locus-tag	class	description
LIS44_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LIS44_00020	COG0187	DNA topoisomerase II activity
LIS44_00040	COG0402	S-adenosylhomocysteine deaminase activity
LIS44_00055	COG1063	alcohol dehydrogenase
LIS44_00060	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LIS44_00080	COG2951	lytic endotransglycosylase activity
LIS44_00085	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LIS44_00090	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LIS44_00130	COG2814	Major facilitator Superfamily
LIS44_00150	COG0666	response to abiotic stimulus
LIS44_00155	COG2433	Pfam Transposase IS66
LIS44_00165	COG2963	transposase activity
LIS44_00170	COG2133	pyrroloquinoline quinone binding
LIS44_00180	COG1047	Peptidyl-prolyl cis-trans
LIS44_00190	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LIS44_00195	COG0196	riboflavin kinase activity
LIS44_00205	COG1309	transcriptional regulator
LIS44_00215	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIS44_00220	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIS44_00225	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIS44_00235	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LIS44_00235	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LIS44_00255	COG1028	Short-chain dehydrogenase reductase Sdr
LIS44_00260	COG0546	phosphoglycolate phosphatase activity
LIS44_00265	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LIS44_00270	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LIS44_00290	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LIS44_00325	COG5487	UPF0391 membrane protein
LIS44_00330	COG2983	Belongs to the UPF0260 family
LIS44_00335	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LIS44_00350	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LIS44_00355	COG2814	Major facilitator Superfamily
LIS44_00360	COG1335	isochorismatase
LIS44_00365	COG0385	Bile acid
LIS44_00375	COG3830	Belongs to the UPF0237 family
LIS44_00375	COG0560	Phosphoserine phosphatase
LIS44_00425	COG2733	membrane
LIS44_00440	COG2918	glutathione biosynthetic process
LIS44_00445	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
LIS44_00455	COG3150	esterase
LIS44_00465	COG1247	-acetyltransferase
LIS44_00470	COG3248	Nucleoside-binding outer membrane protein
LIS44_00495	COG0625	glutathione transferase activity
LIS44_00500	COG3706	GGDEF domain
LIS44_00505	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LIS44_00520	COG1393	Belongs to the ArsC family
LIS44_00530	COG0708	Exodeoxyribonuclease III
LIS44_00555	COG0189	ligase activity
LIS44_00560	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LIS44_00575	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LIS44_00585	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LIS44_00615	COG2119	membrane
LIS44_00620	COG0426	domain, Protein
LIS44_00620	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIS44_00645	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LIS44_00670	COG1902	pentaerythritol trinitrate reductase activity
LIS44_00675	COG1519	Transferase
LIS44_00680	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LIS44_00685	COG0668	transmembrane transport
LIS44_00695	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIS44_00720	COG0431	NADPH-dependent FMN reductase
LIS44_00740	COG3162	membrane
LIS44_00790	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LIS44_00790	COG0352	thiamine-phosphate diphosphorylase activity
LIS44_00790	COG0351	phosphomethylpyrimidine kinase
LIS44_00800	COG2814	Major facilitator Superfamily
LIS44_00805	COG0629	single-stranded DNA binding
LIS44_00820	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
LIS44_00865	COG4372	Transposase
LIS44_00875	COG2963	transposase activity
LIS44_00895	COG3177	Filamentation induced by cAMP protein fic
LIS44_00900	COG0582	viral genome integration into host DNA
LIS44_00995	COG0305	Participates in initiation and elongation during chromosome replication
LIS44_01020	COG3646	Phage regulatory protein
LIS44_01035	COG0582	viral genome integration into host DNA
LIS44_01085	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIS44_01090	COG1278	Cold shock
LIS44_01105	COG0531	amino acid
LIS44_01110	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIS44_01110	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
LIS44_01130	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LIS44_01215	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LIS44_01230	COG3275	phosphorelay sensor kinase activity
LIS44_01240	COG0181	hydroxymethylbilane synthase activity
LIS44_01285	COG1716	ATPase activity
LIS44_01290	COG0546	phosphoglycolate phosphatase activity
LIS44_01350	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LIS44_01355	COG0222	ribosome binding
LIS44_01360	COG0085	RNA polymerase activity
LIS44_01390	COG2056	Na+-H+ antiporter family
LIS44_01405	COG0326	Molecular chaperone. Has ATPase activity
LIS44_01440	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LIS44_01455	COG0427	acetyl-CoA hydrolase
LIS44_01490	COG2801	Transposase and inactivated derivatives
LIS44_01495	COG2963	transposase activity
LIS44_01500	COG4221	oxidoreductase activity
LIS44_01510	COG0488	(ABC) transporter
LIS44_01580	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LIS44_01585	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LIS44_01590	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LIS44_01595	COG2226	methyltransferase
LIS44_01600	COG0675	Transposase, IS605 OrfB family
LIS44_01655	COG0493	'glutamate synthase
LIS44_01665	COG1704	LemA family
LIS44_01670	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
LIS44_01775	COG4969	Belongs to the N-Me-Phe pilin family
LIS44_01780	COG3307	-O-antigen
LIS44_01795	COG3307	-O-antigen
LIS44_01815	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LIS44_01820	COG1758	RNA polymerase activity
LIS44_01825	COG0194	GDP metabolic process
LIS44_01835	COG4969	Belongs to the N-Me-Phe pilin family
LIS44_01870	COG0228	four-way junction DNA binding
LIS44_01875	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LIS44_01885	COG0335	large ribosomal subunit rRNA binding
LIS44_01895	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
LIS44_01900	COG5380	lipid catabolic process
LIS44_01905	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LIS44_01925	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LIS44_01930	COG0277	FAD linked oxidase domain protein
LIS44_01955	COG2814	Major facilitator Superfamily
LIS44_01965	COG0628	permease
LIS44_01970	COG1192	Involved in chromosome partitioning
LIS44_02010	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LIS44_02015	COG0534	Mate efflux family protein
LIS44_02025	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIS44_02040	COG1960	acyl-CoA dehydrogenase activity
LIS44_02055	COG0408	coproporphyrinogen oxidase activity
LIS44_02060	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIS44_02080	COG0513	Belongs to the DEAD box helicase family
LIS44_02085	COG1127	ABC transporter
LIS44_02090	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LIS44_02095	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LIS44_02110	COG0598	Magnesium transport protein CorA
LIS44_02125	COG1040	competence protein
LIS44_02140	COG2937	Belongs to the GPAT DAPAT family
LIS44_02145	COG1946	Acyl-CoA thioesterase
LIS44_02165	COG1959	2 iron, 2 sulfur cluster binding
LIS44_02175	COG0626	cystathionine gamma-synthase activity
LIS44_02190	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LIS44_02195	COG0088	Forms part of the polypeptide exit tunnel
LIS44_02215	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LIS44_02255	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LIS44_02260	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LIS44_02265	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LIS44_02275	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LIS44_02300	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LIS44_02310	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LIS44_02315	COG0202	RNA polymerase activity
LIS44_02320	COG0203	ribosomal protein L17
LIS44_02325	COG2072	flavoprotein involved in K transport
LIS44_02335	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LIS44_02365	COG0697	spore germination
LIS44_02375	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LIS44_02380	COG0339	signal peptide processing
LIS44_02385	COG3385	transposase activity
LIS44_02390	COG0557	exoribonuclease II activity
LIS44_02425	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIS44_02430	COG3385	transposase activity
LIS44_02435	COG1295	ribonuclease BN
LIS44_02495	COG1702	phosphate starvation-inducible protein PhoH
LIS44_02500	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIS44_02505	COG0741	lytic transglycosylase activity
LIS44_02505	COG1196	nuclear chromosome segregation
LIS44_02505	COG0739	heme binding
LIS44_02540	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LIS44_02545	COG1183	phosphatidylcholine synthase activity
LIS44_02600	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIS44_02665	COG0613	PHP domain protein
LIS44_02670	COG3781	membrane
LIS44_02675	COG2003	Belongs to the UPF0758 family
LIS44_02680	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIS44_02690	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIS44_02705	COG4372	Transposase
LIS44_02710	COG2814	Major facilitator Superfamily
LIS44_02735	COG0004	ammonium transporteR
LIS44_02750	COG3622	Belongs to the hyi family
LIS44_02755	COG2084	Dehydrogenase
LIS44_02760	COG1024	Enoyl-CoA hydratase
LIS44_02785	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LIS44_02800	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIS44_02805	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIS44_02830	COG2986	histidine ammonia-lyase
LIS44_02870	COG1028	Short-chain dehydrogenase reductase Sdr
LIS44_02895	COG1862	Preprotein translocase
LIS44_02910	COG1704	LemA family
LIS44_02920	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LIS44_02945	COG5002	protein histidine kinase activity
LIS44_02950	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
LIS44_02975	COG0726	polysaccharide deacetylase
LIS44_02985	COG0438	transferase activity, transferring glycosyl groups
LIS44_03015	COG5039	Polysaccharide pyruvyl transferase
LIS44_03025	COG1560	Kdo2-lipid A biosynthetic process
LIS44_03035	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LIS44_03075	COG1960	acyl-CoA dehydrogenase activity
LIS44_03080	COG1960	acyl-CoA dehydrogenase activity
LIS44_03090	COG2205	protein histidine kinase activity
LIS44_03095	COG0745	RESPONSE REGULATOR receiver
LIS44_03100	COG2315	Protein conserved in bacteria
LIS44_03105	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LIS44_03125	COG2096	Adenosyltransferase
LIS44_03130	COG4206	TonB-dependent receptor
LIS44_03170	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LIS44_03195	COG0450	alkyl hydroperoxide reductase
LIS44_03215	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LIS44_03285	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LIS44_03340	COG0494	nUDIX hydrolase
LIS44_03355	COG1968	undecaprenyl-diphosphatase activity
LIS44_03370	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
LIS44_03375	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LIS44_03400	COG2132	Multicopper oxidase
LIS44_03415	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LIS44_03430	COG2814	Major facilitator Superfamily
LIS44_03435	COG2030	dehydratase
LIS44_03435	COG1012	belongs to the aldehyde dehydrogenase family
LIS44_03440	COG3396	Phenylacetate-CoA oxygenase
LIS44_03445	COG3460	Phenylacetate-CoA oxygenase
LIS44_03450	COG3396	Phenylacetate-CoA oxygenase
LIS44_03460	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LIS44_03470	COG1024	Enoyl-CoA hydratase
LIS44_03475	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIS44_03480	COG0183	Belongs to the thiolase family
LIS44_03485	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
LIS44_03490	COG3327	negative regulation of DNA-templated transcription, initiation
LIS44_03510	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LIS44_03530	COG0730	response to heat
LIS44_03540	COG1196	nuclear chromosome segregation
LIS44_03550	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LIS44_03555	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
LIS44_03560	COG2193	ferroxidase activity
LIS44_03565	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIS44_03585	COG4106	trans-aconitate 2-methyltransferase activity
LIS44_03605	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LIS44_03610	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
LIS44_03625	COG0009	L-threonylcarbamoyladenylate synthase
LIS44_03630	COG3101	peptidyl-lysine hydroxylation
LIS44_03635	COG1399	metal-binding, possibly nucleic acid-binding protein
LIS44_03650	COG1028	Short-chain dehydrogenase reductase Sdr
LIS44_03660	COG1652	LysM domain
LIS44_03670	COG0596	Alpha beta hydrolase
LIS44_03680	COG2314	TM2 domain
LIS44_03685	COG3152	Membrane
LIS44_03695	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LIS44_03715	COG0745	RESPONSE REGULATOR receiver
LIS44_03720	COG2205	protein histidine kinase activity
LIS44_03730	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIS44_03750	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
LIS44_03765	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIS44_03775	COG0713	ATP synthesis coupled electron transport
LIS44_03780	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LIS44_03795	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LIS44_03810	COG1278	Cold shock
LIS44_03815	COG0583	DNA-binding transcription factor activity
LIS44_03850	COG2081	HI0933 family
LIS44_03855	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LIS44_03885	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIS44_03900	COG1566	PFAM secretion protein HlyD family protein
LIS44_03905	COG2814	Major facilitator Superfamily
LIS44_03910	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LIS44_03920	COG0582	viral genome integration into host DNA
LIS44_03995	COG2963	transposase activity
LIS44_04005	COG4372	Transposase
LIS44_04095	COG0515	serine threonine protein kinase
LIS44_04095	COG2815	serine threonine protein kinase
LIS44_04105	COG0514	ATP-dependent DNA helicase (RecQ)
LIS44_04115	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIS44_04120	COG1012	belongs to the aldehyde dehydrogenase family
LIS44_04130	COG3384	dioxygenase
LIS44_04140	COG4638	Rieske (2fe-2S)
LIS44_04160	COG0489	protein tyrosine kinase activity
LIS44_04200	COG0442	prolyl-tRNA aminoacylation
LIS44_04210	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIS44_04235	COG0840	transmembrane signaling receptor activity
LIS44_04240	COG0643	Histidine kinase
LIS44_04240	COG2198	Histidine kinase
LIS44_04240	COG0784	Response regulator, receiver
LIS44_04270	COG1376	ErfK ybiS ycfS ynhG family protein
LIS44_04325	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LIS44_04335	COG1289	transmembrane transporter activity
LIS44_04340	COG2814	Major facilitator Superfamily
LIS44_04350	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIS44_04370	COG1607	acyl-coa hydrolase
LIS44_04380	COG2814	Major facilitator Superfamily
LIS44_04385	COG0583	DNA-binding transcription factor activity
LIS44_04390	COG0625	glutathione transferase activity
LIS44_04405	COG0523	cobalamin synthesis protein
LIS44_04410	COG4681	YaeQ
LIS44_04425	COG4251	negative regulation of phosphorylation
LIS44_04425	COG3706	GGDEF domain
LIS44_04425	COG2203	Gaf domain
LIS44_04425	COG5001	Diguanylate cyclase
LIS44_04430	COG0726	polysaccharide deacetylase
LIS44_04430	COG1649	PFAM Uncharacterised BCR, COG1649
LIS44_04465	COG1024	Enoyl-CoA hydratase
LIS44_04490	COG0242	peptide deformylase activity
LIS44_04560	COG4181	ATPase activity
LIS44_04565	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LIS44_04585	COG0583	DNA-binding transcription factor activity
LIS44_04595	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIS44_04600	COG1773	rubredoxin
LIS44_04605	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LIS44_04630	COG2354	Protein conserved in bacteria
LIS44_04635	COG2321	neutral zinc metallopeptidase
LIS44_04650	COG3695	enzyme binding
LIS44_04665	COG0110	maltose O-acetyltransferase activity
LIS44_04670	COG0251	oxidation-reduction process
LIS44_04675	COG1309	transcriptional regulator
LIS44_04685	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LIS44_04690	COG0505	Belongs to the CarA family
LIS44_04700	COG3328	transposase activity
LIS44_04720	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIS44_04725	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LIS44_04795	COG0501	Belongs to the peptidase M48B family
LIS44_04800	COG1196	nuclear chromosome segregation
LIS44_04800	COG0741	lytic transglycosylase activity
LIS44_04800	COG0739	heme binding
LIS44_04815	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LIS44_04835	COG1902	pentaerythritol trinitrate reductase activity
LIS44_04860	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LIS44_04880	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LIS44_04885	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LIS44_04890	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
LIS44_04920	COG1113	amino acid transport
LIS44_04930	COG0019	diaminopimelate decarboxylase activity
LIS44_04935	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LIS44_04945	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LIS44_04955	COG1522	sequence-specific DNA binding
LIS44_04960	COG1280	lysine exporter protein (LysE YggA)
LIS44_04990	COG1301	dicarboxylic acid transport
LIS44_05005	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIS44_05030	COG1671	Belongs to the UPF0178 family
LIS44_05035	COG0697	spore germination
LIS44_05045	COG4591	ABC-type transport system involved in lipoprotein release permease component
LIS44_05050	COG1136	(ABC) transporter
LIS44_05075	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LIS44_05080	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LIS44_05085	COG0628	permease
LIS44_05090	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LIS44_05120	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIS44_05140	COG0823	Involved in the tonB-independent uptake of proteins
LIS44_05160	COG0824	Thioesterase
LIS44_05165	COG1473	amidohydrolase
LIS44_05180	COG2255	four-way junction helicase activity
LIS44_05205	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LIS44_05205	COG3323	Protein of unknown function (DUF1653)
LIS44_05210	COG0778	Nitroreductase
LIS44_05215	COG1024	Enoyl-CoA hydratase
LIS44_05220	COG1056	cytidyltransferase-related domain
LIS44_05220	COG1051	belongs to the nudix hydrolase family
LIS44_05225	COG2353	YceI-like domain
LIS44_05230	COG0583	DNA-binding transcription factor activity
LIS44_05240	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIS44_05255	COG0602	queuosine metabolic process
LIS44_05275	COG0583	DNA-binding transcription factor activity
LIS44_05280	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LIS44_05285	COG4208	sulfate ABC transporter
LIS44_05300	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LIS44_05315	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LIS44_05335	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIS44_05350	COG0681	Belongs to the peptidase S26 family
LIS44_05360	COG0571	ribonuclease III activity
LIS44_05365	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LIS44_05390	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LIS44_05410	COG2175	clavaminate synthase activity
LIS44_05430	COG2199	diguanylate cyclase activity
LIS44_05440	COG0556	nucleotide-excision repair
LIS44_05460	COG1733	regulation of RNA biosynthetic process
LIS44_05465	COG2814	Major facilitator Superfamily
LIS44_05475	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LIS44_05480	COG0671	phosphoesterase, PA-phosphatase related
LIS44_05490	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIS44_05495	COG0076	glutamate decarboxylase activity
LIS44_05500	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LIS44_05505	COG0573	inorganic phosphate transmembrane transporter activity
LIS44_05545	COG0482	sulfurtransferase activity
LIS44_05570	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LIS44_05575	COG1686	Belongs to the peptidase S11 family
LIS44_05600	COG0583	DNA-binding transcription factor activity
LIS44_05605	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LIS44_05610	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LIS44_05615	COG1067	ATP-dependent peptidase activity
LIS44_05650	COG1509	lysine 2,3-aminomutase activity
LIS44_05660	COG1966	Carbon starvation protein
LIS44_05670	COG0714	Associated with various cellular activities
LIS44_05700	COG3385	transposase activity
LIS44_05760	COG3634	alkyl hydroperoxide reductase activity
LIS44_05765	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LIS44_05770	COG0826	peptidase U32
LIS44_05775	COG0789	Transcriptional regulator
LIS44_05795	COG1720	tRNA m6t6A37 methyltransferase activity
LIS44_05805	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LIS44_05820	COG0642	Histidine kinase
LIS44_05830	COG0494	nUDIX hydrolase
LIS44_05840	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIS44_05845	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LIS44_05850	COG3139	Protein of unknown function (DUF1315)
LIS44_05855	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LIS44_05860	COG1301	dicarboxylic acid transport
LIS44_05865	COG1960	acyl-CoA dehydrogenase activity
LIS44_05870	COG0693	protein deglycase activity
LIS44_05880	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LIS44_05885	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LIS44_05910	COG2252	PERMEase
LIS44_05915	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LIS44_05925	COG3038	cytochrome b561
LIS44_05935	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LIS44_05945	COG0527	aspartate kinase activity
LIS44_05950	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LIS44_05955	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LIS44_05970	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LIS44_05985	COG0667	Aldo Keto reductase
LIS44_05995	COG1765	OsmC-like protein
LIS44_06000	COG0542	response to heat
LIS44_06035	COG0540	Belongs to the ATCase OTCase family
LIS44_06045	COG2885	chlorophyll binding
LIS44_06045	COG3047	cAMP biosynthetic process
LIS44_06060	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LIS44_06065	COG0659	secondary active sulfate transmembrane transporter activity
LIS44_06070	COG0625	glutathione transferase activity
LIS44_06080	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LIS44_06095	COG2363	Small membrane protein
LIS44_06110	COG1278	Cold shock
LIS44_06115	COG0513	Belongs to the DEAD box helicase family
LIS44_06125	COG0778	Nitroreductase
LIS44_06150	COG0167	dihydroorotate dehydrogenase activity
LIS44_06180	COG4783	chaperone-mediated protein folding
LIS44_06195	COG1610	YqeY-like protein
LIS44_06220	COG2815	serine threonine protein kinase
LIS44_06220	COG0515	serine threonine protein kinase
LIS44_06270	COG0612	Peptidase, M16
LIS44_06295	COG3025	triphosphatase activity
LIS44_06305	COG0352	thiamine-phosphate diphosphorylase activity
LIS44_06345	COG1309	transcriptional regulator
LIS44_06370	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIS44_06380	COG2070	2-Nitropropane dioxygenase
LIS44_06415	COG3634	alkyl hydroperoxide reductase activity
LIS44_06460	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LIS44_06465	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIS44_06475	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LIS44_06490	COG2807	transmembrane transport
LIS44_06495	COG2707	UPF0756 membrane protein
LIS44_06520	COG0802	atpase or kinase
LIS44_06525	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LIS44_06535	COG1923	regulation of RNA biosynthetic process
LIS44_06540	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIS44_06550	COG3178	'Phosphotransferase
LIS44_06555	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LIS44_06565	COG1192	Involved in chromosome partitioning
LIS44_06570	COG1475	DNA binding
LIS44_06575	COG0811	peptide transport
LIS44_06585	COG1132	(ABC) transporter
LIS44_06590	COG1663	tetraacyldisaccharide 4'-kinase activity
LIS44_06610	COG0084	hydrolase, TatD family'
LIS44_06645	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LIS44_06675	COG0776	regulation of translation
LIS44_06685	COG0284	orotidine-5'-phosphate decarboxylase activity
LIS44_06690	COG2431	L-lysine efflux transmembrane transporter activity
LIS44_06700	COG3335	DDE superfamily endonuclease
LIS44_06720	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LIS44_06730	COG3328	transposase activity
LIS44_06790	COG0308	aminopeptidase N
LIS44_06800	COG0589	response to stress
LIS44_06805	COG0589	response to stress
LIS44_06815	COG3135	benzoate transporter
LIS44_06830	COG0583	DNA-binding transcription factor activity
LIS44_06840	COG0183	Belongs to the thiolase family
LIS44_06860	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIS44_06870	COG3328	transposase activity
LIS44_06895	COG0824	Thioesterase
LIS44_06905	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LIS44_06925	COG0069	glutamate synthase activity
LIS44_06935	COG2308	Evidence 4 Homologs of previously reported genes of
LIS44_06945	COG1305	Transglutaminase-like
LIS44_06955	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LIS44_06970	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LIS44_06975	COG0360	Binds together with S18 to 16S ribosomal RNA
LIS44_06985	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LIS44_06990	COG1845	cytochrome c oxidase, subunit III
LIS44_06995	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LIS44_07030	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIS44_07045	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LIS44_07050	COG2890	protein-(glutamine-N5) methyltransferase activity
LIS44_07055	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIS44_07060	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIS44_07080	COG1960	acyl-CoA dehydrogenase activity
LIS44_07085	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIS44_07090	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIS44_07100	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LIS44_07125	COG0477	Major facilitator Superfamily
LIS44_07165	COG2199	diguanylate cyclase activity
LIS44_07165	COG2203	Gaf domain
LIS44_07190	COG0024	Methionine aminopeptidase
LIS44_07200	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LIS44_07205	COG2267	carboxylic ester hydrolase activity
LIS44_07215	COG1902	pentaerythritol trinitrate reductase activity
LIS44_07215	COG0446	pyridine nucleotide-disulphide oxidoreductase
LIS44_07270	COG2814	Major facilitator Superfamily
LIS44_07280	COG0439	Biotin carboxylase
LIS44_07285	COG0511	ligase activity, forming carbon-carbon bonds
LIS44_07325	COG0596	Alpha beta hydrolase
LIS44_07420	COG2885	chlorophyll binding
LIS44_07430	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIS44_07445	COG1136	(ABC) transporter
LIS44_07465	COG2814	Major facilitator Superfamily
LIS44_07470	COG0583	DNA-binding transcription factor activity
LIS44_07480	COG4829	muconolactone delta-isomerase
LIS44_07495	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
LIS44_07500	COG0543	2 iron, 2 sulfur cluster binding
LIS44_07500	COG0633	Ferredoxin
LIS44_07505	COG1028	Short-chain dehydrogenase reductase Sdr
LIS44_07515	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LIS44_07520	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LIS44_07525	COG0183	Belongs to the thiolase family
LIS44_07530	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LIS44_07540	COG1944	ATP diphosphatase activity
LIS44_07565	COG2223	nitrite transmembrane transporter activity
LIS44_07585	COG0427	acetyl-CoA hydrolase
LIS44_07590	COG0183	Belongs to the thiolase family
LIS44_07595	COG1960	acyl-CoA dehydrogenase activity
LIS44_07605	COG0583	DNA-binding transcription factor activity
LIS44_07610	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIS44_07640	COG3122	Protein conserved in bacteria
LIS44_07650	COG0415	Belongs to the DNA photolyase family
LIS44_07660	COG1132	(ABC) transporter
LIS44_07690	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LIS44_07695	COG1448	Aminotransferase
LIS44_07700	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
LIS44_07740	COG1960	acyl-CoA dehydrogenase activity
LIS44_07750	COG1525	nuclease
LIS44_07765	COG2814	Major facilitator Superfamily
LIS44_07785	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIS44_07820	COG0583	DNA-binding transcription factor activity
LIS44_07845	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LIS44_07895	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LIS44_07910	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIS44_07915	COG2207	Transcriptional regulator
LIS44_07920	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LIS44_07995	COG1960	acyl-CoA dehydrogenase activity
LIS44_08000	COG1960	acyl-CoA dehydrogenase activity
LIS44_08010	COG0693	protein deglycase activity
LIS44_08020	COG0741	lytic transglycosylase activity
LIS44_08020	COG0739	heme binding
LIS44_08020	COG1196	nuclear chromosome segregation
LIS44_08065	COG0552	protein localization to endoplasmic reticulum
LIS44_08105	COG0133	tryptophan synthase activity
LIS44_08115	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIS44_08135	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LIS44_08190	COG4890	Cyd operon protein YbgT
LIS44_08205	COG0772	Belongs to the SEDS family
LIS44_08220	COG0148	phosphopyruvate hydratase activity
LIS44_08250	COG0372	Belongs to the citrate synthase family
LIS44_08285	COG4372	Transposase
LIS44_08300	COG0542	response to heat
LIS44_08305	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LIS44_08330	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LIS44_08340	COG0569	domain protein
LIS44_08365	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIS44_08390	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIS44_08395	COG0776	regulation of translation
LIS44_08420	COG0822	iron-sulfur transferase activity
LIS44_08425	COG0316	Belongs to the HesB IscA family
LIS44_08465	COG1027	Aspartate ammonia-lyase
LIS44_08480	COG0506	proline dehydrogenase activity
LIS44_08480	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LIS44_08480	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LIS44_08530	COG3781	membrane
LIS44_08535	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LIS44_08545	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LIS44_08560	COG0697	spore germination
LIS44_08585	COG0424	maF-like protein
LIS44_08590	COG2850	peptidyl-arginine hydroxylation
LIS44_08610	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LIS44_08635	COG1011	Hydrolase
LIS44_08640	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LIS44_08645	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LIS44_08650	COG2137	regulation of response to DNA damage stimulus
LIS44_08665	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LIS44_08675	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LIS44_08685	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LIS44_08700	COG0575	Belongs to the CDS family
LIS44_08705	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LIS44_08725	COG3852	Histidine kinase
LIS44_08730	COG2204	response regulator
LIS44_08740	COG2814	Major facilitator Superfamily
LIS44_08745	COG0445	tRNA wobble uridine modification
LIS44_08770	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LIS44_08775	COG0138	bifunctional purine biosynthesis protein purh
LIS44_08780	COG0151	Belongs to the GarS family
LIS44_08790	COG1464	Belongs to the NlpA lipoprotein family
LIS44_08795	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LIS44_08800	COG2011	ABC-type metal ion transport system permease component
LIS44_08830	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LIS44_08835	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
LIS44_08845	COG4122	O-methyltransferase activity
LIS44_08850	COG0589	response to stress
LIS44_08870	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LIS44_08880	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LIS44_08885	COG0517	IMP dehydrogenase activity
LIS44_08885	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LIS44_08915	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
LIS44_08920	COG4149	molybdate abc transporter
LIS44_08925	COG0725	ABC transporter, periplasmic molybdate-binding protein
LIS44_08930	COG0303	'Molybdopterin
LIS44_08935	COG0315	cyclic pyranopterin monophosphate synthase activity
LIS44_08935	COG0521	Mo-molybdopterin cofactor biosynthetic process
LIS44_08940	COG0314	molybdopterin synthase activity
LIS44_08950	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LIS44_08960	COG0243	molybdopterin cofactor binding
LIS44_08965	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIS44_08970	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIS44_08975	COG2223	nitrite transmembrane transporter activity
LIS44_08985	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIS44_08985	COG1116	anion transmembrane transporter activity
LIS44_08995	COG1454	alcohol dehydrogenase
LIS44_09015	COG0519	Catalyzes the synthesis of GMP from XMP
LIS44_09015	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LIS44_09060	COG1280	lysine exporter protein (LysE YggA)
LIS44_09080	COG1254	Belongs to the acylphosphatase family
LIS44_09085	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LIS44_09085	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LIS44_09120	COG1401	restriction endodeoxyribonuclease activity
LIS44_09165	COG4221	oxidoreductase activity
LIS44_09215	COG0582	viral genome integration into host DNA
LIS44_09245	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LIS44_09250	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIS44_09295	COG4372	Transposase
LIS44_09310	COG0582	viral genome integration into host DNA
LIS44_09315	COG2963	transposase activity
LIS44_09325	COG4372	Transposase
LIS44_09330	COG0582	viral genome integration into host DNA
LIS44_09405	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
LIS44_09415	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
LIS44_09485	COG0582	viral genome integration into host DNA
LIS44_09555	COG1464	Belongs to the NlpA lipoprotein family
LIS44_09565	COG2011	ABC-type metal ion transport system permease component
LIS44_09570	COG0012	GTP binding
LIS44_09595	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LIS44_09620	COG0386	Belongs to the glutathione peroxidase family
LIS44_09625	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIS44_09630	COG0436	Aminotransferase
LIS44_09635	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
LIS44_09635	COG2755	lipolytic protein G-D-S-L family
LIS44_09680	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIS44_09690	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LIS44_09730	COG0730	response to heat
LIS44_09735	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIS44_09740	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LIS44_09755	COG4716	Myosin-crossreactive antigen
LIS44_09790	COG0405	Gamma-glutamyltransferase
LIS44_09820	COG3177	Filamentation induced by cAMP protein fic
LIS44_09905	COG1131	(ABC) transporter
LIS44_09910	COG0842	Transport permease protein
LIS44_09925	COG2951	lytic endotransglycosylase activity
LIS44_09950	COG0052	Belongs to the universal ribosomal protein uS2 family
LIS44_09955	COG0024	Methionine aminopeptidase
LIS44_09965	COG0436	Aminotransferase
LIS44_10005	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIS44_10010	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LIS44_10015	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LIS44_10080	COG0583	DNA-binding transcription factor activity
LIS44_10085	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LIS44_10100	COG0174	glutamine synthetase
LIS44_10105	COG0512	Glutamine amidotransferase of anthranilate synthase
LIS44_10110	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LIS44_10125	COG0302	gtp cyclohydrolase
LIS44_10150	COG3739	integral membrane protein
LIS44_10165	COG1741	Belongs to the pirin family
LIS44_10180	COG0583	DNA-binding transcription factor activity
LIS44_10210	COG3335	DDE superfamily endonuclease
LIS44_10230	COG1294	oxidase, subunit
LIS44_10235	COG1271	oxidase subunit
LIS44_10275	COG1902	pentaerythritol trinitrate reductase activity
LIS44_10275	COG0446	pyridine nucleotide-disulphide oxidoreductase
LIS44_10280	COG0277	FAD linked oxidase domain protein
LIS44_10290	COG2186	Transcriptional regulator
LIS44_10305	COG5001	Diguanylate cyclase
LIS44_10305	COG4251	negative regulation of phosphorylation
LIS44_10305	COG3706	GGDEF domain
LIS44_10305	COG2203	Gaf domain
LIS44_10330	COG0833	amino acid
LIS44_10355	COG4172	Belongs to the ABC transporter superfamily
LIS44_10360	COG4239	(ABC) transporter, permease
LIS44_10365	COG4174	ABC transporter (Permease)
LIS44_10370	COG4166	transmembrane transport
LIS44_10375	COG0741	lytic transglycosylase activity
LIS44_10375	COG1388	LysM domain
LIS44_10380	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LIS44_10390	COG2816	NAD+ diphosphatase activity
LIS44_10405	COG0792	nuclease activity
LIS44_10425	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LIS44_10430	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LIS44_10435	COG2155	Conserved Protein
LIS44_10475	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LIS44_10495	COG3384	dioxygenase
LIS44_10510	COG2878	Part of a membrane complex involved in electron transport
LIS44_10515	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LIS44_10540	COG0768	penicillin binding
LIS44_10545	COG0742	ribosomal rna small subunit methyltransferase
LIS44_10650	COG5295	Hep Hag repeat protein
LIS44_10665	COG0459	protein refolding
LIS44_10680	COG1597	lipid kinase activity
LIS44_10710	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LIS44_10735	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LIS44_10735	COG3321	synthase
LIS44_10735	COG0604	alcohol dehydrogenase
LIS44_10735	COG4221	oxidoreductase activity
LIS44_10745	COG3118	belongs to the thioredoxin family
LIS44_10765	COG1695	Transcriptional regulator
LIS44_10800	COG1649	PFAM Uncharacterised BCR, COG1649
LIS44_10800	COG0726	polysaccharide deacetylase
LIS44_10810	COG1215	transferase activity, transferring glycosyl groups
LIS44_10815	COG1649	PFAM Uncharacterised BCR, COG1649
LIS44_10815	COG0726	polysaccharide deacetylase
LIS44_10825	COG0675	Transposase, IS605 OrfB family
LIS44_10830	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LIS44_10840	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIS44_10855	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LIS44_10860	COG1053	succinate dehydrogenase
LIS44_10865	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LIS44_10920	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LIS44_10930	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LIS44_10945	COG0564	pseudouridine synthase activity
LIS44_10955	COG0358	DNA primase activity
LIS44_10970	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LIS44_11000	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LIS44_11020	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIS44_11040	COG0586	Pfam SNARE associated Golgi protein
LIS44_11060	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LIS44_11070	COG0321	lipoyl(octanoyl) transferase activity
LIS44_11085	COG0531	amino acid
LIS44_11090	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LIS44_11095	COG1648	precorrin-2 dehydrogenase activity
LIS44_11095	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LIS44_11100	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LIS44_11110	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LIS44_11120	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LIS44_11150	COG1538	Outer membrane efflux protein
LIS44_11155	COG0393	Putative heavy-metal-binding
LIS44_11160	COG0393	Putative heavy-metal-binding
LIS44_11165	COG1028	Short-chain dehydrogenase reductase Sdr
LIS44_11175	COG0525	valine-tRNA ligase activity
LIS44_11185	COG2852	Protein conserved in bacteria
LIS44_11190	COG3328	transposase activity
LIS44_11200	COG2323	membrane
LIS44_11210	COG0765	amino acid transport
LIS44_11215	COG0765	amino acid transport
LIS44_11220	COG1126	abc transporter atp-binding protein
LIS44_11225	COG0004	ammonium transporteR
LIS44_11240	COG0642	Histidine kinase
LIS44_11270	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIS44_11285	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIS44_11290	COG0142	geranyltranstransferase activity
LIS44_11295	COG2828	Protein conserved in bacteria
LIS44_11300	COG1113	amino acid transport
LIS44_11330	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LIS44_11340	COG1530	ribonuclease E activity
LIS44_11345	COG0424	maF-like protein
LIS44_11360	COG1077	Cell shape determining protein MreB Mrl
LIS44_11365	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LIS44_11375	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LIS44_11415	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
LIS44_11450	COG2203	Gaf domain
LIS44_11450	COG3706	GGDEF domain
LIS44_11450	COG4251	negative regulation of phosphorylation
LIS44_11450	COG5001	Diguanylate cyclase
LIS44_11460	COG0420	3'-5' exonuclease activity
LIS44_11490	COG0735	belongs to the Fur family
LIS44_11495	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LIS44_11500	COG2914	Belongs to the UPF0125 (RnfH) family
LIS44_11515	COG0121	glutamine amidotransferase
LIS44_11530	COG0756	dUTP diphosphatase activity
LIS44_11540	COG2885	chlorophyll binding
LIS44_11545	COG0204	Acyl-transferase
LIS44_11555	COG0850	regulation of cytokinetic process
LIS44_11580	COG1674	ftsk spoiiie
LIS44_11585	COG0492	ferredoxin-NADP+ reductase activity
LIS44_11590	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LIS44_11600	COG0456	acetyltransferase
LIS44_11630	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LIS44_11645	COG1981	membrane
LIS44_11650	COG1113	amino acid transport
LIS44_11655	COG0251	oxidation-reduction process
LIS44_11665	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIS44_11680	COG0352	thiamine-phosphate diphosphorylase activity
LIS44_11680	COG0351	phosphomethylpyrimidine kinase
LIS44_11680	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LIS44_11685	COG3422	double-strand break repair
LIS44_11695	COG2824	Alkylphosphonate utilization operon protein PhnA
LIS44_11710	COG0753	catalase activity
LIS44_11725	COG0564	pseudouridine synthase activity
LIS44_11805	COG1902	pentaerythritol trinitrate reductase activity
LIS44_11820	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIS44_11825	COG1970	mechanosensitive ion channel activity
LIS44_11830	COG1217	gtp-binding protein TYPA
LIS44_11835	COG2233	PERMEase
LIS44_11845	COG0833	amino acid
LIS44_11865	COG0183	Belongs to the thiolase family
LIS44_11880	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIS44_11895	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LIS44_11900	COG2207	Transcriptional regulator
LIS44_11905	COG0183	Belongs to the thiolase family
LIS44_11910	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIS44_11910	COG1024	Enoyl-CoA hydratase
LIS44_11930	COG1272	protein, Hemolysin III
LIS44_11935	COG0477	Major facilitator Superfamily
LIS44_11945	COG1408	metallophosphoesterase
LIS44_11950	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIS44_11960	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LIS44_11995	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LIS44_12000	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LIS44_12005	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LIS44_12010	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LIS44_12015	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LIS44_12020	COG0625	glutathione transferase activity
LIS44_12025	COG2969	positive regulation of protein catabolic process
LIS44_12060	COG2853	Lipoprotein
LIS44_12075	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIS44_12120	COG0037	tRNA processing
LIS44_12155	COG0072	phenylalanine-tRNA ligase activity
LIS44_12170	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LIS44_12175	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LIS44_12180	COG1162	GTPase activity
LIS44_12210	COG0084	hydrolase, TatD family'
LIS44_12225	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LIS44_12245	COG0793	Belongs to the peptidase S41A family
LIS44_12275	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LIS44_12280	COG0857	belongs to the CobB CobQ family
LIS44_12280	COG0280	phosphate acetyltransferase
LIS44_12285	COG4106	trans-aconitate 2-methyltransferase activity
LIS44_12290	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
LIS44_12290	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
LIS44_12305	COG0740	serine-type endopeptidase activity
LIS44_12315	COG4774	siderophore transport
LIS44_12325	COG4774	siderophore transport
LIS44_12330	COG3128	pkhd-type hydroxylase
LIS44_12340	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIS44_12345	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LIS44_12350	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LIS44_12350	COG2813	Specifically methylates the guanine in position
LIS44_12430	COG1238	metal cluster binding
LIS44_12440	COG0625	glutathione transferase activity
LIS44_12460	COG0318	PFAM AMP-dependent synthetase and ligase
LIS44_12465	COG3028	Belongs to the UPF0307 family
LIS44_12470	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS44_12475	COG1660	Displays ATPase and GTPase activities
LIS44_12480	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LIS44_12490	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LIS44_12495	COG0617	tRNA 3'-terminal CCA addition
LIS44_12500	COG1555	photosystem II stabilization
LIS44_12505	COG3956	TIGRFAM MazG family protein
LIS44_12525	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LIS44_12545	COG1426	Protein conserved in bacteria
LIS44_12620	COG0028	Belongs to the TPP enzyme family
LIS44_12650	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIS44_12655	COG0577	efflux transmembrane transporter activity
LIS44_12655	COG1136	(ABC) transporter
LIS44_12675	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LIS44_12710	COG0788	formyltetrahydrofolate deformylase activity
LIS44_12735	COG4651	solute:proton antiporter activity
LIS44_12735	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LIS44_12760	COG1929	Belongs to the glycerate kinase type-1 family
LIS44_12800	COG2900	Belongs to the SlyX family
LIS44_12805	COG0488	(ABC) transporter
LIS44_12810	COG1560	Kdo2-lipid A biosynthetic process
LIS44_12845	COG0252	asparaginase activity
LIS44_12870	COG0473	3-isopropylmalate dehydrogenase activity
LIS44_12885	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LIS44_12935	COG1960	acyl-CoA dehydrogenase activity
LIS44_12955	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
LIS44_12980	COG0446	pyridine nucleotide-disulphide oxidoreductase
LIS44_12985	COG3384	dioxygenase
LIS44_12990	COG1028	Short-chain dehydrogenase reductase Sdr
LIS44_13005	COG4638	Rieske (2fe-2S)
LIS44_13010	COG0583	DNA-binding transcription factor activity
LIS44_13035	COG4569	acetaldehyde dehydrogenase (acetylating) activity
LIS44_13040	COG3971	2-oxopent-4-enoate hydratase activity
LIS44_13050	COG0546	phosphoglycolate phosphatase activity
LIS44_13055	COG0564	pseudouridine synthase activity
LIS44_13065	COG0318	PFAM AMP-dependent synthetase and ligase
LIS44_13095	COG1983	PspC domain protein
LIS44_13100	COG0517	IMP dehydrogenase activity
LIS44_13110	COG0751	glycine-tRNA ligase activity
LIS44_13165	COG0493	'glutamate synthase
LIS44_13175	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
LIS44_13185	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIS44_13200	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LIS44_13210	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
LIS44_13210	COG0644	oxidoreductase
LIS44_13215	COG0425	Belongs to the sulfur carrier protein TusA family
LIS44_13220	COG4535	Mg2 and Co2 transporter CorC
LIS44_13225	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LIS44_13255	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LIS44_13275	COG0789	Transcriptional regulator
LIS44_13285	COG0598	Magnesium transport protein CorA
LIS44_13300	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LIS44_13305	COG1074	ATP-dependent DNA helicase activity
LIS44_13340	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LIS44_13370	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LIS44_13390	COG2111	Na H antiporter
LIS44_13390	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LIS44_13395	COG1006	Multisubunit Na H antiporter MnhC subunit
LIS44_13410	COG2212	antiporter activity
LIS44_13415	COG1320	monovalent cation:proton antiporter activity
LIS44_13420	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LIS44_13425	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LIS44_13430	COG0195	Participates in both transcription termination and antitermination
LIS44_13485	COG0237	dephospho-CoA kinase activity
LIS44_13495	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIS44_13500	COG3123	guanosine phosphorylase activity
LIS44_13505	COG0497	DNA recombination
LIS44_13515	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LIS44_13580	COG0494	nUDIX hydrolase
LIS44_13585	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LIS44_13590	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LIS44_13595	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LIS44_13605	COG0772	Belongs to the SEDS family
LIS44_13630	COG4974	Belongs to the 'phage' integrase family
LIS44_13635	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LIS44_13645	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LIS44_13680	COG0795	lipopolysaccharide-transporting ATPase activity
LIS44_13685	COG0795	lipopolysaccharide-transporting ATPase activity
LIS44_13705	COG0586	Pfam SNARE associated Golgi protein
LIS44_13720	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIS44_13720	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIS44_13745	COG0606	chelatase, subunit chli
LIS44_13765	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LIS44_13780	COG0318	PFAM AMP-dependent synthetase and ligase
LIS44_13790	COG0477	Major facilitator Superfamily
LIS44_13795	COG2860	membrane
LIS44_13800	COG3012	SEC-C Motif Domain Protein
LIS44_13805	COG1253	flavin adenine dinucleotide binding
LIS44_13905	COG0758	DNA mediated transformation
LIS44_13915	COG0697	spore germination
LIS44_14020	COG1121	(ABC) transporter
LIS44_14025	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LIS44_14030	COG1683	Conserved Protein
LIS44_14045	COG2837	iron assimilation
LIS44_14060	COG0436	Aminotransferase
LIS44_14065	COG0534	Mate efflux family protein
LIS44_14075	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIS44_14080	COG1116	anion transmembrane transporter activity
LIS44_14105	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIS44_14110	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIS44_14140	COG3385	transposase activity
LIS44_14190	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LIS44_14190	COG0519	Catalyzes the synthesis of GMP from XMP
LIS44_14220	COG1192	Involved in chromosome partitioning
LIS44_14230	COG0271	Belongs to the BolA IbaG family
LIS44_14265	COG3756	Protein conserved in bacteria
LIS44_14415	COG1337	RAMP superfamily
LIS44_14445	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LIS44_14470	COG1518	maintenance of DNA repeat elements
LIS44_14495	COG3550	peptidyl-serine autophosphorylation
LIS44_14610	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LIS44_14625	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LIS44_14635	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LIS44_14645	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIS44_14660	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LIS44_14675	COG0438	transferase activity, transferring glycosyl groups
LIS44_14690	COG1045	serine acetyltransferase
LIS44_14720	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIS44_14730	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LIS44_14740	COG0438	transferase activity, transferring glycosyl groups
LIS44_14745	COG0438	transferase activity, transferring glycosyl groups
LIS44_14750	COG0438	transferase activity, transferring glycosyl groups
LIS44_14775	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LIS44_14780	COG1596	polysaccharide export
LIS44_14815	COG1194	a g-specific adenine glycosylase
LIS44_14830	COG2818	Glycosylase
LIS44_14835	COG1064	alcohol dehydrogenase
LIS44_14875	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIS44_14890	COG2233	PERMEase
LIS44_14910	COG0129	dihydroxy-acid dehydratase activity
LIS44_14915	COG3385	transposase activity
LIS44_14930	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LIS44_14950	COG0733	neurotransmitter:sodium symporter activity
LIS44_15000	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LIS44_15010	COG0657	acetylesterase activity
LIS44_15065	COG0488	(ABC) transporter
LIS44_15085	COG1230	cation diffusion facilitator family transporter
LIS44_15110	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LIS44_15115	COG0594	ribonuclease P activity
LIS44_15135	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
LIS44_15140	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LIS44_15145	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LIS44_15155	COG0659	secondary active sulfate transmembrane transporter activity
LIS44_15245	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
LIS44_15315	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LIS44_15320	COG2026	Addiction module toxin, RelE StbE family
LIS44_15355	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
LIS44_15395	COG0732	type I restriction modification DNA specificity domain
LIS44_15415	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LIS44_15430	COG2433	Pfam Transposase IS66
LIS44_15470	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
LIS44_15490	COG2855	membrane
LIS44_15495	COG0583	DNA-binding transcription factor activity
LIS44_15510	COG4716	Myosin-crossreactive antigen
LIS44_15585	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LIS44_15605	COG2369	cell adhesion
LIS44_15640	COG3243	poly(R)-hydroxyalkanoic acid synthase
LIS44_15645	COG0183	Belongs to the thiolase family
LIS44_15650	COG0737	Belongs to the 5'-nucleotidase family
LIS44_15675	COG3046	protein related to deoxyribodipyrimidine photolyase
LIS44_15715	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LIS44_15780	COG4372	Transposase
LIS44_15790	COG2963	transposase activity
LIS44_15800	COG3040	lipid binding
LIS44_15820	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LIS44_15835	COG0642	Histidine kinase
LIS44_15860	COG0675	Transposase, IS605 OrfB family
LIS44_15890	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LIS44_15915	COG2801	Transposase and inactivated derivatives
LIS44_15940	COG2433	Pfam Transposase IS66
LIS44_16015	COG4566	intracellular signal transduction
LIS44_16025	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIS44_16030	COG4569	acetaldehyde dehydrogenase (acetylating) activity
LIS44_16035	COG3971	2-oxopent-4-enoate hydratase activity
LIS44_16040	COG0346	lactoylglutathione lyase activity
LIS44_16070	COG2267	carboxylic ester hydrolase activity
LIS44_16090	COG0842	Transport permease protein
LIS44_16095	COG1129	ABC transporter
LIS44_16095	COG0842	Transport permease protein
LIS44_16100	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIS44_16110	COG5001	Diguanylate cyclase
LIS44_16130	COG1192	Involved in chromosome partitioning
LIS44_16135	COG1475	DNA binding
LIS44_16155	COG1022	Amp-dependent synthetase and ligase
LIS44_16170	COG0300	oxidoreductase activity
LIS44_16175	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIS44_16200	COG3188	usher protein
LIS44_16210	COG3121	Chaperone
LIS44_16235	COG0589	response to stress
LIS44_16240	COG0640	Transcriptional regulator
LIS44_16250	COG0798	PFAM Bile acid sodium symporter
LIS44_16255	COG0431	NADPH-dependent FMN reductase
LIS44_16260	COG2072	flavoprotein involved in K transport
LIS44_16335	COG0675	Transposase, IS605 OrfB family
LIS44_16355	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LIS44_16360	COG3293	Transposase
LIS44_16370	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIS44_16375	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LIS44_16380	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LIS44_16380	COG4451	ribulose bisphosphate carboxylase, small
LIS44_16385	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LIS44_16395	COG0735	belongs to the Fur family
LIS44_16410	COG0523	cobalamin synthesis protein
LIS44_16430	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIS44_16485	COG1271	oxidase subunit
LIS44_16490	COG1294	oxidase, subunit
LIS44_16500	COG0446	pyridine nucleotide-disulphide oxidoreductase
LIS44_16545	COG0450	alkyl hydroperoxide reductase
LIS44_16565	COG1136	(ABC) transporter
LIS44_16585	COG1981	membrane
LIS44_16675	COG0745	RESPONSE REGULATOR receiver
LIS44_16680	COG0642	Histidine kinase
LIS44_16685	COG0783	Belongs to the Dps family
LIS44_16735	COG0730	response to heat
LIS44_16770	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIS44_16775	COG1129	ABC transporter
LIS44_16775	COG0842	Transport permease protein
LIS44_16780	COG0842	Transport permease protein