locus-tag	class	description
J0W33_00005	COG1192	Involved in chromosome partitioning
J0W33_00010	COG1475	DNA binding
J0W33_00015	COG0811	peptide transport
J0W33_00025	COG1132	(ABC) transporter
J0W33_00030	COG1663	tetraacyldisaccharide 4'-kinase activity
J0W33_00050	COG0084	hydrolase, TatD family'
J0W33_00085	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J0W33_00115	COG0776	regulation of translation
J0W33_00125	COG0284	orotidine-5'-phosphate decarboxylase activity
J0W33_00130	COG2431	L-lysine efflux transmembrane transporter activity
J0W33_00145	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
J0W33_00170	COG1253	flavin adenine dinucleotide binding
J0W33_00200	COG0583	DNA-binding transcription factor activity
J0W33_00215	COG3852	Histidine kinase
J0W33_00230	COG0233	cytoplasmic translational termination
J0W33_00235	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J0W33_00240	COG0575	Belongs to the CDS family
J0W33_00255	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J0W33_00275	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J0W33_00305	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J0W33_00310	COG0730	response to heat
J0W33_00315	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J0W33_00320	COG2207	Transcriptional regulator
J0W33_00325	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J0W33_00335	COG1960	acyl-CoA dehydrogenase activity
J0W33_00340	COG1960	acyl-CoA dehydrogenase activity
J0W33_00375	COG4890	Cyd operon protein YbgT
J0W33_00380	COG1294	oxidase, subunit
J0W33_00395	COG1585	Membrane protein implicated in regulation of membrane protease activity
J0W33_00405	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J0W33_00425	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J0W33_00430	COG0569	domain protein
J0W33_00440	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J0W33_00460	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
J0W33_00465	COG0542	response to heat
J0W33_00500	COG0372	Belongs to the citrate synthase family
J0W33_00510	COG1546	Belongs to the CinA family
J0W33_00510	COG1058	Belongs to the CinA family
J0W33_00560	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J0W33_00580	COG2814	Major facilitator Superfamily
J0W33_00595	COG0439	Biotin carboxylase
J0W33_00600	COG0511	ligase activity, forming carbon-carbon bonds
J0W33_00635	COG0596	Alpha beta hydrolase
J0W33_00730	COG4628	conserved protein (DUF2132)
J0W33_00735	COG1063	alcohol dehydrogenase
J0W33_00745	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J0W33_00750	COG0508	dehydrogenase complex catalyzes the overall conversion of
J0W33_00755	COG0022	dehydrogenase e1 component
J0W33_00760	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J0W33_00765	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J0W33_00775	COG3293	Transposase
J0W33_00780	COG0730	response to heat
J0W33_00785	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J0W33_00790	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
J0W33_00800	COG2885	chlorophyll binding
J0W33_00815	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J0W33_00845	COG1012	belongs to the aldehyde dehydrogenase family
J0W33_00850	COG1309	transcriptional regulator
J0W33_00855	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J0W33_00885	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J0W33_00915	COG0318	PFAM AMP-dependent synthetase and ligase
J0W33_00925	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
J0W33_00930	COG1028	Short-chain dehydrogenase reductase Sdr
J0W33_00935	COG1846	Transcriptional regulator
J0W33_00955	COG0318	PFAM AMP-dependent synthetase and ligase
J0W33_00960	COG3293	Transposase
J0W33_00965	COG2814	Major facilitator Superfamily
J0W33_00975	COG0596	Alpha beta hydrolase
J0W33_00975	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J0W33_00975	COG2226	methyltransferase
J0W33_00980	COG1960	acyl-CoA dehydrogenase activity
J0W33_00990	COG1024	Enoyl-CoA hydratase
J0W33_00995	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J0W33_01000	COG0235	Class ii aldolase
J0W33_01010	COG0183	Belongs to the thiolase family
J0W33_01015	COG1250	3-hydroxyacyl-CoA dehydrogenase
J0W33_01020	COG1024	Enoyl-CoA hydratase
J0W33_01025	COG2814	Major facilitator Superfamily
J0W33_01035	COG2814	Major facilitator Superfamily
J0W33_01040	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J0W33_01045	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
J0W33_01050	COG2814	Major facilitator Superfamily
J0W33_01055	COG1960	acyl-CoA dehydrogenase activity
J0W33_01060	COG1960	acyl-CoA dehydrogenase activity
J0W33_01070	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
J0W33_01070	COG0644	oxidoreductase
J0W33_01075	COG0515	serine threonine protein kinase
J0W33_01080	COG2116	formate transmembrane transporter activity
J0W33_01085	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
J0W33_01105	COG2223	nitrite transmembrane transporter activity
J0W33_01115	COG1028	Short-chain dehydrogenase reductase Sdr
J0W33_01145	COG2814	Major facilitator Superfamily
J0W33_01150	COG0583	DNA-binding transcription factor activity
J0W33_01155	COG4948	Mandelate Racemase Muconate Lactonizing
J0W33_01160	COG4829	muconolactone delta-isomerase
J0W33_01170	COG4638	Rieske (2fe-2S)
J0W33_01175	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
J0W33_01180	COG0633	Ferredoxin
J0W33_01180	COG0543	2 iron, 2 sulfur cluster binding
J0W33_01185	COG1028	Short-chain dehydrogenase reductase Sdr
J0W33_01190	COG3135	benzoate transporter
J0W33_01195	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
J0W33_01200	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J0W33_01205	COG0183	Belongs to the thiolase family
J0W33_01210	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J0W33_01230	COG0583	DNA-binding transcription factor activity
J0W33_01235	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
J0W33_01240	COG4149	molybdate abc transporter
J0W33_01250	COG0303	'Molybdopterin
J0W33_01255	COG0521	Mo-molybdopterin cofactor biosynthetic process
J0W33_01255	COG0315	cyclic pyranopterin monophosphate synthase activity
J0W33_01270	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J0W33_01280	COG0243	molybdopterin cofactor binding
J0W33_01285	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J0W33_01290	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J0W33_01295	COG2223	nitrite transmembrane transporter activity
J0W33_01305	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J0W33_01305	COG1116	anion transmembrane transporter activity
J0W33_01310	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J0W33_01315	COG2937	Belongs to the GPAT DAPAT family
J0W33_01320	COG0640	Transcriptional regulator
J0W33_01340	COG3122	Protein conserved in bacteria
J0W33_01345	COG0668	transmembrane transport
J0W33_01360	COG1132	(ABC) transporter
J0W33_01380	COG2814	Major facilitator Superfamily
J0W33_01390	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J0W33_01400	COG1113	amino acid transport
J0W33_01415	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
J0W33_01420	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J0W33_01470	COG1525	nuclease
J0W33_01480	COG1294	oxidase, subunit
J0W33_01485	COG1271	oxidase subunit
J0W33_01495	COG2814	Major facilitator Superfamily
J0W33_01500	COG2207	Transcriptional regulator
J0W33_01505	COG1960	acyl-CoA dehydrogenase activity
J0W33_01515	COG1629	transport
J0W33_01530	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J0W33_01535	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
J0W33_01555	COG0583	DNA-binding transcription factor activity
J0W33_01565	COG1346	cytolysis
J0W33_01575	COG1283	sodium-dependent phosphate transmembrane transporter activity
J0W33_01585	COG0693	protein deglycase activity
J0W33_01630	COG0552	protein localization to endoplasmic reticulum
J0W33_01635	COG0612	Peptidase, M16
J0W33_01665	COG0517	IMP dehydrogenase activity
J0W33_01665	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J0W33_01665	COG0617	tRNA 3'-terminal CCA addition
J0W33_01670	COG0133	tryptophan synthase activity
J0W33_01680	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J0W33_01700	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J0W33_01755	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J0W33_01785	COG0822	iron-sulfur transferase activity
J0W33_01790	COG0316	Belongs to the HesB IscA family
J0W33_01820	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J0W33_01835	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J0W33_01840	COG0702	epimerase
J0W33_01845	COG0268	Binds directly to 16S ribosomal RNA
J0W33_01865	COG1011	Hydrolase
J0W33_01870	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J0W33_01880	COG2137	regulation of response to DNA damage stimulus
J0W33_01895	COG0772	Belongs to the SEDS family
J0W33_01910	COG0148	phosphopyruvate hydratase activity
J0W33_01940	COG0446	pyridine nucleotide-disulphide oxidoreductase
J0W33_01940	COG1902	pentaerythritol trinitrate reductase activity
J0W33_01965	COG3293	Transposase
J0W33_01970	COG1960	acyl-CoA dehydrogenase activity
J0W33_01975	COG0583	DNA-binding transcription factor activity
J0W33_01980	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J0W33_02000	COG0506	proline dehydrogenase activity
J0W33_02000	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
J0W33_02000	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
J0W33_02020	COG3698	Phosphodiester glycosidase
J0W33_02060	COG0697	spore germination
J0W33_02085	COG0424	maF-like protein
J0W33_02090	COG2850	peptidyl-arginine hydroxylation
J0W33_02095	COG4585	Histidine kinase
J0W33_02105	COG0069	glutamate synthase activity
J0W33_02125	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J0W33_02130	COG1454	alcohol dehydrogenase
J0W33_02135	COG0824	Thioesterase
J0W33_02150	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J0W33_02155	COG2030	dehydratase
J0W33_02165	COG0183	Belongs to the thiolase family
J0W33_02180	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J0W33_02190	COG3135	benzoate transporter
J0W33_02200	COG0589	response to stress
J0W33_02205	COG0589	response to stress
J0W33_02215	COG0308	aminopeptidase N
J0W33_02245	COG0786	glutamate:sodium symporter activity
J0W33_02285	COG0477	Major facilitator Superfamily
J0W33_02300	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J0W33_02310	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J0W33_02325	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J0W33_02330	COG1960	acyl-CoA dehydrogenase activity
J0W33_02350	COG3781	membrane
J0W33_02355	COG2890	protein-(glutamine-N5) methyltransferase activity
J0W33_02360	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J0W33_02375	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J0W33_02400	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J0W33_02405	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J0W33_02410	COG1845	cytochrome c oxidase, subunit III
J0W33_02415	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J0W33_02425	COG0360	Binds together with S18 to 16S ribosomal RNA
J0W33_02430	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J0W33_02445	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J0W33_02460	COG1305	Transglutaminase-like
J0W33_02470	COG2308	Evidence 4 Homologs of previously reported genes of
J0W33_02510	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
J0W33_02515	COG0138	bifunctional purine biosynthesis protein purh
J0W33_02535	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J0W33_02540	COG2011	ABC-type metal ion transport system permease component
J0W33_02570	COG1454	alcohol dehydrogenase
J0W33_02585	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
J0W33_02595	COG4122	O-methyltransferase activity
J0W33_02620	COG2274	protein secretion by the type I secretion system
J0W33_02630	COG1137	ATPase activity
J0W33_02635	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
J0W33_02645	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
J0W33_02650	COG0517	IMP dehydrogenase activity
J0W33_02650	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
J0W33_02675	COG1643	Atp-dependent helicase
J0W33_02705	COG3634	alkyl hydroperoxide reductase activity
J0W33_02720	COG2391	methyltransferase activity
J0W33_02745	COG2070	2-Nitropropane dioxygenase
J0W33_02760	COG1278	Cold shock
J0W33_02800	COG1309	transcriptional regulator
J0W33_02805	COG0596	Alpha beta hydrolase
J0W33_02845	COG0352	thiamine-phosphate diphosphorylase activity
J0W33_02880	COG0612	Peptidase, M16
J0W33_02890	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J0W33_02900	COG0739	heme binding
J0W33_02915	COG1187	pseudouridine synthase activity
J0W33_02930	COG1686	Belongs to the peptidase S11 family
J0W33_02935	COG1252	NADH dehydrogenase
J0W33_02940	COG1047	Peptidyl-prolyl cis-trans
J0W33_02965	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
J0W33_02970	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J0W33_02980	COG0693	protein deglycase activity
J0W33_02985	COG1960	acyl-CoA dehydrogenase activity
J0W33_02990	COG1301	dicarboxylic acid transport
J0W33_03000	COG3139	Protein of unknown function (DUF1315)
J0W33_03005	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J0W33_03010	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J0W33_03045	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J0W33_03055	COG1720	tRNA m6t6A37 methyltransferase activity
J0W33_03080	COG0789	Transcriptional regulator
J0W33_03085	COG0431	NADPH-dependent FMN reductase
J0W33_03090	COG0798	PFAM Bile acid sodium symporter
J0W33_03100	COG0640	Transcriptional regulator
J0W33_03110	COG0826	peptidase U32
J0W33_03115	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J0W33_03120	COG3634	alkyl hydroperoxide reductase activity
J0W33_03140	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J0W33_03195	COG1131	(ABC) transporter
J0W33_03200	COG0842	Transport permease protein
J0W33_03215	COG2951	lytic endotransglycosylase activity
J0W33_03240	COG0052	Belongs to the universal ribosomal protein uS2 family
J0W33_03260	COG2175	clavaminate synthase activity
J0W33_03270	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J0W33_03300	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
J0W33_03305	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J0W33_03310	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J0W33_03330	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
J0W33_03370	COG1902	pentaerythritol trinitrate reductase activity
J0W33_03370	COG0446	pyridine nucleotide-disulphide oxidoreductase
J0W33_03385	COG2203	Gaf domain
J0W33_03385	COG3706	GGDEF domain
J0W33_03385	COG5001	Diguanylate cyclase
J0W33_03385	COG4251	negative regulation of phosphorylation
J0W33_03390	COG0418	dihydroorotase activity
J0W33_03395	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J0W33_03420	COG0833	amino acid
J0W33_03455	COG4172	Belongs to the ABC transporter superfamily
J0W33_03460	COG4239	(ABC) transporter, permease
J0W33_03465	COG4174	ABC transporter (Permease)
J0W33_03470	COG4166	transmembrane transport
J0W33_03475	COG0741	lytic transglycosylase activity
J0W33_03475	COG1388	LysM domain
J0W33_03490	COG2816	NAD+ diphosphatase activity
J0W33_03525	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J0W33_03530	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J0W33_03535	COG0006	proline dipeptidase activity
J0W33_03540	COG3079	Belongs to the UPF0149 family
J0W33_03570	COG0277	FAD linked oxidase domain protein
J0W33_03580	COG2186	Transcriptional regulator
J0W33_03600	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J0W33_03610	COG2234	aminopeptidase activity
J0W33_03620	COG3384	dioxygenase
J0W33_03630	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J0W33_03635	COG2878	Part of a membrane complex involved in electron transport
J0W33_03640	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J0W33_03665	COG0768	penicillin binding
J0W33_03670	COG0742	ribosomal rna small subunit methyltransferase
J0W33_03685	COG0830	nickel cation binding
J0W33_03700	COG0804	urea catabolic process
J0W33_03735	COG3015	lipoprotein NlpE involved in copper resistance
J0W33_03755	COG1253	flavin adenine dinucleotide binding
J0W33_03780	COG3118	belongs to the thioredoxin family
J0W33_03815	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J0W33_03820	COG1773	rubredoxin
J0W33_03825	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J0W33_03835	COG0583	DNA-binding transcription factor activity
J0W33_03845	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J0W33_03855	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
J0W33_03860	COG4181	ATPase activity
J0W33_03885	COG4771	TonB-dependent receptor
J0W33_03910	COG0306	phosphate transporter
J0W33_03920	COG2066	Belongs to the glutaminase family
J0W33_03930	COG0477	Major facilitator Superfamily
J0W33_03960	COG2199	diguanylate cyclase activity
J0W33_03960	COG2203	Gaf domain
J0W33_03970	COG4681	YaeQ
J0W33_03975	COG0523	cobalamin synthesis protein
J0W33_03995	COG0583	DNA-binding transcription factor activity
J0W33_04000	COG2814	Major facilitator Superfamily
J0W33_04010	COG1607	acyl-coa hydrolase
J0W33_04020	COG1752	Esterase of the alpha-beta hydrolase superfamily
J0W33_04025	COG2059	Chromate
J0W33_04030	COG1115	amino acid carrier protein
J0W33_04035	COG0786	glutamate:sodium symporter activity
J0W33_04050	COG2814	Major facilitator Superfamily
J0W33_04055	COG1289	transmembrane transporter activity
J0W33_04065	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J0W33_04120	COG1376	ErfK ybiS ycfS ynhG family protein
J0W33_04125	COG2832	Protein of unknown function (DUF454)
J0W33_04135	COG5510	response to toxic substance
J0W33_04150	COG0643	Histidine kinase
J0W33_04150	COG0784	Response regulator, receiver
J0W33_04150	COG2198	Histidine kinase
J0W33_04155	COG0840	transmembrane signaling receptor activity
J0W33_04190	COG0442	prolyl-tRNA aminoacylation
J0W33_04225	COG2358	TRAP transporter, solute receptor (TAXI family
J0W33_04240	COG0489	protein tyrosine kinase activity
J0W33_04245	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J0W33_04245	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J0W33_04270	COG0004	ammonium transporteR
J0W33_04285	COG2515	1-aminocyclopropane-1-carboxylate deaminase
J0W33_04305	COG2081	HI0933 family
J0W33_04320	COG0668	transmembrane transport
J0W33_04345	COG0583	DNA-binding transcription factor activity
J0W33_04350	COG1278	Cold shock
J0W33_04355	COG1278	Cold shock
J0W33_04370	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J0W33_04375	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J0W33_04380	COG0713	ATP synthesis coupled electron transport
J0W33_04385	COG0839	Belongs to the complex I subunit 6 family
J0W33_04390	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J0W33_04395	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
J0W33_04405	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
J0W33_04425	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J0W33_04435	COG0142	geranyltranstransferase activity
J0W33_04440	COG2828	Protein conserved in bacteria
J0W33_04445	COG1113	amino acid transport
J0W33_04465	COG0625	glutathione transferase activity
J0W33_04510	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J0W33_04520	COG1530	ribonuclease E activity
J0W33_04525	COG0424	maF-like protein
J0W33_04530	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
J0W33_04535	COG1792	Involved in formation and maintenance of cell shape
J0W33_04540	COG1077	Cell shape determining protein MreB Mrl
J0W33_04545	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J0W33_04550	COG0154	amidase activity
J0W33_04555	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J0W33_04600	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
J0W33_04615	COG1215	transferase activity, transferring glycosyl groups
J0W33_04620	COG1649	PFAM Uncharacterised BCR, COG1649
J0W33_04620	COG0726	polysaccharide deacetylase
J0W33_04635	COG3328	transposase activity
J0W33_04695	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J0W33_04700	COG2050	protein possibly involved in aromatic compounds catabolism
J0W33_04720	COG0420	3'-5' exonuclease activity
J0W33_04750	COG0735	belongs to the Fur family
J0W33_04755	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J0W33_04760	COG2914	Belongs to the UPF0125 (RnfH) family
J0W33_04775	COG0121	glutamine amidotransferase
J0W33_04790	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J0W33_04800	COG0210	DNA helicase
J0W33_04805	COG2885	chlorophyll binding
J0W33_04810	COG0204	Acyl-transferase
J0W33_04820	COG0850	regulation of cytokinetic process
J0W33_04840	COG1674	ftsk spoiiie
J0W33_04840	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J0W33_04845	COG0492	ferredoxin-NADP+ reductase activity
J0W33_04850	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
J0W33_04860	COG0456	acetyltransferase
J0W33_04885	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
J0W33_04900	COG1981	membrane
J0W33_04905	COG1113	amino acid transport
J0W33_04910	COG0251	oxidation-reduction process
J0W33_04935	COG0351	phosphomethylpyrimidine kinase
J0W33_04935	COG0352	thiamine-phosphate diphosphorylase activity
J0W33_04935	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J0W33_04950	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J0W33_04955	COG2076	Multidrug Resistance protein
J0W33_04965	COG2132	Multicopper oxidase
J0W33_04975	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J0W33_04990	COG4269	membrane
J0W33_05010	COG1968	undecaprenyl-diphosphatase activity
J0W33_05015	COG1214	PFAM Peptidase M22, glycoprotease
J0W33_05025	COG0494	nUDIX hydrolase
J0W33_05075	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J0W33_05080	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
J0W33_05170	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
J0W33_05175	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
J0W33_05190	COG0450	alkyl hydroperoxide reductase
J0W33_05205	COG0285	dihydrofolate synthase activity
J0W33_05210	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J0W33_05255	COG4206	TonB-dependent receptor
J0W33_05260	COG2096	Adenosyltransferase
J0W33_05280	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
J0W33_05285	COG2315	Protein conserved in bacteria
J0W33_05295	COG0745	RESPONSE REGULATOR receiver
J0W33_05300	COG2205	protein histidine kinase activity
J0W33_05310	COG1960	acyl-CoA dehydrogenase activity
J0W33_05315	COG1960	acyl-CoA dehydrogenase activity
J0W33_05320	COG3223	Belongs to the PsiE family
J0W33_05355	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J0W33_05375	COG1216	Glycosyl transferase, family 2
J0W33_05375	COG1442	glycosyl transferase family 8
J0W33_05380	COG0438	transferase activity, transferring glycosyl groups
J0W33_05410	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J0W33_05415	COG5002	protein histidine kinase activity
J0W33_05435	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
J0W33_05445	COG1704	LemA family
J0W33_05460	COG1862	Preprotein translocase
J0W33_05480	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J0W33_05495	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J0W33_05500	COG5002	protein histidine kinase activity
J0W33_05500	COG0784	Response regulator, receiver
J0W33_05500	COG2205	protein histidine kinase activity
J0W33_05505	COG1024	Enoyl-CoA hydratase
J0W33_05515	COG3622	Belongs to the hyi family
J0W33_05540	COG0697	spore germination
J0W33_05545	COG2814	Major facilitator Superfamily
J0W33_05565	COG1546	Belongs to the CinA family
J0W33_05565	COG1058	Belongs to the CinA family
J0W33_05585	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J0W33_05590	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J0W33_05595	COG0084	hydrolase, TatD family'
J0W33_05610	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
J0W33_05625	COG0793	Belongs to the peptidase S41A family
J0W33_05655	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J0W33_05660	COG0280	phosphate acetyltransferase
J0W33_05660	COG0857	belongs to the CobB CobQ family
J0W33_05670	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
J0W33_05670	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
J0W33_05715	COG0740	serine-type endopeptidase activity
J0W33_05725	COG4771	TonB-dependent receptor
J0W33_05730	COG4774	siderophore transport
J0W33_05735	COG3128	pkhd-type hydroxylase
J0W33_05745	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J0W33_05750	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J0W33_05755	COG2813	Specifically methylates the guanine in position
J0W33_05755	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J0W33_05815	COG3040	lipid binding
J0W33_05845	COG0179	Fumarylacetoacetate (FAA) hydrolase
J0W33_05880	COG0557	exoribonuclease II activity
J0W33_05890	COG0339	signal peptide processing
J0W33_05895	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
J0W33_05905	COG0697	spore germination
J0W33_05910	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J0W33_05935	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
J0W33_05940	COG1960	acyl-CoA dehydrogenase activity
J0W33_05945	COG2072	flavoprotein involved in K transport
J0W33_05955	COG0202	RNA polymerase activity
J0W33_05960	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
J0W33_05995	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J0W33_06005	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J0W33_06010	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J0W33_06045	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
J0W33_06075	COG0088	Forms part of the polypeptide exit tunnel
J0W33_06105	COG0433	COG0433 Predicted ATPase
J0W33_06115	COG1959	2 iron, 2 sulfur cluster binding
J0W33_06135	COG1301	dicarboxylic acid transport
J0W33_06140	COG1946	Acyl-CoA thioesterase
J0W33_06145	COG2937	Belongs to the GPAT DAPAT family
J0W33_06155	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J0W33_06160	COG1040	competence protein
J0W33_06175	COG0598	Magnesium transport protein CorA
J0W33_06185	COG2854	intermembrane phospholipid transfer
J0W33_06190	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J0W33_06195	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J0W33_06200	COG1127	ABC transporter
J0W33_06225	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J0W33_06230	COG0408	coproporphyrinogen oxidase activity
J0W33_06245	COG1960	acyl-CoA dehydrogenase activity
J0W33_06250	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J0W33_06260	COG0534	Mate efflux family protein
J0W33_06265	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J0W33_06270	COG0254	rRNA binding
J0W33_06275	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
J0W33_06305	COG1192	Involved in chromosome partitioning
J0W33_06310	COG0628	permease
J0W33_06320	COG2814	Major facilitator Superfamily
J0W33_06335	COG0277	FAD linked oxidase domain protein
J0W33_06340	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J0W33_06365	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J0W33_06370	COG5380	lipid catabolic process
J0W33_06375	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
J0W33_06390	COG3385	transposase activity
J0W33_06400	COG0335	large ribosomal subunit rRNA binding
J0W33_06410	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J0W33_06415	COG0228	four-way junction DNA binding
J0W33_06450	COG4969	Belongs to the N-Me-Phe pilin family
J0W33_06460	COG0194	GDP metabolic process
J0W33_06465	COG1758	RNA polymerase activity
J0W33_06470	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J0W33_06490	COG3307	-O-antigen
J0W33_06525	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
J0W33_06530	COG1704	LemA family
J0W33_06540	COG0493	'glutamate synthase
J0W33_06545	COG0067	glutamate synthase
J0W33_06545	COG0069	glutamate synthase activity
J0W33_06545	COG0070	glutamate synthase
J0W33_06595	COG2226	methyltransferase
J0W33_06605	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J0W33_06610	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J0W33_06625	COG0275	rRNA processing
J0W33_06630	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
J0W33_06640	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J0W33_06660	COG0488	(ABC) transporter
J0W33_06670	COG4221	oxidoreductase activity
J0W33_06705	COG0427	acetyl-CoA hydrolase
J0W33_06735	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J0W33_06755	COG0697	spore germination
J0W33_06770	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
J0W33_06815	COG3158	transport of potassium into the cell
J0W33_06880	COG3077	Addiction module antitoxin, RelB DinJ family
J0W33_06895	COG2132	Multicopper oxidase
J0W33_06900	COG3713	MltA-interacting MipA family protein
J0W33_06905	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J0W33_06995	COG0629	single-stranded DNA binding
J0W33_07000	COG2814	Major facilitator Superfamily
J0W33_07010	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J0W33_07015	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J0W33_07030	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J0W33_07050	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J0W33_07055	COG3162	membrane
J0W33_07060	COG0784	Response regulator, receiver
J0W33_07060	COG2205	protein histidine kinase activity
J0W33_07075	COG0431	NADPH-dependent FMN reductase
J0W33_07085	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J0W33_07090	COG0668	transmembrane transport
J0W33_07095	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J0W33_07100	COG1519	Transferase
J0W33_07105	COG1902	pentaerythritol trinitrate reductase activity
J0W33_07130	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J0W33_07155	COG0426	domain, Protein
J0W33_07155	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J0W33_07160	COG2119	membrane
J0W33_07190	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J0W33_07200	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J0W33_07210	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J0W33_07215	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J0W33_07220	COG0189	ligase activity
J0W33_07240	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J0W33_07325	COG0708	Exodeoxyribonuclease III
J0W33_07330	COG1393	Belongs to the ArsC family
J0W33_07345	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J0W33_07350	COG3706	GGDEF domain
J0W33_07355	COG0625	glutathione transferase activity
J0W33_07395	COG1247	-acetyltransferase
J0W33_07400	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J0W33_07405	COG4266	Belongs to the allantoicase family
J0W33_07410	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
J0W33_07425	COG0471	metal ion transport
J0W33_07465	COG3150	esterase
J0W33_07475	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
J0W33_07480	COG2918	glutathione biosynthetic process
J0W33_07495	COG2733	membrane
J0W33_07500	COG0436	Aminotransferase
J0W33_07505	COG0534	Mate efflux family protein
J0W33_07510	COG2175	clavaminate synthase activity
J0W33_07555	COG0753	catalase activity
J0W33_07575	COG0560	Phosphoserine phosphatase
J0W33_07575	COG3830	Belongs to the UPF0237 family
J0W33_07590	COG0385	Bile acid
J0W33_07595	COG1335	isochorismatase
J0W33_07600	COG2814	Major facilitator Superfamily
J0W33_07605	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J0W33_07615	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J0W33_07620	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J0W33_07625	COG2983	Belongs to the UPF0260 family
J0W33_07630	COG5487	UPF0391 membrane protein
J0W33_07645	COG1194	a g-specific adenine glycosylase
J0W33_07650	COG0739	heme binding
J0W33_07660	COG2818	Glycosylase
J0W33_07665	COG1064	alcohol dehydrogenase
J0W33_07685	COG3023	N-Acetylmuramoyl-L-alanine amidase
J0W33_07700	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J0W33_07705	COG1309	transcriptional regulator
J0W33_07715	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J0W33_07720	COG0546	phosphoglycolate phosphatase activity
J0W33_07725	COG1028	Short-chain dehydrogenase reductase Sdr
J0W33_07750	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J0W33_07750	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J0W33_07755	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J0W33_07760	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J0W33_07765	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J0W33_07770	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J0W33_07775	COG1116	anion transmembrane transporter activity
J0W33_07780	COG1309	transcriptional regulator
J0W33_07790	COG0196	riboflavin kinase activity
J0W33_07795	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J0W33_07800	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
J0W33_07805	COG1047	Peptidyl-prolyl cis-trans
J0W33_07815	COG2133	pyrroloquinoline quinone binding
J0W33_07820	COG2814	Major facilitator Superfamily
J0W33_07850	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J0W33_07860	COG0657	acetylesterase activity
J0W33_07895	COG2951	lytic endotransglycosylase activity
J0W33_07900	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J0W33_07920	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J0W33_07930	COG2388	GCN5-related N-acetyl-transferase
J0W33_07940	COG0861	Integral membrane protein TerC family
J0W33_07945	COG0402	S-adenosylhomocysteine deaminase activity
J0W33_07965	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J0W33_07970	COG1230	cation diffusion facilitator family transporter
J0W33_07995	COG0706	membrane insertase activity
J0W33_08000	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J0W33_08005	COG0594	ribonuclease P activity
J0W33_08015	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J0W33_08020	COG0592	DNA-directed DNA polymerase activity
J0W33_08030	COG0187	DNA topoisomerase II activity
J0W33_08035	COG1063	alcohol dehydrogenase
J0W33_08040	COG0488	(ABC) transporter
J0W33_08065	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
J0W33_08070	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J0W33_08080	COG0737	Belongs to the 5'-nucleotidase family
J0W33_08110	COG2814	Major facilitator Superfamily
J0W33_08120	COG1012	belongs to the aldehyde dehydrogenase family
J0W33_08125	COG0733	neurotransmitter:sodium symporter activity
J0W33_08135	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J0W33_08150	COG0129	dihydroxy-acid dehydratase activity
J0W33_08170	COG2233	PERMEase
J0W33_08180	COG1309	transcriptional regulator
J0W33_08185	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J0W33_08240	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J0W33_08275	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J0W33_08285	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J0W33_08295	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J0W33_08310	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J0W33_08315	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J0W33_08325	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J0W33_08340	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
J0W33_08380	COG0659	secondary active sulfate transmembrane transporter activity
J0W33_08415	COG3173	Aminoglycoside phosphotransferase
J0W33_08425	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J0W33_08465	COG1570	exodeoxyribonuclease VII activity
J0W33_08480	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J0W33_08485	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J0W33_08550	COG3586	endonuclease activity
J0W33_08570	COG3756	Protein conserved in bacteria
J0W33_08605	COG0271	Belongs to the BolA IbaG family
J0W33_08615	COG1192	Involved in chromosome partitioning
J0W33_08630	COG0586	Pfam SNARE associated Golgi protein
J0W33_08635	COG2259	Doxx family
J0W33_08640	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J0W33_08640	COG0519	Catalyzes the synthesis of GMP from XMP
J0W33_08680	COG0281	malic enzyme
J0W33_08740	COG2837	iron assimilation
J0W33_08750	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J0W33_08755	COG1121	(ABC) transporter
J0W33_08805	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J0W33_08830	COG0386	Belongs to the glutathione peroxidase family
J0W33_08850	COG0758	DNA mediated transformation
J0W33_08900	COG2814	Major facilitator Superfamily
J0W33_08920	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J0W33_08935	COG2814	Major facilitator Superfamily
J0W33_08955	COG1253	flavin adenine dinucleotide binding
J0W33_08965	COG2860	membrane
J0W33_08970	COG0477	Major facilitator Superfamily
J0W33_08980	COG0318	PFAM AMP-dependent synthetase and ligase
J0W33_08995	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J0W33_09020	COG0347	Belongs to the P(II) protein family
J0W33_09025	COG0004	ammonium transporteR
J0W33_09035	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J0W33_09035	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J0W33_09050	COG0586	Pfam SNARE associated Golgi protein
J0W33_09075	COG0795	lipopolysaccharide-transporting ATPase activity
J0W33_09080	COG0795	lipopolysaccharide-transporting ATPase activity
J0W33_09085	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
J0W33_09090	COG0793	Belongs to the peptidase S41A family
J0W33_09105	COG2197	response regulator
J0W33_09115	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J0W33_09130	COG4974	Belongs to the 'phage' integrase family
J0W33_09155	COG0772	Belongs to the SEDS family
J0W33_09165	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J0W33_09170	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
J0W33_09175	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
J0W33_09180	COG0494	nUDIX hydrolase
J0W33_09215	COG3275	phosphorelay sensor kinase activity
J0W33_09225	COG0181	hydroxymethylbilane synthase activity
J0W33_09245	COG0824	Thioesterase
J0W33_09330	COG0081	regulation of translation
J0W33_09345	COG0085	RNA polymerase activity
J0W33_09350	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J0W33_09370	COG2056	Na+-H+ antiporter family
J0W33_09385	COG0326	Molecular chaperone. Has ATPase activity
J0W33_09415	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
J0W33_09425	COG2233	PERMEase
J0W33_09435	COG1250	3-hydroxyacyl-CoA dehydrogenase
J0W33_09435	COG1024	Enoyl-CoA hydratase
J0W33_09465	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J0W33_09470	COG1132	(ABC) transporter
J0W33_09485	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J0W33_09495	COG0497	DNA recombination
J0W33_09500	COG3123	guanosine phosphorylase activity
J0W33_09505	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J0W33_09515	COG0237	dephospho-CoA kinase activity
J0W33_09565	COG0779	Required for maturation of 30S ribosomal subunits
J0W33_09570	COG0195	Participates in both transcription termination and antitermination
J0W33_09580	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J0W33_09585	COG1320	monovalent cation:proton antiporter activity
J0W33_09590	COG2212	antiporter activity
J0W33_09595	COG1863	multisubunit Na H antiporter MnhE subunit
J0W33_09600	COG0651	ATP synthesis coupled electron transport
J0W33_09605	COG1006	Multisubunit Na H antiporter MnhC subunit
J0W33_09610	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J0W33_09610	COG2111	Na H antiporter
J0W33_09625	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J0W33_09635	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J0W33_09665	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
J0W33_09670	COG1074	ATP-dependent DNA helicase activity
J0W33_09675	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J0W33_09680	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J0W33_09695	COG2841	Protein conserved in bacteria
J0W33_09700	COG0789	Transcriptional regulator
J0W33_09710	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
J0W33_09720	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J0W33_09740	COG0815	Transfers the fatty acyl group on membrane lipoproteins
J0W33_09745	COG4535	Mg2 and Co2 transporter CorC
J0W33_09750	COG0425	Belongs to the sulfur carrier protein TusA family
J0W33_09780	COG2826	transposase and inactivated derivatives, IS30 family
J0W33_09850	COG0644	oxidoreductase
J0W33_09850	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
J0W33_09860	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J0W33_09875	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J0W33_09885	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
J0W33_09895	COG0493	'glutamate synthase
J0W33_09895	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
J0W33_09920	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J0W33_09950	COG0751	glycine-tRNA ligase activity
J0W33_09960	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J0W33_09960	COG0617	tRNA 3'-terminal CCA addition
J0W33_09960	COG0517	IMP dehydrogenase activity
J0W33_09965	COG1983	PspC domain protein
J0W33_09990	COG0318	PFAM AMP-dependent synthetase and ligase
J0W33_09995	COG1530	ribonuclease E activity
J0W33_10005	COG0546	phosphoglycolate phosphatase activity
J0W33_10010	COG3971	2-oxopent-4-enoate hydratase activity
J0W33_10015	COG4569	acetaldehyde dehydrogenase (acetylating) activity
J0W33_10055	COG0583	DNA-binding transcription factor activity
J0W33_10060	COG4638	Rieske (2fe-2S)
J0W33_10075	COG1028	Short-chain dehydrogenase reductase Sdr
J0W33_10080	COG3384	dioxygenase
J0W33_10085	COG0446	pyridine nucleotide-disulphide oxidoreductase
J0W33_10100	COG0753	catalase activity
J0W33_10110	COG1960	acyl-CoA dehydrogenase activity
J0W33_10130	COG0494	nUDIX hydrolase
J0W33_10145	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J0W33_10160	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
J0W33_10175	COG0473	3-isopropylmalate dehydrogenase activity
J0W33_10225	COG1560	Kdo2-lipid A biosynthetic process
J0W33_10230	COG0488	(ABC) transporter
J0W33_10235	COG2900	Belongs to the SlyX family
J0W33_10265	COG1929	Belongs to the glycerate kinase type-1 family
J0W33_10275	COG0210	DNA helicase
J0W33_10280	COG0724	RNA recognition motif
J0W33_10295	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J0W33_10295	COG4651	solute:proton antiporter activity
J0W33_10320	COG0788	formyltetrahydrofolate deformylase activity
J0W33_10350	COG1295	ribonuclease BN
J0W33_10395	COG1702	phosphate starvation-inducible protein PhoH
J0W33_10405	COG0739	heme binding
J0W33_10405	COG0741	lytic transglycosylase activity
J0W33_10405	COG1196	nuclear chromosome segregation
J0W33_10445	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
J0W33_10450	COG1183	phosphatidylcholine synthase activity
J0W33_10515	COG1607	acyl-coa hydrolase
J0W33_10525	COG1666	GTP binding
J0W33_10545	COG2350	Protein conserved in bacteria
J0W33_10555	COG0613	PHP domain protein
J0W33_10560	COG3781	membrane
J0W33_10570	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J0W33_10580	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J0W33_10590	COG1162	GTPase activity
J0W33_10595	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J0W33_10630	COG3209	COG3209 Rhs family protein
J0W33_10670	COG3328	transposase activity
J0W33_10700	COG1136	(ABC) transporter
J0W33_10700	COG0577	efflux transmembrane transporter activity
J0W33_10705	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J0W33_10730	COG0028	Belongs to the TPP enzyme family
J0W33_10735	COG0440	acetolactate synthase activity
J0W33_10775	COG2975	iron-sulfur cluster assembly
J0W33_10805	COG0124	histidyl-tRNA synthetase
J0W33_10815	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J0W33_10830	COG3956	TIGRFAM MazG family protein
J0W33_10835	COG1555	photosystem II stabilization
J0W33_10840	COG0617	tRNA 3'-terminal CCA addition
J0W33_10845	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J0W33_10860	COG1660	Displays ATPase and GTPase activities
J0W33_10870	COG3028	Belongs to the UPF0307 family
J0W33_10875	COG0318	PFAM AMP-dependent synthetase and ligase
J0W33_10890	COG0625	glutathione transferase activity
J0W33_10895	COG1238	metal cluster binding
J0W33_10930	COG0072	phenylalanine-tRNA ligase activity
J0W33_10955	COG0248	Ppx GppA phosphatase
J0W33_10965	COG0037	tRNA processing
J0W33_11010	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J0W33_11060	COG2969	positive regulation of protein catabolic process
J0W33_11065	COG0625	glutathione transferase activity
J0W33_11070	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J0W33_11080	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
J0W33_11085	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J0W33_11090	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J0W33_11125	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J0W33_11135	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J0W33_11140	COG1408	metallophosphoesterase
J0W33_11150	COG0477	Major facilitator Superfamily
J0W33_11155	COG1272	protein, Hemolysin III
J0W33_11180	COG1250	3-hydroxyacyl-CoA dehydrogenase
J0W33_11180	COG1024	Enoyl-CoA hydratase
J0W33_11185	COG0183	Belongs to the thiolase family
J0W33_11190	COG2207	Transcriptional regulator
J0W33_11195	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J0W33_11200	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J0W33_11215	COG0183	Belongs to the thiolase family
J0W33_11235	COG0833	amino acid
J0W33_11245	COG2233	PERMEase
J0W33_11250	COG1217	gtp-binding protein TYPA
J0W33_11255	COG1970	mechanosensitive ion channel activity
J0W33_11260	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J0W33_11270	COG1877	trehalose-phosphatase activity
J0W33_11275	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
J0W33_11285	COG0363	glucosamine-6-phosphate deaminase activity
J0W33_11315	COG0354	folic acid binding
J0W33_11350	COG0564	pseudouridine synthase activity
J0W33_11365	COG3189	MarR family transcriptional regulator
J0W33_11370	COG2824	Alkylphosphonate utilization operon protein PhnA
J0W33_11380	COG0628	permease
J0W33_11395	COG2801	Transposase and inactivated derivatives
J0W33_11400	COG2801	Transposase and inactivated derivatives
J0W33_11405	COG1028	Short-chain dehydrogenase reductase Sdr
J0W33_11415	COG2801	Transposase and inactivated derivatives
J0W33_11425	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J0W33_11445	COG0730	response to heat
J0W33_11455	COG1196	nuclear chromosome segregation
J0W33_11460	COG3115	cell septum assembly
J0W33_11465	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J0W33_11470	COG2193	ferroxidase activity
J0W33_11475	COG2226	methyltransferase
J0W33_11475	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J0W33_11475	COG0596	Alpha beta hydrolase
J0W33_11490	COG4106	trans-aconitate 2-methyltransferase activity
J0W33_11505	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
J0W33_11510	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
J0W33_11525	COG0009	L-threonylcarbamoyladenylate synthase
J0W33_11530	COG3101	peptidyl-lysine hydroxylation
J0W33_11535	COG1399	metal-binding, possibly nucleic acid-binding protein
J0W33_11550	COG1028	Short-chain dehydrogenase reductase Sdr
J0W33_11560	COG1652	LysM domain
J0W33_11565	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J0W33_11575	COG0745	RESPONSE REGULATOR receiver
J0W33_11580	COG2205	protein histidine kinase activity
J0W33_11585	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J0W33_11600	COG1752	Esterase of the alpha-beta hydrolase superfamily
J0W33_11615	COG3338	carbonate dehydratase activity
J0W33_11620	COG1126	abc transporter atp-binding protein
J0W33_11625	COG0765	amino acid transport
J0W33_11630	COG0765	amino acid transport
J0W33_11640	COG2323	membrane
J0W33_11655	COG2852	Protein conserved in bacteria
J0W33_11665	COG3328	transposase activity
J0W33_11670	COG0525	valine-tRNA ligase activity
J0W33_11685	COG0393	Putative heavy-metal-binding
J0W33_11690	COG0393	Putative heavy-metal-binding
J0W33_11700	COG1538	Outer membrane efflux protein
J0W33_11710	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J0W33_11715	COG0671	phosphoesterase, PA-phosphatase related
J0W33_11740	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
J0W33_11750	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J0W33_11755	COG1648	precorrin-2 dehydrogenase activity
J0W33_11755	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J0W33_11760	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
J0W33_11765	COG0531	amino acid
J0W33_11780	COG0321	lipoyl(octanoyl) transferase activity
J0W33_11790	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J0W33_11815	COG0586	Pfam SNARE associated Golgi protein
J0W33_11855	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J0W33_11885	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
J0W33_11900	COG0358	DNA primase activity
J0W33_11920	COG0564	pseudouridine synthase activity
J0W33_11935	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J0W33_11945	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J0W33_11975	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J0W33_11975	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J0W33_11990	COG2425	protein containing a von Willebrand factor type A (vWA) domain
J0W33_12005	COG2072	flavoprotein involved in K transport
J0W33_12020	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
J0W33_12025	COG1053	succinate dehydrogenase
J0W33_12030	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J0W33_12045	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J0W33_12055	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
J0W33_12075	COG2268	Band 7 protein
J0W33_12090	COG2354	Protein conserved in bacteria
J0W33_12095	COG2321	neutral zinc metallopeptidase
J0W33_12105	COG0589	response to stress
J0W33_12110	COG0110	maltose O-acetyltransferase activity
J0W33_12115	COG0415	Belongs to the DNA photolyase family
J0W33_12130	COG0505	Belongs to the CarA family
J0W33_12145	COG1534	Rna-binding protein
J0W33_12155	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J0W33_12200	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J0W33_12220	COG1597	lipid kinase activity
J0W33_12245	COG0584	glycerophosphoryl diester phosphodiesterase
J0W33_12255	COG2239	Acts as a magnesium transporter
J0W33_12265	COG0501	Belongs to the peptidase M48B family
J0W33_12270	COG0739	heme binding
J0W33_12270	COG0741	lytic transglycosylase activity
J0W33_12270	COG1196	nuclear chromosome segregation
J0W33_12275	COG0037	tRNA processing
J0W33_12285	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
J0W33_12300	COG2189	Belongs to the N(4) N(6)-methyltransferase family
J0W33_12310	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J0W33_12315	COG1074	ATP-dependent DNA helicase activity
J0W33_12320	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J0W33_12335	COG2826	transposase and inactivated derivatives, IS30 family
J0W33_12345	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J0W33_12365	COG1840	ABC-type Fe3 transport system, periplasmic component
J0W33_12370	COG3842	ATPase activity
J0W33_12375	COG1741	Belongs to the pirin family
J0W33_12385	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
J0W33_12390	COG3739	integral membrane protein
J0W33_12405	COG3706	GGDEF domain
J0W33_12415	COG0302	gtp cyclohydrolase
J0W33_12435	COG0512	Glutamine amidotransferase of anthranilate synthase
J0W33_12440	COG0174	glutamine synthetase
J0W33_12450	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
J0W33_12495	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J0W33_12500	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J0W33_12520	COG1115	amino acid carrier protein
J0W33_12525	COG1113	amino acid transport
J0W33_12535	COG0019	diaminopimelate decarboxylase activity
J0W33_12550	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
J0W33_12560	COG1522	sequence-specific DNA binding
J0W33_12565	COG1280	lysine exporter protein (LysE YggA)
J0W33_12610	COG1671	Belongs to the UPF0178 family
J0W33_12625	COG4591	ABC-type transport system involved in lipoprotein release permease component
J0W33_12630	COG1136	(ABC) transporter
J0W33_12635	COG2333	competence protein COMEC
J0W33_12635	COG0658	competence protein
J0W33_12655	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J0W33_12660	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J0W33_12665	COG0628	permease
J0W33_12670	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J0W33_12700	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J0W33_12720	COG0823	Involved in the tonB-independent uptake of proteins
J0W33_12740	COG0824	Thioesterase
J0W33_12750	COG2255	four-way junction helicase activity
J0W33_12770	COG0047	phosphoribosylformylglycinamidine synthase activity
J0W33_12770	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J0W33_12785	COG0778	Nitroreductase
J0W33_12790	COG1024	Enoyl-CoA hydratase
J0W33_12795	COG1051	belongs to the nudix hydrolase family
J0W33_12795	COG1056	cytidyltransferase-related domain
J0W33_12800	COG2353	YceI-like domain
J0W33_12805	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J0W33_12815	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
J0W33_12820	COG0602	queuosine metabolic process
J0W33_12840	COG0583	DNA-binding transcription factor activity
J0W33_12845	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J0W33_12850	COG4208	sulfate ABC transporter
J0W33_12865	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
J0W33_12875	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J0W33_12890	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J0W33_12900	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J0W33_12915	COG0681	Belongs to the peptidase S26 family
J0W33_12925	COG0571	ribonuclease III activity
J0W33_12930	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J0W33_12940	COG1381	Involved in DNA repair and RecF pathway recombination
J0W33_12945	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J0W33_12970	COG0436	Aminotransferase
J0W33_12990	COG0556	nucleotide-excision repair
J0W33_13020	COG0702	epimerase
J0W33_13025	COG1733	regulation of RNA biosynthetic process
J0W33_13030	COG2814	Major facilitator Superfamily
J0W33_13040	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J0W33_13050	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J0W33_13055	COG0076	glutamate decarboxylase activity
J0W33_13065	COG0573	inorganic phosphate transmembrane transporter activity
J0W33_13075	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J0W33_13080	COG0616	signal peptide processing
J0W33_13130	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
J0W33_13135	COG1686	Belongs to the peptidase S11 family
J0W33_13150	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
J0W33_13160	COG0583	DNA-binding transcription factor activity
J0W33_13165	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J0W33_13170	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J0W33_13175	COG1067	ATP-dependent peptidase activity
J0W33_13210	COG1509	lysine 2,3-aminomutase activity
J0W33_13215	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J0W33_13220	COG1966	Carbon starvation protein
J0W33_13225	COG2879	small protein
J0W33_13230	COG0714	Associated with various cellular activities
J0W33_13260	COG2252	PERMEase
J0W33_13265	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J0W33_13275	COG1215	transferase activity, transferring glycosyl groups
J0W33_13285	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J0W33_13295	COG0527	aspartate kinase activity
J0W33_13305	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J0W33_13320	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J0W33_13325	COG0501	Belongs to the peptidase M48B family
J0W33_13340	COG0667	Aldo Keto reductase
J0W33_13350	COG1765	OsmC-like protein
J0W33_13370	COG0540	Belongs to the ATCase OTCase family
J0W33_13385	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J0W33_13400	COG4770	biotin carboxylase activity
J0W33_13405	COG1024	Enoyl-CoA hydratase
J0W33_13410	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J0W33_13415	COG1960	acyl-CoA dehydrogenase activity
J0W33_13420	COG1309	transcriptional regulator
J0W33_13425	COG0318	PFAM AMP-dependent synthetase and ligase
J0W33_13445	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J0W33_13455	COG0659	secondary active sulfate transmembrane transporter activity
J0W33_13475	COG2363	Small membrane protein
J0W33_13495	COG0513	Belongs to the DEAD box helicase family
J0W33_13560	COG4783	chaperone-mediated protein folding
J0W33_13575	COG1610	YqeY-like protein
J0W33_13605	COG0515	serine threonine protein kinase
J0W33_13605	COG2815	serine threonine protein kinase
J0W33_13645	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
J0W33_13645	COG2755	lipolytic protein G-D-S-L family
J0W33_13650	COG0436	Aminotransferase
J0W33_13655	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J0W33_13660	COG0386	Belongs to the glutathione peroxidase family
J0W33_13670	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
J0W33_13685	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
J0W33_13695	COG0012	GTP binding
J0W33_13720	COG0204	Acyl-transferase
J0W33_13770	COG1373	ATPase (AAA superfamily
J0W33_13815	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
J0W33_13815	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
J0W33_13820	COG2801	Transposase and inactivated derivatives
J0W33_13880	COG3328	transposase activity
J0W33_13885	COG0582	viral genome integration into host DNA
J0W33_13890	COG0582	viral genome integration into host DNA
J0W33_13965	COG0783	Belongs to the Dps family
J0W33_13970	COG2814	Major facilitator Superfamily
J0W33_13975	COG2030	dehydratase
J0W33_13975	COG1012	belongs to the aldehyde dehydrogenase family
J0W33_13980	COG3396	Phenylacetate-CoA oxygenase
J0W33_13985	COG3460	Phenylacetate-CoA oxygenase
J0W33_13990	COG3396	Phenylacetate-CoA oxygenase
J0W33_13995	COG2151	metal-sulfur cluster biosynthetic enzyme
J0W33_14000	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J0W33_14005	COG1024	Enoyl-CoA hydratase
J0W33_14010	COG1024	Enoyl-CoA hydratase
J0W33_14015	COG1250	3-hydroxyacyl-CoA dehydrogenase
J0W33_14025	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
J0W33_14030	COG3327	negative regulation of DNA-templated transcription, initiation
J0W33_14040	COG0318	PFAM AMP-dependent synthetase and ligase
J0W33_14060	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J0W33_14065	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
J0W33_14065	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J0W33_14070	COG1254	Belongs to the acylphosphatase family
J0W33_14105	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J0W33_14110	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J0W33_14120	COG2353	YceI-like domain
J0W33_14125	COG0519	Catalyzes the synthesis of GMP from XMP
J0W33_14125	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J0W33_14155	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J0W33_14160	COG0583	DNA-binding transcription factor activity
J0W33_14170	COG2707	UPF0756 membrane protein
J0W33_14195	COG0802	atpase or kinase
J0W33_14200	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J0W33_14210	COG1923	regulation of RNA biosynthetic process
J0W33_14215	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J0W33_14225	COG3178	'Phosphotransferase
J0W33_14230	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon