locus-tag class description FK538_00010 PF03432 Relaxase/Mobilisation nuclease domain FK538_00045 PF00872 Transposase, Mutator family FK538_00085 PF04221 RelB antitoxin FK538_00090 PF08299 Bacterial dnaA protein helix-turn-helix FK538_00090 PF11638 DnaA N-terminal domain FK538_00090 PF00308 Bacterial dnaA protein FK538_00095 PF00712 DNA polymerase III beta subunit, N-terminal domain FK538_00095 PF02768 DNA polymerase III beta subunit, C-terminal domain FK538_00095 PF02767 DNA polymerase III beta subunit, central domain FK538_00100 PF02463 RecF/RecN/SMC N terminal domain FK538_00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_00105 PF18053 DNA gyrase B subunit insert domain FK538_00105 PF00986 DNA gyrase B subunit, carboxyl terminus FK538_00105 PF00204 DNA gyrase B FK538_00105 PF01751 Toprim domain FK538_00130 PF00005 ABC transporter FK538_00130 PF12848 ABC transporter FK538_00150 PF01521 Iron-sulphur cluster biosynthesis FK538_00155 PF03702 Anhydro-N-acetylmuramic acid kinase FK538_00160 PF00579 tRNA synthetases class I (W and Y) FK538_00185 PF00149 Calcineurin-like phosphoesterase FK538_00185 PF02872 5'-nucleotidase, C-terminal domain FK538_00215 PF07690 Major Facilitator Superfamily FK538_00225 PF00171 Aldehyde dehydrogenase family FK538_00230 PF00209 Sodium:neurotransmitter symporter family FK538_00240 PF01029 NusB family FK538_00240 PF01189 16S rRNA methyltransferase RsmB/F FK538_00245 PF00551 Formyl transferase FK538_00245 PF02911 Formyl transferase, C-terminal domain FK538_00250 PF00920 Dehydratase family FK538_00260 PF00920 Dehydratase family FK538_00275 PF00860 Permease family FK538_00280 PF00311 Phosphoenolpyruvate carboxylase FK538_00285 PF00440 Bacterial regulatory proteins, tetR family FK538_00290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK538_00295 PF00873 AcrB/AcrD/AcrF family FK538_00305 PF00684 DnaJ central domain FK538_00305 PF01556 DnaJ C terminal domain FK538_00305 PF00226 DnaJ domain FK538_00315 PF05173 Dihydrodipicolinate reductase, C-terminus FK538_00315 PF01113 Dihydrodipicolinate reductase, N-terminus FK538_00325 PF14052 Capsule assembly protein Wzi FK538_00330 PF02706 Chain length determinant protein FK538_00330 PF13807 G-rich domain on putative tyrosine kinase FK538_00330 PF13614 AAA domain FK538_00335 PF01451 Low molecular weight phosphotyrosine protein phosphatase FK538_00340 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FK538_00340 PF02563 Polysaccharide biosynthesis/export protein FK538_00340 PF10531 SLBB domain FK538_00345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FK538_00345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FK538_00345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FK538_00350 PF01370 NAD dependent epimerase/dehydratase family FK538_00360 PF13439 Glycosyltransferase Family 4 FK538_00360 PF00534 Glycosyl transferases group 1 FK538_00365 PF01501 Glycosyl transferase family 8 FK538_00365 PF00535 Glycosyl transferase family 2 FK538_00375 PF00534 Glycosyl transferases group 1 FK538_00375 PF13439 Glycosyltransferase Family 4 FK538_00380 PF01370 NAD dependent epimerase/dehydratase family FK538_00385 PF00953 Glycosyl transferase family 4 FK538_00395 PF02719 Polysaccharide biosynthesis protein FK538_00400 PF00483 Nucleotidyl transferase FK538_00405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FK538_00405 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FK538_00405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FK538_00410 PF00342 Phosphoglucose isomerase FK538_00415 PF16363 GDP-mannose 4,6 dehydratase FK538_00420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FK538_00420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FK538_00420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FK538_00420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FK538_00430 PF06527 TniQ FK538_00430 PF15978 Tn7-like transposition protein D FK538_00435 PF13401 AAA domain FK538_00435 PF11426 Tn7 transposition regulator TnsC FK538_00440 PF00665 Integrase core domain FK538_00450 PF01380 SIS domain FK538_00455 PF14602 Hexapeptide repeat of succinyl-transferase FK538_00455 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_00455 PF12804 MobA-like NTP transferase domain FK538_00460 PF04608 Phosphatidylglycerophosphatase A FK538_00465 PF00586 AIR synthase related protein, N-terminal domain FK538_00465 PF02769 AIR synthase related protein, C-terminal domain FK538_00470 PF01029 NusB family FK538_00475 PF00885 6,7-dimethyl-8-ribityllumazine synthase FK538_00480 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FK538_00480 PF00925 GTP cyclohydrolase II FK538_00495 PF01722 BolA-like protein FK538_00505 PF13614 AAA domain FK538_00520 PF09335 SNARE associated Golgi protein FK538_00525 PF07681 DoxX FK538_00530 PF00117 Glutamine amidotransferase class-I FK538_00530 PF00958 GMP synthase C terminal domain FK538_00530 PF02540 NAD synthase FK538_00535 PF00990 Diguanylate cyclase, GGDEF domain FK538_00535 PF00072 Response regulator receiver domain FK538_00540 PF05726 Pirin C-terminal cupin domain FK538_00540 PF02678 Pirin FK538_00555 PF03485 Arginyl tRNA synthetase N terminal domain FK538_00555 PF00750 tRNA synthetases class I (R) FK538_00555 PF05746 DALR anticodon binding domain FK538_00570 PF03949 Malic enzyme, NAD binding domain FK538_00570 PF00390 Malic enzyme, N-terminal domain FK538_00575 PF04717 Type VI secretion system, phage-baseplate injector FK538_00580 PF00182 Chitinase class I FK538_00600 PF04261 Dyp-type peroxidase family FK538_00605 PF01810 LysE type translocator FK538_00610 PF00950 ABC 3 transport family FK538_00615 PF00005 ABC transporter FK538_00635 PF00119 ATP synthase A chain FK538_00640 PF00137 ATP synthase subunit C FK538_00645 PF00430 ATP synthase B/B' CF(0) FK538_00650 PF00213 ATP synthase delta (OSCP) subunit FK538_00655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FK538_00655 PF00306 ATP synthase alpha/beta chain, C terminal domain FK538_00655 PF02874 ATP synthase alpha/beta family, beta-barrel domain FK538_00660 PF00231 ATP synthase FK538_00665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FK538_00665 PF02874 ATP synthase alpha/beta family, beta-barrel domain FK538_00670 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FK538_00675 PF11008 Protein of unknown function (DUF2846) FK538_00680 PF02678 Pirin FK538_00680 PF05726 Pirin C-terminal cupin domain FK538_00690 PF00255 Glutathione peroxidase FK538_00695 PF00892 EamA-like transporter family FK538_00705 PF01300 Telomere recombination FK538_00710 PF17782 DprA winged helix domain FK538_00710 PF02481 DNA recombination-mediator protein A FK538_00720 PF01327 Polypeptide deformylase FK538_00760 PF07690 Major Facilitator Superfamily FK538_00765 PF11842 Domain of unknown function (DUF3362) FK538_00765 PF04055 Radical SAM superfamily FK538_00765 PF08497 Radical SAM N-terminal FK538_00785 PF00817 impB/mucB/samB family FK538_00785 PF11798 IMS family HHH motif FK538_00785 PF11799 impB/mucB/samB family C-terminal domain FK538_00800 PF07690 Major Facilitator Superfamily FK538_00815 PF03641 Possible lysine decarboxylase FK538_00820 PF03471 Transporter associated domain FK538_00820 PF03741 Integral membrane protein TerC family FK538_00820 PF00571 CBS domain FK538_00825 PF02810 SEC-C motif FK538_00830 PF03458 UPF0126 domain FK538_00835 PF07690 Major Facilitator Superfamily FK538_00840 PF03989 DNA gyrase C-terminal domain, beta-propeller FK538_00840 PF00521 DNA gyrase/topoisomerase IV, subunit A FK538_00845 PF00501 AMP-binding enzyme FK538_00845 PF13193 AMP-binding enzyme C-terminal domain FK538_00860 PF00719 Inorganic pyrophosphatase FK538_00865 PF03573 outer membrane porin, OprD family FK538_00875 PF01078 Magnesium chelatase, subunit ChlI FK538_00875 PF13335 Magnesium chelatase, subunit ChlI C-terminal FK538_00885 PF00543 Nitrogen regulatory protein P-II FK538_00890 PF00909 Ammonium Transporter Family FK538_00895 PF03477 ATP cone domain FK538_00900 PF01872 RibD C-terminal domain FK538_00900 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FK538_00910 PF00677 Lumazine binding domain FK538_00915 PF09335 SNARE associated Golgi protein FK538_00935 PF02789 Cytosol aminopeptidase family, N-terminal domain FK538_00935 PF00883 Cytosol aminopeptidase family, catalytic domain FK538_00940 PF03739 Lipopolysaccharide export system permease LptF/LptG FK538_00945 PF03739 Lipopolysaccharide export system permease LptF/LptG FK538_00950 PF01676 Metalloenzyme superfamily FK538_00950 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FK538_00955 PF00595 PDZ domain FK538_00955 PF03572 Peptidase family S41 FK538_00960 PF00072 Response regulator receiver domain FK538_00960 PF00158 Sigma-54 interaction domain FK538_00960 PF02954 Bacterial regulatory protein, Fis family FK538_00965 PF00512 His Kinase A (phospho-acceptor) domain FK538_00965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_00970 PF00196 Bacterial regulatory proteins, luxR family FK538_00970 PF00072 Response regulator receiver domain FK538_00975 PF00768 D-alanyl-D-alanine carboxypeptidase FK538_00980 PF00291 Pyridoxal-phosphate dependent enzyme FK538_00985 PF03447 Homoserine dehydrogenase, NAD binding domain FK538_00985 PF00742 Homoserine dehydrogenase FK538_00985 PF01842 ACT domain FK538_00990 PF13098 Thioredoxin-like domain FK538_00990 PF10411 Disulfide bond isomerase protein N-terminus FK538_00995 PF02899 Phage integrase, N-terminal SAM-like domain FK538_00995 PF00589 Phage integrase family FK538_01005 PF07664 Ferrous iron transport protein B C terminus FK538_01005 PF02421 Ferrous iron transport protein B FK538_01005 PF07670 Nucleoside recognition FK538_01015 PF08245 Mur ligase middle domain FK538_01015 PF02875 Mur ligase family, glutamate ligase domain FK538_01020 PF01098 Cell cycle protein FK538_01030 PF00749 tRNA synthetases class I (E and Q), catalytic domain FK538_01035 PF01258 Prokaryotic dksA/traR C4-type zinc finger FK538_01040 PF00149 Calcineurin-like phosphoesterase FK538_01045 PF00293 NUDIX domain FK538_01050 PF13667 ThiC-associated domain FK538_01050 PF01964 Radical SAM ThiC family FK538_01065 PF01895 PhoU domain FK538_01070 PF04362 Bacterial Fe(2+) trafficking FK538_01075 PF14698 Argininosuccinate lyase C-terminal FK538_01075 PF00206 Lyase FK538_01080 PF06580 Histidine kinase FK538_01080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_01080 PF07694 5TMR of 5TMR-LYT FK538_01085 PF04397 LytTr DNA-binding domain FK538_01085 PF00072 Response regulator receiver domain FK538_01090 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FK538_01090 PF03900 Porphobilinogen deaminase, C-terminal domain FK538_01110 PF03061 Thioesterase superfamily FK538_01115 PF00816 H-NS histone family FK538_01130 PF00263 Bacterial type II and III secretion system protein FK538_01130 PF03958 Bacterial type II/III secretion system short domain FK538_01135 PF16697 Inner membrane component of T3SS, cytoplasmic domain FK538_01140 PF13419 Haloacid dehalogenase-like hydrolase FK538_01145 PF00425 chorismate binding enzyme FK538_01145 PF04715 Anthranilate synthase component I, N terminal region FK538_01170 PF03144 Elongation factor Tu domain 2 FK538_01170 PF00009 Elongation factor Tu GTP binding domain FK538_01170 PF03143 Elongation factor Tu C-terminal domain FK538_01180 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FK538_01185 PF02357 Transcription termination factor nusG FK538_01185 PF00467 KOW motif FK538_01190 PF00298 Ribosomal protein L11, RNA binding domain FK538_01190 PF03946 Ribosomal protein L11, N-terminal domain FK538_01195 PF00687 Ribosomal protein L1p/L10e family FK538_01200 PF00466 Ribosomal protein L10 FK538_01205 PF00542 Ribosomal protein L7/L12 C-terminal domain FK538_01205 PF16320 Ribosomal protein L7/L12 dimerisation domain FK538_01210 PF04560 RNA polymerase Rpb2, domain 7 FK538_01210 PF04561 RNA polymerase Rpb2, domain 2 FK538_01210 PF00562 RNA polymerase Rpb2, domain 6 FK538_01210 PF04563 RNA polymerase beta subunit FK538_01210 PF04565 RNA polymerase Rpb2, domain 3 FK538_01210 PF10385 RNA polymerase beta subunit external 1 domain FK538_01215 PF04998 RNA polymerase Rpb1, domain 5 FK538_01215 PF05000 RNA polymerase Rpb1, domain 4 FK538_01215 PF04997 RNA polymerase Rpb1, domain 1 FK538_01215 PF00623 RNA polymerase Rpb1, domain 2 FK538_01215 PF04983 RNA polymerase Rpb1, domain 3 FK538_01230 PF00561 alpha/beta hydrolase fold FK538_01235 PF03553 Na+/H+ antiporter family FK538_01235 PF13726 Na+-H+ antiporter family FK538_01250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_01250 PF00183 Hsp90 protein FK538_01275 PF01323 DSBA-like thioredoxin domain FK538_01285 PF00860 Permease family FK538_01290 PF02803 Thiolase, C-terminal domain FK538_01290 PF00108 Thiolase, N-terminal domain FK538_01295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FK538_01295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FK538_01295 PF00378 Enoyl-CoA hydratase/isomerase FK538_01310 PF07724 AAA domain (Cdc48 subfamily) FK538_01310 PF10431 C-terminal, D2-small domain, of ClpB protein FK538_01315 PF02151 UvrB/uvrC motif FK538_01315 PF08459 UvrC Helix-hairpin-helix N-terminal FK538_01315 PF01541 GIY-YIG catalytic domain FK538_01325 PF01066 CDP-alcohol phosphatidyltransferase FK538_01330 PF00664 ABC transporter transmembrane region FK538_01330 PF00005 ABC transporter FK538_01345 PF03652 Holliday junction resolvase FK538_01350 PF02622 Uncharacterized ACR, COG1678 FK538_01355 PF02463 RecF/RecN/SMC N terminal domain FK538_01360 PF06865 Pyrimidine/purine nucleoside phosphorylase FK538_01365 PF08032 RNA 2'-O ribose methyltransferase substrate binding FK538_01365 PF00588 SpoU rRNA Methylase family FK538_01375 PF01121 Dephospho-CoA kinase FK538_01380 PF06750 Bacterial Peptidase A24 N-terminal domain FK538_01380 PF01478 Type IV leader peptidase family FK538_01385 PF00482 Type II secretion system (T2SS), protein F FK538_01390 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FK538_01390 PF00437 Type II/IV secretion system protein FK538_01395 PF00121 Triosephosphate isomerase FK538_01400 PF03840 Preprotein translocase SecG subunit FK538_01425 PF17384 RimP C-terminal SH3 domain FK538_01425 PF02576 RimP N-terminal domain FK538_01430 PF00575 S1 RNA binding domain FK538_01430 PF13184 NusA-like KH domain FK538_01430 PF08529 NusA N-terminal domain FK538_01435 PF04760 Translation initiation factor IF-2, N-terminal region FK538_01435 PF08364 Bacterial translation initiation factor IF-2 associated region FK538_01435 PF11987 Translation-initiation factor 2 FK538_01435 PF00009 Elongation factor Tu GTP binding domain FK538_01440 PF02033 Ribosome-binding factor A FK538_01450 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FK538_01460 PF00361 Proton-conducting membrane transporter FK538_01465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FK538_01470 PF00361 Proton-conducting membrane transporter FK538_01470 PF13244 Domain of unknown function (DUF4040) FK538_01470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FK538_01470 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FK538_01485 PF01502 Phosphoribosyl-AMP cyclohydrolase FK538_01495 PF03109 ABC1 family FK538_01505 PF01209 ubiE/COQ5 methyltransferase family FK538_01515 PF03976 Polyphosphate kinase 2 (PPK2) FK538_01525 PF17946 RecC C-terminal domain FK538_01530 PF12705 PD-(D/E)XK nuclease superfamily FK538_01530 PF13361 UvrD-like helicase C-terminal domain FK538_01530 PF00580 UvrD/REP helicase N-terminal domain FK538_01535 PF13538 UvrD-like helicase C-terminal domain FK538_01540 PF12323 Helix-turn-helix domain FK538_01540 PF01385 Probable transposase FK538_01540 PF07282 Putative transposase DNA-binding domain FK538_01545 PF00312 Ribosomal protein S15 FK538_01550 PF00013 KH domain FK538_01550 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FK538_01550 PF01138 3' exoribonuclease family, domain 1 FK538_01550 PF03725 3' exoribonuclease family, domain 2 FK538_01550 PF00575 S1 RNA binding domain FK538_01560 PF04325 Protein of unknown function (DUF465) FK538_01575 PF01430 Hsp33 protein FK538_01580 PF00999 Sodium/hydrogen exchanger family FK538_01580 PF02254 TrkA-N domain FK538_01585 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FK538_01585 PF00270 DEAD/DEAH box helicase FK538_01585 PF00271 Helicase conserved C-terminal domain FK538_01585 PF17764 3′ DNA-binding domain (3′BD) FK538_01585 PF18074 Primosomal protein N C-terminal domain FK538_01590 PF00482 Type II secretion system (T2SS), protein F FK538_01595 PF07963 Prokaryotic N-terminal methylation motif FK538_01595 PF08334 Type II secretion system (T2SS), protein G FK538_01605 PF00795 Carbon-nitrogen hydrolase FK538_01610 PF03471 Transporter associated domain FK538_01610 PF00571 CBS domain FK538_01615 PF01206 Sulfurtransferase TusA FK538_01620 PF04717 Type VI secretion system, phage-baseplate injector FK538_01710 PF01177 Asp/Glu/Hydantoin racemase FK538_01720 PF00762 Ferrochelatase FK538_01725 PF00753 Metallo-beta-lactamase superfamily FK538_01735 PF03884 DNA gyrase inhibitor YacG FK538_01745 PF13247 4Fe-4S dicluster domain FK538_01745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FK538_01745 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_01755 PF01209 ubiE/COQ5 methyltransferase family FK538_01770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FK538_01770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FK538_01800 PF02092 Glycyl-tRNA synthetase beta subunit FK538_01800 PF05746 DALR anticodon binding domain FK538_01805 PF02091 Glycyl-tRNA synthetase alpha subunit FK538_01810 PF00571 CBS domain FK538_01810 PF01743 Poly A polymerase head domain FK538_01815 PF04024 PspC domain FK538_01840 PF00501 AMP-binding enzyme FK538_01840 PF13193 AMP-binding enzyme C-terminal domain FK538_01845 PF10150 Ribonuclease E/G family FK538_01845 PF00575 S1 RNA binding domain FK538_01845 PF12111 Polyribonucleotide phosphorylase C terminal FK538_01855 PF00849 RNA pseudouridylate synthase FK538_01855 PF01479 S4 domain FK538_01860 PF13419 Haloacid dehalogenase-like hydrolase FK538_01865 PF01557 Fumarylacetoacetate (FAA) hydrolase family FK538_01870 PF01118 Semialdehyde dehydrogenase, NAD binding domain FK538_01870 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation FK538_01875 PF07836 DmpG-like communication domain FK538_01875 PF00682 HMGL-like FK538_01880 PF03573 outer membrane porin, OprD family FK538_01885 PF00561 alpha/beta hydrolase fold FK538_01895 PF03466 LysR substrate binding domain FK538_01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_01900 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FK538_01900 PF00355 Rieske [2Fe-2S] domain FK538_01905 PF00866 Ring hydroxylating beta subunit FK538_01910 PF00355 Rieske [2Fe-2S] domain FK538_01915 PF00106 short chain dehydrogenase FK538_01920 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FK538_01925 PF14759 Reductase C-terminal FK538_01925 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_01935 PF12706 Beta-lactamase superfamily domain FK538_01940 PF06628 Catalase-related immune-responsive FK538_01940 PF00199 Catalase FK538_01950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_01950 PF18158 Adaptive response protein AidB N-terminal domain FK538_01950 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_01965 PF02896 PEP-utilising enzyme, TIM barrel domain FK538_01965 PF01590 GAF domain FK538_01965 PF00391 PEP-utilising enzyme, mobile domain FK538_01965 PF05524 PEP-utilising enzyme, N-terminal FK538_01970 PF00293 NUDIX domain FK538_01985 PF03781 Sulfatase-modifying factor enzyme 1 FK538_01985 PF12867 DinB superfamily FK538_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_01990 PF03466 LysR substrate binding domain FK538_02000 PF00330 Aconitase family (aconitate hydratase) FK538_02005 PF00694 Aconitase C-terminal domain FK538_02015 PF00180 Isocitrate/isopropylmalate dehydrogenase FK538_02025 PF01176 Translation initiation factor 1A / IF-1 FK538_02035 PF01416 tRNA pseudouridine synthase FK538_02055 PF02774 Semialdehyde dehydrogenase, dimerisation domain FK538_02055 PF01118 Semialdehyde dehydrogenase, NAD binding domain FK538_02070 PF03279 Bacterial lipid A biosynthesis acyltransferase FK538_02080 PF04102 SlyX FK538_02095 PF01751 Toprim domain FK538_02095 PF01131 DNA topoisomerase FK538_02095 PF01396 Topoisomerase DNA binding C4 zinc finger FK538_02095 PF08272 Topoisomerase I zinc-ribbon-like FK538_02110 PF02595 Glycerate kinase family FK538_02120 PF00580 UvrD/REP helicase N-terminal domain FK538_02120 PF13361 UvrD-like helicase C-terminal domain FK538_02125 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FK538_02140 PF00999 Sodium/hydrogen exchanger family FK538_02140 PF02254 TrkA-N domain FK538_02145 PF00471 Ribosomal protein L33 FK538_02150 PF00830 Ribosomal L28 family FK538_02155 PF00171 Aldehyde dehydrogenase family FK538_02160 PF00440 Bacterial regulatory proteins, tetR family FK538_02160 PF08360 QacR-like protein, C-terminal region FK538_02165 PF01842 ACT domain FK538_02165 PF00551 Formyl transferase FK538_02175 PF01618 MotA/TolQ/ExbB proton channel family FK538_02190 PF00892 EamA-like transporter family FK538_02195 PF03631 Virulence factor BrkB FK538_02200 PF03358 NADPH-dependent FMN reductase FK538_02235 PF02130 Uncharacterized protein family UPF0054 FK538_02240 PF02562 PhoH-like protein FK538_02245 PF00919 Uncharacterized protein family UPF0004 FK538_02245 PF01938 TRAM domain FK538_02245 PF04055 Radical SAM superfamily FK538_02250 PF01464 Transglycosylase SLT domain FK538_02250 PF10145 Phage-related minor tail protein FK538_02250 PF01551 Peptidase family M23 FK538_02260 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FK538_02260 PF00056 lactate/malate dehydrogenase, NAD binding domain FK538_02265 PF13006 Insertion element 4 transposase N-terminal FK538_02265 PF01609 Transposase DDE domain FK538_02295 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FK538_02300 PF01066 CDP-alcohol phosphatidyltransferase FK538_02335 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_02335 PF00403 Heavy-metal-associated domain FK538_02335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FK538_02350 PF00753 Metallo-beta-lactamase superfamily FK538_02350 PF04273 Putative phosphatase (DUF442) FK538_02360 PF00085 Thioredoxin FK538_02365 PF03061 Thioesterase superfamily FK538_02375 PF04461 Protein of unknown function (DUF520) FK538_02385 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FK538_02385 PF01266 FAD dependent oxidoreductase FK538_02395 PF03795 YCII-related domain FK538_02400 PF04279 Intracellular septation protein A FK538_02405 PF02811 PHP domain FK538_02410 PF01062 Bestrophin, RFP-TM, chloride channel FK538_02415 PF04002 RadC-like JAB domain FK538_02420 PF02441 Flavoprotein FK538_02420 PF04127 DNA / pantothenate metabolism flavoprotein FK538_02425 PF02556 Preprotein translocase subunit SecB FK538_02430 PF00462 Glutaredoxin FK538_02440 PF03193 RsgA GTPase FK538_02445 PF00929 Exonuclease FK538_02465 PF05593 RHS Repeat FK538_02465 PF03527 RHS protein FK538_02480 PF13737 Transposase DDE domain FK538_02520 PF13737 Transposase DDE domain FK538_02530 PF02321 Outer membrane efflux protein FK538_02535 PF02687 FtsX-like permease family FK538_02535 PF12704 MacB-like periplasmic core domain FK538_02535 PF00005 ABC transporter FK538_02540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK538_02555 PF09334 tRNA synthetases class I (M) FK538_02555 PF00133 tRNA synthetases class I (I, L, M and V) FK538_02555 PF13603 Leucyl-tRNA synthetase, Domain 2 FK538_02555 PF08264 Anticodon-binding domain of tRNA FK538_02565 PF00205 Thiamine pyrophosphate enzyme, central domain FK538_02565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FK538_02565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FK538_02570 PF10369 Small subunit of acetolactate synthase FK538_02575 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FK538_02575 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FK538_02600 PF13439 Glycosyltransferase Family 4 FK538_02600 PF00534 Glycosyl transferases group 1 FK538_02605 PF01569 PAP2 superfamily FK538_02610 PF04384 Iron-sulphur cluster assembly FK538_02615 PF00334 Nucleoside diphosphate kinase FK538_02620 PF04055 Radical SAM superfamily FK538_02630 PF13464 Domain of unknown function (DUF4115) FK538_02635 PF04551 GcpE protein FK538_02640 PF13393 Histidyl-tRNA synthetase FK538_02640 PF03129 Anticodon binding domain FK538_02650 PF01011 PQQ enzyme repeat FK538_02650 PF13360 PQQ-like domain FK538_02655 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FK538_02655 PF01926 50S ribosome-binding GTPase FK538_02665 PF03819 MazG nucleotide pyrophosphohydrolase domain FK538_02675 PF12627 Probable RNA and SrmB- binding site of polymerase A FK538_02675 PF01743 Poly A polymerase head domain FK538_02675 PF12626 Polymerase A arginine-rich C-terminus FK538_02680 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FK538_02685 PF02548 Ketopantoate hydroxymethyltransferase FK538_02690 PF02569 Pantoate-beta-alanine ligase FK538_02695 PF03668 P-loop ATPase protein family FK538_02700 PF00381 PTS HPr component phosphorylation site FK538_02705 PF04751 Protein of unknown function (DUF615) FK538_02710 PF00501 AMP-binding enzyme FK538_02710 PF13193 AMP-binding enzyme C-terminal domain FK538_02715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FK538_02715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FK538_02715 PF02824 TGS domain FK538_02715 PF03129 Anticodon binding domain FK538_02720 PF05198 Translation initiation factor IF-3, N-terminal domain FK538_02720 PF00707 Translation initiation factor IF-3, C-terminal domain FK538_02725 PF02798 Glutathione S-transferase, N-terminal domain FK538_02725 PF00043 Glutathione S-transferase, C-terminal domain FK538_02730 PF09335 SNARE associated Golgi protein FK538_02740 PF01632 Ribosomal protein L35 FK538_02745 PF00453 Ribosomal protein L20 FK538_02760 PF01409 tRNA synthetases class II core domain (F) FK538_02760 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FK538_02765 PF03484 tRNA synthetase B5 domain FK538_02765 PF03147 Ferredoxin-fold anticodon binding domain FK538_02765 PF03483 B3/4 domain FK538_02765 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FK538_02765 PF01588 Putative tRNA binding domain FK538_02770 PF00216 Bacterial DNA-binding protein FK538_02780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FK538_02780 PF07498 Rho termination factor, N-terminal domain FK538_02780 PF07497 Rho termination factor, RNA-binding domain FK538_02785 PF00085 Thioredoxin FK538_02790 PF02541 Ppx/GppA phosphatase family FK538_02795 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FK538_02800 PF01171 PP-loop family FK538_02800 PF09179 TilS substrate binding domain FK538_02800 PF11734 TilS substrate C-terminal domain FK538_02805 PF03807 NADP oxidoreductase coenzyme F420-dependent FK538_02805 PF14748 Pyrroline-5-carboxylate reductase dimerisation FK538_02810 PF02325 YGGT family FK538_02815 PF00476 DNA polymerase family A FK538_02815 PF01612 3'-5' exonuclease FK538_02815 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FK538_02815 PF01367 5'-3' exonuclease, C-terminal SAM fold FK538_02835 PF00437 Type II/IV secretion system protein FK538_02845 PF00795 Carbon-nitrogen hydrolase FK538_02900 PF04386 Stringent starvation protein B FK538_02905 PF00043 Glutathione S-transferase, C-terminal domain FK538_02905 PF02798 Glutathione S-transferase, N-terminal domain FK538_02910 PF00380 Ribosomal protein S9/S16 FK538_02915 PF00572 Ribosomal protein L13 FK538_02920 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FK538_02925 PF00398 Ribosomal RNA adenine dimethylase FK538_02930 PF00149 Calcineurin-like phosphoesterase FK538_02960 PF01926 50S ribosome-binding GTPase FK538_02960 PF13167 GTP-binding GTPase N-terminal FK538_02960 PF16360 GTP-binding GTPase Middle Region FK538_02970 PF13091 PLD-like domain FK538_02975 PF00149 Calcineurin-like phosphoesterase FK538_02985 PF00083 Sugar (and other) transporter FK538_02985 PF07690 Major Facilitator Superfamily FK538_02990 PF03006 Haemolysin-III related FK538_03000 PF13673 Acetyltransferase (GNAT) domain FK538_03015 PF00378 Enoyl-CoA hydratase/isomerase FK538_03015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FK538_03015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FK538_03020 PF02803 Thiolase, C-terminal domain FK538_03020 PF00108 Thiolase, N-terminal domain FK538_03025 PF02311 AraC-like ligand binding domain FK538_03025 PF12833 Helix-turn-helix domain FK538_03030 PF02515 CoA-transferase family III FK538_03035 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FK538_03035 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FK538_03045 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain FK538_03045 PF01113 Dihydrodipicolinate reductase, N-terminus FK538_03050 PF02803 Thiolase, C-terminal domain FK538_03050 PF00108 Thiolase, N-terminal domain FK538_03055 PF07963 Prokaryotic N-terminal methylation motif FK538_03055 PF00114 Pilin (bacterial filament) FK538_03060 PF13505 Outer membrane protein beta-barrel domain FK538_03060 PF00691 OmpA family FK538_03070 PF00324 Amino acid permease FK538_03075 PF05175 Methyltransferase small domain FK538_03075 PF08468 Methyltransferase small domain N-terminal FK538_03080 PF00860 Permease family FK538_03090 PF01741 Large-conductance mechanosensitive channel, MscL FK538_03095 PF00639 PPIC-type PPIASE domain FK538_03095 PF09312 SurA N-terminal domain FK538_03100 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FK538_03100 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FK538_03100 PF06827 Zinc finger found in FPG and IleRS FK538_03105 PF02358 Trehalose-phosphatase FK538_03110 PF00982 Glycosyltransferase family 20 FK538_03120 PF02585 GlcNAc-PI de-N-acetylase FK538_03120 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FK538_03135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK538_03150 PF01571 Aminomethyltransferase folate-binding domain FK538_03155 PF00330 Aconitase family (aconitate hydratase) FK538_03155 PF00694 Aconitase C-terminal domain FK538_03185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FK538_03190 PF00849 RNA pseudouridylate synthase FK538_03205 PF04343 Protein of unknown function, DUF488 FK538_03210 PF03831 PhnA domain FK538_03210 PF08274 PhnA Zinc-Ribbon FK538_03230 PF01207 Dihydrouridine synthase (Dus) FK538_03235 PF00313 'Cold-shock' DNA-binding domain FK538_03270 PF00448 SRP54-type protein, GTPase domain FK538_03270 PF02978 Signal peptide binding domain FK538_03270 PF02881 SRP54-type protein, helical bundle domain FK538_03280 PF03309 Type III pantothenate kinase FK538_03290 PF01925 Sulfite exporter TauE/SafE FK538_03300 PF06470 SMC proteins Flexible Hinge Domain FK538_03300 PF02463 RecF/RecN/SMC N terminal domain FK538_03305 PF04354 ZipA, C-terminal FtsZ-binding domain FK538_03310 PF12826 Helix-hairpin-helix motif FK538_03310 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FK538_03310 PF00533 BRCA1 C Terminus (BRCT) domain FK538_03310 PF01653 NAD-dependent DNA ligase adenylation domain FK538_03310 PF03120 NAD-dependent DNA ligase OB-fold domain FK538_03315 PF00210 Ferritin-like domain FK538_03320 PF12697 Alpha/beta hydrolase family FK538_03320 PF08241 Methyltransferase domain FK538_03325 PF00202 Aminotransferase class-III FK538_03325 PF06968 Biotin and Thiamin Synthesis associated domain FK538_03325 PF04055 Radical SAM superfamily FK538_03330 PF00155 Aminotransferase class I and II FK538_03345 PF01479 S4 domain FK538_03345 PF00849 RNA pseudouridylate synthase FK538_03350 PF04079 Segregation and condensation complex subunit ScpB FK538_03355 PF02616 Segregation and condensation protein ScpA FK538_03365 PF01300 Telomere recombination FK538_03370 PF04315 Elongation factor P hydroxylase FK538_03375 PF02620 Large ribosomal RNA subunit accumulation protein YceD FK538_03380 PF01783 Ribosomal L32p protein family FK538_03385 PF00698 Acyl transferase domain FK538_03395 PF00550 Phosphopantetheine attachment site FK538_03400 PF04972 BON domain FK538_03400 PF01476 LysM domain FK538_03405 PF00268 Ribonucleotide reductase, small chain FK538_03415 PF02867 Ribonucleotide reductase, barrel domain FK538_03415 PF00317 Ribonucleotide reductase, all-alpha domain FK538_03415 PF03477 ATP cone domain FK538_03420 PF00072 Response regulator receiver domain FK538_03420 PF00486 Transcriptional regulatory protein, C terminal FK538_03425 PF00672 HAMP domain FK538_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_03425 PF00512 His Kinase A (phospho-acceptor) domain FK538_03430 PF00474 Sodium:solute symporter family FK538_03435 PF01145 SPFH domain / Band 7 family FK538_03445 PF01734 Patatin-like phospholipase FK538_03460 PF00194 Eukaryotic-type carbonic anhydrase FK538_03465 PF00005 ABC transporter FK538_03470 PF00528 Binding-protein-dependent transport system inner membrane component FK538_03475 PF00528 Binding-protein-dependent transport system inner membrane component FK538_03480 PF00497 Bacterial extracellular solute-binding proteins, family 3 FK538_03490 PF04239 Protein of unknown function (DUF421) FK538_03505 PF04480 Protein of unknown function (DUF559) FK538_03530 PF08264 Anticodon-binding domain of tRNA FK538_03530 PF10458 Valyl tRNA synthetase tRNA binding arm FK538_03530 PF00133 tRNA synthetases class I (I, L, M and V) FK538_03545 PF01906 Putative heavy-metal-binding FK538_03550 PF01906 Putative heavy-metal-binding FK538_03555 PF02321 Outer membrane efflux protein FK538_03560 PF00873 AcrB/AcrD/AcrF family FK538_03565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK538_03565 PF00529 HlyD membrane-fusion protein of T1SS FK538_03570 PF01569 PAP2 superfamily FK538_03580 PF00348 Polyprenyl synthetase FK538_03585 PF00829 Ribosomal prokaryotic L21 protein FK538_03590 PF01016 Ribosomal L27 protein FK538_03595 PF03548 Outer membrane lipoprotein carrier protein LolA FK538_03605 PF02403 Seryl-tRNA synthetase N-terminal domain FK538_03605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FK538_03610 PF10414 Sirohaem synthase dimerisation region FK538_03610 PF14824 Sirohaem biosynthesis protein central FK538_03610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FK538_03615 PF00588 SpoU rRNA Methylase family FK538_03620 PF13520 Amino acid permease FK538_03630 PF00465 Iron-containing alcohol dehydrogenase FK538_03640 PF03099 Biotin/lipoate A/B protein ligase family FK538_03650 PF04546 Sigma-70, non-essential region FK538_03650 PF03979 Sigma-70 factor, region 1.1 FK538_03650 PF00140 Sigma-70 factor, region 1.2 FK538_03650 PF04545 Sigma-70, region 4 FK538_03650 PF04539 Sigma-70 region 3 FK538_03650 PF04542 Sigma-70 region 2 FK538_03680 PF09335 SNARE associated Golgi protein FK538_03705 PF02261 Aspartate decarboxylase FK538_03710 PF01195 Peptidyl-tRNA hydrolase FK538_03715 PF01386 Ribosomal L25p family FK538_03720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FK538_03720 PF14572 Phosphoribosyl synthetase-associated domain FK538_03745 PF00288 GHMP kinases N terminal domain FK538_03745 PF08544 GHMP kinases C terminal FK538_03750 PF03550 Outer membrane lipoprotein LolB FK538_03760 PF01488 Shikimate / quinate 5-dehydrogenase FK538_03760 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FK538_03760 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FK538_03765 PF01807 CHC2 zinc finger FK538_03765 PF10410 DnaB-helicase binding domain of primase FK538_03765 PF08275 DNA primase catalytic core, N-terminal domain FK538_03765 PF08278 DNA primase DnaG DnaB-binding FK538_03770 PF13525 Outer membrane lipoprotein FK538_03775 PF00849 RNA pseudouridylate synthase FK538_03775 PF01479 S4 domain FK538_03790 PF01668 SmpB protein FK538_03795 PF01467 Cytidylyltransferase-like FK538_03800 PF00037 4Fe-4S binding domain FK538_03830 PF00795 Carbon-nitrogen hydrolase FK538_03830 PF02540 NAD synthase FK538_03840 PF17868 AAA lid domain FK538_03840 PF07728 AAA domain (dynein-related subfamily) FK538_03840 PF12592 Protein of unknown function (DUF3763) FK538_03845 PF05762 VWA domain containing CoxE-like protein FK538_03865 PF00285 Citrate synthase, C-terminal domain FK538_03870 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FK538_03875 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FK538_03880 PF02910 Fumarate reductase flavoprotein C-term FK538_03880 PF00890 FAD binding domain FK538_03885 PF13085 2Fe-2S iron-sulfur cluster binding domain FK538_03890 PF00676 Dehydrogenase E1 component FK538_03890 PF02779 Transketolase, pyrimidine binding domain FK538_03890 PF16078 2-oxoglutarate dehydrogenase N-terminus FK538_03890 PF16870 2-oxoglutarate dehydrogenase C-terminal FK538_03895 PF02817 e3 binding domain FK538_03895 PF00364 Biotin-requiring enzyme FK538_03895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FK538_03900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FK538_03900 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_03905 PF08442 ATP-grasp domain FK538_03905 PF00549 CoA-ligase FK538_03910 PF02629 CoA binding domain FK538_03910 PF00549 CoA-ligase FK538_03920 PF01522 Polysaccharide deacetylase FK538_03920 PF14883 Hypothetical glycosyl hydrolase family 13 FK538_03925 PF00535 Glycosyl transferase family 2 FK538_03935 PF15975 Flotillin FK538_03935 PF01145 SPFH domain / Band 7 family FK538_03945 PF00579 tRNA synthetases class I (W and Y) FK538_03950 PF05661 Protein of unknown function (DUF808) FK538_03955 PF04228 Putative neutral zinc metallopeptidase FK538_03960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FK538_03965 PF00582 Universal stress protein family FK538_03970 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_03975 PF01042 Endoribonuclease L-PSP FK538_03980 PF00440 Bacterial regulatory proteins, tetR family FK538_03985 PF01272 Transcription elongation factor, GreA/GreB, C-term FK538_03985 PF03449 Transcription elongation factor, N-terminal FK538_03990 PF02142 MGS-like domain FK538_03990 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FK538_03990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FK538_03995 PF00117 Glutamine amidotransferase class-I FK538_03995 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FK538_04010 PF01985 CRS1 / YhbY (CRM) domain FK538_04015 PF01728 FtsJ-like methyltransferase FK538_04020 PF00004 ATPase family associated with various cellular activities (AAA) FK538_04020 PF17862 AAA+ lid domain FK538_04020 PF06480 FtsH Extracellular FK538_04020 PF01434 Peptidase family M41 FK538_04030 PF00809 Pterin binding enzyme FK538_04045 PF09423 PhoD-like phosphatase FK538_04045 PF16655 PhoD-like phosphatase, N-terminal domain FK538_04065 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FK538_04065 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FK538_04080 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FK538_04080 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FK538_04085 PF00781 Diacylglycerol kinase catalytic domain FK538_04095 PF00166 Chaperonin 10 Kd subunit FK538_04100 PF00118 TCP-1/cpn60 chaperonin family FK538_04115 PF00873 AcrB/AcrD/AcrF family FK538_04120 PF00571 CBS domain FK538_04120 PF01769 Divalent cation transporter FK538_04120 PF03448 MgtE intracellular N domain FK538_04130 PF01435 Peptidase family M48 FK538_04135 PF01551 Peptidase family M23 FK538_04135 PF01464 Transglycosylase SLT domain FK538_04135 PF10145 Phage-related minor tail protein FK538_04140 PF01171 PP-loop family FK538_04150 PF00497 Bacterial extracellular solute-binding proteins, family 3 FK538_04150 PF01464 Transglycosylase SLT domain FK538_04155 PF01272 Transcription elongation factor, GreA/GreB, C-term FK538_04155 PF03449 Transcription elongation factor, N-terminal FK538_04175 PF00005 ABC transporter FK538_04180 PF02678 Pirin FK538_04180 PF17954 Quercetinase C-terminal cupin domain FK538_04190 PF01208 Uroporphyrinogen decarboxylase (URO-D) FK538_04195 PF05675 Protein of unknown function (DUF817) FK538_04210 PF00990 Diguanylate cyclase, GGDEF domain FK538_04230 PF00218 Indole-3-glycerol phosphate synthase FK538_04235 PF02885 Glycosyl transferase family, helical bundle domain FK538_04235 PF00591 Glycosyl transferase family, a/b domain FK538_04240 PF00117 Glutamine amidotransferase class-I FK538_04245 PF03951 Glutamine synthetase, beta-Grasp domain FK538_04245 PF00120 Glutamine synthetase, catalytic domain FK538_04250 PF04345 Chorismate lyase FK538_04255 PF01040 UbiA prenyltransferase family FK538_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_04265 PF03466 LysR substrate binding domain FK538_04270 PF01494 FAD binding domain FK538_04300 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FK538_04300 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FK538_04305 PF01784 NIF3 (NGG1p interacting factor 3) FK538_04310 PF13180 PDZ domain FK538_04310 PF17820 PDZ domain FK538_04325 PF18073 Rubredoxin metal binding domain FK538_04330 PF01235 Sodium:alanine symporter family FK538_04335 PF00324 Amino acid permease FK538_04345 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FK538_04345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FK538_04350 PF01678 Diaminopimelate epimerase FK538_04355 PF00561 alpha/beta hydrolase fold FK538_04360 PF02899 Phage integrase, N-terminal SAM-like domain FK538_04360 PF00589 Phage integrase family FK538_04370 PF01037 Lrp/AsnC ligand binding domain FK538_04375 PF01810 LysE type translocator FK538_04380 PF01012 Electron transfer flavoprotein domain FK538_04385 PF00766 Electron transfer flavoprotein FAD-binding domain FK538_04385 PF01012 Electron transfer flavoprotein domain FK538_04395 PF00521 DNA gyrase/topoisomerase IV, subunit A FK538_04395 PF03989 DNA gyrase C-terminal domain, beta-propeller FK538_04405 PF00266 Aminotransferase class-V FK538_04415 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FK538_04430 PF12704 MacB-like periplasmic core domain FK538_04430 PF02687 FtsX-like permease family FK538_04435 PF00005 ABC transporter FK538_04440 PF13567 Domain of unknown function (DUF4131) FK538_04440 PF00753 Metallo-beta-lactamase superfamily FK538_04440 PF03772 Competence protein FK538_04450 PF06965 Na+/H+ antiporter 1 FK538_04450 PF01343 Peptidase family S49 FK538_04460 PF00551 Formyl transferase FK538_04465 PF00586 AIR synthase related protein, N-terminal domain FK538_04465 PF02769 AIR synthase related protein, C-terminal domain FK538_04470 PF01594 AI-2E family transporter FK538_04475 PF08299 Bacterial dnaA protein helix-turn-helix FK538_04475 PF11638 DnaA N-terminal domain FK538_04475 PF00308 Bacterial dnaA protein FK538_04505 PF08032 RNA 2'-O ribose methyltransferase substrate binding FK538_04505 PF00588 SpoU rRNA Methylase family FK538_04510 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FK538_04520 PF01609 Transposase DDE domain FK538_04520 PF13006 Insertion element 4 transposase N-terminal FK538_04525 PF00691 OmpA family FK538_04530 PF04052 TolB amino-terminal domain FK538_04530 PF07676 WD40-like Beta Propeller Repeat FK538_04540 PF02472 Biopolymer transport protein ExbD/TolR FK538_04545 PF01618 MotA/TolQ/ExbB proton channel family FK538_04550 PF03061 Thioesterase superfamily FK538_04555 PF01546 Peptidase family M20/M25/M40 FK538_04555 PF07687 Peptidase dimerisation domain FK538_04560 PF03069 Acetamidase/Formamidase family FK538_04570 PF05491 RuvB C-terminal winged helix domain FK538_04570 PF05496 Holliday junction DNA helicase RuvB P-loop domain FK538_04570 PF17864 RuvB AAA lid domain FK538_04575 PF01330 RuvA N terminal domain FK538_04575 PF07499 RuvA, C-terminal domain FK538_04580 PF01966 HD domain FK538_04590 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FK538_04590 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FK538_04590 PF02769 AIR synthase related protein, C-terminal domain FK538_04605 PF00881 Nitroreductase family FK538_04610 PF00378 Enoyl-CoA hydratase/isomerase FK538_04615 PF00293 NUDIX domain FK538_04615 PF01467 Cytidylyltransferase-like FK538_04620 PF04264 YceI-like domain FK538_04625 PF00578 AhpC/TSA family FK538_04635 PF06508 Queuosine biosynthesis protein QueC FK538_04640 PF04055 Radical SAM superfamily FK538_04645 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_04645 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FK538_04645 PF14602 Hexapeptide repeat of succinyl-transferase FK538_04660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_04660 PF03466 LysR substrate binding domain FK538_04665 PF12857 TOBE-like domain FK538_04665 PF00005 ABC transporter FK538_04670 PF00528 Binding-protein-dependent transport system inner membrane component FK538_04675 PF00528 Binding-protein-dependent transport system inner membrane component FK538_04695 PF02618 YceG-like family FK538_04700 PF02223 Thymidylate kinase FK538_04710 PF13419 Haloacid dehalogenase-like hydrolase FK538_04715 PF02910 Fumarate reductase flavoprotein C-term FK538_04715 PF00890 FAD binding domain FK538_04720 PF13180 PDZ domain FK538_04730 PF00679 Elongation factor G C-terminus FK538_04730 PF03144 Elongation factor Tu domain 2 FK538_04730 PF00009 Elongation factor Tu GTP binding domain FK538_04730 PF06421 GTP-binding protein LepA C-terminus FK538_04735 PF10502 Signal peptidase, peptidase S26 FK538_04745 PF00035 Double-stranded RNA binding motif FK538_04745 PF14622 Ribonuclease-III-like FK538_04750 PF07650 KH domain FK538_04750 PF01926 50S ribosome-binding GTPase FK538_04760 PF11967 Recombination protein O N terminal FK538_04760 PF02565 Recombination protein O C terminal FK538_04765 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FK538_04770 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FK538_04790 PF00155 Aminotransferase class I and II FK538_04810 PF12344 Ultra-violet resistance protein B FK538_04810 PF00271 Helicase conserved C-terminal domain FK538_04810 PF04851 Type III restriction enzyme, res subunit FK538_04810 PF17757 UvrB interaction domain FK538_04810 PF02151 UvrB/uvrC motif FK538_04820 PF00892 EamA-like transporter family FK538_04825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FK538_04825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FK538_04840 PF05368 NmrA-like family FK538_04845 PF01638 HxlR-like helix-turn-helix FK538_04850 PF07690 Major Facilitator Superfamily FK538_04855 PF01018 GTP1/OBG FK538_04855 PF01926 50S ribosome-binding GTPase FK538_04860 PF00696 Amino acid kinase family FK538_04860 PF01472 PUA domain FK538_04870 PF00202 Aminotransferase class-III FK538_04875 PF00282 Pyridoxal-dependent decarboxylase conserved domain FK538_04885 PF00528 Binding-protein-dependent transport system inner membrane component FK538_04890 PF00528 Binding-protein-dependent transport system inner membrane component FK538_04895 PF00005 ABC transporter FK538_04900 PF08496 Peptidase family S49 N-terminal FK538_04900 PF01343 Peptidase family S49 FK538_04910 PF08328 Adenylosuccinate lyase C-terminal FK538_04910 PF00206 Lyase FK538_04915 PF04356 Protein of unknown function (DUF489) FK538_04925 PF00293 NUDIX domain FK538_04940 PF02595 Glycerate kinase family FK538_04945 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_04950 PF07943 Penicillin-binding protein 5, C-terminal domain FK538_04950 PF00768 D-alanyl-D-alanine carboxypeptidase FK538_04965 PF01975 Survival protein SurE FK538_04970 PF01551 Peptidase family M23 FK538_04970 PF01476 LysM domain FK538_04975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_04975 PF03466 LysR substrate binding domain FK538_04980 PF00202 Aminotransferase class-III FK538_04985 PF00462 Glutaredoxin FK538_04990 PF13654 AAA domain FK538_04990 PF05362 Lon protease (S16) C-terminal proteolytic domain FK538_04995 PF07690 Major Facilitator Superfamily FK538_05000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FK538_05005 PF13593 SBF-like CPA transporter family (DUF4137) FK538_05010 PF01197 Ribosomal protein L31 FK538_05025 PF04055 Radical SAM superfamily FK538_05030 PF09285 Elongation factor P, C-terminal FK538_05030 PF08207 Elongation factor P (EF-P) KOW-like domain FK538_05030 PF01132 Elongation factor P (EF-P) OB domain FK538_05035 PF13722 5TM C-terminal transporter carbon starvation CstA FK538_05035 PF02554 Carbon starvation protein CstA FK538_05040 PF04328 Selenoprotein, putative FK538_05045 PF17863 AAA lid domain FK538_05045 PF07726 ATPase family associated with various cellular activities (AAA) FK538_05055 PF13559 Domain of unknown function (DUF4129) FK538_05055 PF01841 Transglutaminase-like superfamily FK538_05055 PF11992 Domain of unknown function (DUF3488) FK538_05075 PF00860 Permease family FK538_05080 PF00962 Adenosine/AMP deaminase FK538_05100 PF01351 Ribonuclease HII FK538_05105 PF02599 Global regulator protein family FK538_05110 PF13840 ACT domain FK538_05110 PF01842 ACT domain FK538_05110 PF00696 Amino acid kinase family FK538_05115 PF01411 tRNA synthetases class II (A) FK538_05115 PF02272 DHHA1 domain FK538_05115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FK538_05120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FK538_05120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FK538_05130 PF13393 Histidyl-tRNA synthetase FK538_05135 PF00709 Adenylosuccinate synthetase FK538_05140 PF01435 Peptidase family M48 FK538_05155 PF00248 Aldo/keto reductase family FK538_05160 PF13545 Crp-like helix-turn-helix domain FK538_05160 PF00027 Cyclic nucleotide-binding domain FK538_05165 PF02566 OsmC-like protein FK538_05170 PF10431 C-terminal, D2-small domain, of ClpB protein FK538_05170 PF00004 ATPase family associated with various cellular activities (AAA) FK538_05170 PF17871 AAA lid domain FK538_05170 PF02861 Clp amino terminal domain, pathogenicity island component FK538_05170 PF07724 AAA domain (Cdc48 subfamily) FK538_05175 PF01170 Putative RNA methylase family UPF0020 FK538_05175 PF02926 THUMP domain FK538_05175 PF10672 S-adenosylmethionine-dependent methyltransferase FK538_05185 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FK538_05185 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FK538_05190 PF01979 Amidohydrolase family FK538_05195 PF00691 OmpA family FK538_05195 PF05736 OprF membrane domain FK538_05200 PF01144 Coenzyme A transferase FK538_05205 PF01144 Coenzyme A transferase FK538_05210 PF00682 HMGL-like FK538_05215 PF02785 Biotin carboxylase C-terminal domain FK538_05215 PF00289 Biotin carboxylase, N-terminal domain FK538_05215 PF18140 Propionyl-coenzyme A carboxylase BT domain FK538_05215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FK538_05215 PF00364 Biotin-requiring enzyme FK538_05220 PF00378 Enoyl-CoA hydratase/isomerase FK538_05225 PF01039 Carboxyl transferase domain FK538_05230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_05230 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_05230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_05235 PF00440 Bacterial regulatory proteins, tetR family FK538_05235 PF17925 Tetracyclin repressor-like, C-terminal domain FK538_05240 PF00501 AMP-binding enzyme FK538_05240 PF13193 AMP-binding enzyme C-terminal domain FK538_05260 PF02390 Putative methyltransferase FK538_05270 PF01740 STAS domain FK538_05270 PF00916 Sulfate permease family FK538_05275 PF02798 Glutathione S-transferase, N-terminal domain FK538_05275 PF00043 Glutathione S-transferase, C-terminal domain FK538_05280 PF13006 Insertion element 4 transposase N-terminal FK538_05280 PF01609 Transposase DDE domain FK538_05285 PF05690 Thiazole biosynthesis protein ThiG FK538_05295 PF04241 Protein of unknown function (DUF423) FK538_05300 PF00140 Sigma-70 factor, region 1.2 FK538_05300 PF04545 Sigma-70, region 4 FK538_05300 PF04542 Sigma-70 region 2 FK538_05310 PF00313 'Cold-shock' DNA-binding domain FK538_05315 PF00270 DEAD/DEAH box helicase FK538_05315 PF00271 Helicase conserved C-terminal domain FK538_05330 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FK538_05330 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FK538_05350 PF01180 Dihydroorotate dehydrogenase FK538_05360 PF00156 Phosphoribosyl transferase domain FK538_05375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FK538_05375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FK538_05380 PF01435 Peptidase family M48 FK538_05395 PF09424 Yqey-like protein FK538_05400 PF01165 Ribosomal protein S21 FK538_05405 PF00814 Glycoprotease family FK538_05425 PF03793 PASTA domain FK538_05425 PF00069 Protein kinase domain FK538_05460 PF00753 Metallo-beta-lactamase superfamily FK538_05460 PF16123 Hydroxyacylglutathione hydrolase C-terminus FK538_05465 PF01757 Acyltransferase family FK538_05470 PF00155 Aminotransferase class I and II FK538_05475 PF01641 SelR domain FK538_05480 PF00255 Glutathione peroxidase FK538_05485 PF00155 Aminotransferase class I and II FK538_05490 PF08335 GlnD PII-uridylyltransferase FK538_05490 PF01966 HD domain FK538_05490 PF01909 Nucleotidyltransferase domain FK538_05495 PF02222 ATP-grasp domain FK538_05500 PF05437 Branched-chain amino acid transport protein (AzlD) FK538_05505 PF03591 AzlC protein FK538_05515 PF01926 50S ribosome-binding GTPase FK538_05515 PF06071 Protein of unknown function (DUF933) FK538_05535 PF01797 Transposase IS200 like FK538_05550 PF01709 Transcriptional regulator FK538_05555 PF01553 Acyltransferase FK538_05565 PF14659 Phage integrase, N-terminal SAM-like domain FK538_05565 PF00589 Phage integrase family FK538_05565 PF13356 Arm DNA-binding domain FK538_05580 PF02384 N-6 DNA Methylase FK538_05580 PF12161 HsdM N-terminal domain FK538_05595 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FK538_05595 PF12008 Type I restriction and modification enzyme - subunit R C terminal FK538_05595 PF18766 SWI2/SNF2 ATPase FK538_05625 PF04055 Radical SAM superfamily FK538_05630 PF00676 Dehydrogenase E1 component FK538_05635 PF02779 Transketolase, pyrimidine binding domain FK538_05635 PF02780 Transketolase, C-terminal domain FK538_05640 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FK538_05640 PF00364 Biotin-requiring enzyme FK538_05640 PF02817 e3 binding domain FK538_05645 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_05645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FK538_05660 PF13359 DDE superfamily endonuclease FK538_05660 PF13613 Helix-turn-helix of DDE superfamily endonuclease FK538_05680 PF00550 Phosphopantetheine attachment site FK538_05685 PF00550 Phosphopantetheine attachment site FK538_05695 PF07977 FabA-like domain FK538_05700 PF00795 Carbon-nitrogen hydrolase FK538_05700 PF00535 Glycosyl transferase family 2 FK538_05710 PF00221 Aromatic amino acid lyase FK538_05730 PF04820 Tryptophan halogenase FK538_05740 PF00109 Beta-ketoacyl synthase, N-terminal domain FK538_05740 PF02801 Beta-ketoacyl synthase, C-terminal domain FK538_05755 PF02801 Beta-ketoacyl synthase, C-terminal domain FK538_05755 PF00109 Beta-ketoacyl synthase, N-terminal domain FK538_05790 PF06039 Malate:quinone oxidoreductase (Mqo) FK538_05825 PF00593 TonB dependent receptor FK538_05825 PF07715 TonB-dependent Receptor Plug Domain FK538_05835 PF02472 Biopolymer transport protein ExbD/TolR FK538_05840 PF01618 MotA/TolQ/ExbB proton channel family FK538_05845 PF02333 Phytase FK538_05855 PF08448 PAS fold FK538_05855 PF00990 Diguanylate cyclase, GGDEF domain FK538_05855 PF00563 EAL domain FK538_05870 PF00210 Ferritin-like domain FK538_05875 PF07690 Major Facilitator Superfamily FK538_05880 PF00171 Aldehyde dehydrogenase family FK538_05880 PF01575 MaoC like domain FK538_05885 PF05138 Phenylacetic acid catabolic protein FK538_05890 PF06243 Phenylacetic acid degradation B FK538_05895 PF05138 Phenylacetic acid catabolic protein FK538_05900 PF01883 Iron-sulfur cluster assembly protein FK538_05905 PF00970 Oxidoreductase FAD-binding domain FK538_05905 PF00111 2Fe-2S iron-sulfur cluster binding domain FK538_05905 PF00175 Oxidoreductase NAD-binding domain FK538_05910 PF00378 Enoyl-CoA hydratase/isomerase FK538_05915 PF00378 Enoyl-CoA hydratase/isomerase FK538_05920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FK538_05920 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FK538_05920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FK538_05925 PF00108 Thiolase, N-terminal domain FK538_05925 PF02803 Thiolase, C-terminal domain FK538_05930 PF14535 AMP-binding enzyme C-terminal domain FK538_05930 PF00501 AMP-binding enzyme FK538_05935 PF08223 PaaX-like protein C-terminal domain FK538_05935 PF07848 PaaX-like protein FK538_05940 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_05945 PF13193 AMP-binding enzyme C-terminal domain FK538_05945 PF00501 AMP-binding enzyme FK538_05955 PF04055 Radical SAM superfamily FK538_05955 PF06968 Biotin and Thiamin Synthesis associated domain FK538_05965 PF08331 Domain of unknown function (DUF1730) FK538_05970 PF03853 YjeF-related protein N-terminus FK538_05970 PF01256 Carbohydrate kinase FK538_05975 PF00708 Acylphosphatase FK538_05980 PF02075 Crossover junction endodeoxyribonuclease RuvC FK538_05995 PF01810 LysE type translocator FK538_06010 PF08803 Putative mono-oxygenase ydhR FK538_06015 PF02773 S-adenosylmethionine synthetase, C-terminal domain FK538_06015 PF02772 S-adenosylmethionine synthetase, central domain FK538_06015 PF00438 S-adenosylmethionine synthetase, N-terminal domain FK538_06020 PF02780 Transketolase, C-terminal domain FK538_06020 PF02779 Transketolase, pyrimidine binding domain FK538_06020 PF00456 Transketolase, thiamine diphosphate binding domain FK538_06030 PF04264 YceI-like domain FK538_06035 PF00117 Glutamine amidotransferase class-I FK538_06035 PF00958 GMP synthase C terminal domain FK538_06035 PF02540 NAD synthase FK538_06040 PF00171 Aldehyde dehydrogenase family FK538_06055 PF00465 Iron-containing alcohol dehydrogenase FK538_06065 PF05970 PIF1-like helicase FK538_06065 PF14493 Helix-turn-helix domain FK538_06070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_06070 PF03466 LysR substrate binding domain FK538_06080 PF04284 Protein of unknown function (DUF441) FK538_06085 PF01479 S4 domain FK538_06085 PF00849 RNA pseudouridylate synthase FK538_06100 PF00849 RNA pseudouridylate synthase FK538_06100 PF01479 S4 domain FK538_06105 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FK538_06110 PF08676 MutL C terminal dimerisation domain FK538_06110 PF01119 DNA mismatch repair protein, C-terminal domain FK538_06120 PF17209 Hfq protein FK538_06125 PF09312 SurA N-terminal domain FK538_06125 PF00639 PPIC-type PPIASE domain FK538_06130 PF03968 OstA-like protein FK538_06130 PF04453 LPS transport system D FK538_06135 PF01636 Phosphotransferase enzyme family FK538_06140 PF00483 Nucleotidyl transferase FK538_06145 PF02527 rRNA small subunit methyltransferase G FK538_06150 PF13614 AAA domain FK538_06155 PF17762 HTH domain found in ParB protein FK538_06155 PF02195 ParB-like nuclease domain FK538_06160 PF01618 MotA/TolQ/ExbB proton channel family FK538_06170 PF00005 ABC transporter FK538_06170 PF00664 ABC transporter transmembrane region FK538_06175 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FK538_06180 PF02348 Cytidylyltransferase FK538_06185 PF09115 DNA polymerase III, delta subunit, C terminal FK538_06195 PF01026 TatD related DNase FK538_06205 PF07963 Prokaryotic N-terminal methylation motif FK538_06210 PF02501 Type II secretion system (T2SS), protein I FK538_06210 PF07963 Prokaryotic N-terminal methylation motif FK538_06215 PF07963 Prokaryotic N-terminal methylation motif FK538_06215 PF11612 Type II secretion system (T2SS), protein J FK538_06220 PF03934 Type II secretion system (T2SS), protein K FK538_06230 PF03167 Uracil DNA glycosylase superfamily FK538_06240 PF14437 MafB19-like deaminase FK538_06250 PF02224 Cytidylate kinase FK538_06255 PF00575 S1 RNA binding domain FK538_06260 PF00216 Bacterial DNA-binding protein FK538_06270 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FK538_06275 PF03956 Lysine exporter LysO FK538_06280 PF00743 Flavin-binding monooxygenase-like FK538_06290 PF03969 AFG1-like ATPase FK538_06295 PF01274 Malate synthase FK538_06300 PF00171 Aldehyde dehydrogenase family FK538_06315 PF03471 Transporter associated domain FK538_06315 PF03741 Integral membrane protein TerC family FK538_06335 PF05525 Branched-chain amino acid transport protein FK538_06340 PF00557 Metallopeptidase family M24 FK538_06345 PF03466 LysR substrate binding domain FK538_06345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_06355 PF00072 Response regulator receiver domain FK538_06355 PF00158 Sigma-54 interaction domain FK538_06355 PF02954 Bacterial regulatory protein, Fis family FK538_06360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_06360 PF00512 His Kinase A (phospho-acceptor) domain FK538_06360 PF00989 PAS fold FK538_06365 PF18693 TRAM domain FK538_06365 PF04055 Radical SAM superfamily FK538_06365 PF00919 Uncharacterized protein family UPF0004 FK538_06370 PF00696 Amino acid kinase family FK538_06375 PF01765 Ribosome recycling factor FK538_06380 PF01255 Putative undecaprenyl diphosphate synthase FK538_06390 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FK538_06390 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FK538_06390 PF13288 DXP reductoisomerase C-terminal domain FK538_06395 PF02163 Peptidase family M50 FK538_06395 PF17820 PDZ domain FK538_06395 PF13180 PDZ domain FK538_06400 PF01103 Surface antigen FK538_06400 PF07244 Surface antigen variable number repeat FK538_06410 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FK538_06410 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_06415 PF07977 FabA-like domain FK538_06420 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FK538_06420 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_06425 PF01266 FAD dependent oxidoreductase FK538_06440 PF02542 YgbB family FK538_06450 PF00793 DAHP synthetase I family FK538_06455 PF01925 Sulfite exporter TauE/SafE FK538_06460 PF02684 Lipid-A-disaccharide synthetase FK538_06465 PF12833 Helix-turn-helix domain FK538_06465 PF12852 Cupin FK538_06470 PF00487 Fatty acid desaturase FK538_06475 PF00583 Acetyltransferase (GNAT) family FK538_06480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_06480 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_06480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_06485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_06485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_06485 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_06490 PF03109 ABC1 family FK538_06505 PF05175 Methyltransferase small domain FK538_06510 PF01264 Chorismate synthase FK538_06520 PF08173 Membrane bound YbgT-like protein FK538_06525 PF02322 Cytochrome bd terminal oxidase subunit II FK538_06530 PF01654 Cytochrome bd terminal oxidase subunit I FK538_06540 PF07290 Protein of unknown function (DUF1449) FK538_06550 PF00294 pfkB family carbohydrate kinase FK538_06560 PF00675 Insulinase (Peptidase family M16) FK538_06560 PF05193 Peptidase M16 inactive domain FK538_06560 PF08367 Peptidase M16C associated FK538_06565 PF02253 Phospholipase A1 FK538_06570 PF02386 Cation transport protein FK538_06575 PF02080 TrkA-C domain FK538_06575 PF02254 TrkA-N domain FK538_06580 PF00585 C-terminal regulatory domain of Threonine dehydratase FK538_06580 PF00291 Pyridoxal-phosphate dependent enzyme FK538_06585 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FK538_06595 PF02774 Semialdehyde dehydrogenase, dimerisation domain FK538_06595 PF01118 Semialdehyde dehydrogenase, NAD binding domain FK538_06605 PF02617 ATP-dependent Clp protease adaptor protein ClpS FK538_06610 PF10431 C-terminal, D2-small domain, of ClpB protein FK538_06610 PF00004 ATPase family associated with various cellular activities (AAA) FK538_06610 PF07724 AAA domain (Cdc48 subfamily) FK538_06610 PF17871 AAA lid domain FK538_06610 PF02861 Clp amino terminal domain, pathogenicity island component FK538_06615 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FK538_06625 PF00083 Sugar (and other) transporter FK538_06630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FK538_06630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FK538_06635 PF00440 Bacterial regulatory proteins, tetR family FK538_06645 PF00285 Citrate synthase, C-terminal domain FK538_06655 PF00994 Probable molybdopterin binding domain FK538_06655 PF02464 Competence-damaged protein FK538_06720 PF12832 MFS_1 like family FK538_06725 PF01425 Amidase FK538_06735 PF02785 Biotin carboxylase C-terminal domain FK538_06735 PF00289 Biotin carboxylase, N-terminal domain FK538_06735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FK538_06740 PF00364 Biotin-requiring enzyme FK538_06745 PF01220 Dehydroquinase class II FK538_06760 PF04143 Sulphur transport FK538_06770 PF00753 Metallo-beta-lactamase superfamily FK538_06775 PF12697 Alpha/beta hydrolase family FK538_06805 PF10431 C-terminal, D2-small domain, of ClpB protein FK538_06805 PF17871 AAA lid domain FK538_06805 PF07724 AAA domain (Cdc48 subfamily) FK538_06805 PF00004 ATPase family associated with various cellular activities (AAA) FK538_06930 PF08359 YsiA-like protein, C-terminal region FK538_06930 PF00440 Bacterial regulatory proteins, tetR family FK538_06950 PF01925 Sulfite exporter TauE/SafE FK538_06955 PF01613 Flavin reductase like domain FK538_06960 PF01717 Cobalamin-independent synthase, Catalytic domain FK538_06970 PF00223 Photosystem I psaA/psaB protein FK538_06970 PF00691 OmpA family FK538_06990 PF13098 Thioredoxin-like domain FK538_06995 PF08534 Redoxin FK538_07000 PF11412 Disulphide bond corrector protein DsbC FK538_07000 PF02683 Cytochrome C biogenesis protein transmembrane region FK538_07005 PF00072 Response regulator receiver domain FK538_07005 PF00486 Transcriptional regulatory protein, C terminal FK538_07010 PF08521 Two-component sensor kinase N-terminal FK538_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_07010 PF00512 His Kinase A (phospho-acceptor) domain FK538_07020 PF05199 GMC oxidoreductase FK538_07020 PF00732 GMC oxidoreductase FK538_07025 PF00171 Aldehyde dehydrogenase family FK538_07030 PF13977 BetI-type transcriptional repressor, C-terminal FK538_07030 PF00440 Bacterial regulatory proteins, tetR family FK538_07035 PF02028 BCCT, betaine/carnitine/choline family transporter FK538_07070 PF13533 Biotin-lipoyl like FK538_07085 PF00069 Protein kinase domain FK538_07085 PF03793 PASTA domain FK538_07090 PF01226 Formate/nitrite transporter FK538_07095 PF02560 Cyanate lyase C-terminal domain FK538_07105 PF07690 Major Facilitator Superfamily FK538_07130 PF00487 Fatty acid desaturase FK538_07145 PF07690 Major Facilitator Superfamily FK538_07150 PF03466 LysR substrate binding domain FK538_07150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_07155 PF13378 Enolase C-terminal domain-like FK538_07155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FK538_07160 PF02426 Muconolactone delta-isomerase FK538_07165 PF04444 Catechol dioxygenase N terminus FK538_07165 PF00775 Dioxygenase FK538_07170 PF00355 Rieske [2Fe-2S] domain FK538_07170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FK538_07175 PF00866 Ring hydroxylating beta subunit FK538_07180 PF00970 Oxidoreductase FAD-binding domain FK538_07180 PF00175 Oxidoreductase NAD-binding domain FK538_07180 PF00111 2Fe-2S iron-sulfur cluster binding domain FK538_07185 PF00106 short chain dehydrogenase FK538_07190 PF03594 Benzoate membrane transport protein FK538_07195 PF01144 Coenzyme A transferase FK538_07200 PF01144 Coenzyme A transferase FK538_07205 PF02803 Thiolase, C-terminal domain FK538_07205 PF00108 Thiolase, N-terminal domain FK538_07210 PF12146 Serine aminopeptidase, S33 FK538_07220 PF10005 zinc-ribbon domain FK538_07220 PF15887 Putative zinc-binding metallo-peptidase FK538_07225 PF00355 Rieske [2Fe-2S] domain FK538_07230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_07230 PF03466 LysR substrate binding domain FK538_07235 PF00005 ABC transporter FK538_07235 PF03459 TOBE domain FK538_07240 PF00528 Binding-protein-dependent transport system inner membrane component FK538_07250 PF03454 MoeA C-terminal region (domain IV) FK538_07250 PF00994 Probable molybdopterin binding domain FK538_07250 PF03453 MoeA N-terminal region (domain I and II) FK538_07255 PF00994 Probable molybdopterin binding domain FK538_07255 PF01967 MoaC family FK538_07260 PF02391 MoaE protein FK538_07270 PF06463 Molybdenum Cofactor Synthesis C FK538_07270 PF04055 Radical SAM superfamily FK538_07275 PF12804 MobA-like NTP transferase domain FK538_07280 PF00384 Molybdopterin oxidoreductase FK538_07280 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FK538_07280 PF04324 BFD-like [2Fe-2S] binding domain FK538_07280 PF01568 Molydopterin dinucleotide binding domain FK538_07285 PF04324 BFD-like [2Fe-2S] binding domain FK538_07285 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FK538_07285 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_07285 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FK538_07285 PF18267 Rubredoxin NAD+ reductase C-terminal domain FK538_07290 PF04324 BFD-like [2Fe-2S] binding domain FK538_07290 PF18267 Rubredoxin NAD+ reductase C-terminal domain FK538_07290 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FK538_07290 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FK538_07290 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_07295 PF07690 Major Facilitator Superfamily FK538_07305 PF00005 ABC transporter FK538_07310 PF00291 Pyridoxal-phosphate dependent enzyme FK538_07315 PF01553 Acyltransferase FK538_07325 PF01740 STAS domain FK538_07325 PF00916 Sulfate permease family FK538_07330 PF00375 Sodium:dicarboxylate symporter family FK538_07340 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FK538_07345 PF00924 Mechanosensitive ion channel FK538_07355 PF00005 ABC transporter FK538_07355 PF00664 ABC transporter transmembrane region FK538_07365 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FK538_07365 PF12833 Helix-turn-helix domain FK538_07370 PF01597 Glycine cleavage H-protein FK538_07375 PF07690 Major Facilitator Superfamily FK538_07380 PF00437 Type II/IV secretion system protein FK538_07385 PF00793 DAHP synthetase I family FK538_07390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FK538_07395 PF00324 Amino acid permease FK538_07400 PF00155 Aminotransferase class I and II FK538_07405 PF03707 Bacterial signalling protein N terminal repeat FK538_07405 PF00990 Diguanylate cyclase, GGDEF domain FK538_07405 PF00563 EAL domain FK538_07410 PF08240 Alcohol dehydrogenase GroES-like domain FK538_07410 PF00107 Zinc-binding dehydrogenase FK538_07415 PF13091 PLD-like domain FK538_07440 PF00106 short chain dehydrogenase FK538_07455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_07455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_07455 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_07460 PF03466 LysR substrate binding domain FK538_07460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_07465 PF00565 Staphylococcal nuclease homologue FK538_07480 PF01654 Cytochrome bd terminal oxidase subunit I FK538_07485 PF01047 MarR family FK538_07490 PF07690 Major Facilitator Superfamily FK538_07495 PF02311 AraC-like ligand binding domain FK538_07495 PF12833 Helix-turn-helix domain FK538_07500 PF12806 Acetyl-CoA dehydrogenase C-terminal like FK538_07500 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_07500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_07500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_07510 PF07715 TonB-dependent Receptor Plug Domain FK538_07510 PF00593 TonB dependent receptor FK538_07520 PF10415 Fumarase C C-terminus FK538_07520 PF00206 Lyase FK538_07525 PF16363 GDP-mannose 4,6 dehydratase FK538_07530 PF02635 DsrE/DsrF-like family FK538_07550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_07550 PF03466 LysR substrate binding domain FK538_07555 PF03788 LrgA family FK538_07560 PF04172 LrgB-like family FK538_07565 PF04073 Aminoacyl-tRNA editing domain FK538_07570 PF02690 Na+/Pi-cotransporter FK538_07580 PF01965 DJ-1/PfpI family FK538_07625 PF02881 SRP54-type protein, helical bundle domain FK538_07625 PF00448 SRP54-type protein, GTPase domain FK538_07630 PF00675 Insulinase (Peptidase family M16) FK538_07630 PF05193 Peptidase M16 inactive domain FK538_07660 PF00571 CBS domain FK538_07660 PF01743 Poly A polymerase head domain FK538_07665 PF00291 Pyridoxal-phosphate dependent enzyme FK538_07675 PF00004 ATPase family associated with various cellular activities (AAA) FK538_07675 PF01434 Peptidase family M41 FK538_07675 PF17862 AAA+ lid domain FK538_07685 PF05166 YcgL domain FK538_07690 PF00570 HRDC domain FK538_07690 PF01612 3'-5' exonuclease FK538_07695 PF02132 RecR protein FK538_07695 PF13662 Toprim domain FK538_07700 PF02575 YbaB/EbfC DNA-binding family FK538_07705 PF01053 Cys/Met metabolism PLP-dependent enzyme FK538_07715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FK538_07715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FK538_07725 PF01230 HIT domain FK538_07730 PF00267 Gram-negative porin FK538_07750 PF05698 Bacterial trigger factor protein (TF) C-terminus FK538_07755 PF00216 Bacterial DNA-binding protein FK538_07770 PF02082 Transcriptional regulator FK538_07775 PF00266 Aminotransferase class-V FK538_07780 PF01592 NifU-like N terminal domain FK538_07785 PF01521 Iron-sulphur cluster biosynthesis FK538_07790 PF00226 DnaJ domain FK538_07790 PF07743 HSCB C-terminal oligomerisation domain FK538_07795 PF00012 Hsp70 protein FK538_07800 PF00111 2Fe-2S iron-sulfur cluster binding domain FK538_07805 PF00211 Adenylate and Guanylate cyclase catalytic domain FK538_07815 PF17757 UvrB interaction domain FK538_07815 PF03461 TRCF domain FK538_07815 PF00270 DEAD/DEAH box helicase FK538_07815 PF00271 Helicase conserved C-terminal domain FK538_07815 PF02559 CarD-like/TRCF domain FK538_07830 PF03737 Aldolase/RraA FK538_07835 PF13460 NAD(P)H-binding FK538_07840 PF01649 Ribosomal protein S20 FK538_07860 PF00459 Inositol monophosphatase family FK538_07865 PF13419 Haloacid dehalogenase-like hydrolase FK538_07870 PF01479 S4 domain FK538_07875 PF00154 recA bacterial DNA recombination protein FK538_07880 PF02631 RecX family FK538_07895 PF01098 Cell cycle protein FK538_07900 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FK538_07905 PF04977 Septum formation initiator FK538_07910 PF03952 Enolase, N-terminal domain FK538_07910 PF00113 Enolase, C-terminal TIM barrel domain FK538_07915 PF00793 DAHP synthetase I family FK538_07920 PF06418 CTP synthase N-terminus FK538_07920 PF00117 Glutamine amidotransferase class-I FK538_07930 PF03466 LysR substrate binding domain FK538_07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_07935 PF00248 Aldo/keto reductase family FK538_07940 PF07690 Major Facilitator Superfamily FK538_07955 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_07955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK538_07970 PF02515 CoA-transferase family III FK538_07975 PF07690 Major Facilitator Superfamily FK538_07980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_07980 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_07980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_07985 PF03466 LysR substrate binding domain FK538_07985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_07990 PF02146 Sir2 family FK538_07995 PF10415 Fumarase C C-terminus FK538_07995 PF00206 Lyase FK538_08000 PF00474 Sodium:solute symporter family FK538_08005 PF01037 Lrp/AsnC ligand binding domain FK538_08010 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FK538_08010 PF14850 DNA-binding domain of Proline dehydrogenase FK538_08010 PF01619 Proline dehydrogenase FK538_08010 PF00171 Aldehyde dehydrogenase family FK538_08015 PF05958 tRNA (Uracil-5-)-methyltransferase FK538_08030 PF09992 Phosphodiester glycosidase FK538_08040 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FK538_08040 PF00749 tRNA synthetases class I (E and Q), catalytic domain FK538_08045 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FK538_08050 PF00149 Calcineurin-like phosphoesterase FK538_08055 PF03328 HpcH/HpaI aldolase/citrate lyase family FK538_08060 PF00881 Nitroreductase family FK538_08075 PF01116 Fructose-bisphosphate aldolase class-II FK538_08085 PF00162 Phosphoglycerate kinase FK538_08095 PF02545 Maf-like protein FK538_08100 PF08007 Cupin superfamily protein FK538_08105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_08105 PF07730 Histidine kinase FK538_08110 PF00072 Response regulator receiver domain FK538_08110 PF00196 Bacterial regulatory proteins, luxR family FK538_08115 PF01645 Conserved region in glutamate synthase FK538_08130 PF01565 FAD binding domain FK538_08130 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FK538_08135 PF01451 Low molecular weight phosphotyrosine protein phosphatase FK538_08140 PF00465 Iron-containing alcohol dehydrogenase FK538_08145 PF03061 Thioesterase superfamily FK538_08150 PF12170 DNA polymerase III tau subunit V interacting with alpha FK538_08150 PF12169 DNA polymerase III subunits gamma and tau domain III FK538_08150 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FK538_08160 PF00144 Beta-lactamase FK538_08165 PF01575 MaoC like domain FK538_08175 PF02803 Thiolase, C-terminal domain FK538_08175 PF00108 Thiolase, N-terminal domain FK538_08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_08185 PF03466 LysR substrate binding domain FK538_08190 PF00923 Transaldolase/Fructose-6-phosphate aldolase FK538_08190 PF13202 EF hand FK538_08195 PF01810 LysE type translocator FK538_08200 PF03594 Benzoate membrane transport protein FK538_08205 PF00135 Carboxylesterase family FK538_08210 PF00582 Universal stress protein family FK538_08215 PF00582 Universal stress protein family FK538_08225 PF01433 Peptidase family M1 domain FK538_08225 PF11940 Domain of unknown function (DUF3458) Ig-like fold FK538_08225 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FK538_08240 PF02110 Hydroxyethylthiazole kinase family FK538_08255 PF03616 Sodium/glutamate symporter FK538_08270 PF13737 Transposase DDE domain FK538_08280 PF00330 Aconitase family (aconitate hydratase) FK538_08280 PF06434 Aconitate hydratase 2 N-terminus FK538_08280 PF11791 Aconitate B N-terminal domain FK538_08300 PF17243 POTRA domain TamA domain 1 FK538_08300 PF07244 Surface antigen variable number repeat FK538_08300 PF01103 Surface antigen FK538_08305 PF07690 Major Facilitator Superfamily FK538_08310 PF03232 Ubiquinone biosynthesis protein COQ7 FK538_08320 PF02152 Dihydroneopterin aldolase FK538_08325 PF03109 ABC1 family FK538_08330 PF00899 ThiF family FK538_08340 PF13193 AMP-binding enzyme C-terminal domain FK538_08340 PF00501 AMP-binding enzyme FK538_08345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_08345 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_08345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_08350 PF00106 short chain dehydrogenase FK538_08365 PF01062 Bestrophin, RFP-TM, chloride channel FK538_08370 PF17827 PrmC N-terminal domain FK538_08370 PF05175 Methyltransferase small domain FK538_08375 PF00472 RF-1 domain FK538_08375 PF03462 PCRF domain FK538_08390 PF00296 Luciferase-like monooxygenase FK538_08400 PF03618 Kinase/pyrophosphorylase FK538_08405 PF00391 PEP-utilising enzyme, mobile domain FK538_08405 PF02896 PEP-utilising enzyme, TIM barrel domain FK538_08405 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FK538_08415 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FK538_08415 PF06481 COX Aromatic Rich Motif FK538_08420 PF00115 Cytochrome C and Quinol oxidase polypeptide I FK538_08425 PF00510 Cytochrome c oxidase subunit III FK538_08430 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FK538_08435 PF01040 UbiA prenyltransferase family FK538_08440 PF01250 Ribosomal protein S6 FK538_08445 PF01084 Ribosomal protein S18 FK538_08450 PF03948 Ribosomal protein L9, C-terminal domain FK538_08450 PF01281 Ribosomal protein L9, N-terminal domain FK538_08455 PF03796 DnaB-like helicase C terminal domain FK538_08455 PF00772 DnaB-like helicase N terminal domain FK538_08460 PF00842 Alanine racemase, C-terminal domain FK538_08460 PF01168 Alanine racemase, N-terminal domain FK538_08475 PF01841 Transglutaminase-like superfamily FK538_08475 PF08379 Bacterial transglutaminase-like N-terminal region FK538_08485 PF14403 Circularly permuted ATP-grasp type 2 FK538_08495 PF13932 GidA associated domain FK538_08495 PF01134 Glucose inhibited division protein A FK538_08525 PF02954 Bacterial regulatory protein, Fis family FK538_08530 PF02142 MGS-like domain FK538_08530 PF01808 AICARFT/IMPCHase bienzyme FK538_08535 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FK538_08535 PF02843 Phosphoribosylglycinamide synthetase, C domain FK538_08535 PF02844 Phosphoribosylglycinamide synthetase, N domain FK538_08545 PF03180 NLPA lipoprotein FK538_08550 PF09383 NIL domain FK538_08550 PF00005 ABC transporter FK538_08555 PF00528 Binding-protein-dependent transport system inner membrane component FK538_08565 PF07733 Bacterial DNA polymerase III alpha NTPase domain FK538_08565 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FK538_08565 PF14579 Helix-hairpin-helix motif FK538_08565 PF02811 PHP domain FK538_08565 PF01336 OB-fold nucleic acid binding domain FK538_08570 PF00588 SpoU rRNA Methylase family FK538_08575 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_08590 PF00465 Iron-containing alcohol dehydrogenase FK538_08595 PF01624 MutS domain I FK538_08595 PF05192 MutS domain III FK538_08595 PF05190 MutS family domain IV FK538_08595 PF00488 MutS domain V FK538_08595 PF05188 MutS domain II FK538_08600 PF11953 Domain of unknown function (DUF3470) FK538_08600 PF00037 4Fe-4S binding domain FK538_08610 PF01596 O-methyltransferase FK538_08625 PF01205 Uncharacterized protein family UPF0029 FK538_08630 PF00529 HlyD membrane-fusion protein of T1SS FK538_08635 PF03412 Peptidase C39 family FK538_08635 PF00005 ABC transporter FK538_08635 PF00664 ABC transporter transmembrane region FK538_08640 PF02321 Outer membrane efflux protein FK538_08645 PF00005 ABC transporter FK538_08645 PF12399 Branched-chain amino acid ATP-binding cassette transporter FK538_08650 PF03968 OstA-like protein FK538_08665 PF00571 CBS domain FK538_08665 PF01380 SIS domain FK538_08675 PF01406 tRNA synthetases class I (C) catalytic domain FK538_08675 PF09190 DALR domain FK538_08685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FK538_08685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FK538_08690 PF04408 Helicase associated domain (HA2) FK538_08690 PF00270 DEAD/DEAH box helicase FK538_08690 PF11898 Domain of unknown function (DUF3418) FK538_08690 PF00271 Helicase conserved C-terminal domain FK538_08690 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FK538_08695 PF00578 AhpC/TSA family FK538_08695 PF10417 C-terminal domain of 1-Cys peroxiredoxin FK538_08705 PF15887 Putative zinc-binding metallo-peptidase FK538_08705 PF10005 zinc-ribbon domain FK538_08720 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_08720 PF13192 Thioredoxin domain FK538_08730 PF13006 Insertion element 4 transposase N-terminal FK538_08730 PF01609 Transposase DDE domain FK538_08755 PF03060 Nitronate monooxygenase FK538_08765 PF01207 Dihydrouridine synthase (Dus) FK538_08770 PF00313 'Cold-shock' DNA-binding domain FK538_08785 PF07759 Protein of unknown function (DUF1615) FK538_08795 PF00487 Fatty acid desaturase FK538_08800 PF00175 Oxidoreductase NAD-binding domain FK538_08800 PF00111 2Fe-2S iron-sulfur cluster binding domain FK538_08800 PF00970 Oxidoreductase FAD-binding domain FK538_08805 PF00440 Bacterial regulatory proteins, tetR family FK538_08810 PF12697 Alpha/beta hydrolase family FK538_08820 PF12137 RNA polymerase recycling family C-terminal FK538_08820 PF00271 Helicase conserved C-terminal domain FK538_08820 PF18339 RapA N-terminal Tudor like domain 1 FK538_08820 PF18337 RapA N-terminal Tudor like domain FK538_08820 PF00176 SNF2 family N-terminal domain FK538_08825 PF00849 RNA pseudouridylate synthase FK538_08845 PF13005 zinc-finger binding domain of transposase IS66 FK538_08845 PF13007 Transposase C of IS166 homeodomain FK538_08845 PF13817 IS66 C-terminal element FK538_08845 PF03050 Transposase IS66 family FK538_08860 PF03928 Haem-degrading FK538_08865 PF00202 Aminotransferase class-III FK538_08870 PF02581 Thiamine monophosphate synthase FK538_08905 PF05193 Peptidase M16 inactive domain FK538_08905 PF00675 Insulinase (Peptidase family M16) FK538_08910 PF02567 Phenazine biosynthesis-like protein FK538_08915 PF01613 Flavin reductase like domain FK538_08925 PF01551 Peptidase family M23 FK538_08930 PF00180 Isocitrate/isopropylmalate dehydrogenase FK538_08935 PF00849 RNA pseudouridylate synthase FK538_08950 PF00768 D-alanyl-D-alanine carboxypeptidase FK538_08950 PF07943 Penicillin-binding protein 5, C-terminal domain FK538_08955 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_08960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK538_08970 PF03883 Peroxide stress protein YaaA FK538_08985 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FK538_08990 PF00155 Aminotransferase class I and II FK538_08995 PF00800 Prephenate dehydratase FK538_08995 PF01817 Chorismate mutase type II FK538_08995 PF01842 ACT domain FK538_09000 PF01965 DJ-1/PfpI family FK538_09005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_09005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_09005 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_09010 PF00375 Sodium:dicarboxylate symporter family FK538_09015 PF00591 Glycosyl transferase family, a/b domain FK538_09015 PF02885 Glycosyl transferase family, helical bundle domain FK538_09020 PF07023 Protein of unknown function (DUF1315) FK538_09025 PF01513 ATP-NAD kinase FK538_09030 PF00912 Transglycosylase FK538_09030 PF00905 Penicillin binding protein transpeptidase domain FK538_09030 PF14814 Bifunctional transglycosylase second domain FK538_09040 PF00293 NUDIX domain FK538_09050 PF08521 Two-component sensor kinase N-terminal FK538_09050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_09050 PF00512 His Kinase A (phospho-acceptor) domain FK538_09055 PF00486 Transcriptional regulatory protein, C terminal FK538_09055 PF00072 Response regulator receiver domain FK538_09065 PF00437 Type II/IV secretion system protein FK538_09065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FK538_09090 PF03050 Transposase IS66 family FK538_09090 PF13005 zinc-finger binding domain of transposase IS66 FK538_09090 PF13817 IS66 C-terminal element FK538_09090 PF13007 Transposase C of IS166 homeodomain FK538_09100 PF18389 TrmO C-terminal domain FK538_09100 PF01980 tRNA-methyltransferase O FK538_09105 PF00175 Oxidoreductase NAD-binding domain FK538_09105 PF00970 Oxidoreductase FAD-binding domain FK538_09125 PF13411 MerR HTH family regulatory protein FK538_09130 PF03358 NADPH-dependent FMN reductase FK538_09135 PF01758 Sodium Bile acid symporter family FK538_09145 PF01022 Bacterial regulatory protein, arsR family FK538_09150 PF03960 ArsC family FK538_09160 PF00037 4Fe-4S binding domain FK538_09165 PF13192 Thioredoxin domain FK538_09165 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_09175 PF05816 Toxic anion resistance protein (TelA) FK538_09185 PF14760 Rnk N-terminus FK538_09185 PF01272 Transcription elongation factor, GreA/GreB, C-term FK538_09190 PF00464 Serine hydroxymethyltransferase FK538_09245 PF00005 ABC transporter FK538_09250 PF01061 ABC-2 type transporter FK538_09255 PF14489 QueF-like protein FK538_09255 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FK538_09265 PF13406 Transglycosylase SLT domain FK538_09270 PF03330 Lytic transglycolase FK538_09270 PF05036 Sporulation related domain FK538_09285 PF00889 Elongation factor TS FK538_09290 PF00318 Ribosomal protein S2 FK538_09295 PF00557 Metallopeptidase family M24 FK538_09310 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FK538_09315 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_09315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FK538_09320 PF04055 Radical SAM superfamily FK538_09325 PF09317 Domain of unknown function (DUF1974) FK538_09325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_09325 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_09325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_09350 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FK538_09350 PF05221 S-adenosyl-L-homocysteine hydrolase FK538_09355 PF02219 Methylenetetrahydrofolate reductase FK538_09360 PF04452 RNA methyltransferase FK538_09365 PF03707 Bacterial signalling protein N terminal repeat FK538_09365 PF00563 EAL domain FK538_09365 PF00990 Diguanylate cyclase, GGDEF domain FK538_09370 PF01515 Phosphate acetyl/butaryl transferase FK538_09370 PF03949 Malic enzyme, NAD binding domain FK538_09370 PF00390 Malic enzyme, N-terminal domain FK538_09375 PF12627 Probable RNA and SrmB- binding site of polymerase A FK538_09375 PF01743 Poly A polymerase head domain FK538_09380 PF00152 tRNA synthetases class II (D, K and N) FK538_09385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FK538_09385 PF11890 Domain of unknown function (DUF3410) FK538_09385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FK538_09395 PF00376 MerR family regulatory protein FK538_09395 PF09278 MerR, DNA binding FK538_09400 PF00403 Heavy-metal-associated domain FK538_09410 PF00970 Oxidoreductase FAD-binding domain FK538_09410 PF00175 Oxidoreductase NAD-binding domain FK538_09410 PF00111 2Fe-2S iron-sulfur cluster binding domain FK538_09415 PF13737 Transposase DDE domain FK538_09425 PF13356 Arm DNA-binding domain FK538_09425 PF00589 Phage integrase family FK538_09435 PF00171 Aldehyde dehydrogenase family FK538_09500 PF05188 MutS domain II FK538_09500 PF00488 MutS domain V FK538_09500 PF01624 MutS domain I FK538_09500 PF05192 MutS domain III FK538_09500 PF05190 MutS family domain IV FK538_09510 PF13007 Transposase C of IS166 homeodomain FK538_09510 PF13817 IS66 C-terminal element FK538_09510 PF03050 Transposase IS66 family FK538_09510 PF13005 zinc-finger binding domain of transposase IS66 FK538_09570 PF11867 Domain of unknown function (DUF3387) FK538_09570 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FK538_09570 PF18766 SWI2/SNF2 ATPase FK538_09590 PF12161 HsdM N-terminal domain FK538_09590 PF02384 N-6 DNA Methylase FK538_09605 PF01381 Helix-turn-helix FK538_09625 PF13359 DDE superfamily endonuclease FK538_09625 PF13613 Helix-turn-helix of DDE superfamily endonuclease FK538_09655 PF02661 Fic/DOC family FK538_09705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK538_09705 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_09715 PF00764 Arginosuccinate synthase FK538_09720 PF01590 GAF domain FK538_09720 PF00563 EAL domain FK538_09720 PF00990 Diguanylate cyclase, GGDEF domain FK538_09720 PF00360 Phytochrome region FK538_09725 PF01979 Amidohydrolase family FK538_09730 PF00929 Exonuclease FK538_09750 PF00324 Amino acid permease FK538_09775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK538_09775 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_09780 PF00005 ABC transporter FK538_09780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FK538_09785 PF12911 N-terminal TM domain of oligopeptide transport permease C FK538_09785 PF00528 Binding-protein-dependent transport system inner membrane component FK538_09790 PF00528 Binding-protein-dependent transport system inner membrane component FK538_09795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FK538_09800 PF01464 Transglycosylase SLT domain FK538_09800 PF01476 LysM domain FK538_09805 PF00929 Exonuclease FK538_09815 PF00293 NUDIX domain FK538_09815 PF09297 NADH pyrophosphatase zinc ribbon domain FK538_09820 PF00135 Carboxylesterase family FK538_09825 PF04972 BON domain FK538_09830 PF02021 Uncharacterised protein family UPF0102 FK538_09835 PF04348 LppC putative lipoprotein FK538_09840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FK538_09850 PF01494 FAD binding domain FK538_09855 PF01494 FAD binding domain FK538_09865 PF05195 Aminopeptidase P, N-terminal domain FK538_09865 PF00557 Metallopeptidase family M24 FK538_09870 PF03695 Uncharacterised protein family (UPF0149) FK538_09895 PF13737 Transposase DDE domain FK538_09900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_09900 PF03466 LysR substrate binding domain FK538_09905 PF01565 FAD binding domain FK538_09905 PF09330 D-lactate dehydrogenase, membrane binding FK538_09910 PF01070 FMN-dependent dehydrogenase FK538_09915 PF07729 FCD domain FK538_09915 PF00392 Bacterial regulatory proteins, gntR family FK538_09920 PF02652 L-lactate permease FK538_09950 PF01812 5-formyltetrahydrofolate cyclo-ligase family FK538_09955 PF02190 ATP-dependent protease La (LON) substrate-binding domain FK538_09955 PF05362 Lon protease (S16) C-terminal proteolytic domain FK538_09955 PF00004 ATPase family associated with various cellular activities (AAA) FK538_09960 PF04389 Peptidase family M28 FK538_09965 PF02590 Predicted SPOUT methyltransferase FK538_09970 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FK538_09980 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FK538_09980 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FK538_09985 PF04060 Putative Fe-S cluster FK538_09990 PF10576 Iron-sulfur binding domain of endonuclease III FK538_09990 PF00633 Helix-hairpin-helix motif FK538_09990 PF00730 HhH-GPD superfamily base excision DNA repair protein FK538_10000 PF05191 Adenylate kinase, active site lid FK538_10015 PF03717 Penicillin-binding Protein dimerisation domain FK538_10015 PF00905 Penicillin binding protein transpeptidase domain FK538_10030 PF02492 CobW/HypB/UreG, nucleotide-binding domain FK538_10035 PF01730 UreF FK538_10040 PF05194 UreE urease accessory protein, C-terminal domain FK538_10040 PF02814 UreE urease accessory protein, N-terminal domain FK538_10050 PF00449 Urease alpha-subunit, N-terminal domain FK538_10050 PF01979 Amidohydrolase family FK538_10055 PF00699 Urease beta subunit FK538_10060 PF00547 Urease, gamma subunit FK538_10065 PF01774 UreD urease accessory protein FK538_10080 PF01553 Acyltransferase FK538_10085 PF04170 NlpE N-terminal domain FK538_10085 PF17185 NlpE C-terminal OB domain FK538_10095 PF00463 Isocitrate lyase family FK538_10100 PF03466 LysR substrate binding domain FK538_10100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_10105 PF03471 Transporter associated domain FK538_10105 PF01595 Cyclin M transmembrane N-terminal domain FK538_10105 PF00571 CBS domain FK538_10120 PF16197 Ketoacyl-synthetase C-terminal extension FK538_10120 PF08240 Alcohol dehydrogenase GroES-like domain FK538_10120 PF08659 KR domain FK538_10120 PF14765 Polyketide synthase dehydratase FK538_10120 PF02801 Beta-ketoacyl synthase, C-terminal domain FK538_10120 PF00698 Acyl transferase domain FK538_10120 PF00550 Phosphopantetheine attachment site FK538_10120 PF00109 Beta-ketoacyl synthase, N-terminal domain FK538_10125 PF00085 Thioredoxin FK538_10140 PF00009 Elongation factor Tu GTP binding domain FK538_10145 PF01507 Phosphoadenosine phosphosulfate reductase family FK538_10155 PF00152 tRNA synthetases class II (D, K and N) FK538_10155 PF01336 OB-fold nucleic acid binding domain FK538_10165 PF00156 Phosphoribosyl transferase domain FK538_10170 PF00301 Rubredoxin FK538_10175 PF18113 Rubredoxin binding C-terminal domain FK538_10175 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_10180 PF00561 alpha/beta hydrolase fold FK538_10185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_10185 PF03466 LysR substrate binding domain FK538_10190 PF13090 Polyphosphate kinase C-terminal domain 2 FK538_10190 PF17941 Polyphosphate kinase C-terminal domain 1 FK538_10190 PF13089 Polyphosphate kinase N-terminal domain FK538_10190 PF02503 Polyphosphate kinase middle domain FK538_10195 PF00912 Transglycosylase FK538_10200 PF01694 Rhomboid family FK538_10210 PF00005 ABC transporter FK538_10215 PF13472 GDSL-like Lipase/Acylhydrolase family FK538_10220 PF00484 Carbonic anhydrase FK538_10225 PF00561 alpha/beta hydrolase fold FK538_10235 PF07715 TonB-dependent Receptor Plug Domain FK538_10235 PF00593 TonB dependent receptor FK538_10240 PF01106 NifU-like domain FK538_10240 PF01521 Iron-sulphur cluster biosynthesis FK538_10260 PF01384 Phosphate transporter family FK538_10265 PF02965 Vitamin B12 dependent methionine synthase, activation domain FK538_10265 PF02607 B12 binding domain FK538_10265 PF02310 B12 binding domain FK538_10265 PF00809 Pterin binding enzyme FK538_10265 PF02574 Homocysteine S-methyltransferase FK538_10275 PF00083 Sugar (and other) transporter FK538_10275 PF08946 Osmosensory transporter coiled coil FK538_10305 PF00990 Diguanylate cyclase, GGDEF domain FK538_10310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK538_10315 PF07152 YaeQ protein FK538_10320 PF07683 Cobalamin synthesis protein cobW C-terminal domain FK538_10320 PF02492 CobW/HypB/UreG, nucleotide-binding domain FK538_10330 PF01494 FAD binding domain FK538_10340 PF01797 Transposase IS200 like FK538_10350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_10350 PF03466 LysR substrate binding domain FK538_10355 PF07690 Major Facilitator Superfamily FK538_10360 PF16859 Tetracyclin repressor-like, C-terminal domain FK538_10360 PF00440 Bacterial regulatory proteins, tetR family FK538_10365 PF03061 Thioesterase superfamily FK538_10375 PF01734 Patatin-like phospholipase FK538_10380 PF02417 Chromate transporter FK538_10385 PF01235 Sodium:alanine symporter family FK538_10390 PF03616 Sodium/glutamate symporter FK538_10400 PF00881 Nitroreductase family FK538_10405 PF07690 Major Facilitator Superfamily FK538_10410 PF12805 FUSC-like inner membrane protein yccS FK538_10420 PF00667 FAD binding domain FK538_10420 PF00258 Flavodoxin FK538_10420 PF00175 Oxidoreductase NAD-binding domain FK538_10475 PF01476 LysM domain FK538_10475 PF03734 L,D-transpeptidase catalytic domain FK538_10480 PF04304 Protein of unknown function (DUF454) FK538_10490 PF08085 Entericidin EcnA/B family FK538_10495 PF01546 Peptidase family M20/M25/M40 FK538_10495 PF07687 Peptidase dimerisation domain FK538_10505 PF01584 CheW-like domain FK538_10505 PF02895 Signal transducing histidine kinase, homodimeric domain FK538_10505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_10505 PF01627 Hpt domain FK538_10505 PF00072 Response regulator receiver domain FK538_10510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FK538_10510 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FK538_10515 PF01584 CheW-like domain FK538_10520 PF00072 Response regulator receiver domain FK538_10525 PF00072 Response regulator receiver domain FK538_10535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FK538_10540 PF00873 AcrB/AcrD/AcrF family FK538_10545 PF03129 Anticodon binding domain FK538_10545 PF04073 Aminoacyl-tRNA editing domain FK538_10545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FK538_10570 PF00692 dUTPase FK538_10580 PF16868 NMT1-like family FK538_10595 PF10609 NUBPL iron-transfer P-loop NTPase FK538_10600 PF09334 tRNA synthetases class I (M) FK538_10600 PF01588 Putative tRNA binding domain FK538_10635 PF00291 Pyridoxal-phosphate dependent enzyme FK538_10660 PF05552 Conserved TM helix FK538_10680 PF00970 Oxidoreductase FAD-binding domain FK538_10680 PF00175 Oxidoreductase NAD-binding domain FK538_10685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FK538_10685 PF03466 LysR substrate binding domain FK538_10690 PF00313 'Cold-shock' DNA-binding domain FK538_10695 PF00313 'Cold-shock' DNA-binding domain FK538_10705 PF00361 Proton-conducting membrane transporter FK538_10710 PF00361 Proton-conducting membrane transporter FK538_10715 PF00361 Proton-conducting membrane transporter FK538_10715 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FK538_10720 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FK538_10725 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FK538_10730 PF12838 4Fe-4S dicluster domain FK538_10735 PF00146 NADH dehydrogenase FK538_10740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FK538_10740 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FK538_10740 PF00384 Molybdopterin oxidoreductase FK538_10745 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FK538_10745 PF10531 SLBB domain FK538_10745 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FK538_10755 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FK538_10755 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FK538_10760 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FK538_10765 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FK538_10775 PF00348 Polyprenyl synthetase FK538_10780 PF04303 PrpF protein FK538_10785 PF00324 Amino acid permease FK538_10805 PF14497 Glutathione S-transferase, C-terminal domain FK538_10805 PF02798 Glutathione S-transferase, N-terminal domain FK538_10815 PF01144 Coenzyme A transferase FK538_10820 PF01144 Coenzyme A transferase FK538_10840 PF01507 Phosphoadenosine phosphosulfate reductase family FK538_10845 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FK538_10845 PF06974 Protein of unknown function (DUF1298) FK538_10850 PF00575 S1 RNA binding domain FK538_10850 PF10150 Ribonuclease E/G family FK538_10855 PF02545 Maf-like protein FK538_10860 PF04093 rod shape-determining protein MreD FK538_10865 PF04085 rod shape-determining protein MreC FK538_10875 PF02686 Glu-tRNAGln amidotransferase C subunit FK538_10880 PF01425 Amidase FK538_10885 PF02637 GatB domain FK538_10885 PF02934 GatB/GatE catalytic domain FK538_10905 PF00892 EamA-like transporter family FK538_10920 PF05992 SbmA/BacA-like family FK538_10935 PF00535 Glycosyl transferase family 2 FK538_10940 PF14883 Hypothetical glycosyl hydrolase family 13 FK538_10940 PF01522 Polysaccharide deacetylase FK538_10945 PF03848 Tellurite resistance protein TehB FK538_10945 PF09313 Domain of unknown function (DUF1971) FK538_10965 PF02661 Fic/DOC family FK538_10965 PF13784 Fic/DOC family N-terminal FK538_10975 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FK538_10990 PF01039 Carboxyl transferase domain FK538_10995 PF06857 Malonate decarboxylase delta subunit (MdcD) FK538_11000 PF16957 Malonate decarboxylase, alpha subunit, transporter FK538_11015 PF07729 FCD domain FK538_11015 PF00392 Bacterial regulatory proteins, gntR family FK538_11030 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FK538_11030 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FK538_11035 PF13006 Insertion element 4 transposase N-terminal FK538_11035 PF01609 Transposase DDE domain FK538_11040 PF03061 Thioesterase superfamily FK538_11045 PF00490 Delta-aminolevulinic acid dehydratase FK538_11050 PF01266 FAD dependent oxidoreductase FK538_11060 PF12320 Type 5 capsule protein repressor C-terminal domain FK538_11060 PF00149 Calcineurin-like phosphoesterase FK538_11075 PF01168 Alanine racemase, N-terminal domain FK538_11080 PF00437 Type II/IV secretion system protein FK538_11085 PF00437 Type II/IV secretion system protein FK538_11090 PF01475 Ferric uptake regulator family FK538_11095 PF04355 SmpA / OmlA family FK538_11100 PF03658 RnfH family Ubiquitin FK538_11110 PF01814 Hemerythrin HHE cation binding domain FK538_11115 PF13230 Glutamine amidotransferases class-II FK538_11125 PF00696 Amino acid kinase family FK538_11130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FK538_11130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FK538_11130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FK538_11130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FK538_11135 PF00692 dUTPase FK538_11140 PF13361 UvrD-like helicase C-terminal domain FK538_11140 PF00580 UvrD/REP helicase N-terminal domain FK538_11145 PF13488 Glycine zipper FK538_11145 PF00691 OmpA family FK538_11150 PF01553 Acyltransferase FK538_11160 PF03775 Septum formation inhibitor MinC, C-terminal domain FK538_11165 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FK538_11170 PF03776 Septum formation topological specificity factor MinE FK538_11180 PF09397 Ftsk gamma domain FK538_11180 PF17854 FtsK alpha domain FK538_11180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FK538_11180 PF01580 FtsK/SpoIIIE family FK538_11185 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_11190 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FK538_11195 PF04376 Arginine-tRNA-protein transferase, N terminus FK538_11195 PF04377 Arginine-tRNA-protein transferase, C terminus FK538_11200 PF00583 Acetyltransferase (GNAT) family FK538_11210 PF00009 Elongation factor Tu GTP binding domain FK538_11210 PF03144 Elongation factor Tu domain 2 FK538_11210 PF03143 Elongation factor Tu C-terminal domain FK538_11215 PF03144 Elongation factor Tu domain 2 FK538_11215 PF00009 Elongation factor Tu GTP binding domain FK538_11215 PF03764 Elongation factor G, domain IV FK538_11215 PF14492 Elongation Factor G, domain II FK538_11215 PF00679 Elongation factor G C-terminus FK538_11220 PF00177 Ribosomal protein S7p/S5e FK538_11225 PF00164 Ribosomal protein S12/S23 FK538_11235 PF02801 Beta-ketoacyl synthase, C-terminal domain FK538_11235 PF00109 Beta-ketoacyl synthase, N-terminal domain FK538_11245 PF00324 Amino acid permease FK538_11250 PF01042 Endoribonuclease L-PSP FK538_11255 PF01168 Alanine racemase, N-terminal domain FK538_11255 PF00842 Alanine racemase, C-terminal domain FK538_11260 PF01266 FAD dependent oxidoreductase FK538_11265 PF01037 Lrp/AsnC ligand binding domain FK538_11270 PF13419 Haloacid dehalogenase-like hydrolase FK538_11275 PF08543 Phosphomethylpyrimidine kinase FK538_11275 PF03070 TENA/THI-4/PQQC family FK538_11275 PF02581 Thiamine monophosphate synthase FK538_11285 PF08378 Nuclease-related domain FK538_11290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FK538_11290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FK538_11295 PF00893 Small Multidrug Resistance protein FK538_11305 PF07732 Multicopper oxidase FK538_11305 PF07731 Multicopper oxidase FK538_11305 PF00394 Multicopper oxidase FK538_11315 PF00834 Ribulose-phosphate 3 epimerase family FK538_11330 PF05987 Bacterial protein of unknown function (DUF898) FK538_11335 PF00756 Putative esterase FK538_11345 PF04445 Putative SAM-dependent methyltransferase FK538_11350 PF02673 Bacitracin resistance protein BacA FK538_11355 PF00814 Glycoprotease family FK538_11360 PF00132 Bacterial transferase hexapeptide (six repeats) FK538_11365 PF00293 NUDIX domain FK538_11405 PF00425 chorismate binding enzyme FK538_11405 PF04715 Anthranilate synthase component I, N terminal region FK538_11410 PF00155 Aminotransferase class I and II FK538_11415 PF00815 Histidinol dehydrogenase FK538_11420 PF01634 ATP phosphoribosyltransferase FK538_11425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FK538_11430 PF01722 BolA-like protein FK538_11435 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FK538_11440 PF00309 Sigma-54 factor, Activator interacting domain (AID) FK538_11440 PF04963 Sigma-54 factor, core binding domain FK538_11440 PF04552 Sigma-54, DNA binding domain FK538_11480 PF17152 Periplasmic sensor domain FK538_11480 PF00990 Diguanylate cyclase, GGDEF domain FK538_11510 PF02445 Quinolinate synthetase A protein FK538_11515 PF01960 ArgJ family FK538_11525 PF02810 SEC-C motif FK538_11525 PF07517 SecA DEAD-like domain FK538_11525 PF01043 SecA preprotein cross-linking domain FK538_11525 PF07516 SecA Wing and Scaffold domain FK538_11530 PF10417 C-terminal domain of 1-Cys peroxiredoxin FK538_11530 PF00578 AhpC/TSA family FK538_11545 PF08245 Mur ligase middle domain FK538_11545 PF02875 Mur ligase family, glutamate ligase domain FK538_11550 PF01039 Carboxyl transferase domain FK538_11555 PF00290 Tryptophan synthase alpha chain FK538_11585 PF00291 Pyridoxal-phosphate dependent enzyme FK538_11590 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FK538_11595 PF07715 TonB-dependent Receptor Plug Domain FK538_11595 PF00593 TonB dependent receptor FK538_11600 PF01923 Cobalamin adenosyltransferase FK538_11620 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FK538_11625 PF04237 YjbR FK538_11635 PF00072 Response regulator receiver domain FK538_11635 PF00486 Transcriptional regulatory protein, C terminal FK538_11640 PF00672 HAMP domain FK538_11640 PF00512 His Kinase A (phospho-acceptor) domain FK538_11640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_11650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_11650 PF12806 Acetyl-CoA dehydrogenase C-terminal like FK538_11650 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_11650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_11655 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_11655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_11655 PF12806 Acetyl-CoA dehydrogenase C-terminal like FK538_11655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_11660 PF06146 Phosphate-starvation-inducible E FK538_11680 PF07715 TonB-dependent Receptor Plug Domain FK538_11680 PF00593 TonB dependent receptor FK538_11690 PF00152 tRNA synthetases class II (D, K and N) FK538_11690 PF02938 GAD domain FK538_11690 PF01336 OB-fold nucleic acid binding domain FK538_11705 PF00535 Glycosyl transferase family 2 FK538_11710 PF00534 Glycosyl transferases group 1 FK538_11710 PF13439 Glycosyltransferase Family 4 FK538_11730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FK538_11730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FK538_11735 PF01063 Amino-transferase class IV FK538_11740 PF08335 GlnD PII-uridylyltransferase FK538_11740 PF03710 Glutamate-ammonia ligase adenylyltransferase FK538_11745 PF00989 PAS fold FK538_11745 PF13426 PAS domain FK538_11745 PF00512 His Kinase A (phospho-acceptor) domain FK538_11745 PF13188 PAS domain FK538_11745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_11750 PF03971 Monomeric isocitrate dehydrogenase FK538_11760 PF02547 Queuosine biosynthesis protein FK538_11770 PF04011 LemA family FK538_11780 PF01702 Queuine tRNA-ribosyltransferase FK538_11785 PF02699 Preprotein translocase subunit FK538_11790 PF02355 Protein export membrane protein FK538_11790 PF07549 SecD/SecF GG Motif FK538_11790 PF13721 SecD export protein N-terminal TM region FK538_11795 PF07549 SecD/SecF GG Motif FK538_11795 PF02355 Protein export membrane protein FK538_11800 PF01648 4'-phosphopantetheinyl transferase superfamily FK538_11805 PF02824 TGS domain FK538_11805 PF04607 Region found in RelA / SpoT proteins FK538_11805 PF13291 ACT domain FK538_11810 PF05958 tRNA (Uracil-5-)-methyltransferase FK538_11820 PF00291 Pyridoxal-phosphate dependent enzyme FK538_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_11825 PF00512 His Kinase A (phospho-acceptor) domain FK538_11825 PF00072 Response regulator receiver domain FK538_11825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FK538_11825 PF00672 HAMP domain FK538_11825 PF01627 Hpt domain FK538_11830 PF00378 Enoyl-CoA hydratase/isomerase FK538_11835 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FK538_11835 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FK538_11840 PF01261 Xylose isomerase-like TIM barrel FK538_11850 PF02233 NAD(P) transhydrogenase beta subunit FK538_11855 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FK538_11860 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FK538_11860 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FK538_11865 PF00892 EamA-like transporter family FK538_11870 PF07690 Major Facilitator Superfamily FK538_11900 PF01207 Dihydrouridine synthase (Dus) FK538_11905 PF00899 ThiF family FK538_11910 PF01026 TatD related DNase FK538_11925 PF03144 Elongation factor Tu domain 2 FK538_11925 PF00009 Elongation factor Tu GTP binding domain FK538_11925 PF16658 Class II release factor RF3, C-terminal domain FK538_11940 PF00563 EAL domain FK538_11940 PF00990 Diguanylate cyclase, GGDEF domain FK538_11940 PF03707 Bacterial signalling protein N terminal repeat FK538_11945 PF03572 Peptidase family S41 FK538_11945 PF11818 C-terminal domain of tail specific protease (DUF3340) FK538_11945 PF00595 PDZ domain FK538_11945 PF17804 Tail specific protease N-terminal domain FK538_11950 PF00933 Glycosyl hydrolase family 3 N terminal domain FK538_11965 PF00171 Aldehyde dehydrogenase family FK538_11975 PF00871 Acetokinase family FK538_11980 PF01515 Phosphate acetyl/butaryl transferase FK538_11980 PF07085 DRTGG domain FK538_12000 PF05681 Fumarate hydratase (Fumerase) FK538_12000 PF05683 Fumarase C-terminus FK538_12010 PF07724 AAA domain (Cdc48 subfamily) FK538_12010 PF10431 C-terminal, D2-small domain, of ClpB protein FK538_12010 PF06689 ClpX C4-type zinc finger FK538_12015 PF00574 Clp protease FK538_12020 PF05698 Bacterial trigger factor protein (TF) C-terminus FK538_12020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK538_12020 PF05697 Bacterial trigger factor protein (TF) FK538_12025 PF00593 TonB dependent receptor FK538_12025 PF07715 TonB-dependent Receptor Plug Domain FK538_12030 PF00593 TonB dependent receptor FK538_12030 PF07715 TonB-dependent Receptor Plug Domain FK538_12035 PF18331 PKHD-type hydroxylase C-terminal domain FK538_12035 PF13640 2OG-Fe(II) oxygenase superfamily FK538_12040 PF01070 FMN-dependent dehydrogenase FK538_12045 PF08502 LeuA allosteric (dimerisation) domain FK538_12045 PF00682 HMGL-like FK538_12050 PF00561 alpha/beta hydrolase fold FK538_12055 PF07021 Methionine biosynthesis protein MetW FK538_12055 PF00561 alpha/beta hydrolase fold FK538_12065 PF01725 Ham1 family FK538_12075 PF02416 mttA/Hcf106 family FK538_12080 PF02416 mttA/Hcf106 family FK538_12085 PF00902 Sec-independent protein translocase protein (TatC) FK538_12100 PF01790 Prolipoprotein diacylglyceryl transferase FK538_12115 PF08212 Lipocalin-like domain FK538_12120 PF00303 Thymidylate synthase FK538_12125 PF00186 Dihydrofolate reductase FK538_12140 PF01625 Peptide methionine sulfoxide reductase FK538_12145 PF01557 Fumarylacetoacetate (FAA) hydrolase family FK538_12180 PF00773 RNB domain FK538_12180 PF08206 Ribonuclease B OB domain FK538_12180 PF00575 S1 RNA binding domain FK538_12180 PF08461 Ribonuclease R winged-helix domain FK538_12180 PF17876 Cold shock domain FK538_12185 PF01432 Peptidase family M3 FK538_12190 PF09526 Probable metal-binding protein (DUF2387) FK538_12225 PF03937 Flavinator of succinate dehydrogenase FK538_12230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_12230 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_12230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_12235 PF00743 Flavin-binding monooxygenase-like FK538_12240 PF01196 Ribosomal protein L17 FK538_12245 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FK538_12245 PF01000 RNA polymerase Rpb3/RpoA insert domain FK538_12245 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FK538_12250 PF01479 S4 domain FK538_12250 PF00163 Ribosomal protein S4/S9 N-terminal domain FK538_12255 PF00411 Ribosomal protein S11 FK538_12260 PF00416 Ribosomal protein S13/S18 FK538_12265 PF00444 Ribosomal protein L36 FK538_12270 PF00344 SecY translocase FK538_12275 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FK538_12280 PF00327 Ribosomal protein L30p/L7e FK538_12285 PF00333 Ribosomal protein S5, N-terminal domain FK538_12285 PF03719 Ribosomal protein S5, C-terminal domain FK538_12290 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FK538_12295 PF00347 Ribosomal protein L6 FK538_12300 PF00410 Ribosomal protein S8 FK538_12305 PF00253 Ribosomal protein S14p/S29e FK538_12310 PF00281 Ribosomal protein L5 FK538_12310 PF00673 ribosomal L5P family C-terminus FK538_12315 PF00467 KOW motif FK538_12315 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FK538_12320 PF00238 Ribosomal protein L14p/L23e FK538_12325 PF00366 Ribosomal protein S17 FK538_12330 PF00831 Ribosomal L29 protein FK538_12335 PF00252 Ribosomal protein L16p/L10e FK538_12340 PF00189 Ribosomal protein S3, C-terminal domain FK538_12340 PF07650 KH domain FK538_12345 PF00237 Ribosomal protein L22p/L17e FK538_12350 PF00203 Ribosomal protein S19 FK538_12355 PF03947 Ribosomal Proteins L2, C-terminal domain FK538_12355 PF00181 Ribosomal Proteins L2, RNA binding domain FK538_12360 PF00276 Ribosomal protein L23 FK538_12365 PF00573 Ribosomal protein L4/L1 family FK538_12370 PF00297 Ribosomal protein L3 FK538_12375 PF00338 Ribosomal protein S10p/S20e FK538_12380 PF00117 Glutamine amidotransferase class-I FK538_12385 PF01053 Cys/Met metabolism PLP-dependent enzyme FK538_12390 PF05872 Bacterial protein of unknown function (DUF853) FK538_12395 PF00970 Oxidoreductase FAD-binding domain FK538_12395 PF00042 Globin FK538_12395 PF00175 Oxidoreductase NAD-binding domain FK538_12400 PF02082 Transcriptional regulator FK538_12405 PF01926 50S ribosome-binding GTPase FK538_12420 PF00375 Sodium:dicarboxylate symporter family FK538_12430 PF01553 Acyltransferase FK538_12440 PF00270 DEAD/DEAH box helicase FK538_12440 PF00271 Helicase conserved C-terminal domain FK538_12440 PF17191 RecG wedge domain FK538_12445 PF00156 Phosphoribosyl transferase domain FK538_12455 PF03641 Possible lysine decarboxylase FK538_12460 PF01544 CorA-like Mg2+ transporter protein FK538_12465 PF01609 Transposase DDE domain FK538_12465 PF13006 Insertion element 4 transposase N-terminal FK538_12475 PF05494 MlaC protein FK538_12480 PF02470 MlaD protein FK538_12485 PF02405 Permease MlaE FK538_12490 PF00005 ABC transporter FK538_12495 PF03880 DbpA RNA binding domain FK538_12495 PF00270 DEAD/DEAH box helicase FK538_12495 PF12343 Cold shock protein DEAD box A FK538_12495 PF00271 Helicase conserved C-terminal domain FK538_12500 PF00459 Inositol monophosphatase family FK538_12505 PF02780 Transketolase, C-terminal domain FK538_12505 PF02779 Transketolase, pyrimidine binding domain FK538_12505 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FK538_12510 PF00925 GTP cyclohydrolase II FK538_12515 PF06969 HemN C-terminal domain FK538_12515 PF04055 Radical SAM superfamily FK538_12530 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FK538_12530 PF01488 Shikimate / quinate 5-dehydrogenase FK538_12530 PF08501 Shikimate dehydrogenase substrate binding domain FK538_12535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FK538_12535 PF12806 Acetyl-CoA dehydrogenase C-terminal like FK538_12535 PF02770 Acyl-CoA dehydrogenase, middle domain FK538_12535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FK538_12540 PF06969 HemN C-terminal domain FK538_12540 PF04055 Radical SAM superfamily FK538_12550 PF01554 MatE FK538_12555 PF03109 ABC1 family FK538_12560 PF01197 Ribosomal protein L31 FK538_12565 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FK538_12585 PF01209 ubiE/COQ5 methyltransferase family FK538_12595 PF01385 Probable transposase FK538_12595 PF07282 Putative transposase DNA-binding domain FK538_12595 PF12323 Helix-turn-helix domain FK538_12605 PF13614 AAA domain FK538_12610 PF01594 AI-2E family transporter FK538_12615 PF00080 Copper/zinc superoxide dismutase (SODC) FK538_12620 PF12823 Domain of unknown function (DUF3817) FK538_12625 PF07690 Major Facilitator Superfamily FK538_12635 PF02913 FAD linked oxidases, C-terminal domain FK538_12635 PF01565 FAD binding domain FK538_12640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FK538_12640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FK538_12645 PF00892 EamA-like transporter family FK538_12650 PF00892 EamA-like transporter family FK538_12660 PF01925 Sulfite exporter TauE/SafE FK538_12665 PF09157 Pseudouridine synthase II TruB, C-terminal FK538_12665 PF01509 TruB family pseudouridylate synthase (N terminal domain) FK538_12665 PF16198 tRNA pseudouridylate synthase B C-terminal domain FK538_12670 PF03280 Proteobacterial lipase chaperone protein FK538_12675 PF00561 alpha/beta hydrolase fold FK538_12685 PF00561 alpha/beta hydrolase fold FK538_12700 PF01245 Ribosomal protein L19 FK538_12705 PF01746 tRNA (Guanine-1)-methyltransferase FK538_12710 PF01782 RimM N-terminal domain FK538_12710 PF05239 PRC-barrel domain FK538_12715 PF00886 Ribosomal protein S16 FK538_12750 PF00114 Pilin (bacterial filament) FK538_12750 PF07963 Prokaryotic N-terminal methylation motif FK538_12755 PF02401 LytB protein FK538_12760 PF00625 Guanylate kinase FK538_12765 PF01192 RNA polymerase Rpb6 FK538_12770 PF04607 Region found in RelA / SpoT proteins FK538_12770 PF02824 TGS domain FK538_12770 PF13291 ACT domain FK538_12775 PF01042 Endoribonuclease L-PSP FK538_12780 PF04324 BFD-like [2Fe-2S] binding domain FK538_12785 PF00210 Ferritin-like domain FK538_12790 PF15864 Protein glycosylation ligase FK538_12790 PF11846 Virulence factor membrane-bound polymerase, C-terminal FK538_12790 PF04932 O-Antigen ligase FK538_12800 PF00114 Pilin (bacterial filament) FK538_12800 PF07963 Prokaryotic N-terminal methylation motif FK538_12810 PF04536 TPM domain FK538_12815 PF04011 LemA family FK538_12825 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FK538_12825 PF07992 Pyridine nucleotide-disulphide oxidoreductase FK538_12830 PF01493 GXGXG motif FK538_12830 PF00310 Glutamine amidotransferases class-II FK538_12830 PF04898 Glutamate synthase central domain FK538_12830 PF01645 Conserved region in glutamate synthase FK538_12840 PF01761 3-dehydroquinate synthase FK538_12845 PF01202 Shikimate kinase FK538_12850 PF11741 AMIN domain FK538_12850 PF00263 Bacterial type II and III secretion system protein FK538_12850 PF03958 Bacterial type II/III secretion system short domain FK538_12850 PF07660 Secretin and TonB N terminus short domain FK538_12875 PF17092 Penicillin-binding protein OB-like domain FK538_12875 PF00912 Transglycosylase FK538_12875 PF00905 Penicillin binding protein transpeptidase domain FK538_12880 PF13847 Methyltransferase domain FK538_12885 PF00953 Glycosyl transferase family 4 FK538_12890 PF01225 Mur ligase family, catalytic domain FK538_12890 PF02875 Mur ligase family, glutamate ligase domain FK538_12890 PF08245 Mur ligase middle domain FK538_12895 PF01225 Mur ligase family, catalytic domain FK538_12895 PF02875 Mur ligase family, glutamate ligase domain FK538_12895 PF08245 Mur ligase middle domain FK538_12900 PF00905 Penicillin binding protein transpeptidase domain FK538_12900 PF03717 Penicillin-binding Protein dimerisation domain FK538_12910 PF01795 MraW methylase family FK538_12930 PF00749 tRNA synthetases class I (E and Q), catalytic domain FK538_12950 PF12848 ABC transporter FK538_12950 PF00005 ABC transporter FK538_12955 PF01053 Cys/Met metabolism PLP-dependent enzyme FK538_12960 PF00106 short chain dehydrogenase FK538_12970 PF09371 Tex-like protein N-terminal domain FK538_12970 PF17674 HHH domain FK538_12970 PF00575 S1 RNA binding domain FK538_12970 PF16921 Tex protein YqgF-like domain FK538_12975 PF00486 Transcriptional regulatory protein, C terminal FK538_12975 PF00072 Response regulator receiver domain FK538_12980 PF00512 His Kinase A (phospho-acceptor) domain FK538_12980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_12980 PF00672 HAMP domain FK538_12985 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FK538_12985 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FK538_13010 PF00475 Imidazoleglycerol-phosphate dehydratase FK538_13015 PF00117 Glutamine amidotransferase class-I FK538_13030 PF00977 Histidine biosynthesis protein FK538_13050 PF01636 Phosphotransferase enzyme family FK538_13055 PF00977 Histidine biosynthesis protein FK538_13065 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FK538_13065 PF12833 Helix-turn-helix domain FK538_13070 PF00230 Major intrinsic protein FK538_13090 PF02705 K+ potassium transporter FK538_13115 PF01593 Flavin containing amine oxidoreductase FK538_13120 PF02678 Pirin FK538_13120 PF05726 Pirin C-terminal cupin domain FK538_13125 PF00578 AhpC/TSA family FK538_13125 PF10417 C-terminal domain of 1-Cys peroxiredoxin FK538_13130 PF00436 Single-strand binding protein family FK538_13135 PF07690 Major Facilitator Superfamily FK538_13145 PF02581 Thiamine monophosphate synthase FK538_13145 PF08543 Phosphomethylpyrimidine kinase FK538_13145 PF03070 TENA/THI-4/PQQC family FK538_13150 PF00005 ABC transporter FK538_13150 PF17755 UvrA DNA-binding domain FK538_13150 PF17760 UvrA interaction domain FK538_13155 PF00990 Diguanylate cyclase, GGDEF domain FK538_13155 PF08448 PAS fold FK538_13165 PF02028 BCCT, betaine/carnitine/choline family transporter FK538_13185 PF00474 Sodium:solute symporter family FK538_13190 PF04341 Protein of unknown function, DUF485 FK538_13195 PF00512 His Kinase A (phospho-acceptor) domain FK538_13195 PF00072 Response regulator receiver domain FK538_13195 PF09308 LuxQ, periplasmic FK538_13195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_13205 PF00072 Response regulator receiver domain FK538_13205 PF00196 Bacterial regulatory proteins, luxR family FK538_13210 PF03358 NADPH-dependent FMN reductase FK538_13225 PF13193 AMP-binding enzyme C-terminal domain FK538_13225 PF16177 Acetyl-coenzyme A synthetase N-terminus FK538_13225 PF00501 AMP-binding enzyme FK538_13230 PF00924 Mechanosensitive ion channel FK538_13235 PF04452 RNA methyltransferase FK538_13240 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FK538_13245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FK538_13270 PF01368 DHH family FK538_13270 PF17768 RecJ OB domain FK538_13270 PF02272 DHHA1 domain FK538_13275 PF01243 Pyridoxamine 5'-phosphate oxidase FK538_13275 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FK538_13280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FK538_13280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FK538_13280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FK538_13280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FK538_13285 PF00478 IMP dehydrogenase / GMP reductase domain FK538_13285 PF00571 CBS domain FK538_13290 PF03692 Putative zinc- or iron-chelating domain FK538_13295 PF00258 Flavodoxin FK538_13295 PF01613 Flavin reductase like domain FK538_13300 PF01169 Uncharacterized protein family UPF0016 FK538_13305 PF02817 e3 binding domain FK538_13305 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FK538_13305 PF00364 Biotin-requiring enzyme FK538_13310 PF00456 Transketolase, thiamine diphosphate binding domain FK538_13310 PF17831 Pyruvate dehydrogenase E1 component middle domain FK538_13325 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FK538_13330 PF12327 FtsZ family, C-terminal domain FK538_13330 PF00091 Tubulin/FtsZ family, GTPase domain FK538_13335 PF02491 SHS2 domain inserted in FTSA FK538_13340 PF08478 POTRA domain, FtsQ-type FK538_13340 PF03799 Cell division protein FtsQ FK538_13345 PF01820 D-ala D-ala ligase N-terminus FK538_13345 PF07478 D-ala D-ala ligase C-terminus FK538_13350 PF01225 Mur ligase family, catalytic domain FK538_13350 PF02875 Mur ligase family, glutamate ligase domain FK538_13350 PF08245 Mur ligase middle domain FK538_13355 PF04101 Glycosyltransferase family 28 C-terminal domain FK538_13355 PF03033 Glycosyltransferase family 28 N-terminal domain FK538_13360 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FK538_13360 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FK538_13375 PF00156 Phosphoribosyl transferase domain FK538_13380 PF03372 Endonuclease/Exonuclease/phosphatase family FK538_13385 PF03960 ArsC family FK538_13395 PF07859 alpha/beta hydrolase fold FK538_13400 PF02525 Flavodoxin-like fold FK538_13405 PF00990 Diguanylate cyclase, GGDEF domain FK538_13410 PF00043 Glutathione S-transferase, C-terminal domain FK538_13410 PF02798 Glutathione S-transferase, N-terminal domain FK538_13440 PF00576 HIUase/Transthyretin family FK538_13450 PF00583 Acetyltransferase (GNAT) family FK538_13455 PF01494 FAD binding domain FK538_13460 PF03561 Allantoicase repeat FK538_13465 PF04115 Ureidoglycolate lyase FK538_13475 PF00939 Sodium:sulfate symporter transmembrane region FK538_13485 PF00005 ABC transporter FK538_13490 PF00005 ABC transporter FK538_13490 PF12399 Branched-chain amino acid ATP-binding cassette transporter FK538_13500 PF02653 Branched-chain amino acid transport system / permease component FK538_13510 PF01751 Toprim domain FK538_13510 PF00986 DNA gyrase B subunit, carboxyl terminus FK538_13510 PF00204 DNA gyrase B FK538_13510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_13515 PF05728 Uncharacterised protein family (UPF0227) FK538_13525 PF02600 Disulfide bond formation protein DsbB FK538_13530 PF04262 Glutamate-cysteine ligase FK538_13545 PF04286 Protein of unknown function (DUF445) FK538_13550 PF00155 Aminotransferase class I and II FK538_13555 PF01554 MatE FK538_13560 PF00106 short chain dehydrogenase FK538_13570 PF00072 Response regulator receiver domain FK538_13570 PF00486 Transcriptional regulatory protein, C terminal FK538_13575 PF00989 PAS fold FK538_13575 PF11808 Phosphate regulon sensor protein PhoR FK538_13575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FK538_13575 PF00512 His Kinase A (phospho-acceptor) domain FK538_13580 PF02666 Phosphatidylserine decarboxylase FK538_13585 PF00581 Rhodanese-like domain FK538_13590 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FK538_13590 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FK538_13600 PF00199 Catalase FK538_13600 PF06628 Catalase-related immune-responsive FK538_13605 PF02580 D-Tyr-tRNA(Tyr) deacylase FK538_13630 PF02503 Polyphosphate kinase middle domain FK538_13630 PF13090 Polyphosphate kinase C-terminal domain 2 FK538_13630 PF17941 Polyphosphate kinase C-terminal domain 1 FK538_13630 PF13089 Polyphosphate kinase N-terminal domain FK538_13635 PF01758 Sodium Bile acid symporter family FK538_13640 PF00857 Isochorismatase family FK538_13645 PF07690 Major Facilitator Superfamily FK538_13650 PF00701 Dihydrodipicolinate synthetase family FK538_13660 PF01259 SAICAR synthetase FK538_13665 PF00004 ATPase family associated with various cellular activities (AAA) FK538_13665 PF16193 AAA C-terminal domain FK538_13665 PF12002 MgsA AAA+ ATPase C terminal FK538_13670 PF03692 Putative zinc- or iron-chelating domain FK538_13675 PF07043 Protein of unknown function (DUF1328) FK538_13690 PF10576 Iron-sulfur binding domain of endonuclease III FK538_13690 PF00633 Helix-hairpin-helix motif FK538_13690 PF14815 NUDIX domain FK538_13690 PF00730 HhH-GPD superfamily base excision DNA repair protein FK538_13695 PF01551 Peptidase family M23 FK538_13705 PF03352 Methyladenine glycosylase FK538_13710 PF00107 Zinc-binding dehydrogenase FK538_13710 PF08240 Alcohol dehydrogenase GroES-like domain FK538_13715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK538_13715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FK538_13720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FK538_13720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK538_13725 PF03023 Lipid II flippase MurJ FK538_13730 PF01510 N-acetylmuramoyl-L-alanine amidase FK538_13735 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FK538_13735 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FK538_13740 PF03725 3' exoribonuclease family, domain 2 FK538_13740 PF01138 3' exoribonuclease family, domain 1 FK538_13745 PF00440 Bacterial regulatory proteins, tetR family FK538_13750 PF01323 DSBA-like thioredoxin domain FK538_13760 PF13419 Haloacid dehalogenase-like hydrolase FK538_13765 PF00106 short chain dehydrogenase FK538_13785 PF00696 Amino acid kinase family FK538_13785 PF00583 Acetyltransferase (GNAT) family FK538_13790 PF09084 NMT1/THI5 like FK538_13795 PF09084 NMT1/THI5 like FK538_13800 PF00296 Luciferase-like monooxygenase FK538_13805 PF00528 Binding-protein-dependent transport system inner membrane component FK538_13810 PF00005 ABC transporter FK538_13815 PF13411 MerR HTH family regulatory protein FK538_13815 PF00145 C-5 cytosine-specific DNA methylase FK538_13820 PF07282 Putative transposase DNA-binding domain FK538_13820 PF12323 Helix-turn-helix domain FK538_13820 PF01385 Probable transposase FK538_13825 PF08362 YcdC-like protein, C-terminal region FK538_13825 PF00440 Bacterial regulatory proteins, tetR family FK538_13835 PF01687 Riboflavin kinase FK538_13835 PF06574 FAD synthetase FK538_13840 PF00133 tRNA synthetases class I (I, L, M and V) FK538_13840 PF06827 Zinc finger found in FPG and IleRS FK538_13840 PF08264 Anticodon-binding domain of tRNA FK538_13845 PF01252 Signal peptidase (SPase) II FK538_13850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FK538_13860 PF07995 Glucose / Sorbosone dehydrogenase FK538_13865 PF07690 Major Facilitator Superfamily FK538_13895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FK538_13905 PF07859 alpha/beta hydrolase fold FK538_13920 PF01025 GrpE FK538_13925 PF00012 Hsp70 protein FK538_13940 PF13406 Transglycosylase SLT domain FK538_13945 PF02222 ATP-grasp domain FK538_13945 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FK538_13950 PF00731 AIR carboxylase FK538_13965 PF08245 Mur ligase middle domain FK538_13965 PF02875 Mur ligase family, glutamate ligase domain FK538_13965 PF01225 Mur ligase family, catalytic domain FK538_13970 PF01797 Transposase IS200 like FK538_13985 PF14542 GCN5-related N-acetyl-transferase FK538_13995 PF03741 Integral membrane protein TerC family FK538_14000 PF13006 Insertion element 4 transposase N-terminal FK538_14000 PF01609 Transposase DDE domain FK538_14005 PF01979 Amidohydrolase family FK538_14010 PF00156 Phosphoribosyl transferase domain FK538_14020 PF13098 Thioredoxin-like domain FK538_14020 PF10411 Disulfide bond isomerase protein N-terminus FK538_14025 PF16916 Dimerisation domain of Zinc Transporter FK538_14025 PF01545 Cation efflux family FK538_14030 PF02583 Metal-sensitive transcriptional repressor FK538_14045 PF12631 MnmE helical domain FK538_14045 PF10396 GTP-binding protein TrmE N-terminus FK538_14045 PF01926 50S ribosome-binding GTPase FK538_14050 PF14849 YidC periplasmic domain FK538_14050 PF02096 60Kd inner membrane protein FK538_14055 PF01809 Putative membrane protein insertion efficiency factor FK538_14060 PF00825 Ribonuclease P FK538_14065 PF00468 Ribosomal protein L34 FK538_14080 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FK538_14115 PF13635 Domain of unknown function (DUF4143) FK538_14115 PF13173 AAA domain FK538_14150 PF00873 AcrB/AcrD/AcrF family FK538_14155 PF01545 Cation efflux family FK538_14160 PF02796 Helix-turn-helix domain of resolvase FK538_14160 PF00239 Resolvase, N terminal domain FK538_14170 PF07732 Multicopper oxidase FK538_14170 PF07731 Multicopper oxidase FK538_14170 PF00394 Multicopper oxidase FK538_14185 PF05973 Phage derived protein Gp49-like (DUF891) FK538_14200 PF13411 MerR HTH family regulatory protein FK538_14205 PF01545 Cation efflux family FK538_14210 PF13610 DDE domain FK538_14215 PF01699 Sodium/calcium exchanger protein FK538_14225 PF03350 Uncharacterized protein family, UPF0114 FK538_14235 PF00916 Sulfate permease family FK538_14235 PF01740 STAS domain FK538_14250 PF02384 N-6 DNA Methylase FK538_14250 PF12161 HsdM N-terminal domain FK538_14255 PF01420 Type I restriction modification DNA specificity domain FK538_14275 PF12008 Type I restriction and modification enzyme - subunit R C terminal FK538_14275 PF18766 SWI2/SNF2 ATPase FK538_14275 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FK538_14290 PF03432 Relaxase/Mobilisation nuclease domain FK538_14305 PF13438 Domain of unknown function (DUF4113) FK538_14305 PF11799 impB/mucB/samB family C-terminal domain FK538_14305 PF00817 impB/mucB/samB family FK538_14310 PF00717 Peptidase S24-like FK538_14365 PF13610 DDE domain FK538_14380 PF13495 Phage integrase, N-terminal SAM-like domain FK538_14380 PF00589 Phage integrase family FK538_14385 PF01494 FAD binding domain FK538_14390 PF02796 Helix-turn-helix domain of resolvase FK538_14390 PF00239 Resolvase, N terminal domain FK538_14410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FK538_14410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FK538_14410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FK538_14410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FK538_14415 PF00809 Pterin binding enzyme FK538_14430 PF02332 Methane/Phenol/Toluene Hydroxylase FK538_14450 PF01636 Phosphotransferase enzyme family FK538_14465 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase FK538_14485 PF13610 DDE domain FK538_14495 PF02522 Aminoglycoside 3-N-acetyltransferase FK538_14505 PF00905 Penicillin binding protein transpeptidase domain FK538_14515 PF00916 Sulfate permease family FK538_14515 PF01740 STAS domain FK538_14520 PF00582 Universal stress protein family FK538_14525 PF00239 Resolvase, N terminal domain FK538_14525 PF02796 Helix-turn-helix domain of resolvase FK538_14535 PF02195 ParB-like nuclease domain FK538_14535 PF17762 HTH domain found in ParB protein FK538_14540 PF13614 AAA domain FK538_14575 PF03389 MobA/MobL family FK538_14590 PF01051 Initiator Replication protein