS44_02015 PF01554 MatE LIS44_02025 PF04055 Radical SAM superfamily LIS44_02025 PF06969 HemN C-terminal domain LIS44_02040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_02040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_02040 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_02040 PF12806 Acetyl-CoA dehydrogenase C-terminal like LIS44_02045 PF01488 Shikimate / quinate 5-dehydrogenase LIS44_02045 PF08501 Shikimate dehydrogenase substrate binding domain LIS44_02045 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LIS44_02055 PF01218 Coproporphyrinogen III oxidase LIS44_02060 PF06969 HemN C-terminal domain LIS44_02060 PF04055 Radical SAM superfamily LIS44_02070 PF02779 Transketolase, pyrimidine binding domain LIS44_02070 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LIS44_02070 PF02780 Transketolase, C-terminal domain LIS44_02075 PF00459 Inositol monophosphatase family LIS44_02080 PF00270 DEAD/DEAH box helicase LIS44_02080 PF00271 Helicase conserved C-terminal domain LIS44_02085 PF00005 ABC transporter LIS44_02090 PF02405 Permease MlaE LIS44_02095 PF02470 MlaD protein LIS44_02110 PF01544 CorA-like Mg2+ transporter protein LIS44_02115 PF03641 Possible lysine decarboxylase LIS44_02125 PF00156 Phosphoribosyl transferase domain LIS44_02140 PF01553 Acyltransferase LIS44_02160 PF01926 50S ribosome-binding GTPase LIS44_02165 PF02082 Transcriptional regulator LIS44_02170 PF00970 Oxidoreductase FAD-binding domain LIS44_02170 PF00042 Globin LIS44_02170 PF00175 Oxidoreductase NAD-binding domain LIS44_02175 PF01053 Cys/Met metabolism PLP-dependent enzyme LIS44_02180 PF00117 Glutamine amidotransferase class-I LIS44_02190 PF00297 Ribosomal protein L3 LIS44_02195 PF00573 Ribosomal protein L4/L1 family LIS44_02200 PF00276 Ribosomal protein L23 LIS44_02205 PF00181 Ribosomal Proteins L2, RNA binding domain LIS44_02205 PF03947 Ribosomal Proteins L2, C-terminal domain LIS44_02210 PF00203 Ribosomal protein S19 LIS44_02215 PF00237 Ribosomal protein L22p/L17e LIS44_02225 PF00252 Ribosomal protein L16p/L10e LIS44_02230 PF00831 Ribosomal L29 protein LIS44_02235 PF00366 Ribosomal protein S17 LIS44_02240 PF00238 Ribosomal protein L14p/L23e LIS44_02245 PF00467 KOW motif LIS44_02245 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LIS44_02250 PF00281 Ribosomal protein L5 LIS44_02250 PF00673 ribosomal L5P family C-terminus LIS44_02255 PF00253 Ribosomal protein S14p/S29e LIS44_02260 PF00410 Ribosomal protein S8 LIS44_02265 PF00347 Ribosomal protein L6 LIS44_02270 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LIS44_02275 PF00333 Ribosomal protein S5, N-terminal domain LIS44_02275 PF03719 Ribosomal protein S5, C-terminal domain LIS44_02280 PF00327 Ribosomal protein L30p/L7e LIS44_02285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LIS44_02290 PF00344 SecY translocase LIS44_02295 PF00444 Ribosomal protein L36 LIS44_02300 PF00416 Ribosomal protein S13/S18 LIS44_02310 PF00163 Ribosomal protein S4/S9 N-terminal domain LIS44_02310 PF01479 S4 domain LIS44_02315 PF01000 RNA polymerase Rpb3/RpoA insert domain LIS44_02315 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LIS44_02315 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LIS44_02320 PF01196 Ribosomal protein L17 LIS44_02325 PF00743 Flavin-binding monooxygenase-like LIS44_02330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_02330 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_02330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_02335 PF03937 Flavinator of succinate dehydrogenase LIS44_02365 PF00892 EamA-like transporter family LIS44_02375 PF09526 Probable metal-binding protein (DUF2387) LIS44_02380 PF01432 Peptidase family M3 LIS44_02385 PF01609 Transposase DDE domain LIS44_02385 PF13006 Insertion element 4 transposase N-terminal LIS44_02390 PF00773 RNB domain LIS44_02390 PF17876 Cold shock domain LIS44_02390 PF00575 S1 RNA binding domain LIS44_02390 PF08461 Ribonuclease R winged-helix domain LIS44_02390 PF08206 Ribonuclease B OB domain LIS44_02425 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIS44_02430 PF13006 Insertion element 4 transposase N-terminal LIS44_02430 PF01609 Transposase DDE domain LIS44_02435 PF03631 Virulence factor BrkB LIS44_02440 PF03358 NADPH-dependent FMN reductase LIS44_02490 PF02130 Uncharacterized protein family UPF0054 LIS44_02495 PF02562 PhoH-like protein LIS44_02500 PF00919 Uncharacterized protein family UPF0004 LIS44_02500 PF04055 Radical SAM superfamily LIS44_02500 PF01938 TRAM domain LIS44_02505 PF01551 Peptidase family M23 LIS44_02505 PF10145 Phage-related minor tail protein LIS44_02505 PF01464 Transglycosylase SLT domain LIS44_02515 PF00056 lactate/malate dehydrogenase, NAD binding domain LIS44_02515 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LIS44_02540 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LIS44_02545 PF01066 CDP-alcohol phosphatidyltransferase LIS44_02600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIS44_02600 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_02610 PF00753 Metallo-beta-lactamase superfamily LIS44_02610 PF04273 Putative phosphatase (DUF442) LIS44_02620 PF00085 Thioredoxin LIS44_02635 PF04461 Protein of unknown function (DUF520) LIS44_02645 PF01266 FAD dependent oxidoreductase LIS44_02645 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LIS44_02660 PF04279 Intracellular septation protein A LIS44_02665 PF02811 PHP domain LIS44_02670 PF01062 Bestrophin, RFP-TM, chloride channel LIS44_02675 PF04002 RadC-like JAB domain LIS44_02680 PF02441 Flavoprotein LIS44_02680 PF04127 DNA / pantothenate metabolism flavoprotein LIS44_02690 PF01207 Dihydrouridine synthase (Dus) LIS44_02705 PF13817 IS66 C-terminal element LIS44_02705 PF13007 Transposase C of IS166 homeodomain LIS44_02705 PF13005 zinc-finger binding domain of transposase IS66 LIS44_02705 PF03050 Transposase IS66 family LIS44_02710 PF07690 Major Facilitator Superfamily LIS44_02720 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LIS44_02720 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LIS44_02725 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LIS44_02730 PF02233 NAD(P) transhydrogenase beta subunit LIS44_02735 PF00909 Ammonium Transporter Family LIS44_02735 PF00672 HAMP domain LIS44_02750 PF01261 Xylose isomerase-like TIM barrel LIS44_02755 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LIS44_02755 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIS44_02760 PF00378 Enoyl-CoA hydratase/isomerase LIS44_02765 PF00672 HAMP domain LIS44_02765 PF00512 His Kinase A (phospho-acceptor) domain LIS44_02765 PF01627 Hpt domain LIS44_02765 PF00072 Response regulator receiver domain LIS44_02765 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LIS44_02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_02770 PF00291 Pyridoxal-phosphate dependent enzyme LIS44_02780 PF05958 tRNA (Uracil-5-)-methyltransferase LIS44_02785 PF04607 Region found in RelA / SpoT proteins LIS44_02785 PF02824 TGS domain LIS44_02785 PF13291 ACT domain LIS44_02800 PF00550 Phosphopantetheine attachment site LIS44_02805 PF00550 Phosphopantetheine attachment site LIS44_02830 PF00221 Aromatic amino acid lyase LIS44_02850 PF04820 Tryptophan halogenase LIS44_02860 PF00109 Beta-ketoacyl synthase, N-terminal domain LIS44_02860 PF02801 Beta-ketoacyl synthase, C-terminal domain LIS44_02875 PF00109 Beta-ketoacyl synthase, N-terminal domain LIS44_02875 PF02801 Beta-ketoacyl synthase, C-terminal domain LIS44_02885 PF02355 Protein export membrane protein LIS44_02885 PF07549 SecD/SecF GG Motif LIS44_02890 PF02355 Protein export membrane protein LIS44_02890 PF13721 SecD export protein N-terminal TM region LIS44_02890 PF07549 SecD/SecF GG Motif LIS44_02895 PF02699 Preprotein translocase subunit LIS44_02900 PF01702 Queuine tRNA-ribosyltransferase LIS44_02910 PF04011 LemA family LIS44_02920 PF02547 Queuosine biosynthesis protein LIS44_02945 PF00672 HAMP domain LIS44_02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_02945 PF00512 His Kinase A (phospho-acceptor) domain LIS44_02945 PF13426 PAS domain LIS44_02950 PF08335 GlnD PII-uridylyltransferase LIS44_02950 PF03710 Glutamate-ammonia ligase adenylyltransferase LIS44_02955 PF01063 Amino-transferase class IV LIS44_02975 PF01522 Polysaccharide deacetylase LIS44_02985 PF00534 Glycosyl transferases group 1 LIS44_02985 PF13439 Glycosyltransferase Family 4 LIS44_03015 PF04230 Polysaccharide pyruvyl transferase LIS44_03025 PF03279 Bacterial lipid A biosynthesis acyltransferase LIS44_03035 PF01336 OB-fold nucleic acid binding domain LIS44_03035 PF00152 tRNA synthetases class II (D, K and N) LIS44_03035 PF02938 GAD domain LIS44_03045 PF00593 TonB dependent receptor LIS44_03045 PF07715 TonB-dependent Receptor Plug Domain LIS44_03065 PF06146 Phosphate-starvation-inducible E LIS44_03075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_03075 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_03075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_03075 PF12806 Acetyl-CoA dehydrogenase C-terminal like LIS44_03080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_03080 PF12806 Acetyl-CoA dehydrogenase C-terminal like LIS44_03080 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_03080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_03090 PF00672 HAMP domain LIS44_03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_03090 PF00512 His Kinase A (phospho-acceptor) domain LIS44_03095 PF00072 Response regulator receiver domain LIS44_03095 PF00486 Transcriptional regulatory protein, C terminal LIS44_03100 PF04237 YjbR LIS44_03105 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LIS44_03125 PF01923 Cobalamin adenosyltransferase LIS44_03130 PF07715 TonB-dependent Receptor Plug Domain LIS44_03130 PF00593 TonB dependent receptor LIS44_03135 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LIS44_03140 PF00291 Pyridoxal-phosphate dependent enzyme LIS44_03160 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LIS44_03160 PF12833 Helix-turn-helix domain LIS44_03165 PF00290 Tryptophan synthase alpha chain LIS44_03170 PF01039 Carboxyl transferase domain LIS44_03190 PF00753 Metallo-beta-lactamase superfamily LIS44_03195 PF10417 C-terminal domain of 1-Cys peroxiredoxin LIS44_03195 PF00578 AhpC/TSA family LIS44_03200 PF02810 SEC-C motif LIS44_03200 PF07517 SecA DEAD-like domain LIS44_03200 PF01043 SecA preprotein cross-linking domain LIS44_03200 PF07516 SecA Wing and Scaffold domain LIS44_03215 PF02445 Quinolinate synthetase A protein LIS44_03265 PF04552 Sigma-54, DNA binding domain LIS44_03265 PF04963 Sigma-54 factor, core binding domain LIS44_03265 PF00309 Sigma-54 factor, Activator interacting domain (AID) LIS44_03270 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LIS44_03275 PF01722 BolA-like protein LIS44_03285 PF01634 ATP phosphoribosyltransferase LIS44_03295 PF00155 Aminotransferase class I and II LIS44_03300 PF00425 chorismate binding enzyme LIS44_03300 PF04715 Anthranilate synthase component I, N terminal region LIS44_03340 PF00293 NUDIX domain LIS44_03345 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_03355 PF02673 Bacitracin resistance protein BacA LIS44_03360 PF04445 Putative SAM-dependent methyltransferase LIS44_03370 PF00756 Putative esterase LIS44_03375 PF00834 Ribulose-phosphate 3 epimerase family LIS44_03400 PF00394 Multicopper oxidase LIS44_03400 PF07731 Multicopper oxidase LIS44_03400 PF07732 Multicopper oxidase LIS44_03410 PF00893 Small Multidrug Resistance protein LIS44_03415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LIS44_03415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIS44_03420 PF08378 Nuclease-related domain LIS44_03425 PF01207 Dihydrouridine synthase (Dus) LIS44_03430 PF07690 Major Facilitator Superfamily LIS44_03435 PF00171 Aldehyde dehydrogenase family LIS44_03435 PF01575 MaoC like domain LIS44_03440 PF05138 Phenylacetic acid catabolic protein LIS44_03445 PF06243 Phenylacetic acid degradation B LIS44_03450 PF05138 Phenylacetic acid catabolic protein LIS44_03460 PF00970 Oxidoreductase FAD-binding domain LIS44_03460 PF00111 2Fe-2S iron-sulfur cluster binding domain LIS44_03460 PF00175 Oxidoreductase NAD-binding domain LIS44_03470 PF00378 Enoyl-CoA hydratase/isomerase LIS44_03475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIS44_03475 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LIS44_03475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIS44_03480 PF02803 Thiolase, C-terminal domain LIS44_03480 PF00108 Thiolase, N-terminal domain LIS44_03485 PF00501 AMP-binding enzyme LIS44_03485 PF14535 AMP-binding enzyme C-terminal domain LIS44_03490 PF08223 PaaX-like protein C-terminal domain LIS44_03490 PF07848 PaaX-like protein LIS44_03495 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_03510 PF02978 Signal peptide binding domain LIS44_03510 PF02881 SRP54-type protein, helical bundle domain LIS44_03510 PF00448 SRP54-type protein, GTPase domain LIS44_03520 PF03309 Type III pantothenate kinase LIS44_03530 PF01925 Sulfite exporter TauE/SafE LIS44_03540 PF06470 SMC proteins Flexible Hinge Domain LIS44_03540 PF02463 RecF/RecN/SMC N terminal domain LIS44_03550 PF00533 BRCA1 C Terminus (BRCT) domain LIS44_03550 PF01653 NAD-dependent DNA ligase adenylation domain LIS44_03550 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LIS44_03550 PF03120 NAD-dependent DNA ligase OB-fold domain LIS44_03550 PF12826 Helix-hairpin-helix motif LIS44_03555 PF05971 RNA methyltransferase LIS44_03560 PF00210 Ferritin-like domain LIS44_03565 PF00578 AhpC/TSA family LIS44_03575 PF04055 Radical SAM superfamily LIS44_03575 PF06968 Biotin and Thiamin Synthesis associated domain LIS44_03575 PF00202 Aminotransferase class-III LIS44_03580 PF00155 Aminotransferase class I and II LIS44_03605 PF04079 Segregation and condensation complex subunit ScpB LIS44_03610 PF02616 Segregation and condensation protein ScpA LIS44_03625 PF01300 Telomere recombination LIS44_03630 PF04315 Elongation factor P hydroxylase LIS44_03635 PF02620 Large ribosomal RNA subunit accumulation protein YceD LIS44_03640 PF01783 Ribosomal L32p protein family LIS44_03645 PF00698 Acyl transferase domain LIS44_03655 PF00550 Phosphopantetheine attachment site LIS44_03660 PF04972 BON domain LIS44_03660 PF01476 LysM domain LIS44_03670 PF12697 Alpha/beta hydrolase family LIS44_03680 PF05154 TM2 domain LIS44_03685 PF05656 Protein of unknown function (DUF805) LIS44_03695 PF00268 Ribonucleotide reductase, small chain LIS44_03710 PF00317 Ribonucleotide reductase, all-alpha domain LIS44_03710 PF02867 Ribonucleotide reductase, barrel domain LIS44_03710 PF03477 ATP cone domain LIS44_03715 PF00486 Transcriptional regulatory protein, C terminal LIS44_03715 PF00072 Response regulator receiver domain LIS44_03720 PF00672 HAMP domain LIS44_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_03720 PF00512 His Kinase A (phospho-acceptor) domain LIS44_03730 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LIS44_03735 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LIS44_03740 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LIS44_03740 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LIS44_03750 PF10531 SLBB domain LIS44_03750 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LIS44_03750 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LIS44_03755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIS44_03755 PF00384 Molybdopterin oxidoreductase LIS44_03755 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LIS44_03765 PF12838 4Fe-4S dicluster domain LIS44_03770 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LIS44_03775 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LIS44_03780 PF00361 Proton-conducting membrane transporter LIS44_03780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIS44_03810 PF00313 'Cold-shock' DNA-binding domain LIS44_03815 PF03466 LysR substrate binding domain LIS44_03815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_03820 PF00970 Oxidoreductase FAD-binding domain LIS44_03820 PF00175 Oxidoreductase NAD-binding domain LIS44_03855 PF00291 Pyridoxal-phosphate dependent enzyme LIS44_03880 PF08338 Domain of unknown function (DUF1731) LIS44_03880 PF01370 NAD dependent epimerase/dehydratase family LIS44_03885 PF01266 FAD dependent oxidoreductase LIS44_03890 PF00490 Delta-aminolevulinic acid dehydratase LIS44_03895 PF03061 Thioesterase superfamily LIS44_03900 PF00529 HlyD membrane-fusion protein of T1SS LIS44_03900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIS44_03905 PF07690 Major Facilitator Superfamily LIS44_03910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIS44_03910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIS44_03920 PF00589 Phage integrase family LIS44_03920 PF13356 Arm DNA-binding domain LIS44_04005 PF13005 zinc-finger binding domain of transposase IS66 LIS44_04005 PF13817 IS66 C-terminal element LIS44_04005 PF03050 Transposase IS66 family LIS44_04005 PF13007 Transposase C of IS166 homeodomain LIS44_04095 PF03793 PASTA domain LIS44_04095 PF00069 Protein kinase domain LIS44_04105 PF09382 RQC domain LIS44_04105 PF00271 Helicase conserved C-terminal domain LIS44_04105 PF00570 HRDC domain LIS44_04105 PF16124 RecQ zinc-binding LIS44_04105 PF00270 DEAD/DEAH box helicase LIS44_04115 PF00202 Aminotransferase class-III LIS44_04120 PF00171 Aldehyde dehydrogenase family LIS44_04130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LIS44_04135 PF00866 Ring hydroxylating beta subunit LIS44_04140 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LIS44_04140 PF00355 Rieske [2Fe-2S] domain LIS44_04160 PF10609 NUBPL iron-transfer P-loop NTPase LIS44_04175 PF00692 dUTPase LIS44_04200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIS44_04200 PF04073 Aminoacyl-tRNA editing domain LIS44_04200 PF03129 Anticodon binding domain LIS44_04205 PF00873 AcrB/AcrD/AcrF family LIS44_04210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIS44_04220 PF00072 Response regulator receiver domain LIS44_04225 PF00072 Response regulator receiver domain LIS44_04230 PF01584 CheW-like domain LIS44_04235 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LIS44_04235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIS44_04240 PF00072 Response regulator receiver domain LIS44_04240 PF02895 Signal transducing histidine kinase, homodimeric domain LIS44_04240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_04240 PF01584 CheW-like domain LIS44_04240 PF01627 Hpt domain LIS44_04270 PF01476 LysM domain LIS44_04270 PF03734 L,D-transpeptidase catalytic domain LIS44_04325 PF00667 FAD binding domain LIS44_04325 PF00258 Flavodoxin LIS44_04325 PF00175 Oxidoreductase NAD-binding domain LIS44_04335 PF12805 FUSC-like inner membrane protein yccS LIS44_04340 PF07690 Major Facilitator Superfamily LIS44_04350 PF01734 Patatin-like phospholipase LIS44_04370 PF03061 Thioesterase superfamily LIS44_04375 PF16859 Tetracyclin repressor-like, C-terminal domain LIS44_04375 PF00440 Bacterial regulatory proteins, tetR family LIS44_04380 PF07690 Major Facilitator Superfamily LIS44_04385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_04385 PF03466 LysR substrate binding domain LIS44_04390 PF00043 Glutathione S-transferase, C-terminal domain LIS44_04390 PF02798 Glutathione S-transferase, N-terminal domain LIS44_04395 PF01494 FAD binding domain LIS44_04405 PF02492 CobW/HypB/UreG, nucleotide-binding domain LIS44_04405 PF07683 Cobalamin synthesis protein cobW C-terminal domain LIS44_04410 PF07152 YaeQ protein LIS44_04415 PF02308 MgtC family LIS44_04420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIS44_04425 PF00990 Diguanylate cyclase, GGDEF domain LIS44_04425 PF00360 Phytochrome region LIS44_04425 PF00563 EAL domain LIS44_04425 PF01590 GAF domain LIS44_04430 PF14883 Hypothetical glycosyl hydrolase family 13 LIS44_04430 PF01522 Polysaccharide deacetylase LIS44_04465 PF00378 Enoyl-CoA hydratase/isomerase LIS44_04490 PF01327 Polypeptide deformylase LIS44_04500 PF17151 Periplasmic sensor domain LIS44_04500 PF00990 Diguanylate cyclase, GGDEF domain LIS44_04505 PF02574 Homocysteine S-methyltransferase LIS44_04505 PF00809 Pterin binding enzyme LIS44_04505 PF02965 Vitamin B12 dependent methionine synthase, activation domain LIS44_04505 PF02607 B12 binding domain LIS44_04505 PF02310 B12 binding domain LIS44_04525 PF01521 Iron-sulphur cluster biosynthesis LIS44_04525 PF01106 NifU-like domain LIS44_04555 PF13472 GDSL-like Lipase/Acylhydrolase family LIS44_04560 PF00005 ABC transporter LIS44_04570 PF01694 Rhomboid family LIS44_04575 PF00912 Transglycosylase LIS44_04580 PF13089 Polyphosphate kinase N-terminal domain LIS44_04580 PF17941 Polyphosphate kinase C-terminal domain 1 LIS44_04580 PF02503 Polyphosphate kinase middle domain LIS44_04580 PF13090 Polyphosphate kinase C-terminal domain 2 LIS44_04585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_04585 PF03466 LysR substrate binding domain LIS44_04590 PF00561 alpha/beta hydrolase fold LIS44_04595 PF18113 Rubredoxin binding C-terminal domain LIS44_04595 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_04600 PF00301 Rubredoxin LIS44_04605 PF00156 Phosphoribosyl transferase domain LIS44_04630 PF05661 Protein of unknown function (DUF808) LIS44_04635 PF04228 Putative neutral zinc metallopeptidase LIS44_04645 PF00999 Sodium/hydrogen exchanger family LIS44_04650 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIS44_04665 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_04670 PF01042 Endoribonuclease L-PSP LIS44_04675 PF00440 Bacterial regulatory proteins, tetR family LIS44_04680 PF01272 Transcription elongation factor, GreA/GreB, C-term LIS44_04680 PF03449 Transcription elongation factor, N-terminal LIS44_04685 PF02142 MGS-like domain LIS44_04685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIS44_04685 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LIS44_04690 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LIS44_04690 PF00117 Glutamine amidotransferase class-I LIS44_04700 PF00872 Transposase, Mutator family LIS44_04710 PF01985 CRS1 / YhbY (CRM) domain LIS44_04715 PF01728 FtsJ-like methyltransferase LIS44_04720 PF06480 FtsH Extracellular LIS44_04720 PF17862 AAA+ lid domain LIS44_04720 PF01434 Peptidase family M41 LIS44_04720 PF00004 ATPase family associated with various cellular activities (AAA) LIS44_04725 PF00809 Pterin binding enzyme LIS44_04770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_04770 PF03466 LysR substrate binding domain LIS44_04775 PF00463 Isocitrate lyase family LIS44_04780 PF01219 Prokaryotic diacylglycerol kinase LIS44_04785 PF00873 AcrB/AcrD/AcrF family LIS44_04795 PF01435 Peptidase family M48 LIS44_04800 PF01551 Peptidase family M23 LIS44_04800 PF10145 Phage-related minor tail protein LIS44_04800 PF01464 Transglycosylase SLT domain LIS44_04815 PF01464 Transglycosylase SLT domain LIS44_04815 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIS44_04835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIS44_04855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIS44_04855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIS44_04855 PF11890 Domain of unknown function (DUF3410) LIS44_04860 PF00152 tRNA synthetases class II (D, K and N) LIS44_04865 PF01743 Poly A polymerase head domain LIS44_04865 PF12627 Probable RNA and SrmB- binding site of polymerase A LIS44_04875 PF00563 EAL domain LIS44_04875 PF00990 Diguanylate cyclase, GGDEF domain LIS44_04875 PF03707 Bacterial signalling protein N terminal repeat LIS44_04880 PF04452 RNA methyltransferase LIS44_04885 PF02219 Methylenetetrahydrofolate reductase LIS44_04890 PF05221 S-adenosyl-L-homocysteine hydrolase LIS44_04890 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LIS44_04915 PF18073 Rubredoxin metal binding domain LIS44_04920 PF00324 Amino acid permease LIS44_04930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LIS44_04930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LIS44_04935 PF01678 Diaminopimelate epimerase LIS44_04940 PF00561 alpha/beta hydrolase fold LIS44_04945 PF00589 Phage integrase family LIS44_04945 PF02899 Phage integrase, N-terminal SAM-like domain LIS44_04955 PF01037 Lrp/AsnC ligand binding domain LIS44_04960 PF01810 LysE type translocator LIS44_04965 PF01012 Electron transfer flavoprotein domain LIS44_04975 PF00521 DNA gyrase/topoisomerase IV, subunit A LIS44_04975 PF03989 DNA gyrase C-terminal domain, beta-propeller LIS44_04990 PF00375 Sodium:dicarboxylate symporter family LIS44_05005 PF13533 Biotin-lipoyl like LIS44_05015 PF00266 Aminotransferase class-V LIS44_05030 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LIS44_05035 PF00892 EamA-like transporter family LIS44_05045 PF12704 MacB-like periplasmic core domain LIS44_05045 PF02687 FtsX-like permease family LIS44_05050 PF00005 ABC transporter LIS44_05065 PF06965 Na+/H+ antiporter 1 LIS44_05065 PF01343 Peptidase family S49 LIS44_05075 PF00551 Formyl transferase LIS44_05080 PF00586 AIR synthase related protein, N-terminal domain LIS44_05080 PF02769 AIR synthase related protein, C-terminal domain LIS44_05085 PF01594 AI-2E family transporter LIS44_05090 PF00308 Bacterial dnaA protein LIS44_05090 PF08299 Bacterial dnaA protein helix-turn-helix LIS44_05090 PF11638 DnaA N-terminal domain LIS44_05120 PF00588 SpoU rRNA Methylase family LIS44_05120 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIS44_05125 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LIS44_05135 PF00691 OmpA family LIS44_05140 PF07676 WD40-like Beta Propeller Repeat LIS44_05140 PF04052 TolB amino-terminal domain LIS44_05150 PF02472 Biopolymer transport protein ExbD/TolR LIS44_05155 PF01618 MotA/TolQ/ExbB proton channel family LIS44_05160 PF03061 Thioesterase superfamily LIS44_05165 PF01546 Peptidase family M20/M25/M40 LIS44_05165 PF07687 Peptidase dimerisation domain LIS44_05180 PF05496 Holliday junction DNA helicase RuvB P-loop domain LIS44_05180 PF05491 RuvB C-terminal winged helix domain LIS44_05180 PF17864 RuvB AAA lid domain LIS44_05185 PF01330 RuvA N terminal domain LIS44_05185 PF07499 RuvA, C-terminal domain LIS44_05190 PF01966 HD domain LIS44_05205 PF01784 NIF3 (NGG1p interacting factor 3) LIS44_05210 PF00881 Nitroreductase family LIS44_05215 PF00378 Enoyl-CoA hydratase/isomerase LIS44_05220 PF01467 Cytidylyltransferase-like LIS44_05220 PF00293 NUDIX domain LIS44_05225 PF04264 YceI-like domain LIS44_05230 PF03466 LysR substrate binding domain LIS44_05230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_05235 PF01810 LysE type translocator LIS44_05240 PF00578 AhpC/TSA family LIS44_05255 PF04055 Radical SAM superfamily LIS44_05260 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LIS44_05260 PF14602 Hexapeptide repeat of succinyl-transferase LIS44_05260 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_05275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_05275 PF03466 LysR substrate binding domain LIS44_05280 PF00005 ABC transporter LIS44_05280 PF12857 TOBE-like domain LIS44_05285 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_05290 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_05315 PF02618 YceG-like family LIS44_05320 PF02223 Thymidylate kinase LIS44_05330 PF00890 FAD binding domain LIS44_05330 PF02910 Fumarate reductase flavoprotein C-term LIS44_05335 PF13180 PDZ domain LIS44_05345 PF00679 Elongation factor G C-terminus LIS44_05345 PF00009 Elongation factor Tu GTP binding domain LIS44_05345 PF06421 GTP-binding protein LepA C-terminus LIS44_05345 PF03144 Elongation factor Tu domain 2 LIS44_05350 PF10502 Signal peptidase, peptidase S26 LIS44_05360 PF14622 Ribonuclease-III-like LIS44_05360 PF00035 Double-stranded RNA binding motif LIS44_05365 PF07650 KH domain LIS44_05365 PF01926 50S ribosome-binding GTPase LIS44_05375 PF02565 Recombination protein O C terminal LIS44_05375 PF11967 Recombination protein O N terminal LIS44_05385 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LIS44_05390 PF04055 Radical SAM superfamily LIS44_05395 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_05395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIS44_05405 PF02417 Chromate transporter LIS44_05410 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LIS44_05430 PF00990 Diguanylate cyclase, GGDEF domain LIS44_05430 PF08448 PAS fold LIS44_05440 PF00271 Helicase conserved C-terminal domain LIS44_05440 PF04851 Type III restriction enzyme, res subunit LIS44_05440 PF02151 UvrB/uvrC motif LIS44_05440 PF12344 Ultra-violet resistance protein B LIS44_05440 PF17757 UvrB interaction domain LIS44_05450 PF00892 EamA-like transporter family LIS44_05455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LIS44_05455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LIS44_05460 PF01638 HxlR-like helix-turn-helix LIS44_05465 PF07690 Major Facilitator Superfamily LIS44_05470 PF01926 50S ribosome-binding GTPase LIS44_05470 PF01018 GTP1/OBG LIS44_05475 PF00696 Amino acid kinase family LIS44_05475 PF01472 PUA domain LIS44_05480 PF01569 PAP2 superfamily LIS44_05490 PF00202 Aminotransferase class-III LIS44_05495 PF00282 Pyridoxal-dependent decarboxylase conserved domain LIS44_05500 PF12849 PBP superfamily domain LIS44_05505 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_05510 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_05535 PF08328 Adenylosuccinate lyase C-terminal LIS44_05535 PF00206 Lyase LIS44_05550 PF00293 NUDIX domain LIS44_05570 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_05575 PF00768 D-alanyl-D-alanine carboxypeptidase LIS44_05575 PF07943 Penicillin-binding protein 5, C-terminal domain LIS44_05590 PF01975 Survival protein SurE LIS44_05595 PF01551 Peptidase family M23 LIS44_05595 PF01476 LysM domain LIS44_05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_05600 PF03466 LysR substrate binding domain LIS44_05605 PF00202 Aminotransferase class-III LIS44_05610 PF00462 Glutaredoxin LIS44_05615 PF13654 AAA domain LIS44_05615 PF05362 Lon protease (S16) C-terminal proteolytic domain LIS44_05620 PF07690 Major Facilitator Superfamily LIS44_05625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIS44_05635 PF01197 Ribosomal protein L31 LIS44_05650 PF04055 Radical SAM superfamily LIS44_05660 PF02554 Carbon starvation protein CstA LIS44_05660 PF13722 5TM C-terminal transporter carbon starvation CstA LIS44_05670 PF17863 AAA lid domain LIS44_05670 PF07726 ATPase family associated with various cellular activities (AAA) LIS44_05680 PF11992 Domain of unknown function (DUF3488) LIS44_05680 PF13559 Domain of unknown function (DUF4129) LIS44_05680 PF01841 Transglutaminase-like superfamily LIS44_05690 PF00589 Phage integrase family LIS44_05700 PF01609 Transposase DDE domain LIS44_05700 PF13006 Insertion element 4 transposase N-terminal LIS44_05705 PF13006 Insertion element 4 transposase N-terminal LIS44_05705 PF01609 Transposase DDE domain LIS44_05760 PF13192 Thioredoxin domain LIS44_05760 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_05765 PF00037 4Fe-4S binding domain LIS44_05770 PF16325 Peptidase family U32 C-terminal domain LIS44_05770 PF01136 Peptidase family U32 LIS44_05775 PF13411 MerR HTH family regulatory protein LIS44_05790 PF00970 Oxidoreductase FAD-binding domain LIS44_05790 PF00175 Oxidoreductase NAD-binding domain LIS44_05795 PF18389 TrmO C-terminal domain LIS44_05795 PF01980 tRNA-methyltransferase O LIS44_05805 PF00437 Type II/IV secretion system protein LIS44_05815 PF00072 Response regulator receiver domain LIS44_05815 PF00486 Transcriptional regulatory protein, C terminal LIS44_05820 PF08521 Two-component sensor kinase N-terminal LIS44_05820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_05820 PF00512 His Kinase A (phospho-acceptor) domain LIS44_05830 PF00293 NUDIX domain LIS44_05840 PF00912 Transglycosylase LIS44_05840 PF00905 Penicillin binding protein transpeptidase domain LIS44_05840 PF14814 Bifunctional transglycosylase second domain LIS44_05845 PF01513 ATP-NAD kinase LIS44_05850 PF07023 Protein of unknown function (DUF1315) LIS44_05855 PF02885 Glycosyl transferase family, helical bundle domain LIS44_05855 PF00591 Glycosyl transferase family, a/b domain LIS44_05860 PF00375 Sodium:dicarboxylate symporter family LIS44_05865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_05865 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_05865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_05870 PF01965 DJ-1/PfpI family LIS44_05875 PF01842 ACT domain LIS44_05875 PF01817 Chorismate mutase type II LIS44_05875 PF00800 Prephenate dehydratase LIS44_05880 PF00155 Aminotransferase class I and II LIS44_05885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIS44_05900 PF03883 Peroxide stress protein YaaA LIS44_05910 PF00860 Permease family LIS44_05915 PF00962 Adenosine/AMP deaminase LIS44_05925 PF01292 Prokaryotic cytochrome b561 LIS44_05935 PF01351 Ribonuclease HII LIS44_05940 PF02599 Global regulator protein family LIS44_05945 PF00696 Amino acid kinase family LIS44_05945 PF01842 ACT domain LIS44_05945 PF13840 ACT domain LIS44_05950 PF02272 DHHA1 domain LIS44_05950 PF01411 tRNA synthetases class II (A) LIS44_05950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIS44_05955 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LIS44_05955 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LIS44_05965 PF13393 Histidyl-tRNA synthetase LIS44_05970 PF00709 Adenylosuccinate synthetase LIS44_05985 PF00248 Aldo/keto reductase family LIS44_05990 PF13545 Crp-like helix-turn-helix domain LIS44_05990 PF00027 Cyclic nucleotide-binding domain LIS44_05995 PF02566 OsmC-like protein LIS44_06000 PF00004 ATPase family associated with various cellular activities (AAA) LIS44_06000 PF07724 AAA domain (Cdc48 subfamily) LIS44_06000 PF17871 AAA lid domain LIS44_06000 PF02861 Clp amino terminal domain, pathogenicity island component LIS44_06000 PF10431 C-terminal, D2-small domain, of ClpB protein LIS44_06015 PF10672 S-adenosylmethionine-dependent methyltransferase LIS44_06015 PF02926 THUMP domain LIS44_06015 PF01170 Putative RNA methylase family UPF0020 LIS44_06020 PF13613 Helix-turn-helix of DDE superfamily endonuclease LIS44_06020 PF13359 DDE superfamily endonuclease LIS44_06035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIS44_06035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIS44_06040 PF01979 Amidohydrolase family LIS44_06045 PF00691 OmpA family LIS44_06045 PF05736 OprF membrane domain LIS44_06060 PF02390 Putative methyltransferase LIS44_06065 PF00916 Sulfate permease family LIS44_06065 PF01740 STAS domain LIS44_06070 PF00043 Glutathione S-transferase, C-terminal domain LIS44_06070 PF02798 Glutathione S-transferase, N-terminal domain LIS44_06080 PF03992 Antibiotic biosynthesis monooxygenase LIS44_06085 PF05690 Thiazole biosynthesis protein ThiG LIS44_06095 PF04241 Protein of unknown function (DUF423) LIS44_06100 PF04545 Sigma-70, region 4 LIS44_06100 PF00140 Sigma-70 factor, region 1.2 LIS44_06100 PF04542 Sigma-70 region 2 LIS44_06110 PF00313 'Cold-shock' DNA-binding domain LIS44_06115 PF00270 DEAD/DEAH box helicase LIS44_06115 PF00271 Helicase conserved C-terminal domain LIS44_06125 PF00881 Nitroreductase family LIS44_06130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIS44_06130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIS44_06150 PF01180 Dihydroorotate dehydrogenase LIS44_06160 PF00156 Phosphoribosyl transferase domain LIS44_06180 PF01435 Peptidase family M48 LIS44_06180 PF13181 Tetratricopeptide repeat LIS44_06195 PF09424 Yqey-like protein LIS44_06200 PF01165 Ribosomal protein S21 LIS44_06205 PF00814 Glycoprotease family LIS44_06220 PF03793 PASTA domain LIS44_06220 PF00069 Protein kinase domain LIS44_06255 PF00753 Metallo-beta-lactamase superfamily LIS44_06255 PF16123 Hydroxyacylglutathione hydrolase C-terminus LIS44_06265 PF02567 Phenazine biosynthesis-like protein LIS44_06270 PF05193 Peptidase M16 inactive domain LIS44_06270 PF00675 Insulinase (Peptidase family M16) LIS44_06295 PF01928 CYTH domain LIS44_06305 PF02581 Thiamine monophosphate synthase LIS44_06310 PF00202 Aminotransferase class-III LIS44_06315 PF03928 Haem-degrading LIS44_06325 PF00849 RNA pseudouridylate synthase LIS44_06330 PF18337 RapA N-terminal Tudor like domain LIS44_06330 PF00271 Helicase conserved C-terminal domain LIS44_06330 PF18339 RapA N-terminal Tudor like domain 1 LIS44_06330 PF12137 RNA polymerase recycling family C-terminal LIS44_06330 PF00176 SNF2 family N-terminal domain LIS44_06345 PF00440 Bacterial regulatory proteins, tetR family LIS44_06350 PF00175 Oxidoreductase NAD-binding domain LIS44_06350 PF00970 Oxidoreductase FAD-binding domain LIS44_06350 PF00111 2Fe-2S iron-sulfur cluster binding domain LIS44_06355 PF00487 Fatty acid desaturase LIS44_06365 PF07759 Protein of unknown function (DUF1615) LIS44_06370 PF01207 Dihydrouridine synthase (Dus) LIS44_06380 PF03060 Nitronate monooxygenase LIS44_06415 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_06415 PF13192 Thioredoxin domain LIS44_06435 PF10417 C-terminal domain of 1-Cys peroxiredoxin LIS44_06435 PF00578 AhpC/TSA family LIS44_06445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIS44_06445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIS44_06460 PF05970 PIF1-like helicase LIS44_06460 PF14493 Helix-turn-helix domain LIS44_06465 PF00520 Ion transport protein LIS44_06465 PF00027 Cyclic nucleotide-binding domain LIS44_06475 PF01717 Cobalamin-independent synthase, Catalytic domain LIS44_06475 PF08267 Cobalamin-independent synthase, N-terminal domain LIS44_06490 PF07690 Major Facilitator Superfamily LIS44_06495 PF04284 Protein of unknown function (DUF441) LIS44_06500 PF01479 S4 domain LIS44_06500 PF00849 RNA pseudouridylate synthase LIS44_06520 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LIS44_06525 PF08676 MutL C terminal dimerisation domain LIS44_06525 PF01119 DNA mismatch repair protein, C-terminal domain LIS44_06535 PF17209 Hfq protein LIS44_06540 PF09312 SurA N-terminal domain LIS44_06540 PF00639 PPIC-type PPIASE domain LIS44_06545 PF03968 OstA-like protein LIS44_06545 PF04453 LPS transport system D LIS44_06550 PF01636 Phosphotransferase enzyme family LIS44_06555 PF00483 Nucleotidyl transferase LIS44_06560 PF02527 rRNA small subunit methyltransferase G LIS44_06565 PF13614 AAA domain LIS44_06570 PF02195 ParB-like nuclease domain LIS44_06570 PF17762 HTH domain found in ParB protein LIS44_06575 PF01618 MotA/TolQ/ExbB proton channel family LIS44_06585 PF00005 ABC transporter LIS44_06585 PF00664 ABC transporter transmembrane region LIS44_06590 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LIS44_06595 PF02348 Cytidylyltransferase LIS44_06610 PF01026 TatD related DNase LIS44_06620 PF12019 Type II transport protein GspH LIS44_06620 PF07963 Prokaryotic N-terminal methylation motif LIS44_06625 PF07963 Prokaryotic N-terminal methylation motif LIS44_06625 PF02501 Type II secretion system (T2SS), protein I LIS44_06630 PF11612 Type II secretion system (T2SS), protein J LIS44_06630 PF07963 Prokaryotic N-terminal methylation motif LIS44_06635 PF03934 Type II secretion system (T2SS), protein K LIS44_06645 PF03167 Uracil DNA glycosylase superfamily LIS44_06655 PF14437 MafB19-like deaminase LIS44_06665 PF02224 Cytidylate kinase LIS44_06670 PF00575 S1 RNA binding domain LIS44_06675 PF00216 Bacterial DNA-binding protein LIS44_06685 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIS44_06690 PF03956 Lysine exporter LysO LIS44_06700 PF13358 DDE superfamily endonuclease LIS44_06720 PF03969 AFG1-like ATPase LIS44_06730 PF00872 Transposase, Mutator family LIS44_06775 PF02110 Hydroxyethylthiazole kinase family LIS44_06790 PF11940 Domain of unknown function (DUF3458) Ig-like fold LIS44_06790 PF01433 Peptidase family M1 domain LIS44_06790 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LIS44_06800 PF00582 Universal stress protein family LIS44_06805 PF00582 Universal stress protein family LIS44_06810 PF00135 Carboxylesterase family LIS44_06815 PF03594 Benzoate membrane transport protein LIS44_06820 PF01810 LysE type translocator LIS44_06830 PF03466 LysR substrate binding domain LIS44_06830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_06840 PF00108 Thiolase, N-terminal domain LIS44_06840 PF02803 Thiolase, C-terminal domain LIS44_06860 PF00144 Beta-lactamase LIS44_06870 PF00872 Transposase, Mutator family LIS44_06890 PF12169 DNA polymerase III subunits gamma and tau domain III LIS44_06890 PF12170 DNA polymerase III tau subunit V interacting with alpha LIS44_06890 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LIS44_06895 PF03061 Thioesterase superfamily LIS44_06905 PF01451 Low molecular weight phosphotyrosine protein phosphatase LIS44_06910 PF01565 FAD binding domain LIS44_06910 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LIS44_06925 PF01645 Conserved region in glutamate synthase LIS44_06935 PF14403 Circularly permuted ATP-grasp type 2 LIS44_06945 PF08379 Bacterial transglutaminase-like N-terminal region LIS44_06945 PF01841 Transglutaminase-like superfamily LIS44_06955 PF00842 Alanine racemase, C-terminal domain LIS44_06955 PF01168 Alanine racemase, N-terminal domain LIS44_06965 PF01281 Ribosomal protein L9, N-terminal domain LIS44_06965 PF03948 Ribosomal protein L9, C-terminal domain LIS44_06970 PF01084 Ribosomal protein S18 LIS44_06975 PF01250 Ribosomal protein S6 LIS44_06980 PF01040 UbiA prenyltransferase family LIS44_06985 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LIS44_06990 PF00510 Cytochrome c oxidase subunit III LIS44_06995 PF00115 Cytochrome C and Quinol oxidase polypeptide I LIS44_07010 PF02896 PEP-utilising enzyme, TIM barrel domain LIS44_07010 PF00391 PEP-utilising enzyme, mobile domain LIS44_07010 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LIS44_07015 PF03618 Kinase/pyrophosphorylase LIS44_07030 PF00296 Luciferase-like monooxygenase LIS44_07045 PF03462 PCRF domain LIS44_07045 PF00472 RF-1 domain LIS44_07050 PF13847 Methyltransferase domain LIS44_07050 PF17827 PrmC N-terminal domain LIS44_07055 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_07060 PF09084 NMT1/THI5 like LIS44_07075 PF00106 short chain dehydrogenase LIS44_07080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_07080 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_07080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_07085 PF13193 AMP-binding enzyme C-terminal domain LIS44_07085 PF00501 AMP-binding enzyme LIS44_07090 PF00899 ThiF family LIS44_07095 PF03109 ABC1 family LIS44_07100 PF02152 Dihydroneopterin aldolase LIS44_07110 PF05922 Peptidase inhibitor I9 LIS44_07110 PF00082 Subtilase family LIS44_07115 PF06865 Pyrimidine/purine nucleoside phosphorylase LIS44_07120 PF03232 Ubiquinone biosynthesis protein COQ7 LIS44_07125 PF07690 Major Facilitator Superfamily LIS44_07130 PF01103 Surface antigen LIS44_07130 PF17243 POTRA domain TamA domain 1 LIS44_07130 PF07244 Surface antigen variable number repeat LIS44_07145 PF00313 'Cold-shock' DNA-binding domain LIS44_07160 PF00330 Aconitase family (aconitate hydratase) LIS44_07160 PF06434 Aconitate hydratase 2 N-terminus LIS44_07160 PF11791 Aconitate B N-terminal domain LIS44_07165 PF00990 Diguanylate cyclase, GGDEF domain LIS44_07190 PF00557 Metallopeptidase family M24 LIS44_07195 PF03466 LysR substrate binding domain LIS44_07195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_07200 PF02146 Sir2 family LIS44_07205 PF12697 Alpha/beta hydrolase family LIS44_07215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIS44_07215 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_07270 PF12832 MFS_1 like family LIS44_07280 PF02785 Biotin carboxylase C-terminal domain LIS44_07280 PF00289 Biotin carboxylase, N-terminal domain LIS44_07280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIS44_07285 PF00364 Biotin-requiring enzyme LIS44_07290 PF01220 Dehydroquinase class II LIS44_07305 PF00717 Peptidase S24-like LIS44_07325 PF00561 alpha/beta hydrolase fold LIS44_07380 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LIS44_07395 PF05947 Type VI secretion system, TssF LIS44_07410 PF13613 Helix-turn-helix of DDE superfamily endonuclease LIS44_07410 PF13359 DDE superfamily endonuclease LIS44_07415 PF06744 Type VI secretion protein IcmF C-terminal LIS44_07415 PF14331 ImcF-related N-terminal domain LIS44_07415 PF06761 Intracellular multiplication and human macrophage-killing LIS44_07420 PF00691 OmpA family LIS44_07420 PF13488 Glycine zipper LIS44_07425 PF01425 Amidase LIS44_07430 PF00155 Aminotransferase class I and II LIS44_07430 PF00392 Bacterial regulatory proteins, gntR family LIS44_07445 PF00005 ABC transporter LIS44_07450 PF12704 MacB-like periplasmic core domain LIS44_07450 PF02687 FtsX-like permease family LIS44_07465 PF07690 Major Facilitator Superfamily LIS44_07470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_07470 PF03466 LysR substrate binding domain LIS44_07480 PF02426 Muconolactone delta-isomerase LIS44_07495 PF00866 Ring hydroxylating beta subunit LIS44_07500 PF00175 Oxidoreductase NAD-binding domain LIS44_07500 PF00111 2Fe-2S iron-sulfur cluster binding domain LIS44_07500 PF00970 Oxidoreductase FAD-binding domain LIS44_07505 PF00106 short chain dehydrogenase LIS44_07515 PF01144 Coenzyme A transferase LIS44_07520 PF01144 Coenzyme A transferase LIS44_07525 PF02803 Thiolase, C-terminal domain LIS44_07525 PF00108 Thiolase, N-terminal domain LIS44_07530 PF12146 Serine aminopeptidase, S33 LIS44_07540 PF18381 YcaO cyclodehydratase C-terminal domain LIS44_07540 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LIS44_07565 PF07690 Major Facilitator Superfamily LIS44_07585 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LIS44_07585 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LIS44_07590 PF00108 Thiolase, N-terminal domain LIS44_07590 PF02803 Thiolase, C-terminal domain LIS44_07595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_07595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_07595 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_07595 PF12806 Acetyl-CoA dehydrogenase C-terminal like LIS44_07600 PF00440 Bacterial regulatory proteins, tetR family LIS44_07600 PF08360 QacR-like protein, C-terminal region LIS44_07605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_07605 PF03466 LysR substrate binding domain LIS44_07610 PF00291 Pyridoxal-phosphate dependent enzyme LIS44_07625 PF01740 STAS domain LIS44_07625 PF00916 Sulfate permease family LIS44_07630 PF00375 Sodium:dicarboxylate symporter family LIS44_07640 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LIS44_07650 PF03441 FAD binding domain of DNA photolyase LIS44_07650 PF00875 DNA photolyase LIS44_07660 PF00664 ABC transporter transmembrane region LIS44_07660 PF00005 ABC transporter LIS44_07670 PF12833 Helix-turn-helix domain LIS44_07670 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LIS44_07675 PF01597 Glycine cleavage H-protein LIS44_07685 PF00437 Type II/IV secretion system protein LIS44_07690 PF00793 DAHP synthetase I family LIS44_07695 PF00155 Aminotransferase class I and II LIS44_07700 PF08240 Alcohol dehydrogenase GroES-like domain LIS44_07700 PF00107 Zinc-binding dehydrogenase LIS44_07725 PF00106 short chain dehydrogenase LIS44_07740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_07740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_07740 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_07750 PF00565 Staphylococcal nuclease homologue LIS44_07765 PF07690 Major Facilitator Superfamily LIS44_07780 PF10415 Fumarase C C-terminus LIS44_07780 PF00206 Lyase LIS44_07785 PF16363 GDP-mannose 4,6 dehydratase LIS44_07800 PF02635 DsrE/DsrF-like family LIS44_07820 PF03466 LysR substrate binding domain LIS44_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_07825 PF03788 LrgA family LIS44_07835 PF02654 Cobalamin-5-phosphate synthase LIS44_07845 PF02277 Phosphoribosyltransferase LIS44_07850 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LIS44_07895 PF04073 Aminoacyl-tRNA editing domain LIS44_07910 PF00487 Fatty acid desaturase LIS44_07915 PF12852 Cupin LIS44_07915 PF12833 Helix-turn-helix domain LIS44_07920 PF02684 Lipid-A-disaccharide synthetase LIS44_07930 PF00793 DAHP synthetase I family LIS44_07955 PF01266 FAD dependent oxidoreductase LIS44_07965 PF01264 Chorismate synthase LIS44_07970 PF05175 Methyltransferase small domain LIS44_07990 PF03109 ABC1 family LIS44_07995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_07995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_07995 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_08000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_08000 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_08000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_08005 PF00583 Acetyltransferase (GNAT) family LIS44_08010 PF01965 DJ-1/PfpI family LIS44_08020 PF10145 Phage-related minor tail protein LIS44_08020 PF01464 Transglycosylase SLT domain LIS44_08020 PF01551 Peptidase family M23 LIS44_08065 PF02881 SRP54-type protein, helical bundle domain LIS44_08065 PF00448 SRP54-type protein, GTPase domain LIS44_08105 PF00291 Pyridoxal-phosphate dependent enzyme LIS44_08115 PF00004 ATPase family associated with various cellular activities (AAA) LIS44_08115 PF17862 AAA+ lid domain LIS44_08115 PF01434 Peptidase family M41 LIS44_08125 PF05166 YcgL domain LIS44_08130 PF01612 3'-5' exonuclease LIS44_08130 PF00570 HRDC domain LIS44_08135 PF02132 RecR protein LIS44_08135 PF13662 Toprim domain LIS44_08145 PF01053 Cys/Met metabolism PLP-dependent enzyme LIS44_08155 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LIS44_08155 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIS44_08165 PF01230 HIT domain LIS44_08180 PF01654 Cytochrome bd terminal oxidase subunit I LIS44_08190 PF08173 Membrane bound YbgT-like protein LIS44_08205 PF01098 Cell cycle protein LIS44_08210 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LIS44_08215 PF04977 Septum formation initiator LIS44_08220 PF03952 Enolase, N-terminal domain LIS44_08220 PF00113 Enolase, C-terminal TIM barrel domain LIS44_08225 PF00793 DAHP synthetase I family LIS44_08230 PF06418 CTP synthase N-terminus LIS44_08230 PF00117 Glutamine amidotransferase class-I LIS44_08250 PF00285 Citrate synthase, C-terminal domain LIS44_08260 PF00440 Bacterial regulatory proteins, tetR family LIS44_08265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIS44_08265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIS44_08285 PF13817 IS66 C-terminal element LIS44_08285 PF13007 Transposase C of IS166 homeodomain LIS44_08285 PF03050 Transposase IS66 family LIS44_08285 PF13005 zinc-finger binding domain of transposase IS66 LIS44_08300 PF00004 ATPase family associated with various cellular activities (AAA) LIS44_08300 PF07724 AAA domain (Cdc48 subfamily) LIS44_08300 PF17871 AAA lid domain LIS44_08300 PF02861 Clp amino terminal domain, pathogenicity island component LIS44_08300 PF10431 C-terminal, D2-small domain, of ClpB protein LIS44_08305 PF02617 ATP-dependent Clp protease adaptor protein ClpS LIS44_08315 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIS44_08315 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIS44_08330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LIS44_08335 PF00291 Pyridoxal-phosphate dependent enzyme LIS44_08335 PF00585 C-terminal regulatory domain of Threonine dehydratase LIS44_08340 PF02080 TrkA-C domain LIS44_08340 PF02254 TrkA-N domain LIS44_08350 PF02253 Phospholipase A1 LIS44_08355 PF08367 Peptidase M16C associated LIS44_08355 PF00675 Insulinase (Peptidase family M16) LIS44_08355 PF05193 Peptidase M16 inactive domain LIS44_08365 PF00294 pfkB family carbohydrate kinase LIS44_08390 PF09312 SurA N-terminal domain LIS44_08395 PF00216 Bacterial DNA-binding protein LIS44_08410 PF02082 Transcriptional regulator LIS44_08415 PF00266 Aminotransferase class-V LIS44_08420 PF01592 NifU-like N terminal domain LIS44_08425 PF01521 Iron-sulphur cluster biosynthesis LIS44_08430 PF00226 DnaJ domain LIS44_08430 PF07743 HSCB C-terminal oligomerisation domain LIS44_08435 PF00012 Hsp70 protein LIS44_08440 PF00111 2Fe-2S iron-sulfur cluster binding domain LIS44_08445 PF00211 Adenylate and Guanylate cyclase catalytic domain LIS44_08465 PF10415 Fumarase C C-terminus LIS44_08465 PF00206 Lyase LIS44_08475 PF01037 Lrp/AsnC ligand binding domain LIS44_08480 PF00171 Aldehyde dehydrogenase family LIS44_08480 PF01619 Proline dehydrogenase LIS44_08480 PF14850 DNA-binding domain of Proline dehydrogenase LIS44_08480 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LIS44_08485 PF05958 tRNA (Uracil-5-)-methyltransferase LIS44_08530 PF01062 Bestrophin, RFP-TM, chloride channel LIS44_08535 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIS44_08535 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LIS44_08540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIS44_08545 PF00149 Calcineurin-like phosphoesterase LIS44_08550 PF03328 HpcH/HpaI aldolase/citrate lyase family LIS44_08555 PF00881 Nitroreductase family LIS44_08565 PF01116 Fructose-bisphosphate aldolase class-II LIS44_08585 PF02545 Maf-like protein LIS44_08590 PF08007 Cupin superfamily protein LIS44_08595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_08595 PF07730 Histidine kinase LIS44_08595 PF05231 MASE1 LIS44_08600 PF00196 Bacterial regulatory proteins, luxR family LIS44_08600 PF00072 Response regulator receiver domain LIS44_08610 PF03737 Aldolase/RraA LIS44_08620 PF01649 Ribosomal protein S20 LIS44_08630 PF00459 Inositol monophosphatase family LIS44_08635 PF13419 Haloacid dehalogenase-like hydrolase LIS44_08640 PF01479 S4 domain LIS44_08645 PF00154 recA bacterial DNA recombination protein LIS44_08650 PF02631 RecX family LIS44_08665 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LIS44_08665 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_08670 PF07977 FabA-like domain LIS44_08675 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_08675 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LIS44_08685 PF07244 Surface antigen variable number repeat LIS44_08685 PF01103 Surface antigen LIS44_08690 PF02163 Peptidase family M50 LIS44_08690 PF13180 PDZ domain LIS44_08690 PF17820 PDZ domain LIS44_08695 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LIS44_08695 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LIS44_08695 PF13288 DXP reductoisomerase C-terminal domain LIS44_08705 PF01255 Putative undecaprenyl diphosphate synthase LIS44_08710 PF01765 Ribosome recycling factor LIS44_08715 PF00696 Amino acid kinase family LIS44_08720 PF04055 Radical SAM superfamily LIS44_08720 PF00919 Uncharacterized protein family UPF0004 LIS44_08720 PF18693 TRAM domain LIS44_08725 PF00989 PAS fold LIS44_08725 PF00512 His Kinase A (phospho-acceptor) domain LIS44_08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_08730 PF02954 Bacterial regulatory protein, Fis family LIS44_08730 PF00072 Response regulator receiver domain LIS44_08730 PF00158 Sigma-54 interaction domain LIS44_08740 PF07690 Major Facilitator Superfamily LIS44_08745 PF01134 Glucose inhibited division protein A LIS44_08745 PF13932 GidA associated domain LIS44_08770 PF02954 Bacterial regulatory protein, Fis family LIS44_08775 PF01808 AICARFT/IMPCHase bienzyme LIS44_08775 PF02142 MGS-like domain LIS44_08780 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LIS44_08780 PF02843 Phosphoribosylglycinamide synthetase, C domain LIS44_08780 PF02844 Phosphoribosylglycinamide synthetase, N domain LIS44_08790 PF03180 NLPA lipoprotein LIS44_08795 PF00005 ABC transporter LIS44_08795 PF09383 NIL domain LIS44_08800 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_08805 PF01336 OB-fold nucleic acid binding domain LIS44_08805 PF14579 Helix-hairpin-helix motif LIS44_08805 PF02811 PHP domain LIS44_08805 PF07733 Bacterial DNA polymerase III alpha NTPase domain LIS44_08805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LIS44_08810 PF00588 SpoU rRNA Methylase family LIS44_08815 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_08830 PF01624 MutS domain I LIS44_08830 PF05188 MutS domain II LIS44_08830 PF05192 MutS domain III LIS44_08830 PF05190 MutS family domain IV LIS44_08830 PF00488 MutS domain V LIS44_08835 PF11953 Domain of unknown function (DUF3470) LIS44_08835 PF00037 4Fe-4S binding domain LIS44_08845 PF01596 O-methyltransferase LIS44_08850 PF00582 Universal stress protein family LIS44_08870 PF03968 OstA-like protein LIS44_08885 PF01380 SIS domain LIS44_08885 PF00571 CBS domain LIS44_08895 PF09190 DALR domain LIS44_08895 PF01406 tRNA synthetases class I (C) catalytic domain LIS44_08905 PF00582 Universal stress protein family LIS44_08915 PF00005 ABC transporter LIS44_08915 PF03459 TOBE domain LIS44_08920 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_08930 PF00994 Probable molybdopterin binding domain LIS44_08930 PF03454 MoeA C-terminal region (domain IV) LIS44_08930 PF03453 MoeA N-terminal region (domain I and II) LIS44_08935 PF01967 MoaC family LIS44_08935 PF00994 Probable molybdopterin binding domain LIS44_08940 PF02391 MoaE protein LIS44_08950 PF04055 Radical SAM superfamily LIS44_08950 PF06463 Molybdenum Cofactor Synthesis C LIS44_08955 PF12804 MobA-like NTP transferase domain LIS44_08960 PF04324 BFD-like [2Fe-2S] binding domain LIS44_08960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIS44_08960 PF00384 Molybdopterin oxidoreductase LIS44_08960 PF01568 Molydopterin dinucleotide binding domain LIS44_08965 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_08965 PF04324 BFD-like [2Fe-2S] binding domain LIS44_08965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIS44_08965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LIS44_08965 PF18267 Rubredoxin NAD+ reductase C-terminal domain LIS44_08970 PF04324 BFD-like [2Fe-2S] binding domain LIS44_08970 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_08970 PF18267 Rubredoxin NAD+ reductase C-terminal domain LIS44_08970 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIS44_08970 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LIS44_08975 PF07690 Major Facilitator Superfamily LIS44_08985 PF00005 ABC transporter LIS44_08995 PF00465 Iron-containing alcohol dehydrogenase LIS44_09010 PF00171 Aldehyde dehydrogenase family LIS44_09015 PF00117 Glutamine amidotransferase class-I LIS44_09015 PF00958 GMP synthase C terminal domain LIS44_09015 PF02540 NAD synthase LIS44_09020 PF04264 YceI-like domain LIS44_09045 PF08803 Putative mono-oxygenase ydhR LIS44_09060 PF01810 LysE type translocator LIS44_09070 PF02075 Crossover junction endodeoxyribonuclease RuvC LIS44_09080 PF00708 Acylphosphatase LIS44_09085 PF01256 Carbohydrate kinase LIS44_09085 PF03853 YjeF-related protein N-terminus LIS44_09090 PF08331 Domain of unknown function (DUF1730) LIS44_09105 PF00149 Calcineurin-like phosphoesterase LIS44_09120 PF12102 Domain of unknown function (DUF3578) LIS44_09120 PF07728 AAA domain (dynein-related subfamily) LIS44_09165 PF00106 short chain dehydrogenase LIS44_09170 PF08240 Alcohol dehydrogenase GroES-like domain LIS44_09170 PF00107 Zinc-binding dehydrogenase LIS44_09190 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LIS44_09190 PF01348 Type II intron maturase LIS44_09215 PF13356 Arm DNA-binding domain LIS44_09215 PF00589 Phage integrase family LIS44_09245 PF12631 MnmE helical domain LIS44_09245 PF10396 GTP-binding protein TrmE N-terminus LIS44_09245 PF01926 50S ribosome-binding GTPase LIS44_09250 PF00350 Dynamin family LIS44_09260 PF07728 AAA domain (dynein-related subfamily) LIS44_09260 PF17868 AAA lid domain LIS44_09260 PF12592 Protein of unknown function (DUF3763) LIS44_09295 PF13005 zinc-finger binding domain of transposase IS66 LIS44_09295 PF13007 Transposase C of IS166 homeodomain LIS44_09295 PF13817 IS66 C-terminal element LIS44_09295 PF03050 Transposase IS66 family LIS44_09310 PF00589 Phage integrase family LIS44_09310 PF13356 Arm DNA-binding domain LIS44_09325 PF13005 zinc-finger binding domain of transposase IS66 LIS44_09325 PF13007 Transposase C of IS166 homeodomain LIS44_09325 PF13817 IS66 C-terminal element LIS44_09325 PF03050 Transposase IS66 family LIS44_09330 PF00589 Phage integrase family LIS44_09330 PF13356 Arm DNA-binding domain LIS44_09340 PF10431 C-terminal, D2-small domain, of ClpB protein LIS44_09340 PF02861 Clp amino terminal domain, pathogenicity island component LIS44_09340 PF17871 AAA lid domain LIS44_09340 PF07724 AAA domain (Cdc48 subfamily) LIS44_09340 PF00004 ATPase family associated with various cellular activities (AAA) LIS44_09405 PF18766 SWI2/SNF2 ATPase LIS44_09405 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LIS44_09405 PF11867 Domain of unknown function (DUF3387) LIS44_09415 PF02384 N-6 DNA Methylase LIS44_09455 PF08241 Methyltransferase domain LIS44_09485 PF14659 Phage integrase, N-terminal SAM-like domain LIS44_09485 PF00589 Phage integrase family LIS44_09525 PF01709 Transcriptional regulator LIS44_09540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LIS44_09540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_09550 PF00296 Luciferase-like monooxygenase LIS44_09555 PF03180 NLPA lipoprotein LIS44_09565 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_09570 PF06071 Protein of unknown function (DUF933) LIS44_09570 PF01926 50S ribosome-binding GTPase LIS44_09595 PF03591 AzlC protein LIS44_09600 PF05437 Branched-chain amino acid transport protein (AzlD) LIS44_09605 PF02222 ATP-grasp domain LIS44_09610 PF08335 GlnD PII-uridylyltransferase LIS44_09610 PF01909 Nucleotidyltransferase domain LIS44_09610 PF01966 HD domain LIS44_09615 PF00155 Aminotransferase class I and II LIS44_09620 PF00255 Glutathione peroxidase LIS44_09625 PF01641 SelR domain LIS44_09630 PF00155 Aminotransferase class I and II LIS44_09635 PF01757 Acyltransferase family LIS44_09655 PF00180 Isocitrate/isopropylmalate dehydrogenase LIS44_09660 PF00849 RNA pseudouridylate synthase LIS44_09670 PF07943 Penicillin-binding protein 5, C-terminal domain LIS44_09670 PF00768 D-alanyl-D-alanine carboxypeptidase LIS44_09675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIS44_09680 PF00027 Cyclic nucleotide-binding domain LIS44_09680 PF13545 Crp-like helix-turn-helix domain LIS44_09690 PF14760 Rnk N-terminus LIS44_09690 PF01272 Transcription elongation factor, GreA/GreB, C-term LIS44_09695 PF00464 Serine hydroxymethyltransferase LIS44_09730 PF01925 Sulfite exporter TauE/SafE LIS44_09735 PF01613 Flavin reductase like domain LIS44_09740 PF08267 Cobalamin-independent synthase, N-terminal domain LIS44_09740 PF01717 Cobalamin-independent synthase, Catalytic domain LIS44_09755 PF06100 MCRA family LIS44_09765 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LIS44_09765 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_09765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_09770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIS44_09770 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LIS44_09775 PF00296 Luciferase-like monooxygenase LIS44_09820 PF02661 Fic/DOC family LIS44_09820 PF13784 Fic/DOC family N-terminal LIS44_09905 PF00005 ABC transporter LIS44_09910 PF01061 ABC-2 type transporter LIS44_09915 PF14489 QueF-like protein LIS44_09915 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LIS44_09925 PF13406 Transglycosylase SLT domain LIS44_09930 PF03330 Lytic transglycolase LIS44_09930 PF05036 Sporulation related domain LIS44_09945 PF00889 Elongation factor TS LIS44_09950 PF00318 Ribosomal protein S2 LIS44_09955 PF00557 Metallopeptidase family M24 LIS44_09965 PF00155 Aminotransferase class I and II LIS44_09970 PF00892 EamA-like transporter family LIS44_09980 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LIS44_09980 PF01348 Type II intron maturase LIS44_10005 PF13180 PDZ domain LIS44_10010 PF01784 NIF3 (NGG1p interacting factor 3) LIS44_10015 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LIS44_10015 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LIS44_10080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_10080 PF03466 LysR substrate binding domain LIS44_10085 PF01040 UbiA prenyltransferase family LIS44_10090 PF04345 Chorismate lyase LIS44_10100 PF03951 Glutamine synthetase, beta-Grasp domain LIS44_10100 PF00120 Glutamine synthetase, catalytic domain LIS44_10105 PF00117 Glutamine amidotransferase class-I LIS44_10110 PF02885 Glycosyl transferase family, helical bundle domain LIS44_10110 PF00591 Glycosyl transferase family, a/b domain LIS44_10115 PF00218 Indole-3-glycerol phosphate synthase LIS44_10125 PF01227 GTP cyclohydrolase I LIS44_10150 PF05675 Protein of unknown function (DUF817) LIS44_10155 PF01208 Uroporphyrinogen decarboxylase (URO-D) LIS44_10165 PF02678 Pirin LIS44_10165 PF17954 Quercetinase C-terminal cupin domain LIS44_10180 PF03466 LysR substrate binding domain LIS44_10180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_10210 PF13358 DDE superfamily endonuclease LIS44_10230 PF02322 Cytochrome bd terminal oxidase subunit II LIS44_10235 PF01654 Cytochrome bd terminal oxidase subunit I LIS44_10275 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_10275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIS44_10280 PF01565 FAD binding domain LIS44_10280 PF09330 D-lactate dehydrogenase, membrane binding LIS44_10285 PF01070 FMN-dependent dehydrogenase LIS44_10290 PF07729 FCD domain LIS44_10290 PF00392 Bacterial regulatory proteins, gntR family LIS44_10295 PF02652 L-lactate permease LIS44_10300 PF00764 Arginosuccinate synthase LIS44_10305 PF01590 GAF domain LIS44_10305 PF00990 Diguanylate cyclase, GGDEF domain LIS44_10305 PF00360 Phytochrome region LIS44_10305 PF00563 EAL domain LIS44_10315 PF00929 Exonuclease LIS44_10330 PF00324 Amino acid permease LIS44_10350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIS44_10350 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_10355 PF00005 ABC transporter LIS44_10355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIS44_10360 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_10360 PF12911 N-terminal TM domain of oligopeptide transport permease C LIS44_10365 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_10370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIS44_10375 PF01476 LysM domain LIS44_10375 PF01464 Transglycosylase SLT domain LIS44_10380 PF00929 Exonuclease LIS44_10390 PF09297 NADH pyrophosphatase zinc ribbon domain LIS44_10390 PF00293 NUDIX domain LIS44_10400 PF04972 BON domain LIS44_10405 PF02021 Uncharacterised protein family UPF0102 LIS44_10415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIS44_10425 PF01494 FAD binding domain LIS44_10430 PF01494 FAD binding domain LIS44_10435 PF04070 Domain of unknown function (DUF378) LIS44_10445 PF03695 Uncharacterised protein family (UPF0149) LIS44_10470 PF13411 MerR HTH family regulatory protein LIS44_10475 PF01812 5-formyltetrahydrofolate cyclo-ligase family LIS44_10480 PF00004 ATPase family associated with various cellular activities (AAA) LIS44_10480 PF05362 Lon protease (S16) C-terminal proteolytic domain LIS44_10480 PF02190 ATP-dependent protease La (LON) substrate-binding domain LIS44_10490 PF02590 Predicted SPOUT methyltransferase LIS44_10495 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LIS44_10510 PF04060 Putative Fe-S cluster LIS44_10515 PF10576 Iron-sulfur binding domain of endonuclease III LIS44_10515 PF00633 Helix-hairpin-helix motif LIS44_10515 PF00730 HhH-GPD superfamily base excision DNA repair protein LIS44_10525 PF05191 Adenylate kinase, active site lid LIS44_10540 PF00905 Penicillin binding protein transpeptidase domain LIS44_10540 PF03717 Penicillin-binding Protein dimerisation domain LIS44_10620 PF01389 OmpA-like transmembrane domain LIS44_10620 PF00691 OmpA family LIS44_10635 PF13533 Biotin-lipoyl like LIS44_10640 PF03412 Peptidase C39 family LIS44_10640 PF00664 ABC transporter transmembrane region LIS44_10640 PF00005 ABC transporter LIS44_10645 PF02321 Outer membrane efflux protein LIS44_10650 PF03895 YadA-like membrane anchor domain LIS44_10650 PF05658 Head domain of trimeric autotransporter adhesin LIS44_10650 PF05662 Coiled stalk of trimeric autotransporter adhesin LIS44_10650 PF13018 Extended Signal Peptide of Type V secretion system LIS44_10665 PF00118 TCP-1/cpn60 chaperonin family LIS44_10670 PF00166 Chaperonin 10 Kd subunit LIS44_10680 PF00781 Diacylglycerol kinase catalytic domain LIS44_10710 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LIS44_10710 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LIS44_10735 PF14765 Polyketide synthase dehydratase LIS44_10735 PF00550 Phosphopantetheine attachment site LIS44_10735 PF00698 Acyl transferase domain LIS44_10735 PF08240 Alcohol dehydrogenase GroES-like domain LIS44_10735 PF08659 KR domain LIS44_10745 PF00085 Thioredoxin LIS44_10765 PF03551 Transcriptional regulator PadR-like family LIS44_10775 PF01661 Macro domain LIS44_10780 PF00009 Elongation factor Tu GTP binding domain LIS44_10785 PF01507 Phosphoadenosine phosphosulfate reductase family LIS44_10800 PF14883 Hypothetical glycosyl hydrolase family 13 LIS44_10800 PF01522 Polysaccharide deacetylase LIS44_10810 PF00535 Glycosyl transferase family 2 LIS44_10815 PF01522 Polysaccharide deacetylase LIS44_10815 PF14883 Hypothetical glycosyl hydrolase family 13 LIS44_10825 PF01385 Probable transposase LIS44_10825 PF12323 Helix-turn-helix domain LIS44_10825 PF07282 Putative transposase DNA-binding domain LIS44_10830 PF00549 CoA-ligase LIS44_10830 PF02629 CoA binding domain LIS44_10835 PF00549 CoA-ligase LIS44_10835 PF08442 ATP-grasp domain LIS44_10840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIS44_10840 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_10845 PF00364 Biotin-requiring enzyme LIS44_10845 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIS44_10845 PF02817 e3 binding domain LIS44_10850 PF16870 2-oxoglutarate dehydrogenase C-terminal LIS44_10850 PF16078 2-oxoglutarate dehydrogenase N-terminus LIS44_10850 PF02779 Transketolase, pyrimidine binding domain LIS44_10850 PF00676 Dehydrogenase E1 component LIS44_10855 PF13085 2Fe-2S iron-sulfur cluster binding domain LIS44_10860 PF00890 FAD binding domain LIS44_10860 PF02910 Fumarate reductase flavoprotein C-term LIS44_10865 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LIS44_10870 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LIS44_10875 PF00285 Citrate synthase, C-terminal domain LIS44_10885 PF13296 Putative type VI secretion system Rhs element Vgr LIS44_10885 PF04717 Type VI secretion system, phage-baseplate injector LIS44_10885 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LIS44_10890 PF02540 NAD synthase LIS44_10890 PF00795 Carbon-nitrogen hydrolase LIS44_10920 PF00037 4Fe-4S binding domain LIS44_10925 PF01467 Cytidylyltransferase-like LIS44_10930 PF01668 SmpB protein LIS44_10935 PF03358 NADPH-dependent FMN reductase LIS44_10940 PF02578 Multi-copper polyphenol oxidoreductase laccase LIS44_10945 PF01479 S4 domain LIS44_10945 PF00849 RNA pseudouridylate synthase LIS44_10950 PF13525 Outer membrane lipoprotein LIS44_10955 PF10410 DnaB-helicase binding domain of primase LIS44_10955 PF01807 CHC2 zinc finger LIS44_10955 PF08275 DNA primase catalytic core, N-terminal domain LIS44_10955 PF08278 DNA primase DnaG DnaB-binding LIS44_10960 PF01488 Shikimate / quinate 5-dehydrogenase LIS44_10960 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LIS44_10960 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LIS44_10970 PF03550 Outer membrane lipoprotein LolB LIS44_10975 PF00288 GHMP kinases N terminal domain LIS44_10975 PF08544 GHMP kinases C terminal LIS44_11000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LIS44_11000 PF14572 Phosphoribosyl synthetase-associated domain LIS44_11005 PF01386 Ribosomal L25p family LIS44_11010 PF01195 Peptidyl-tRNA hydrolase LIS44_11015 PF02261 Aspartate decarboxylase LIS44_11020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LIS44_11030 PF00581 Rhodanese-like domain LIS44_11030 PF17773 UPF0176 acylphosphatase like domain LIS44_11040 PF09335 SNARE associated Golgi protein LIS44_11060 PF04545 Sigma-70, region 4 LIS44_11060 PF04546 Sigma-70, non-essential region LIS44_11060 PF03979 Sigma-70 factor, region 1.1 LIS44_11060 PF00140 Sigma-70 factor, region 1.2 LIS44_11060 PF04542 Sigma-70 region 2 LIS44_11060 PF04539 Sigma-70 region 3 LIS44_11070 PF03099 Biotin/lipoate A/B protein ligase family LIS44_11080 PF00465 Iron-containing alcohol dehydrogenase LIS44_11085 PF13520 Amino acid permease LIS44_11090 PF00588 SpoU rRNA Methylase family LIS44_11095 PF10414 Sirohaem synthase dimerisation region LIS44_11095 PF14824 Sirohaem biosynthesis protein central LIS44_11095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIS44_11100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIS44_11100 PF02403 Seryl-tRNA synthetase N-terminal domain LIS44_11110 PF03548 Outer membrane lipoprotein carrier protein LolA LIS44_11115 PF01016 Ribosomal L27 protein LIS44_11120 PF00829 Ribosomal prokaryotic L21 protein LIS44_11125 PF00348 Polyprenyl synthetase LIS44_11150 PF02321 Outer membrane efflux protein LIS44_11155 PF01906 Putative heavy-metal-binding LIS44_11160 PF01906 Putative heavy-metal-binding LIS44_11175 PF08264 Anticodon-binding domain of tRNA LIS44_11175 PF00133 tRNA synthetases class I (I, L, M and V) LIS44_11175 PF10458 Valyl tRNA synthetase tRNA binding arm LIS44_11185 PF04480 Protein of unknown function (DUF559) LIS44_11190 PF00872 Transposase, Mutator family LIS44_11200 PF04239 Protein of unknown function (DUF421) LIS44_11210 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_11215 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_11220 PF00005 ABC transporter LIS44_11225 PF00909 Ammonium Transporter Family LIS44_11230 PF13419 Haloacid dehalogenase-like hydrolase LIS44_11240 PF00512 His Kinase A (phospho-acceptor) domain LIS44_11240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_11240 PF08521 Two-component sensor kinase N-terminal LIS44_11245 PF00486 Transcriptional regulatory protein, C terminal LIS44_11245 PF00072 Response regulator receiver domain LIS44_11250 PF00884 Sulfatase LIS44_11250 PF08019 Phosphoethanolamine transferase EptA/EptB LIS44_11270 PF01734 Patatin-like phospholipase LIS44_11280 PF01145 SPFH domain / Band 7 family LIS44_11285 PF00474 Sodium:solute symporter family LIS44_11290 PF00348 Polyprenyl synthetase LIS44_11295 PF04303 PrpF protein LIS44_11300 PF00324 Amino acid permease LIS44_11325 PF01507 Phosphoadenosine phosphosulfate reductase family LIS44_11330 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LIS44_11330 PF06974 Protein of unknown function (DUF1298) LIS44_11340 PF10150 Ribonuclease E/G family LIS44_11340 PF00575 S1 RNA binding domain LIS44_11345 PF02545 Maf-like protein LIS44_11365 PF02686 Glu-tRNAGln amidotransferase C subunit LIS44_11370 PF01425 Amidase LIS44_11375 PF02934 GatB/GatE catalytic domain LIS44_11375 PF02637 GatB domain LIS44_11415 PF05992 SbmA/BacA-like family LIS44_11450 PF00990 Diguanylate cyclase, GGDEF domain LIS44_11450 PF01590 GAF domain LIS44_11450 PF00563 EAL domain LIS44_11450 PF00360 Phytochrome region LIS44_11460 PF00149 Calcineurin-like phosphoesterase LIS44_11460 PF12320 Type 5 capsule protein repressor C-terminal domain LIS44_11475 PF01168 Alanine racemase, N-terminal domain LIS44_11480 PF00437 Type II/IV secretion system protein LIS44_11485 PF00437 Type II/IV secretion system protein LIS44_11490 PF01475 Ferric uptake regulator family LIS44_11495 PF04355 SmpA / OmlA family LIS44_11500 PF03658 RnfH family Ubiquitin LIS44_11510 PF01814 Hemerythrin HHE cation binding domain LIS44_11515 PF13230 Glutamine amidotransferases class-II LIS44_11520 PF00696 Amino acid kinase family LIS44_11525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIS44_11525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIS44_11525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIS44_11525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIS44_11530 PF00692 dUTPase LIS44_11540 PF13488 Glycine zipper LIS44_11540 PF00691 OmpA family LIS44_11545 PF01553 Acyltransferase LIS44_11555 PF03775 Septum formation inhibitor MinC, C-terminal domain LIS44_11560 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LIS44_11580 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LIS44_11580 PF17854 FtsK alpha domain LIS44_11580 PF01580 FtsK/SpoIIIE family LIS44_11580 PF09397 Ftsk gamma domain LIS44_11585 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_11590 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LIS44_11595 PF04377 Arginine-tRNA-protein transferase, C terminus LIS44_11595 PF04376 Arginine-tRNA-protein transferase, N terminus LIS44_11600 PF00583 Acetyltransferase (GNAT) family LIS44_11615 PF03144 Elongation factor Tu domain 2 LIS44_11615 PF00009 Elongation factor Tu GTP binding domain LIS44_11615 PF03143 Elongation factor Tu C-terminal domain LIS44_11625 PF00177 Ribosomal protein S7p/S5e LIS44_11630 PF00164 Ribosomal protein S12/S23 LIS44_11640 PF02801 Beta-ketoacyl synthase, C-terminal domain LIS44_11640 PF00109 Beta-ketoacyl synthase, N-terminal domain LIS44_11645 PF03653 Uncharacterised protein family (UPF0093) LIS44_11650 PF00324 Amino acid permease LIS44_11655 PF01042 Endoribonuclease L-PSP LIS44_11660 PF00842 Alanine racemase, C-terminal domain LIS44_11660 PF01168 Alanine racemase, N-terminal domain LIS44_11665 PF01266 FAD dependent oxidoreductase LIS44_11670 PF01037 Lrp/AsnC ligand binding domain LIS44_11675 PF13419 Haloacid dehalogenase-like hydrolase LIS44_11680 PF02581 Thiamine monophosphate synthase LIS44_11680 PF03070 TENA/THI-4/PQQC family LIS44_11680 PF08543 Phosphomethylpyrimidine kinase LIS44_11685 PF07411 Domain of unknown function (DUF1508) LIS44_11695 PF03831 PhnA domain LIS44_11695 PF08274 PhnA Zinc-Ribbon LIS44_11700 PF04343 Protein of unknown function, DUF488 LIS44_11710 PF00199 Catalase LIS44_11725 PF00849 RNA pseudouridylate synthase LIS44_11780 PF00694 Aconitase C-terminal domain LIS44_11780 PF00330 Aconitase family (aconitate hydratase) LIS44_11805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIS44_11815 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LIS44_11815 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LIS44_11815 PF06827 Zinc finger found in FPG and IleRS LIS44_11825 PF01741 Large-conductance mechanosensitive channel, MscL LIS44_11830 PF03144 Elongation factor Tu domain 2 LIS44_11830 PF00679 Elongation factor G C-terminus LIS44_11830 PF00009 Elongation factor Tu GTP binding domain LIS44_11835 PF00860 Permease family LIS44_11840 PF08468 Methyltransferase small domain N-terminal LIS44_11840 PF05175 Methyltransferase small domain LIS44_11845 PF00324 Amino acid permease LIS44_11850 PF00561 alpha/beta hydrolase fold LIS44_11860 PF07963 Prokaryotic N-terminal methylation motif LIS44_11860 PF00114 Pilin (bacterial filament) LIS44_11865 PF00108 Thiolase, N-terminal domain LIS44_11865 PF02803 Thiolase, C-terminal domain LIS44_11880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LIS44_11880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIS44_11885 PF01011 PQQ enzyme repeat LIS44_11890 PF04966 Carbohydrate-selective porin, OprB family LIS44_11895 PF02515 CoA-transferase family III LIS44_11900 PF12833 Helix-turn-helix domain LIS44_11900 PF02311 AraC-like ligand binding domain LIS44_11905 PF02803 Thiolase, C-terminal domain LIS44_11905 PF00108 Thiolase, N-terminal domain LIS44_11910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIS44_11910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIS44_11910 PF00378 Enoyl-CoA hydratase/isomerase LIS44_11930 PF03006 Haemolysin-III related LIS44_11935 PF07690 Major Facilitator Superfamily LIS44_11935 PF00083 Sugar (and other) transporter LIS44_11945 PF00149 Calcineurin-like phosphoesterase LIS44_11950 PF13091 PLD-like domain LIS44_11960 PF16360 GTP-binding GTPase Middle Region LIS44_11960 PF13167 GTP-binding GTPase N-terminal LIS44_11960 PF01926 50S ribosome-binding GTPase LIS44_11995 PF00149 Calcineurin-like phosphoesterase LIS44_12000 PF00398 Ribosomal RNA adenine dimethylase LIS44_12005 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LIS44_12010 PF00572 Ribosomal protein L13 LIS44_12015 PF00380 Ribosomal protein S9/S16 LIS44_12020 PF00043 Glutathione S-transferase, C-terminal domain LIS44_12020 PF02798 Glutathione S-transferase, N-terminal domain LIS44_12025 PF04386 Stringent starvation protein B LIS44_12060 PF04333 MlaA lipoprotein LIS44_12075 PF00795 Carbon-nitrogen hydrolase LIS44_12080 PF00437 Type II/IV secretion system protein LIS44_12100 PF01612 3'-5' exonuclease LIS44_12100 PF01367 5'-3' exonuclease, C-terminal SAM fold LIS44_12100 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LIS44_12100 PF00476 DNA polymerase family A LIS44_12110 PF02325 YGGT family LIS44_12115 PF14748 Pyrroline-5-carboxylate reductase dimerisation LIS44_12115 PF03807 NADP oxidoreductase coenzyme F420-dependent LIS44_12120 PF11734 TilS substrate C-terminal domain LIS44_12120 PF09179 TilS substrate binding domain LIS44_12120 PF01171 PP-loop family LIS44_12125 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LIS44_12130 PF02541 Ppx/GppA phosphatase family LIS44_12135 PF00085 Thioredoxin LIS44_12140 PF07498 Rho termination factor, N-terminal domain LIS44_12140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIS44_12140 PF07497 Rho termination factor, RNA-binding domain LIS44_12150 PF00216 Bacterial DNA-binding protein LIS44_12155 PF03483 B3/4 domain LIS44_12155 PF03484 tRNA synthetase B5 domain LIS44_12155 PF03147 Ferredoxin-fold anticodon binding domain LIS44_12155 PF01588 Putative tRNA binding domain LIS44_12155 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LIS44_12160 PF01409 tRNA synthetases class II core domain (F) LIS44_12160 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LIS44_12170 PF00899 ThiF family LIS44_12175 PF00929 Exonuclease LIS44_12180 PF03193 RsgA GTPase LIS44_12190 PF00462 Glutaredoxin LIS44_12195 PF02556 Preprotein translocase subunit SecB LIS44_12210 PF01026 TatD related DNase LIS44_12225 PF16658 Class II release factor RF3, C-terminal domain LIS44_12225 PF03144 Elongation factor Tu domain 2 LIS44_12225 PF00009 Elongation factor Tu GTP binding domain LIS44_12230 PF01389 OmpA-like transmembrane domain LIS44_12230 PF00691 OmpA family LIS44_12235 PF03212 Pertactin LIS44_12235 PF13018 Extended Signal Peptide of Type V secretion system LIS44_12235 PF03797 Autotransporter beta-domain LIS44_12235 PF16168 Adhesin of bacterial autotransporter system, probable stalk LIS44_12240 PF00990 Diguanylate cyclase, GGDEF domain LIS44_12240 PF00563 EAL domain LIS44_12240 PF03707 Bacterial signalling protein N terminal repeat LIS44_12245 PF00595 PDZ domain LIS44_12245 PF03572 Peptidase family S41 LIS44_12245 PF17804 Tail specific protease N-terminal domain LIS44_12245 PF11818 C-terminal domain of tail specific protease (DUF3340) LIS44_12250 PF00933 Glycosyl hydrolase family 3 N terminal domain LIS44_12265 PF00171 Aldehyde dehydrogenase family LIS44_12275 PF00871 Acetokinase family LIS44_12280 PF07085 DRTGG domain LIS44_12280 PF01515 Phosphate acetyl/butaryl transferase LIS44_12285 PF13649 Methyltransferase domain LIS44_12290 PF05681 Fumarate hydratase (Fumerase) LIS44_12290 PF05683 Fumarase C-terminus LIS44_12300 PF07724 AAA domain (Cdc48 subfamily) LIS44_12300 PF10431 C-terminal, D2-small domain, of ClpB protein LIS44_12300 PF06689 ClpX C4-type zinc finger LIS44_12305 PF00574 Clp protease LIS44_12310 PF05698 Bacterial trigger factor protein (TF) C-terminus LIS44_12310 PF05697 Bacterial trigger factor protein (TF) LIS44_12310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIS44_12315 PF07715 TonB-dependent Receptor Plug Domain LIS44_12315 PF00593 TonB dependent receptor LIS44_12320 PF13640 2OG-Fe(II) oxygenase superfamily LIS44_12320 PF18331 PKHD-type hydroxylase C-terminal domain LIS44_12325 PF07715 TonB-dependent Receptor Plug Domain LIS44_12325 PF00593 TonB dependent receptor LIS44_12330 PF13640 2OG-Fe(II) oxygenase superfamily LIS44_12330 PF18331 PKHD-type hydroxylase C-terminal domain LIS44_12335 PF01070 FMN-dependent dehydrogenase LIS44_12340 PF00682 HMGL-like LIS44_12340 PF08502 LeuA allosteric (dimerisation) domain LIS44_12345 PF00561 alpha/beta hydrolase fold LIS44_12350 PF00561 alpha/beta hydrolase fold LIS44_12350 PF07021 Methionine biosynthesis protein MetW LIS44_12360 PF01725 Ham1 family LIS44_12370 PF02416 mttA/Hcf106 family LIS44_12375 PF02416 mttA/Hcf106 family LIS44_12380 PF00902 Sec-independent protein translocase protein (TatC) LIS44_12395 PF01790 Prolipoprotein diacylglyceryl transferase LIS44_12410 PF00453 Ribosomal protein L20 LIS44_12415 PF01632 Ribosomal protein L35 LIS44_12420 PF07690 Major Facilitator Superfamily LIS44_12430 PF09335 SNARE associated Golgi protein LIS44_12440 PF00043 Glutathione S-transferase, C-terminal domain LIS44_12440 PF02798 Glutathione S-transferase, N-terminal domain LIS44_12445 PF00011 Hsp20/alpha crystallin family LIS44_12450 PF00707 Translation initiation factor IF-3, C-terminal domain LIS44_12450 PF05198 Translation initiation factor IF-3, N-terminal domain LIS44_12455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIS44_12455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIS44_12455 PF03129 Anticodon binding domain LIS44_12455 PF02824 TGS domain LIS44_12460 PF00501 AMP-binding enzyme LIS44_12460 PF13193 AMP-binding enzyme C-terminal domain LIS44_12465 PF04751 Protein of unknown function (DUF615) LIS44_12470 PF00381 PTS HPr component phosphorylation site LIS44_12475 PF03668 P-loop ATPase protein family LIS44_12480 PF02569 Pantoate-beta-alanine ligase LIS44_12485 PF02548 Ketopantoate hydroxymethyltransferase LIS44_12490 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LIS44_12495 PF01743 Poly A polymerase head domain LIS44_12495 PF12626 Polymerase A arginine-rich C-terminus LIS44_12495 PF12627 Probable RNA and SrmB- binding site of polymerase A LIS44_12505 PF03819 MazG nucleotide pyrophosphohydrolase domain LIS44_12520 PF01926 50S ribosome-binding GTPase LIS44_12520 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LIS44_12525 PF01011 PQQ enzyme repeat LIS44_12525 PF13360 PQQ-like domain LIS44_12535 PF03129 Anticodon binding domain LIS44_12535 PF13393 Histidyl-tRNA synthetase LIS44_12540 PF04551 GcpE protein LIS44_12545 PF13464 Domain of unknown function (DUF4115) LIS44_12560 PF00334 Nucleoside diphosphate kinase LIS44_12565 PF04384 Iron-sulphur cluster assembly LIS44_12570 PF01569 PAP2 superfamily LIS44_12610 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LIS44_12610 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LIS44_12615 PF10369 Small subunit of acetolactate synthase LIS44_12620 PF00205 Thiamine pyrophosphate enzyme, central domain LIS44_12620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIS44_12620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIS44_12630 PF08264 Anticodon-binding domain of tRNA LIS44_12630 PF00133 tRNA synthetases class I (I, L, M and V) LIS44_12630 PF13603 Leucyl-tRNA synthetase, Domain 2 LIS44_12630 PF09334 tRNA synthetases class I (M) LIS44_12645 PF01814 Hemerythrin HHE cation binding domain LIS44_12650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIS44_12655 PF02687 FtsX-like permease family LIS44_12655 PF12704 MacB-like periplasmic core domain LIS44_12655 PF00005 ABC transporter LIS44_12660 PF02321 Outer membrane efflux protein LIS44_12670 PF00303 Thymidylate synthase LIS44_12675 PF00186 Dihydrofolate reductase LIS44_12690 PF01625 Peptide methionine sulfoxide reductase LIS44_12700 PF01618 MotA/TolQ/ExbB proton channel family LIS44_12710 PF01842 ACT domain LIS44_12710 PF00551 Formyl transferase LIS44_12715 PF00440 Bacterial regulatory proteins, tetR family LIS44_12715 PF08360 QacR-like protein, C-terminal region LIS44_12720 PF00171 Aldehyde dehydrogenase family LIS44_12725 PF00830 Ribosomal L28 family LIS44_12730 PF00471 Ribosomal protein L33 LIS44_12735 PF02254 TrkA-N domain LIS44_12735 PF00999 Sodium/hydrogen exchanger family LIS44_12755 PF00580 UvrD/REP helicase N-terminal domain LIS44_12755 PF13361 UvrD-like helicase C-terminal domain LIS44_12760 PF02595 Glycerate kinase family LIS44_12800 PF04102 SlyX LIS44_12805 PF00005 ABC transporter LIS44_12805 PF16326 ABC transporter C-terminal domain LIS44_12805 PF12848 ABC transporter LIS44_12810 PF03279 Bacterial lipid A biosynthesis acyltransferase LIS44_12830 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIS44_12830 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIS44_12845 PF00710 Asparaginase, N-terminal LIS44_12845 PF17763 Glutaminase/Asparaginase C-terminal domain LIS44_12850 PF01416 tRNA pseudouridine synthase LIS44_12860 PF01176 Translation initiation factor 1A / IF-1 LIS44_12870 PF00180 Isocitrate/isopropylmalate dehydrogenase LIS44_12880 PF00694 Aconitase C-terminal domain LIS44_12885 PF00330 Aconitase family (aconitate hydratase) LIS44_12920 PF00293 NUDIX domain LIS44_12925 PF02896 PEP-utilising enzyme, TIM barrel domain LIS44_12925 PF00391 PEP-utilising enzyme, mobile domain LIS44_12925 PF05524 PEP-utilising enzyme, N-terminal LIS44_12925 PF01590 GAF domain LIS44_12935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIS44_12935 PF02770 Acyl-CoA dehydrogenase, middle domain LIS44_12935 PF18158 Adaptive response protein AidB N-terminal domain LIS44_12955 PF00141 Peroxidase LIS44_12965 PF12706 Beta-lactamase superfamily domain LIS44_12970 PF01545 Cation efflux family LIS44_12970 PF16916 Dimerisation domain of Zinc Transporter LIS44_12980 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_12980 PF14759 Reductase C-terminal LIS44_12985 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LIS44_12990 PF00106 short chain dehydrogenase LIS44_12995 PF00355 Rieske [2Fe-2S] domain LIS44_13000 PF00866 Ring hydroxylating beta subunit LIS44_13005 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LIS44_13005 PF00355 Rieske [2Fe-2S] domain LIS44_13010 PF03466 LysR substrate binding domain LIS44_13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_13020 PF00561 alpha/beta hydrolase fold LIS44_13025 PF03573 outer membrane porin, OprD family LIS44_13030 PF00682 HMGL-like LIS44_13030 PF07836 DmpG-like communication domain LIS44_13035 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIS44_13035 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation LIS44_13040 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIS44_13050 PF13419 Haloacid dehalogenase-like hydrolase LIS44_13055 PF00849 RNA pseudouridylate synthase LIS44_13055 PF01479 S4 domain LIS44_13065 PF00501 AMP-binding enzyme LIS44_13065 PF13193 AMP-binding enzyme C-terminal domain LIS44_13095 PF04024 PspC domain LIS44_13100 PF00571 CBS domain LIS44_13105 PF02091 Glycyl-tRNA synthetase alpha subunit LIS44_13110 PF05746 DALR anticodon binding domain LIS44_13110 PF02092 Glycyl-tRNA synthetase beta subunit LIS44_13165 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LIS44_13165 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_13175 PF03884 DNA gyrase inhibitor YacG LIS44_13185 PF00753 Metallo-beta-lactamase superfamily LIS44_13190 PF00762 Ferrochelatase LIS44_13200 PF01177 Asp/Glu/Hydantoin racemase LIS44_13215 PF01206 Sulfurtransferase TusA LIS44_13220 PF00571 CBS domain LIS44_13220 PF03471 Transporter associated domain LIS44_13225 PF00795 Carbon-nitrogen hydrolase LIS44_13235 PF07963 Prokaryotic N-terminal methylation motif LIS44_13235 PF08334 Type II secretion system (T2SS), protein G LIS44_13240 PF00482 Type II secretion system (T2SS), protein F LIS44_13250 PF02254 TrkA-N domain LIS44_13250 PF00999 Sodium/hydrogen exchanger family LIS44_13255 PF01430 Hsp33 protein LIS44_13270 PF01556 DnaJ C terminal domain LIS44_13270 PF00226 DnaJ domain LIS44_13285 PF01544 CorA-like Mg2+ transporter protein LIS44_13290 PF00013 KH domain LIS44_13290 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LIS44_13290 PF01138 3' exoribonuclease family, domain 1 LIS44_13290 PF03725 3' exoribonuclease family, domain 2 LIS44_13290 PF00575 S1 RNA binding domain LIS44_13295 PF00312 Ribosomal protein S15 LIS44_13300 PF13538 UvrD-like helicase C-terminal domain LIS44_13305 PF12705 PD-(D/E)XK nuclease superfamily LIS44_13305 PF00580 UvrD/REP helicase N-terminal domain LIS44_13305 PF13361 UvrD-like helicase C-terminal domain LIS44_13320 PF03976 Polyphosphate kinase 2 (PPK2) LIS44_13330 PF01209 ubiE/COQ5 methyltransferase family LIS44_13340 PF03109 ABC1 family LIS44_13370 PF01502 Phosphoribosyl-AMP cyclohydrolase LIS44_13390 PF00361 Proton-conducting membrane transporter LIS44_13390 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIS44_13390 PF13244 Domain of unknown function (DUF4040) LIS44_13390 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LIS44_13395 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LIS44_13410 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LIS44_13415 PF03334 Na+/H+ antiporter subunit LIS44_13420 PF02033 Ribosome-binding factor A LIS44_13425 PF00009 Elongation factor Tu GTP binding domain LIS44_13425 PF11987 Translation-initiation factor 2 LIS44_13425 PF08364 Bacterial translation initiation factor IF-2 associated region LIS44_13425 PF04760 Translation initiation factor IF-2, N-terminal region LIS44_13430 PF13184 NusA-like KH domain LIS44_13430 PF08529 NusA N-terminal domain LIS44_13430 PF00575 S1 RNA binding domain LIS44_13435 PF02576 RimP N-terminal domain LIS44_13435 PF17384 RimP C-terminal SH3 domain LIS44_13460 PF03840 Preprotein translocase SecG subunit LIS44_13465 PF00121 Triosephosphate isomerase LIS44_13470 PF00437 Type II/IV secretion system protein LIS44_13470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LIS44_13475 PF00482 Type II secretion system (T2SS), protein F LIS44_13480 PF06750 Bacterial Peptidase A24 N-terminal domain LIS44_13480 PF01478 Type IV leader peptidase family LIS44_13485 PF01121 Dephospho-CoA kinase LIS44_13495 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIS44_13495 PF00588 SpoU rRNA Methylase family LIS44_13500 PF06865 Pyrimidine/purine nucleoside phosphorylase LIS44_13505 PF02463 RecF/RecN/SMC N terminal domain LIS44_13510 PF02622 Uncharacterized ACR, COG1678 LIS44_13515 PF03652 Holliday junction resolvase LIS44_13520 PF13533 Biotin-lipoyl like LIS44_13560 PF01895 PhoU domain LIS44_13575 PF01964 Radical SAM ThiC family LIS44_13575 PF13667 ThiC-associated domain LIS44_13580 PF00293 NUDIX domain LIS44_13585 PF00149 Calcineurin-like phosphoesterase LIS44_13590 PF01258 Prokaryotic dksA/traR C4-type zinc finger LIS44_13595 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIS44_13605 PF01098 Cell cycle protein LIS44_13610 PF02875 Mur ligase family, glutamate ligase domain LIS44_13610 PF08245 Mur ligase middle domain LIS44_13630 PF02899 Phage integrase, N-terminal SAM-like domain LIS44_13630 PF00589 Phage integrase family LIS44_13635 PF10411 Disulfide bond isomerase protein N-terminus LIS44_13635 PF13098 Thioredoxin-like domain LIS44_13640 PF03447 Homoserine dehydrogenase, NAD binding domain LIS44_13640 PF01842 ACT domain LIS44_13640 PF00742 Homoserine dehydrogenase LIS44_13645 PF00291 Pyridoxal-phosphate dependent enzyme LIS44_13650 PF00768 D-alanyl-D-alanine carboxypeptidase LIS44_13660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_13660 PF00512 His Kinase A (phospho-acceptor) domain LIS44_13680 PF03739 Lipopolysaccharide export system permease LptF/LptG LIS44_13685 PF03739 Lipopolysaccharide export system permease LptF/LptG LIS44_13690 PF00883 Cytosol aminopeptidase family, catalytic domain LIS44_13690 PF02789 Cytosol aminopeptidase family, N-terminal domain LIS44_13705 PF09335 SNARE associated Golgi protein LIS44_13710 PF00677 Lumazine binding domain LIS44_13720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIS44_13720 PF01872 RibD C-terminal domain LIS44_13725 PF03477 ATP cone domain LIS44_13745 PF13335 Magnesium chelatase, subunit ChlI C-terminal LIS44_13745 PF01078 Magnesium chelatase, subunit ChlI LIS44_13760 PF03573 outer membrane porin, OprD family LIS44_13765 PF00719 Inorganic pyrophosphatase LIS44_13780 PF00501 AMP-binding enzyme LIS44_13780 PF13193 AMP-binding enzyme C-terminal domain LIS44_13785 PF03989 DNA gyrase C-terminal domain, beta-propeller LIS44_13785 PF00521 DNA gyrase/topoisomerase IV, subunit A LIS44_13790 PF07690 Major Facilitator Superfamily LIS44_13795 PF03458 UPF0126 domain LIS44_13800 PF02810 SEC-C motif LIS44_13805 PF03471 Transporter associated domain LIS44_13805 PF03741 Integral membrane protein TerC family LIS44_13810 PF03641 Possible lysine decarboxylase LIS44_13815 PF07690 Major Facilitator Superfamily LIS44_13860 PF08497 Radical SAM N-terminal LIS44_13860 PF11842 Domain of unknown function (DUF3362) LIS44_13860 PF04055 Radical SAM superfamily LIS44_13895 PF01327 Polypeptide deformylase LIS44_13905 PF02481 DNA recombination-mediator protein A LIS44_13905 PF17782 DprA winged helix domain LIS44_13910 PF01300 Telomere recombination LIS44_13915 PF00892 EamA-like transporter family LIS44_13950 PF08240 Alcohol dehydrogenase GroES-like domain LIS44_13950 PF00107 Zinc-binding dehydrogenase LIS44_13965 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LIS44_13975 PF00231 ATP synthase LIS44_13980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIS44_13980 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIS44_13980 PF00306 ATP synthase alpha/beta chain, C terminal domain LIS44_13990 PF00430 ATP synthase B/B' CF(0) LIS44_13995 PF00137 ATP synthase subunit C LIS44_14000 PF00119 ATP synthase A chain LIS44_14020 PF00005 ABC transporter LIS44_14025 PF00950 ABC 3 transport family LIS44_14030 PF04463 Protein of unknown function (DUF523) LIS44_14040 PF01810 LysE type translocator LIS44_14045 PF04261 Dyp-type peroxidase family LIS44_14060 PF00155 Aminotransferase class I and II LIS44_14065 PF01554 MatE LIS44_14070 PF00296 Luciferase-like monooxygenase LIS44_14075 PF00296 Luciferase-like monooxygenase LIS44_14080 PF00005 ABC transporter LIS44_14090 PF00158 Sigma-54 interaction domain LIS44_14095 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_14100 PF00005 ABC transporter LIS44_14110 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_14115 PF00528 Binding-protein-dependent transport system inner membrane component LIS44_14140 PF01609 Transposase DDE domain LIS44_14140 PF13006 Insertion element 4 transposase N-terminal LIS44_14145 PF00106 short chain dehydrogenase LIS44_14155 PF00072 Response regulator receiver domain LIS44_14155 PF00486 Transcriptional regulatory protein, C terminal LIS44_14160 PF00989 PAS fold LIS44_14160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_14160 PF00512 His Kinase A (phospho-acceptor) domain LIS44_14160 PF11808 Phosphate regulon sensor protein PhoR LIS44_14175 PF02678 Pirin LIS44_14175 PF05726 Pirin C-terminal cupin domain LIS44_14180 PF00072 Response regulator receiver domain LIS44_14180 PF00990 Diguanylate cyclase, GGDEF domain LIS44_14190 PF02540 NAD synthase LIS44_14190 PF00958 GMP synthase C terminal domain LIS44_14190 PF00117 Glutamine amidotransferase class-I LIS44_14220 PF13614 AAA domain LIS44_14230 PF01722 BolA-like protein LIS44_14265 PF07120 Protein of unknown function (DUF1376) LIS44_14415 PF03787 RAMP superfamily LIS44_14430 PF01966 HD domain LIS44_14430 PF18211 Csm1 subunit domain B LIS44_14445 PF02223 Thymidylate kinase LIS44_14470 PF01867 CRISPR associated protein Cas1 LIS44_14495 PF13657 HipA N-terminal domain LIS44_14495 PF07804 HipA-like C-terminal domain LIS44_14595 PF01661 Macro domain LIS44_14605 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LIS44_14605 PF00925 GTP cyclohydrolase II LIS44_14610 PF00885 6,7-dimethyl-8-ribityllumazine synthase LIS44_14615 PF01029 NusB family LIS44_14625 PF04608 Phosphatidylglycerophosphatase A LIS44_14630 PF12804 MobA-like NTP transferase domain LIS44_14630 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_14630 PF14602 Hexapeptide repeat of succinyl-transferase LIS44_14635 PF01380 SIS domain LIS44_14640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIS44_14640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIS44_14640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIS44_14640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIS44_14645 PF16363 GDP-mannose 4,6 dehydratase LIS44_14650 PF00342 Phosphoglucose isomerase LIS44_14655 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LIS44_14655 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIS44_14655 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIS44_14660 PF00483 Nucleotidyl transferase LIS44_14665 PF02397 Bacterial sugar transferase LIS44_14670 PF00483 Nucleotidyl transferase LIS44_14670 PF01050 Mannose-6-phosphate isomerase LIS44_14675 PF00534 Glycosyl transferases group 1 LIS44_14675 PF13439 Glycosyltransferase Family 4 LIS44_14680 PF00534 Glycosyl transferases group 1 LIS44_14690 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_14690 PF06426 Serine acetyltransferase, N-terminal LIS44_14705 PF01370 NAD dependent epimerase/dehydratase family LIS44_14710 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIS44_14710 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIS44_14715 PF02719 Polysaccharide biosynthesis protein LIS44_14720 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIS44_14725 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_14725 PF14602 Hexapeptide repeat of succinyl-transferase LIS44_14725 PF17836 PglD N-terminal domain LIS44_14730 PF02397 Bacterial sugar transferase LIS44_14740 PF00534 Glycosyl transferases group 1 LIS44_14740 PF13477 Glycosyl transferase 4-like LIS44_14745 PF13439 Glycosyltransferase Family 4 LIS44_14745 PF00534 Glycosyl transferases group 1 LIS44_14750 PF00534 Glycosyl transferases group 1 LIS44_14750 PF13439 Glycosyltransferase Family 4 LIS44_14755 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_14770 PF01370 NAD dependent epimerase/dehydratase family LIS44_14775 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIS44_14775 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LIS44_14775 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIS44_14780 PF02563 Polysaccharide biosynthesis/export protein LIS44_14780 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LIS44_14780 PF10531 SLBB domain LIS44_14785 PF01451 Low molecular weight phosphotyrosine protein phosphatase LIS44_14790 PF13614 AAA domain LIS44_14790 PF13807 G-rich domain on putative tyrosine kinase LIS44_14790 PF02706 Chain length determinant protein LIS44_14795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIS44_14795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LIS44_14800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LIS44_14800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIS44_14815 PF10576 Iron-sulfur binding domain of endonuclease III LIS44_14815 PF00633 Helix-hairpin-helix motif LIS44_14815 PF00730 HhH-GPD superfamily base excision DNA repair protein LIS44_14815 PF14815 NUDIX domain LIS44_14830 PF03352 Methyladenine glycosylase LIS44_14835 PF08240 Alcohol dehydrogenase GroES-like domain LIS44_14835 PF00107 Zinc-binding dehydrogenase LIS44_14845 PF05173 Dihydrodipicolinate reductase, C-terminus LIS44_14845 PF01113 Dihydrodipicolinate reductase, N-terminus LIS44_14860 PF00226 DnaJ domain LIS44_14860 PF01556 DnaJ C terminal domain LIS44_14860 PF00684 DnaJ central domain LIS44_14870 PF00873 AcrB/AcrD/AcrF family LIS44_14875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIS44_14880 PF00440 Bacterial regulatory proteins, tetR family LIS44_14880 PF08361 MAATS-type transcriptional repressor, C-terminal region LIS44_14885 PF00311 Phosphoenolpyruvate carboxylase LIS44_14890 PF00860 Permease family LIS44_14910 PF00920 Dehydratase family LIS44_14915 PF01609 Transposase DDE domain LIS44_14915 PF13006 Insertion element 4 transposase N-terminal LIS44_14925 PF02911 Formyl transferase, C-terminal domain LIS44_14925 PF00551 Formyl transferase LIS44_14930 PF01029 NusB family LIS44_14930 PF01189 16S rRNA methyltransferase RsmB/F LIS44_14950 PF00209 Sodium:neurotransmitter symporter family LIS44_15000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIS44_15010 PF07859 alpha/beta hydrolase fold LIS44_15020 PF01025 GrpE LIS44_15025 PF00012 Hsp70 protein LIS44_15040 PF01521 Iron-sulphur cluster biosynthesis LIS44_15065 PF00005 ABC transporter LIS44_15065 PF12848 ABC transporter LIS44_15085 PF01545 Cation efflux family LIS44_15085 PF16916 Dimerisation domain of Zinc Transporter LIS44_15090 PF02583 Metal-sensitive transcriptional repressor LIS44_15100 PF01926 50S ribosome-binding GTPase LIS44_15100 PF12631 MnmE helical domain LIS44_15100 PF10396 GTP-binding protein TrmE N-terminus LIS44_15110 PF01809 Putative membrane protein insertion efficiency factor LIS44_15115 PF00825 Ribonuclease P LIS44_15120 PF00468 Ribosomal protein L34 LIS44_15135 PF05973 Phage derived protein Gp49-like (DUF891) LIS44_15140 PF00719 Inorganic pyrophosphatase LIS44_15145 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LIS44_15155 PF01740 STAS domain LIS44_15155 PF00916 Sulfate permease family LIS44_15170 PF01051 Initiator Replication protein LIS44_15180 PF03432 Relaxase/Mobilisation nuclease domain LIS44_15190 PF02384 N-6 DNA Methylase LIS44_15245 PF05973 Phage derived protein Gp49-like (DUF891) LIS44_15310 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LIS44_15315 PF02796 Helix-turn-helix domain of resolvase LIS44_15315 PF00239 Resolvase, N terminal domain LIS44_15320 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LIS44_15355 PF18766 SWI2/SNF2 ATPase LIS44_15355 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LIS44_15355 PF11867 Domain of unknown function (DUF3387) LIS44_15390 PF18766 SWI2/SNF2 ATPase LIS44_15390 PF12008 Type I restriction and modification enzyme - subunit R C terminal LIS44_15390 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LIS44_15395 PF01420 Type I restriction modification DNA specificity domain LIS44_15415 PF00239 Resolvase, N terminal domain LIS44_15415 PF02796 Helix-turn-helix domain of resolvase LIS44_15430 PF03050 Transposase IS66 family LIS44_15430 PF13817 IS66 C-terminal element LIS44_15430 PF13007 Transposase C of IS166 homeodomain LIS44_15430 PF13005 zinc-finger binding domain of transposase IS66 LIS44_15470 PF13087 AAA domain LIS44_15470 PF13086 AAA domain LIS44_15470 PF13195 Protein of unknown function (DUF4011) LIS44_15485 PF13610 DDE domain LIS44_15490 PF03601 Conserved hypothetical protein 698 LIS44_15495 PF03466 LysR substrate binding domain LIS44_15495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_15510 PF06100 MCRA family LIS44_15515 PF13737 Transposase DDE domain LIS44_15550 PF02661 Fic/DOC family LIS44_15580 PF13438 Domain of unknown function (DUF4113) LIS44_15580 PF11799 impB/mucB/samB family C-terminal domain LIS44_15580 PF00817 impB/mucB/samB family LIS44_15585 PF00717 Peptidase S24-like LIS44_15585 PF01726 LexA DNA binding domain LIS44_15605 PF04233 Phage Mu protein F like protein LIS44_15615 PF01740 STAS domain LIS44_15615 PF00916 Sulfate permease family LIS44_15625 PF13089 Polyphosphate kinase N-terminal domain LIS44_15625 PF17941 Polyphosphate kinase C-terminal domain 1 LIS44_15625 PF02503 Polyphosphate kinase middle domain LIS44_15625 PF13090 Polyphosphate kinase C-terminal domain 2 LIS44_15630 PF00106 short chain dehydrogenase LIS44_15640 PF00561 alpha/beta hydrolase fold LIS44_15640 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LIS44_15645 PF02803 Thiolase, C-terminal domain LIS44_15645 PF00108 Thiolase, N-terminal domain LIS44_15650 PF00149 Calcineurin-like phosphoesterase LIS44_15650 PF02872 5'-nucleotidase, C-terminal domain LIS44_15675 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LIS44_15700 PF01593 Flavin containing amine oxidoreductase LIS44_15710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIS44_15710 PF03466 LysR substrate binding domain LIS44_15715 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LIS44_15720 PF01348 Type II intron maturase LIS44_15720 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LIS44_15730 PF00293 NUDIX domain LIS44_15730 PF09297 NADH pyrophosphatase zinc ribbon domain LIS44_15750 PF00313 'Cold-shock' DNA-binding domain LIS44_15780 PF13817 IS66 C-terminal element LIS44_15780 PF13007 Transposase C of IS166 homeodomain LIS44_15780 PF13005 zinc-finger binding domain of transposase IS66 LIS44_15780 PF03050 Transposase IS66 family LIS44_15800 PF08212 Lipocalin-like domain LIS44_15830 PF05958 tRNA (Uracil-5-)-methyltransferase LIS44_15835 PF00512 His Kinase A (phospho-acceptor) domain LIS44_15835 PF08521 Two-component sensor kinase N-terminal LIS44_15835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_15855 PF00990 Diguanylate cyclase, GGDEF domain LIS44_15860 PF01385 Probable transposase LIS44_15860 PF12323 Helix-turn-helix domain LIS44_15860 PF07282 Putative transposase DNA-binding domain LIS44_15870 PF03707 Bacterial signalling protein N terminal repeat LIS44_15870 PF00990 Diguanylate cyclase, GGDEF domain LIS44_15870 PF00563 EAL domain LIS44_15890 PF02796 Helix-turn-helix domain of resolvase LIS44_15890 PF00239 Resolvase, N terminal domain LIS44_15940 PF13817 IS66 C-terminal element LIS44_15940 PF03050 Transposase IS66 family LIS44_15940 PF13007 Transposase C of IS166 homeodomain LIS44_15940 PF13005 zinc-finger binding domain of transposase IS66 LIS44_15955 PF13411 MerR HTH family regulatory protein LIS44_15955 PF07739 TipAS antibiotic-recognition domain LIS44_15970 PF00962 Adenosine/AMP deaminase LIS44_16015 PF00072 Response regulator receiver domain LIS44_16015 PF00196 Bacterial regulatory proteins, luxR family LIS44_16020 PF08448 PAS fold LIS44_16020 PF13426 PAS domain LIS44_16020 PF00072 Response regulator receiver domain LIS44_16020 PF00512 His Kinase A (phospho-acceptor) domain LIS44_16020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_16025 PF00682 HMGL-like LIS44_16025 PF07836 DmpG-like communication domain LIS44_16030 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation LIS44_16030 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIS44_16035 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIS44_16040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIS44_16045 PF00106 short chain dehydrogenase LIS44_16050 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_16050 PF14759 Reductase C-terminal LIS44_16055 PF00355 Rieske [2Fe-2S] domain LIS44_16060 PF00866 Ring hydroxylating beta subunit LIS44_16070 PF00561 alpha/beta hydrolase fold LIS44_16095 PF00005 ABC transporter LIS44_16100 PF13533 Biotin-lipoyl like LIS44_16105 PF01545 Cation efflux family LIS44_16105 PF16916 Dimerisation domain of Zinc Transporter LIS44_16110 PF08447 PAS fold LIS44_16110 PF00990 Diguanylate cyclase, GGDEF domain LIS44_16110 PF08448 PAS fold LIS44_16110 PF00563 EAL domain LIS44_16115 PF00990 Diguanylate cyclase, GGDEF domain LIS44_16115 PF00072 Response regulator receiver domain LIS44_16130 PF13614 AAA domain LIS44_16135 PF02195 ParB-like nuclease domain LIS44_16135 PF17762 HTH domain found in ParB protein LIS44_16155 PF00501 AMP-binding enzyme LIS44_16160 PF01385 Probable transposase LIS44_16160 PF07282 Putative transposase DNA-binding domain LIS44_16160 PF12323 Helix-turn-helix domain LIS44_16175 PF00925 GTP cyclohydrolase II LIS44_16185 PF00593 TonB dependent receptor LIS44_16185 PF07715 TonB-dependent Receptor Plug Domain LIS44_16195 PF02753 Pili assembly chaperone PapD, C-terminal domain LIS44_16195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LIS44_16200 PF13953 PapC C-terminal domain LIS44_16200 PF13954 PapC N-terminal domain LIS44_16200 PF00577 Outer membrane usher protein LIS44_16210 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LIS44_16210 PF02753 Pili assembly chaperone PapD, C-terminal domain LIS44_16215 PF03960 ArsC family LIS44_16220 PF01022 Bacterial regulatory protein, arsR family LIS44_16235 PF00582 Universal stress protein family LIS44_16240 PF01022 Bacterial regulatory protein, arsR family LIS44_16250 PF01758 Sodium Bile acid symporter family LIS44_16255 PF03358 NADPH-dependent FMN reductase LIS44_16335 PF07282 Putative transposase DNA-binding domain LIS44_16335 PF01385 Probable transposase LIS44_16335 PF12323 Helix-turn-helix domain LIS44_16360 PF13340 Putative transposase of IS4/5 family (DUF4096) LIS44_16370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIS44_16370 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIS44_16370 PF02824 TGS domain LIS44_16370 PF03129 Anticodon binding domain LIS44_16375 PF01979 Amidohydrolase family LIS44_16380 PF00132 Bacterial transferase hexapeptide (six repeats) LIS44_16380 PF00101 Ribulose bisphosphate carboxylase, small chain LIS44_16385 PF01502 Phosphoribosyl-AMP cyclohydrolase LIS44_16390 PF02649 Type I GTP cyclohydrolase folE2 LIS44_16395 PF01475 Ferric uptake regulator family LIS44_16410 PF02492 CobW/HypB/UreG, nucleotide-binding domain LIS44_16410 PF07683 Cobalamin synthesis protein cobW C-terminal domain LIS44_16430 PF00581 Rhodanese-like domain LIS44_16470 PF04273 Putative phosphatase (DUF442) LIS44_16470 PF00753 Metallo-beta-lactamase superfamily LIS44_16485 PF01654 Cytochrome bd terminal oxidase subunit I LIS44_16490 PF02322 Cytochrome bd terminal oxidase subunit II LIS44_16500 PF10518 TAT (twin-arginine translocation) pathway signal sequence LIS44_16500 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIS44_16500 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding LIS44_16525 PF00902 Sec-independent protein translocase protein (TatC) LIS44_16530 PF02416 mttA/Hcf106 family LIS44_16535 PF02416 mttA/Hcf106 family LIS44_16545 PF00578 AhpC/TSA family LIS44_16545 PF10417 C-terminal domain of 1-Cys peroxiredoxin LIS44_16550 PF00581 Rhodanese-like domain LIS44_16565 PF00005 ABC transporter LIS44_16575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIS44_16585 PF03653 Uncharacterised protein family (UPF0093) LIS44_16655 PF13533 Biotin-lipoyl like LIS44_16660 PF00873 AcrB/AcrD/AcrF family LIS44_16675 PF00072 Response regulator receiver domain LIS44_16675 PF00486 Transcriptional regulatory protein, C terminal LIS44_16680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIS44_16680 PF08521 Two-component sensor kinase N-terminal LIS44_16680 PF00512 His Kinase A (phospho-acceptor) domain LIS44_16685 PF00210 Ferritin-like domain LIS44_16720 PF04143 Sulphur transport LIS44_16730 PF00753 Metallo-beta-lactamase superfamily LIS44_16735 PF01925 Sulfite exporter TauE/SafE LIS44_16770 PF13533 Biotin-lipoyl like LIS44_16775 PF00005 ABC transporter LIS44_16835 PF01661 Macro domain