locus-tag class description JYB86_00005 PF08299 Bacterial dnaA protein helix-turn-helix JYB86_00005 PF00308 Bacterial dnaA protein JYB86_00005 PF11638 DnaA N-terminal domain JYB86_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JYB86_00010 PF02767 DNA polymerase III beta subunit, central domain JYB86_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JYB86_00015 PF02463 RecF/RecN/SMC N terminal domain JYB86_00020 PF01751 Toprim domain JYB86_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_00020 PF18053 DNA gyrase B subunit insert domain JYB86_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JYB86_00020 PF00204 DNA gyrase B JYB86_00025 PF13823 Alcohol dehydrogenase GroES-associated JYB86_00025 PF00107 Zinc-binding dehydrogenase JYB86_00025 PF08240 Alcohol dehydrogenase GroES-like domain JYB86_00045 PF12848 ABC transporter JYB86_00045 PF00005 ABC transporter JYB86_00055 PF01797 Transposase IS200 like JYB86_00080 PF01521 Iron-sulphur cluster biosynthesis JYB86_00085 PF03702 Anhydro-N-acetylmuramic acid kinase JYB86_00090 PF00579 tRNA synthetases class I (W and Y) JYB86_00115 PF00149 Calcineurin-like phosphoesterase JYB86_00115 PF02872 5'-nucleotidase, C-terminal domain JYB86_00145 PF07690 Major Facilitator Superfamily JYB86_00155 PF00171 Aldehyde dehydrogenase family JYB86_00160 PF00209 Sodium:neurotransmitter symporter family JYB86_00170 PF01029 NusB family JYB86_00170 PF01189 16S rRNA methyltransferase RsmB/F JYB86_00175 PF02911 Formyl transferase, C-terminal domain JYB86_00175 PF00551 Formyl transferase JYB86_00180 PF00920 Dehydratase family JYB86_00185 PF00920 Dehydratase family JYB86_00205 PF00860 Permease family JYB86_00210 PF00311 Phosphoenolpyruvate carboxylase JYB86_00215 PF00440 Bacterial regulatory proteins, tetR family JYB86_00220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JYB86_00225 PF00873 AcrB/AcrD/AcrF family JYB86_00235 PF01556 DnaJ C terminal domain JYB86_00235 PF00684 DnaJ central domain JYB86_00235 PF00226 DnaJ domain JYB86_00245 PF01113 Dihydrodipicolinate reductase, N-terminus JYB86_00245 PF05173 Dihydrodipicolinate reductase, C-terminus JYB86_00255 PF14052 Capsule assembly protein Wzi JYB86_00260 PF02706 Chain length determinant protein JYB86_00260 PF13807 G-rich domain on putative tyrosine kinase JYB86_00260 PF13614 AAA domain JYB86_00265 PF01451 Low molecular weight phosphotyrosine protein phosphatase JYB86_00270 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JYB86_00270 PF10531 SLBB domain JYB86_00270 PF02563 Polysaccharide biosynthesis/export protein JYB86_00275 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JYB86_00275 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JYB86_00275 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JYB86_00280 PF01370 NAD dependent epimerase/dehydratase family JYB86_00285 PF16363 GDP-mannose 4,6 dehydratase JYB86_00290 PF00483 Nucleotidyl transferase JYB86_00295 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JYB86_00300 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_00310 PF00535 Glycosyl transferase family 2 JYB86_00310 PF02709 N-terminal domain of galactosyltransferase JYB86_00315 PF00535 Glycosyl transferase family 2 JYB86_00325 PF13537 Glutamine amidotransferase domain JYB86_00325 PF00733 Asparagine synthase JYB86_00335 PF13477 Glycosyl transferase 4-like JYB86_00335 PF00534 Glycosyl transferases group 1 JYB86_00340 PF02397 Bacterial sugar transferase JYB86_00345 PF14602 Hexapeptide repeat of succinyl-transferase JYB86_00345 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_00345 PF17836 PglD N-terminal domain JYB86_00350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JYB86_00355 PF02719 Polysaccharide biosynthesis protein JYB86_00360 PF00483 Nucleotidyl transferase JYB86_00365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JYB86_00365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JYB86_00365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JYB86_00370 PF00342 Phosphoglucose isomerase JYB86_00375 PF16363 GDP-mannose 4,6 dehydratase JYB86_00380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JYB86_00380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JYB86_00380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JYB86_00380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JYB86_00390 PF06527 TniQ JYB86_00390 PF15978 Tn7-like transposition protein D JYB86_00395 PF13401 AAA domain JYB86_00395 PF11426 Tn7 transposition regulator TnsC JYB86_00400 PF00665 Integrase core domain JYB86_00410 PF01380 SIS domain JYB86_00415 PF12804 MobA-like NTP transferase domain JYB86_00415 PF14602 Hexapeptide repeat of succinyl-transferase JYB86_00415 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_00420 PF04608 Phosphatidylglycerophosphatase A JYB86_00425 PF00586 AIR synthase related protein, N-terminal domain JYB86_00425 PF02769 AIR synthase related protein, C-terminal domain JYB86_00430 PF01029 NusB family JYB86_00435 PF00885 6,7-dimethyl-8-ribityllumazine synthase JYB86_00440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JYB86_00440 PF00925 GTP cyclohydrolase II JYB86_00445 PF13610 DDE domain JYB86_00460 PF07690 Major Facilitator Superfamily JYB86_00465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_00465 PF03466 LysR substrate binding domain JYB86_00480 PF01494 FAD binding domain JYB86_00485 PF12697 Alpha/beta hydrolase family JYB86_00500 PF13610 DDE domain JYB86_00520 PF00809 Pterin binding enzyme JYB86_00525 PF00893 Small Multidrug Resistance protein JYB86_00530 PF13427 Domain of unknown function (DUF4111) JYB86_00540 PF00186 Dihydrofolate reductase JYB86_00545 PF13495 Phage integrase, N-terminal SAM-like domain JYB86_00545 PF00589 Phage integrase family JYB86_00550 PF00563 EAL domain JYB86_00550 PF11809 Domain of unknown function (DUF3330) JYB86_00555 PF02796 Helix-turn-helix domain of resolvase JYB86_00555 PF00239 Resolvase, N terminal domain JYB86_00560 PF01526 Tn3 transposase DDE domain JYB86_00560 PF13700 Domain of unknown function (DUF4158) JYB86_00570 PF03466 LysR substrate binding domain JYB86_00570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_00575 PF01636 Phosphotransferase enzyme family JYB86_00580 PF13610 DDE domain JYB86_00585 PF13495 Phage integrase, N-terminal SAM-like domain JYB86_00585 PF00589 Phage integrase family JYB86_00590 PF01494 FAD binding domain JYB86_00595 PF02796 Helix-turn-helix domain of resolvase JYB86_00595 PF00239 Resolvase, N terminal domain JYB86_00610 PF01636 Phosphotransferase enzyme family JYB86_00620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JYB86_00620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JYB86_00620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JYB86_00620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JYB86_00625 PF00809 Pterin binding enzyme JYB86_00645 PF04221 RelB antitoxin JYB86_00650 PF01965 DJ-1/PfpI family JYB86_00655 PF12706 Beta-lactamase superfamily domain JYB86_00660 PF00857 Isochorismatase family JYB86_00715 PF12161 HsdM N-terminal domain JYB86_00715 PF02384 N-6 DNA Methylase JYB86_00730 PF12008 Type I restriction and modification enzyme - subunit R C terminal JYB86_00730 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JYB86_00730 PF18766 SWI2/SNF2 ATPase JYB86_00745 PF07120 Protein of unknown function (DUF1376) JYB86_00780 PF01722 BolA-like protein JYB86_00790 PF13614 AAA domain JYB86_00805 PF09335 SNARE associated Golgi protein JYB86_00810 PF07681 DoxX JYB86_00815 PF02540 NAD synthase JYB86_00815 PF00117 Glutamine amidotransferase class-I JYB86_00815 PF00958 GMP synthase C terminal domain JYB86_00820 PF14338 Mrr N-terminal domain JYB86_00820 PF04471 Restriction endonuclease JYB86_00825 PF00990 Diguanylate cyclase, GGDEF domain JYB86_00825 PF00072 Response regulator receiver domain JYB86_00830 PF05726 Pirin C-terminal cupin domain JYB86_00830 PF02678 Pirin JYB86_00845 PF03485 Arginyl tRNA synthetase N terminal domain JYB86_00845 PF05746 DALR anticodon binding domain JYB86_00845 PF00750 tRNA synthetases class I (R) JYB86_00860 PF03949 Malic enzyme, NAD binding domain JYB86_00860 PF00390 Malic enzyme, N-terminal domain JYB86_00865 PF04717 Type VI secretion system, phage-baseplate injector JYB86_00865 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JYB86_00865 PF13296 Putative type VI secretion system Rhs element Vgr JYB86_00925 PF04261 Dyp-type peroxidase family JYB86_00930 PF01810 LysE type translocator JYB86_00935 PF00950 ABC 3 transport family JYB86_00940 PF00005 ABC transporter JYB86_00960 PF00119 ATP synthase A chain JYB86_00965 PF00137 ATP synthase subunit C JYB86_00970 PF00430 ATP synthase B/B' CF(0) JYB86_00975 PF00213 ATP synthase delta (OSCP) subunit JYB86_00980 PF00306 ATP synthase alpha/beta chain, C terminal domain JYB86_00980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JYB86_00980 PF02874 ATP synthase alpha/beta family, beta-barrel domain JYB86_00985 PF00231 ATP synthase JYB86_00990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JYB86_00990 PF02874 ATP synthase alpha/beta family, beta-barrel domain JYB86_00995 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JYB86_01010 PF05726 Pirin C-terminal cupin domain JYB86_01010 PF02678 Pirin JYB86_01020 PF00255 Glutathione peroxidase JYB86_01025 PF00892 EamA-like transporter family JYB86_01030 PF01300 Telomere recombination JYB86_01035 PF17782 DprA winged helix domain JYB86_01035 PF02481 DNA recombination-mediator protein A JYB86_01045 PF01327 Polypeptide deformylase JYB86_01085 PF07690 Major Facilitator Superfamily JYB86_01090 PF04055 Radical SAM superfamily JYB86_01090 PF11842 Domain of unknown function (DUF3362) JYB86_01090 PF08497 Radical SAM N-terminal JYB86_01105 PF00817 impB/mucB/samB family JYB86_01105 PF11799 impB/mucB/samB family C-terminal domain JYB86_01105 PF11798 IMS family HHH motif JYB86_01120 PF07690 Major Facilitator Superfamily JYB86_01140 PF03641 Possible lysine decarboxylase JYB86_01145 PF03471 Transporter associated domain JYB86_01145 PF03741 Integral membrane protein TerC family JYB86_01145 PF00571 CBS domain JYB86_01150 PF02810 SEC-C motif JYB86_01155 PF03458 UPF0126 domain JYB86_01160 PF07690 Major Facilitator Superfamily JYB86_01165 PF03989 DNA gyrase C-terminal domain, beta-propeller JYB86_01165 PF00521 DNA gyrase/topoisomerase IV, subunit A JYB86_01170 PF00501 AMP-binding enzyme JYB86_01170 PF13193 AMP-binding enzyme C-terminal domain JYB86_01185 PF00719 Inorganic pyrophosphatase JYB86_01190 PF03573 outer membrane porin, OprD family JYB86_01200 PF13335 Magnesium chelatase, subunit ChlI C-terminal JYB86_01200 PF01078 Magnesium chelatase, subunit ChlI JYB86_01210 PF00543 Nitrogen regulatory protein P-II JYB86_01215 PF00909 Ammonium Transporter Family JYB86_01220 PF03477 ATP cone domain JYB86_01225 PF01872 RibD C-terminal domain JYB86_01225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JYB86_01235 PF00677 Lumazine binding domain JYB86_01240 PF09335 SNARE associated Golgi protein JYB86_01260 PF00883 Cytosol aminopeptidase family, catalytic domain JYB86_01260 PF02789 Cytosol aminopeptidase family, N-terminal domain JYB86_01265 PF03739 Lipopolysaccharide export system permease LptF/LptG JYB86_01270 PF03739 Lipopolysaccharide export system permease LptF/LptG JYB86_01275 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JYB86_01275 PF01676 Metalloenzyme superfamily JYB86_01280 PF00595 PDZ domain JYB86_01280 PF03572 Peptidase family S41 JYB86_01285 PF02954 Bacterial regulatory protein, Fis family JYB86_01285 PF00072 Response regulator receiver domain JYB86_01285 PF00158 Sigma-54 interaction domain JYB86_01290 PF00512 His Kinase A (phospho-acceptor) domain JYB86_01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_01295 PF00196 Bacterial regulatory proteins, luxR family JYB86_01295 PF00072 Response regulator receiver domain JYB86_01300 PF00768 D-alanyl-D-alanine carboxypeptidase JYB86_01305 PF00291 Pyridoxal-phosphate dependent enzyme JYB86_01310 PF01842 ACT domain JYB86_01310 PF00742 Homoserine dehydrogenase JYB86_01310 PF03447 Homoserine dehydrogenase, NAD binding domain JYB86_01315 PF13098 Thioredoxin-like domain JYB86_01315 PF10411 Disulfide bond isomerase protein N-terminus JYB86_01320 PF02899 Phage integrase, N-terminal SAM-like domain JYB86_01320 PF00589 Phage integrase family JYB86_01330 PF07670 Nucleoside recognition JYB86_01330 PF02421 Ferrous iron transport protein B JYB86_01330 PF07664 Ferrous iron transport protein B C terminus JYB86_01340 PF02875 Mur ligase family, glutamate ligase domain JYB86_01340 PF08245 Mur ligase middle domain JYB86_01345 PF01098 Cell cycle protein JYB86_01355 PF00749 tRNA synthetases class I (E and Q), catalytic domain JYB86_01360 PF01258 Prokaryotic dksA/traR C4-type zinc finger JYB86_01365 PF00149 Calcineurin-like phosphoesterase JYB86_01370 PF00293 NUDIX domain JYB86_01375 PF01964 Radical SAM ThiC family JYB86_01375 PF13667 ThiC-associated domain JYB86_01390 PF01895 PhoU domain JYB86_01395 PF04362 Bacterial Fe(2+) trafficking JYB86_01400 PF14698 Argininosuccinate lyase C-terminal JYB86_01400 PF00206 Lyase JYB86_01405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_01405 PF06580 Histidine kinase JYB86_01405 PF07694 5TMR of 5TMR-LYT JYB86_01410 PF00072 Response regulator receiver domain JYB86_01410 PF04397 LytTr DNA-binding domain JYB86_01415 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JYB86_01415 PF03900 Porphobilinogen deaminase, C-terminal domain JYB86_01435 PF03061 Thioesterase superfamily JYB86_01440 PF00816 H-NS histone family JYB86_01455 PF03958 Bacterial type II/III secretion system short domain JYB86_01455 PF00263 Bacterial type II and III secretion system protein JYB86_01460 PF16697 Inner membrane component of T3SS, cytoplasmic domain JYB86_01465 PF13419 Haloacid dehalogenase-like hydrolase JYB86_01470 PF04715 Anthranilate synthase component I, N terminal region JYB86_01470 PF00425 chorismate binding enzyme JYB86_01495 PF03144 Elongation factor Tu domain 2 JYB86_01495 PF00009 Elongation factor Tu GTP binding domain JYB86_01495 PF03143 Elongation factor Tu C-terminal domain JYB86_01505 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JYB86_01510 PF02357 Transcription termination factor nusG JYB86_01510 PF00467 KOW motif JYB86_01515 PF00298 Ribosomal protein L11, RNA binding domain JYB86_01515 PF03946 Ribosomal protein L11, N-terminal domain JYB86_01520 PF00687 Ribosomal protein L1p/L10e family JYB86_01525 PF00466 Ribosomal protein L10 JYB86_01530 PF00542 Ribosomal protein L7/L12 C-terminal domain JYB86_01530 PF16320 Ribosomal protein L7/L12 dimerisation domain JYB86_01535 PF04565 RNA polymerase Rpb2, domain 3 JYB86_01535 PF04561 RNA polymerase Rpb2, domain 2 JYB86_01535 PF00562 RNA polymerase Rpb2, domain 6 JYB86_01535 PF04560 RNA polymerase Rpb2, domain 7 JYB86_01535 PF04563 RNA polymerase beta subunit JYB86_01535 PF10385 RNA polymerase beta subunit external 1 domain JYB86_01540 PF04998 RNA polymerase Rpb1, domain 5 JYB86_01540 PF04997 RNA polymerase Rpb1, domain 1 JYB86_01540 PF04983 RNA polymerase Rpb1, domain 3 JYB86_01540 PF05000 RNA polymerase Rpb1, domain 4 JYB86_01540 PF00623 RNA polymerase Rpb1, domain 2 JYB86_01555 PF00561 alpha/beta hydrolase fold JYB86_01560 PF03553 Na+/H+ antiporter family JYB86_01560 PF13726 Na+-H+ antiporter family JYB86_01570 PF13613 Helix-turn-helix of DDE superfamily endonuclease JYB86_01570 PF13359 DDE superfamily endonuclease JYB86_01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_01585 PF00183 Hsp90 protein JYB86_01620 PF01323 DSBA-like thioredoxin domain JYB86_01630 PF00860 Permease family JYB86_01635 PF02803 Thiolase, C-terminal domain JYB86_01635 PF00108 Thiolase, N-terminal domain JYB86_01640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JYB86_01640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JYB86_01640 PF00378 Enoyl-CoA hydratase/isomerase JYB86_01655 PF07724 AAA domain (Cdc48 subfamily) JYB86_01655 PF10431 C-terminal, D2-small domain, of ClpB protein JYB86_01660 PF01541 GIY-YIG catalytic domain JYB86_01660 PF02151 UvrB/uvrC motif JYB86_01660 PF08459 UvrC Helix-hairpin-helix N-terminal JYB86_01670 PF01066 CDP-alcohol phosphatidyltransferase JYB86_01675 PF00005 ABC transporter JYB86_01675 PF00664 ABC transporter transmembrane region JYB86_01690 PF03652 Holliday junction resolvase JYB86_01695 PF02622 Uncharacterized ACR, COG1678 JYB86_01700 PF02463 RecF/RecN/SMC N terminal domain JYB86_01705 PF06865 Pyrimidine/purine nucleoside phosphorylase JYB86_01710 PF08032 RNA 2'-O ribose methyltransferase substrate binding JYB86_01710 PF00588 SpoU rRNA Methylase family JYB86_01720 PF01121 Dephospho-CoA kinase JYB86_01725 PF06750 Bacterial Peptidase A24 N-terminal domain JYB86_01725 PF01478 Type IV leader peptidase family JYB86_01730 PF00482 Type II secretion system (T2SS), protein F JYB86_01735 PF00437 Type II/IV secretion system protein JYB86_01735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JYB86_01740 PF00121 Triosephosphate isomerase JYB86_01745 PF03840 Preprotein translocase SecG subunit JYB86_01770 PF02576 RimP N-terminal domain JYB86_01770 PF17384 RimP C-terminal SH3 domain JYB86_01775 PF08529 NusA N-terminal domain JYB86_01775 PF13184 NusA-like KH domain JYB86_01775 PF00575 S1 RNA binding domain JYB86_01780 PF11987 Translation-initiation factor 2 JYB86_01780 PF04760 Translation initiation factor IF-2, N-terminal region JYB86_01780 PF00009 Elongation factor Tu GTP binding domain JYB86_01780 PF08364 Bacterial translation initiation factor IF-2 associated region JYB86_01785 PF02033 Ribosome-binding factor A JYB86_01800 PF13007 Transposase C of IS166 homeodomain JYB86_01800 PF03050 Transposase IS66 family JYB86_01800 PF13005 zinc-finger binding domain of transposase IS66 JYB86_01800 PF13817 IS66 C-terminal element JYB86_01805 PF03334 Na+/H+ antiporter subunit JYB86_01810 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JYB86_01815 PF01899 Na+/H+ ion antiporter subunit JYB86_01820 PF00361 Proton-conducting membrane transporter JYB86_01825 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JYB86_01830 PF00361 Proton-conducting membrane transporter JYB86_01830 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JYB86_01830 PF13244 Domain of unknown function (DUF4040) JYB86_01830 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JYB86_01845 PF01502 Phosphoribosyl-AMP cyclohydrolase JYB86_01855 PF03109 ABC1 family JYB86_01865 PF01209 ubiE/COQ5 methyltransferase family JYB86_01875 PF03976 Polyphosphate kinase 2 (PPK2) JYB86_01885 PF17946 RecC C-terminal domain JYB86_01890 PF12705 PD-(D/E)XK nuclease superfamily JYB86_01890 PF13361 UvrD-like helicase C-terminal domain JYB86_01890 PF00580 UvrD/REP helicase N-terminal domain JYB86_01895 PF13538 UvrD-like helicase C-terminal domain JYB86_01900 PF01385 Probable transposase JYB86_01900 PF07282 Putative transposase DNA-binding domain JYB86_01900 PF12323 Helix-turn-helix domain JYB86_01905 PF00312 Ribosomal protein S15 JYB86_01910 PF01138 3' exoribonuclease family, domain 1 JYB86_01910 PF00013 KH domain JYB86_01910 PF00575 S1 RNA binding domain JYB86_01910 PF03725 3' exoribonuclease family, domain 2 JYB86_01910 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JYB86_01920 PF04325 Protein of unknown function (DUF465) JYB86_01935 PF01430 Hsp33 protein JYB86_01940 PF02254 TrkA-N domain JYB86_01940 PF00999 Sodium/hydrogen exchanger family JYB86_01945 PF00270 DEAD/DEAH box helicase JYB86_01945 PF00271 Helicase conserved C-terminal domain JYB86_01945 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JYB86_01945 PF18074 Primosomal protein N C-terminal domain JYB86_01945 PF17764 3′ DNA-binding domain (3′BD) JYB86_01950 PF00482 Type II secretion system (T2SS), protein F JYB86_01955 PF08334 Type II secretion system (T2SS), protein G JYB86_01955 PF07963 Prokaryotic N-terminal methylation motif JYB86_01975 PF13005 zinc-finger binding domain of transposase IS66 JYB86_01975 PF13007 Transposase C of IS166 homeodomain JYB86_01975 PF03050 Transposase IS66 family JYB86_01975 PF13817 IS66 C-terminal element JYB86_01980 PF00795 Carbon-nitrogen hydrolase JYB86_01985 PF03471 Transporter associated domain JYB86_01985 PF00571 CBS domain JYB86_01990 PF01206 Sulfurtransferase TusA JYB86_01995 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JYB86_01995 PF04717 Type VI secretion system, phage-baseplate injector JYB86_01995 PF13296 Putative type VI secretion system Rhs element Vgr JYB86_02045 PF13007 Transposase C of IS166 homeodomain JYB86_02045 PF13005 zinc-finger binding domain of transposase IS66 JYB86_02045 PF13817 IS66 C-terminal element JYB86_02045 PF03050 Transposase IS66 family JYB86_02190 PF13005 zinc-finger binding domain of transposase IS66 JYB86_02190 PF03050 Transposase IS66 family JYB86_02190 PF13817 IS66 C-terminal element JYB86_02190 PF13007 Transposase C of IS166 homeodomain JYB86_02195 PF13276 HTH-like domain JYB86_02195 PF00665 Integrase core domain JYB86_02195 PF13333 Integrase core domain JYB86_02210 PF01177 Asp/Glu/Hydantoin racemase JYB86_02220 PF00762 Ferrochelatase JYB86_02225 PF00753 Metallo-beta-lactamase superfamily JYB86_02235 PF03884 DNA gyrase inhibitor YacG JYB86_02245 PF13247 4Fe-4S dicluster domain JYB86_02245 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JYB86_02245 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_02255 PF01209 ubiE/COQ5 methyltransferase family JYB86_02270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JYB86_02270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JYB86_02305 PF01797 Transposase IS200 like JYB86_02315 PF05746 DALR anticodon binding domain JYB86_02315 PF02092 Glycyl-tRNA synthetase beta subunit JYB86_02320 PF02091 Glycyl-tRNA synthetase alpha subunit JYB86_02325 PF01743 Poly A polymerase head domain JYB86_02325 PF00571 CBS domain JYB86_02330 PF04024 PspC domain JYB86_02355 PF13193 AMP-binding enzyme C-terminal domain JYB86_02355 PF00501 AMP-binding enzyme JYB86_02360 PF12111 Polyribonucleotide phosphorylase C terminal JYB86_02360 PF10150 Ribonuclease E/G family JYB86_02360 PF00575 S1 RNA binding domain JYB86_02365 PF01479 S4 domain JYB86_02365 PF00849 RNA pseudouridylate synthase JYB86_02370 PF13419 Haloacid dehalogenase-like hydrolase JYB86_02375 PF01557 Fumarylacetoacetate (FAA) hydrolase family JYB86_02380 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation JYB86_02380 PF01118 Semialdehyde dehydrogenase, NAD binding domain JYB86_02385 PF07836 DmpG-like communication domain JYB86_02385 PF00682 HMGL-like JYB86_02390 PF03573 outer membrane porin, OprD family JYB86_02395 PF00561 alpha/beta hydrolase fold JYB86_02405 PF03466 LysR substrate binding domain JYB86_02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_02410 PF00355 Rieske [2Fe-2S] domain JYB86_02410 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JYB86_02415 PF00866 Ring hydroxylating beta subunit JYB86_02420 PF00355 Rieske [2Fe-2S] domain JYB86_02425 PF00106 short chain dehydrogenase JYB86_02430 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JYB86_02435 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_02435 PF14759 Reductase C-terminal JYB86_02445 PF12706 Beta-lactamase superfamily domain JYB86_02450 PF06628 Catalase-related immune-responsive JYB86_02450 PF00199 Catalase JYB86_02460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_02460 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_02460 PF18158 Adaptive response protein AidB N-terminal domain JYB86_02475 PF01590 GAF domain JYB86_02475 PF05524 PEP-utilising enzyme, N-terminal JYB86_02475 PF00391 PEP-utilising enzyme, mobile domain JYB86_02475 PF02896 PEP-utilising enzyme, TIM barrel domain JYB86_02480 PF00293 NUDIX domain JYB86_02495 PF03781 Sulfatase-modifying factor enzyme 1 JYB86_02495 PF12867 DinB superfamily JYB86_02500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_02500 PF03466 LysR substrate binding domain JYB86_02510 PF00330 Aconitase family (aconitate hydratase) JYB86_02515 PF00694 Aconitase C-terminal domain JYB86_02525 PF00180 Isocitrate/isopropylmalate dehydrogenase JYB86_02535 PF01176 Translation initiation factor 1A / IF-1 JYB86_02550 PF01416 tRNA pseudouridine synthase JYB86_02570 PF01118 Semialdehyde dehydrogenase, NAD binding domain JYB86_02570 PF02774 Semialdehyde dehydrogenase, dimerisation domain JYB86_02580 PF03279 Bacterial lipid A biosynthesis acyltransferase JYB86_02585 PF16326 ABC transporter C-terminal domain JYB86_02585 PF00005 ABC transporter JYB86_02585 PF12848 ABC transporter JYB86_02590 PF04102 SlyX JYB86_02605 PF08272 Topoisomerase I zinc-ribbon-like JYB86_02605 PF01131 DNA topoisomerase JYB86_02605 PF01751 Toprim domain JYB86_02605 PF01396 Topoisomerase DNA binding C4 zinc finger JYB86_02615 PF01797 Transposase IS200 like JYB86_02650 PF00580 UvrD/REP helicase N-terminal domain JYB86_02650 PF13361 UvrD-like helicase C-terminal domain JYB86_02655 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JYB86_02670 PF02254 TrkA-N domain JYB86_02670 PF00999 Sodium/hydrogen exchanger family JYB86_02675 PF00471 Ribosomal protein L33 JYB86_02680 PF00830 Ribosomal L28 family JYB86_02685 PF00171 Aldehyde dehydrogenase family JYB86_02690 PF00440 Bacterial regulatory proteins, tetR family JYB86_02690 PF08360 QacR-like protein, C-terminal region JYB86_02695 PF01842 ACT domain JYB86_02695 PF00551 Formyl transferase JYB86_02705 PF01618 MotA/TolQ/ExbB proton channel family JYB86_02720 PF00892 EamA-like transporter family JYB86_02725 PF03631 Virulence factor BrkB JYB86_02730 PF03358 NADPH-dependent FMN reductase JYB86_02770 PF02130 Uncharacterized protein family UPF0054 JYB86_02775 PF02562 PhoH-like protein JYB86_02780 PF00919 Uncharacterized protein family UPF0004 JYB86_02780 PF01938 TRAM domain JYB86_02780 PF04055 Radical SAM superfamily JYB86_02785 PF01551 Peptidase family M23 JYB86_02785 PF10145 Phage-related minor tail protein JYB86_02785 PF01464 Transglycosylase SLT domain JYB86_02795 PF00056 lactate/malate dehydrogenase, NAD binding domain JYB86_02795 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JYB86_02825 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JYB86_02830 PF01066 CDP-alcohol phosphatidyltransferase JYB86_02865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JYB86_02865 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_02865 PF00403 Heavy-metal-associated domain JYB86_02880 PF04273 Putative phosphatase (DUF442) JYB86_02880 PF00753 Metallo-beta-lactamase superfamily JYB86_02890 PF00085 Thioredoxin JYB86_02895 PF03061 Thioesterase superfamily JYB86_02905 PF04461 Protein of unknown function (DUF520) JYB86_02915 PF01266 FAD dependent oxidoreductase JYB86_02915 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JYB86_02925 PF03795 YCII-related domain JYB86_02930 PF04279 Intracellular septation protein A JYB86_02935 PF02811 PHP domain JYB86_02940 PF01062 Bestrophin, RFP-TM, chloride channel JYB86_02945 PF04002 RadC-like JAB domain JYB86_02950 PF04127 DNA / pantothenate metabolism flavoprotein JYB86_02950 PF02441 Flavoprotein JYB86_02955 PF02556 Preprotein translocase subunit SecB JYB86_02960 PF00462 Glutaredoxin JYB86_02970 PF03193 RsgA GTPase JYB86_02975 PF00929 Exonuclease JYB86_02990 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JYB86_02990 PF04717 Type VI secretion system, phage-baseplate injector JYB86_02990 PF13296 Putative type VI secretion system Rhs element Vgr JYB86_03145 PF13006 Insertion element 4 transposase N-terminal JYB86_03145 PF01609 Transposase DDE domain JYB86_03185 PF02321 Outer membrane efflux protein JYB86_03190 PF12704 MacB-like periplasmic core domain JYB86_03190 PF02687 FtsX-like permease family JYB86_03190 PF00005 ABC transporter JYB86_03195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JYB86_03210 PF08264 Anticodon-binding domain of tRNA JYB86_03210 PF09334 tRNA synthetases class I (M) JYB86_03210 PF00133 tRNA synthetases class I (I, L, M and V) JYB86_03210 PF13603 Leucyl-tRNA synthetase, Domain 2 JYB86_03220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JYB86_03220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JYB86_03220 PF00205 Thiamine pyrophosphate enzyme, central domain JYB86_03225 PF10369 Small subunit of acetolactate synthase JYB86_03230 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JYB86_03230 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JYB86_03255 PF00534 Glycosyl transferases group 1 JYB86_03255 PF13439 Glycosyltransferase Family 4 JYB86_03260 PF01569 PAP2 superfamily JYB86_03265 PF04384 Iron-sulphur cluster assembly JYB86_03270 PF00334 Nucleoside diphosphate kinase JYB86_03275 PF04055 Radical SAM superfamily JYB86_03285 PF13464 Domain of unknown function (DUF4115) JYB86_03290 PF04551 GcpE protein JYB86_03295 PF13393 Histidyl-tRNA synthetase JYB86_03295 PF03129 Anticodon binding domain JYB86_03305 PF01011 PQQ enzyme repeat JYB86_03305 PF13360 PQQ-like domain JYB86_03310 PF01926 50S ribosome-binding GTPase JYB86_03310 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JYB86_03320 PF03819 MazG nucleotide pyrophosphohydrolase domain JYB86_03330 PF01743 Poly A polymerase head domain JYB86_03330 PF12626 Polymerase A arginine-rich C-terminus JYB86_03330 PF12627 Probable RNA and SrmB- binding site of polymerase A JYB86_03335 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JYB86_03340 PF02548 Ketopantoate hydroxymethyltransferase JYB86_03345 PF02569 Pantoate-beta-alanine ligase JYB86_03350 PF03668 P-loop ATPase protein family JYB86_03355 PF00381 PTS HPr component phosphorylation site JYB86_03360 PF04751 Protein of unknown function (DUF615) JYB86_03365 PF13193 AMP-binding enzyme C-terminal domain JYB86_03365 PF00501 AMP-binding enzyme JYB86_03370 PF03129 Anticodon binding domain JYB86_03370 PF02824 TGS domain JYB86_03370 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JYB86_03370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JYB86_03375 PF00707 Translation initiation factor IF-3, C-terminal domain JYB86_03375 PF05198 Translation initiation factor IF-3, N-terminal domain JYB86_03380 PF02798 Glutathione S-transferase, N-terminal domain JYB86_03380 PF00043 Glutathione S-transferase, C-terminal domain JYB86_03385 PF09335 SNARE associated Golgi protein JYB86_03395 PF01632 Ribosomal protein L35 JYB86_03400 PF00453 Ribosomal protein L20 JYB86_03415 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JYB86_03415 PF01409 tRNA synthetases class II core domain (F) JYB86_03420 PF03483 B3/4 domain JYB86_03420 PF03484 tRNA synthetase B5 domain JYB86_03420 PF01588 Putative tRNA binding domain JYB86_03420 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JYB86_03420 PF03147 Ferredoxin-fold anticodon binding domain JYB86_03425 PF00216 Bacterial DNA-binding protein JYB86_03435 PF07497 Rho termination factor, RNA-binding domain JYB86_03435 PF07498 Rho termination factor, N-terminal domain JYB86_03435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JYB86_03440 PF00085 Thioredoxin JYB86_03445 PF02541 Ppx/GppA phosphatase family JYB86_03450 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JYB86_03455 PF11734 TilS substrate C-terminal domain JYB86_03455 PF09179 TilS substrate binding domain JYB86_03455 PF01171 PP-loop family JYB86_03460 PF14748 Pyrroline-5-carboxylate reductase dimerisation JYB86_03460 PF03807 NADP oxidoreductase coenzyme F420-dependent JYB86_03465 PF02325 YGGT family JYB86_03470 PF00476 DNA polymerase family A JYB86_03470 PF01612 3'-5' exonuclease JYB86_03470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JYB86_03470 PF01367 5'-3' exonuclease, C-terminal SAM fold JYB86_03490 PF00437 Type II/IV secretion system protein JYB86_03500 PF00795 Carbon-nitrogen hydrolase JYB86_03550 PF04386 Stringent starvation protein B JYB86_03555 PF00043 Glutathione S-transferase, C-terminal domain JYB86_03555 PF02798 Glutathione S-transferase, N-terminal domain JYB86_03560 PF00380 Ribosomal protein S9/S16 JYB86_03565 PF00572 Ribosomal protein L13 JYB86_03570 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JYB86_03575 PF00398 Ribosomal RNA adenine dimethylase JYB86_03580 PF00149 Calcineurin-like phosphoesterase JYB86_03610 PF16360 GTP-binding GTPase Middle Region JYB86_03610 PF13167 GTP-binding GTPase N-terminal JYB86_03610 PF01926 50S ribosome-binding GTPase JYB86_03620 PF13091 PLD-like domain JYB86_03625 PF00149 Calcineurin-like phosphoesterase JYB86_03635 PF07690 Major Facilitator Superfamily JYB86_03635 PF00083 Sugar (and other) transporter JYB86_03640 PF03006 Haemolysin-III related JYB86_03650 PF13673 Acetyltransferase (GNAT) domain JYB86_03660 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JYB86_03660 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JYB86_03660 PF00378 Enoyl-CoA hydratase/isomerase JYB86_03665 PF02803 Thiolase, C-terminal domain JYB86_03665 PF00108 Thiolase, N-terminal domain JYB86_03670 PF12833 Helix-turn-helix domain JYB86_03670 PF02311 AraC-like ligand binding domain JYB86_03675 PF02515 CoA-transferase family III JYB86_03680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JYB86_03680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JYB86_03690 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain JYB86_03690 PF01113 Dihydrodipicolinate reductase, N-terminus JYB86_03700 PF00108 Thiolase, N-terminal domain JYB86_03700 PF02803 Thiolase, C-terminal domain JYB86_03705 PF07963 Prokaryotic N-terminal methylation motif JYB86_03705 PF00114 Pilin (bacterial filament) JYB86_03710 PF00691 OmpA family JYB86_03710 PF13505 Outer membrane protein beta-barrel domain JYB86_03720 PF00324 Amino acid permease JYB86_03725 PF05175 Methyltransferase small domain JYB86_03725 PF08468 Methyltransferase small domain N-terminal JYB86_03730 PF00860 Permease family JYB86_03735 PF00679 Elongation factor G C-terminus JYB86_03735 PF00009 Elongation factor Tu GTP binding domain JYB86_03735 PF03144 Elongation factor Tu domain 2 JYB86_03740 PF01741 Large-conductance mechanosensitive channel, MscL JYB86_03750 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JYB86_03750 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JYB86_03750 PF06827 Zinc finger found in FPG and IleRS JYB86_03755 PF02358 Trehalose-phosphatase JYB86_03760 PF00982 Glycosyltransferase family 20 JYB86_03770 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JYB86_03770 PF02585 GlcNAc-PI de-N-acetylase JYB86_03785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JYB86_03800 PF01571 Aminomethyltransferase folate-binding domain JYB86_03805 PF00694 Aconitase C-terminal domain JYB86_03805 PF00330 Aconitase family (aconitate hydratase) JYB86_03830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JYB86_03835 PF00849 RNA pseudouridylate synthase JYB86_03850 PF04343 Protein of unknown function, DUF488 JYB86_03855 PF08274 PhnA Zinc-Ribbon JYB86_03855 PF03831 PhnA domain JYB86_03865 PF01594 AI-2E family transporter JYB86_03875 PF01207 Dihydrouridine synthase (Dus) JYB86_03880 PF02566 OsmC-like protein JYB86_03885 PF01047 MarR family JYB86_03900 PF00448 SRP54-type protein, GTPase domain JYB86_03900 PF02978 Signal peptide binding domain JYB86_03900 PF02881 SRP54-type protein, helical bundle domain JYB86_03910 PF03309 Type III pantothenate kinase JYB86_03920 PF01925 Sulfite exporter TauE/SafE JYB86_03930 PF06470 SMC proteins Flexible Hinge Domain JYB86_03930 PF02463 RecF/RecN/SMC N terminal domain JYB86_03935 PF04354 ZipA, C-terminal FtsZ-binding domain JYB86_03940 PF00533 BRCA1 C Terminus (BRCT) domain JYB86_03940 PF01653 NAD-dependent DNA ligase adenylation domain JYB86_03940 PF03120 NAD-dependent DNA ligase OB-fold domain JYB86_03940 PF12826 Helix-hairpin-helix motif JYB86_03940 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JYB86_03945 PF00210 Ferritin-like domain JYB86_03950 PF08241 Methyltransferase domain JYB86_03950 PF12697 Alpha/beta hydrolase family JYB86_03955 PF06968 Biotin and Thiamin Synthesis associated domain JYB86_03955 PF04055 Radical SAM superfamily JYB86_03955 PF00202 Aminotransferase class-III JYB86_03960 PF00155 Aminotransferase class I and II JYB86_03975 PF01479 S4 domain JYB86_03975 PF00849 RNA pseudouridylate synthase JYB86_03980 PF04079 Segregation and condensation complex subunit ScpB JYB86_03985 PF02616 Segregation and condensation protein ScpA JYB86_04000 PF01300 Telomere recombination JYB86_04005 PF04315 Elongation factor P hydroxylase JYB86_04010 PF02620 Large ribosomal RNA subunit accumulation protein YceD JYB86_04015 PF01783 Ribosomal L32p protein family JYB86_04020 PF00698 Acyl transferase domain JYB86_04030 PF00550 Phosphopantetheine attachment site JYB86_04035 PF01476 LysM domain JYB86_04035 PF04972 BON domain JYB86_04045 PF00268 Ribonucleotide reductase, small chain JYB86_04050 PF03477 ATP cone domain JYB86_04050 PF00317 Ribonucleotide reductase, all-alpha domain JYB86_04050 PF02867 Ribonucleotide reductase, barrel domain JYB86_04055 PF00486 Transcriptional regulatory protein, C terminal JYB86_04055 PF00072 Response regulator receiver domain JYB86_04060 PF00512 His Kinase A (phospho-acceptor) domain JYB86_04060 PF00672 HAMP domain JYB86_04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_04065 PF00474 Sodium:solute symporter family JYB86_04070 PF01145 SPFH domain / Band 7 family JYB86_04080 PF01734 Patatin-like phospholipase JYB86_04095 PF00194 Eukaryotic-type carbonic anhydrase JYB86_04100 PF00005 ABC transporter JYB86_04105 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_04110 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_04115 PF00497 Bacterial extracellular solute-binding proteins, family 3 JYB86_04120 PF04239 Protein of unknown function (DUF421) JYB86_04150 PF00133 tRNA synthetases class I (I, L, M and V) JYB86_04150 PF10458 Valyl tRNA synthetase tRNA binding arm JYB86_04150 PF08264 Anticodon-binding domain of tRNA JYB86_04165 PF01906 Putative heavy-metal-binding JYB86_04170 PF01906 Putative heavy-metal-binding JYB86_04180 PF02321 Outer membrane efflux protein JYB86_04185 PF00873 AcrB/AcrD/AcrF family JYB86_04190 PF00529 HlyD membrane-fusion protein of T1SS JYB86_04190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JYB86_04195 PF01569 PAP2 superfamily JYB86_04205 PF00348 Polyprenyl synthetase JYB86_04210 PF00829 Ribosomal prokaryotic L21 protein JYB86_04215 PF01016 Ribosomal L27 protein JYB86_04220 PF03548 Outer membrane lipoprotein carrier protein LolA JYB86_04230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JYB86_04230 PF02403 Seryl-tRNA synthetase N-terminal domain JYB86_04235 PF14824 Sirohaem biosynthesis protein central JYB86_04235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JYB86_04235 PF10414 Sirohaem synthase dimerisation region JYB86_04240 PF00588 SpoU rRNA Methylase family JYB86_04245 PF13520 Amino acid permease JYB86_04250 PF00465 Iron-containing alcohol dehydrogenase JYB86_04260 PF03099 Biotin/lipoate A/B protein ligase family JYB86_04265 PF04359 Protein of unknown function (DUF493) JYB86_04270 PF04539 Sigma-70 region 3 JYB86_04270 PF04542 Sigma-70 region 2 JYB86_04270 PF00140 Sigma-70 factor, region 1.2 JYB86_04270 PF03979 Sigma-70 factor, region 1.1 JYB86_04270 PF04546 Sigma-70, non-essential region JYB86_04270 PF04545 Sigma-70, region 4 JYB86_04295 PF09335 SNARE associated Golgi protein JYB86_04305 PF00581 Rhodanese-like domain JYB86_04305 PF17773 UPF0176 acylphosphatase like domain JYB86_04320 PF02261 Aspartate decarboxylase JYB86_04325 PF01195 Peptidyl-tRNA hydrolase JYB86_04330 PF01386 Ribosomal L25p family JYB86_04335 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JYB86_04335 PF14572 Phosphoribosyl synthetase-associated domain JYB86_04360 PF08544 GHMP kinases C terminal JYB86_04360 PF00288 GHMP kinases N terminal domain JYB86_04365 PF03550 Outer membrane lipoprotein LolB JYB86_04375 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JYB86_04375 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JYB86_04375 PF01488 Shikimate / quinate 5-dehydrogenase JYB86_04380 PF10410 DnaB-helicase binding domain of primase JYB86_04380 PF08275 DNA primase catalytic core, N-terminal domain JYB86_04380 PF08278 DNA primase DnaG DnaB-binding JYB86_04380 PF01807 CHC2 zinc finger JYB86_04385 PF13525 Outer membrane lipoprotein JYB86_04390 PF00849 RNA pseudouridylate synthase JYB86_04390 PF01479 S4 domain JYB86_04395 PF02578 Multi-copper polyphenol oxidoreductase laccase JYB86_04405 PF01668 SmpB protein JYB86_04410 PF01467 Cytidylyltransferase-like JYB86_04415 PF00037 4Fe-4S binding domain JYB86_04445 PF00795 Carbon-nitrogen hydrolase JYB86_04445 PF02540 NAD synthase JYB86_04450 PF13296 Putative type VI secretion system Rhs element Vgr JYB86_04450 PF04717 Type VI secretion system, phage-baseplate injector JYB86_04450 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JYB86_04455 PF07728 AAA domain (dynein-related subfamily) JYB86_04455 PF12592 Protein of unknown function (DUF3763) JYB86_04455 PF17868 AAA lid domain JYB86_04460 PF05762 VWA domain containing CoxE-like protein JYB86_04475 PF00743 Flavin-binding monooxygenase-like JYB86_04480 PF13006 Insertion element 4 transposase N-terminal JYB86_04480 PF01609 Transposase DDE domain JYB86_04485 PF00285 Citrate synthase, C-terminal domain JYB86_04490 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JYB86_04495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JYB86_04500 PF02910 Fumarate reductase flavoprotein C-term JYB86_04500 PF00890 FAD binding domain JYB86_04505 PF13085 2Fe-2S iron-sulfur cluster binding domain JYB86_04510 PF16870 2-oxoglutarate dehydrogenase C-terminal JYB86_04510 PF00676 Dehydrogenase E1 component JYB86_04510 PF02779 Transketolase, pyrimidine binding domain JYB86_04510 PF16078 2-oxoglutarate dehydrogenase N-terminus JYB86_04515 PF02817 e3 binding domain JYB86_04515 PF00364 Biotin-requiring enzyme JYB86_04515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JYB86_04520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JYB86_04520 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_04525 PF00549 CoA-ligase JYB86_04525 PF08442 ATP-grasp domain JYB86_04530 PF02629 CoA binding domain JYB86_04530 PF00549 CoA-ligase JYB86_04540 PF01522 Polysaccharide deacetylase JYB86_04540 PF14883 Hypothetical glycosyl hydrolase family 13 JYB86_04545 PF00535 Glycosyl transferase family 2 JYB86_04555 PF15975 Flotillin JYB86_04555 PF01145 SPFH domain / Band 7 family JYB86_04565 PF00579 tRNA synthetases class I (W and Y) JYB86_04570 PF05661 Protein of unknown function (DUF808) JYB86_04575 PF04228 Putative neutral zinc metallopeptidase JYB86_04580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JYB86_04585 PF00582 Universal stress protein family JYB86_04590 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_04595 PF03441 FAD binding domain of DNA photolyase JYB86_04595 PF00875 DNA photolyase JYB86_04600 PF01272 Transcription elongation factor, GreA/GreB, C-term JYB86_04600 PF03449 Transcription elongation factor, N-terminal JYB86_04605 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JYB86_04605 PF02142 MGS-like domain JYB86_04605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JYB86_04610 PF00117 Glutamine amidotransferase class-I JYB86_04610 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JYB86_04625 PF01985 CRS1 / YhbY (CRM) domain JYB86_04630 PF01728 FtsJ-like methyltransferase JYB86_04635 PF00004 ATPase family associated with various cellular activities (AAA) JYB86_04635 PF01434 Peptidase family M41 JYB86_04635 PF17862 AAA+ lid domain JYB86_04635 PF06480 FtsH Extracellular JYB86_04645 PF00809 Pterin binding enzyme JYB86_04660 PF16655 PhoD-like phosphatase, N-terminal domain JYB86_04660 PF09423 PhoD-like phosphatase JYB86_04680 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JYB86_04680 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JYB86_04695 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JYB86_04695 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JYB86_04700 PF00781 Diacylglycerol kinase catalytic domain JYB86_04710 PF00166 Chaperonin 10 Kd subunit JYB86_04715 PF00118 TCP-1/cpn60 chaperonin family JYB86_04725 PF03009 Glycerophosphoryl diester phosphodiesterase family JYB86_04730 PF00873 AcrB/AcrD/AcrF family JYB86_04735 PF03448 MgtE intracellular N domain JYB86_04735 PF01769 Divalent cation transporter JYB86_04735 PF00571 CBS domain JYB86_04745 PF01435 Peptidase family M48 JYB86_04750 PF10145 Phage-related minor tail protein JYB86_04750 PF01464 Transglycosylase SLT domain JYB86_04750 PF01551 Peptidase family M23 JYB86_04755 PF01171 PP-loop family JYB86_04765 PF00497 Bacterial extracellular solute-binding proteins, family 3 JYB86_04765 PF01464 Transglycosylase SLT domain JYB86_04770 PF01272 Transcription elongation factor, GreA/GreB, C-term JYB86_04770 PF03449 Transcription elongation factor, N-terminal JYB86_04795 PF00005 ABC transporter JYB86_04800 PF02678 Pirin JYB86_04800 PF17954 Quercetinase C-terminal cupin domain JYB86_04810 PF01208 Uroporphyrinogen decarboxylase (URO-D) JYB86_04815 PF05675 Protein of unknown function (DUF817) JYB86_04830 PF00990 Diguanylate cyclase, GGDEF domain JYB86_04840 PF01227 GTP cyclohydrolase I JYB86_04850 PF00218 Indole-3-glycerol phosphate synthase JYB86_04855 PF00591 Glycosyl transferase family, a/b domain JYB86_04855 PF02885 Glycosyl transferase family, helical bundle domain JYB86_04860 PF00117 Glutamine amidotransferase class-I JYB86_04865 PF00120 Glutamine synthetase, catalytic domain JYB86_04865 PF03951 Glutamine synthetase, beta-Grasp domain JYB86_04870 PF04345 Chorismate lyase JYB86_04875 PF01040 UbiA prenyltransferase family JYB86_04885 PF03466 LysR substrate binding domain JYB86_04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_04890 PF01494 FAD binding domain JYB86_04920 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JYB86_04920 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JYB86_04925 PF01784 NIF3 (NGG1p interacting factor 3) JYB86_04930 PF17820 PDZ domain JYB86_04930 PF13180 PDZ domain JYB86_04940 PF18073 Rubredoxin metal binding domain JYB86_04945 PF01235 Sodium:alanine symporter family JYB86_04950 PF00324 Amino acid permease JYB86_04960 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JYB86_04960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JYB86_04965 PF01678 Diaminopimelate epimerase JYB86_04970 PF00561 alpha/beta hydrolase fold JYB86_04975 PF00589 Phage integrase family JYB86_04975 PF02899 Phage integrase, N-terminal SAM-like domain JYB86_04985 PF01037 Lrp/AsnC ligand binding domain JYB86_04990 PF01810 LysE type translocator JYB86_04995 PF01012 Electron transfer flavoprotein domain JYB86_05000 PF00766 Electron transfer flavoprotein FAD-binding domain JYB86_05000 PF01012 Electron transfer flavoprotein domain JYB86_05010 PF03989 DNA gyrase C-terminal domain, beta-propeller JYB86_05010 PF00521 DNA gyrase/topoisomerase IV, subunit A JYB86_05020 PF00266 Aminotransferase class-V JYB86_05035 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JYB86_05050 PF02687 FtsX-like permease family JYB86_05050 PF12704 MacB-like periplasmic core domain JYB86_05055 PF00005 ABC transporter JYB86_05060 PF00753 Metallo-beta-lactamase superfamily JYB86_05060 PF03772 Competence protein JYB86_05060 PF13567 Domain of unknown function (DUF4131) JYB86_05070 PF01343 Peptidase family S49 JYB86_05070 PF06965 Na+/H+ antiporter 1 JYB86_05080 PF00551 Formyl transferase JYB86_05085 PF00586 AIR synthase related protein, N-terminal domain JYB86_05085 PF02769 AIR synthase related protein, C-terminal domain JYB86_05090 PF01594 AI-2E family transporter JYB86_05095 PF11638 DnaA N-terminal domain JYB86_05095 PF00308 Bacterial dnaA protein JYB86_05095 PF08299 Bacterial dnaA protein helix-turn-helix JYB86_05125 PF00588 SpoU rRNA Methylase family JYB86_05125 PF08032 RNA 2'-O ribose methyltransferase substrate binding JYB86_05130 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JYB86_05140 PF00691 OmpA family JYB86_05145 PF07676 WD40-like Beta Propeller Repeat JYB86_05145 PF04052 TolB amino-terminal domain JYB86_05155 PF02472 Biopolymer transport protein ExbD/TolR JYB86_05160 PF01618 MotA/TolQ/ExbB proton channel family JYB86_05165 PF03061 Thioesterase superfamily JYB86_05175 PF05491 RuvB C-terminal winged helix domain JYB86_05175 PF17864 RuvB AAA lid domain JYB86_05175 PF05496 Holliday junction DNA helicase RuvB P-loop domain JYB86_05180 PF07499 RuvA, C-terminal domain JYB86_05180 PF01330 RuvA N terminal domain JYB86_05185 PF01966 HD domain JYB86_05205 PF15608 PELOTA RNA binding domain JYB86_05205 PF11202 Phosphoribosyl transferase (PRTase) JYB86_05220 PF02342 TerD domain JYB86_05230 PF02342 TerD domain JYB86_05235 PF02342 TerD domain JYB86_05245 PF02342 TerD domain JYB86_05260 PF02769 AIR synthase related protein, C-terminal domain JYB86_05260 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JYB86_05260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JYB86_05275 PF00881 Nitroreductase family JYB86_05280 PF00378 Enoyl-CoA hydratase/isomerase JYB86_05285 PF00293 NUDIX domain JYB86_05285 PF01467 Cytidylyltransferase-like JYB86_05290 PF04264 YceI-like domain JYB86_05295 PF00578 AhpC/TSA family JYB86_05305 PF06508 Queuosine biosynthesis protein QueC JYB86_05310 PF04055 Radical SAM superfamily JYB86_05315 PF14602 Hexapeptide repeat of succinyl-transferase JYB86_05315 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JYB86_05315 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_05330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_05330 PF03466 LysR substrate binding domain JYB86_05335 PF12857 TOBE-like domain JYB86_05335 PF00005 ABC transporter JYB86_05340 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_05345 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_05365 PF02618 YceG-like family JYB86_05370 PF02223 Thymidylate kinase JYB86_05380 PF13419 Haloacid dehalogenase-like hydrolase JYB86_05385 PF02910 Fumarate reductase flavoprotein C-term JYB86_05385 PF00890 FAD binding domain JYB86_05390 PF13180 PDZ domain JYB86_05400 PF00679 Elongation factor G C-terminus JYB86_05400 PF06421 GTP-binding protein LepA C-terminus JYB86_05400 PF00009 Elongation factor Tu GTP binding domain JYB86_05400 PF03144 Elongation factor Tu domain 2 JYB86_05405 PF10502 Signal peptidase, peptidase S26 JYB86_05415 PF14622 Ribonuclease-III-like JYB86_05415 PF00035 Double-stranded RNA binding motif JYB86_05420 PF07650 KH domain JYB86_05420 PF01926 50S ribosome-binding GTPase JYB86_05430 PF02565 Recombination protein O C terminal JYB86_05430 PF11967 Recombination protein O N terminal JYB86_05435 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JYB86_05440 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JYB86_05460 PF00155 Aminotransferase class I and II JYB86_05480 PF04851 Type III restriction enzyme, res subunit JYB86_05480 PF17757 UvrB interaction domain JYB86_05480 PF00271 Helicase conserved C-terminal domain JYB86_05480 PF02151 UvrB/uvrC motif JYB86_05480 PF12344 Ultra-violet resistance protein B JYB86_05490 PF00892 EamA-like transporter family JYB86_05495 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JYB86_05495 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JYB86_05510 PF05368 NmrA-like family JYB86_05515 PF01638 HxlR-like helix-turn-helix JYB86_05525 PF13613 Helix-turn-helix of DDE superfamily endonuclease JYB86_05525 PF13359 DDE superfamily endonuclease JYB86_05530 PF07690 Major Facilitator Superfamily JYB86_05535 PF01926 50S ribosome-binding GTPase JYB86_05535 PF01018 GTP1/OBG JYB86_05540 PF00696 Amino acid kinase family JYB86_05540 PF01472 PUA domain JYB86_05550 PF00202 Aminotransferase class-III JYB86_05555 PF00282 Pyridoxal-dependent decarboxylase conserved domain JYB86_05570 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_05575 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_05580 PF00005 ABC transporter JYB86_05585 PF08496 Peptidase family S49 N-terminal JYB86_05585 PF01343 Peptidase family S49 JYB86_05595 PF00206 Lyase JYB86_05595 PF08328 Adenylosuccinate lyase C-terminal JYB86_05600 PF04356 Protein of unknown function (DUF489) JYB86_05610 PF00293 NUDIX domain JYB86_05640 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_05645 PF00768 D-alanyl-D-alanine carboxypeptidase JYB86_05645 PF07943 Penicillin-binding protein 5, C-terminal domain JYB86_05660 PF01975 Survival protein SurE JYB86_05665 PF01551 Peptidase family M23 JYB86_05665 PF01476 LysM domain JYB86_05670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_05670 PF03466 LysR substrate binding domain JYB86_05675 PF00202 Aminotransferase class-III JYB86_05680 PF00462 Glutaredoxin JYB86_05685 PF13654 AAA domain JYB86_05685 PF05362 Lon protease (S16) C-terminal proteolytic domain JYB86_05690 PF07690 Major Facilitator Superfamily JYB86_05695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JYB86_05700 PF13593 SBF-like CPA transporter family (DUF4137) JYB86_05705 PF01197 Ribosomal protein L31 JYB86_05720 PF04055 Radical SAM superfamily JYB86_05725 PF09285 Elongation factor P, C-terminal JYB86_05725 PF08207 Elongation factor P (EF-P) KOW-like domain JYB86_05725 PF01132 Elongation factor P (EF-P) OB domain JYB86_05730 PF13722 5TM C-terminal transporter carbon starvation CstA JYB86_05730 PF02554 Carbon starvation protein CstA JYB86_05735 PF04328 Selenoprotein, putative JYB86_05740 PF07726 ATPase family associated with various cellular activities (AAA) JYB86_05740 PF17863 AAA lid domain JYB86_05750 PF11992 Domain of unknown function (DUF3488) JYB86_05750 PF13559 Domain of unknown function (DUF4129) JYB86_05750 PF01841 Transglutaminase-like superfamily JYB86_05820 PF00860 Permease family JYB86_05825 PF00962 Adenosine/AMP deaminase JYB86_05845 PF01351 Ribonuclease HII JYB86_05850 PF02599 Global regulator protein family JYB86_05855 PF00696 Amino acid kinase family JYB86_05855 PF13840 ACT domain JYB86_05855 PF01842 ACT domain JYB86_05860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JYB86_05860 PF02272 DHHA1 domain JYB86_05860 PF01411 tRNA synthetases class II (A) JYB86_05865 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JYB86_05865 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JYB86_05875 PF13393 Histidyl-tRNA synthetase JYB86_05880 PF00709 Adenylosuccinate synthetase JYB86_05885 PF01435 Peptidase family M48 JYB86_05900 PF00248 Aldo/keto reductase family JYB86_05905 PF13545 Crp-like helix-turn-helix domain JYB86_05905 PF00027 Cyclic nucleotide-binding domain JYB86_05910 PF02566 OsmC-like protein JYB86_05915 PF10431 C-terminal, D2-small domain, of ClpB protein JYB86_05915 PF00004 ATPase family associated with various cellular activities (AAA) JYB86_05915 PF17871 AAA lid domain JYB86_05915 PF07724 AAA domain (Cdc48 subfamily) JYB86_05915 PF02861 Clp amino terminal domain, pathogenicity island component JYB86_05925 PF01170 Putative RNA methylase family UPF0020 JYB86_05925 PF02926 THUMP domain JYB86_05925 PF10672 S-adenosylmethionine-dependent methyltransferase JYB86_05935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JYB86_05935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JYB86_05940 PF01979 Amidohydrolase family JYB86_05945 PF05736 OprF membrane domain JYB86_05945 PF00691 OmpA family JYB86_05950 PF01144 Coenzyme A transferase JYB86_05955 PF01144 Coenzyme A transferase JYB86_05960 PF00682 HMGL-like JYB86_05965 PF00364 Biotin-requiring enzyme JYB86_05965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JYB86_05965 PF00289 Biotin carboxylase, N-terminal domain JYB86_05965 PF18140 Propionyl-coenzyme A carboxylase BT domain JYB86_05965 PF02785 Biotin carboxylase C-terminal domain JYB86_05970 PF00378 Enoyl-CoA hydratase/isomerase JYB86_05975 PF01039 Carboxyl transferase domain JYB86_05980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_05980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_05980 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_05985 PF00440 Bacterial regulatory proteins, tetR family JYB86_05985 PF17925 Tetracyclin repressor-like, C-terminal domain JYB86_05990 PF13193 AMP-binding enzyme C-terminal domain JYB86_05990 PF00501 AMP-binding enzyme JYB86_06010 PF02390 Putative methyltransferase JYB86_06020 PF00916 Sulfate permease family JYB86_06020 PF01740 STAS domain JYB86_06025 PF00043 Glutathione S-transferase, C-terminal domain JYB86_06025 PF02798 Glutathione S-transferase, N-terminal domain JYB86_06030 PF13006 Insertion element 4 transposase N-terminal JYB86_06030 PF01609 Transposase DDE domain JYB86_06035 PF05690 Thiazole biosynthesis protein ThiG JYB86_06045 PF04241 Protein of unknown function (DUF423) JYB86_06050 PF04542 Sigma-70 region 2 JYB86_06050 PF04545 Sigma-70, region 4 JYB86_06050 PF00140 Sigma-70 factor, region 1.2 JYB86_06060 PF00313 'Cold-shock' DNA-binding domain JYB86_06065 PF00271 Helicase conserved C-terminal domain JYB86_06065 PF00270 DEAD/DEAH box helicase JYB86_06080 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JYB86_06080 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JYB86_06100 PF01180 Dihydroorotate dehydrogenase JYB86_06110 PF00156 Phosphoribosyl transferase domain JYB86_06125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JYB86_06125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JYB86_06130 PF01435 Peptidase family M48 JYB86_06145 PF09424 Yqey-like protein JYB86_06150 PF01165 Ribosomal protein S21 JYB86_06155 PF00814 Glycoprotease family JYB86_06175 PF03793 PASTA domain JYB86_06175 PF00069 Protein kinase domain JYB86_06210 PF16123 Hydroxyacylglutathione hydrolase C-terminus JYB86_06210 PF00753 Metallo-beta-lactamase superfamily JYB86_06215 PF01757 Acyltransferase family JYB86_06220 PF00155 Aminotransferase class I and II JYB86_06225 PF01641 SelR domain JYB86_06230 PF00255 Glutathione peroxidase JYB86_06235 PF00155 Aminotransferase class I and II JYB86_06240 PF01966 HD domain JYB86_06240 PF01909 Nucleotidyltransferase domain JYB86_06240 PF08335 GlnD PII-uridylyltransferase JYB86_06245 PF02222 ATP-grasp domain JYB86_06250 PF05437 Branched-chain amino acid transport protein (AzlD) JYB86_06255 PF03591 AzlC protein JYB86_06265 PF01926 50S ribosome-binding GTPase JYB86_06265 PF06071 Protein of unknown function (DUF933) JYB86_06285 PF01709 Transcriptional regulator JYB86_06290 PF01553 Acyltransferase JYB86_06340 PF13635 Domain of unknown function (DUF4143) JYB86_06340 PF13173 AAA domain JYB86_06375 PF00270 DEAD/DEAH box helicase JYB86_06375 PF00271 Helicase conserved C-terminal domain JYB86_06400 PF13195 Protein of unknown function (DUF4011) JYB86_06400 PF13087 AAA domain JYB86_06400 PF13086 AAA domain JYB86_06400 PF13195 Protein of unknown function (DUF4011) JYB86_06400 PF13086 AAA domain JYB86_06400 PF13087 AAA domain JYB86_06405 PF03050 Transposase IS66 family JYB86_06405 PF13817 IS66 C-terminal element JYB86_06405 PF13007 Transposase C of IS166 homeodomain JYB86_06405 PF13005 zinc-finger binding domain of transposase IS66 JYB86_06420 PF02661 Fic/DOC family JYB86_06460 PF13005 zinc-finger binding domain of transposase IS66 JYB86_06460 PF13817 IS66 C-terminal element JYB86_06460 PF13007 Transposase C of IS166 homeodomain JYB86_06460 PF03050 Transposase IS66 family JYB86_06470 PF00589 Phage integrase family JYB86_06470 PF13356 Arm DNA-binding domain JYB86_06485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JYB86_06490 PF02687 FtsX-like permease family JYB86_06490 PF12704 MacB-like periplasmic core domain JYB86_06495 PF00005 ABC transporter JYB86_06500 PF00512 His Kinase A (phospho-acceptor) domain JYB86_06500 PF00672 HAMP domain JYB86_06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_06505 PF00486 Transcriptional regulatory protein, C terminal JYB86_06505 PF00072 Response regulator receiver domain JYB86_06515 PF00576 HIUase/Transthyretin family JYB86_06530 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JYB86_06535 PF09297 NADH pyrophosphatase zinc ribbon domain JYB86_06535 PF00293 NUDIX domain JYB86_06575 PF00512 His Kinase A (phospho-acceptor) domain JYB86_06575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_06575 PF08521 Two-component sensor kinase N-terminal JYB86_06580 PF00486 Transcriptional regulatory protein, C terminal JYB86_06580 PF00072 Response regulator receiver domain JYB86_06595 PF03466 LysR substrate binding domain JYB86_06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_06600 PF00291 Pyridoxal-phosphate dependent enzyme JYB86_06605 PF00290 Tryptophan synthase alpha chain JYB86_06610 PF00925 GTP cyclohydrolase II JYB86_06615 PF01545 Cation efflux family JYB86_06650 PF13737 Transposase DDE domain JYB86_06675 PF07715 TonB-dependent Receptor Plug Domain JYB86_06675 PF00593 TonB dependent receptor JYB86_06685 PF02472 Biopolymer transport protein ExbD/TolR JYB86_06690 PF01618 MotA/TolQ/ExbB proton channel family JYB86_06695 PF02333 Phytase JYB86_06705 PF08448 PAS fold JYB86_06705 PF00563 EAL domain JYB86_06705 PF00990 Diguanylate cyclase, GGDEF domain JYB86_06725 PF13007 Transposase C of IS166 homeodomain JYB86_06725 PF13005 zinc-finger binding domain of transposase IS66 JYB86_06725 PF03050 Transposase IS66 family JYB86_06725 PF13817 IS66 C-terminal element JYB86_06740 PF00210 Ferritin-like domain JYB86_06745 PF07690 Major Facilitator Superfamily JYB86_06750 PF00171 Aldehyde dehydrogenase family JYB86_06750 PF01575 MaoC like domain JYB86_06755 PF05138 Phenylacetic acid catabolic protein JYB86_06760 PF06243 Phenylacetic acid degradation B JYB86_06765 PF05138 Phenylacetic acid catabolic protein JYB86_06770 PF01883 Iron-sulfur cluster assembly protein JYB86_06775 PF00970 Oxidoreductase FAD-binding domain JYB86_06775 PF00111 2Fe-2S iron-sulfur cluster binding domain JYB86_06775 PF00175 Oxidoreductase NAD-binding domain JYB86_06780 PF00378 Enoyl-CoA hydratase/isomerase JYB86_06785 PF00378 Enoyl-CoA hydratase/isomerase JYB86_06790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JYB86_06790 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain JYB86_06790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JYB86_06795 PF02803 Thiolase, C-terminal domain JYB86_06795 PF00108 Thiolase, N-terminal domain JYB86_06800 PF14535 AMP-binding enzyme C-terminal domain JYB86_06800 PF00501 AMP-binding enzyme JYB86_06805 PF08223 PaaX-like protein C-terminal domain JYB86_06805 PF07848 PaaX-like protein JYB86_06810 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_06815 PF00501 AMP-binding enzyme JYB86_06815 PF13193 AMP-binding enzyme C-terminal domain JYB86_06825 PF04055 Radical SAM superfamily JYB86_06825 PF06968 Biotin and Thiamin Synthesis associated domain JYB86_06835 PF08331 Domain of unknown function (DUF1730) JYB86_06840 PF01256 Carbohydrate kinase JYB86_06840 PF03853 YjeF-related protein N-terminus JYB86_06845 PF00708 Acylphosphatase JYB86_06850 PF02075 Crossover junction endodeoxyribonuclease RuvC JYB86_06860 PF01810 LysE type translocator JYB86_06875 PF08803 Putative mono-oxygenase ydhR JYB86_06880 PF00438 S-adenosylmethionine synthetase, N-terminal domain JYB86_06880 PF02773 S-adenosylmethionine synthetase, C-terminal domain JYB86_06880 PF02772 S-adenosylmethionine synthetase, central domain JYB86_06885 PF02779 Transketolase, pyrimidine binding domain JYB86_06885 PF02780 Transketolase, C-terminal domain JYB86_06885 PF00456 Transketolase, thiamine diphosphate binding domain JYB86_06895 PF04264 YceI-like domain JYB86_06900 PF13006 Insertion element 4 transposase N-terminal JYB86_06900 PF01609 Transposase DDE domain JYB86_06905 PF00958 GMP synthase C terminal domain JYB86_06905 PF00117 Glutamine amidotransferase class-I JYB86_06905 PF02540 NAD synthase JYB86_06910 PF00171 Aldehyde dehydrogenase family JYB86_06925 PF00465 Iron-containing alcohol dehydrogenase JYB86_06935 PF14493 Helix-turn-helix domain JYB86_06935 PF05970 PIF1-like helicase JYB86_06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_06940 PF03466 LysR substrate binding domain JYB86_06950 PF04284 Protein of unknown function (DUF441) JYB86_06955 PF01479 S4 domain JYB86_06955 PF00849 RNA pseudouridylate synthase JYB86_06970 PF01479 S4 domain JYB86_06970 PF00849 RNA pseudouridylate synthase JYB86_06975 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JYB86_06980 PF08676 MutL C terminal dimerisation domain JYB86_06980 PF01119 DNA mismatch repair protein, C-terminal domain JYB86_06990 PF17209 Hfq protein JYB86_06995 PF09312 SurA N-terminal domain JYB86_06995 PF00639 PPIC-type PPIASE domain JYB86_07000 PF03968 OstA-like protein JYB86_07000 PF04453 LPS transport system D JYB86_07005 PF01636 Phosphotransferase enzyme family JYB86_07010 PF00483 Nucleotidyl transferase JYB86_07015 PF02527 rRNA small subunit methyltransferase G JYB86_07020 PF13614 AAA domain JYB86_07025 PF17762 HTH domain found in ParB protein JYB86_07025 PF02195 ParB-like nuclease domain JYB86_07030 PF01618 MotA/TolQ/ExbB proton channel family JYB86_07040 PF00005 ABC transporter JYB86_07040 PF00664 ABC transporter transmembrane region JYB86_07045 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JYB86_07050 PF02348 Cytidylyltransferase JYB86_07055 PF09115 DNA polymerase III, delta subunit, C terminal JYB86_07065 PF01026 TatD related DNase JYB86_07075 PF12019 Type II transport protein GspH JYB86_07080 PF02501 Type II secretion system (T2SS), protein I JYB86_07080 PF07963 Prokaryotic N-terminal methylation motif JYB86_07085 PF07963 Prokaryotic N-terminal methylation motif JYB86_07085 PF11612 Type II secretion system (T2SS), protein J JYB86_07090 PF03934 Type II secretion system (T2SS), protein K JYB86_07100 PF03167 Uracil DNA glycosylase superfamily JYB86_07110 PF14437 MafB19-like deaminase JYB86_07120 PF02224 Cytidylate kinase JYB86_07125 PF00575 S1 RNA binding domain JYB86_07130 PF00216 Bacterial DNA-binding protein JYB86_07140 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JYB86_07150 PF03956 Lysine exporter LysO JYB86_07155 PF00743 Flavin-binding monooxygenase-like JYB86_07165 PF03969 AFG1-like ATPase JYB86_07170 PF01274 Malate synthase JYB86_07175 PF00171 Aldehyde dehydrogenase family JYB86_07190 PF03741 Integral membrane protein TerC family JYB86_07190 PF03471 Transporter associated domain JYB86_07210 PF05525 Branched-chain amino acid transport protein JYB86_07215 PF00557 Metallopeptidase family M24 JYB86_07220 PF03466 LysR substrate binding domain JYB86_07220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_07230 PF00072 Response regulator receiver domain JYB86_07230 PF02954 Bacterial regulatory protein, Fis family JYB86_07230 PF00158 Sigma-54 interaction domain JYB86_07235 PF00512 His Kinase A (phospho-acceptor) domain JYB86_07235 PF00989 PAS fold JYB86_07235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_07240 PF04055 Radical SAM superfamily JYB86_07240 PF00919 Uncharacterized protein family UPF0004 JYB86_07240 PF18693 TRAM domain JYB86_07245 PF00696 Amino acid kinase family JYB86_07250 PF01765 Ribosome recycling factor JYB86_07255 PF01255 Putative undecaprenyl diphosphate synthase JYB86_07265 PF13288 DXP reductoisomerase C-terminal domain JYB86_07265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JYB86_07265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JYB86_07270 PF13180 PDZ domain JYB86_07270 PF17820 PDZ domain JYB86_07270 PF02163 Peptidase family M50 JYB86_07275 PF07244 Surface antigen variable number repeat JYB86_07275 PF01103 Surface antigen JYB86_07285 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_07285 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JYB86_07290 PF07977 FabA-like domain JYB86_07295 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_07295 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JYB86_07300 PF01266 FAD dependent oxidoreductase JYB86_07315 PF02542 YgbB family JYB86_07325 PF00793 DAHP synthetase I family JYB86_07330 PF01925 Sulfite exporter TauE/SafE JYB86_07335 PF02684 Lipid-A-disaccharide synthetase JYB86_07340 PF12833 Helix-turn-helix domain JYB86_07340 PF12852 Cupin JYB86_07345 PF00487 Fatty acid desaturase JYB86_07350 PF00583 Acetyltransferase (GNAT) family JYB86_07355 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_07355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_07355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_07360 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_07360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_07360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_07365 PF03109 ABC1 family JYB86_07380 PF05175 Methyltransferase small domain JYB86_07385 PF01264 Chorismate synthase JYB86_07395 PF08173 Membrane bound YbgT-like protein JYB86_07400 PF02322 Cytochrome bd terminal oxidase subunit II JYB86_07405 PF01654 Cytochrome bd terminal oxidase subunit I JYB86_07415 PF07290 Protein of unknown function (DUF1449) JYB86_07425 PF00294 pfkB family carbohydrate kinase JYB86_07435 PF05193 Peptidase M16 inactive domain JYB86_07435 PF08367 Peptidase M16C associated JYB86_07435 PF00675 Insulinase (Peptidase family M16) JYB86_07440 PF02253 Phospholipase A1 JYB86_07445 PF02386 Cation transport protein JYB86_07450 PF02080 TrkA-C domain JYB86_07450 PF02254 TrkA-N domain JYB86_07455 PF00291 Pyridoxal-phosphate dependent enzyme JYB86_07455 PF00585 C-terminal regulatory domain of Threonine dehydratase JYB86_07460 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JYB86_07470 PF01118 Semialdehyde dehydrogenase, NAD binding domain JYB86_07470 PF02774 Semialdehyde dehydrogenase, dimerisation domain JYB86_07480 PF02617 ATP-dependent Clp protease adaptor protein ClpS JYB86_07485 PF10431 C-terminal, D2-small domain, of ClpB protein JYB86_07485 PF02861 Clp amino terminal domain, pathogenicity island component JYB86_07485 PF17871 AAA lid domain JYB86_07485 PF00004 ATPase family associated with various cellular activities (AAA) JYB86_07485 PF07724 AAA domain (Cdc48 subfamily) JYB86_07490 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JYB86_07505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JYB86_07505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JYB86_07510 PF00440 Bacterial regulatory proteins, tetR family JYB86_07520 PF00285 Citrate synthase, C-terminal domain JYB86_07530 PF00994 Probable molybdopterin binding domain JYB86_07530 PF02464 Competence-damaged protein JYB86_07565 PF01292 Prokaryotic cytochrome b561 JYB86_07570 PF12832 MFS_1 like family JYB86_07575 PF01425 Amidase JYB86_07585 PF00289 Biotin carboxylase, N-terminal domain JYB86_07585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JYB86_07585 PF02785 Biotin carboxylase C-terminal domain JYB86_07590 PF00364 Biotin-requiring enzyme JYB86_07595 PF01220 Dehydroquinase class II JYB86_07610 PF04143 Sulphur transport JYB86_07620 PF00753 Metallo-beta-lactamase superfamily JYB86_07625 PF12697 Alpha/beta hydrolase family JYB86_07645 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JYB86_07655 PF07724 AAA domain (Cdc48 subfamily) JYB86_07655 PF17871 AAA lid domain JYB86_07655 PF10431 C-terminal, D2-small domain, of ClpB protein JYB86_07655 PF00004 ATPase family associated with various cellular activities (AAA) JYB86_07670 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JYB86_07685 PF05947 Type VI secretion system, TssF JYB86_07700 PF06744 Type VI secretion protein IcmF C-terminal JYB86_07700 PF14331 ImcF-related N-terminal domain JYB86_07700 PF06761 Intracellular multiplication and human macrophage-killing JYB86_07745 PF07715 TonB-dependent Receptor Plug Domain JYB86_07745 PF00593 TonB dependent receptor JYB86_07750 PF01925 Sulfite exporter TauE/SafE JYB86_07755 PF01613 Flavin reductase like domain JYB86_07760 PF01717 Cobalamin-independent synthase, Catalytic domain JYB86_07770 PF00223 Photosystem I psaA/psaB protein JYB86_07770 PF00691 OmpA family JYB86_07785 PF13098 Thioredoxin-like domain JYB86_07790 PF08534 Redoxin JYB86_07795 PF11412 Disulphide bond corrector protein DsbC JYB86_07795 PF02683 Cytochrome C biogenesis protein transmembrane region JYB86_07800 PF00072 Response regulator receiver domain JYB86_07800 PF00486 Transcriptional regulatory protein, C terminal JYB86_07805 PF08521 Two-component sensor kinase N-terminal JYB86_07805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_07805 PF00512 His Kinase A (phospho-acceptor) domain JYB86_07815 PF05199 GMC oxidoreductase JYB86_07815 PF00732 GMC oxidoreductase JYB86_07820 PF00171 Aldehyde dehydrogenase family JYB86_07825 PF00440 Bacterial regulatory proteins, tetR family JYB86_07825 PF13977 BetI-type transcriptional repressor, C-terminal JYB86_07830 PF02028 BCCT, betaine/carnitine/choline family transporter JYB86_07860 PF13533 Biotin-lipoyl like JYB86_07890 PF00501 AMP-binding enzyme JYB86_07890 PF13193 AMP-binding enzyme C-terminal domain JYB86_07895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_07895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_07895 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_07900 PF00378 Enoyl-CoA hydratase/isomerase JYB86_07910 PF01047 MarR family JYB86_07915 PF07690 Major Facilitator Superfamily JYB86_07920 PF02515 CoA-transferase family III JYB86_07930 PF00501 AMP-binding enzyme JYB86_07930 PF13193 AMP-binding enzyme C-terminal domain JYB86_07940 PF00743 Flavin-binding monooxygenase-like JYB86_07945 PF12697 Alpha/beta hydrolase family JYB86_07945 PF08241 Methyltransferase domain JYB86_07950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_07950 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_07950 PF12806 Acetyl-CoA dehydrogenase C-terminal like JYB86_07950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_07955 PF03060 Nitronate monooxygenase JYB86_07960 PF00378 Enoyl-CoA hydratase/isomerase JYB86_07965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JYB86_07970 PF00596 Class II Aldolase and Adducin N-terminal domain JYB86_07980 PF02803 Thiolase, C-terminal domain JYB86_07980 PF00108 Thiolase, N-terminal domain JYB86_07985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JYB86_07985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JYB86_07985 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain JYB86_07990 PF00378 Enoyl-CoA hydratase/isomerase JYB86_07995 PF07690 Major Facilitator Superfamily JYB86_08005 PF07690 Major Facilitator Superfamily JYB86_08010 PF01144 Coenzyme A transferase JYB86_08015 PF01144 Coenzyme A transferase JYB86_08020 PF07690 Major Facilitator Superfamily JYB86_08025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_08025 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_08025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_08030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_08030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_08030 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_08035 PF09339 IclR helix-turn-helix domain JYB86_08045 PF03793 PASTA domain JYB86_08045 PF00069 Protein kinase domain JYB86_08050 PF01226 Formate/nitrite transporter JYB86_08065 PF07690 Major Facilitator Superfamily JYB86_08090 PF00487 Fatty acid desaturase JYB86_08105 PF07690 Major Facilitator Superfamily JYB86_08110 PF03466 LysR substrate binding domain JYB86_08110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_08115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JYB86_08115 PF13378 Enolase C-terminal domain-like JYB86_08120 PF02426 Muconolactone delta-isomerase JYB86_08125 PF00775 Dioxygenase JYB86_08125 PF04444 Catechol dioxygenase N terminus JYB86_08130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JYB86_08130 PF00355 Rieske [2Fe-2S] domain JYB86_08135 PF00866 Ring hydroxylating beta subunit JYB86_08140 PF00970 Oxidoreductase FAD-binding domain JYB86_08140 PF00175 Oxidoreductase NAD-binding domain JYB86_08140 PF00111 2Fe-2S iron-sulfur cluster binding domain JYB86_08145 PF00106 short chain dehydrogenase JYB86_08150 PF03594 Benzoate membrane transport protein JYB86_08155 PF01144 Coenzyme A transferase JYB86_08160 PF01144 Coenzyme A transferase JYB86_08165 PF00108 Thiolase, N-terminal domain JYB86_08165 PF02803 Thiolase, C-terminal domain JYB86_08170 PF12146 Serine aminopeptidase, S33 JYB86_08180 PF15887 Putative zinc-binding metallo-peptidase JYB86_08180 PF10005 zinc-ribbon domain JYB86_08185 PF00355 Rieske [2Fe-2S] domain JYB86_08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_08190 PF03466 LysR substrate binding domain JYB86_08195 PF03459 TOBE domain JYB86_08195 PF00005 ABC transporter JYB86_08200 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_08210 PF00994 Probable molybdopterin binding domain JYB86_08210 PF03454 MoeA C-terminal region (domain IV) JYB86_08210 PF03453 MoeA N-terminal region (domain I and II) JYB86_08215 PF00994 Probable molybdopterin binding domain JYB86_08215 PF01967 MoaC family JYB86_08220 PF02391 MoaE protein JYB86_08230 PF04055 Radical SAM superfamily JYB86_08230 PF06463 Molybdenum Cofactor Synthesis C JYB86_08235 PF12804 MobA-like NTP transferase domain JYB86_08240 PF00384 Molybdopterin oxidoreductase JYB86_08240 PF04324 BFD-like [2Fe-2S] binding domain JYB86_08240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JYB86_08240 PF01568 Molydopterin dinucleotide binding domain JYB86_08245 PF04324 BFD-like [2Fe-2S] binding domain JYB86_08245 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JYB86_08245 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JYB86_08245 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_08245 PF18267 Rubredoxin NAD+ reductase C-terminal domain JYB86_08250 PF18267 Rubredoxin NAD+ reductase C-terminal domain JYB86_08250 PF04324 BFD-like [2Fe-2S] binding domain JYB86_08250 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JYB86_08250 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_08250 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JYB86_08255 PF07690 Major Facilitator Superfamily JYB86_08265 PF00005 ABC transporter JYB86_08270 PF00291 Pyridoxal-phosphate dependent enzyme JYB86_08275 PF01553 Acyltransferase JYB86_08285 PF00916 Sulfate permease family JYB86_08285 PF01740 STAS domain JYB86_08290 PF00375 Sodium:dicarboxylate symporter family JYB86_08300 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JYB86_08305 PF00924 Mechanosensitive ion channel JYB86_08320 PF00664 ABC transporter transmembrane region JYB86_08320 PF00005 ABC transporter JYB86_08330 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JYB86_08330 PF12833 Helix-turn-helix domain JYB86_08335 PF01597 Glycine cleavage H-protein JYB86_08340 PF07690 Major Facilitator Superfamily JYB86_08345 PF00437 Type II/IV secretion system protein JYB86_08350 PF00793 DAHP synthetase I family JYB86_08355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JYB86_08360 PF00324 Amino acid permease JYB86_08365 PF00155 Aminotransferase class I and II JYB86_08370 PF00563 EAL domain JYB86_08370 PF00990 Diguanylate cyclase, GGDEF domain JYB86_08370 PF03707 Bacterial signalling protein N terminal repeat JYB86_08375 PF08240 Alcohol dehydrogenase GroES-like domain JYB86_08375 PF00107 Zinc-binding dehydrogenase JYB86_08380 PF13091 PLD-like domain JYB86_08405 PF00106 short chain dehydrogenase JYB86_08420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_08420 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_08420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_08425 PF03466 LysR substrate binding domain JYB86_08425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_08430 PF00565 Staphylococcal nuclease homologue JYB86_08440 PF02322 Cytochrome bd terminal oxidase subunit II JYB86_08445 PF01654 Cytochrome bd terminal oxidase subunit I JYB86_08450 PF01047 MarR family JYB86_08455 PF07690 Major Facilitator Superfamily JYB86_08460 PF12833 Helix-turn-helix domain JYB86_08460 PF06719 AraC-type transcriptional regulator N-terminus JYB86_08465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_08465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_08465 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_08465 PF12806 Acetyl-CoA dehydrogenase C-terminal like JYB86_08495 PF10415 Fumarase C C-terminus JYB86_08495 PF00206 Lyase JYB86_08500 PF16363 GDP-mannose 4,6 dehydratase JYB86_08505 PF02635 DsrE/DsrF-like family JYB86_08525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_08525 PF03466 LysR substrate binding domain JYB86_08530 PF03788 LrgA family JYB86_08535 PF04172 LrgB-like family JYB86_08540 PF04073 Aminoacyl-tRNA editing domain JYB86_08545 PF02690 Na+/Pi-cotransporter JYB86_08555 PF01965 DJ-1/PfpI family JYB86_08600 PF02881 SRP54-type protein, helical bundle domain JYB86_08600 PF00448 SRP54-type protein, GTPase domain JYB86_08605 PF00675 Insulinase (Peptidase family M16) JYB86_08605 PF05193 Peptidase M16 inactive domain JYB86_08630 PF01743 Poly A polymerase head domain JYB86_08630 PF00571 CBS domain JYB86_08635 PF00291 Pyridoxal-phosphate dependent enzyme JYB86_08645 PF17862 AAA+ lid domain JYB86_08645 PF01434 Peptidase family M41 JYB86_08645 PF00004 ATPase family associated with various cellular activities (AAA) JYB86_08655 PF05166 YcgL domain JYB86_08660 PF01612 3'-5' exonuclease JYB86_08660 PF00570 HRDC domain JYB86_08665 PF02132 RecR protein JYB86_08665 PF13662 Toprim domain JYB86_08670 PF02575 YbaB/EbfC DNA-binding family JYB86_08675 PF01053 Cys/Met metabolism PLP-dependent enzyme JYB86_08685 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JYB86_08685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JYB86_08695 PF01230 HIT domain JYB86_08700 PF00267 Gram-negative porin JYB86_08720 PF05698 Bacterial trigger factor protein (TF) C-terminus JYB86_08725 PF00216 Bacterial DNA-binding protein JYB86_08740 PF02082 Transcriptional regulator JYB86_08745 PF00266 Aminotransferase class-V JYB86_08750 PF01592 NifU-like N terminal domain JYB86_08755 PF01521 Iron-sulphur cluster biosynthesis JYB86_08760 PF00226 DnaJ domain JYB86_08760 PF07743 HSCB C-terminal oligomerisation domain JYB86_08765 PF00012 Hsp70 protein JYB86_08770 PF00111 2Fe-2S iron-sulfur cluster binding domain JYB86_08775 PF00211 Adenylate and Guanylate cyclase catalytic domain JYB86_08785 PF02559 CarD-like/TRCF domain JYB86_08785 PF17757 UvrB interaction domain JYB86_08785 PF03461 TRCF domain JYB86_08785 PF00271 Helicase conserved C-terminal domain JYB86_08785 PF00270 DEAD/DEAH box helicase JYB86_08800 PF03737 Aldolase/RraA JYB86_08805 PF13460 NAD(P)H-binding JYB86_08810 PF01649 Ribosomal protein S20 JYB86_08815 PF00041 Fibronectin type III domain JYB86_08815 PF12561 ToxR activated gene A lipoprotein domain JYB86_08825 PF00459 Inositol monophosphatase family JYB86_08830 PF13419 Haloacid dehalogenase-like hydrolase JYB86_08835 PF01479 S4 domain JYB86_08840 PF00154 recA bacterial DNA recombination protein JYB86_08845 PF02631 RecX family JYB86_08860 PF01098 Cell cycle protein JYB86_08865 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JYB86_08870 PF04977 Septum formation initiator JYB86_08875 PF00113 Enolase, C-terminal TIM barrel domain JYB86_08875 PF03952 Enolase, N-terminal domain JYB86_08880 PF00793 DAHP synthetase I family JYB86_08885 PF00117 Glutamine amidotransferase class-I JYB86_08885 PF06418 CTP synthase N-terminus JYB86_08905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JYB86_08905 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_08925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_08925 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_08925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_08930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_08930 PF03466 LysR substrate binding domain JYB86_08935 PF02146 Sir2 family JYB86_08940 PF10415 Fumarase C C-terminus JYB86_08940 PF00206 Lyase JYB86_08945 PF00474 Sodium:solute symporter family JYB86_08955 PF01037 Lrp/AsnC ligand binding domain JYB86_08960 PF00171 Aldehyde dehydrogenase family JYB86_08960 PF01619 Proline dehydrogenase JYB86_08960 PF14850 DNA-binding domain of Proline dehydrogenase JYB86_08960 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JYB86_08965 PF05958 tRNA (Uracil-5-)-methyltransferase JYB86_08980 PF09992 Phosphodiester glycosidase JYB86_08990 PF00749 tRNA synthetases class I (E and Q), catalytic domain JYB86_08990 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JYB86_08995 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JYB86_09000 PF00149 Calcineurin-like phosphoesterase JYB86_09005 PF03328 HpcH/HpaI aldolase/citrate lyase family JYB86_09010 PF00881 Nitroreductase family JYB86_09025 PF01609 Transposase DDE domain JYB86_09025 PF13006 Insertion element 4 transposase N-terminal JYB86_09030 PF01116 Fructose-bisphosphate aldolase class-II JYB86_09040 PF00162 Phosphoglycerate kinase JYB86_09050 PF02545 Maf-like protein JYB86_09055 PF08007 Cupin superfamily protein JYB86_09060 PF07730 Histidine kinase JYB86_09060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_09065 PF00196 Bacterial regulatory proteins, luxR family JYB86_09065 PF00072 Response regulator receiver domain JYB86_09070 PF01645 Conserved region in glutamate synthase JYB86_09085 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JYB86_09085 PF01565 FAD binding domain JYB86_09090 PF01451 Low molecular weight phosphotyrosine protein phosphatase JYB86_09095 PF00465 Iron-containing alcohol dehydrogenase JYB86_09100 PF03061 Thioesterase superfamily JYB86_09105 PF12170 DNA polymerase III tau subunit V interacting with alpha JYB86_09105 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JYB86_09105 PF12169 DNA polymerase III subunits gamma and tau domain III JYB86_09115 PF00144 Beta-lactamase JYB86_09120 PF01575 MaoC like domain JYB86_09130 PF00108 Thiolase, N-terminal domain JYB86_09130 PF02803 Thiolase, C-terminal domain JYB86_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_09140 PF03466 LysR substrate binding domain JYB86_09145 PF00923 Transaldolase/Fructose-6-phosphate aldolase JYB86_09145 PF13202 EF hand JYB86_09150 PF01810 LysE type translocator JYB86_09155 PF03594 Benzoate membrane transport protein JYB86_09160 PF00135 Carboxylesterase family JYB86_09165 PF00582 Universal stress protein family JYB86_09170 PF00582 Universal stress protein family JYB86_09180 PF01433 Peptidase family M1 domain JYB86_09180 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JYB86_09180 PF11940 Domain of unknown function (DUF3458) Ig-like fold JYB86_09195 PF02110 Hydroxyethylthiazole kinase family JYB86_09210 PF03616 Sodium/glutamate symporter JYB86_09225 PF11791 Aconitate B N-terminal domain JYB86_09225 PF06434 Aconitate hydratase 2 N-terminus JYB86_09225 PF00330 Aconitase family (aconitate hydratase) JYB86_09245 PF07244 Surface antigen variable number repeat JYB86_09245 PF17243 POTRA domain TamA domain 1 JYB86_09245 PF01103 Surface antigen JYB86_09250 PF07690 Major Facilitator Superfamily JYB86_09255 PF03232 Ubiquinone biosynthesis protein COQ7 JYB86_09265 PF02152 Dihydroneopterin aldolase JYB86_09270 PF03109 ABC1 family JYB86_09275 PF00899 ThiF family JYB86_09290 PF00501 AMP-binding enzyme JYB86_09290 PF13193 AMP-binding enzyme C-terminal domain JYB86_09295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_09295 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_09295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_09300 PF00106 short chain dehydrogenase JYB86_09315 PF01062 Bestrophin, RFP-TM, chloride channel JYB86_09320 PF17827 PrmC N-terminal domain JYB86_09320 PF05175 Methyltransferase small domain JYB86_09325 PF03462 PCRF domain JYB86_09325 PF00472 RF-1 domain JYB86_09345 PF00296 Luciferase-like monooxygenase JYB86_09355 PF03618 Kinase/pyrophosphorylase JYB86_09360 PF00391 PEP-utilising enzyme, mobile domain JYB86_09360 PF02896 PEP-utilising enzyme, TIM barrel domain JYB86_09360 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JYB86_09370 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JYB86_09370 PF06481 COX Aromatic Rich Motif JYB86_09375 PF00115 Cytochrome C and Quinol oxidase polypeptide I JYB86_09380 PF00510 Cytochrome c oxidase subunit III JYB86_09385 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JYB86_09390 PF01040 UbiA prenyltransferase family JYB86_09395 PF01250 Ribosomal protein S6 JYB86_09400 PF01084 Ribosomal protein S18 JYB86_09405 PF01281 Ribosomal protein L9, N-terminal domain JYB86_09405 PF03948 Ribosomal protein L9, C-terminal domain JYB86_09410 PF00772 DnaB-like helicase N terminal domain JYB86_09410 PF03796 DnaB-like helicase C terminal domain JYB86_09415 PF00842 Alanine racemase, C-terminal domain JYB86_09415 PF01168 Alanine racemase, N-terminal domain JYB86_09430 PF08379 Bacterial transglutaminase-like N-terminal region JYB86_09430 PF01841 Transglutaminase-like superfamily JYB86_09440 PF14403 Circularly permuted ATP-grasp type 2 JYB86_09450 PF01134 Glucose inhibited division protein A JYB86_09450 PF13932 GidA associated domain JYB86_09480 PF02954 Bacterial regulatory protein, Fis family JYB86_09485 PF02142 MGS-like domain JYB86_09485 PF01808 AICARFT/IMPCHase bienzyme JYB86_09490 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JYB86_09490 PF02843 Phosphoribosylglycinamide synthetase, C domain JYB86_09490 PF02844 Phosphoribosylglycinamide synthetase, N domain JYB86_09500 PF03180 NLPA lipoprotein JYB86_09505 PF00005 ABC transporter JYB86_09505 PF09383 NIL domain JYB86_09510 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_09515 PF07733 Bacterial DNA polymerase III alpha NTPase domain JYB86_09515 PF01336 OB-fold nucleic acid binding domain JYB86_09515 PF02811 PHP domain JYB86_09515 PF14579 Helix-hairpin-helix motif JYB86_09515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JYB86_09520 PF00588 SpoU rRNA Methylase family JYB86_09525 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_09540 PF00465 Iron-containing alcohol dehydrogenase JYB86_09550 PF00488 MutS domain V JYB86_09550 PF05190 MutS family domain IV JYB86_09550 PF05192 MutS domain III JYB86_09550 PF05188 MutS domain II JYB86_09550 PF01624 MutS domain I JYB86_09555 PF11953 Domain of unknown function (DUF3470) JYB86_09555 PF00037 4Fe-4S binding domain JYB86_09565 PF01596 O-methyltransferase JYB86_09580 PF01205 Uncharacterized protein family UPF0029 JYB86_09585 PF00529 HlyD membrane-fusion protein of T1SS JYB86_09590 PF00005 ABC transporter JYB86_09590 PF03412 Peptidase C39 family JYB86_09590 PF00664 ABC transporter transmembrane region JYB86_09595 PF02321 Outer membrane efflux protein JYB86_09600 PF12399 Branched-chain amino acid ATP-binding cassette transporter JYB86_09600 PF00005 ABC transporter JYB86_09605 PF03968 OstA-like protein JYB86_09620 PF01380 SIS domain JYB86_09620 PF00571 CBS domain JYB86_09630 PF09190 DALR domain JYB86_09630 PF01406 tRNA synthetases class I (C) catalytic domain JYB86_09640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JYB86_09640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JYB86_09645 PF11898 Domain of unknown function (DUF3418) JYB86_09645 PF04408 Helicase associated domain (HA2) JYB86_09645 PF00271 Helicase conserved C-terminal domain JYB86_09645 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JYB86_09645 PF00270 DEAD/DEAH box helicase JYB86_09650 PF10417 C-terminal domain of 1-Cys peroxiredoxin JYB86_09650 PF00578 AhpC/TSA family JYB86_09660 PF15887 Putative zinc-binding metallo-peptidase JYB86_09660 PF10005 zinc-ribbon domain JYB86_09675 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_09675 PF13192 Thioredoxin domain JYB86_09685 PF13340 Putative transposase of IS4/5 family (DUF4096) JYB86_09690 PF04143 Sulphur transport JYB86_09715 PF03060 Nitronate monooxygenase JYB86_09725 PF01207 Dihydrouridine synthase (Dus) JYB86_09730 PF00313 'Cold-shock' DNA-binding domain JYB86_09745 PF07759 Protein of unknown function (DUF1615) JYB86_09770 PF07963 Prokaryotic N-terminal methylation motif JYB86_09770 PF11612 Type II secretion system (T2SS), protein J JYB86_09775 PF07963 Prokaryotic N-terminal methylation motif JYB86_09775 PF00114 Pilin (bacterial filament) JYB86_09780 PF00487 Fatty acid desaturase JYB86_09785 PF00175 Oxidoreductase NAD-binding domain JYB86_09785 PF00970 Oxidoreductase FAD-binding domain JYB86_09785 PF00111 2Fe-2S iron-sulfur cluster binding domain JYB86_09790 PF00440 Bacterial regulatory proteins, tetR family JYB86_09795 PF12697 Alpha/beta hydrolase family JYB86_09805 PF18339 RapA N-terminal Tudor like domain 1 JYB86_09805 PF12137 RNA polymerase recycling family C-terminal JYB86_09805 PF00176 SNF2 family N-terminal domain JYB86_09805 PF00271 Helicase conserved C-terminal domain JYB86_09805 PF18337 RapA N-terminal Tudor like domain JYB86_09810 PF00849 RNA pseudouridylate synthase JYB86_09825 PF03928 Haem-degrading JYB86_09830 PF00202 Aminotransferase class-III JYB86_09835 PF02581 Thiamine monophosphate synthase JYB86_09870 PF05193 Peptidase M16 inactive domain JYB86_09870 PF00675 Insulinase (Peptidase family M16) JYB86_09875 PF02567 Phenazine biosynthesis-like protein JYB86_09880 PF01613 Flavin reductase like domain JYB86_09890 PF01551 Peptidase family M23 JYB86_09900 PF00180 Isocitrate/isopropylmalate dehydrogenase JYB86_09905 PF00849 RNA pseudouridylate synthase JYB86_09920 PF07943 Penicillin-binding protein 5, C-terminal domain JYB86_09920 PF00768 D-alanyl-D-alanine carboxypeptidase JYB86_09925 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_09930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JYB86_09940 PF03883 Peroxide stress protein YaaA JYB86_09955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JYB86_09960 PF00155 Aminotransferase class I and II JYB86_09965 PF01817 Chorismate mutase type II JYB86_09965 PF01842 ACT domain JYB86_09965 PF00800 Prephenate dehydratase JYB86_09970 PF01965 DJ-1/PfpI family JYB86_09975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_09975 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_09975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_09980 PF00375 Sodium:dicarboxylate symporter family JYB86_09985 PF02885 Glycosyl transferase family, helical bundle domain JYB86_09985 PF00591 Glycosyl transferase family, a/b domain JYB86_09990 PF07023 Protein of unknown function (DUF1315) JYB86_09995 PF01513 ATP-NAD kinase JYB86_10000 PF14814 Bifunctional transglycosylase second domain JYB86_10000 PF00905 Penicillin binding protein transpeptidase domain JYB86_10000 PF00912 Transglycosylase JYB86_10010 PF00293 NUDIX domain JYB86_10020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_10020 PF00512 His Kinase A (phospho-acceptor) domain JYB86_10025 PF00486 Transcriptional regulatory protein, C terminal JYB86_10025 PF00072 Response regulator receiver domain JYB86_10035 PF00437 Type II/IV secretion system protein JYB86_10035 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JYB86_10045 PF01980 tRNA-methyltransferase O JYB86_10045 PF18389 TrmO C-terminal domain JYB86_10050 PF00970 Oxidoreductase FAD-binding domain JYB86_10050 PF00175 Oxidoreductase NAD-binding domain JYB86_10060 PF13411 MerR HTH family regulatory protein JYB86_10065 PF03358 NADPH-dependent FMN reductase JYB86_10070 PF01758 Sodium Bile acid symporter family JYB86_10080 PF01022 Bacterial regulatory protein, arsR family JYB86_10085 PF03960 ArsC family JYB86_10090 PF01136 Peptidase family U32 JYB86_10090 PF16325 Peptidase family U32 C-terminal domain JYB86_10095 PF00037 4Fe-4S binding domain JYB86_10100 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_10100 PF13192 Thioredoxin domain JYB86_10110 PF05816 Toxic anion resistance protein (TelA) JYB86_10120 PF14760 Rnk N-terminus JYB86_10120 PF01272 Transcription elongation factor, GreA/GreB, C-term JYB86_10125 PF00464 Serine hydroxymethyltransferase JYB86_10175 PF00005 ABC transporter JYB86_10180 PF01061 ABC-2 type transporter JYB86_10185 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JYB86_10185 PF14489 QueF-like protein JYB86_10195 PF13406 Transglycosylase SLT domain JYB86_10200 PF03330 Lytic transglycolase JYB86_10200 PF05036 Sporulation related domain JYB86_10215 PF00889 Elongation factor TS JYB86_10220 PF00318 Ribosomal protein S2 JYB86_10225 PF00557 Metallopeptidase family M24 JYB86_10240 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JYB86_10245 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_10245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JYB86_10250 PF04055 Radical SAM superfamily JYB86_10255 PF09317 Domain of unknown function (DUF1974) JYB86_10255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_10255 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_10255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_10280 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JYB86_10280 PF05221 S-adenosyl-L-homocysteine hydrolase JYB86_10285 PF02219 Methylenetetrahydrofolate reductase JYB86_10290 PF04452 RNA methyltransferase JYB86_10295 PF03707 Bacterial signalling protein N terminal repeat JYB86_10295 PF00990 Diguanylate cyclase, GGDEF domain JYB86_10295 PF00563 EAL domain JYB86_10300 PF01515 Phosphate acetyl/butaryl transferase JYB86_10300 PF00390 Malic enzyme, N-terminal domain JYB86_10300 PF03949 Malic enzyme, NAD binding domain JYB86_10305 PF01743 Poly A polymerase head domain JYB86_10305 PF12627 Probable RNA and SrmB- binding site of polymerase A JYB86_10310 PF00152 tRNA synthetases class II (D, K and N) JYB86_10315 PF11890 Domain of unknown function (DUF3410) JYB86_10315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JYB86_10315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JYB86_10325 PF00376 MerR family regulatory protein JYB86_10325 PF09278 MerR, DNA binding JYB86_10330 PF00403 Heavy-metal-associated domain JYB86_10340 PF00175 Oxidoreductase NAD-binding domain JYB86_10340 PF00111 2Fe-2S iron-sulfur cluster binding domain JYB86_10340 PF00970 Oxidoreductase FAD-binding domain JYB86_10350 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_10350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JYB86_10360 PF00764 Arginosuccinate synthase JYB86_10370 PF00990 Diguanylate cyclase, GGDEF domain JYB86_10370 PF00360 Phytochrome region JYB86_10370 PF00563 EAL domain JYB86_10370 PF01590 GAF domain JYB86_10375 PF01979 Amidohydrolase family JYB86_10380 PF00929 Exonuclease JYB86_10405 PF00324 Amino acid permease JYB86_10430 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_10430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JYB86_10435 PF00005 ABC transporter JYB86_10435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JYB86_10440 PF12911 N-terminal TM domain of oligopeptide transport permease C JYB86_10440 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_10445 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_10450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JYB86_10455 PF01464 Transglycosylase SLT domain JYB86_10455 PF01476 LysM domain JYB86_10460 PF00929 Exonuclease JYB86_10470 PF00293 NUDIX domain JYB86_10470 PF09297 NADH pyrophosphatase zinc ribbon domain JYB86_10475 PF00135 Carboxylesterase family JYB86_10480 PF04972 BON domain JYB86_10485 PF02021 Uncharacterised protein family UPF0102 JYB86_10490 PF04348 LppC putative lipoprotein JYB86_10495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JYB86_10505 PF01494 FAD binding domain JYB86_10510 PF01494 FAD binding domain JYB86_10520 PF05195 Aminopeptidase P, N-terminal domain JYB86_10520 PF00557 Metallopeptidase family M24 JYB86_10525 PF03695 Uncharacterised protein family (UPF0149) JYB86_10545 PF00072 Response regulator receiver domain JYB86_10545 PF00990 Diguanylate cyclase, GGDEF domain JYB86_10550 PF03466 LysR substrate binding domain JYB86_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_10555 PF09330 D-lactate dehydrogenase, membrane binding JYB86_10555 PF01565 FAD binding domain JYB86_10560 PF01070 FMN-dependent dehydrogenase JYB86_10565 PF00392 Bacterial regulatory proteins, gntR family JYB86_10565 PF07729 FCD domain JYB86_10570 PF02652 L-lactate permease JYB86_10585 PF01812 5-formyltetrahydrofolate cyclo-ligase family JYB86_10590 PF00004 ATPase family associated with various cellular activities (AAA) JYB86_10590 PF05362 Lon protease (S16) C-terminal proteolytic domain JYB86_10590 PF02190 ATP-dependent protease La (LON) substrate-binding domain JYB86_10595 PF04389 Peptidase family M28 JYB86_10600 PF02590 Predicted SPOUT methyltransferase JYB86_10605 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JYB86_10615 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JYB86_10615 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JYB86_10620 PF04060 Putative Fe-S cluster JYB86_10625 PF00730 HhH-GPD superfamily base excision DNA repair protein JYB86_10625 PF00633 Helix-hairpin-helix motif JYB86_10625 PF10576 Iron-sulfur binding domain of endonuclease III JYB86_10635 PF05191 Adenylate kinase, active site lid JYB86_10650 PF00905 Penicillin binding protein transpeptidase domain JYB86_10650 PF03717 Penicillin-binding Protein dimerisation domain JYB86_10665 PF02492 CobW/HypB/UreG, nucleotide-binding domain JYB86_10670 PF01730 UreF JYB86_10675 PF05194 UreE urease accessory protein, C-terminal domain JYB86_10675 PF02814 UreE urease accessory protein, N-terminal domain JYB86_10690 PF00547 Urease, gamma subunit JYB86_10695 PF01774 UreD urease accessory protein JYB86_10715 PF04170 NlpE N-terminal domain JYB86_10715 PF17185 NlpE C-terminal OB domain JYB86_10725 PF00463 Isocitrate lyase family JYB86_10730 PF03466 LysR substrate binding domain JYB86_10730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_10735 PF03471 Transporter associated domain JYB86_10735 PF01595 Cyclin M transmembrane N-terminal domain JYB86_10735 PF00571 CBS domain JYB86_10755 PF00109 Beta-ketoacyl synthase, N-terminal domain JYB86_10755 PF00698 Acyl transferase domain JYB86_10755 PF08240 Alcohol dehydrogenase GroES-like domain JYB86_10755 PF00107 Zinc-binding dehydrogenase JYB86_10755 PF16197 Ketoacyl-synthetase C-terminal extension JYB86_10755 PF02801 Beta-ketoacyl synthase, C-terminal domain JYB86_10755 PF08659 KR domain JYB86_10755 PF00550 Phosphopantetheine attachment site JYB86_10755 PF14765 Polyketide synthase dehydratase JYB86_10760 PF00085 Thioredoxin JYB86_10770 PF00009 Elongation factor Tu GTP binding domain JYB86_10775 PF01507 Phosphoadenosine phosphosulfate reductase family JYB86_10785 PF00152 tRNA synthetases class II (D, K and N) JYB86_10785 PF01336 OB-fold nucleic acid binding domain JYB86_10795 PF00156 Phosphoribosyl transferase domain JYB86_10800 PF00301 Rubredoxin JYB86_10805 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_10805 PF18113 Rubredoxin binding C-terminal domain JYB86_10810 PF00561 alpha/beta hydrolase fold JYB86_10815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_10815 PF03466 LysR substrate binding domain JYB86_10820 PF17941 Polyphosphate kinase C-terminal domain 1 JYB86_10820 PF02503 Polyphosphate kinase middle domain JYB86_10820 PF13090 Polyphosphate kinase C-terminal domain 2 JYB86_10820 PF13089 Polyphosphate kinase N-terminal domain JYB86_10825 PF00912 Transglycosylase JYB86_10830 PF01694 Rhomboid family JYB86_10840 PF00005 ABC transporter JYB86_10845 PF13472 GDSL-like Lipase/Acylhydrolase family JYB86_10850 PF00484 Carbonic anhydrase JYB86_10855 PF00561 alpha/beta hydrolase fold JYB86_10865 PF00593 TonB dependent receptor JYB86_10865 PF07715 TonB-dependent Receptor Plug Domain JYB86_10870 PF01521 Iron-sulphur cluster biosynthesis JYB86_10870 PF01106 NifU-like domain JYB86_10890 PF01384 Phosphate transporter family JYB86_10895 PF02310 B12 binding domain JYB86_10895 PF02607 B12 binding domain JYB86_10895 PF02574 Homocysteine S-methyltransferase JYB86_10895 PF00809 Pterin binding enzyme JYB86_10895 PF02965 Vitamin B12 dependent methionine synthase, activation domain JYB86_10905 PF03050 Transposase IS66 family JYB86_10905 PF13817 IS66 C-terminal element JYB86_10905 PF13005 zinc-finger binding domain of transposase IS66 JYB86_10905 PF13007 Transposase C of IS166 homeodomain JYB86_10940 PF04480 Protein of unknown function (DUF559) JYB86_10950 PF02733 Dak1 domain JYB86_10955 PF04960 Glutaminase JYB86_10960 PF17151 Periplasmic sensor domain JYB86_10960 PF00990 Diguanylate cyclase, GGDEF domain JYB86_10965 PF00083 Sugar (and other) transporter JYB86_10965 PF07690 Major Facilitator Superfamily JYB86_10995 PF00990 Diguanylate cyclase, GGDEF domain JYB86_11000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JYB86_11005 PF07152 YaeQ protein JYB86_11010 PF07683 Cobalamin synthesis protein cobW C-terminal domain JYB86_11010 PF02492 CobW/HypB/UreG, nucleotide-binding domain JYB86_11020 PF01494 FAD binding domain JYB86_11030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_11030 PF03466 LysR substrate binding domain JYB86_11035 PF07690 Major Facilitator Superfamily JYB86_11040 PF00440 Bacterial regulatory proteins, tetR family JYB86_11040 PF16859 Tetracyclin repressor-like, C-terminal domain JYB86_11045 PF03061 Thioesterase superfamily JYB86_11055 PF01734 Patatin-like phospholipase JYB86_11060 PF02417 Chromate transporter JYB86_11065 PF01235 Sodium:alanine symporter family JYB86_11070 PF03616 Sodium/glutamate symporter JYB86_11080 PF00881 Nitroreductase family JYB86_11085 PF07690 Major Facilitator Superfamily JYB86_11090 PF12805 FUSC-like inner membrane protein yccS JYB86_11100 PF00175 Oxidoreductase NAD-binding domain JYB86_11100 PF00667 FAD binding domain JYB86_11100 PF00258 Flavodoxin JYB86_11155 PF03734 L,D-transpeptidase catalytic domain JYB86_11155 PF01476 LysM domain JYB86_11160 PF04304 Protein of unknown function (DUF454) JYB86_11170 PF08085 Entericidin EcnA/B family JYB86_11175 PF01546 Peptidase family M20/M25/M40 JYB86_11175 PF07687 Peptidase dimerisation domain JYB86_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_11185 PF01627 Hpt domain JYB86_11185 PF00072 Response regulator receiver domain JYB86_11185 PF02895 Signal transducing histidine kinase, homodimeric domain JYB86_11185 PF01584 CheW-like domain JYB86_11190 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JYB86_11190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JYB86_11195 PF01584 CheW-like domain JYB86_11200 PF00072 Response regulator receiver domain JYB86_11205 PF00072 Response regulator receiver domain JYB86_11215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JYB86_11220 PF00873 AcrB/AcrD/AcrF family JYB86_11225 PF04073 Aminoacyl-tRNA editing domain JYB86_11225 PF03129 Anticodon binding domain JYB86_11225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JYB86_11250 PF00692 dUTPase JYB86_11260 PF16868 NMT1-like family JYB86_11275 PF10609 NUBPL iron-transfer P-loop NTPase JYB86_11280 PF01588 Putative tRNA binding domain JYB86_11280 PF09334 tRNA synthetases class I (M) JYB86_11305 PF00909 Ammonium Transporter Family JYB86_11320 PF00291 Pyridoxal-phosphate dependent enzyme JYB86_11350 PF05552 Conserved TM helix JYB86_11370 PF00175 Oxidoreductase NAD-binding domain JYB86_11370 PF00970 Oxidoreductase FAD-binding domain JYB86_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JYB86_11375 PF03466 LysR substrate binding domain JYB86_11385 PF00313 'Cold-shock' DNA-binding domain JYB86_11395 PF00361 Proton-conducting membrane transporter JYB86_11400 PF00361 Proton-conducting membrane transporter JYB86_11405 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JYB86_11405 PF00361 Proton-conducting membrane transporter JYB86_11410 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JYB86_11415 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JYB86_11420 PF12838 4Fe-4S dicluster domain JYB86_11425 PF00146 NADH dehydrogenase JYB86_11430 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JYB86_11430 PF00384 Molybdopterin oxidoreductase JYB86_11430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JYB86_11435 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JYB86_11435 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JYB86_11435 PF10531 SLBB domain JYB86_11445 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JYB86_11445 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JYB86_11450 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JYB86_11455 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JYB86_11465 PF00348 Polyprenyl synthetase JYB86_11470 PF04303 PrpF protein JYB86_11475 PF00324 Amino acid permease JYB86_11495 PF14497 Glutathione S-transferase, C-terminal domain JYB86_11495 PF02798 Glutathione S-transferase, N-terminal domain JYB86_11505 PF01144 Coenzyme A transferase JYB86_11510 PF01144 Coenzyme A transferase JYB86_11530 PF01507 Phosphoadenosine phosphosulfate reductase family JYB86_11535 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JYB86_11535 PF06974 Protein of unknown function (DUF1298) JYB86_11545 PF00575 S1 RNA binding domain JYB86_11545 PF10150 Ribonuclease E/G family JYB86_11550 PF02545 Maf-like protein JYB86_11555 PF04093 rod shape-determining protein MreD JYB86_11560 PF04085 rod shape-determining protein MreC JYB86_11570 PF02686 Glu-tRNAGln amidotransferase C subunit JYB86_11575 PF01425 Amidase JYB86_11580 PF02637 GatB domain JYB86_11580 PF02934 GatB/GatE catalytic domain JYB86_11615 PF05992 SbmA/BacA-like family JYB86_11630 PF00535 Glycosyl transferase family 2 JYB86_11635 PF01522 Polysaccharide deacetylase JYB86_11635 PF14883 Hypothetical glycosyl hydrolase family 13 JYB86_11640 PF09313 Domain of unknown function (DUF1971) JYB86_11640 PF03848 Tellurite resistance protein TehB JYB86_11665 PF13784 Fic/DOC family N-terminal JYB86_11665 PF02661 Fic/DOC family JYB86_11685 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JYB86_11685 PF18766 SWI2/SNF2 ATPase JYB86_11685 PF12008 Type I restriction and modification enzyme - subunit R C terminal JYB86_11705 PF12161 HsdM N-terminal domain JYB86_11705 PF02384 N-6 DNA Methylase JYB86_11715 PF03848 Tellurite resistance protein TehB JYB86_11715 PF09313 Domain of unknown function (DUF1971) JYB86_11730 PF13359 DDE superfamily endonuclease JYB86_11730 PF13613 Helix-turn-helix of DDE superfamily endonuclease JYB86_11775 PF00589 Phage integrase family JYB86_11775 PF13356 Arm DNA-binding domain JYB86_11785 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JYB86_11785 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JYB86_11790 PF03061 Thioesterase superfamily JYB86_11795 PF00490 Delta-aminolevulinic acid dehydratase JYB86_11800 PF01266 FAD dependent oxidoreductase JYB86_11810 PF12320 Type 5 capsule protein repressor C-terminal domain JYB86_11810 PF00149 Calcineurin-like phosphoesterase JYB86_11825 PF01168 Alanine racemase, N-terminal domain JYB86_11830 PF00437 Type II/IV secretion system protein JYB86_11835 PF00437 Type II/IV secretion system protein JYB86_11840 PF01475 Ferric uptake regulator family JYB86_11845 PF04355 SmpA / OmlA family JYB86_11850 PF13006 Insertion element 4 transposase N-terminal JYB86_11850 PF01609 Transposase DDE domain JYB86_11855 PF03658 RnfH family Ubiquitin JYB86_11865 PF01814 Hemerythrin HHE cation binding domain JYB86_11870 PF13230 Glutamine amidotransferases class-II JYB86_11880 PF13007 Transposase C of IS166 homeodomain JYB86_11880 PF13817 IS66 C-terminal element JYB86_11880 PF13005 zinc-finger binding domain of transposase IS66 JYB86_11880 PF03050 Transposase IS66 family JYB86_11900 PF00696 Amino acid kinase family JYB86_11905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JYB86_11905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JYB86_11905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JYB86_11905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JYB86_11910 PF00692 dUTPase JYB86_11915 PF13361 UvrD-like helicase C-terminal domain JYB86_11915 PF00580 UvrD/REP helicase N-terminal domain JYB86_11920 PF13488 Glycine zipper JYB86_11920 PF00691 OmpA family JYB86_11925 PF01553 Acyltransferase JYB86_11935 PF03775 Septum formation inhibitor MinC, C-terminal domain JYB86_11940 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JYB86_11945 PF03776 Septum formation topological specificity factor MinE JYB86_11955 PF17854 FtsK alpha domain JYB86_11955 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JYB86_11955 PF01580 FtsK/SpoIIIE family JYB86_11955 PF09397 Ftsk gamma domain JYB86_11960 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_11965 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JYB86_11970 PF04376 Arginine-tRNA-protein transferase, N terminus JYB86_11970 PF04377 Arginine-tRNA-protein transferase, C terminus JYB86_11975 PF00583 Acetyltransferase (GNAT) family JYB86_11985 PF03144 Elongation factor Tu domain 2 JYB86_11985 PF03143 Elongation factor Tu C-terminal domain JYB86_11985 PF00009 Elongation factor Tu GTP binding domain JYB86_11990 PF14492 Elongation Factor G, domain II JYB86_11990 PF03144 Elongation factor Tu domain 2 JYB86_11990 PF00009 Elongation factor Tu GTP binding domain JYB86_11990 PF00679 Elongation factor G C-terminus JYB86_11990 PF03764 Elongation factor G, domain IV JYB86_11995 PF00177 Ribosomal protein S7p/S5e JYB86_12000 PF00164 Ribosomal protein S12/S23 JYB86_12010 PF02801 Beta-ketoacyl synthase, C-terminal domain JYB86_12010 PF00109 Beta-ketoacyl synthase, N-terminal domain JYB86_12015 PF03653 Uncharacterised protein family (UPF0093) JYB86_12020 PF00324 Amino acid permease JYB86_12025 PF01042 Endoribonuclease L-PSP JYB86_12030 PF00842 Alanine racemase, C-terminal domain JYB86_12030 PF01168 Alanine racemase, N-terminal domain JYB86_12035 PF01266 FAD dependent oxidoreductase JYB86_12040 PF01037 Lrp/AsnC ligand binding domain JYB86_12045 PF13419 Haloacid dehalogenase-like hydrolase JYB86_12050 PF08543 Phosphomethylpyrimidine kinase JYB86_12050 PF03070 TENA/THI-4/PQQC family JYB86_12050 PF02581 Thiamine monophosphate synthase JYB86_12060 PF08378 Nuclease-related domain JYB86_12065 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JYB86_12065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JYB86_12070 PF00893 Small Multidrug Resistance protein JYB86_12080 PF07732 Multicopper oxidase JYB86_12080 PF07731 Multicopper oxidase JYB86_12080 PF00394 Multicopper oxidase JYB86_12090 PF00834 Ribulose-phosphate 3 epimerase family JYB86_12105 PF05987 Bacterial protein of unknown function (DUF898) JYB86_12110 PF00756 Putative esterase JYB86_12120 PF04445 Putative SAM-dependent methyltransferase JYB86_12125 PF02673 Bacitracin resistance protein BacA JYB86_12130 PF00814 Glycoprotease family JYB86_12135 PF00132 Bacterial transferase hexapeptide (six repeats) JYB86_12140 PF00293 NUDIX domain JYB86_12180 PF04715 Anthranilate synthase component I, N terminal region JYB86_12180 PF00425 chorismate binding enzyme JYB86_12185 PF00155 Aminotransferase class I and II JYB86_12190 PF00815 Histidinol dehydrogenase JYB86_12195 PF01634 ATP phosphoribosyltransferase JYB86_12200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JYB86_12205 PF01722 BolA-like protein JYB86_12210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JYB86_12215 PF00309 Sigma-54 factor, Activator interacting domain (AID) JYB86_12215 PF04963 Sigma-54 factor, core binding domain JYB86_12215 PF04552 Sigma-54, DNA binding domain JYB86_12285 PF02445 Quinolinate synthetase A protein JYB86_12290 PF01960 ArgJ family JYB86_12300 PF02810 SEC-C motif JYB86_12300 PF07517 SecA DEAD-like domain JYB86_12300 PF01043 SecA preprotein cross-linking domain JYB86_12300 PF07516 SecA Wing and Scaffold domain JYB86_12305 PF00578 AhpC/TSA family JYB86_12305 PF10417 C-terminal domain of 1-Cys peroxiredoxin JYB86_12320 PF02875 Mur ligase family, glutamate ligase domain JYB86_12320 PF08245 Mur ligase middle domain JYB86_12325 PF01039 Carboxyl transferase domain JYB86_12330 PF00290 Tryptophan synthase alpha chain JYB86_12360 PF00291 Pyridoxal-phosphate dependent enzyme JYB86_12365 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JYB86_12370 PF07715 TonB-dependent Receptor Plug Domain JYB86_12370 PF00593 TonB dependent receptor JYB86_12375 PF01923 Cobalamin adenosyltransferase JYB86_12395 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JYB86_12400 PF04237 YjbR JYB86_12405 PF00486 Transcriptional regulatory protein, C terminal JYB86_12405 PF00072 Response regulator receiver domain JYB86_12410 PF00672 HAMP domain JYB86_12410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_12410 PF00512 His Kinase A (phospho-acceptor) domain JYB86_12420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_12420 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_12420 PF12806 Acetyl-CoA dehydrogenase C-terminal like JYB86_12420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_12425 PF12806 Acetyl-CoA dehydrogenase C-terminal like JYB86_12425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_12425 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_12425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_12430 PF06146 Phosphate-starvation-inducible E JYB86_12450 PF07715 TonB-dependent Receptor Plug Domain JYB86_12450 PF00593 TonB dependent receptor JYB86_12465 PF00152 tRNA synthetases class II (D, K and N) JYB86_12465 PF02938 GAD domain JYB86_12465 PF01336 OB-fold nucleic acid binding domain JYB86_12480 PF00534 Glycosyl transferases group 1 JYB86_12480 PF13439 Glycosyltransferase Family 4 JYB86_12485 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) JYB86_12495 PF00535 Glycosyl transferase family 2 JYB86_12505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JYB86_12505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JYB86_12510 PF01063 Amino-transferase class IV JYB86_12515 PF08335 GlnD PII-uridylyltransferase JYB86_12515 PF03710 Glutamate-ammonia ligase adenylyltransferase JYB86_12520 PF00512 His Kinase A (phospho-acceptor) domain JYB86_12520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_12520 PF00989 PAS fold JYB86_12520 PF13188 PAS domain JYB86_12520 PF13426 PAS domain JYB86_12525 PF03971 Monomeric isocitrate dehydrogenase JYB86_12535 PF02547 Queuosine biosynthesis protein JYB86_12545 PF04011 LemA family JYB86_12550 PF00990 Diguanylate cyclase, GGDEF domain JYB86_12550 PF00563 EAL domain JYB86_12550 PF00360 Phytochrome region JYB86_12550 PF01590 GAF domain JYB86_12555 PF01702 Queuine tRNA-ribosyltransferase JYB86_12560 PF02699 Preprotein translocase subunit JYB86_12565 PF07549 SecD/SecF GG Motif JYB86_12565 PF13721 SecD export protein N-terminal TM region JYB86_12565 PF02355 Protein export membrane protein JYB86_12570 PF02355 Protein export membrane protein JYB86_12570 PF07549 SecD/SecF GG Motif JYB86_12580 PF02824 TGS domain JYB86_12580 PF13291 ACT domain JYB86_12580 PF04607 Region found in RelA / SpoT proteins JYB86_12585 PF05958 tRNA (Uracil-5-)-methyltransferase JYB86_12595 PF00291 Pyridoxal-phosphate dependent enzyme JYB86_12600 PF00672 HAMP domain JYB86_12600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_12600 PF00512 His Kinase A (phospho-acceptor) domain JYB86_12600 PF01627 Hpt domain JYB86_12600 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JYB86_12600 PF00072 Response regulator receiver domain JYB86_12605 PF00378 Enoyl-CoA hydratase/isomerase JYB86_12610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JYB86_12610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JYB86_12615 PF01261 Xylose isomerase-like TIM barrel JYB86_12625 PF02233 NAD(P) transhydrogenase beta subunit JYB86_12630 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JYB86_12635 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JYB86_12635 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JYB86_12640 PF00892 EamA-like transporter family JYB86_12645 PF07690 Major Facilitator Superfamily JYB86_12665 PF00994 Probable molybdopterin binding domain JYB86_12665 PF18146 Damage-inducible protein CinA KH domain JYB86_12665 PF02464 Competence-damaged protein JYB86_12675 PF00199 Catalase JYB86_12675 PF06628 Catalase-related immune-responsive JYB86_12675 PF18011 C-terminal domain found in long catalases JYB86_12690 PF01207 Dihydrouridine synthase (Dus) JYB86_12695 PF13006 Insertion element 4 transposase N-terminal JYB86_12695 PF01609 Transposase DDE domain JYB86_12700 PF00899 ThiF family JYB86_12705 PF01026 TatD related DNase JYB86_12720 PF16658 Class II release factor RF3, C-terminal domain JYB86_12720 PF03144 Elongation factor Tu domain 2 JYB86_12720 PF00009 Elongation factor Tu GTP binding domain JYB86_12730 PF00563 EAL domain JYB86_12730 PF00990 Diguanylate cyclase, GGDEF domain JYB86_12730 PF03707 Bacterial signalling protein N terminal repeat JYB86_12735 PF11818 C-terminal domain of tail specific protease (DUF3340) JYB86_12735 PF17804 Tail specific protease N-terminal domain JYB86_12735 PF03572 Peptidase family S41 JYB86_12735 PF00595 PDZ domain JYB86_12740 PF00933 Glycosyl hydrolase family 3 N terminal domain JYB86_12755 PF00171 Aldehyde dehydrogenase family JYB86_12765 PF00871 Acetokinase family JYB86_12770 PF01515 Phosphate acetyl/butaryl transferase JYB86_12770 PF07085 DRTGG domain JYB86_12780 PF05683 Fumarase C-terminus JYB86_12780 PF05681 Fumarate hydratase (Fumerase) JYB86_12790 PF07724 AAA domain (Cdc48 subfamily) JYB86_12790 PF10431 C-terminal, D2-small domain, of ClpB protein JYB86_12790 PF06689 ClpX C4-type zinc finger JYB86_12795 PF00574 Clp protease JYB86_12800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JYB86_12800 PF05698 Bacterial trigger factor protein (TF) C-terminus JYB86_12800 PF05697 Bacterial trigger factor protein (TF) JYB86_12805 PF00593 TonB dependent receptor JYB86_12805 PF07715 TonB-dependent Receptor Plug Domain JYB86_12810 PF00593 TonB dependent receptor JYB86_12810 PF07715 TonB-dependent Receptor Plug Domain JYB86_12815 PF18331 PKHD-type hydroxylase C-terminal domain JYB86_12815 PF13640 2OG-Fe(II) oxygenase superfamily JYB86_12820 PF01070 FMN-dependent dehydrogenase JYB86_12825 PF00682 HMGL-like JYB86_12825 PF08502 LeuA allosteric (dimerisation) domain JYB86_12830 PF00561 alpha/beta hydrolase fold JYB86_12835 PF00561 alpha/beta hydrolase fold JYB86_12835 PF07021 Methionine biosynthesis protein MetW JYB86_12845 PF01725 Ham1 family JYB86_12855 PF02416 mttA/Hcf106 family JYB86_12860 PF02416 mttA/Hcf106 family JYB86_12865 PF00902 Sec-independent protein translocase protein (TatC) JYB86_12880 PF01790 Prolipoprotein diacylglyceryl transferase JYB86_12895 PF08212 Lipocalin-like domain JYB86_12900 PF00303 Thymidylate synthase JYB86_12905 PF00186 Dihydrofolate reductase JYB86_12920 PF01625 Peptide methionine sulfoxide reductase JYB86_12925 PF01557 Fumarylacetoacetate (FAA) hydrolase family JYB86_12960 PF08461 Ribonuclease R winged-helix domain JYB86_12960 PF00773 RNB domain JYB86_12960 PF08206 Ribonuclease B OB domain JYB86_12960 PF00575 S1 RNA binding domain JYB86_12960 PF17876 Cold shock domain JYB86_12970 PF01432 Peptidase family M3 JYB86_12975 PF09526 Probable metal-binding protein (DUF2387) JYB86_12985 PF00892 EamA-like transporter family JYB86_12990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JYB86_13015 PF03937 Flavinator of succinate dehydrogenase JYB86_13020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_13020 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_13020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_13025 PF00743 Flavin-binding monooxygenase-like JYB86_13030 PF01196 Ribosomal protein L17 JYB86_13035 PF01000 RNA polymerase Rpb3/RpoA insert domain JYB86_13035 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JYB86_13035 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JYB86_13040 PF01479 S4 domain JYB86_13040 PF00163 Ribosomal protein S4/S9 N-terminal domain JYB86_13045 PF00411 Ribosomal protein S11 JYB86_13050 PF00416 Ribosomal protein S13/S18 JYB86_13055 PF00444 Ribosomal protein L36 JYB86_13060 PF00344 SecY translocase JYB86_13065 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JYB86_13070 PF00327 Ribosomal protein L30p/L7e JYB86_13075 PF03719 Ribosomal protein S5, C-terminal domain JYB86_13075 PF00333 Ribosomal protein S5, N-terminal domain JYB86_13080 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JYB86_13085 PF00347 Ribosomal protein L6 JYB86_13090 PF00410 Ribosomal protein S8 JYB86_13095 PF00253 Ribosomal protein S14p/S29e JYB86_13100 PF00281 Ribosomal protein L5 JYB86_13100 PF00673 ribosomal L5P family C-terminus JYB86_13105 PF00467 KOW motif JYB86_13105 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JYB86_13110 PF00238 Ribosomal protein L14p/L23e JYB86_13115 PF00366 Ribosomal protein S17 JYB86_13120 PF00831 Ribosomal L29 protein JYB86_13125 PF00252 Ribosomal protein L16p/L10e JYB86_13130 PF00189 Ribosomal protein S3, C-terminal domain JYB86_13130 PF07650 KH domain JYB86_13135 PF00237 Ribosomal protein L22p/L17e JYB86_13140 PF00203 Ribosomal protein S19 JYB86_13145 PF00181 Ribosomal Proteins L2, RNA binding domain JYB86_13145 PF03947 Ribosomal Proteins L2, C-terminal domain JYB86_13150 PF00276 Ribosomal protein L23 JYB86_13155 PF00573 Ribosomal protein L4/L1 family JYB86_13160 PF00297 Ribosomal protein L3 JYB86_13165 PF00338 Ribosomal protein S10p/S20e JYB86_13170 PF00117 Glutamine amidotransferase class-I JYB86_13175 PF01053 Cys/Met metabolism PLP-dependent enzyme JYB86_13185 PF05872 Bacterial protein of unknown function (DUF853) JYB86_13190 PF00175 Oxidoreductase NAD-binding domain JYB86_13190 PF00042 Globin JYB86_13190 PF00970 Oxidoreductase FAD-binding domain JYB86_13195 PF02082 Transcriptional regulator JYB86_13200 PF01926 50S ribosome-binding GTPase JYB86_13215 PF00375 Sodium:dicarboxylate symporter family JYB86_13225 PF01553 Acyltransferase JYB86_13235 PF17191 RecG wedge domain JYB86_13235 PF00271 Helicase conserved C-terminal domain JYB86_13235 PF00270 DEAD/DEAH box helicase JYB86_13240 PF00156 Phosphoribosyl transferase domain JYB86_13250 PF03641 Possible lysine decarboxylase JYB86_13255 PF01544 CorA-like Mg2+ transporter protein JYB86_13265 PF05494 MlaC protein JYB86_13270 PF02470 MlaD protein JYB86_13275 PF02405 Permease MlaE JYB86_13280 PF00005 ABC transporter JYB86_13285 PF03880 DbpA RNA binding domain JYB86_13285 PF00270 DEAD/DEAH box helicase JYB86_13285 PF12343 Cold shock protein DEAD box A JYB86_13285 PF00271 Helicase conserved C-terminal domain JYB86_13290 PF00459 Inositol monophosphatase family JYB86_13295 PF02780 Transketolase, C-terminal domain JYB86_13295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JYB86_13295 PF02779 Transketolase, pyrimidine binding domain JYB86_13300 PF00925 GTP cyclohydrolase II JYB86_13305 PF04055 Radical SAM superfamily JYB86_13305 PF06969 HemN C-terminal domain JYB86_13310 PF01218 Coproporphyrinogen III oxidase JYB86_13320 PF01488 Shikimate / quinate 5-dehydrogenase JYB86_13320 PF08501 Shikimate dehydrogenase substrate binding domain JYB86_13320 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JYB86_13325 PF02770 Acyl-CoA dehydrogenase, middle domain JYB86_13325 PF12806 Acetyl-CoA dehydrogenase C-terminal like JYB86_13325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JYB86_13325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_13330 PF06969 HemN C-terminal domain JYB86_13330 PF04055 Radical SAM superfamily JYB86_13340 PF01554 MatE JYB86_13345 PF03109 ABC1 family JYB86_13350 PF01197 Ribosomal protein L31 JYB86_13355 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JYB86_13375 PF01209 ubiE/COQ5 methyltransferase family JYB86_13390 PF13614 AAA domain JYB86_13395 PF01594 AI-2E family transporter JYB86_13400 PF00080 Copper/zinc superoxide dismutase (SODC) JYB86_13405 PF12823 Domain of unknown function (DUF3817) JYB86_13410 PF07690 Major Facilitator Superfamily JYB86_13420 PF01565 FAD binding domain JYB86_13420 PF02913 FAD linked oxidases, C-terminal domain JYB86_13425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JYB86_13425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JYB86_13430 PF00892 EamA-like transporter family JYB86_13435 PF00892 EamA-like transporter family JYB86_13445 PF01925 Sulfite exporter TauE/SafE JYB86_13450 PF16198 tRNA pseudouridylate synthase B C-terminal domain JYB86_13450 PF01509 TruB family pseudouridylate synthase (N terminal domain) JYB86_13450 PF09157 Pseudouridine synthase II TruB, C-terminal JYB86_13455 PF03280 Proteobacterial lipase chaperone protein JYB86_13460 PF00561 alpha/beta hydrolase fold JYB86_13465 PF00561 alpha/beta hydrolase fold JYB86_13470 PF00561 alpha/beta hydrolase fold JYB86_13480 PF01245 Ribosomal protein L19 JYB86_13485 PF01746 tRNA (Guanine-1)-methyltransferase JYB86_13490 PF05239 PRC-barrel domain JYB86_13490 PF01782 RimM N-terminal domain JYB86_13495 PF00886 Ribosomal protein S16 JYB86_13505 PF07963 Prokaryotic N-terminal methylation motif JYB86_13505 PF00114 Pilin (bacterial filament) JYB86_13530 PF07963 Prokaryotic N-terminal methylation motif JYB86_13535 PF02401 LytB protein JYB86_13540 PF00625 Guanylate kinase JYB86_13545 PF01192 RNA polymerase Rpb6 JYB86_13550 PF13291 ACT domain JYB86_13550 PF02824 TGS domain JYB86_13550 PF04607 Region found in RelA / SpoT proteins JYB86_13555 PF01042 Endoribonuclease L-PSP JYB86_13560 PF04324 BFD-like [2Fe-2S] binding domain JYB86_13565 PF00210 Ferritin-like domain JYB86_13580 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JYB86_13585 PF04932 O-Antigen ligase JYB86_13585 PF15864 Protein glycosylation ligase JYB86_13585 PF11846 Virulence factor membrane-bound polymerase, C-terminal JYB86_13590 PF00114 Pilin (bacterial filament) JYB86_13590 PF07963 Prokaryotic N-terminal methylation motif JYB86_13605 PF04536 TPM domain JYB86_13610 PF04011 LemA family JYB86_13620 PF07992 Pyridine nucleotide-disulphide oxidoreductase JYB86_13620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JYB86_13625 PF01493 GXGXG motif JYB86_13625 PF00310 Glutamine amidotransferases class-II JYB86_13625 PF04898 Glutamate synthase central domain JYB86_13625 PF01645 Conserved region in glutamate synthase JYB86_13635 PF01761 3-dehydroquinate synthase JYB86_13640 PF01202 Shikimate kinase JYB86_13645 PF03958 Bacterial type II/III secretion system short domain JYB86_13645 PF11741 AMIN domain JYB86_13645 PF00263 Bacterial type II and III secretion system protein JYB86_13645 PF07660 Secretin and TonB N terminus short domain JYB86_13655 PF04350 Pilus assembly protein, PilO JYB86_13660 PF05137 Fimbrial assembly protein (PilN) JYB86_13665 PF11104 Type IV pilus assembly protein PilM; JYB86_13670 PF00912 Transglycosylase JYB86_13670 PF17092 Penicillin-binding protein OB-like domain JYB86_13670 PF00905 Penicillin binding protein transpeptidase domain JYB86_13675 PF01609 Transposase DDE domain JYB86_13675 PF13006 Insertion element 4 transposase N-terminal JYB86_13680 PF13847 Methyltransferase domain JYB86_13685 PF00953 Glycosyl transferase family 4 JYB86_13690 PF08245 Mur ligase middle domain JYB86_13690 PF02875 Mur ligase family, glutamate ligase domain JYB86_13690 PF01225 Mur ligase family, catalytic domain JYB86_13695 PF08245 Mur ligase middle domain JYB86_13695 PF02875 Mur ligase family, glutamate ligase domain JYB86_13695 PF01225 Mur ligase family, catalytic domain JYB86_13700 PF00905 Penicillin binding protein transpeptidase domain JYB86_13700 PF03717 Penicillin-binding Protein dimerisation domain JYB86_13710 PF01795 MraW methylase family JYB86_13725 PF00749 tRNA synthetases class I (E and Q), catalytic domain JYB86_13750 PF01797 Transposase IS200 like JYB86_13755 PF12848 ABC transporter JYB86_13755 PF00005 ABC transporter JYB86_13760 PF01053 Cys/Met metabolism PLP-dependent enzyme JYB86_13765 PF00106 short chain dehydrogenase JYB86_13775 PF01609 Transposase DDE domain JYB86_13775 PF13006 Insertion element 4 transposase N-terminal JYB86_13780 PF16921 Tex protein YqgF-like domain JYB86_13780 PF09371 Tex-like protein N-terminal domain JYB86_13780 PF00575 S1 RNA binding domain JYB86_13780 PF17674 HHH domain JYB86_13785 PF00486 Transcriptional regulatory protein, C terminal JYB86_13785 PF00072 Response regulator receiver domain JYB86_13790 PF00672 HAMP domain JYB86_13790 PF00512 His Kinase A (phospho-acceptor) domain JYB86_13790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_13795 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JYB86_13795 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JYB86_13820 PF00475 Imidazoleglycerol-phosphate dehydratase JYB86_13825 PF00117 Glutamine amidotransferase class-I JYB86_13840 PF00977 Histidine biosynthesis protein JYB86_13850 PF00892 EamA-like transporter family JYB86_13865 PF01636 Phosphotransferase enzyme family JYB86_13870 PF00977 Histidine biosynthesis protein JYB86_13880 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JYB86_13880 PF12833 Helix-turn-helix domain JYB86_13905 PF02705 K+ potassium transporter JYB86_13965 PF01593 Flavin containing amine oxidoreductase JYB86_13970 PF02678 Pirin JYB86_13970 PF05726 Pirin C-terminal cupin domain JYB86_13975 PF00578 AhpC/TSA family JYB86_13975 PF10417 C-terminal domain of 1-Cys peroxiredoxin JYB86_14000 PF04221 RelB antitoxin JYB86_14020 PF13817 IS66 C-terminal element JYB86_14020 PF13005 zinc-finger binding domain of transposase IS66 JYB86_14020 PF03050 Transposase IS66 family JYB86_14020 PF13007 Transposase C of IS166 homeodomain JYB86_14040 PF07732 Multicopper oxidase JYB86_14040 PF07731 Multicopper oxidase JYB86_14040 PF00394 Multicopper oxidase JYB86_14085 PF04221 RelB antitoxin JYB86_14105 PF02796 Helix-turn-helix domain of resolvase JYB86_14105 PF00239 Resolvase, N terminal domain JYB86_14110 PF01545 Cation efflux family JYB86_14115 PF00873 AcrB/AcrD/AcrF family JYB86_14150 PF13610 DDE domain JYB86_14155 PF13411 MerR HTH family regulatory protein JYB86_14160 PF01545 Cation efflux family JYB86_14165 PF13610 DDE domain JYB86_14170 PF00436 Single-strand binding protein family JYB86_14175 PF07690 Major Facilitator Superfamily JYB86_14185 PF03070 TENA/THI-4/PQQC family JYB86_14190 PF17760 UvrA interaction domain JYB86_14190 PF17755 UvrA DNA-binding domain JYB86_14190 PF00005 ABC transporter JYB86_14195 PF00990 Diguanylate cyclase, GGDEF domain JYB86_14205 PF02028 BCCT, betaine/carnitine/choline family transporter JYB86_14225 PF01609 Transposase DDE domain JYB86_14225 PF13006 Insertion element 4 transposase N-terminal JYB86_14230 PF00474 Sodium:solute symporter family JYB86_14235 PF04341 Protein of unknown function, DUF485 JYB86_14240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_14240 PF00512 His Kinase A (phospho-acceptor) domain JYB86_14240 PF09308 LuxQ, periplasmic JYB86_14240 PF00072 Response regulator receiver domain JYB86_14250 PF00196 Bacterial regulatory proteins, luxR family JYB86_14250 PF00072 Response regulator receiver domain JYB86_14255 PF03358 NADPH-dependent FMN reductase JYB86_14260 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JYB86_14260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JYB86_14265 PF00501 AMP-binding enzyme JYB86_14265 PF13193 AMP-binding enzyme C-terminal domain JYB86_14265 PF16177 Acetyl-coenzyme A synthetase N-terminus JYB86_14270 PF00924 Mechanosensitive ion channel JYB86_14275 PF04452 RNA methyltransferase JYB86_14280 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JYB86_14285 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JYB86_14310 PF02272 DHHA1 domain JYB86_14310 PF17768 RecJ OB domain JYB86_14310 PF01368 DHH family JYB86_14315 PF01243 Pyridoxamine 5'-phosphate oxidase JYB86_14315 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JYB86_14320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JYB86_14320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JYB86_14320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JYB86_14320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JYB86_14325 PF00478 IMP dehydrogenase / GMP reductase domain JYB86_14325 PF00571 CBS domain JYB86_14330 PF03692 Putative zinc- or iron-chelating domain JYB86_14335 PF01613 Flavin reductase like domain JYB86_14335 PF00258 Flavodoxin JYB86_14340 PF01169 Uncharacterized protein family UPF0016 JYB86_14345 PF02817 e3 binding domain JYB86_14345 PF00364 Biotin-requiring enzyme JYB86_14345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JYB86_14350 PF00456 Transketolase, thiamine diphosphate binding domain JYB86_14350 PF17831 Pyruvate dehydrogenase E1 component middle domain JYB86_14365 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JYB86_14370 PF12327 FtsZ family, C-terminal domain JYB86_14370 PF00091 Tubulin/FtsZ family, GTPase domain JYB86_14375 PF02491 SHS2 domain inserted in FTSA JYB86_14380 PF08478 POTRA domain, FtsQ-type JYB86_14380 PF03799 Cell division protein FtsQ JYB86_14385 PF07478 D-ala D-ala ligase C-terminus JYB86_14385 PF01820 D-ala D-ala ligase N-terminus JYB86_14390 PF01225 Mur ligase family, catalytic domain JYB86_14390 PF02875 Mur ligase family, glutamate ligase domain JYB86_14390 PF08245 Mur ligase middle domain JYB86_14395 PF03033 Glycosyltransferase family 28 N-terminal domain JYB86_14395 PF04101 Glycosyltransferase family 28 C-terminal domain JYB86_14400 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JYB86_14400 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JYB86_14410 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JYB86_14450 PF00156 Phosphoribosyl transferase domain JYB86_14455 PF03372 Endonuclease/Exonuclease/phosphatase family JYB86_14460 PF03960 ArsC family JYB86_14470 PF07859 alpha/beta hydrolase fold JYB86_14475 PF02525 Flavodoxin-like fold JYB86_14495 PF01797 Transposase IS200 like JYB86_14505 PF00043 Glutathione S-transferase, C-terminal domain JYB86_14505 PF02798 Glutathione S-transferase, N-terminal domain JYB86_14535 PF00576 HIUase/Transthyretin family JYB86_14550 PF00583 Acetyltransferase (GNAT) family JYB86_14555 PF01494 FAD binding domain JYB86_14560 PF03561 Allantoicase repeat JYB86_14565 PF04115 Ureidoglycolate lyase JYB86_14580 PF00939 Sodium:sulfate symporter transmembrane region JYB86_14595 PF00005 ABC transporter JYB86_14600 PF00005 ABC transporter JYB86_14600 PF12399 Branched-chain amino acid ATP-binding cassette transporter JYB86_14610 PF02653 Branched-chain amino acid transport system / permease component JYB86_14620 PF00204 DNA gyrase B JYB86_14620 PF00986 DNA gyrase B subunit, carboxyl terminus JYB86_14620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_14620 PF01751 Toprim domain JYB86_14625 PF05728 Uncharacterised protein family (UPF0227) JYB86_14635 PF02600 Disulfide bond formation protein DsbB JYB86_14640 PF04262 Glutamate-cysteine ligase JYB86_14655 PF04286 Protein of unknown function (DUF445) JYB86_14660 PF00155 Aminotransferase class I and II JYB86_14665 PF01554 MatE JYB86_14670 PF00106 short chain dehydrogenase JYB86_14680 PF00486 Transcriptional regulatory protein, C terminal JYB86_14680 PF00072 Response regulator receiver domain JYB86_14685 PF00989 PAS fold JYB86_14685 PF00512 His Kinase A (phospho-acceptor) domain JYB86_14685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JYB86_14685 PF11808 Phosphate regulon sensor protein PhoR JYB86_14690 PF02666 Phosphatidylserine decarboxylase JYB86_14695 PF00581 Rhodanese-like domain JYB86_14700 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JYB86_14700 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JYB86_14710 PF00199 Catalase JYB86_14710 PF06628 Catalase-related immune-responsive JYB86_14715 PF02580 D-Tyr-tRNA(Tyr) deacylase JYB86_14740 PF02503 Polyphosphate kinase middle domain JYB86_14740 PF13090 Polyphosphate kinase C-terminal domain 2 JYB86_14740 PF17941 Polyphosphate kinase C-terminal domain 1 JYB86_14740 PF13089 Polyphosphate kinase N-terminal domain JYB86_14745 PF01758 Sodium Bile acid symporter family JYB86_14750 PF00857 Isochorismatase family JYB86_14755 PF07690 Major Facilitator Superfamily JYB86_14760 PF00701 Dihydrodipicolinate synthetase family JYB86_14770 PF01259 SAICAR synthetase JYB86_14775 PF16193 AAA C-terminal domain JYB86_14775 PF00004 ATPase family associated with various cellular activities (AAA) JYB86_14775 PF12002 MgsA AAA+ ATPase C terminal JYB86_14780 PF03692 Putative zinc- or iron-chelating domain JYB86_14785 PF07043 Protein of unknown function (DUF1328) JYB86_14800 PF10576 Iron-sulfur binding domain of endonuclease III JYB86_14800 PF00633 Helix-hairpin-helix motif JYB86_14800 PF00730 HhH-GPD superfamily base excision DNA repair protein JYB86_14800 PF14815 NUDIX domain JYB86_14805 PF01551 Peptidase family M23 JYB86_14815 PF03352 Methyladenine glycosylase JYB86_14820 PF00107 Zinc-binding dehydrogenase JYB86_14820 PF08240 Alcohol dehydrogenase GroES-like domain JYB86_14825 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JYB86_14825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JYB86_14830 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JYB86_14830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JYB86_14835 PF03023 Lipid II flippase MurJ JYB86_14840 PF01510 N-acetylmuramoyl-L-alanine amidase JYB86_14845 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JYB86_14845 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JYB86_14850 PF03725 3' exoribonuclease family, domain 2 JYB86_14850 PF01138 3' exoribonuclease family, domain 1 JYB86_14855 PF00440 Bacterial regulatory proteins, tetR family JYB86_14860 PF01323 DSBA-like thioredoxin domain JYB86_14870 PF13419 Haloacid dehalogenase-like hydrolase JYB86_14875 PF00106 short chain dehydrogenase JYB86_14900 PF00583 Acetyltransferase (GNAT) family JYB86_14900 PF00696 Amino acid kinase family JYB86_14905 PF09084 NMT1/THI5 like JYB86_14910 PF09084 NMT1/THI5 like JYB86_14915 PF00296 Luciferase-like monooxygenase JYB86_14920 PF00528 Binding-protein-dependent transport system inner membrane component JYB86_14925 PF00005 ABC transporter JYB86_14930 PF13411 MerR HTH family regulatory protein JYB86_14930 PF00145 C-5 cytosine-specific DNA methylase JYB86_14935 PF01385 Probable transposase JYB86_14935 PF07282 Putative transposase DNA-binding domain JYB86_14935 PF12323 Helix-turn-helix domain JYB86_14940 PF08362 YcdC-like protein, C-terminal region JYB86_14940 PF00440 Bacterial regulatory proteins, tetR family JYB86_14950 PF06574 FAD synthetase JYB86_14950 PF01687 Riboflavin kinase JYB86_14955 PF08264 Anticodon-binding domain of tRNA JYB86_14955 PF00133 tRNA synthetases class I (I, L, M and V) JYB86_14955 PF06827 Zinc finger found in FPG and IleRS JYB86_14960 PF01252 Signal peptidase (SPase) II JYB86_14965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JYB86_14975 PF07995 Glucose / Sorbosone dehydrogenase JYB86_14980 PF07690 Major Facilitator Superfamily JYB86_15010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JYB86_15020 PF07859 alpha/beta hydrolase fold JYB86_15035 PF01385 Probable transposase JYB86_15035 PF12323 Helix-turn-helix domain JYB86_15035 PF07282 Putative transposase DNA-binding domain JYB86_15040 PF01025 GrpE JYB86_15045 PF00012 Hsp70 protein JYB86_15060 PF13406 Transglycosylase SLT domain JYB86_15070 PF13613 Helix-turn-helix of DDE superfamily endonuclease JYB86_15070 PF13359 DDE superfamily endonuclease JYB86_15075 PF02222 ATP-grasp domain JYB86_15075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JYB86_15080 PF00731 AIR carboxylase JYB86_15095 PF08245 Mur ligase middle domain JYB86_15095 PF02875 Mur ligase family, glutamate ligase domain JYB86_15095 PF01225 Mur ligase family, catalytic domain JYB86_15105 PF14542 GCN5-related N-acetyl-transferase JYB86_15115 PF03741 Integral membrane protein TerC family JYB86_15120 PF01979 Amidohydrolase family JYB86_15130 PF00156 Phosphoribosyl transferase domain JYB86_15140 PF10411 Disulfide bond isomerase protein N-terminus JYB86_15140 PF13098 Thioredoxin-like domain JYB86_15145 PF01545 Cation efflux family JYB86_15145 PF16916 Dimerisation domain of Zinc Transporter JYB86_15150 PF02583 Metal-sensitive transcriptional repressor JYB86_15165 PF07282 Putative transposase DNA-binding domain JYB86_15165 PF01385 Probable transposase JYB86_15165 PF12323 Helix-turn-helix domain JYB86_15170 PF00145 C-5 cytosine-specific DNA methylase JYB86_15170 PF13411 MerR HTH family regulatory protein JYB86_15185 PF13737 Transposase DDE domain JYB86_15190 PF12631 MnmE helical domain JYB86_15190 PF10396 GTP-binding protein TrmE N-terminus JYB86_15190 PF01926 50S ribosome-binding GTPase JYB86_15195 PF02096 60Kd inner membrane protein JYB86_15195 PF14849 YidC periplasmic domain JYB86_15200 PF01809 Putative membrane protein insertion efficiency factor JYB86_15205 PF00825 Ribonuclease P JYB86_15210 PF00468 Ribosomal protein L34